Query 008728
Match_columns 556
No_of_seqs 320 out of 1355
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 10:21:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 2.6E-49 8.9E-54 412.1 24.8 311 140-495 17-341 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 2.8E-43 9.4E-48 355.0 17.0 251 250-504 6-267 (270)
3 3mva_O Transcription terminati 100.0 1.9E-41 6.7E-46 352.7 22.5 308 109-435 17-341 (343)
4 4fp9_B Mterf domain-containing 100.0 1.5E-37 5.1E-42 319.4 15.8 218 284-510 45-277 (335)
5 3m66_A Mterf3, mterf domain-co 100.0 1.2E-32 4E-37 277.3 17.9 219 177-404 4-225 (270)
6 4fp9_B Mterf domain-containing 99.9 1.7E-25 5.7E-30 229.8 16.7 179 248-438 45-224 (335)
7 4fzv_B Mterf domain-containing 99.5 6.4E-13 2.2E-17 116.6 14.3 185 321-510 33-232 (239)
8 4fzv_B Mterf domain-containing 98.5 8.1E-07 2.8E-11 78.1 10.8 146 251-405 35-181 (239)
9 3ugm_A TAL effector avrbs3/PTH 96.4 0.06 2.1E-06 58.6 15.3 87 287-379 413-501 (1047)
10 4hpz_A Dtale2; DNA binding pro 96.1 0.31 1.1E-05 49.3 17.7 48 118-170 8-55 (463)
11 3ugm_A TAL effector avrbs3/PTH 95.6 0.14 4.8E-06 55.7 14.2 146 187-344 354-503 (1047)
12 4hpz_A Dtale2; DNA binding pro 92.4 5.9 0.0002 40.1 17.1 279 114-414 131-422 (463)
13 4ae4_A Ubiquitin-associated pr 92.2 1.7 5.7E-05 37.1 11.4 95 143-257 9-112 (118)
14 3v6t_A DHAX3; tandem repeats, 91.4 7.4 0.00025 39.8 16.6 215 113-343 90-315 (499)
15 3v6t_A DHAX3; tandem repeats, 90.8 6.6 0.00023 40.1 15.6 208 120-343 64-281 (499)
16 3ff5_A PEX14P, peroxisomal bio 87.6 1.1 3.9E-05 32.5 5.4 33 381-417 21-53 (54)
17 4ae4_A Ubiquitin-associated pr 87.5 12 0.00042 31.7 12.9 100 180-293 10-112 (118)
18 2w84_A Peroxisomal membrane pr 82.0 2.5 8.4E-05 32.4 5.3 34 381-418 26-59 (70)
19 3e3v_A Regulatory protein RECX 80.3 20 0.00067 32.5 12.0 137 114-272 24-162 (177)
20 3dfg_A Xcrecx, regulatory prot 79.3 34 0.0012 30.4 14.7 137 113-273 22-159 (162)
21 1oqy_A HHR23A, UV excision rep 74.2 2.8 9.5E-05 43.0 4.7 24 286-309 326-349 (368)
22 1oqy_A HHR23A, UV excision rep 73.6 2 6.9E-05 44.1 3.5 24 213-236 168-191 (368)
23 3ff5_A PEX14P, peroxisomal bio 73.1 7.9 0.00027 28.1 5.5 24 178-201 30-53 (54)
24 3d5l_A Regulatory protein RECX 68.0 79 0.0027 29.5 15.4 22 249-270 182-203 (221)
25 3c1d_A Protein ORAA, regulator 56.0 70 0.0024 28.1 9.9 133 114-271 11-155 (159)
26 2w84_A Peroxisomal membrane pr 55.4 22 0.00076 27.1 5.3 24 142-165 35-58 (70)
27 2cos_A Serine/threonine protei 54.8 7 0.00024 28.2 2.3 45 140-191 7-51 (54)
28 2knz_A Ubiquilin-4; cytoplasm, 53.2 26 0.00089 25.0 5.2 40 142-189 11-51 (53)
29 2xzm_O RPS13E; ribosome, trans 47.9 40 0.0014 29.6 6.5 37 201-237 23-59 (153)
30 1ify_A HHR23A, UV excision rep 45.6 33 0.0011 24.0 4.7 23 143-165 9-31 (49)
31 2knz_A Ubiquilin-4; cytoplasm, 45.6 52 0.0018 23.4 5.8 41 212-260 10-51 (53)
32 1ify_A HHR23A, UV excision rep 41.6 25 0.00086 24.6 3.5 39 393-438 7-45 (49)
33 3u5c_N S27A, YS15, 40S ribosom 40.6 41 0.0014 29.5 5.4 37 201-237 21-57 (151)
34 3e3v_A Regulatory protein RECX 39.1 2.1E+02 0.0072 25.5 10.8 137 145-308 24-162 (177)
35 2ooa_A E3 ubiquitin-protein li 38.0 54 0.0018 23.4 4.6 21 144-164 13-33 (52)
36 2lbc_A Ubiquitin carboxyl-term 36.3 84 0.0029 26.5 6.8 36 145-187 6-41 (126)
37 1z96_A DNA-damage, UBA-domain 36.1 68 0.0023 20.8 4.9 20 145-164 7-26 (40)
38 1veg_A NEDD8 ultimate buster-1 35.5 60 0.002 25.6 5.1 41 395-442 30-70 (83)
39 2g3q_A Protein YBL047C; endocy 34.8 47 0.0016 22.3 4.0 22 144-165 6-27 (43)
40 2lky_A Uncharacterized protein 34.6 1.9E+02 0.0065 24.0 8.2 79 111-191 10-94 (112)
41 2oo9_A E3 ubiquitin-protein li 33.5 41 0.0014 23.3 3.3 24 393-416 3-26 (46)
42 2kvc_A Putative uncharacterize 33.0 2E+02 0.0069 23.5 9.6 78 112-191 9-92 (103)
43 1uxc_A FRUR (1-57), fructose r 32.7 42 0.0014 24.9 3.7 47 150-197 8-54 (65)
44 2ooa_A E3 ubiquitin-protein li 31.9 91 0.0031 22.2 5.0 22 215-236 13-34 (52)
45 2xzm_O RPS13E; ribosome, trans 31.9 96 0.0033 27.3 6.3 29 136-164 29-57 (153)
46 1g6u_A Domain swapped dimer; d 30.5 1E+02 0.0034 20.6 4.7 21 113-133 7-27 (48)
47 1uxc_A FRUR (1-57), fructose r 30.1 55 0.0019 24.3 4.0 16 223-238 10-25 (65)
48 2jy5_A Ubiquilin-1; UBA, alter 29.4 68 0.0023 22.7 4.2 22 143-164 13-35 (52)
49 1wji_A Tudor domain containing 29.0 82 0.0028 23.3 4.7 37 143-187 10-46 (63)
50 2lbc_A Ubiquitin carboxyl-term 28.6 69 0.0024 27.0 4.9 40 395-441 79-118 (126)
51 2cos_A Serine/threonine protei 28.3 36 0.0012 24.5 2.4 41 114-156 12-52 (54)
52 2d9s_A CBL E3 ubiquitin protei 28.0 56 0.0019 23.5 3.4 24 394-417 9-32 (53)
53 2dak_A Ubiquitin carboxyl-term 27.4 97 0.0033 22.7 4.9 40 395-441 10-49 (63)
54 1vg5_A RSGI RUH-014, rhomboid 27.0 43 0.0015 25.7 2.9 39 393-438 28-66 (73)
55 1vg5_A RSGI RUH-014, rhomboid 27.0 72 0.0025 24.5 4.2 21 144-164 31-51 (73)
56 1wji_A Tudor domain containing 25.8 53 0.0018 24.3 3.2 38 395-439 10-47 (63)
57 3u5c_N S27A, YS15, 40S ribosom 25.2 99 0.0034 27.1 5.2 29 136-164 27-55 (151)
58 1wgn_A UBAP1, ubiquitin associ 25.1 47 0.0016 24.6 2.6 34 145-186 22-55 (63)
59 2ztd_A Holliday junction ATP-d 24.6 4.2E+02 0.014 24.5 11.0 55 109-165 81-142 (212)
60 2ekk_A UBA domain from E3 ubiq 23.6 55 0.0019 22.5 2.7 35 395-437 10-44 (47)
61 4gfj_A Topoisomerase V; helix- 23.4 4E+02 0.014 27.5 9.9 248 42-305 286-565 (685)
62 1wiv_A UBP14, ubiquitin-specif 23.1 69 0.0024 24.4 3.4 39 395-440 30-68 (73)
63 2dkl_A Trinucleotide repeat co 23.0 1.1E+02 0.0039 24.0 4.8 41 143-191 22-62 (85)
64 3idw_A Actin cytoskeleton-regu 22.4 1.4E+02 0.0048 22.8 4.9 49 115-163 6-58 (72)
65 2dah_A Ubiquilin-3; UBA domain 22.0 1.3E+02 0.0044 21.5 4.5 36 215-258 11-47 (54)
66 1wiv_A UBP14, ubiquitin-specif 21.7 1.3E+02 0.0043 23.0 4.7 36 144-187 31-66 (73)
67 3ayh_A DNA-directed RNA polyme 21.4 1.2E+02 0.0041 26.0 5.1 31 174-204 73-103 (136)
68 3q8k_A Flap endonuclease 1; he 21.1 2.4E+02 0.0081 28.1 8.0 42 115-165 209-251 (341)
69 3dfg_A Xcrecx, regulatory prot 20.9 4.1E+02 0.014 23.1 12.2 28 211-238 133-160 (162)
70 2dag_A Ubiquitin carboxyl-term 20.6 1.6E+02 0.0055 22.4 5.1 41 395-441 10-50 (74)
71 3j20_Q 30S ribosomal protein S 20.3 1.3E+02 0.0043 26.7 4.9 37 201-237 21-57 (158)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=2.6e-49 Score=412.10 Aligned_cols=311 Identities=17% Similarity=0.281 Sum_probs=239.2
Q ss_pred hhHHHHHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCCCChhhHHHHHhhCCCcccccHHHHHHHHHH
Q 008728 140 ESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHF 219 (556)
Q Consensus 140 ~~l~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G~~~~~i~~lv~~~P~iL~~s~~~l~~~v~f 219 (556)
...+.++++|.++|++.+++ +. .+|+++..++++..++++||+++|++.++|++++.++|.+|.++++++.++++|
T Consensus 17 ~~~~~~v~~L~s~Gl~~~~~---~~-~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~f 92 (343)
T 3mva_O 17 LKNEDLLKNLLTMGVDIDMA---RK-RQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDL 92 (343)
T ss_dssp ---CCHHHHHHHHTCCHHHH---HH-HCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCCCHHHH---HH-hCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHH
Confidence 34566888888888886654 34 388888888888888888888888888888888888888888887778888888
Q ss_pred HHHcCCChhHHHHHHHhCCcccccchh-hhHHHHHHHHHHcCCChHHHHHHHhhCCcccccCcccchHHHHHHHHHcCCC
Q 008728 220 YLDMGMNKNDFGTMVFDYPKILGFLTL-EEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVS 298 (556)
Q Consensus 220 L~~lG~s~~~l~~ll~~~P~iL~~~~~-~~l~~~v~~L~~lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~lGls 298 (556)
|+++|++++++++++.++|++|..+.. +++.++++||+++|++.++|++++.++|+++++++++ .++++++|+++|++
T Consensus 93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~ 171 (343)
T 3mva_O 93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLS 171 (343)
T ss_dssp HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCC
Confidence 888888888888888888884433344 3677777777777777777777777777777777764 37777777765543
Q ss_pred ------hhhHHHHHhhCCcccccCccccchhHHHHHH-HhCCChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCC
Q 008728 299 ------RDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ-DIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVS 371 (556)
Q Consensus 299 ------~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~-~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~ 371 (556)
.+.|.+++.++|.+|+.+ +++++++++||+ ++|++.+++..++.+.|
T Consensus 172 ~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~------------------------- 225 (343)
T 3mva_O 172 LGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPG------------------------- 225 (343)
T ss_dssp TTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTT-------------------------
T ss_pred cCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCC-------------------------
Confidence 445666666666666666 445666666666 36666655555554432
Q ss_pred cchHhHHHhhccceeeccchhhHHHHHHH----HHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHHhCCChhHH
Q 008728 372 ERDIGKCLALGPELLGCSIGNKLEVNVKY----FLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDL 447 (556)
Q Consensus 372 ~~~i~~vi~~~P~iL~~s~~~~l~~kv~~----L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i 447 (556)
|.+++.+. +.+++++.+ |+++||+.+|++.|+.++|++|.+|.+++++|++||.+ ||+++++|
T Consensus 226 -----------~~~l~~s~-~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i 292 (343)
T 3mva_O 226 -----------AEILDLSN-DYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQI 292 (343)
T ss_dssp -----------GGGGGCCT-THHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHH
T ss_pred -----------hHHhhccH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHH
Confidence 24444443 345555544 44799999999999999999999999999999999999 99999999
Q ss_pred hhcCcccccCcccccHHHHHHHHHCCCCcccc--cccccChHHHHHHHHh
Q 008728 448 IEFPRFFSYSLEERIIPRHKIMVENRVNFKLR--YMLACSNEEFNQKVAD 495 (556)
Q Consensus 448 ~~~P~~L~ySLe~RI~pR~~~L~~~Gl~~~l~--~~L~~sd~~F~~~~~~ 495 (556)
+++|++|+||+| ||+|||++|+++|+++++. +||++||++|.++|+.
