Query 008728
Match_columns 556
No_of_seqs 320 out of 1355
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 10:21:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008728.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008728hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 50.2 6 0.00044 25.3 2.9 26 393-418 3-28 (41)
2 d1qpza1 a.35.1.5 (A:2-58) Puri 48.7 15 0.0011 25.1 5.1 45 222-270 9-53 (57)
3 d2g3qa1 a.5.2.1 (A:1339-1381) 41.6 8 0.00058 24.8 2.4 21 398-418 8-28 (43)
4 d1oqya1 a.5.2.1 (A:160-200) DN 40.9 8 0.00059 24.7 2.4 23 143-165 5-27 (41)
5 d2hsga1 a.35.1.5 (A:2-58) Gluc 40.7 23 0.0017 24.1 5.0 43 222-268 10-52 (57)
6 d2hsga1 a.35.1.5 (A:2-58) Gluc 35.9 30 0.0022 23.5 5.0 46 150-199 9-54 (57)
7 d1efaa1 a.35.1.5 (A:2-60) Lac 35.4 28 0.0021 23.8 4.8 47 150-200 10-56 (59)
8 d2prra1 a.152.1.3 (A:5-194) Un 32.9 51 0.0037 27.4 7.4 52 322-383 138-189 (190)
9 d1efaa1 a.35.1.5 (A:2-60) Lac 31.9 33 0.0024 23.4 4.7 16 223-238 12-27 (59)
10 d1vg5a_ a.5.2.1 (A:) Rhomboid 31.0 23 0.0016 25.4 3.9 38 395-439 30-67 (73)
11 d1rxwa1 a.60.7.1 (A:220-324) F 29.4 59 0.0043 24.5 6.5 9 156-164 26-34 (105)
12 d2prra1 a.152.1.3 (A:5-194) Un 27.7 1.5E+02 0.011 24.2 11.1 41 397-446 140-180 (190)
13 d1qpza1 a.35.1.5 (A:2-58) Puri 27.2 59 0.0043 21.8 5.4 46 150-199 8-53 (57)
14 d1cuka1 a.5.1.1 (A:156-203) DN 26.5 33 0.0024 22.4 3.7 22 144-165 7-28 (48)
15 d1wjia_ a.5.2.1 (A:) Tudor dom 26.5 45 0.0033 22.9 4.7 37 143-187 10-46 (63)
16 d1wgna_ a.5.2.1 (A:) Ubiquitin 26.3 38 0.0028 23.4 4.3 38 395-439 20-57 (63)
17 d1vg5a_ a.5.2.1 (A:) Rhomboid 26.1 33 0.0024 24.4 4.0 22 114-135 32-53 (73)
18 d1wiva_ a.5.2.1 (A:) Ubiquitin 24.0 42 0.003 23.9 4.2 22 144-165 31-52 (73)
19 d1go3f_ a.60.8.2 (F:) RNA poly 23.9 40 0.0029 25.9 4.4 28 176-203 50-77 (107)
20 d2csba4 a.60.2.4 (A:465-519) T 23.6 41 0.003 21.4 3.5 43 118-161 6-50 (55)
21 d1wiva_ a.5.2.1 (A:) Ubiquitin 23.1 33 0.0024 24.5 3.4 38 395-439 30-67 (73)
22 d1sfxa_ a.4.5.50 (A:) Hypothet 22.9 1E+02 0.0075 22.9 6.9 59 111-191 6-64 (109)
23 d1rw1a_ c.47.1.12 (A:) Hypothe 22.4 17 0.0012 28.2 1.8 79 224-307 36-114 (114)
24 d1wgna_ a.5.2.1 (A:) Ubiquitin 20.8 28 0.002 24.1 2.5 37 143-187 20-56 (63)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.21 E-value=6 Score=25.30 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhc
Q 008728 393 KLEVNVKYFLSLGIKLHQLGAMIADF 418 (556)
Q Consensus 393 ~l~~kv~~L~~lG~~~~ei~~ml~~~ 418 (556)
..+.+|+-|.++||+++++...+..+
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45678889999999999988887654
No 2
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=48.75 E-value=15 Score=25.09 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=21.6
Q ss_pred HcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCChHHHHHHH
Q 008728 222 DMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLL 270 (556)
Q Consensus 222 ~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~~~~I~~ll 270 (556)
..|+|...+.+++...|.+ +.++-..+.+...++|..+..+++-+
T Consensus 9 ~agVS~sTVSr~ln~~~~v----s~~tr~rV~~~a~~lgY~pn~~Ar~L 53 (57)
T d1qpza1 9 RANVSTTTVSHVINKTRFV----AEETRNAVWAAIKELHYSPSAVARSL 53 (57)
