Query 008730
Match_columns 556
No_of_seqs 581 out of 4737
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 15:51:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 3.5E-84 7.5E-89 585.4 18.5 284 249-539 3-287 (303)
2 cd07417 MPP_PP5_C PP5, C-termi 100.0 1.7E-79 3.6E-84 609.4 30.3 316 234-549 1-316 (316)
3 KOG0376 Serine-threonine phosp 100.0 5E-79 1.1E-83 608.3 25.1 471 13-554 3-475 (476)
4 cd07420 MPP_RdgC Drosophila me 100.0 2.8E-74 6.2E-79 569.6 30.8 289 244-535 2-321 (321)
5 KOG0373 Serine/threonine speci 100.0 9.7E-76 2.1E-80 521.5 17.3 287 248-541 5-293 (306)
6 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 1.9E-71 4.1E-76 545.4 28.5 283 249-538 2-285 (285)
7 cd07416 MPP_PP2B PP2B, metallo 100.0 5.2E-71 1.1E-75 548.2 29.0 288 249-544 3-304 (305)
8 PTZ00480 serine/threonine-prot 100.0 1.1E-70 2.4E-75 543.0 29.9 285 249-540 11-304 (320)
9 PTZ00239 serine/threonine prot 100.0 8.5E-71 1.8E-75 543.1 28.6 285 249-540 3-289 (303)
10 cd07418 MPP_PP7 PP7, metalloph 100.0 2.6E-70 5.7E-75 548.2 31.0 302 244-545 7-375 (377)
11 PTZ00244 serine/threonine-prot 100.0 1.2E-69 2.6E-74 533.5 28.3 269 261-536 24-293 (294)
12 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 2.9E-69 6.3E-74 532.0 28.6 269 261-536 22-291 (293)
13 KOG0374 Serine/threonine speci 100.0 1.4E-69 3.1E-74 536.6 24.7 270 261-537 31-303 (331)
14 KOG0375 Serine-threonine phosp 100.0 2.8E-70 6.1E-75 518.5 14.9 288 249-544 48-349 (517)
15 smart00156 PP2Ac Protein phosp 100.0 1.4E-67 3E-72 516.9 28.3 267 263-536 2-269 (271)
16 cd07419 MPP_Bsu1_C Arabidopsis 100.0 8.5E-65 1.9E-69 506.3 27.3 270 261-536 20-311 (311)
17 KOG0371 Serine/threonine prote 100.0 1.9E-66 4.1E-71 473.2 12.3 287 247-540 18-305 (319)
18 KOG0377 Protein serine/threoni 100.0 6.8E-66 1.5E-70 499.9 15.9 317 226-546 99-441 (631)
19 cd00144 MPP_PPP_family phospho 100.0 8.2E-34 1.8E-38 274.4 20.5 213 296-521 1-224 (225)
20 cd07425 MPP_Shelphs Shewanella 99.9 8.6E-26 1.9E-30 213.9 14.8 176 296-506 1-196 (208)
21 PRK13625 bis(5'-nucleosyl)-tet 99.9 2E-25 4.3E-30 217.2 15.0 122 293-417 1-145 (245)
22 cd07413 MPP_PA3087 Pseudomonas 99.9 1E-23 2.2E-28 202.0 14.7 115 296-413 2-142 (222)
23 PRK00166 apaH diadenosine tetr 99.9 3.2E-23 6.9E-28 203.0 17.3 216 293-523 1-259 (275)
24 cd07422 MPP_ApaH Escherichia c 99.9 4.7E-24 1E-28 206.6 10.6 147 295-447 1-158 (257)
25 cd07423 MPP_PrpE Bacillus subt 99.9 5.3E-23 1.2E-27 199.3 15.8 119 293-414 1-140 (234)
26 TIGR00668 apaH bis(5'-nucleosy 99.9 1.1E-23 2.3E-28 203.6 10.0 127 294-426 2-134 (279)
27 PRK11439 pphA serine/threonine 99.9 5.1E-23 1.1E-27 197.0 12.9 124 285-414 9-146 (218)
28 cd07421 MPP_Rhilphs Rhilph pho 99.9 8.6E-23 1.9E-27 196.9 14.2 197 294-522 3-291 (304)
29 PHA02239 putative protein phos 99.9 2E-22 4.3E-27 193.5 11.8 173 293-507 1-219 (235)
30 cd07424 MPP_PrpA_PrpB PrpA and 99.9 5.7E-22 1.2E-26 188.6 14.6 169 293-492 1-183 (207)
31 PRK09968 serine/threonine-spec 99.8 8.5E-21 1.8E-25 181.3 13.5 125 284-414 6-144 (218)
32 KOG0553 TPR repeat-containing 99.8 2E-17 4.4E-22 157.7 16.4 168 9-200 76-244 (304)
33 PRK15359 type III secretion sy 99.6 1.4E-14 3E-19 129.5 16.6 116 16-131 26-141 (144)
34 KOG4626 O-linked N-acetylgluco 99.6 8.4E-15 1.8E-19 150.2 10.8 127 6-132 244-370 (966)
35 KOG4626 O-linked N-acetylgluco 99.5 4.6E-14 1E-18 144.9 13.5 134 8-141 314-452 (966)
36 PRK15363 pathogenicity island 99.5 8.1E-13 1.7E-17 116.5 16.6 108 11-118 32-139 (157)
37 KOG1126 DNA-binding cell divis 99.5 3.1E-14 6.6E-19 148.3 8.7 134 7-142 414-547 (638)
38 TIGR02552 LcrH_SycD type III s 99.5 1.9E-12 4.1E-17 114.3 16.8 121 7-127 10-130 (135)
39 PLN03088 SGT1, suppressor of 99.5 1.1E-12 2.4E-17 134.9 17.1 117 15-131 3-119 (356)
40 KOG0548 Molecular co-chaperone 99.4 4.6E-12 1E-16 129.3 17.5 120 10-129 354-473 (539)
41 PRK11189 lipoprotein NlpI; Pro 99.4 5.5E-12 1.2E-16 126.9 17.5 108 10-117 60-167 (296)
42 TIGR00990 3a0801s09 mitochondr 99.4 3.4E-12 7.4E-17 141.7 17.0 131 10-142 327-457 (615)
43 PRK10370 formate-dependent nit 99.4 5.8E-12 1.3E-16 118.6 15.7 110 9-118 68-180 (198)
44 COG3063 PilF Tfp pilus assembl 99.4 7E-12 1.5E-16 115.5 15.0 129 12-142 33-163 (250)
45 TIGR00990 3a0801s09 mitochondr 99.4 4.2E-12 9.2E-17 141.0 15.5 132 9-142 360-491 (615)
46 KOG1155 Anaphase-promoting com 99.4 1.7E-12 3.8E-17 129.8 9.8 129 12-142 328-456 (559)
47 KOG1155 Anaphase-promoting com 99.4 7E-12 1.5E-16 125.5 13.7 133 8-142 358-490 (559)
48 KOG1126 DNA-binding cell divis 99.3 7.8E-12 1.7E-16 130.6 13.3 130 9-140 484-613 (638)
49 PRK15359 type III secretion sy 99.3 8.1E-12 1.8E-16 111.6 11.3 104 34-142 13-116 (144)
50 PRK10370 formate-dependent nit 99.3 1.1E-11 2.4E-16 116.8 12.8 114 27-142 52-168 (198)
51 KOG0624 dsRNA-activated protei 99.3 8.9E-11 1.9E-15 113.5 18.6 262 8-289 32-307 (504)
52 PRK12370 invasion protein regu 99.3 2.7E-11 5.8E-16 132.5 16.7 131 9-141 333-464 (553)
53 KOG0543 FKBP-type peptidyl-pro 99.3 4.4E-11 9.5E-16 119.2 16.1 122 11-132 205-341 (397)
54 PRK12370 invasion protein regu 99.3 2.8E-11 6.1E-16 132.3 16.3 133 8-142 289-430 (553)
55 KOG1125 TPR repeat-containing 99.3 1.5E-11 3.2E-16 126.6 12.0 134 7-142 312-522 (579)
56 TIGR02521 type_IV_pilW type IV 99.3 1E-10 2.3E-15 111.9 16.9 134 7-142 24-159 (234)
57 PRK09782 bacteriophage N4 rece 99.3 6.1E-11 1.3E-15 135.5 17.6 127 13-142 575-701 (987)
58 COG3063 PilF Tfp pilus assembl 99.3 5.3E-11 1.2E-15 109.8 12.9 134 7-142 62-197 (250)
59 PRK15179 Vi polysaccharide bio 99.3 4.8E-11 1E-15 131.5 14.1 130 11-142 83-212 (694)
60 COG5010 TadD Flp pilus assembl 99.2 1.9E-10 4.2E-15 108.3 15.5 132 9-140 95-226 (257)
61 PF00149 Metallophos: Calcineu 99.2 1.9E-11 4.1E-16 111.9 8.8 159 294-488 2-199 (200)
62 TIGR02521 type_IV_pilW type IV 99.2 2.6E-10 5.7E-15 109.1 16.8 132 9-142 60-193 (234)
63 TIGR02795 tol_pal_ybgF tol-pal 99.2 2.3E-10 5E-15 98.1 14.6 108 14-121 2-115 (119)
64 PRK15174 Vi polysaccharide exp 99.2 1.4E-10 3.1E-15 129.0 16.8 125 16-142 214-342 (656)
65 KOG4234 TPR repeat-containing 99.2 1.5E-10 3.3E-15 104.1 13.5 116 11-126 92-212 (271)
66 PRK09782 bacteriophage N4 rece 99.2 2.1E-10 4.5E-15 131.3 17.1 128 10-140 606-733 (987)
67 KOG0547 Translocase of outer m 99.2 1.8E-10 4E-15 116.1 14.3 126 15-142 361-486 (606)
68 PF13429 TPR_15: Tetratricopep 99.2 7.1E-11 1.5E-15 118.0 11.3 132 10-143 142-273 (280)
69 KOG1125 TPR repeat-containing 99.2 6E-11 1.3E-15 122.2 10.4 121 12-132 428-558 (579)
70 PRK02603 photosystem I assembl 99.2 4.9E-10 1.1E-14 103.4 15.5 112 4-115 25-153 (172)
71 TIGR03302 OM_YfiO outer membra 99.2 4.2E-10 9E-15 109.3 15.8 112 9-120 28-153 (235)
72 PRK15174 Vi polysaccharide exp 99.2 3.6E-10 7.7E-15 125.9 16.1 131 10-142 242-376 (656)
73 cd00189 TPR Tetratricopeptide 99.2 4.5E-10 9.8E-15 90.5 12.1 99 16-114 2-100 (100)
74 TIGR02552 LcrH_SycD type III s 99.2 1.8E-10 4E-15 101.5 10.2 106 35-142 4-109 (135)
75 PRK15331 chaperone protein Sic 99.2 1.2E-09 2.5E-14 97.0 15.0 115 8-123 31-145 (165)
76 KOG0548 Molecular co-chaperone 99.2 2.4E-10 5.2E-15 116.9 11.9 113 14-126 2-114 (539)
77 PF13414 TPR_11: TPR repeat; P 99.1 1.9E-10 4.1E-15 88.8 8.5 66 48-113 3-69 (69)
78 PF13414 TPR_11: TPR repeat; P 99.1 1.8E-10 3.9E-15 88.9 8.1 67 13-79 2-69 (69)
79 KOG4648 Uncharacterized conser 99.1 2.8E-10 6.1E-15 110.0 11.1 114 14-127 97-210 (536)
80 KOG0547 Translocase of outer m 99.1 5E-10 1.1E-14 113.1 13.0 135 7-142 387-527 (606)
81 PLN02789 farnesyltranstransfer 99.1 2.5E-09 5.3E-14 107.9 17.1 121 9-129 66-189 (320)
82 TIGR03302 OM_YfiO outer membra 99.1 1.5E-09 3.3E-14 105.4 14.9 130 11-142 67-227 (235)
83 KOG0550 Molecular chaperone (D 99.1 1.2E-09 2.7E-14 108.3 13.9 130 10-140 245-381 (486)
84 PRK11189 lipoprotein NlpI; Pro 99.1 1.3E-09 2.9E-14 109.6 14.0 115 26-142 38-156 (296)