T Consensus 293 ~~~P~~l~~sle-ri~~R~~~L~~~g~~~~~~~~~~l~~s~~~F~~~~~~ 341 (343)
T 3mva_O 293 IENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKK 341 (343)
T ss_dssp HHSGGGGGSCHH-HHHHHHHHHHTTTCCSSSSCGGGGGSCHHHHHHHHHH
T ss_pred HhCCHHHhcCHH-HHHHHHHHHHHCCCCCCCCcchhhcCCHHHHHHHHhc
Confidence 999999999999 9999999999999999888 9999999999999875
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=2.8e-43 Score=354.99 Aligned_cols=251 Identities=20% Similarity=0.348 Sum_probs=227.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCCcccccCcccchHHHHHHHHHcCCChhhHHHHHhhCCcccccCccccchhHHHHHH
Q 008728 250 HQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ 329 (556)
Q Consensus 250 ~~~v~~L~~lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~ 329 (556)
.+++++|.++|++..+|.+....+|.+|+++++++++|+++||.++|++.+++++++.++|.+|+.++++ ++|+++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 5788999999999988876666666669999888899999999999999999999999999999999887 999999999
Q ss_pred HhCCChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHH-HHhCCCH
Q 008728 330 DIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYF-LSLGIKL 408 (556)
Q Consensus 330 ~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L-~~lG~~~ 408 (556)
++|++.+++.+++.++|++|++++++ ++++++||.+++|++.+++.+++.++|.+++++. ++++++++++ .++|++.
T Consensus 85 ~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~-e~~~~~v~~l~~~~G~s~ 162 (270)
T 3m66_A 85 SKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSL-EPVKENMKVYRLELGFKH 162 (270)
T ss_dssp HTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCS-HHHHHHHHHHHHTSCCCH
T ss_pred HcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeech-HHHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999885 9999999876899999999999999999999997 5799999976 5899999
Q ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHhCCChhHHhhcCcccccCcccccHHHHHHHHH---CCC------Ccccc
Q 008728 409 HQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVE---NRV------NFKLR 479 (556)
Q Consensus 409 ~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~ySLe~RI~pR~~~L~~---~Gl------~~~l~ 479 (556)
+++..|+.++|++|++|.+++++|++||.++||+++++|+++|++|+||+| ||+|||.+|+. +|+ .+++.
T Consensus 163 ~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~ 241 (270)
T 3m66_A 163 NEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLD 241 (270)
T ss_dssp HHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHH
T ss_pred HHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999 99999988776 554 25678
Q ss_pred cccccChHHHHHHHHhh-hhchhhhh
Q 008728 480 YMLACSNEEFNQKVADK-VEGRRLYE 504 (556)
Q Consensus 480 ~~L~~sd~~F~~~~~~~-~e~~~~f~ 504 (556)
+++++||++|+++|++. +|+|+.|.
T Consensus 242 ~~l~~sd~~F~~~~~~~~~eey~~f~ 267 (270)
T 3m66_A 242 KLVSIPDEIFCEEIAKASVQDFEKFL 267 (270)
T ss_dssp HHHHSCHHHHHHHTTCSCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHhcCCHHHHHHHH
Confidence 89999999999999994 79999996
No 3
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=1.9e-41 Score=352.74 Aligned_cols=308 Identities=15% Similarity=0.220 Sum_probs=273.0
Q ss_pred CChhhHHHHHHHCCCChHHHHHHHhh-ccCChhhHHHHHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHh
Q 008728 109 SNVVPLIRWLKHNGLSYPKIAKLICM-SGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLET 187 (556)
Q Consensus 109 ~~~~~~~~~L~~~G~s~~~i~~~~~~-~~~~~~~l~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s 187 (556)
.....+++||.++|++.+++.+.... ...+++.++++++||+++|++.++|++++.+ +|.+|.++++++.++++||++
T Consensus 17 ~~~~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~-~P~lL~~~~~~l~p~l~fL~~ 95 (343)
T 3mva_O 17 LKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISR-YPRAITRTPENLSKRWDLWRK 95 (343)
T ss_dssp ---CCHHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHH-CGGGGGCCHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHh-CcHHHhCCHHHHHHHHHHHHH
Confidence 34567899999999999998877653 4567788899999999999999999999997 999999999999999999999
Q ss_pred CCCChhhHHHHHhhCCC-cccccHH-HHHHHHHHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCC---
Q 008728 188 NGVRRDWMGYVMSRCPQ-LLSQSIE-EVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLS--- 262 (556)
Q Consensus 188 ~G~~~~~i~~lv~~~P~-iL~~s~~-~l~~~v~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~--- 262 (556)
+|++.+++++++.++|. +++.+.+ ++.++++||+++|++.+++++++.++|++++.+.+. ..+++++|+++|++
T Consensus 96 lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~~g~ 174 (343)
T 3mva_O 96 IVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGH 174 (343)
T ss_dssp TSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCCcCC
Confidence 99999999999999999 5666664 799999999999999999999999999999986554 49999999987664
Q ss_pred ---hHHHHHHHhhCCcccccCcccchHHHHHHHH-HcCCChhhHHHHHhhC-CcccccCccccchhHHHHHH----HhCC
Q 008728 263 ---TEDVGRLLAFRPHLMGCGIGERWKPLVKYLY-YLGVSRDGMRRMLVIK-PMVFCFDLETTIVPKVRFFQ----DIGV 333 (556)
Q Consensus 263 ---~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~-~lGls~~~i~~il~~~-P~iL~~~~e~~l~~kv~~L~----~lG~ 333 (556)
.+.|.+++.++|.+++.+ +++++++++||+ ++|++.+++.+++.+. |.+++.+.+ .+++++.++. ++|+
T Consensus 175 ~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~-~l~~~~~~l~e~~~~lG~ 252 (343)
T 3mva_O 175 NDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSND-YARRSYANIKEKLFSLGC 252 (343)
T ss_dssp SCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTT-HHHHHHHHHHHHHHTTTC
T ss_pred CcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHH-HHHHHHHHHHHHHHHcCC
Confidence 778999999999999999 679999999999 5999999999999885 588888865 6999997776 6999
Q ss_pred ChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHHHhCCCHHHHHH
Q 008728 334 RDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGA 413 (556)
Q Consensus 334 s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~~lG~~~~ei~~ 413 (556)
+.+++..|+.++|++|++|.++ ++++++||++ ||++.++| .++|++|++|.+ +|++|+++|++.|+...
T Consensus 253 s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl~~-mg~~~~~i----~~~P~~l~~sle-ri~~R~~~L~~~g~~~~---- 321 (343)
T 3mva_O 253 TEEEVQKFVLSYPDVIFLAEKK-FNDKIDCLME-ENISISQI----IENPRVLDSSIS-TLKSRIKELVNAGCNLS---- 321 (343)
T ss_dssp CHHHHHHHHHTCGGGGGSCHHH-HHHHHHHHHT-TTCCHHHH----HHSGGGGGSCHH-HHHHHHHHHHTTTCCSS----
T ss_pred CHHHHHHHHHhCCchhcccHHH-HHHHHHHHHH-cCCCHHHH----HhCCHHHhcCHH-HHHHHHHHHHHCCCCCC----
Confidence 9999999999999999999986 9999999987 99998875 589999999997 99999999999998752
Q ss_pred HHhhcc--cccccchhhHHHHHHH
Q 008728 414 MIADFP--MLLRYNIDIFRPKYRY 435 (556)
Q Consensus 414 ml~~~P--~lL~~s~e~l~~k~~f 435 (556)
.+ .+|..+.+....|+.-
T Consensus 322 ----~~~~~~l~~s~~~F~~~~~~ 341 (343)
T 3mva_O 322 ----TLNITLLSWSKKRYEAKLKK 341 (343)
T ss_dssp ----SSCGGGGGSCHHHHHHHHHH
T ss_pred ----CCcchhhcCCHHHHHHHHhc
Confidence 34 7888888888887754
No 4
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=319.37 Aligned_cols=218 Identities=21% Similarity=0.313 Sum_probs=187.3
Q ss_pred chHHHHHHHHHcCCChhhHHHHHhhCCcccccCccccchhHHHHHHHhCCChhhHhhhhhhcCccccchhhhhhHHHHHH
Q 008728 284 RWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIF 363 (556)
Q Consensus 284 ~l~~~v~~L~~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~f 363 (556)
.+.+.+..|.++||++.+|++++..+|.++.. ++.+++.+|..+|++.++|++||.++|++|+++++ +|++++.|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 46667777778888888888888888877643 36777888888888888888888888888888876 48888888
Q ss_pred HHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHH-HhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHHhCC
Q 008728 364 LMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFL-SLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVR 442 (556)
Q Consensus 364 L~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~-~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~mg~ 442 (556)
| +++|++..++.+++.++|++|+++. +++..++.+|. ++||+.++++.||.++|++|.+|.++|++|++||+++||+
T Consensus 120 L-~~lGl~~~~i~~ll~~~P~lL~~s~-e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl 197 (335)
T 4fp9_B 120 L-QKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGI 197 (335)
T ss_dssp H-HHTTCTTTTHHHHHHHCGGGGTSCH-HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCC
T ss_pred H-HHcCCCHHHHHHHHHhCchhhccCh-HHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCC
Confidence 8 5688888888888888888888886 57888888887 6999999999999999999999999999999999999999
Q ss_pred ChhHHhhcCcccccCcccccHHHHHHHHHCCCC-------------cccccccccChHHHHHHHHh-hhhchhhhhhccc
Q 008728 443 PLQDLIEFPRFFSYSLEERIIPRHKIMVENRVN-------------FKLRYMLACSNEEFNQKVAD-KVEGRRLYELGLI 508 (556)
Q Consensus 443 ~~~~i~~~P~~L~ySLe~RI~pR~~~L~~~Gl~-------------~~l~~~L~~sd~~F~~~~~~-~~e~~~~f~~~~~ 508 (556)
++.+|++ |.+|+|||+ ||+|||.||+..|.. ++|.+++.+||++|++++++ .+++|+.|.-...
T Consensus 198 ~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~eey~~F~k~~~ 275 (335)
T 4fp9_B 198 KHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLLA 275 (335)
T ss_dssp CHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred CHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999997 999999999 999999999999872 46889999999999999997 5899999887766
Q ss_pred cC
Q 008728 509 NE 510 (556)
Q Consensus 509 ~e 510 (556)
.|
T Consensus 276 ~e 277 (335)
T 4fp9_B 276 RE 277 (335)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=1.2e-32 Score=277.34 Aligned_cols=219 Identities=19% Similarity=0.317 Sum_probs=179.0
Q ss_pred hHHHHHHHHHhCCCChhhHHHHHhhCCCcccccHH-HHHHHHHHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHH
Q 008728 177 ELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIE-EVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTY 255 (556)
Q Consensus 177 ~l~~~l~~L~s~G~~~~~i~~lv~~~P~iL~~s~~-~l~~~v~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~ 255 (556)
+-.+++++|.++|++.++|.+....+|.+|+++++ ++.++++||+++|++++++++++.++|.+|+++.++ +.++++|
T Consensus 4 ~~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~ 82 (270)
T 3m66_A 4 DHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAY 82 (270)
T ss_dssp HHHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHH
Confidence 33477888888888888887776667777888886 688888888888888888888888888888886655 8888888
Q ss_pred HHHcCCChHHHHHHHhhCCcccccCcccchHHHHHHHH-HcCCChhhHHHHHhhCCcccccCccccchhHHHHH-HHhCC
Q 008728 256 LKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLY-YLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFF-QDIGV 333 (556)
Q Consensus 256 L~~lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~-~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L-~~lG~ 333 (556)
|+++|++.++|++++.++|++|+.+++ +++++++||+ ++|++.+++.+++.++|.+++.+.+ .++++++++ +++|+
T Consensus 83 L~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~ 160 (270)
T 3m66_A 83 LHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGF 160 (270)
T ss_dssp HHHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCC
T ss_pred HHHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCC
Confidence 888888888888888888888888887 5888888884 7888888888888888888888876 488888875 58888
Q ss_pred ChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHHHh
Q 008728 334 RDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSL 404 (556)
Q Consensus 334 s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~~l 404 (556)
+.+++..++.++|++|++|.+ +++++++||+++||++.++| .++|++|++|.+ +|++|+.+|+.+
T Consensus 161 s~~ei~~~v~~~P~il~~s~~-~l~~k~~fL~~~mg~~~~~i----~~~P~~l~~Sle-ri~pR~~~l~~L 225 (270)
T 3m66_A 161 KHNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHHII----VKFPQVFNTRLF-KVKERHLFLTYL 225 (270)
T ss_dssp CHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTSCCCHHHH----HHCGGGGGSCHH-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCChhheecHH-HHHHHHHHHHHHhCCCHHHH----HhCchHhhCCHH-HHHHHHHHHHHh
Confidence 888888888888888888884 68888888888888887754 478888888886 888888887753
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=229.84 Aligned_cols=179 Identities=20% Similarity=0.344 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHhhCCcccccCcccchHHHHHHHHHcCCChhhHHHHHhhCCcccccCccccchhHHHH
Q 008728 248 EMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRF 327 (556)
Q Consensus 248 ~l~~~v~~L~~lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~ 327 (556)
.+.+.+..|+++|+++++|+++++.+|.++.. ++.+++.||..+|++.++|++||.++|.+|+++++ .|++++.|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 34455555555555555555555555555432 34455555555555555555555555555555543 25555555
Q ss_pred HHHhCCChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHH-HhCC
Q 008728 328 FQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFL-SLGI 406 (556)
Q Consensus 328 L~~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~-~lG~ 406 (556)
|+++|++.+++.+++.++|++|+++.++ ++.++.+|...+||+.+++..|+.++|++|++|. ++|++|++||. .+|+
T Consensus 120 L~~lGl~~~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~-e~L~~K~efLv~~Mgl 197 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGI 197 (335)
T ss_dssp HHHTTCTTTTHHHHHHHCGGGGTSCHHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTTCC
T ss_pred HHHcCCCHHHHHHHHHhCchhhccChHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH-HHHHHHHHHHHHHhCC
Confidence 5555555555555555555555555543 4555555544555555555555555555555553 45555555555 3666
Q ss_pred CHHHHHHHHhhcccccccchhhHHHHHHHHHH
Q 008728 407 KLHQLGAMIADFPMLLRYNIDIFRPKYRYLRR 438 (556)
Q Consensus 407 ~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~ 438 (556)
+.++|. + |++|+||.++|++|..||..