T ss_dssp HHTSCHHHHHHHHHTCSCC----CHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHCcCHHHHHHHHCCCCcc----CHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 3455555555555555442 23333444444445555555444433
No 3
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=41.55 E-value=8 Score=24.77 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=17.5
Q ss_pred HHHHHHhCCCHHHHHHHHhhc
Q 008728 398 VKYFLSLGIKLHQLGAMIADF 418 (556)
Q Consensus 398 v~~L~~lG~~~~ei~~ml~~~ 418 (556)
|+-|.++||++++..+.+.++
T Consensus 8 i~eL~~MGF~e~~A~~AL~k~ 28 (43)
T d2g3qa1 8 VEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHc
Confidence 667788999999998888766
No 4
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.93 E-value=8 Score=24.67 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=12.1
Q ss_pred HHHHHHHHhCCCChhHHHHHHHh
Q 008728 143 RHLAEWLKSVHVKGEFLGVALLK 165 (556)
Q Consensus 143 ~~~l~~L~~lGls~~~i~~il~r 165 (556)
++.+.-|.++||+..+..+.|.+
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~ 27 (41)
T d1oqya1 5 ETMLTEIMSMGYERERVVAALRA 27 (41)
T ss_dssp HHHHHHHHTTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455555555555555555543
No 5
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=40.68 E-value=23 Score=24.09 Aligned_cols=43 Identities=12% Similarity=0.266 Sum_probs=19.7
Q ss_pred HcCCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCChHHHHH
Q 008728 222 DMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGR 268 (556)
Q Consensus 222 ~lG~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~~~~I~~ 268 (556)
..|+|...+.+++...|.+ +.+.-....+...++|..+...++
T Consensus 10 ~agvS~~TVSr~Ln~~~~V----s~~tr~rV~~aa~~lgY~pn~~A~ 52 (57)
T d2hsga1 10 EASVSMATVSRVVNGNPNV----KPSTRKKVLETIERLGYRPNAVAR 52 (57)
T ss_dssp HTTSCHHHHHHHHTTCTTS----CHHHHHHHHHHHHHHTCCSCHHHH
T ss_pred HHCcCHHHHHHHhCCCCcC----CHHHHHHHHHHHHHHCcCCCHHHH
Confidence 3455555555555554432 223333334444455554444443
No 6
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=35.92 E-value=30 Score=23.47 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=27.1
Q ss_pred HhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCCCChhhHHHHH
Q 008728 150 KSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVM 199 (556)
Q Consensus 150 ~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G~~~~~i~~lv 199 (556)
+..|+|.+.+.++|-. .|. -+.+.-..+.+..+.+|..+...++-+
T Consensus 9 ~~agvS~~TVSr~Ln~-~~~---Vs~~tr~rV~~aa~~lgY~pn~~A~~L 54 (57)
T d2hsga1 9 REASVSMATVSRVVNG-NPN---VKPSTRKKVLETIERLGYRPNAVARGL 54 (57)
T ss_dssp HHTTSCHHHHHHHHTT-CTT---SCHHHHHHHHHHHHHHTCCSCHHHHHH
T ss_pred HHHCcCHHHHHHHhCC-CCc---CCHHHHHHHHHHHHHHCcCCCHHHHHh
Confidence 4467777777766664 443 255555566666666666666555443
No 7
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=35.42 E-value=28 Score=23.79 Aligned_cols=47 Identities=4% Similarity=0.026 Sum_probs=28.7
Q ss_pred HhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCCCChhhHHHHHh
Q 008728 150 KSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMS 200 (556)
Q Consensus 150 ~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G~~~~~i~~lv~ 200 (556)
+..|++.+.+.++|.. .|.+ +.+.-..+.+..+++|..+..++..+.