85 PRK15363 pathogenicity island 99.1 2E-09 4.4E-14 95.0 12.7 100 40-141 26-126 (157)
86 cd00841 MPP_YfcE Escherichia c 99.1 2.9E-09 6.4E-14 96.4 14.3 82 294-413 1-85 (155)
87 PRK10049 pgaA outer membrane p 99.1 2.4E-09 5.1E-14 121.7 16.6 130 10-142 45-174 (765)
88 PRK11788 tetratricopeptide rep 99.1 4.8E-09 1.1E-13 109.8 17.4 121 11-131 138-264 (389)
89 CHL00033 ycf3 photosystem I as 99.1 6E-09 1.3E-13 95.7 15.9 109 8-116 29-154 (168)
90 COG4235 Cytochrome c biogenesi 99.0 4.7E-09 1E-13 101.5 14.8 117 8-124 150-269 (287)
91 PRK11447 cellulose synthase su 99.0 4.8E-09 1E-13 124.5 18.0 122 19-142 274-409 (1157)
92 PF12895 Apc3: Anaphase-promot 99.0 6.4E-10 1.4E-14 89.5 7.3 82 26-108 1-84 (84)
93 PRK11447 cellulose synthase su 99.0 6.8E-09 1.5E-13 123.2 19.0 124 17-142 354-519 (1157)
94 PF12850 Metallophos_2: Calcin 99.0 2.8E-09 6E-14 96.4 12.2 152 293-523 1-152 (156)
95 TIGR00040 yfcE phosphoesterase 99.0 8.5E-09 1.8E-13 93.7 14.8 64 293-365 1-64 (158)
96 PLN02789 farnesyltranstransfer 99.0 5.3E-09 1.2E-13 105.5 14.7 129 12-142 35-166 (320)
97 TIGR02917 PEP_TPR_lipo putativ 99.0 3.3E-09 7.1E-14 122.3 14.8 115 16-131 738-852 (899)
98 KOG0553 TPR repeat-containing 99.0 1.7E-09 3.8E-14 103.8 10.0 92 49-142 82-173 (304)
99 COG4783 Putative Zn-dependent 99.0 9.9E-09 2.1E-13 104.5 15.3 122 11-132 303-424 (484)
100 PRK11788 tetratricopeptide rep 99.0 7.9E-09 1.7E-13 108.2 15.4 126 15-142 108-238 (389)
101 PF08321 PPP5: PPP5 TPR repeat 99.0 8.8E-10 1.9E-14 89.3 6.2 60 228-287 36-95 (95)
102 KOG2076 RNA polymerase III tra 99.0 1.6E-08 3.4E-13 109.3 17.4 126 12-139 137-262 (895)
103 COG5010 TadD Flp pilus assembl 99.0 9.9E-09 2.2E-13 96.9 13.6 129 10-141 63-191 (257)
104 PRK10803 tol-pal system protei 99.0 1.9E-08 4.2E-13 98.5 16.3 109 14-122 142-257 (263)
105 PF13432 TPR_16: Tetratricopep 99.0 2.2E-09 4.7E-14 81.8 7.6 63 19-81 2-64 (65)
106 TIGR02917 PEP_TPR_lipo putativ 99.0 1.2E-08 2.7E-13 117.5 17.5 131 9-141 120-250 (899)
107 PRK15179 Vi polysaccharide bio 99.0 9.2E-09 2E-13 113.6 15.2 112 7-118 113-224 (694)
108 PF13432 TPR_16: Tetratricopep 98.9 2.5E-09 5.5E-14 81.4 7.3 65 52-116 1-65 (65)
109 PRK09453 phosphodiesterase; Pr 98.9 2.5E-09 5.4E-14 99.6 7.9 69 293-366 1-77 (182)
110 COG0639 ApaH Diadenosine tetra 98.9 1.8E-09 3.9E-14 96.7 6.4 142 367-510 3-154 (155)
111 KOG0550 Molecular chaperone (D 98.9 2.3E-09 5E-14 106.4 7.4 134 8-143 197-346 (486)
112 KOG2003 TPR repeat-containing 98.9 1.3E-08 2.7E-13 101.9 11.0 123 9-131 485-607 (840)
113 COG2956 Predicted N-acetylgluc 98.9 5E-08 1.1E-12 94.3 14.5 121 12-132 139-265 (389)
114 PRK14574 hmsH outer membrane p 98.9 5.7E-08 1.2E-12 109.4 17.3 133 9-143 29-161 (822)
115 PF13429 TPR_15: Tetratricopep 98.9 5.6E-09 1.2E-13 104.3 8.2 129 12-142 108-238 (280)
116 cd07397 MPP_DevT Myxococcus xa 98.9 2.6E-08 5.6E-13 95.1 12.2 109 294-413 2-157 (238)
117 cd07379 MPP_239FB Homo sapiens 98.9 1.8E-08 4E-13 88.9 10.4 118 294-493 1-120 (135)
118 KOG0545 Aryl-hydrocarbon recep 98.9 5.3E-08 1.1E-12 90.5 13.6 110 10-119 174-301 (329)
119 KOG4162 Predicted calmodulin-b 98.8 2.1E-08 4.6E-13 106.6 11.7 120 14-133 650-771 (799)
120 KOG4555 TPR repeat-containing 98.8 2.1E-07 4.6E-12 78.3 15.3 103 14-116 43-149 (175)
121 KOG1173 Anaphase-promoting com 98.8 2.5E-08 5.5E-13 102.7 11.8 119 9-127 409-534 (611)
122 PRK10049 pgaA outer membrane p 98.8 6.3E-08 1.4E-12 110.1 16.3 131 9-142 10-140 (765)
123 PRK14720 transcript cleavage f 98.8 3.3E-08 7.1E-13 110.2 13.2 138 1-143 18-174 (906)
124 KOG3060 Uncharacterized conser 98.8 1.6E-07 3.4E-12 88.1 15.1 122 11-132 83-204 (289)
125 COG4235 Cytochrome c biogenesi 98.8 1E-07 2.2E-12 92.4 14.0 112 29-142 137-251 (287)
126 KOG2076 RNA polymerase III tra 98.8 3.5E-07 7.7E-12 99.1 19.1 109 5-113 164-272 (895)
127 COG1729 Uncharacterized protei 98.8 2.3E-07 5.1E-12 88.8 15.1 110 14-123 141-256 (262)
128 PF13512 TPR_18: Tetratricopep 98.7 5.1E-07 1.1E-11 78.6 15.3 108 13-120 9-137 (142)
129 PLN03088 SGT1, suppressor of 98.7 7.5E-08 1.6E-12 99.3 11.5 90 51-142 5-94 (356)
130 KOG4642 Chaperone-dependent E3 98.7 3.6E-08 7.8E-13 91.4 8.1 101 12-112 8-108 (284)
131 KOG1128 Uncharacterized conser 98.7 2.5E-08 5.4E-13 105.6 7.9 127 14-142 485-611 (777)
132 KOG1173 Anaphase-promoting com 98.7 4.1E-08 8.9E-13 101.2 9.1 135 8-144 306-440 (611)
133 COG4783 Putative Zn-dependent 98.7 3.4E-07 7.3E-12 93.5 15.4 122 9-130 335-456 (484)
134 PF12688 TPR_5: Tetratrico pep 98.7 3.3E-07 7.1E-12 78.4 13.1 96 15-110 2-103 (120)
135 PF13371 TPR_9: Tetratricopept 98.7 8E-08 1.7E-12 74.8 8.7 65 56-120 3-67 (73)
136 PF13371 TPR_9: Tetratricopept 98.7 9.1E-08 2E-12 74.5 8.8 70 21-90 2-71 (73)
137 PRK10866 outer membrane biogen 98.7 9E-07 1.9E-11 86.1 17.3 126 12-137 30-182 (243)
138 PF14559 TPR_19: Tetratricopep 98.7 5.2E-08 1.1E-12 74.7 6.9 64 60-123 3-66 (68)
139 PF14559 TPR_19: Tetratricopep 98.7 5E-08 1.1E-12 74.8 6.7 68 24-91 1-68 (68)
140 KOG1840 Kinesin light chain [C 98.7 2.2E-07 4.7E-12 98.3 13.7 135 6-142 191-349 (508)
141 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 2.7E-07 5.8E-12 94.5 13.3 72 6-77 67-141 (453)
142 PRK10153 DNA-binding transcrip 98.7 4.5E-07 9.7E-12 97.5 15.7 127 13-142 338-477 (517)
143 KOG2002 TPR-containing nuclear 98.7 2.3E-07 4.9E-12 101.2 13.3 120 10-129 303-427 (1018)
144 COG2956 Predicted N-acetylgluc 98.7 6.2E-07 1.3E-11 86.9 14.7 113 6-118 172-285 (389)
145 KOG4162 Predicted calmodulin-b 98.7 4.8E-07 1E-11 96.6 15.0 108 9-116 679-788 (799)
146 KOG3060 Uncharacterized conser 98.7 9.2E-07 2E-11 83.1 15.1 124 8-131 114-240 (289)
147 cd07388 MPP_Tt1561 Thermus the 98.6 6.9E-07 1.5E-11 85.2 14.7 71 293-365 5-75 (224)
148 PF13525 YfiO: Outer membrane 98.6 1.6E-06 3.6E-11 82.1 17.0 126 12-137 3-148 (203)
149 PF09976 TPR_21: Tetratricopep 98.6 4.4E-07 9.5E-12 81.1 12.1 128 12-142 9-142 (145)
150 cd00189 TPR Tetratricopeptide 98.6 4.6E-07 9.9E-12 72.6 11.2 90 50-141 2-91 (100)
151 KOG1174 Anaphase-promoting com 98.6 2.5E-07 5.4E-12 92.1 11.1 112 12-123 298-409 (564)
152 PF06552 TOM20_plant: Plant sp 98.6 5.6E-07 1.2E-11 80.7 12.3 97 30-126 7-124 (186)
153 CHL00033 ycf3 photosystem I as 98.6 3.6E-07 7.8E-12 83.9 11.6 108 24-131 9-121 (168)
154 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.6E-07 3.6E-12 96.1 10.0 70 43-112 70-142 (453)
155 KOG0551 Hsp90 co-chaperone CNS 98.6 3.7E-07 8E-12 88.7 11.7 110 10-119 77-190 (390)
156 PF09976 TPR_21: Tetratricopep 98.6 1.1E-06 2.5E-11 78.4 14.2 98 11-109 45-145 (145)
157 cd07394 MPP_Vps29 Homo sapiens 98.6 1.5E-06 3.3E-11 80.3 15.2 109 294-489 1-118 (178)
158 KOG1156 N-terminal acetyltrans 98.6 4.6E-07 9.9E-12 95.0 12.4 119 14-132 7-125 (700)
159 PRK14574 hmsH outer membrane p 98.6 9E-07 2E-11 99.8 15.1 119 12-131 100-218 (822)
160 TIGR02795 tol_pal_ybgF tol-pal 98.6 4.3E-07 9.4E-12 77.6 9.8 93 48-142 2-100 (119)
161 KOG1129 TPR repeat-containing 98.6 4.8E-07 1E-11 87.6 10.6 131 12-142 254-389 (478)
162 cd05804 StaR_like StaR_like; a 98.5 8.4E-07 1.8E-11 91.6 13.3 129 12-143 41-173 (355)
163 KOG2002 TPR-containing nuclear 98.5 6.3E-07 1.4E-11 97.8 12.5 135 8-142 264-404 (1018)
164 KOG1127 TPR repeat-containing 98.5 2.6E-07 5.5E-12 100.7 9.5 132 9-142 487-654 (1238)
165 COG4785 NlpI Lipoprotein NlpI, 98.5 5.9E-07 1.3E-11 82.3 10.4 115 9-123 60-174 (297)
166 KOG0624 dsRNA-activated protei 98.5 2.6E-06 5.7E-11 83.0 15.4 110 16-125 157-266 (504)
167 PRK11906 transcriptional regul 98.5 1.6E-06 3.5E-11 89.0 14.4 111 8-118 289-408 (458)
168 cd00838 MPP_superfamily metall 98.5 6.9E-07 1.5E-11 77.3 10.4 118 296-494 1-120 (131)
169 cd05804 StaR_like StaR_like; a 98.5 1.1E-06 2.4E-11 90.8 13.3 103 11-113 111-217 (355)
170 TIGR00540 hemY_coli hemY prote 98.5 3E-06 6.4E-11 89.4 16.7 129 12-142 82-211 (409)