T Consensus 198 ~~~eIv----k-P~~l~ySLeRIkpRH~fL~~ 224 (335)
T 4fp9_B 198 KHPDIV----K-SEYLQYSLTKIKQRHIYLER 224 (335)
T ss_dssp CHHHHH----H-TTGGGSCHHHHHHHHHHHHH
T ss_pred CHHHcc----c-cchhhccHHHHHHHHHHHHH
Confidence 655542 2 66666666666666666654
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.47 E-value=6.4e-13 Score=116.63 Aligned_cols=185 Identities=22% Similarity=0.333 Sum_probs=162.0
Q ss_pred chhHHHHHHHhCCChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHH
Q 008728 321 IVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKY 400 (556)
Q Consensus 321 l~~kv~~L~~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~ 400 (556)
+...+.-+.-+|+.++-++-++++.|+++.+++.. ++.+-.|| .++|+.+..+..++--+|.|++... ..|...+..
T Consensus 33 lldiisefillglnpepvcvvlkkspqllklpimq-mrkrssyl-qklglgegklkrvlyccpeiftmrq-qdindtvrl 109 (239)
T 4fzv_B 33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYL-QKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRL 109 (239)
T ss_dssp TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHH-HHHTTCSSCCHHHHHHCGGGGTSCH-HHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHH-HHHHHHHH-HHhCCCccchhhheecCcHHHHHHH-hhHhHHHHH
Confidence 44555556678999999999999999999999874 88888998 6999999999999999999999885 679999999
Q ss_pred HHH-hCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHHhCCChhHHhhcCcccccCcccccHHHHHHHHHCCCC----
Q 008728 401 FLS-LGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSLEERIIPRHKIMVENRVN---- 475 (556)
Q Consensus 401 L~~-lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~ySLe~RI~pR~~~L~~~Gl~---- 475 (556)
|++ +-|+.+++.+++..||.+|.-+...++-|+.|..-+||..+.+|++. .|+.|||. .|+.||-+|...|..
T Consensus 110 lkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtpd 187 (239)
T 4fzv_B 110 LKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPD 187 (239)
T ss_dssp HHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCC
T ss_pred HHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCC
Confidence 995 99999999999999999999999999999999999999999999985 69999998 599999999987751
Q ss_pred ---------cccccccccChHHHHHHHHh-hhhchhhhhhccccC
Q 008728 476 ---------FKLRYMLACSNEEFNQKVAD-KVEGRRLYELGLINE 510 (556)
Q Consensus 476 ---------~~l~~~L~~sd~~F~~~~~~-~~e~~~~f~~~~~~e 510 (556)
+-+..+|..|+++|..|-+. .+|++..|.-....|
T Consensus 188 kkgqtqipnpllkdilrvseaeflartactsveefqvfkkllare 232 (239)
T 4fzv_B 188 KKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLLARE 232 (239)
T ss_dssp SSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHHHHHHHHHHHHHH
T ss_pred ccCCccCCChHHHHHHHHhHHHHHHHHhcccHHHHHHHHHHHhhh
Confidence 33578999999999999998 589998888655544
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.48 E-value=8.1e-07 Score=78.08 Aligned_cols=146 Identities=24% Similarity=0.354 Sum_probs=95.2
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCCcccccCcccchHHHHHHHHHcCCChhhHHHHHhhCCcccccCccccchhHHHHHH-
Q 008728 251 QKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ- 329 (556)
Q Consensus 251 ~~v~~L~~lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~- 329 (556)
..+.-+.-+|++++-+..++.+.|+++...+- .++.+-.||..+|+....+.+++--+|.|++..-. .+...+..|+
T Consensus 35 diisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrllke 112 (239)
T 4fzv_B 35 DIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKE 112 (239)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHHHHH
Confidence 34444555677777777777777777777765 67777777777777777777777777777776543 4777777776
Q ss_pred HhCCChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHHHhC
Q 008728 330 DIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLG 405 (556)
Q Consensus 330 ~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~~lG 405 (556)
.+-++..++.+++..||.++.-++.. +.-++.|.--.||+..-+|.+ ...+.+|+ .+|+.+.-||..+|
T Consensus 113 kclftvqqvtkilhscpsvlredlgq-leykfqyayfrmgikhpdivk-----seylqysl-tkikqrhiylerlg 181 (239)
T 4fzv_B 113 KCLFTVQQVTKILHSCPSVLREDLGQ-LEYKFQYAYFRMGIKHPDIVK-----SEYLQYSL-TKIKQRHIYLERLG 181 (239)
T ss_dssp HSCCCHHHHHHHHHHCGGGGTSCTTH-HHHHHHHHHHTSCCCHHHHHH-----TTGGGSCH-HHHHHHHHHHHHHT
T ss_pred hHHhhHHHHHHHHHhCcHHHHHHHhh-hhhhHhHHHHHccCCCcchhH-----HHHHHHHH-HHHHHHHhHHHHhc
Confidence 46677777777777777777766653 555555544466665554432 13444554 45555555555554
No 9
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=96.35 E-value=0.06 Score=58.56 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=39.2
Q ss_pred HHHHHHH-HcCCChhhHHHHHhhCCcccccCccccchhHHHHHH-HhCCChhhHhhhhhhcCccccchhhhhhHHHHHHH
Q 008728 287 PLVKYLY-YLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ-DIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFL 364 (556)
Q Consensus 287 ~~v~~L~-~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~-~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL 364 (556)
.....|+ +.||++++|.+|-..+-.-=. +| .+...+..|. ..|++.++|.+|-...-.--.+..-..+.| -+
T Consensus 413 ~L~p~l~~~~glt~~qvv~IAsn~GGkQA--Le-~V~~llp~L~~~~glt~aqvVaIAsn~GGkQALeaV~~llp---vl 486 (1047)
T 3ugm_A 413 RLLPVLCQAHGLTPDQVVAIASHDGGKQA--LE-TVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLP---VL 486 (1047)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHSSTTTHHH--HH-HHHHHHHHHHTTSCCCHHHHHHHSSSTTHHHHHHHHHHHHH---HH
T ss_pred hccchhhhhcCCCHHHhhhhhccCchHHH--HH-HHHHHhHHhhcccCCCHHHHHHHHhcCcHHHHHHHHHHHHH---HH
Confidence 3334444 467777777666544332111 11 2344444444 467777766655443221111110001222 12
Q ss_pred HHHcCCCcchHhHHH
Q 008728 365 MTKAGVSERDIGKCL 379 (556)
Q Consensus 365 ~~~lGl~~~~i~~vi 379 (556)
....|+++++|..|.
T Consensus 487 ~~~~gls~~qvvaiA 501 (1047)
T 3ugm_A 487 CQAHGLTPDQVVAIA 501 (1047)
T ss_dssp HHHSCCCSHHHHHHH
T ss_pred HHhcCCCHHHHHHHH
Confidence 234677777766553
No 10
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=96.06 E-value=0.31 Score=49.26 Aligned_cols=48 Identities=13% Similarity=-0.002 Sum_probs=28.9
Q ss_pred HHHCCCChHHHHHHHhhccCChhhHHHHHHHHHhCCCChhHHHHHHHhhCCcc
Q 008728 118 LKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNI 170 (556)
Q Consensus 118 L~~~G~s~~~i~~~~~~~~~~~~~l~~~l~~L~~lGls~~~i~~il~r~~P~l 170 (556)
|+.+|+|.+++.|+... ....+..-.+.|...||+..+|..| .+ +|.-
T Consensus 8 l~~lgys~~q~~k~k~~---~~s~va~~h~~l~~~g~t~~~i~~i-s~-~~~a 55 (463)
T 4hpz_A 8 LRTLGYSQQQQEKIKPK---VRSTVAQHHEALVGHGFTHAHIVAL-SQ-HPAA 55 (463)
T ss_dssp GGGGTCCHHHHHHHCGG---GHHHHHHHHHHHHHTTCCHHHHHHH-TT-STHH
T ss_pred HHHhccCHHHHHHhhHH---HHHHHHHHHHHHHhcCCCHHHHHHh-hc-cHhH
Confidence 45667777777776542 2334445566677777777777643 43 4443
No 11
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=95.65 E-value=0.14 Score=55.75 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=68.7
Q ss_pred hCCCChhhHHHHHhhCCCcccccHHHHHHHHHHHH-HcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHH-HcCCChH
Q 008728 187 TNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYL-DMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLK-EFGLSTE 264 (556)
Q Consensus 187 s~G~~~~~i~~lv~~~P~iL~~s~~~l~~~v~fL~-~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~-~lG~~~~ 264 (556)
.+|++++++..|-+..-- ..-.+.+...+-.|. ..|++++++.+|-..- +..-.+.+......|. +.|++++
T Consensus 354 ~~gls~~qvVaIAsn~GG--kQALe~V~~llp~L~~~~gls~~~vvaiA~~G----G~qALe~V~~L~p~l~~~~glt~~ 427 (1047)
T 3ugm_A 354 AHGLTPDQVVAIASNGGG--KQALETVQRLLPVLCQAHGLTPDQVVAIASNG----GKQALETVQRLLPVLCQAHGLTPD 427 (1047)
T ss_dssp TSCCCHHHHHHHHSSTTH--HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHT----HHHHHHHHHHHHHHHHTTSSCCHH
T ss_pred hccCCHHHhhhhhhcCch--HHHHHHHHHhhhhhhhhcCCCHHHHHHHhccc----chhHHHHHhhccchhhhhcCCCHH
Confidence 366666666655432110 000111222233333 2577777776655420 0011122333333344 5788888
Q ss_pred HHHHHHhhCCcccccCcccchHHHHHHHH-HcCCChhhHHHHHhhCCcccccCccccchhHHHHHH-HhCCChhhHhhhh
Q 008728 265 DVGRLLAFRPHLMGCGIGERWKPLVKYLY-YLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ-DIGVRDEGIANML 342 (556)
Q Consensus 265 ~I~~ll~~~P~lL~~s~e~~l~~~v~~L~-~lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~-~lG~s~~~i~~~i 342 (556)
+|..|-..+-.--. . +.+...+-.|+ ..|++.++|.+|-...-.--.+ | .+..-+..+. ..|++.++|.+|.
T Consensus 428 qvv~IAsn~GGkQA--L-e~V~~llp~L~~~~glt~aqvVaIAsn~GGkQAL--e-aV~~llpvl~~~~gls~~qvvaiA 501 (1047)
T 3ugm_A 428 QVVAIASHDGGKQA--L-ETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQAL--E-TVQQLLPVLCQAHGLTPDQVVAIA 501 (1047)
T ss_dssp HHHHHHSSTTTHHH--H-HHHHHHHHHHHTTSCCCHHHHHHHSSSTTHHHHH--H-HHHHHHHHHHHHSCCCSHHHHHHH
T ss_pred HhhhhhccCchHHH--H-HHHHHHhHHhhcccCCCHHHHHHHHhcCcHHHHH--H-HHHHHHHHHHHhcCCCHHHHHHHH
Confidence 87766554322111 1 13444445555 5788888887765543221111 1 1223333333 4788888777665
Q ss_pred hh
Q 008728 343 VK 344 (556)
Q Consensus 343 ~~ 344 (556)
..