T Consensus 10 ~~agvS~sTVSr~l~~-~~~v---s~~tr~rI~~~a~~lgY~pn~~Ar~L~ 56 (59)
T d1efaa1 10 EYAGVSYQTVSRVVNQ-ASHV---SAKTREKVEAAMAELNYIPNRVAQQLA 56 (59)
T ss_dssp HTTTSCHHHHHHHHTT-CSSC---CTHHHHHHHHHHHHHTCCCCHHHHHHT
T ss_pred HHHCCCHHHHHHHHCC-CCcC---CHHHHHHHHHHHHHHCCCcCHHHHHHh
Confidence 4567777777766653 4432 455566666666777777666655543
No 8
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=32.94 E-value=51 Score=27.43 Aligned_cols=52 Identities=12% Similarity=0.062 Sum_probs=31.4
Q ss_pred hhHHHHHHHhCCChhhHhhhhhhcCccccchhhhhhHHHHHHHHHHcCCCcchHhHHHhhcc
Q 008728 322 VPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGP 383 (556)
Q Consensus 322 ~~kv~~L~~lG~s~~~i~~~i~~~P~iL~~s~~~~L~~~~~fL~~~lGl~~~~i~~vi~~~P 383 (556)
..-++-|++.|+++++|..++.-.- +-..+..+...+|+++++-...+-+.|
T Consensus 138 d~~~~~L~~~g~s~~eivel~~~va----------~~~~~nr~~~~l~i~~d~e~~~~~~~~ 189 (190)
T d2prra1 138 EADFEALREHGFTDEDAWDIAAITA----------FFGLSNRMANTIGMRPNDEFFLMGRVP 189 (190)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHH----------HHHHHHHHHHHHTCCCCHHHHHTTSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH----------HHHHHHHHHHHhCCCCChHHHhcCCCC
Confidence 3446777788888888877765211 111223344678888777655555555
No 9
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=31.87 E-value=33 Score=23.44 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=7.1
Q ss_pred cCCChhHHHHHHHhCC
Q 008728 223 MGMNKNDFGTMVFDYP 238 (556)
Q Consensus 223 lG~s~~~l~~ll~~~P 238 (556)
.|++...+.+++...|
T Consensus 12 agvS~sTVSr~l~~~~ 27 (59)
T d1efaa1 12 AGVSYQTVSRVVNQAS 27 (59)
T ss_dssp TTSCHHHHHHHHTTCS
T ss_pred HCCCHHHHHHHHCCCC
Confidence 3444444444444433
No 10
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=31.02 E-value=23 Score=25.40 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Q 008728 395 EVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRT 439 (556)
Q Consensus 395 ~~kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~ 439 (556)
+..|+-|.++||+.+++...+..+ -.++..-++||...
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~-------~~n~e~A~~~Ll~~ 67 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAA-------DDDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH-------TSCHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh-------CCCHHHHHHHHHhC
Confidence 456788999999999888777654 23577777777654
No 11
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.40 E-value=59 Score=24.53 Aligned_cols=9 Identities=0% Similarity=-0.540 Sum_probs=3.4
Q ss_pred hhHHHHHHH
Q 008728 156 GEFLGVALL 164 (556)
Q Consensus 156 ~~~i~~il~ 164 (556)
+....++|.
T Consensus 26 ~ktA~kli~ 34 (105)
T d1rxwa1 26 VKKALNYIK 34 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 12
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=27.72 E-value=1.5e+02 Score=24.15 Aligned_cols=41 Identities=12% Similarity=-0.017 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHHhCCChhH
Q 008728 397 NVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQD 446 (556)
Q Consensus 397 kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~ 446 (556)
-++-|++.||+..+|..++... .+-.-+..+.+.+|.++++
T Consensus 140 ~~~~L~~~g~s~~eivel~~~v---------a~~~~~nr~~~~l~i~~d~ 180 (190)
T d2prra1 140 DFEALREHGFTDEDAWDIAAIT---------AFFGLSNRMANTIGMRPND 180 (190)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH---------HHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH---------HHHHHHHHHHHHhCCCCCh
Confidence 3566777888888887765421 1222344455667777654
No 13
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.21 E-value=59 Score=21.84 Aligned_cols=46 Identities=11% Similarity=-0.008 Sum_probs=27.5
Q ss_pred HhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCCCChhhHHHHH
Q 008728 150 KSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVM 199 (556)
Q Consensus 150 ~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G~~~~~i~~lv 199 (556)
+..|+|.+.+.++|-. .|. .+.+.-..+.+..+.+|..+..+++-+
T Consensus 8 ~~agVS~sTVSr~ln~-~~~---vs~~tr~rV~~~a~~lgY~pn~~Ar~L 53 (57)