171 KOG0543 FKBP-type peptidyl-pro 98.5 1E-06 2.2E-11 88.5 12.1 100 14-113 257-357 (397)
172 TIGR00540 hemY_coli hemY prote 98.5 1.3E-06 2.8E-11 92.2 13.1 128 12-142 261-394 (409)
173 PRK02603 photosystem I assembl 98.5 2.2E-06 4.8E-11 79.0 12.9 87 45-131 32-121 (172)
174 KOG1129 TPR repeat-containing 98.5 2.5E-07 5.4E-12 89.5 6.5 124 8-131 284-444 (478)
175 PRK11906 transcriptional regul 98.5 1.4E-06 3E-11 89.5 12.2 125 16-142 257-396 (458)
176 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 3.5E-06 7.5E-11 86.9 15.3 116 22-142 177-292 (395)
177 KOG1174 Anaphase-promoting com 98.5 1.5E-06 3.2E-11 86.7 11.9 130 9-140 227-390 (564)
178 KOG1840 Kinesin light chain [C 98.5 2.6E-06 5.7E-11 90.2 14.6 133 8-142 319-474 (508)
179 PRK05340 UDP-2,3-diacylglucosa 98.5 3.5E-07 7.6E-12 89.2 7.4 210 293-534 1-238 (241)
180 PF13424 TPR_12: Tetratricopep 98.4 6.2E-07 1.3E-11 70.8 7.0 67 11-77 2-75 (78)
181 KOG1156 N-terminal acetyltrans 98.4 1.3E-06 2.9E-11 91.6 11.2 130 9-140 36-165 (700)
182 PF12895 Apc3: Anaphase-promot 98.4 3.5E-07 7.6E-12 73.5 5.5 79 61-142 2-82 (84)
183 PRK10153 DNA-binding transcrip 98.4 2.8E-06 6.1E-11 91.4 13.0 110 8-118 370-489 (517)
184 PRK10747 putative protoheme IX 98.4 4.5E-06 9.7E-11 87.7 14.1 128 9-142 258-385 (398)
185 PRK15331 chaperone protein Sic 98.4 2.9E-06 6.2E-11 75.6 10.4 99 42-142 31-129 (165)
186 PRK10747 putative protoheme IX 98.4 9.4E-06 2E-10 85.3 16.3 128 12-142 82-211 (398)
187 KOG2003 TPR repeat-containing 98.4 2.7E-06 5.9E-11 85.5 11.1 116 8-123 518-633 (840)
188 COG4700 Uncharacterized protei 98.3 1.8E-05 4E-10 71.0 14.6 119 13-132 88-209 (251)
189 KOG1128 Uncharacterized conser 98.3 1.5E-06 3.3E-11 92.3 9.1 127 14-141 424-583 (777)
190 KOG2376 Signal recognition par 98.3 1.6E-06 3.4E-11 90.2 8.9 126 13-144 11-136 (652)
191 cd07404 MPP_MS158 Microscilla 98.3 4.6E-06 1E-10 76.3 11.2 68 295-365 1-68 (166)
192 PF13424 TPR_12: Tetratricopep 98.3 6.4E-07 1.4E-11 70.7 4.7 67 45-111 2-75 (78)
193 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 5.4E-06 1.2E-10 85.6 12.0 95 15-109 201-295 (395)
194 cd07392 MPP_PAE1087 Pyrobaculu 98.3 1.8E-05 3.9E-10 73.7 14.2 65 295-366 1-66 (188)
195 cd07403 MPP_TTHA0053 Thermus t 98.2 1.1E-05 2.3E-10 70.6 10.9 107 296-493 1-107 (129)
196 KOG0495 HAT repeat protein [RN 98.2 2.7E-05 5.8E-10 82.0 15.3 120 14-133 651-770 (913)
197 TIGR01854 lipid_A_lpxH UDP-2,3 98.2 7E-06 1.5E-10 79.5 10.5 201 295-522 1-226 (231)
198 PF12688 TPR_5: Tetratrico pep 98.2 1.4E-05 3.1E-10 68.3 11.1 91 49-141 2-98 (120)
199 KOG1127 TPR repeat-containing 98.2 4.2E-06 9.1E-11 91.6 9.2 117 14-130 562-678 (1238)
200 cd07399 MPP_YvnB Bacillus subt 98.2 5.5E-05 1.2E-09 72.3 16.1 194 294-536 2-213 (214)
201 PRK14720 transcript cleavage f 98.2 1.9E-05 4.2E-10 88.5 14.6 116 12-128 114-269 (906)
202 COG0622 Predicted phosphoester 98.2 4.3E-05 9.4E-10 69.7 13.9 160 293-537 2-166 (172)
203 KOG1308 Hsp70-interacting prot 98.2 1E-06 2.3E-11 86.1 3.0 104 11-114 111-214 (377)
204 PRK10803 tol-pal system protei 98.2 1.3E-05 2.8E-10 78.6 10.6 93 48-142 142-241 (263)
205 cd07400 MPP_YydB Bacillus subt 98.1 3E-05 6.5E-10 69.0 12.0 118 295-494 1-130 (144)
206 PF12569 NARP1: NMDA receptor- 98.1 0.00015 3.3E-09 77.8 18.2 184 14-207 194-390 (517)
207 PF13525 YfiO: Outer membrane 98.1 0.0002 4.4E-09 67.7 17.3 124 10-133 38-195 (203)
208 KOG0495 HAT repeat protein [RN 98.0 5.7E-05 1.2E-09 79.6 13.0 121 11-131 581-734 (913)
209 PRK10866 outer membrane biogen 98.0 0.00036 7.8E-09 67.9 17.9 122 11-132 66-228 (243)
210 PF12569 NARP1: NMDA receptor- 98.0 0.00015 3.3E-09 77.7 16.3 50 83-132 195-244 (517)
211 KOG4648 Uncharacterized conser 98.0 9.3E-06 2E-10 79.2 5.5 82 51-132 100-181 (536)
212 PF13428 TPR_14: Tetratricopep 98.0 1.6E-05 3.5E-10 55.1 5.1 38 51-88 4-41 (44)
213 COG4785 NlpI Lipoprotein NlpI, 98.0 5.7E-05 1.2E-09 69.5 9.8 74 9-82 94-167 (297)
214 PF13428 TPR_14: Tetratricopep 97.9 2.3E-05 5E-10 54.3 5.6 43 82-124 1-43 (44)
215 PRK11340 phosphodiesterase Yae 97.9 1.8E-05 3.9E-10 78.5 6.8 71 292-365 49-125 (271)
216 cd07395 MPP_CSTP1 Homo sapiens 97.9 0.00046 1E-08 68.1 16.4 70 294-365 6-99 (262)
217 KOG3785 Uncharacterized conser 97.9 0.00026 5.7E-09 69.6 14.1 116 17-132 60-201 (557)
218 cd07383 MPP_Dcr2 Saccharomyces 97.9 0.00023 5E-09 67.2 13.4 70 293-363 3-87 (199)
219 PF13431 TPR_17: Tetratricopep 97.9 1.3E-05 2.7E-10 52.1 3.3 32 71-102 2-33 (34)
220 KOG0376 Serine-threonine phosp 97.9 8.8E-07 1.9E-11 90.5 -3.7 245 262-511 15-299 (476)
221 PF13431 TPR_17: Tetratricopep 97.8 1.6E-05 3.6E-10 51.6 3.2 34 36-69 1-34 (34)
222 KOG4234 TPR repeat-containing 97.8 0.00012 2.7E-09 66.5 9.8 74 11-84 131-204 (271)
223 cd07385 MPP_YkuE_C Bacillus su 97.8 2.7E-05 5.8E-10 74.9 6.0 71 293-366 2-77 (223)
224 PF06552 TOM20_plant: Plant sp 97.8 0.00015 3.3E-09 65.3 10.1 75 9-83 20-115 (186)
225 PF04733 Coatomer_E: Coatomer 97.8 0.00013 2.8E-09 72.9 10.8 120 13-132 130-251 (290)
226 KOG4340 Uncharacterized conser 97.8 0.00011 2.4E-09 70.7 9.6 132 8-141 38-201 (459)
227 COG1729 Uncharacterized protei 97.8 0.00025 5.4E-09 68.3 11.7 82 51-132 144-231 (262)
228 KOG4555 TPR repeat-containing 97.8 0.0001 2.2E-09 62.4 7.9 82 51-132 46-131 (175)
229 PRK04036 DNA polymerase II sma 97.8 0.0005 1.1E-08 74.1 15.1 74 292-367 243-345 (504)
230 PF14938 SNAP: Soluble NSF att 97.8 8E-05 1.7E-09 74.4 8.4 128 12-142 33-179 (282)
231 PF06874 FBPase_2: Firmicute f 97.7 0.00028 6.2E-09 74.9 12.0 52 307-367 175-226 (640)
232 PF00515 TPR_1: Tetratricopept 97.7 6.4E-05 1.4E-09 48.8 4.5 29 51-79 4-32 (34)
233 PF00515 TPR_1: Tetratricopept 97.7 6.9E-05 1.5E-09 48.6 4.4 34 82-115 1-34 (34)
234 PF03704 BTAD: Bacterial trans 97.7 0.0013 2.8E-08 58.6 14.0 99 13-111 5-125 (146)
235 KOG3785 Uncharacterized conser 97.7 0.00043 9.3E-09 68.2 11.3 106 22-131 30-136 (557)
236 KOG1130 Predicted G-alpha GTPa 97.7 7E-05 1.5E-09 74.9 5.9 126 14-141 195-338 (639)
237 PF07719 TPR_2: Tetratricopept 97.6 0.00013 2.8E-09 47.2 5.1 32 83-114 2-33 (34)
238 COG4105 ComL DNA uptake lipopr 97.6 0.0035 7.6E-08 59.9 16.7 106 13-118 33-152 (254)
239 PF14938 SNAP: Soluble NSF att 97.6 0.00048 1.1E-08 68.8 11.7 106 11-116 111-230 (282)
240 PF04733 Coatomer_E: Coatomer 97.6 0.00032 7E-09 70.1 10.3 101 21-121 172-275 (290)
241 KOG4642 Chaperone-dependent E3 97.6 8.3E-05 1.8E-09 69.5 5.3 88 53-142 15-102 (284)
242 TIGR03729 acc_ester putative p 97.6 9.2E-05 2E-09 72.1 5.8 68 294-365 1-74 (239)
243 PF07719 TPR_2: Tetratricopept 97.6 0.00017 3.7E-09 46.5 5.1 32 49-80 2-33 (34)
244 cd07391 MPP_PF1019 Pyrococcus 97.5 0.0002 4.3E-09 65.9 6.8 45 321-366 42-89 (172)
245 PF13512 TPR_18: Tetratricopep 97.5 0.0018 4E-08 56.6 12.1 85 47-131 9-99 (142)
246 TIGR00619 sbcd exonuclease Sbc 97.5 0.0002 4.3E-09 70.2 6.1 73 293-366 1-89 (253)
247 COG0457 NrfG FOG: TPR repeat [ 97.5 0.0043 9.3E-08 57.6 15.1 120 11-130 92-216 (291)
248 COG3071 HemY Uncharacterized e 97.5 0.0045 9.9E-08 62.3 15.4 129 12-142 82-211 (400)
249 KOG2376 Signal recognition par 97.4 0.0016 3.5E-08 68.4 12.6 119 18-141 83-247 (652)
250 cd07396 MPP_Nbla03831 Homo sap 97.4 0.00021 4.6E-09 70.7 6.2 73 294-367 2-88 (267)
251 COG3118 Thioredoxin domain-con 97.4 0.0047 1E-07 60.1 14.6 117 15-131 135-287 (304)
252 cd00844 MPP_Dbr1_N Dbr1 RNA la 97.4 0.00025 5.4E-09 69.5 6.0 70 295-365 1-86 (262)
253 KOG2053 Mitochondrial inherita 97.4 0.0018 4E-08 70.9 12.8 119 23-142 18-138 (932)
254 KOG1130 Predicted G-alpha GTPa 97.4 0.0009 1.9E-08 67.2 9.2 118 14-131 235-370 (639)
255 KOG2796 Uncharacterized conser 97.4 0.0017 3.7E-08 61.8 10.5 105 11-115 209-319 (366)
256 COG3071 HemY Uncharacterized e 97.3 0.0053 1.1E-07 61.8 14.1 116 13-132 262-377 (400)
257 PRK11148 cyclic 3',5'-adenosin 97.3 0.0004 8.7E-09 69.1 6.3 72 292-365 14-98 (275)