T Consensus 502 ~n 503 (1047)
T 3ugm_A 502 SN 503 (1047)
T ss_dssp SS
T ss_pred hc
Confidence 43
No 12
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=92.42 E-value=5.9 Score=40.11 Aligned_cols=279 Identities=14% Similarity=0.150 Sum_probs=141.9
Q ss_pred HHHHHHH--CCCChHHHHHHHhhccC--ChhhHHHHHHHHHh-CCCChhHHHHHHHhhCCccccCC-hhhHHHHHHHHHh
Q 008728 114 LIRWLKH--NGLSYPKIAKLICMSGG--NLESIRHLAEWLKS-VHVKGEFLGVALLKTGGNILERS-IEELNEIVEYLET 187 (556)
Q Consensus 114 ~~~~L~~--~G~s~~~i~~~~~~~~~--~~~~l~~~l~~L~~-lGls~~~i~~il~r~~P~lL~~s-~~~l~~~l~~L~s 187 (556)
....|+. +++|++++.+|..-.+. -.+.+...+..|+. +|+++.++..|-.. -. +.. .+.+...+..|..
T Consensus 131 ~~~~L~~apl~Lsp~qvVaIAsn~GGkqALeaV~~llpvL~~a~~Ls~~qVVaIAsn--~G--GkQALeaV~~llpvl~~ 206 (463)
T 4hpz_A 131 WRNALTGAPLNLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPQQVVAIASN--GG--GKQALETVQRLLPVLCQ 206 (463)
T ss_dssp THHHHHSTTTCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTS--TT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcCCCHHHHHHHHhcCccHHHHHHHHHHHHHHhhhcCCCHHHHHHHhhc--Cc--hHHHHHHHHHHHHHhhc
Confidence 3344554 68888888888763322 22455556666653 88888888866442 10 000 1233334444443
Q ss_pred -CCCChhhHHHHHhhCCCcccc-cHHHHHHHHHHHH-HcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHH-cCCCh
Q 008728 188 -NGVRRDWMGYVMSRCPQLLSQ-SIEEVKTRVHFYL-DMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKE-FGLST 263 (556)
Q Consensus 188 -~G~~~~~i~~lv~~~P~iL~~-s~~~l~~~v~fL~-~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~-lG~~~ 263 (556)
+|++++++..|-+..- +. -.+.+....-.|. ..|++.+++.+|-...-. ..-.+.+..-.-.|+. .|++.
T Consensus 207 ~~~Ls~aqVVaIAsn~G---GkQALeaV~~llpvl~~~~gls~aqVVaIAsn~GG---kQALeaV~~llP~L~~~~gls~ 280 (463)
T 4hpz_A 207 AHGLTPDQVVAIASHDG---GKQALETVQRLLPVLCQDHGLTPQQVVAIASNIGG---KQALETVQRLLPVLCQDHGLTP 280 (463)
T ss_dssp HHCCCHHHHHHHHSSTT---HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTH---HHHHHHHHHHHHHHHHTTCCCH
T ss_pred cccCCHHHHHHHhhccc---cHHHHHHHHhhhhhhhhhccCCHHHHHHHhcccch---HHHHHHHHhhchhhhhccCCCH
Confidence 7888888877754221 00 0122333333443 478888888877654311 1112233344444554 68888
Q ss_pred HHHHHHHhhCCcccccCcccchHHHHHHHHH-cCCChhhHHHHHhhCCcccccCccccchhHHHHHH-HhCCChhhHhhh
Q 008728 264 EDVGRLLAFRPHLMGCGIGERWKPLVKYLYY-LGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ-DIGVRDEGIANM 341 (556)
Q Consensus 264 ~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~-lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~-~lG~s~~~i~~~ 341 (556)
++|..|-..+-.--.. +.++...-.|+. .|++.++|..|-...-.-=. +| .+..-...|+ ..|++.++|..+
T Consensus 281 ~qVVaIAsN~GGkQAL---eaV~~l~p~Lr~~~~ls~~qVVaIAsN~GGkQA--Le-aV~~llp~Lr~~~~ls~~qVvaI 354 (463)
T 4hpz_A 281 DQVVAIASNDGGKQAL---ETVQRLLPVLCQDHGLTPEQVVAIASNGGGKQA--LE-TVQRLLPVLCQAHGLTPDQVVAI 354 (463)
T ss_dssp HHHHHHHTSTTHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHSSTTHHHH--HH-HHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHhhhhhcCccHHHHH---HHHHHHhHHHHhhcCCCHHHhhhhhcCcchHHH--HH-HHHHhhhhcchhccCCHHHhHhh
Confidence 8887666544221111 134445555553 78888888776554422111 12 2444455555 378888887666
Q ss_pred hhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhccceeeccchhhHHHHHHHHHH-hCCCHHHHHHH
Q 008728 342 LVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLS-LGIKLHQLGAM 414 (556)
Q Consensus 342 i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P~iL~~s~~~~l~~kv~~L~~-lG~~~~ei~~m 414 (556)
-...-.-=.+.--..+-|. |....|++..+|..|-...--- .-+ +.+....-.|.. .|++..+|..+
T Consensus 355 Asn~GGkQALeaV~~llpv---L~~a~gls~aqVVaIAsn~GGk--QAL-eaV~~llpvL~~a~gls~~qVVaI 422 (463)
T 4hpz_A 355 ASHDGGKQALETVQRLLPV---LCQDHGLTPAQAVAIANNNGGK--QAL-ETVQRLLPVLCQDHGLTPDQVVAI 422 (463)
T ss_dssp HTSTTHHHHHHHHHHHHHH---HHHHSCCCHHHHHHHHSSSSCH--HHH-HHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred hhcCccHHHHHHHHHHhHH---HHHHhCCCHHHhhhhhccCccH--HHH-HHHHHhchhhhhhccCCHHHhhhh
Confidence 5433211111111112233 3334788888777654321000 000 223333344443 68888877655
No 13
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=92.24 E-value=1.7 Score=37.15 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=54.6
Q ss_pred HHHHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHH------HhCCCChhhHHHHHhhCCCcccccHH---HH
Q 008728 143 RHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYL------ETNGVRRDWMGYVMSRCPQLLSQSIE---EV 213 (556)
Q Consensus 143 ~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L------~s~G~~~~~i~~lv~~~P~iL~~s~~---~l 213 (556)
+..+..|.++||+...+.+.+.+ .+. +...+++|| .+.|++..++...+..+. .+.. .-
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~-----~g~---~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~----~~~~~~~~~ 76 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKA-----AGA---NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQ----CSEEKMMEF 76 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH-----HCS---CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCS----SCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH-----HCc---CHHHHHHHHHHhchhcccCCChhhhHHHHHhcc----CCccccccC
Confidence 34566777788887777777665 111 344555554 345666666655554332 1221 12
Q ss_pred HHHHHHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHH
Q 008728 214 KTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLK 257 (556)
Q Consensus 214 ~~~v~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~ 257 (556)
...+.-|.++||+.+.+.+.+..+ ..++.+-++||.
T Consensus 77 ~~~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~ 112 (118)
T 4ae4_A 77 LQLMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLM 112 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence 345666677777777777776654 245566666664
No 14
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=91.43 E-value=7.4 Score=39.78 Aligned_cols=215 Identities=15% Similarity=0.176 Sum_probs=106.9
Q ss_pred hHHHHHHH-CCCChHHHHHHHhhccC--ChhhHHHHHHHHHh-CCCChhHHHHHHHhhCCccccCC-hhhHHHHHHHHH-
Q 008728 113 PLIRWLKH-NGLSYPKIAKLICMSGG--NLESIRHLAEWLKS-VHVKGEFLGVALLKTGGNILERS-IEELNEIVEYLE- 186 (556)
Q Consensus 113 ~~~~~L~~-~G~s~~~i~~~~~~~~~--~~~~l~~~l~~L~~-lGls~~~i~~il~r~~P~lL~~s-~~~l~~~l~~L~- 186 (556)
.....|+. +|++++++.+|-.--+. -.+.+...+..|.. +|+++.++..|-.. - =+.. .+.+...+-.|+
T Consensus 90 ~l~p~L~~a~gLs~~qVVaIAsn~GGkqALe~V~~~lpvL~~~~~Ls~~qVVaIAsn--~--GGkQALeaV~~llpvL~~ 165 (499)
T 3v6t_A 90 RLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH--D--GGKQALETVQALLPVLCQ 165 (499)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHSS--T--THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHhhhhhhcCccHHHHHHHHHhhHHhhhhcCCCHHHhHHHhhc--C--CcHHHHHHHHHhhHHHHH
Confidence 44555666 88888888877753211 12445555556654 78888888866331 0 0000 122223333343
Q ss_pred hCCCChhhHHHHHhhCCCcccc-cHHHHHHHHHHHHH-cCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHH-cCCCh
Q 008728 187 TNGVRRDWMGYVMSRCPQLLSQ-SIEEVKTRVHFYLD-MGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKE-FGLST 263 (556)
Q Consensus 187 s~G~~~~~i~~lv~~~P~iL~~-s~~~l~~~v~fL~~-lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~-lG~~~ 263 (556)
.+|++++++..|-+..- +. -.+.+...+-.|.. .|++.+++..|-...-. ..--+.+....-.|+. .|++.
T Consensus 166 a~gls~~qVvaIAsN~G---GkQALeaV~~llpvl~~~~gls~~qVVaiAsn~GG---kQALeaV~~llp~L~~a~~ls~ 239 (499)
T 3v6t_A 166 AHGLTPEQVVAIASNGG---GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG---KQALETVQRLLPVLCQAHGLTP 239 (499)
T ss_dssp TSCCCHHHHHHHHSSTT---HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTH---HHHHHHHHHHHHHHTTTSCCCH
T ss_pred hcCCCHHHHHHHhcccc---hHHHHHHHHHhhhhHHhhccCCHHHHHHHhhccch---HHHHHHHHHhhhHHHhhcCCCH
Confidence 38888888877754211 00 01223333344443 78888888876554311 0011223333334443 58888
Q ss_pred HHHHHHHhhCCcccccCcccchHHHHHHHHH-cCCChhhHHHHHhhCCcccccCccccchhHHHHHH-HhCCChhhHhhh
Q 008728 264 EDVGRLLAFRPHLMGCGIGERWKPLVKYLYY-LGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ-DIGVRDEGIANM 341 (556)
Q Consensus 264 ~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~-lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~-~lG~s~~~i~~~ 341 (556)
.+|..+-...-.--. . +.+....-.|+. .|++.++|..|-...-.-=. +| .+..-...|+ ..|++.++|..|
T Consensus 240 ~qVvaIAsN~GGkQA--L-eaV~~~lpvl~~~~~lt~aqVVaIAsn~GGkQA--Le-aV~~llpvL~~~~~L~~~qVvaI 313 (499)
T 3v6t_A 240 QQVVAIASNGGGKQA--L-ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQA--LE-TVQRLLPVLCQAHGLTPQQVVAI 313 (499)
T ss_dssp HHHHHHHHSSCHHHH--H-HHHHHHHHHHHHHHCCCHHHHHHHHSSTTHHHH--HH-HHHHHHHHHHTTTCSCHHHHHHH
T ss_pred HHhhhhhcccchHHH--H-HHHHHhcccccccccCCHHHeeeeccCCccHHH--HH-HHHHhhHHHHHhcCCCHHHHHHH
Confidence 877665543321000 1 133344444553 77888777765432211000 11 2333344444 457777776555
Q ss_pred hh
Q 008728 342 LV 343 (556)
Q Consensus 342 i~ 343 (556)
-.
T Consensus 314 As 315 (499)
T 3v6t_A 314 AS 315 (499)
T ss_dssp HT
T ss_pred hh
Confidence 33
No 15
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=90.80 E-value=6.6 Score=40.12 Aligned_cols=208 Identities=13% Similarity=0.158 Sum_probs=121.1
Q ss_pred HCCCChHHHHHHHhhccC--ChhhHHHHHHHHHh-CCCChhHHHHHHHhhCCccccC-ChhhHHHHHHHHHh-CCCChhh
Q 008728 120 HNGLSYPKIAKLICMSGG--NLESIRHLAEWLKS-VHVKGEFLGVALLKTGGNILER-SIEELNEIVEYLET-NGVRRDW 194 (556)
Q Consensus 120 ~~G~s~~~i~~~~~~~~~--~~~~l~~~l~~L~~-lGls~~~i~~il~r~~P~lL~~-s~~~l~~~l~~L~s-~G~~~~~ 194 (556)
-++++++++.+|..-.+. -.+.+...+..|.. +|+++.++..|-.. -- +. -.+.+...+..|.. +|+++++
T Consensus 64 pl~ls~~qvvaIA~n~GGkqAleaV~~l~p~L~~a~gLs~~qVVaIAsn--~G--GkqALe~V~~~lpvL~~~~~Ls~~q 139 (499)
T 3v6t_A 64 PLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH--DG--GKQALETVQRLLPVLCQAHGLTPEQ 139 (499)
T ss_dssp TTCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHSS--TT--HHHHHHHHHHHHHHHHHTSCCCHHH
T ss_pred CcCCCHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCHHHhhhhhhc--Cc--cHHHHHHHHHhhHHhhhhcCCCHHH
Confidence 369999999998863322 12445555556655 99999999876442 00 00 01233444445554 8999999
Q ss_pred HHHHHhhCCCcccc-cHHHHHHHHHHHH-HcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHH-cCCChHHHHHHHh
Q 008728 195 MGYVMSRCPQLLSQ-SIEEVKTRVHFYL-DMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKE-FGLSTEDVGRLLA 271 (556)
Q Consensus 195 i~~lv~~~P~iL~~-s~~~l~~~v~fL~-~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~-lG~~~~~I~~ll~ 271 (556)
+..|-+..- +. -.+.+...+-.|. ..|++++++.+|-...-. ..-.+.+..-.-.|+. .|+++++|..|-.