T d1qpza1 8 KRANVSTTTVSHVINK-TRF---VAEETRNAVWAAIKELHYSPSAVARSL 53 (57)
T ss_dssp HHHTSCHHHHHHHHHT-CSC---CCHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHCcCHHHHHHHHCC-CCc---cCHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 3457777777766664 443 245555666666666666666655544
No 14
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.48 E-value=33 Score=22.37 Aligned_cols=22 Identities=14% Similarity=-0.009 Sum_probs=10.6
Q ss_pred HHHHHHHhCCCChhHHHHHHHh
Q 008728 144 HLAEWLKSVHVKGEFLGVALLK 165 (556)
Q Consensus 144 ~~l~~L~~lGls~~~i~~il~r 165 (556)
+-++.|.++|+++.+..+++.+
T Consensus 7 eAi~AL~~LGY~~~ea~~av~~ 28 (48)
T d1cuka1 7 EAVARLVALGYKPQEASRMVSK 28 (48)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 3444455555555555544443
No 15
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.48 E-value=45 Score=22.88 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHh
Q 008728 143 RHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLET 187 (556)
Q Consensus 143 ~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s 187 (556)
...++-|.++||+.....+.|.. + ..++...++||-+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~-~-------~~~~e~A~~wL~~ 46 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALMD-N-------GNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHH-T-------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH-h-------CCCHHHHHHHHHH
Confidence 34566667777777766666554 1 1256666666654
No 16
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.28 E-value=38 Score=23.38 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Q 008728 395 EVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRT 439 (556)
Q Consensus 395 ~~kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~ 439 (556)
+..|+.|.++||+.+++.+.+..+ -.++..-++||...
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~-------~~n~e~A~~~Lls~ 57 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKK-------GENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH-------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHhC
Confidence 456888889999998888777654 12577777777764
No 17
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=26.14 E-value=33 Score=24.44 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=9.9
Q ss_pred HHHHHHHCCCChHHHHHHHhhc
Q 008728 114 LIRWLKHNGLSYPKIAKLICMS 135 (556)
Q Consensus 114 ~~~~L~~~G~s~~~i~~~~~~~ 135 (556)
.+.-|...||+.++..+.+...
T Consensus 32 ~i~~L~~MGF~~~~a~~AL~~~ 53 (73)
T d1vg5a_ 32 QIQKLVAMGFDRTQVEVALAAA 53 (73)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444444444444444433
No 18
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.98 E-value=42 Score=23.88 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=12.4
Q ss_pred HHHHHHHhCCCChhHHHHHHHh
Q 008728 144 HLAEWLKSVHVKGEFLGVALLK 165 (556)
Q Consensus 144 ~~l~~L~~lGls~~~i~~il~r 165 (556)
..+.-|.++||+..+..+.|..
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~ 52 (73)
T d1wiva_ 31 SSVDTLLSFGFAEDVARKALKA 52 (73)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHH
Confidence 3455555666666665555554
No 19
>d1go3f_ a.60.8.2 (F:) RNA polymerase II subunit RBP4 (RpoF) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=23.87 E-value=40 Score=25.87 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHhCCCChhhHHHHHhhCC
Q 008728 176 EELNEIVEYLETNGVRRDWMGYVMSRCP 203 (556)
Q Consensus 176 ~~l~~~l~~L~s~G~~~~~i~~lv~~~P 203 (556)
++....++-|.++|+.+..++++..-+|
T Consensus 50 e~~~~l~~~L~~~~~~~~~aakIanL~P 77 (107)
T d1go3f_ 50 EEAKKLVEELISLGIDEKTAVKIADILP 77 (107)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 3333444444444444444444444444
No 20
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=23.62 E-value=41 Score=21.41 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=28.9
Q ss_pred HHH-CCCChHHHHHHHhhccCChhhH-HHHHHHHHhCCCChhHHHH
Q 008728 118 LKH-NGLSYPKIAKLICMSGGNLESI-RHLAEWLKSVHVKGEFLGV 161 (556)
Q Consensus 118 L~~-~G~s~~~i~~~~~~~~~~~~~l-~~~l~~L~~lGls~~~i~~ 161 (556)
|.+ .|++++...++.+.+ ..+..+ +.-++-|++-|++.++|..