258 COG1409 Icc Predicted phosphoh 97.3 0.0028 6E-08 63.4 12.2 73 294-368 2-81 (301)
259 PHA02546 47 endonuclease subun 97.3 0.00033 7.1E-09 71.8 5.5 73 293-366 1-90 (340)
260 cd00840 MPP_Mre11_N Mre11 nucl 97.3 0.00029 6.2E-09 67.6 4.7 73 294-368 1-92 (223)
261 COG4700 Uncharacterized protei 97.3 0.0082 1.8E-07 54.4 13.4 112 20-132 62-176 (251)
262 cd07390 MPP_AQ1575 Aquifex aeo 97.2 0.00052 1.1E-08 62.9 5.9 68 295-367 1-84 (168)
263 PLN03218 maturation of RBCL 1; 97.2 0.0061 1.3E-07 71.3 15.6 123 16-141 581-707 (1060)
264 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0034 7.4E-08 61.7 11.1 93 48-142 81-177 (390)
265 cd07402 MPP_GpdQ Enterobacter 97.2 0.00072 1.6E-08 65.7 6.4 68 294-365 1-83 (240)
266 KOG2796 Uncharacterized conser 97.2 0.011 2.4E-07 56.4 13.6 125 16-142 179-310 (366)
267 COG2908 Uncharacterized protei 97.2 0.0017 3.6E-08 61.4 8.2 196 297-526 2-228 (237)
268 KOG1941 Acetylcholine receptor 97.2 0.0023 5.1E-08 63.4 9.5 118 15-132 123-262 (518)
269 KOG1310 WD40 repeat protein [G 97.1 0.0015 3.3E-08 67.5 8.3 107 10-116 370-479 (758)
270 PF12968 DUF3856: Domain of Un 97.1 0.018 3.9E-07 48.1 12.8 98 14-111 7-129 (144)
271 PLN03218 maturation of RBCL 1; 97.1 0.01 2.2E-07 69.4 15.6 126 14-142 507-638 (1060)
272 PF05843 Suf: Suppressor of fo 97.1 0.007 1.5E-07 60.3 12.5 117 16-132 3-123 (280)
273 KOG0545 Aryl-hydrocarbon recep 97.1 0.012 2.5E-07 55.6 12.8 84 48-131 178-279 (329)
274 PLN03081 pentatricopeptide (PP 97.1 0.0029 6.2E-08 71.7 10.9 121 15-141 260-383 (697)
275 cd08165 MPP_MPPE1 human MPPE1 97.1 0.00082 1.8E-08 60.7 5.0 46 321-366 39-90 (156)
276 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0038 8.3E-08 44.8 7.4 48 83-130 2-49 (53)
277 PF13181 TPR_8: Tetratricopept 97.0 0.0013 2.7E-08 42.5 4.3 29 85-113 4-32 (34)
278 PF13181 TPR_8: Tetratricopept 97.0 0.0014 3E-08 42.3 4.3 33 49-81 2-34 (34)
279 PLN03077 Protein ECB2; Provisi 97.0 0.023 4.9E-07 66.1 17.3 119 17-142 527-649 (857)
280 COG0457 NrfG FOG: TPR repeat [ 97.0 0.031 6.7E-07 51.7 15.4 100 14-113 59-161 (291)
281 PRK10966 exonuclease subunit S 97.0 0.0012 2.5E-08 69.3 5.9 72 293-366 1-88 (407)
282 KOG2471 TPR repeat-containing 97.0 0.0027 6E-08 65.2 8.1 120 12-131 238-384 (696)
283 PRK10941 hypothetical protein; 96.9 0.011 2.4E-07 58.0 11.9 78 49-126 182-259 (269)
284 PLN03081 pentatricopeptide (PP 96.9 0.007 1.5E-07 68.6 11.9 93 14-106 391-486 (697)
285 cd07393 MPP_DR1119 Deinococcus 96.9 0.002 4.3E-08 62.4 6.4 66 295-364 1-83 (232)
286 PF04184 ST7: ST7 protein; In 96.9 0.017 3.7E-07 60.1 13.0 119 19-141 173-318 (539)
287 COG1407 Predicted ICC-like pho 96.8 0.0032 7E-08 59.7 7.1 98 293-413 20-138 (235)
288 TIGR00024 SbcD_rel_arch putati 96.8 0.002 4.2E-08 61.9 5.8 68 294-366 16-103 (225)
289 PF04781 DUF627: Protein of un 96.8 0.01 2.2E-07 49.3 9.1 92 20-111 2-107 (111)
290 COG2976 Uncharacterized protei 96.8 0.029 6.2E-07 51.4 12.6 103 12-115 87-192 (207)
291 KOG1585 Protein required for f 96.8 0.063 1.4E-06 50.9 15.1 101 14-114 31-142 (308)
292 KOG3081 Vesicle coat complex C 96.8 0.035 7.6E-07 53.2 13.5 84 48-131 169-256 (299)
293 KOG4507 Uncharacterized conser 96.8 0.0045 9.8E-08 64.9 8.2 107 21-127 614-721 (886)
294 KOG3824 Huntingtin interacting 96.8 0.0054 1.2E-07 59.6 8.2 68 58-125 126-193 (472)
295 PRK10941 hypothetical protein; 96.7 0.02 4.3E-07 56.3 11.7 79 14-92 181-259 (269)
296 cd08163 MPP_Cdc1 Saccharomyces 96.7 0.069 1.5E-06 52.4 15.6 162 321-496 46-233 (257)
297 TIGR00583 mre11 DNA repair pro 96.7 0.0031 6.8E-08 65.7 6.4 55 291-346 2-68 (405)
298 KOG4340 Uncharacterized conser 96.7 0.012 2.7E-07 57.0 9.7 86 23-108 19-104 (459)
299 cd07380 MPP_CWF19_N Schizosacc 96.6 0.0045 9.7E-08 55.3 6.2 120 296-488 1-121 (150)
300 PLN03077 Protein ECB2; Provisi 96.6 0.019 4.2E-07 66.7 13.1 95 13-108 553-651 (857)
301 PF03704 BTAD: Bacterial trans 96.6 0.016 3.5E-07 51.5 9.8 63 14-76 62-124 (146)
302 PRK04841 transcriptional regul 96.5 0.037 8E-07 64.7 14.9 128 13-142 451-597 (903)
303 cd07398 MPP_YbbF-LpxH Escheric 96.5 0.0046 9.9E-08 59.0 6.0 28 464-491 176-203 (217)
304 KOG1070 rRNA processing protei 96.5 0.04 8.6E-07 63.5 13.9 115 17-131 1533-1649(1710)
305 KOG1915 Cell cycle control pro 96.5 0.073 1.6E-06 54.9 14.5 106 14-120 73-178 (677)
306 PRK04841 transcriptional regul 96.5 0.049 1.1E-06 63.7 15.5 127 13-141 490-635 (903)
307 COG4105 ComL DNA uptake lipopr 96.5 0.22 4.7E-06 47.9 16.7 121 11-131 68-219 (254)
308 COG4186 Predicted phosphoester 96.4 0.0099 2.2E-07 51.9 6.8 74 295-372 6-93 (186)
309 PF13174 TPR_6: Tetratricopept 96.4 0.0059 1.3E-07 38.8 4.2 31 84-114 2-32 (33)
310 KOG2610 Uncharacterized conser 96.4 0.037 7.9E-07 54.7 11.1 121 20-142 109-233 (491)
311 COG2129 Predicted phosphoester 96.4 0.23 5E-06 46.7 15.8 212 292-534 3-224 (226)
312 cd07401 MPP_TMEM62_N Homo sapi 96.3 0.0072 1.6E-07 59.4 6.3 28 469-496 190-217 (256)
313 KOG1586 Protein required for f 96.3 0.1 2.2E-06 49.1 13.2 87 29-115 88-187 (288)
314 PF15015 NYD-SP12_N: Spermatog 96.3 0.049 1.1E-06 55.3 11.7 98 14-111 176-291 (569)
315 KOG2053 Mitochondrial inherita 96.3 0.06 1.3E-06 59.6 13.3 110 9-119 38-147 (932)
316 cd08166 MPP_Cdc1_like_1 unchar 96.3 0.005 1.1E-07 57.2 4.3 45 321-365 43-93 (195)
317 KOG1915 Cell cycle control pro 96.2 0.061 1.3E-06 55.5 12.1 109 24-133 376-488 (677)
318 KOG1586 Protein required for f 96.2 0.4 8.6E-06 45.4 16.4 131 9-142 29-178 (288)
319 PF05843 Suf: Suppressor of fo 96.2 0.083 1.8E-06 52.6 12.9 108 12-119 33-144 (280)
320 cd07386 MPP_DNA_pol_II_small_a 96.2 0.0096 2.1E-07 58.1 6.0 69 296-366 2-95 (243)
321 PF13174 TPR_6: Tetratricopept 96.2 0.011 2.3E-07 37.6 4.3 31 50-80 2-32 (33)
322 cd00839 MPP_PAPs purple acid p 96.2 0.0076 1.7E-07 60.5 5.5 70 293-367 5-83 (294)
323 PF14853 Fis1_TPR_C: Fis1 C-te 96.2 0.03 6.5E-07 40.2 6.9 40 50-89 3-42 (53)
324 PF09613 HrpB1_HrpK: Bacterial 96.2 0.12 2.6E-06 46.1 12.3 116 11-128 7-122 (160)
325 KOG3824 Huntingtin interacting 96.1 0.017 3.7E-07 56.3 7.4 83 10-92 112-194 (472)
326 cd00845 MPP_UshA_N_like Escher 96.1 0.0074 1.6E-07 59.1 4.9 66 294-364 2-81 (252)
327 COG1408 Predicted phosphohydro 96.1 0.011 2.3E-07 58.8 5.9 73 292-367 44-120 (284)
328 PF13176 TPR_7: Tetratricopept 96.1 0.012 2.5E-07 38.6 4.2 26 85-110 2-27 (36)
329 COG4976 Predicted methyltransf 96.0 0.0082 1.8E-07 56.1 4.6 55 26-80 7-61 (287)
330 cd08164 MPP_Ted1 Saccharomyces 96.0 0.0085 1.9E-07 55.6 4.7 68 298-365 22-111 (193)
331 KOG2396 HAT (Half-A-TPR) repea 96.0 0.089 1.9E-06 54.7 12.3 93 33-125 90-183 (568)
332 PF13176 TPR_7: Tetratricopept 96.0 0.013 2.8E-07 38.4 4.3 25 17-41 2-26 (36)
333 PF14561 TPR_20: Tetratricopep 96.0 0.071 1.5E-06 43.1 9.5 48 34-81 8-55 (90)
334 KOG3081 Vesicle coat complex C 96.0 0.15 3.2E-06 49.1 12.9 103 16-118 171-278 (299)
335 cd07384 MPP_Cdc1_like Saccharo 96.0 0.0065 1.4E-07 55.7 3.8 46 321-366 46-101 (171)
336 KOG1070 rRNA processing protei 96.0 0.12 2.5E-06 59.9 13.9 123 9-131 1453-1615(1710)
337 PF14561 TPR_20: Tetratricopep 95.9 0.046 1E-06 44.2 8.0 66 66-131 6-73 (90)
338 KOG3364 Membrane protein invol 95.9 0.19 4.2E-06 43.2 11.8 85 47-131 31-120 (149)
339 KOG1941 Acetylcholine receptor 95.9 0.081 1.8E-06 52.8 10.9 100 13-112 161-276 (518)
340 KOG0546 HSP90 co-chaperone CPR 95.8 0.016 3.4E-07 57.7 5.8 118 14-131 222-358 (372)
341 smart00028 TPR Tetratricopepti 95.8 0.015 3.4E-07 35.7 4.0 30 50-79 3-32 (34)
342 smart00028 TPR Tetratricopepti 95.8 0.015 3.2E-07 35.7 3.9 32 83-114 2-33 (34)
343 KOG3325 Membrane coat complex 95.8 0.1 2.2E-06 45.3 9.9 116 295-493 3-123 (183)
344 KOG4814 Uncharacterized conser 95.8 0.12 2.6E-06 55.2 12.0 96 16-111 356-457 (872)
345 PF10300 DUF3808: Protein of u 95.7 0.075 1.6E-06 57.0 11.0 119 26-144 245-373 (468)
346 COG0420 SbcD DNA repair exonuc 95.7 0.014 3.1E-07 61.2 5.4 74 293-367 1-90 (390)