T Consensus 140 VVaIAsn~G---GkQALeaV~~llpvL~~a~gls~~qVvaIAsN~GG---kQALeaV~~llpvl~~~~gls~~qVVaiAs 213 (499)
T 3v6t_A 140 VVAIASHDG---GKQALETVQALLPVLCQAHGLTPEQVVAIASNGGG---KQALETVQRLLPVLCQAHGLTPQQVVAIAS 213 (499)
T ss_dssp HHHHHSSTT---HHHHHHHHHHHHHHHHHTSCCCHHHHHHHHSSTTH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHS
T ss_pred hHHHhhcCC---cHHHHHHHHHhhHHHHHhcCCCHHHHHHHhcccch---HHHHHHHHHhhhhHHhhccCCHHHHHHHhh
Confidence 988753211 00 0122444444554 489999999986654211 0112334444445555 8999999987654
Q ss_pred hCCcccccCcccchHHHHHHHHH-cCCChhhHHHHHhhCCcccccCccccchhHHHHHH-HhCCChhhHhhhhh
Q 008728 272 FRPHLMGCGIGERWKPLVKYLYY-LGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQ-DIGVRDEGIANMLV 343 (556)
Q Consensus 272 ~~P~lL~~s~e~~l~~~v~~L~~-lGls~~~i~~il~~~P~iL~~~~e~~l~~kv~~L~-~lG~s~~~i~~~i~ 343 (556)
.+-.--. . +.++...-.|+. .|++..+|..|-...-.-=. ++ .+..-.-.|+ ..|++.++|..+-.
T Consensus 214 n~GGkQA--L-eaV~~llp~L~~a~~ls~~qVvaIAsN~GGkQA--Le-aV~~~lpvl~~~~~lt~aqVVaIAs 281 (499)
T 3v6t_A 214 NGGGKQA--L-ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQA--LE-TVQRLLPVLCQAHGLTPQQVVAIAS 281 (499)
T ss_dssp STTHHHH--H-HHHHHHHHHHTTTSCCCHHHHHHHHHSSCHHHH--HH-HHHHHHHHHHHHHCCCHHHHHHHHS
T ss_pred ccchHHH--H-HHHHHhhhHHHhhcCCCHHHhhhhhcccchHHH--HH-HHHHhcccccccccCCHHHeeeecc
Confidence 3311101 1 245555555664 79999999887765532111 12 2444445555 48999999877643
No 16
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=87.56 E-value=1.1 Score=32.49 Aligned_cols=33 Identities=6% Similarity=0.132 Sum_probs=26.5
Q ss_pred hccceeeccchhhHHHHHHHHHHhCCCHHHHHHHHhh
Q 008728 381 LGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIAD 417 (556)
Q Consensus 381 ~~P~iL~~s~~~~l~~kv~~L~~lG~~~~ei~~ml~~ 417 (556)
.+|.+-.. -+..|++||++.|++.+||..++.+
T Consensus 21 ~dp~V~~s----p~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 21 QNSRVRQS----PLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HCTTGGGS----CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CChhhhcC----CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 45666443 4778999999999999999988765
No 17
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=87.48 E-value=12 Score=31.67 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=54.4
Q ss_pred HHHHHHHhCCCChhhHHHHHhhCCCcccccHHHHHHHH---HHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHHH
Q 008728 180 EIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRV---HFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYL 256 (556)
Q Consensus 180 ~~l~~L~s~G~~~~~i~~lv~~~P~iL~~s~~~l~~~v---~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L 256 (556)
..+..|.+.||+...+.+.+..+- . +++.....+ .-|.+.|+++.++-..+..+..--. ........|.-|
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl~~~g---~-~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~--~~~~~~~~v~~L 83 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAMKAAG---A-NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEE--KMMEFLQLMSKF 83 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHC---S-CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHC---c-CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCcc--ccccCHHHHHHH
Confidence 356667777888777777766544 2 343322111 1233567777666666554321100 011233456667
Q ss_pred HHcCCChHHHHHHHhhCCcccccCcccchHHHHHHHH
Q 008728 257 KEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLY 293 (556)
Q Consensus 257 ~~lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~ 293 (556)
.++||+...+.+.+..+ .+++..-++||.
T Consensus 84 ~eMGF~~~~a~~AL~~~--------~nd~erAlewL~ 112 (118)
T 4ae4_A 84 KEMGFELKDIKEVLLLH--------NNDQDNALEDLM 112 (118)
T ss_dssp HHTTCCHHHHHHHHHHT--------TTCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence 77777777776666543 235666666665
No 18
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=81.98 E-value=2.5 Score=32.37 Aligned_cols=34 Identities=6% Similarity=0.106 Sum_probs=27.1
Q ss_pred hccceeeccchhhHHHHHHHHHHhCCCHHHHHHHHhhc
Q 008728 381 LGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAMIADF 418 (556)
Q Consensus 381 ~~P~iL~~s~~~~l~~kv~~L~~lG~~~~ei~~ml~~~ 418 (556)
.+|.+-.. -+..|++||++.|++.+||..++.+.
T Consensus 26 qdp~V~~s----p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 26 QNSRVRQS----PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CSTTGGGS----CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CChhhhhC----CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 46666433 37789999999999999999888763
No 19
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=80.31 E-value=20 Score=32.52 Aligned_cols=137 Identities=9% Similarity=0.042 Sum_probs=80.0
Q ss_pred HHHHHHHCCCChHHHHHHHhhccCChhhHHHHHHHHHhCCC-ChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCCCCh
Q 008728 114 LIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHV-KGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRR 192 (556)
Q Consensus 114 ~~~~L~~~G~s~~~i~~~~~~~~~~~~~l~~~l~~L~~lGl-s~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G~~~ 192 (556)
.+.+|....-|..++..-.....++.+.+..+++.|.+.|+ +....+....+ .- +- ....-...+..-|+..|++.
T Consensus 24 Al~~Ls~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr-~~-~~-~~~~G~~~I~~eL~~KGI~~ 100 (177)
T 3e3v_A 24 ALNYLSYQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVR-TM-MN-TSDKGPKVIKLNLSKKGIDD 100 (177)
T ss_dssp HHHHHHSSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHH-HH-HH-HCCCCHHHHHHHHHTTTCCH
T ss_pred HHHHhccccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HH-HH-cccccHHHHHHHHHHcCCCH
Confidence 45666666777777766655556677888888999998887 45555544443 11 00 00112334456788899999
Q ss_pred hhHHHHHhhCCCcccccHH-HHHHHHHHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCChHHHHHHHh
Q 008728 193 DWMGYVMSRCPQLLSQSIE-EVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLA 271 (556)
Q Consensus 193 ~~i~~lv~~~P~iL~~s~~-~l~~~v~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~~~~I~~ll~ 271 (556)
+.|...+...+ .+ ........++ +-+..++.. ...+.-...+.||..-|++.+.|..++.
T Consensus 101 ~~I~~al~~~~------~~de~e~a~~l~~----------Kk~~~~~~~---~~~~~~~K~~~~L~rrGF~~~~I~~vl~ 161 (177)
T 3e3v_A 101 NIAEDALILYT------DKLQVEKGVTLAE----------KLANRYSHD---SYRNKQNKIKQSLLTKGFSYDIIDTIIQ 161 (177)
T ss_dssp HHHHHHHTTSC------HHHHHHHHHHHHH----------HHHHHTTTS---CHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhCC------chhHHHHHHHHHH----------HHHhhccCC---ChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 99888886532 22 1222222221 111122211 1223345667799999999998888776
Q ss_pred h
Q 008728 272 F 272 (556)
Q Consensus 272 ~ 272 (556)
.
T Consensus 162 ~ 162 (177)
T 3e3v_A 162 E 162 (177)
T ss_dssp H
T ss_pred H
Confidence 4
No 20
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=79.31 E-value=34 Score=30.41 Aligned_cols=137 Identities=14% Similarity=0.137 Sum_probs=81.0
Q ss_pred hHHHHHHHCCCChHHHHHHHhhccCChhhHHHHHHHHHhCCC-ChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCCCC
Q 008728 113 PLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHV-KGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVR 191 (556)
Q Consensus 113 ~~~~~L~~~G~s~~~i~~~~~~~~~~~~~l~~~l~~L~~lGl-s~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G~~ 191 (556)
..+++|....-|..++..-....+++.+.+..+++.|.+.|+ +....+....+..-. -+.. ...+..-|...|++
T Consensus 22 ~Al~~Ls~r~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~-~~~G---~~~I~~eL~~KGI~ 97 (162)
T 3dfg_A 22 RALGLLVHREHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRAS-SGYG---PLHIRAELGTHGLD 97 (162)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHT-TTCC---HHHHHHHHHHTTCC
T ss_pred HHHHHhhchhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-cccc---HHHHHHHHHHcCCC
Confidence 467777777788888776666556677888889999998887 444444443321100 0122 33456678889999
Q ss_pred hhhHHHHHhhCCCcccccHHHHHHHHHHHHHcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCChHHHHHHHh
Q 008728 192 RDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLA 271 (556)
Q Consensus 192 ~~~i~~lv~~~P~iL~~s~~~l~~~v~fL~~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~~~~I~~ll~ 271 (556)
.+.|...+.... .++.+ .....++. ++... .......-...+.||..-|++.+.|..++.
T Consensus 98 ~~~I~~al~~~~----~de~e--~a~~l~~K-------------k~~~~-~~~~~~~k~K~~~~L~rrGF~~~~I~~~l~ 157 (162)
T 3dfg_A 98 SDAVSAAMATFE----GDWTE--NALDLIRR-------------RFGED-GPVDLAQRRKAADLLARRGFDGNSIRLATR 157 (162)
T ss_dssp HHHHHHHHTTCC----SCHHH--HHHHHHHH-------------HHCTT-CCCSHHHHHHHHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHHHhCc----HhHHH--HHHHHHHH-------------hcCCC-CCCCHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 998888887654 13321 11122211 11110 011123345667788888888888877765
Q ss_pred hC
Q 008728 272 FR 273 (556)
Q Consensus 272 ~~ 273 (556)
..
T Consensus 158 ~~ 159 (162)
T 3dfg_A 158 FD 159 (162)
T ss_dssp C-
T ss_pred cC
Confidence 43
No 21
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=74.21 E-value=2.8 Score=43.03 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhC
Q 008728 286 KPLVKYLYYLGVSRDGMRRMLVIK 309 (556)
Q Consensus 286 ~~~v~~L~~lGls~~~i~~il~~~ 309 (556)
+..|+-|.++||+...+.+.+..+
T Consensus 326 ~eaI~rL~~mGF~~~~a~~al~a~ 349 (368)
T 1oqy_A 326 KEAIERLKALGFPESLVIQAYFAC 349 (368)
T ss_dssp HHHHHHHHHHTCCSHHHHHHTSSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 467888888999998888887777
No 22
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=73.58 E-value=2 Score=44.05 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHh
Q 008728 213 VKTRVHFYLDMGMNKNDFGTMVFD 236 (556)
Q Consensus 213 l~~~v~fL~~lG~s~~~l~~ll~~ 236 (556)
....|.-|.++|++..++.+.++.
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a 191 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRA 191 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHH
Confidence 334455555555555555555554
No 23
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=73.05 E-value=7.9 Score=28.06 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=13.2
Q ss_pred HHHHHHHHHhCCCChhhHHHHHhh
Q 008728 178 LNEIVEYLETNGVRRDWMGYVMSR 201 (556)
Q Consensus 178 l~~~l~~L~s~G~~~~~i~~lv~~ 201 (556)
+..+++||++.|++.++|...+.+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 334555666666666665555543
No 24
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=68.00 E-value=79 Score=29.50 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHH
Q 008728 249 MHQKVTYLKEFGLSTEDVGRLL 270 (556)
Q Consensus 249 l~~~v~~L~~lG~~~~~I~~ll 270 (556)
-...+.||..-|++.+.|..++
T Consensus 182 k~K~~~~L~rrGFs~~~I~~vl 203 (221)
T 3d5l_A 182 EQKVQQGLTTKGFSSSVYEMIK 203 (221)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHH
Confidence 3444455555555555554444
No 25
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=55.98 E-value=70 Score=28.13 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=76.9
Q ss_pred HHHHHHHCCCChHHHHHHHhh-----cc-----CChhhHHHHHHHHHhCCC-ChhHHHHHHHhhCCccccCChhhHHHHH
Q 008728 114 LIRWLKHNGLSYPKIAKLICM-----SG-----GNLESIRHLAEWLKSVHV-KGEFLGVALLKTGGNILERSIEELNEIV 182 (556)
Q Consensus 114 ~~~~L~~~G~s~~~i~~~~~~-----~~-----~~~~~l~~~l~~L~~lGl-s~~~i~~il~r~~P~lL~~s~~~l~~~l 182 (556)
.+++|....-|..++..-... .. ++.+.+..+++.|.+.|+ +....+....+ .- + ... .-...+.