T Consensus 6 lisirgidreraerllkky-ggyskvreagveelredgltdaqire 50 (55)
T d2csba4 6 LISIRGIDRERAERLLKKY-GGYSKVREAGVEELREDGLTDAQIRE 50 (55)
T ss_dssp HHTSTTCCHHHHHHHHHHH-TSHHHHHTSCHHHHHHTTCCHHHHHH
T ss_pred eeeeecccHHHHHHHHHHh-cChhHHHHhhHHHHHHccccHHHHHH
Confidence 444 389999888888765 233222 2346677888999988874
No 21
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.07 E-value=33 Score=24.49 Aligned_cols=38 Identities=11% Similarity=0.060 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Q 008728 395 EVNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRT 439 (556)
Q Consensus 395 ~~kv~~L~~lG~~~~ei~~ml~~~P~lL~~s~e~l~~k~~fL~~~ 439 (556)
...|+-|.++||+.+++...+..+ -.++..-++||.+.
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~-------~~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKAS-------GGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT-------TSCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHc-------CCCHHHHHHHHHcC
Confidence 456888999999999998887765 22577778887764
No 22
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=22.87 E-value=1e+02 Score=22.93 Aligned_cols=59 Identities=10% Similarity=0.076 Sum_probs=30.4
Q ss_pred hhhHHHHHHHCCCChHHHHHHHhhccCChhhHHHHHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHhCCC
Q 008728 111 VVPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGV 190 (556)
Q Consensus 111 ~~~~~~~L~~~G~s~~~i~~~~~~~~~~~~~l~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s~G~ 190 (556)
+..+...|..+|+++.++.-+.... +.=+.+..+|++. ++.+..++-.+++-|.+.|+
T Consensus 6 ~~~l~~~L~~lGlt~~e~~v~~~L~--------------~~g~~t~~eia~~--------~~i~~~~v~~~l~~L~~~Gl 63 (109)
T d1sfxa_ 6 LGELVKALEKLSFKPSDVRIYSLLL--------------ERGGMRVSEIARE--------LDLSARFVRDRLKVLLKRGF 63 (109)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHH--------------HHCCBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH--------------hcCCCCHHHHHHH--------hCCCcchHHHHHHHHHhCCC
Confidence 3456666777777777644333221 1123344444432 12244455556777777777
Q ss_pred C
Q 008728 191 R 191 (556)
Q Consensus 191 ~ 191 (556)
-
T Consensus 64 V 64 (109)
T d1sfxa_ 64 V 64 (109)
T ss_dssp E
T ss_pred E
Confidence 4
No 23
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.36 E-value=17 Score=28.20 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHhCCcccccchhhhHHHHHHHHHHcCCChHHHHHHHhhCCcccccCcccchHHHHHHHHHcCCChhhHH
Q 008728 224 GMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMR 303 (556)
Q Consensus 224 G~s~~~l~~ll~~~P~iL~~~~~~~l~~~v~~L~~lG~~~~~I~~ll~~~P~lL~~s~e~~l~~~v~~L~~lGls~~~i~ 303 (556)
+++.+++..++...+.--.....+.....+.......++.+++..++..+|.++...+-.+=...+ +|++++.+.
T Consensus 36 pls~~eL~~ll~~~g~~~l~~~r~~~~k~l~~~~~~~ls~~e~i~~i~~~P~LikRPIv~~~~~~~-----iG~~~e~~~ 110 (114)
T d1rw1a_ 36 GIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLDEAKAIELMLAQPSMIKRPVLELGGRTL-----VGFKPDAYA 110 (114)
T ss_dssp CCCHHHHHHHHHHHCHHHHBCTTSHHHHTSCHHHHTTCCHHHHHHHHHHCGGGBCSCEEECSSCEE-----ESCCHHHHH
T ss_pred CCCHHHHHHHHHhcchHHHhhhhhHHHHHhhhhhhccccHHHHHHHHHhCcceEeCCEEEECCEEE-----ECCCHHHHH
Q ss_pred HHHh
Q 008728 304 RMLV 307 (556)
Q Consensus 304 ~il~ 307 (556)
.++.
T Consensus 111 ~~ls 114 (114)
T d1rw1a_ 111 AALA 114 (114)
T ss_dssp HHHC
T ss_pred HHhC
No 24
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.82 E-value=28 Score=24.13 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCChhHHHHHHHhhCCccccCChhhHHHHHHHHHh
Q 008728 143 RHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLET 187 (556)
Q Consensus 143 ~~~l~~L~~lGls~~~i~~il~r~~P~lL~~s~~~l~~~l~~L~s 187 (556)
++.++-|.++||+..+..+.|.. ...++...++||-+
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~--------~~~n~e~A~~~Lls 56 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKK--------KGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHH--------HCSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH--------cCCCHHHHHHHHHh
Confidence 34566666666666666655554 11245555666544
Done!