347 PF10300 DUF3808: Protein of u 95.6 0.11 2.5E-06 55.6 12.0 103 9-111 262-369 (468)
348 KOG2610 Uncharacterized conser 95.4 0.081 1.7E-06 52.3 8.8 133 11-143 134-272 (491)
349 PF02259 FAT: FAT domain; Int 95.3 0.43 9.4E-06 48.8 14.7 122 10-131 142-307 (352)
350 COG4976 Predicted methyltransf 95.2 0.026 5.6E-07 52.9 4.5 61 57-117 4-64 (287)
351 KOG1308 Hsp70-interacting prot 95.2 0.0047 1E-07 61.0 -0.3 80 58-139 124-203 (377)
352 PF09613 HrpB1_HrpK: Bacterial 95.2 0.34 7.3E-06 43.4 11.4 85 49-133 11-95 (160)
353 PF13281 DUF4071: Domain of un 95.2 0.57 1.2E-05 48.1 14.6 85 12-97 177-274 (374)
354 KOG4507 Uncharacterized conser 94.9 0.12 2.5E-06 54.8 8.8 110 10-119 209-320 (886)
355 PF10579 Rapsyn_N: Rapsyn N-te 94.8 0.34 7.3E-06 37.6 8.8 66 12-77 4-72 (80)
356 KOG2471 TPR repeat-containing 94.7 0.037 8.1E-07 57.2 4.5 82 13-94 282-381 (696)
357 TIGR02561 HrpB1_HrpK type III 94.7 0.47 1E-05 41.8 10.7 87 13-99 9-95 (153)
358 COG3914 Spy Predicted O-linked 94.6 0.6 1.3E-05 49.8 13.2 106 20-125 73-185 (620)
359 COG1768 Predicted phosphohydro 94.6 0.056 1.2E-06 48.5 4.8 45 319-367 42-88 (230)
360 PF04184 ST7: ST7 protein; In 94.6 0.56 1.2E-05 49.2 12.7 114 8-121 213-335 (539)
361 PF14582 Metallophos_3: Metall 94.4 0.032 7E-07 52.3 3.0 72 293-366 6-103 (255)
362 cd07410 MPP_CpdB_N Escherichia 94.2 0.051 1.1E-06 54.0 4.4 65 294-364 2-94 (277)
363 PF10602 RPN7: 26S proteasome 94.2 0.73 1.6E-05 42.4 11.6 63 49-111 37-102 (177)
364 COG2912 Uncharacterized conser 94.2 0.3 6.5E-06 47.5 9.2 77 49-125 182-258 (269)
365 PF13281 DUF4071: Domain of un 94.2 0.66 1.4E-05 47.7 12.2 116 14-130 141-273 (374)
366 COG2912 Uncharacterized conser 94.2 0.35 7.5E-06 47.0 9.6 78 15-92 182-259 (269)
367 COG5191 Uncharacterized conser 94.1 0.12 2.6E-06 50.6 6.4 89 37-125 96-185 (435)
368 KOG0530 Protein farnesyltransf 93.9 1 2.2E-05 43.4 11.9 114 18-131 46-162 (318)
369 PRK13184 pknD serine/threonine 93.9 0.45 9.7E-06 54.8 11.4 106 17-123 478-593 (932)
370 COG0790 FOG: TPR repeat, SEL1 93.7 1.6 3.5E-05 43.4 14.2 111 14-129 109-235 (292)
371 KOG3364 Membrane protein invol 93.7 0.78 1.7E-05 39.6 9.7 80 13-92 31-115 (149)
372 COG3118 Thioredoxin domain-con 93.7 0.77 1.7E-05 45.1 11.0 59 49-107 135-193 (304)
373 KOG3662 Cell division control 93.6 0.12 2.7E-06 53.1 5.8 57 308-364 81-143 (410)
374 KOG1550 Extracellular protein 93.6 0.77 1.7E-05 50.4 12.5 113 13-129 243-373 (552)
375 KOG1585 Protein required for f 93.6 2.8 6E-05 40.1 14.1 129 14-142 71-214 (308)
376 KOG2047 mRNA splicing factor [ 93.6 1.3 2.8E-05 47.8 13.3 127 14-142 387-535 (835)
377 PF08424 NRDE-2: NRDE-2, neces 93.6 1.5 3.3E-05 44.6 13.7 91 35-125 6-108 (321)
378 PF07079 DUF1347: Protein of u 93.5 0.54 1.2E-05 48.6 10.0 59 14-73 462-520 (549)
379 PF13374 TPR_10: Tetratricopep 93.5 0.18 3.8E-06 33.6 4.7 29 15-43 3-31 (42)
380 PF09986 DUF2225: Uncharacteri 93.2 0.99 2.1E-05 42.9 10.8 91 25-115 88-198 (214)
381 PF13374 TPR_10: Tetratricopep 93.2 0.2 4.4E-06 33.3 4.6 27 50-76 4-30 (42)
382 KOG3617 WD40 and TPR repeat-co 93.1 0.62 1.3E-05 51.4 10.2 97 15-111 859-996 (1416)
383 cd07412 MPP_YhcR_N Bacillus su 93.1 0.096 2.1E-06 52.4 4.0 67 294-365 2-88 (288)
384 PF07079 DUF1347: Protein of u 93.0 3.4 7.3E-05 43.0 14.6 36 14-49 379-415 (549)
385 PF08424 NRDE-2: NRDE-2, neces 93.0 2.4 5.2E-05 43.1 14.0 105 7-111 12-131 (321)
386 KOG2047 mRNA splicing factor [ 92.8 1.8 3.9E-05 46.7 12.8 128 13-142 476-610 (835)
387 cd07378 MPP_ACP5 Homo sapiens 92.7 0.16 3.4E-06 50.5 4.9 71 294-365 2-83 (277)
388 PLN02533 probable purple acid 92.7 0.12 2.6E-06 54.6 4.2 70 293-366 140-212 (427)
389 TIGR02561 HrpB1_HrpK type III 92.5 1.8 4E-05 38.1 10.5 83 51-133 13-95 (153)
390 PF08631 SPO22: Meiosis protei 92.3 5.9 0.00013 39.3 15.5 103 11-113 32-152 (278)
391 COG2976 Uncharacterized protei 92.1 6.5 0.00014 36.4 14.0 88 51-142 92-183 (207)
392 cd07408 MPP_SA0022_N Staphyloc 92.1 0.21 4.6E-06 49.0 4.9 65 294-364 2-81 (257)
393 KOG4151 Myosin assembly protei 92.0 0.66 1.4E-05 51.2 8.7 117 12-128 51-173 (748)
394 PF04910 Tcf25: Transcriptiona 91.9 2.6 5.6E-05 43.6 12.7 82 41-122 33-144 (360)
395 KOG1310 WD40 repeat protein [G 91.8 0.35 7.7E-06 50.7 6.1 82 59-142 385-469 (758)
396 COG3914 Spy Predicted O-linked 91.8 1.9 4.1E-05 46.2 11.5 106 25-131 41-150 (620)
397 KOG2300 Uncharacterized conser 91.7 5.1 0.00011 42.0 14.2 98 12-112 365-475 (629)
398 PF12862 Apc5: Anaphase-promot 91.7 0.69 1.5E-05 37.6 6.7 29 84-112 43-71 (94)
399 PF10602 RPN7: 26S proteasome 91.7 1.8 3.8E-05 39.9 10.2 98 11-108 33-139 (177)
400 PF12862 Apc5: Anaphase-promot 91.5 0.96 2.1E-05 36.8 7.4 55 23-77 7-70 (94)
401 PF02259 FAT: FAT domain; Int 91.4 2.7 5.8E-05 42.9 12.5 102 13-114 183-341 (352)
402 COG3898 Uncharacterized membra 91.2 3 6.5E-05 42.5 11.6 97 14-111 120-217 (531)
403 cd07411 MPP_SoxB_N Thermus the 91.1 0.31 6.6E-06 48.1 4.8 65 295-365 3-95 (264)
404 PF04781 DUF627: Protein of un 91.0 2.2 4.8E-05 35.6 8.9 72 54-125 2-87 (111)
405 KOG3617 WD40 and TPR repeat-co 90.9 2.3 4.9E-05 47.3 11.2 90 49-140 859-989 (1416)
406 cd07387 MPP_PolD2_C PolD2 (DNA 90.8 5.9 0.00013 38.7 13.3 51 479-534 205-257 (257)
407 KOG0918 Selenium-binding prote 90.7 0.01 2.2E-07 59.6 -5.9 216 288-527 25-252 (476)
408 PF10373 EST1_DNA_bind: Est1 D 90.6 0.87 1.9E-05 44.9 7.7 62 67-128 1-62 (278)
409 COG5191 Uncharacterized conser 90.5 0.45 9.7E-06 46.8 5.1 82 7-88 100-182 (435)
410 COG3629 DnrI DNA-binding trans 90.4 1.5 3.2E-05 43.3 8.7 80 30-111 137-216 (280)
411 KOG4814 Uncharacterized conser 90.3 1.9 4.2E-05 46.4 9.9 81 51-131 357-443 (872)
412 PF09986 DUF2225: Uncharacteri 90.2 3.2 7E-05 39.4 10.7 80 11-90 115-208 (214)
413 PF07720 TPR_3: Tetratricopept 90.2 1 2.2E-05 29.4 5.1 17 54-70 7-23 (36)
414 KOG1550 Extracellular protein 90.1 4.1 8.9E-05 44.8 12.9 107 16-128 290-408 (552)
415 KOG0529 Protein geranylgeranyl 90.0 3.6 7.7E-05 42.3 11.2 104 27-130 88-197 (421)
416 KOG1258 mRNA processing protei 89.9 11 0.00024 40.6 15.2 125 8-132 291-416 (577)
417 PRK15180 Vi polysaccharide bio 89.5 3.9 8.4E-05 42.8 11.1 100 22-121 297-396 (831)
418 PF07720 TPR_3: Tetratricopept 89.3 1.3 2.8E-05 29.0 5.0 33 83-115 2-36 (36)
419 PF07721 TPR_4: Tetratricopept 89.3 0.55 1.2E-05 28.1 3.1 24 83-106 2-25 (26)
420 PF12968 DUF3856: Domain of Un 89.0 4 8.6E-05 34.6 8.8 64 14-77 55-129 (144)
421 COG3629 DnrI DNA-binding trans 88.8 7.5 0.00016 38.4 12.3 61 81-143 152-212 (280)
422 PF10516 SHNi-TPR: SHNi-TPR; 88.6 0.78 1.7E-05 30.4 3.6 26 51-76 4-29 (38)
423 KOG1839 Uncharacterized protei 88.4 1.3 2.8E-05 51.6 7.6 130 10-142 928-1081(1236)
424 KOG2300 Uncharacterized conser 88.2 9.2 0.0002 40.2 12.7 128 12-141 5-150 (629)
425 KOG2396 HAT (Half-A-TPR) repea 88.1 3 6.4E-05 43.9 9.2 76 13-88 104-180 (568)
426 PF10373 EST1_DNA_bind: Est1 D 88.1 1.5 3.2E-05 43.3 7.2 62 33-94 1-62 (278)
427 PF10516 SHNi-TPR: SHNi-TPR; 88.0 1 2.2E-05 29.8 3.9 30 83-112 2-31 (38)
428 KOG1839 Uncharacterized protei 87.9 3.2 7E-05 48.5 10.3 123 9-131 968-1114(1236)
429 cd07409 MPP_CD73_N CD73 ecto-5 87.9 0.9 2E-05 45.2 5.4 66 294-364 2-93 (281)
430 COG3898 Uncharacterized membra 87.5 13 0.00027 38.2 13.0 109 23-131 163-278 (531)
431 PF08631 SPO22: Meiosis protei 87.5 11 0.00025 37.3 13.1 104 24-127 3-132 (278)
432 TIGR00282 metallophosphoestera 87.4 0.95 2.1E-05 44.5 5.1 69 293-366 1-72 (266)
433 COG0790 FOG: TPR repeat, SEL1 87.4 8.4 0.00018 38.3 12.2 108 16-127 75-198 (292)
434 PF04910 Tcf25: Transcriptiona 87.4 7.6 0.00016 40.1 12.0 104 11-114 100-225 (360)
435 COG3855 Fbp Uncharacterized pr 86.7 0.46 1E-05 48.9 2.5 43 321-368 191-233 (648)
436 PRK09419 bifunctional 2',3'-cy 85.9 0.87 1.9E-05 54.7 4.7 67 293-364 661-735 (1163)
437 COG1311 HYS2 Archaeal DNA poly 85.8 4.4 9.6E-05 42.6 9.1 220 293-536 226-472 (481)