T Consensus 11 Al~~Ls~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~-~~-~-~~g-~G~~~I~ 86 (159)
T 3c1d_A 11 AVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIA-SR-S-RKG-YGPARIR 86 (159)
T ss_dssp HHHHHTTSCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHH-HH-H-HTT-CCHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHH-HH-H-hCC-ccHHHHH
Confidence 455666666777776655442 13 577788899999999888 44444444443 11 1 111 1234456
Q ss_pred HHHHhCCCChhhHHHHHhhCCCcccccHHHHHHHHHHHH-HcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCC
Q 008728 183 EYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYL-DMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGL 261 (556)
Q Consensus 183 ~~L~s~G~~~~~i~~lv~~~P~iL~~s~~~l~~~v~fL~-~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~ 261 (556)
.-|...|++.+.|...+..... ++.. .....++ .+|- -.. .....-...+.||..-|+
T Consensus 87 ~eL~~KGI~~~~i~~al~~~~~----d~~~--~a~~l~~kk~~~--------------~~~-~~~~~~~K~~~~L~rrGF 145 (159)
T 3c1d_A 87 QELNQKGISREATEKAMREADI----DWAA--LARDQATRKYGE--------------PLP-TVFSEKVKIQRFLLYRGY 145 (159)
T ss_dssp HHHHHTTCCHHHHHHHHHHHCC----CHHH--HHHHHHHHHHCS--------------SCC-CSHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCHHHHHHHHHHcCH----hHHH--HHHHHHHHHcCC--------------CCC-CCHHHHHHHHHHHHHCCC
Confidence 7788999999998888876542 3322 1111221 2221 000 122345677889999999
Q ss_pred ChHHHHHHHh
Q 008728 262 STEDVGRLLA 271 (556)
Q Consensus 262 ~~~~I~~ll~ 271 (556)
+.+.|..++.
T Consensus 146 ~~~~i~~~l~ 155 (159)
T 3c1d_A 146 LMEDIQDIWR 155 (159)
T ss_dssp CHHHHTTCC-
T ss_pred CHHHHHHHHH
Confidence 9988866554
No 26
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=55.42 E-value=22 Score=27.10 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=13.0
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHh
Q 008728 142 IRHLAEWLKSVHVKGEFLGVALLK 165 (556)
Q Consensus 142 l~~~l~~L~~lGls~~~i~~il~r 165 (556)
+..+++||++-|++.++|..++.+
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~r 58 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQ 58 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445555555555555555555443
No 27
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=54.83 E-value=7 Score=28.18 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCCCC
Q 008728 140 ESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVR 191 (556)
Q Consensus 140 ~~l~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G~~ 191 (556)
+..+..++-|.++||+.+.+...|.+ ...+.+.+.++||...+++
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~-------Tg~~Gle~AmewL~k~~~~ 51 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQ-------TGSRSIEAALEYISKMSGP 51 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHH-------HTSCCHHHHHHHHHHHSCS
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHH-------hCcccHHHHHHHHHHhcCC
Confidence 34455566777777777666655554 1223477777777665554
No 28
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=53.16 E-value=26 Score=25.00 Aligned_cols=40 Identities=23% Similarity=0.166 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCC-ChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCC
Q 008728 142 IRHLAEWLKSVHV-KGEFLGVALLKTGGNILERSIEELNEIVEYLETNG 189 (556)
Q Consensus 142 l~~~l~~L~~lGl-s~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G 189 (556)
....++-|.++|| +.....++|.. ...++...++||-+.+
T Consensus 11 ~~~~l~~L~~MGF~~~~~~~~AL~~--------t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 11 FQQQLEQLNSMGFINREANLQALIA--------TGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHH--------HTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHH--------hCCCHHHHHHHHHHcC
Confidence 4556667777777 55554544443 2234566666665544
No 29
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=47.88 E-value=40 Score=29.63 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=27.3
Q ss_pred hCCCcccccHHHHHHHHHHHHHcCCChhHHHHHHHhC
Q 008728 201 RCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDY 237 (556)
Q Consensus 201 ~~P~iL~~s~~~l~~~v~fL~~lG~s~~~l~~ll~~~ 237 (556)
..|.-+.++.+++...|.-|..-|+++.+|+-+++..
T Consensus 23 ~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 59 (153)
T 2xzm_O 23 RSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQ 59 (153)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred CCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhc
Confidence 4566777777777777777777788888877777654
No 30
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=45.61 E-value=33 Score=24.02 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCCChhHHHHHHHh
Q 008728 143 RHLAEWLKSVHVKGEFLGVALLK 165 (556)
Q Consensus 143 ~~~l~~L~~lGls~~~i~~il~r 165 (556)
...+.-|.++||+..++.+.|..
T Consensus 9 ~~~i~~L~~MGF~~~~a~~AL~~ 31 (49)
T 1ify_A 9 ETMLTEIMSMGYERERVVAALRA 31 (49)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 44556666666666666655553
No 31
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=45.59 E-value=52 Score=23.37 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCC-ChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcC
Q 008728 212 EVKTRVHFYLDMGM-NKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFG 260 (556)
Q Consensus 212 ~l~~~v~fL~~lG~-s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG 260 (556)
.....|+-|.++|+ +.....+.+.. ...++...++||.+.+
T Consensus 10 ~~~~~l~~L~~MGF~~~~~~~~AL~~--------t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 10 RFQQQLEQLNSMGFINREANLQALIA--------TGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHH--------HTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH--------hCCCHHHHHHHHHHcC
Confidence 34556666666666 55554554443 2235566666665543
No 32
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=41.62 E-value=25 Score=24.63 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHH
Q 008728 393 KLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRR 438 (556)
Q Consensus 393 ~l~~kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~ 438 (556)
.-..+++-|.++||+.+++...++.+- ..+..-++||.+
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASY-------NNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTT-------SCSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHh
Confidence 356778999999999999988887542 145556677765
No 33
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=40.65 E-value=41 Score=29.54 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=26.2
Q ss_pred hCCCcccccHHHHHHHHHHHHHcCCChhHHHHHHHhC
Q 008728 201 RCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDY 237 (556)
Q Consensus 201 ~~P~iL~~s~~~l~~~v~fL~~lG~s~~~l~~ll~~~ 237 (556)
..|.-+.++.+++...|.-|.+-|+++.+|+-+++..
T Consensus 21 ~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 57 (151)
T 3u5c_N 21 NAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDA 57 (151)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhcc
Confidence 4566667777777777777777777777777766643
No 34
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=39.11 E-value=2.1e+02 Score=25.50 Aligned_cols=137 Identities=13% Similarity=0.056 Sum_probs=77.3
Q ss_pred HHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCCCCh-hhHHHHHhhCCCcc-cccHHHHHHHHHHHHH
Q 008728 145 LAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRR-DWMGYVMSRCPQLL-SQSIEEVKTRVHFYLD 222 (556)
Q Consensus 145 ~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G~~~-~~i~~lv~~~P~iL-~~s~~~l~~~v~fL~~ 222 (556)
.+.+|..---|..++.+-|.+ -+.+.+.+..+++.|...|+-. ...+..+.+.-.-. .+++..| ..-|+.
T Consensus 24 Al~~Ls~r~~S~~EL~~KL~~-----kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I---~~eL~~ 95 (177)
T 3e3v_A 24 ALNYLSYQLRTRKEVEDKLRS-----LDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVI---KLNLSK 95 (177)
T ss_dssp HHHHHHSSCCCHHHHHTTSGG-----GTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHH---HHHHHT
T ss_pred HHHHhccccccHHHHHHHHHH-----cCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHH---HHHHHH
Confidence 344555556667777655544 2456777888999999998853 33443333211000 1333333 245678
Q ss_pred cCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCChHHHHHHHhhCCcccccCcccchHHHHHHHHHcCCChhhH
Q 008728 223 MGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGM 302 (556)
Q Consensus 223 lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~lGls~~~i 302 (556)
-|++...|...+..++ ..+........+.. .+...+. .+..+.-...+.||..=||+.+.|
T Consensus 96 KGI~~~~I~~al~~~~------~~de~e~a~~l~~K----------k~~~~~~---~~~~~~~~K~~~~L~rrGF~~~~I 156 (177)
T 3e3v_A 96 KGIDDNIAEDALILYT------DKLQVEKGVTLAEK----------LANRYSH---DSYRNKQNKIKQSLLTKGFSYDII 156 (177)
T ss_dssp TTCCHHHHHHHHTTSC------HHHHHHHHHHHHHH----------HHHHTTT---SCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cCCCHHHHHHHHHhCC------chhHHHHHHHHHHH----------HHhhccC---CChHHHHHHHHHHHHHCCCCHHHH
Confidence 8999999988886542 12222222222221 1111111 111223456788999999999999
Q ss_pred HHHHhh
Q 008728 303 RRMLVI 308 (556)
Q Consensus 303 ~~il~~ 308 (556)
..++..
T Consensus 157 ~~vl~~ 162 (177)
T 3e3v_A 157 DTIIQE 162 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988865
No 35
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=37.97 E-value=54 Score=23.41 Aligned_cols=21 Identities=19% Similarity=-0.190 Sum_probs=10.3
Q ss_pred HHHHHHHhCCCChhHHHHHHH
Q 008728 144 HLAEWLKSVHVKGEFLGVALL 164 (556)
Q Consensus 144 ~~l~~L~~lGls~~~i~~il~ 164 (556)
..++-|-++|++..++.+.|.
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~ 33 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALE 33 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 444445555555555544444
No 36
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=36.29 E-value=84 Score=26.47 Aligned_cols=36 Identities=11% Similarity=-0.067 Sum_probs=19.9
Q ss_pred HHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHh
Q 008728 145 LAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLET 187 (556)
Q Consensus 145 ~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s 187 (556)
.+.-|.++||+.....+.|.. +. ..++...++||-.
T Consensus 6 ~l~~L~~MGF~~~~a~~AL~~-t~------n~~~e~A~~wL~~ 41 (126)
T 2lbc_A 6 SVMQLAEMGFPLEACRKAVYF-TG------NMGAEVAFNWIIV 41 (126)
T ss_dssp HHHHHHTTSSCCHHHHHHHHH-HT------SCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH-cC------CCCHHHHHHHHHH
Confidence 445566677777666665554 11 1245556666644
No 37
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=36.06 E-value=68 Score=20.81 Aligned_cols=20 Identities=20% Similarity=-0.137 Sum_probs=10.0
Q ss_pred HHHHHHhCCCChhHHHHHHH
Q 008728 145 LAEWLKSVHVKGEFLGVALL 164 (556)
Q Consensus 145 ~l~~L~~lGls~~~i~~il~ 164 (556)
.++-|.++||+..+..+.+.
T Consensus 7 ~i~~L~~mGf~~~~a~~AL~ 26 (40)
T 1z96_A 7 KIAQLVSMGFDPLEAAQALD 26 (40)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 44455555555555444444
No 38
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.52 E-value=60 Score=25.62 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHHhCC
Q 008728 395 EVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVR 442 (556)
Q Consensus 395 ~~kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~mg~ 442 (556)
..+|+-|..|||+.+++..+++.+ -..+..-++||....|-
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t-------~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVF-------GGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHT-------TTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHhCCCC
Confidence 567888999999999998887744 23578889999987773
No 39
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=34.78 E-value=47 Score=22.27 Aligned_cols=22 Identities=27% Similarity=0.034 Sum_probs=13.2
Q ss_pred HHHHHHHhCCCChhHHHHHHHh
Q 008728 144 HLAEWLKSVHVKGEFLGVALLK 165 (556)
Q Consensus 144 ~~l~~L~~lGls~~~i~~il~r 165 (556)
+.++-|.++||+..+..+.+..
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~ 27 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEK 27 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4556666666666666555553
No 40
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=34.59 E-value=1.9e+02 Score=24.05 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=44.6
Q ss_pred hhhHHHHHH-HC--CCChHHHHHHHhhc--cCChhhHHHHHHHHH-hCCCChhHHHHHHHhhCCccccCChhhHHHHHHH
Q 008728 111 VVPLIRWLK-HN--GLSYPKIAKLICMS--GGNLESIRHLAEWLK-SVHVKGEFLGVALLKTGGNILERSIEELNEIVEY 184 (556)
Q Consensus 111 ~~~~~~~L~-~~--G~s~~~i~~~~~~~--~~~~~~l~~~l~~L~-~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~ 184 (556)
+.+++.||+ .| |++..+-.-+.-.. ..+-+.+..+...|. +-.++..+|...|.+ - .--.-+.+++..+-+-
T Consensus 10 l~siv~WLRAGYP~GVP~~Dy~PLLALL~r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~-v-t~~~Ps~eDI~RV~ar 87 (112)
T 2lky_A 10 LAKIAAWLNAGYPEGVPGPDRVPLLALLTRRLTNDEIKAIAEDLEKRAHFDHIDIGVLITQ-M-TDEMPREEDIERVRRH 87 (112)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHCCCSCCCSHHHHHH-H-TTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHcccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-H-hccCCCHHHHHHHHHH
Confidence 345667775 34 77776655444322 345566777776664 334666667666665 0 0001234667777777
Q ss_pred HHhCCCC
Q 008728 185 LETNGVR 191 (556)
Q Consensus 185 L~s~G~~ 191 (556)
|...|.+
T Consensus 88 Laa~GWP 94 (112)
T 2lky_A 88 LALQGWP 94 (112)
T ss_dssp HHTTCCG
T ss_pred HHhcCCC
Confidence 7777765
No 41
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=33.47 E-value=41 Score=23.34 Aligned_cols=24 Identities=13% Similarity=0.357 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHh
Q 008728 393 KLEVNVKYFLSLGIKLHQLGAMIA 416 (556)
Q Consensus 393 ~l~~kv~~L~~lG~~~~ei~~ml~ 416 (556)
.++..|..|.++||+.+++.+.+.
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ 26 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALV 26 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHH
Confidence 466778899999999999987765
No 42
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=32.99 E-value=2e+02 Score=23.51 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=42.1
Q ss_pred hhHHHHHH-HC--CCChHHHHHHHhhc--cCChhhHHHHHHHHHhC-CCChhHHHHHHHhhCCccccCChhhHHHHHHHH
Q 008728 112 VPLIRWLK-HN--GLSYPKIAKLICMS--GGNLESIRHLAEWLKSV-HVKGEFLGVALLKTGGNILERSIEELNEIVEYL 185 (556)
Q Consensus 112 ~~~~~~L~-~~--G~s~~~i~~~~~~~--~~~~~~l~~~l~~L~~l-Gls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L 185 (556)
.+++.||+ .| |++..+-.-+.-.. ..+-+.+..+...|..- .++..+|+..|.+ =.=-.-+.+++..+-+-|
T Consensus 9 ~siv~WLRaGYP~GVP~~Dy~PLlALL~r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~--vt~~~Ps~eDI~RV~arL 86 (103)
T 2kvc_A 9 TSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIGVVITH--FTDELPSPEDVERVRARL 86 (103)
T ss_dssp HHHHHHHHHHCTTCCCHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTSSCSSCHHHHHHS--CCSSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH--HhccCCCHHHHHHHHHHH
Confidence 34566665 33 66666654444321 34555666666666432 3666677666664 110112345666666667
Q ss_pred HhCCCC
Q 008728 186 ETNGVR 191 (556)
Q Consensus 186 ~s~G~~ 191 (556)
...|.+
T Consensus 87 aa~GWP 92 (103)
T 2kvc_A 87 AAQGWP 92 (103)
T ss_dssp GGGCCC
T ss_pred HhcCCC
Confidence 666655
No 43
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=32.68 E-value=42 Score=24.91 Aligned_cols=47 Identities=4% Similarity=0.009 Sum_probs=24.2
Q ss_pred HhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCCCChhhHHH
Q 008728 150 KSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGY 197 (556)
Q Consensus 150 ~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G~~~~~i~~ 197 (556)
+.+|++.+.+.+++.. .+.-...+.+....+.+..+.+|..+...++
T Consensus 8 ~~aGVS~sTVSrvLng-~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~ 54 (65)
T 1uxc_A 8 RLAGVSRTTASYVING-KAKQYRVSDKTVEKVMAVVREHNYHPNAVAA 54 (65)
T ss_dssp HHHTSCHHHHHHHHHT-CTTTTTCTTHHHHHHHHHHHHHTCCCC----
T ss_pred HHHCcCHHHHHHHHcC-CCCCCCCCHHHHHHHHHHHHHhCCCccHHHH
Confidence 4457777777766663 4411123445555555666666666655543
No 44
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=31.94 E-value=91 Score=22.24 Aligned_cols=22 Identities=5% Similarity=0.030 Sum_probs=11.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHh
Q 008728 215 TRVHFYLDMGMNKNDFGTMVFD 236 (556)
Q Consensus 215 ~~v~fL~~lG~s~~~l~~ll~~ 236 (556)
..|+-|.++|++..++.+.+..
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4445555555555555555443
No 45
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=31.93 E-value=96 Score=27.25 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=13.8
Q ss_pred cCChhhHHHHHHHHHhCCCChhHHHHHHH
Q 008728 136 GGNLESIRHLAEWLKSVHVKGEFLGVALL 164 (556)
Q Consensus 136 ~~~~~~l~~~l~~L~~lGls~~~i~~il~ 164 (556)
.++++.+.+.+--|.+-|+++++|+-+|.
T Consensus 29 ~~~~eeVe~~I~klakkG~tpSqIG~iLR 57 (153)
T 2xzm_O 29 HMTPSTVVDLSVKLAKKGLTPSQIGVILR 57 (153)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCHHHhhhHHh
Confidence 33444444444444445555555554333
No 46
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=30.50 E-value=1e+02 Score=20.56 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=13.2
Q ss_pred hHHHHHHHCCCChHHHHHHHh
Q 008728 113 PLIRWLKHNGLSYPKIAKLIC 133 (556)
Q Consensus 113 ~~~~~L~~~G~s~~~i~~~~~ 133 (556)
+-+..|+.-||+|++++.+..
T Consensus 7 selqalkkegfspeelaales 27 (48)
T 1g6u_A 7 SELQALKKEGFSPEELAALES 27 (48)
T ss_dssp HHHHHHHHTTCSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 344556667777777766654
No 47
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=30.11 E-value=55 Score=24.27 Aligned_cols=16 Identities=6% Similarity=0.162 Sum_probs=7.4
Q ss_pred cCCChhHHHHHHHhCC
Q 008728 223 MGMNKNDFGTMVFDYP 238 (556)
Q Consensus 223 lG~s~~~l~~ll~~~P 238 (556)
+|++...+.+++...+
T Consensus 10 aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 10 AGVSRTTASYVINGKA 25 (65)
T ss_dssp HTSCHHHHHHHHHTCT
T ss_pred HCcCHHHHHHHHcCCC
Confidence 3444444444444433
No 48
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=29.45 E-value=68 Score=22.66 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=10.4
Q ss_pred HHHHHHHHhCCC-ChhHHHHHHH
Q 008728 143 RHLAEWLKSVHV-KGEFLGVALL 164 (556)
Q Consensus 143 ~~~l~~L~~lGl-s~~~i~~il~ 164 (556)
.+.++-|.++|| +.....++|.
T Consensus 13 ~~~l~~L~~MGF~~~~~~~~AL~ 35 (52)
T 2jy5_A 13 QQQLEQLSAMGFLNREANLQALI 35 (52)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHH
Confidence 344555555555 4433333333
No 49
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.01 E-value=82 Score=23.29 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=21.0
Q ss_pred HHHHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHh
Q 008728 143 RHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLET 187 (556)
Q Consensus 143 ~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s 187 (556)
...++-|.++||+..+..+.|.. ...++...++||-+
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~--------~~~nve~A~e~L~~ 46 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMD--------NGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHH--------TTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH--------hCCCHHHHHHHHHH
Confidence 34566666777776666655554 12245556666644
No 50
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=28.64 E-value=69 Score=27.04 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHHhC
Q 008728 395 EVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMV 441 (556)
Q Consensus 395 ~~kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~mg 441 (556)
...++-|.++||+.+++..++..+ -..+..-++||.+.+.
T Consensus 79 e~~v~~L~~MGF~~~~a~~AL~~~-------~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 79 EEIVAIITSMGFQRNQAIQALRAT-------NNNLERALDWIFSHPE 118 (126)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH-------TSCHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHhCCC
Confidence 456888999999999888887643 1256677788876554
No 51
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.30 E-value=36 Score=24.49 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=32.2
Q ss_pred HHHHHHHCCCChHHHHHHHhhccCChhhHHHHHHHHHhCCCCh
Q 008728 114 LIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHVKG 156 (556)
Q Consensus 114 ~~~~L~~~G~s~~~i~~~~~~~~~~~~~l~~~l~~L~~lGls~ 156 (556)
.++-|.+.||+.+.+....+.. +...++..++||.+++.+.
T Consensus 12 mlq~L~eMGFd~erae~Alk~T--g~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 12 MLQELVNAGCDQEMAGRALKQT--GSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH--TSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHh--CcccHHHHHHHHHHhcCCC
Confidence 4678889999999888887754 3345788999999988754
No 52
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.97 E-value=56 Score=23.46 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhh
Q 008728 394 LEVNVKYFLSLGIKLHQLGAMIAD 417 (556)
Q Consensus 394 l~~kv~~L~~lG~~~~ei~~ml~~ 417 (556)
...+|+-|.++||+.+++.+.+..
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~ 32 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVI 32 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHH
Confidence 446688999999999999887653
No 53
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.44 E-value=97 Score=22.73 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHHhC
Q 008728 395 EVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMV 441 (556)
Q Consensus 395 ~~kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~mg 441 (556)
..+++-|.++||+.+++...+..+- ..+..-++||...+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~-------~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATN-------NSLERAVDWIFSHID 49 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCC
Confidence 4567888899999999888877652 147777888887653
No 54
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.04 E-value=43 Score=25.71 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHH
Q 008728 393 KLEVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRR 438 (556)
Q Consensus 393 ~l~~kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~ 438 (556)
..+.+|+-|.+|||+.+++...+..+ -..+..-++||..
T Consensus 28 ~~ee~I~~L~eMGF~r~~a~~AL~~~-------~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 28 ASEEQIQKLVAMGFDRTQVEVALAAA-------DDDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHH-------TSCHHHHHHHHHT
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHh-------CCCHHHHHHHHHH
Confidence 45678899999999999998887754 1256666777765
No 55
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=26.99 E-value=72 Score=24.46 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=9.8
Q ss_pred HHHHHHHhCCCChhHHHHHHH
Q 008728 144 HLAEWLKSVHVKGEFLGVALL 164 (556)
Q Consensus 144 ~~l~~L~~lGls~~~i~~il~ 164 (556)
..+.-|.++||+..++...|.
T Consensus 31 e~I~~L~eMGF~r~~a~~AL~ 51 (73)
T 1vg5_A 31 EQIQKLVAMGFDRTQVEVALA 51 (73)
T ss_dssp HHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 344444445555444444444
No 56
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.76 E-value=53 Score=24.33 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Q 008728 395 EVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRT 439 (556)
Q Consensus 395 ~~kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~ 439 (556)
...|+-|.++||+.+++..++..+= ..+..-++||...
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~-------~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 3567889999999999887776541 2567778888765
No 57
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=25.21 E-value=99 Score=27.10 Aligned_cols=29 Identities=17% Similarity=0.003 Sum_probs=15.1
Q ss_pred cCChhhHHHHHHHHHhCCCChhHHHHHHH
Q 008728 136 GGNLESIRHLAEWLKSVHVKGEFLGVALL 164 (556)
Q Consensus 136 ~~~~~~l~~~l~~L~~lGls~~~i~~il~ 164 (556)
.++++.+.+.+--|.+-|+++++|+-+|.
T Consensus 27 ~~~~eeVe~~I~klakkG~tpSqIG~iLR 55 (151)
T 3u5c_N 27 KLSSESVIEQIVKYARKGLTPSQIGVLLR 55 (151)
T ss_dssp CSCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHhhhHHh
Confidence 34455555555555555555555554444
No 58
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.07 E-value=47 Score=24.61 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=18.9
Q ss_pred HHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHH
Q 008728 145 LAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLE 186 (556)
Q Consensus 145 ~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~ 186 (556)
.++-|.++||+..+..+.|.+ ...++...++||=
T Consensus 22 ~V~~LvsMGFs~~qA~kALKa--------t~~NvErAaDWLF 55 (63)
T 1wgn_A 22 CVETVVNMGYSYECVLRAMKK--------KGENIEQILDYLF 55 (63)
T ss_dssp HHHHHHHHHCCHHHHHHHHHH--------HCSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH--------cCCCHHHHHHHHH
Confidence 355555666666666665554 2234555566553
No 59
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=24.58 E-value=4.2e+02 Score=24.46 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=36.4
Q ss_pred CChhhHHHHHHHC-CCChHHHHHHHhhccCChhhH-----HHHHHHHHhC-CCChhHHHHHHHh
Q 008728 109 SNVVPLIRWLKHN-GLSYPKIAKLICMSGGNLESI-----RHLAEWLKSV-HVKGEFLGVALLK 165 (556)
Q Consensus 109 ~~~~~~~~~L~~~-G~s~~~i~~~~~~~~~~~~~l-----~~~l~~L~~l-Gls~~~i~~il~r 165 (556)
..-..++.+|.+. |+-|....++...+ +++.+ ..-.+.|.+. |+.+....+|+..