438 cd07406 MPP_CG11883_N Drosophi 85.5 1.2 2.6E-05 43.8 4.8 57 303-364 21-82 (257)
439 KOG2476 Uncharacterized conser 85.5 1.7 3.7E-05 45.0 5.8 69 293-362 6-75 (528)
440 KOG0529 Protein geranylgeranyl 85.4 17 0.00037 37.6 12.8 109 23-131 37-160 (421)
441 COG4649 Uncharacterized protei 85.2 20 0.00044 32.6 11.7 56 20-75 64-121 (221)
442 KOG2863 RNA lariat debranching 84.7 1 2.2E-05 45.1 3.7 75 293-367 1-90 (456)
443 PF14863 Alkyl_sulf_dimr: Alky 84.6 4.2 9.2E-05 35.8 7.2 47 51-97 73-119 (141)
444 PF10579 Rapsyn_N: Rapsyn N-te 84.5 9 0.0002 29.9 8.0 61 51-111 9-72 (80)
445 PF07721 TPR_4: Tetratricopept 84.4 1.2 2.5E-05 26.6 2.6 22 50-71 3-24 (26)
446 KOG0530 Protein farnesyltransf 84.4 12 0.00026 36.4 10.5 97 27-123 91-188 (318)
447 KOG1914 mRNA cleavage and poly 84.2 4.9 0.00011 42.7 8.6 102 7-110 13-115 (656)
448 PF15015 NYD-SP12_N: Spermatog 84.1 5.9 0.00013 40.8 8.8 81 55-137 183-281 (569)
449 PRK15180 Vi polysaccharide bio 84.0 2.7 5.8E-05 43.9 6.5 99 17-115 326-424 (831)
450 KOG0985 Vesicle coat protein c 83.8 27 0.00058 40.3 14.3 88 20-112 1054-1163(1666)
451 COG4455 ImpE Protein of avirul 83.0 10 0.00022 35.9 9.2 62 56-117 9-70 (273)
452 KOG3807 Predicted membrane pro 83.0 32 0.0007 34.5 13.1 94 18-113 188-306 (556)
453 COG3947 Response regulator con 82.7 4.9 0.00011 39.5 7.3 54 55-108 286-339 (361)
454 cd00842 MPP_ASMase acid sphing 82.0 2.2 4.8E-05 42.7 5.2 71 297-368 42-125 (296)
455 COG4455 ImpE Protein of avirul 81.5 44 0.00095 31.7 12.7 63 20-82 7-69 (273)
456 KOG2581 26S proteasome regulat 80.9 21 0.00046 36.8 11.3 102 14-115 169-280 (493)
457 PF11207 DUF2989: Protein of u 80.8 7.3 0.00016 36.3 7.5 70 31-102 123-198 (203)
458 PF10345 Cohesin_load: Cohesin 80.4 53 0.0011 36.6 15.8 108 11-119 56-178 (608)
459 KOG0546 HSP90 co-chaperone CPR 80.2 1.1 2.3E-05 45.1 2.0 84 14-97 275-358 (372)
460 KOG0890 Protein kinase of the 79.8 21 0.00046 44.7 12.7 117 8-126 1664-1799(2382)
461 KOG1914 mRNA cleavage and poly 79.8 19 0.00041 38.5 10.9 73 38-111 10-82 (656)
462 COG2909 MalT ATP-dependent tra 78.9 58 0.0013 37.1 14.9 99 15-113 416-528 (894)
463 COG3947 Response regulator con 78.7 7 0.00015 38.4 6.9 59 17-75 282-340 (361)
464 KOG2422 Uncharacterized conser 78.6 70 0.0015 34.7 14.6 101 8-108 278-404 (665)
465 cd07405 MPP_UshA_N Escherichia 78.1 2 4.4E-05 42.8 3.3 65 295-364 3-86 (285)
466 PF11207 DUF2989: Protein of u 77.6 10 0.00023 35.3 7.5 71 65-138 123-198 (203)
467 cd07407 MPP_YHR202W_N Saccharo 77.5 2.4 5.1E-05 42.2 3.6 67 294-365 7-97 (282)
468 cd02682 MIT_AAA_Arch MIT: doma 77.5 16 0.00036 28.2 7.4 32 12-43 4-35 (75)
469 TIGR03504 FimV_Cterm FimV C-te 76.9 10 0.00022 26.0 5.5 25 86-110 3-27 (44)
470 KOG1378 Purple acid phosphatas 76.5 12 0.00026 39.3 8.4 35 467-501 322-356 (452)
471 KOG3947 Phosphoesterases [Gene 76.0 3.7 8E-05 39.9 4.2 70 290-367 59-128 (305)
472 KOG1432 Predicted DNA repair e 76.0 2.8 6E-05 42.0 3.5 47 320-367 100-149 (379)
473 PF11817 Foie-gras_1: Foie gra 75.7 27 0.00058 34.0 10.4 58 50-107 180-243 (247)
474 PF14863 Alkyl_sulf_dimr: Alky 75.6 14 0.0003 32.6 7.4 51 81-131 69-119 (141)
475 smart00386 HAT HAT (Half-A-TPR 75.5 6.7 0.00015 23.9 4.2 29 28-56 1-29 (33)
476 cd08162 MPP_PhoA_N Synechococc 75.3 3.5 7.7E-05 41.7 4.2 65 295-364 3-90 (313)
477 cd07382 MPP_DR1281 Deinococcus 75.1 5.9 0.00013 38.7 5.6 67 294-365 1-70 (255)
478 KOG2422 Uncharacterized conser 74.9 40 0.00086 36.5 11.7 104 26-129 250-390 (665)
479 KOG2041 WD40 repeat protein [G 74.7 14 0.00031 40.5 8.5 80 48-141 796-875 (1189)
480 PF04042 DNA_pol_E_B: DNA poly 74.6 3.3 7E-05 39.1 3.6 72 295-367 1-93 (209)
481 PF10255 Paf67: RNA polymerase 74.1 14 0.00031 38.5 8.3 56 19-75 127-191 (404)
482 PRK09420 cpdB bifunctional 2', 73.8 3.8 8.3E-05 45.9 4.4 66 294-364 27-121 (649)
483 PF11817 Foie-gras_1: Foie gra 72.6 20 0.00042 34.9 8.6 62 14-75 178-245 (247)
484 PF13226 DUF4034: Domain of un 72.6 44 0.00096 33.0 10.9 122 20-141 6-158 (277)
485 PF09670 Cas_Cas02710: CRISPR- 72.3 55 0.0012 34.1 12.3 63 15-77 132-198 (379)
486 smart00386 HAT HAT (Half-A-TPR 71.6 12 0.00026 22.7 4.7 27 97-123 2-28 (33)
487 COG0737 UshA 5'-nucleotidase/2 71.0 4.2 9.1E-05 44.3 3.8 68 294-366 28-116 (517)
488 TIGR01390 CycNucDiestase 2',3' 70.8 5 0.00011 44.8 4.4 66 294-364 4-98 (626)
489 COG4941 Predicted RNA polymera 70.6 31 0.00068 34.7 9.2 96 29-125 311-408 (415)
490 KOG3339 Predicted glycosyltran 70.6 12 0.00027 34.1 5.9 85 322-411 40-140 (211)
491 KOG2041 WD40 repeat protein [G 70.3 30 0.00065 38.2 9.6 89 8-108 790-878 (1189)
492 COG3855 Fbp Uncharacterized pr 69.4 31 0.00068 36.1 9.2 58 465-522 514-580 (648)
493 KOG0686 COP9 signalosome, subu 69.2 32 0.0007 35.5 9.2 25 16-40 152-176 (466)
494 cd02682 MIT_AAA_Arch MIT: doma 68.6 23 0.00049 27.5 6.3 34 98-131 29-62 (75)
495 KOG0985 Vesicle coat protein c 68.4 37 0.00081 39.2 10.2 117 17-141 1197-1338(1666)
496 cd02681 MIT_calpain7_1 MIT: do 68.3 12 0.00026 29.1 4.8 32 12-43 4-35 (76)
497 PF04212 MIT: MIT (microtubule 67.9 13 0.00029 28.0 5.0 31 13-43 4-34 (69)
498 cd02683 MIT_1 MIT: domain cont 66.8 14 0.0003 28.8 4.9 31 12-42 4-34 (77)
499 PTZ00235 DNA polymerase epsilo 66.4 16 0.00036 36.1 6.4 78 289-366 24-123 (291)
500 PF11846 DUF3366: Domain of un 66.3 30 0.00065 32.1 8.1 50 64-114 127-176 (193)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-84 Score=585.43 Aligned_cols=284 Identities=42% Similarity=0.753 Sum_probs=276.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeec
Q 008730 249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 328 (556)
Q Consensus 249 i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflG 328 (556)
+++.++++++...+++.+|..||.++.++|.+|+++++++.| ++|+||||||++||+.+|+..|-++++ +|+|||
T Consensus 3 ldr~ie~L~~~~li~E~eV~~LC~~~~eiL~~E~NV~~i~tP----vtvcGDIHGQf~Dllelf~igG~~~~t-~YLFLG 77 (303)
T KOG0372|consen 3 LDRQIEQLRRCELIAESEVKALCAKVREILVEESNVQRIDTP----VTVCGDIHGQFYDLLELFRIGGDVPET-NYLFLG 77 (303)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCceecCCC----cEEeecccchHHHHHHHHHhCCCCCCC-ceEeec
Confidence 678999999999999999999999999999999999999998 999999999999999999998888765 599999
Q ss_pred ccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhh-HHHHHHHHHHhcccccccccCCeEE
Q 008730 329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKVF 407 (556)
Q Consensus 329 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~lP~~~~i~~~~~ 407 (556)
||||||-.|+|++.+|+.||++||++|++||||||++.++..|||++||.+||+ ..+|+.+.+.|+.||++|+|++++|
T Consensus 78 DyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~~~vWr~c~eiFdyL~l~aiid~kif 157 (303)
T KOG0372|consen 78 DYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSANVWRYCTEIFDYLSLAAIIDGKIF 157 (303)
T ss_pred chhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCChHHHHHHHHHHHhhhHhheecCcEE
Confidence 999999999999999999999999999999999999999999999999999996 5899999999999999999999999
Q ss_pred EEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccc
Q 008730 408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEV 487 (556)
Q Consensus 408 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~ 487 (556)
|||||+ ||.+.++++|+.++|..+.|+++.++|+|||||.+..||..++||+|+.||.++++.|++.||+++|+|+||.
T Consensus 158 CVHGGl-SP~i~~lDqIr~lDR~~Eiph~g~m~DllWSDPee~~g~~~SPRGaGylFG~dvv~~F~~~N~~~~I~RaHQL 236 (303)
T KOG0372|consen 158 CVHGGL-SPSIQTLDQIRVLDRKQEVPHDGAMCDLLWSDPEEGPGWGLSPRGAGYLFGEDVVESFLEANGLSLICRAHQL 236 (303)
T ss_pred EEcCCC-CcchhhHHHHHHhhccccCCCCCcchheeccCcccCCCcccCCCCccccccHHHHHHHHHhCChHHHHHHHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCC
Q 008730 488 KDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPH 539 (556)
Q Consensus 488 ~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~ 539 (556)
+++||++.|+++|+|||||||||++++|.||||.| +++....|..|++.|.
T Consensus 237 v~eGyk~~F~~~v~TVWSAPNYCYrCGN~AsIl~l-de~~~~~F~vFeaa~~ 287 (303)
T KOG0372|consen 237 VMEGYKWHFDEKVVTVWSAPNYCYRCGNVAAILEL-DEDLDKDFRVFEAAPQ 287 (303)
T ss_pred HHhhHHHhcCCceEEEecCCchhhhcCChHHheee-ccccCcceEeeecchh
Confidence 99999999999999999999999999999999999 7888889999999874
No 2
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=1.7e-79 Score=609.37 Aligned_cols=316 Identities=71% Similarity=1.236 Sum_probs=304.1
Q ss_pred CCCcccCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHH
Q 008730 234 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE 313 (556)
Q Consensus 234 ~~g~~l~~~~it~~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~ 313 (556)
|+||+++++.+|.++++++++.+++++.++..++.+||.++.++|+++|++++++.|..++++||||||||+.+|.++|+
T Consensus 1 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~ 80 (316)
T cd07417 1 YDGPRLEDEKVTLEFVKEMIEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFE 80 (316)
T ss_pred CCCcccCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHH
Confidence 78999999889999999999999999999999999999999999999999999998877889999999999999999999
Q ss_pred hcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHh
Q 008730 314 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF 393 (556)
Q Consensus 314 ~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 393 (556)
..|+++.+++|||||||||||++|+||+.+|+++|+.+|++|++||||||.+.++..|||..|+..+|+..++..+.++|
T Consensus 81 ~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~~~l~~~~~~~f 160 (316)
T cd07417 81 LNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLFSEVF 160 (316)
T ss_pred hcCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhcccHHHHHHHHHHH
Confidence 99998777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHH
Q 008730 394 CCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFL 473 (556)
Q Consensus 394 ~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl 473 (556)
.+||++++++++++||||||+++...+++++++++|+.+++.+++++|+|||||.+..++.+++||.|+.||++++++||
T Consensus 161 ~~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~s~Rg~g~~fg~~~~~~Fl 240 (316)
T cd07417 161 NWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQPGRSPSKRGVGCQFGPDVTKRFL 240 (316)
T ss_pred HhchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccccceeeeecCCCCCCCCCccCCCCceEeCHHHHHHHH
Confidence 99999999999999999999777889999999999999888999999999999998889999999999999999999999
Q ss_pred HHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCcccchh
Q 008730 474 QDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYAN 549 (556)
Q Consensus 474 ~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (556)
++||+++||||||++++||++.++++|+||||||||||..+|+||+|.|...+++++|++|++.|+|.+.||+|+|
T Consensus 241 ~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (316)
T cd07417 241 EENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPHPNVKPMAYAN 316 (316)
T ss_pred HHcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcceEEEEEeCCCceeeeEeccCCCCCCCCccCCCC
Confidence 9999999999999999999999999999999999999999999999999433899999999999999999999986
No 3
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=5e-79 Score=608.34 Aligned_cols=471 Identities=65% Similarity=1.088 Sum_probs=442.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
.+..+.+.++.++..++|+.|+..|.+|++++|+++..+.+++.++.+.++|..|+.++.+|++++|....+|++.|.+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 35667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCCCccccccc-cccccccCCCCCccchhHHH
Q 008730 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADS-IDYQSIGMSPSSSFVSTQAA 171 (556)
Q Consensus 93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~~~~~~~~-~~~~~l~~~p~~~~~~~~~~ 171 (556)
.+++++.+|...|++...+.|+++.+...+..|.....+.+++.|+........+.... ++
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~~~~~~------------------ 144 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVVEMKID------------------ 144 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCccccccccc------------------
Confidence 99999999999999999999999999999999999888877888876655222211000 11
Q ss_pred HHHhhhhhhhHhhhcccHHHHHHHHhHHHHHHHHHhhhcccCCCCCCccccccccccc-cCCCCCCcccCCCCCCHHHHH
Q 008730 172 ILAATATVVVAVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELE-VEPQYSGARIEGDVITLDFVK 250 (556)
Q Consensus 172 ~~~~~~~~~~a~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~l~~~~it~~~i~ 250 (556)
.|. .. ++..|.|+.++...+|.++++
T Consensus 145 -----------------------------------------~~~------------~~~i~~~y~g~~le~~kvt~e~vk 171 (476)
T KOG0376|consen 145 -----------------------------------------EED------------MDLIESDYSGPVLEDHKVTLEFVK 171 (476)
T ss_pred -----------------------------------------ccc------------ccccccccCCcccccchhhHHHHH
Confidence 011 11 678889999998679999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeeccc
Q 008730 251 KMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDF 330 (556)
Q Consensus 251 ~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~ 330 (556)
.+++.+++++.++..++..|+..+.++++.+|+++++..|...++.|+||+||++.++.++|+..|.|+.+..|+|.||+
T Consensus 172 ~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ylfngdf 251 (476)
T KOG0376|consen 172 TLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDF 251 (476)
T ss_pred HHHHhhhcccccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcccccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEe
Q 008730 331 VDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVH 410 (556)
Q Consensus 331 vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vH 410 (556)
||||..|.|+...++..|+.+|+++|++|||||+..++..|||.+++..+|.++.+..+.+.|..||++..|+++++.+|
T Consensus 252 v~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~~~f~~LPl~~~i~~~~~~~h 331 (476)
T KOG0376|consen 252 VDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFSEVFIWLPLAHLINNKVLVMH 331 (476)
T ss_pred eeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhhhhhccccchhhhcCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeecccccc
Q 008730 411 GGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDE 490 (556)
Q Consensus 411 gGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~ 490 (556)
||+|++...+++++++|.|+..+++.+.++++|||||....|.+++.||.|..||++++++||+.|+++.||||||+.+.
T Consensus 332 gglf~~~~v~l~d~r~i~r~~~~~~~~~~~~~lws~pq~~~g~s~S~r~~g~~fG~d~t~~f~~~n~l~~i~rshe~~d~ 411 (476)
T KOG0376|consen 332 GGLFSPDGVTLEDFRNIDRFEQPPEEGLMCELLWSDPQPANGRSPSKRGVGLQFGPDVTERFLQDNNLDKIIRSHEVKDE 411 (476)
T ss_pred cCcCCCCCccHHHHHhhhhccCCcccccccccccCCCccccCCCccccCceeeeCCCchhhHHhhcchHHHhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCcccchhhhhhh
Q 008730 491 GYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFLRM 554 (556)
Q Consensus 491 G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (556)
||++.|+|+|+|||||||||+..+|.||++.++.+++++.+++|+++|||.++||+|+|.++++
T Consensus 412 gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~~~~~ma~~ns~~~~ 475 (476)
T KOG0376|consen 412 GYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHPDVKPMAYANSLLQW 475 (476)
T ss_pred ceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCCCCCCcccccccccC
Confidence 9999999999999999999999999999999988999999999999999999999999997765
No 4
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=2.8e-74 Score=569.64 Aligned_cols=289 Identities=44% Similarity=0.810 Sum_probs=268.3
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCC
Q 008730 244 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENP 323 (556)
Q Consensus 244 it~~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~ 323 (556)
+|.+.++++++.+.++..++..++..||.++.++|++||++++++.|...+++||||||||+++|.++|+..|+++.+++
T Consensus 2 ~~~~~~~~~i~~~~~~~~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~~~~~~~ 81 (321)
T cd07420 2 LTKDHIDALIEAFKEKQLLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLPSPENP 81 (321)
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCCCCccce
Confidence 78889999999999999999999999999999999999999999987677899999999999999999999999877778
Q ss_pred eeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhh---HHHHHHHHHHhccccccc
Q 008730 324 YLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS---ETFVELFAEVFCCLPLAH 400 (556)
Q Consensus 324 ~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~lP~~~ 400 (556)
|||||||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||..||..+|+ ..+|+.+.++|++||++|
T Consensus 82 ~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~~~~l~~~~~~~F~~LPlaa 161 (321)
T cd07420 82 YVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLAT 161 (321)
T ss_pred EEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCccHHHHHHHHHHHHHhCCceE
Confidence 99999999999999999999999999999999999999999999999999999999997 789999999999999999
Q ss_pred ccCCeEEEEecccccCCCCChhhhhhcccCCC-----CCC----------------------ccchhhhhcCCCCCCCC-
Q 008730 401 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCE-----PPE----------------------EGLMCELLWSDPQPLPG- 452 (556)
Q Consensus 401 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~-----~~~----------------------~~~~~~llw~dp~~~~~- 452 (556)
+|++++||||||| ++ ..++++|+.++|+.. ++. .+.+.|+|||||.+..+
T Consensus 162 ii~~~i~cvHGGi-~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLWSDP~~~~~~ 239 (321)
T cd07420 162 IIDNKILVVHGGI-SD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPKAQKGC 239 (321)
T ss_pred EEcCCEEEEeCCC-CC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhheeeecCCccCCCC
Confidence 9999999999999 55 578999999988421 111 14678999999997666
Q ss_pred CCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEE
Q 008730 453 RGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIV 532 (556)
Q Consensus 453 ~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~ 532 (556)
|.+++||.|+.||++++++||++||+++||||||++++||++.++++|+||||||||||..+|+||||.| +++++++|+
T Consensus 240 ~~~~~RG~g~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~gavl~i-~~~~~~~f~ 318 (321)
T cd07420 240 KPNTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRGAYIKL-GPDLTPHFV 318 (321)
T ss_pred CccCCCCCccccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccEEEEEE-CCCCceeEE
Confidence 6677899999999999999999999999999999999999999999999999999999999999999999 889999999
Q ss_pred EEe
Q 008730 533 TFA 535 (556)
Q Consensus 533 ~~~ 535 (556)
+|.
T Consensus 319 ~~~ 321 (321)
T cd07420 319 QYQ 321 (321)
T ss_pred EeC
Confidence 883
No 5
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-76 Score=521.50 Aligned_cols=287 Identities=39% Similarity=0.695 Sum_probs=277.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeee
Q 008730 248 FVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN 327 (556)
Q Consensus 248 ~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vfl 327 (556)
++++.|+..+.++-+++.++..||+.++++|..|.+++.++.| +.|+||||||+.||+++|+..|-.|.++ |||+
T Consensus 5 d~d~wi~~vk~ckyLpE~elk~LCe~v~d~L~eEsNvqPV~tP----VTvCGDIHGQFyDL~eLFrtgG~vP~tn-YiFm 79 (306)
T KOG0373|consen 5 DLDQWIETVKKCKYLPENELKRLCEMVKDILMEESNVQPVSTP----VTVCGDIHGQFYDLLELFRTGGQVPDTN-YIFM 79 (306)
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCccccCCC----eeEeeccchhHHHHHHHHHhcCCCCCcc-eEEe
Confidence 3678899999999999999999999999999999999999988 9999999999999999999998877554 9999
Q ss_pred cccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhh-HHHHHHHHHHhcccccccccCCeE
Q 008730 328 GDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKV 406 (556)
Q Consensus 328 GD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~lP~~~~i~~~~ 406 (556)
|||||||..|+|++.+|+.||.+||.+|.+||||||.+.+...|||++||..||+ .+.|+.+.++|+.|+++|+|++++
T Consensus 80 GDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGnan~wkycckVFD~LtlaAiID~~v 159 (306)
T KOG0373|consen 80 GDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNANVWKYCCKVFDFLTLAAIIDEKV 159 (306)
T ss_pred ccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCchHHHHHHHHHhhhhHHHHhcCcE
Confidence 9999999999999999999999999999999999999999999999999999996 589999999999999999999999
Q ss_pred EEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeecc
Q 008730 407 FVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHE 486 (556)
Q Consensus 407 ~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~ 486 (556)
+|||||+ ||++.++++|+.++|..++|+++.+||++||||.+...|..++||+||.||.+++.+|...|++++|.|+||
T Consensus 160 LCVHGGL-SPdirtlDqir~i~R~qEiPh~G~fcDlmWSDPedve~W~vSpRGAGwlFGskVt~eF~~iN~L~LicRaHQ 238 (306)
T KOG0373|consen 160 LCVHGGL-SPDIRTLDQIRLIERNQEIPHEGPFCDLMWSDPEDVETWAVSPRGAGWLFGSKVTTEFNHINNLNLICRAHQ 238 (306)
T ss_pred EEEcCCC-CccceeHHHHHhHHhhccCCCCCCccceeccChhhhhhheeCCCCcceeechhhhHHHHhccchHHHHhHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCceEecCCe-EEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCC
Q 008730 487 VKDEGYEIEHDGK-LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPD 541 (556)
Q Consensus 487 ~~~~G~~~~~~~~-~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~ 541 (556)
.+++||++.|+.| ++|||||||||.+++|.++||.+ +++++.++..|.++|...