T Consensus 81 ~~Er~lf~~L~sv~GIGpk~A~~Ils~~--~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~e 142 (212)
T 2ztd_A 81 GETRDLFLTLLSVSGVGPRLAMAALAVH--DAPALRQVLADGNVAALTRVPGIGKRGAERMVLE 142 (212)
T ss_dssp HHHHHHHHHHHTSTTCCHHHHHHHHHHS--CHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCCcCHHHHHHHHHhC--CHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHH
Confidence 4445677778775 88887777777644 44333 3344667766 8888888877764
No 60
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.61 E-value=55 Score=22.45 Aligned_cols=35 Identities=9% Similarity=0.206 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHH
Q 008728 395 EVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLR 437 (556)
Q Consensus 395 ~~kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~ 437 (556)
..+++-|.++||+.+.+...+..+ . .+..-++||.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~-~-------n~e~A~~~L~ 44 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT-S-------TMEQATEYLL 44 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS-C-------SHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-C-------CHHHHHHHHH
Confidence 456788889999999988887765 1 3555666664
No 61
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=23.37 E-value=4e+02 Score=27.53 Aligned_cols=248 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHhhccccccchhcccccchhHHHHHHHHHHHhccCcccccccccccccccccCCChhhHHHHHHH-
Q 008728 42 IRRQVTAEIFKEAMWRKGKFGITYSTNVADRLPDFIDHVMIKAAALKKLPEFADSSFNVRAKWFIEDSNVVPLIRWLKH- 120 (556)
Q Consensus 42 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~r~~~~l~~~~~~~~~~~L~~- 120 (556)
+||..-|.+.--+|.-...+|+...-.++ +....|-..+.++ ...|...+=-.-.+.+++...+..+++-|.+
T Consensus 286 mrryleqrivecalklqdrygiredvalc--larafDG~~~~I~----~~PY~~~kdVVSDrV~VERKSVsDFInSLiDg 359 (685)
T 4gfj_A 286 MRRYLEQRIVECALKLQDRYGIREDVALC--LARAFDGSISMIA----TTPYRTLKDVCPDLTLEEAKSVNRTLATLIDE 359 (685)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCHHHHHH--HHHHTTTCHHHHH----TSCHHHHHHHCTTCCHHHHHHHCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhhhhccHHHHHHH--HHHHhccchhhee----ccCccchhhhcCcceEEEeCcHHHHHHHhhcC
Q ss_pred CCCChHHHHHHHhhccCCh----hhHHHHHHHHHhCCCChhHHHHH----HHhhCCccccCChhhHHHHHHHHHhCCCCh
Q 008728 121 NGLSYPKIAKLICMSGGNL----ESIRHLAEWLKSVHVKGEFLGVA----LLKTGGNILERSIEELNEIVEYLETNGVRR 192 (556)
Q Consensus 121 ~G~s~~~i~~~~~~~~~~~----~~l~~~l~~L~~lGls~~~i~~i----l~r~~P~lL~~s~~~l~~~l~~L~s~G~~~ 192 (556)
.|=-.+++..+...+..-. +.+.....++..-.+++..|... +.. |..+...=..+-..|...-=..
T Consensus 360 dGRLFdQaerLarhYerPVLLIEGDLeEIe~LYteR~IhPNAIRGAveiqLAS-----LAvkfG~g~eTAe~L~~~agr~ 434 (685)
T 4gfj_A 360 HGLSPDAADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQLAE-----LTKKEGVGRKTAERLLRAFGNP 434 (685)
T ss_dssp TCCCHHHHHHHHHHHSSHHHHHTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHH-----HHTSTTCCHHHHHHHHHHHSSH
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEeccHHhhhhhccCCCCHHHHhhhHhhhhhh-----hhhhcCCchHHHHHHHHHhcch
Q ss_pred hhHHH--------HHhhCCCcccccHHHHHHHHHHHHH-cCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCCh
Q 008728 193 DWMGY--------VMSRCPQLLSQSIEEVKTRVHFYLD-MGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLST 263 (556)
Q Consensus 193 ~~i~~--------lv~~~P~iL~~s~~~l~~~v~fL~~-lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~~ 263 (556)
..+.+ =+..-|.+=......+.+....|.. -|+.+....+++.+|+. +..-+....+-|++-|+..
T Consensus 435 l~leqi~rdrEvgkL~SVpGikek~sktL~eqeamLtAIaGIGp~tAeRLLEkFGS-----Ve~Vm~AteDELRedGIGe 509 (685)
T 4gfj_A 435 ERVKQLAREFEIEKLASVEGVGERVLRSLVPGYASLISIRGIDRERAERLLKKYGG-----YSKVREAGVEELREDGLTD 509 (685)
T ss_dssp HHHHHHHHTTCHHHHHTSTTCCHHHHHHHSTTHHHHHTSTTCCHHHHHHHHHHHTS-----HHHHHHSCHHHHHHTTCCH
T ss_pred hhhhhhhhhhhhhcccccccchhhhhcccccceeeeeccCCCCHHHHHHHHHHhcC-----HHHHHhCCHHHHHHccccH
Q ss_pred HHHHHHHhhC---CcccccCcccchHHH-----------HHHHHHcCCChhhHHHH
Q 008728 264 EDVGRLLAFR---PHLMGCGIGERWKPL-----------VKYLYYLGVSRDGMRRM 305 (556)
Q Consensus 264 ~~I~~ll~~~---P~lL~~s~e~~l~~~-----------v~~L~~lGls~~~i~~i 305 (556)
.++.++..-. ...+.......++.+ ++.|+++|++..+|..+
T Consensus 510 kqarrI~gl~~l~~~~~d~~~a~elkr~ygs~savr~~pv~elrelg~sd~~ia~i 565 (685)
T 4gfj_A 510 AQIRELKGLKTLESIVGDLEKADELKRKYGSASAVRRLPVEELRELGFSDDEIAEI 565 (685)
T ss_dssp HHHHHHHTCHHHHHHSSSHHHHHHHHHHSSCHHHHHHSCHHHHHTTSCCHHHHHHH
T ss_pred HHHHHHhhHHHHHHHhcchhhHHHHHHhhccHHHHHhccHHHHHHcCCchhhHHHh
No 62
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=23.07 E-value=69 Score=24.45 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHHh
Q 008728 395 EVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTM 440 (556)
Q Consensus 395 ~~kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~m 440 (556)
..+|+.|.++||+.+++...++.+= ..+..-++||.+..
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~-------~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHhCC
Confidence 4568889999999999988877542 25667778877643
No 63
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.00 E-value=1.1e+02 Score=24.01 Aligned_cols=41 Identities=20% Similarity=0.110 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCCCC
Q 008728 143 RHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVR 191 (556)
Q Consensus 143 ~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G~~ 191 (556)
.+.+.-|.++||+.....++|.. ...++...++||-+....
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~--------~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKS--------NNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH--------TTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH--------cCCCHHHHHHHHHHCcCC
Confidence 55667777777777776666543 223566667777665443
No 64
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=22.43 E-value=1.4e+02 Score=22.79 Aligned_cols=49 Identities=4% Similarity=0.036 Sum_probs=25.7
Q ss_pred HHHHHHCCCChHHHHHHHhhc---cCChhhH-HHHHHHHHhCCCChhHHHHHH
Q 008728 115 IRWLKHNGLSYPKIAKLICMS---GGNLESI-RHLAEWLKSVHVKGEFLGVAL 163 (556)
Q Consensus 115 ~~~L~~~G~s~~~i~~~~~~~---~~~~~~l-~~~l~~L~~lGls~~~i~~il 163 (556)
++|+.+.|++++...+....| ..+.+.+ +-.-+.|+++|+.--+|.+++
T Consensus 6 f~FFl~aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVm 58 (72)
T 3idw_A 6 FEFFLNCGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVM 58 (72)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHH
Confidence 346677787777766655533 1122211 112346777777655555443
No 65
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.99 E-value=1.3e+02 Score=21.48 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCChhH-HHHHHHhCCcccccchhhhHHHHHHHHHH
Q 008728 215 TRVHFYLDMGMNKND-FGTMVFDYPKILGFLTLEEMHQKVTYLKE 258 (556)
Q Consensus 215 ~~v~fL~~lG~s~~~-l~~ll~~~P~iL~~~~~~~l~~~v~~L~~ 258 (556)
..++-|.++||++.+ ..+.+.. ...++...+++|.+
T Consensus 11 ~~l~~L~~MGF~d~~~n~~AL~~--------~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 11 VQLEQLRSMGFLNREANLQALIA--------TGGDVDAAVEKLRQ 47 (54)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHH--------HTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHH--------cCCCHHHHHHHHHh
Confidence 445556666665543 2343332 23445555555554
No 66
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.71 E-value=1.3e+02 Score=22.96 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHh
Q 008728 144 HLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLET 187 (556)
Q Consensus 144 ~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s 187 (556)
..+.-|.++||+..+..+.|.. ...++...++||-+
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~--------t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 31 SSVDTLLSFGFAEDVARKALKA--------SGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHH--------TTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH--------hCCCHHHHHHHHHh
Confidence 4455566666666666555553 11245555555544
No 67
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=21.43 E-value=1.2e+02 Score=26.05 Aligned_cols=31 Identities=6% Similarity=0.154 Sum_probs=22.4
Q ss_pred ChhhHHHHHHHHHhCCCChhhHHHHHhhCCC
Q 008728 174 SIEELNEIVEYLETNGVRRDWMGYVMSRCPQ 204 (556)
Q Consensus 174 s~~~l~~~l~~L~s~G~~~~~i~~lv~~~P~ 204 (556)
+.+.+...++.|+.+|+.+.++..++.-+|.
T Consensus 73 ~~e~i~~l~~~L~~~~Ltk~E~LqivNl~P~ 103 (136)
T 3ayh_A 73 TKERFLDCIAIFNEFELTKAEILVILNNKPS 103 (136)
T ss_dssp CHHHHHHHHHTTTTTCCCHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHhccCCC
Confidence 4566666777777777777777777777773
No 68
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=21.10 E-value=2.4e+02 Score=28.12 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=23.0
Q ss_pred HHHHHHCCCChHHHHHHHhhccCCh-hhHHHHHHHHHhCCCChhHHHHHHHh
Q 008728 115 IRWLKHNGLSYPKIAKLICMSGGNL-ESIRHLAEWLKSVHVKGEFLGVALLK 165 (556)
Q Consensus 115 ~~~L~~~G~s~~~i~~~~~~~~~~~-~~l~~~l~~L~~lGls~~~i~~il~r 165 (556)
-..+..+|++++++..+....+.++ +.+ -|+.+....++|.+
T Consensus 209 ~~v~~~~gl~~~q~id~~~L~G~D~~~gi---------pGiG~KtA~kll~~ 251 (341)
T 3q8k_A 209 SRILQELGLNQEQFVDLCILLGSDYCESI---------RGIGPKRAVDLIQK 251 (341)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHCCSSSCCC---------TTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHhcCCCCCCCC---------CCccHHHHHHHHHH
Confidence 3455666777777766665544222 111 15556666666664
No 69
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=20.93 E-value=4.1e+02 Score=23.06 Aligned_cols=28 Identities=7% Similarity=0.003 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhCC
Q 008728 211 EEVKTRVHFYLDMGMNKNDFGTMVFDYP 238 (556)
Q Consensus 211 ~~l~~~v~fL~~lG~s~~~l~~ll~~~P 238 (556)
..-...+.||..-|++...|..++...|
T Consensus 133 ~~k~K~~~~L~rrGF~~~~I~~~l~~~~ 160 (162)
T 3dfg_A 133 AQRRKAADLLARRGFDGNSIRLATRFDL 160 (162)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHhcCc
Confidence 3344567899999999999988776543
No 70
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.62 E-value=1.6e+02 Score=22.39 Aligned_cols=41 Identities=7% Similarity=0.036 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHHhC
Q 008728 395 EVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMV 441 (556)
Q Consensus 395 ~~kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~mg 441 (556)
...++-|.++||+.+.+.+.+..+-+ ..++.-++||.+.+.
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n------~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGN------SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCCC
Confidence 35677888999999988887764421 247788899988764
No 71
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.28 E-value=1.3e+02 Score=26.72 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=29.6
Q ss_pred hCCCcccccHHHHHHHHHHHHHcCCChhHHHHHHHhC
Q 008728 201 RCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDY 237 (556)
Q Consensus 201 ~~P~iL~~s~~~l~~~v~fL~~lG~s~~~l~~ll~~~ 237 (556)
..|.-+.++.+++...|.-|.+-|+++.+|+-+++..
T Consensus 21 ~~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~ 57 (158)
T 3j20_Q 21 APPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQ 57 (158)
T ss_dssp SCCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhcc
Confidence 4677778888888888888888888888888777654
Done!