T Consensus 239 LV~EG~KymF~eK~lvTVWSAPNYCYRCGNvAsi~~~-d~~~~r~~k~F~avpd~~ 293 (306)
T KOG0373|consen 239 LVQEGFKYMFDEKGLVTVWSAPNYCYRCGNVASIMSF-DDNLERETKIFSAVPDNS 293 (306)
T ss_pred HHHhhHHhccCCCCEEEEecCCchhhhccCeeeEEEe-cccCCccceeeeecCCcc
Confidence 9999999999998 99999999999999999999999 899999999999987753
No 6
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=1.9e-71 Score=545.36 Aligned_cols=283 Identities=42% Similarity=0.764 Sum_probs=270.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeec
Q 008730 249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 328 (556)
Q Consensus 249 i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflG 328 (556)
++++++++.+++.++.+++.+||+++.++|++||++++++.| ++||||||||+.+|.++|+..++++. ++|||||
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~e~~~~~i~~~----i~vvGDIHG~~~dL~~ll~~~~~~~~-~~~lfLG 76 (285)
T cd07415 2 LDKWIEQLKKCELLPESEVKSLCEKAKEILVKESNVQRVRSP----VTVCGDIHGQFYDLLELFRVGGDPPD-TNYLFLG 76 (285)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEecCCC----EEEEEeCCCCHHHHHHHHHHcCCCCC-CeEEEEe
Confidence 577899999889999999999999999999999999999866 99999999999999999999998754 5699999
Q ss_pred ccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhh-HHHHHHHHHHhcccccccccCCeEE
Q 008730 329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKVF 407 (556)
Q Consensus 329 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~lP~~~~i~~~~~ 407 (556)
||||||++|+||+.+++++|+.+|++|++||||||.+.++..|||..||..+|+ ..+|+.+.++|..||++++++++++
T Consensus 77 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~~~l~~~~~~~f~~lPlaaii~~~i~ 156 (285)
T cd07415 77 DYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIF 156 (285)
T ss_pred EECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCchHHHHHHHHHHHHhHHHhEeCCeEE
Confidence 999999999999999999999999999999999999999999999999999997 4899999999999999999999999
Q ss_pred EEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccc
Q 008730 408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEV 487 (556)
Q Consensus 408 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~ 487 (556)
|||||| +|...++++|+.++|+.+++.++.+.|+|||||.+..+|.+++||.|+.||++++++||++||+++||||||+
T Consensus 157 cvHgGi-~p~~~~~~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~ 235 (285)
T cd07415 157 CVHGGL-SPSIDTLDQIRAIDRFQEVPHEGPMCDLLWSDPDDIEGWGISPRGAGYLFGQDVVEEFNHNNGLTLICRAHQL 235 (285)
T ss_pred EEcCCC-CCCcccHHHhhcccCCCCCCCCCCccceEecCCCccCCCCcCCCCCccccCHHHHHHHHHHCCCeEEEEcCcc
Confidence 999999 8999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred cccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCC
Q 008730 488 KDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVP 538 (556)
Q Consensus 488 ~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~ 538 (556)
+++||++.++++|+|||||||||+..+|+||+|.| +++++++|++|++.|
T Consensus 236 ~~~G~~~~~~~~~~TvfSa~~y~~~~~n~~a~l~i-~~~~~~~~~~~~~~~ 285 (285)
T cd07415 236 VMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMEL-DEHLKRSFKVFEAAP 285 (285)
T ss_pred ccceEEEecCCcEEEEecCCcccCCCCceEEEEEE-CCCCcEeEEEeccCC
Confidence 99999999999999999999999999999999999 888999999998754
No 7
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=5.2e-71 Score=548.17 Aligned_cols=288 Identities=42% Similarity=0.758 Sum_probs=270.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeec
Q 008730 249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 328 (556)
Q Consensus 249 i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflG 328 (556)
++-|++.+++++.+++.++.+||++|+++|++||++++++.| ++||||||||+.+|.++|+..+.++ .++|||||
T Consensus 3 ~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~l~~i~~~----i~ViGDIHG~~~dL~~l~~~~g~~~-~~~ylFLG 77 (305)
T cd07416 3 IDVLKAHFMREGRLSEEDALRIITEGAEILRQEPNLLRIEAP----VTVCGDIHGQFYDLLKLFEVGGSPA-NTRYLFLG 77 (305)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEccCCC----EEEEEeCCCCHHHHHHHHHhcCCCC-CceEEEEC
Confidence 566889999999999999999999999999999999999876 9999999999999999999999875 46799999
Q ss_pred ccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEE
Q 008730 329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV 408 (556)
Q Consensus 329 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~ 408 (556)
||||||++|+||+.+|+++|+.+|.+|++||||||.+.++..|||..|+..+|+..+|..+.++|.+||++++++++++|
T Consensus 78 DyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~~~l~~~~~~~f~~LPlaaii~~~i~~ 157 (305)
T cd07416 78 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMEAFDCLPLAALMNQQFLC 157 (305)
T ss_pred CccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhccHHHHHHHHHHHhhccceeEEcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCC-------CCCc-CCCCCccccCHHHHHHHHHHCCCCE
Q 008730 409 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLP-------GRGP-SKRGVGLSFGADVTKRFLQDNSLDL 480 (556)
Q Consensus 409 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~-------~~~~-~~rg~g~~fg~~~~~~fl~~~~~~~ 480 (556)
||||| +|...++++|++++|+.+++..++++|+|||||.... +|.+ ++||.|+.||++++++||++||+++
T Consensus 158 vHGGi-~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g~~fG~~~~~~Fl~~n~l~~ 236 (305)
T cd07416 158 VHGGL-SPELKTLDDIRKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKNNLLS 236 (305)
T ss_pred EcCCC-CcccccHHHhcccCCCCCCCCCCcceeeeecCcccccccccccccccccCCCCCceecCHHHHHHHHHHcCCeE
Confidence 99999 8999999999999999988889999999999997643 3554 4899999999999999999999999
Q ss_pred EEeeccccccCceEecCC------eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCc
Q 008730 481 VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKP 544 (556)
Q Consensus 481 iir~H~~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (556)
||||||++++||++++++ +||||||||||||..+|+||+|.| +++ .++|.+|.++|||.+.|
T Consensus 237 iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i-~~~-~~~~~~~~~~~~~~~~~ 304 (305)
T cd07416 237 IIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKY-ENN-VMNIRQFNCSPHPYWLP 304 (305)
T ss_pred EEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCceEEEEEE-cCC-cceEEEecCCCCCCCCC
Confidence 999999999999999886 999999999999999999999999 555 46999999999999987
No 8
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=1.1e-70 Score=543.01 Aligned_cols=285 Identities=36% Similarity=0.759 Sum_probs=267.0
Q ss_pred HHHHHHHhhcCC--------CCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCC
Q 008730 249 VKKMMDDFKNQK--------CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE 320 (556)
Q Consensus 249 i~~~i~~~~~~~--------~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~ 320 (556)
++++++.+...+ .++..++.+||+++.++|++||++++++.| ++|||||||++.+|.++|+..++++.
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~----i~vvGDIHG~~~dL~~l~~~~g~~~~ 86 (320)
T PTZ00480 11 VDNIIERLLSVRGSKPGKNVNLTEAEVRGLCIKARDIFISQPILLELEAP----LKICGDVHGQYFDLLRLFEYGGYPPE 86 (320)
T ss_pred HHHHHHHHHhccccCccccCCCCHHHHHHHHHHHHHHHHhCCceEecCCC----eEEEeecccCHHHHHHHHHhcCCCCc
Confidence 555555554332 588999999999999999999999999866 99999999999999999999999865
Q ss_pred CCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhccccccc
Q 008730 321 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH 400 (556)
Q Consensus 321 ~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~ 400 (556)
++|||||||||||++|+||+.+++.+|+.+|++|++||||||.+.++..|||..|+..+|+..+|..+.++|..||++|
T Consensus 87 -~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~~~l~~~~~~~F~~LPlaA 165 (320)
T PTZ00480 87 -SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAA 165 (320)
T ss_pred -ceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcCHHHHHHHHHHHHhccHhh
Confidence 5699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCC
Q 008730 401 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLD 479 (556)
Q Consensus 401 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~g~~fg~~~~~~fl~~~~~~ 479 (556)
+|++++||||||| +|...++++|+.+.||.+.+..++++|+|||||.+. .+|.+++||.|+.||++++++||++||++
T Consensus 166 iI~~~i~cvHGGI-~p~~~~l~~i~~i~rp~~~~~~~~~~dllWSDP~~~~~~~~~s~RG~g~~FG~~~~~~Fl~~n~l~ 244 (320)
T PTZ00480 166 LIDEKILCMHGGL-SPELSNLEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFLKKHELD 244 (320)
T ss_pred eecCcEEEEcCCc-CcccCCHHHHhcccCCCCCCccchhhheeecCcccccCCCccCCCCCccccCHHHHHHHHHhCCCc
Confidence 9999999999999 899999999999999999999999999999999864 68999999999999999999999999999
Q ss_pred EEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCC
Q 008730 480 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP 540 (556)
Q Consensus 480 ~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~ 540 (556)
+||||||++++||++.++++|+||||||||||..+|+||+|.| +++++++|++|++.+..
T Consensus 245 ~IiR~Hq~v~~G~~~~~~~~~iTvFSa~~Y~~~~~N~ga~l~i-~~~~~~~~~~~~p~~~~ 304 (320)
T PTZ00480 245 LICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTI-DESLMCSFQILKPAEQG 304 (320)
T ss_pred EEEEcCccccCceEEeCCCcEEEEeCCcccCCCCCccEEEEEE-CCCCcEeEEEecCCccc
Confidence 9999999999999999999999999999999999999999999 88999999999876554
No 9
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=8.5e-71 Score=543.09 Aligned_cols=285 Identities=40% Similarity=0.692 Sum_probs=270.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeec
Q 008730 249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 328 (556)
Q Consensus 249 i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflG 328 (556)
++++++.+++++.++..++.+||++|.++|++||++++++.| ++||||||||+.+|.++|+..+.++ .++|||||
T Consensus 3 ~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~~~~i~~~----i~vvGDIHG~~~~L~~l~~~~~~~~-~~~~lfLG 77 (303)
T PTZ00239 3 IDRHIATLLNGGCLPERDLKLICERAKEIFLEESNVQPVRAP----VNVCGDIHGQFYDLQALFKEGGDIP-NANYIFIG 77 (303)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCC----EEEEEeCCCCHHHHHHHHHhcCCCC-CceEEEee
Confidence 677889999889999999999999999999999999999866 9999999999999999999998875 45699999
Q ss_pred ccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhH-HHHHHHHHHhcccccccccCCeEE
Q 008730 329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE-TFVELFAEVFCCLPLAHVLNQKVF 407 (556)
Q Consensus 329 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~lP~~~~i~~~~~ 407 (556)
||||||++|+||+.+++++|+.+|.+|++||||||.+.++..|||..|+..+|+. .+|+.+.++|+.||++++++++++
T Consensus 78 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~~~~~~~~~~f~~LPlaaii~~~i~ 157 (303)
T PTZ00239 78 DFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQIL 157 (303)
T ss_pred eEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcChhHHHHHHHHHHhCchheEEcCeEE
Confidence 9999999999999999999999999999999999999999999999999999974 789999999999999999999999
Q ss_pred EEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccc
Q 008730 408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEV 487 (556)
Q Consensus 408 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~ 487 (556)
|||||| +|...++++|+.++|+.+++.++.++|+|||||.+..+|.+++||.|+.||++++++||++||+++||||||+
T Consensus 158 cvHgGi-~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~ 236 (303)
T PTZ00239 158 CVHGGL-SPDMRTIDQIRTIDRKIEIPHEGPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKEFCRLNDLTLICRAHQL 236 (303)
T ss_pred EEcCcc-CcccccHhhhccccCCCCCCCCCCceeeEecCccccCCCccCCCCCccccCHHHHHHHHHHCCCcEEEEcChh
Confidence 999999 8999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred cccCceEecCC-eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCC
Q 008730 488 KDEGYEIEHDG-KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP 540 (556)
Q Consensus 488 ~~~G~~~~~~~-~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~ 540 (556)
+++||++.+++ +|+|||||||||+..+|+||+|.| +++++++|++|+++++.
T Consensus 237 ~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~~ail~i-~~~~~~~~~~~~~~~~~ 289 (303)
T PTZ00239 237 VMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCL-DENLQQTWKTFKEVPES 289 (303)
T ss_pred hccceEEEeCCCeEEEEECCCcccCCCCceEEEEEE-CCCCcEeeEEeeCCCcc
Confidence 99999987654 599999999999999999999999 88999999999998764
No 10
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=2.6e-70 Score=548.16 Aligned_cols=302 Identities=42% Similarity=0.760 Sum_probs=274.8
Q ss_pred CCHHHHHHHHHHhhcC----------CCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHH
Q 008730 244 ITLDFVKKMMDDFKNQ----------KCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE 313 (556)
Q Consensus 244 it~~~i~~~i~~~~~~----------~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~ 313 (556)
+|.++++.|+..+++. ..++..++.+||.+|.++|++||++++|+.+...+++||||||||+.+|.++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~ 86 (377)
T cd07418 7 LTNEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLE 86 (377)
T ss_pred cCHHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHH
Confidence 7999999999999776 347899999999999999999999999986655679999999999999999999
Q ss_pred hcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhH---HHHHHHH
Q 008730 314 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE---TFVELFA 390 (556)
Q Consensus 314 ~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~---~~~~~~~ 390 (556)
..|+++.++.|||||||||||++|+||+.+|+.+|+.+|++|++||||||.+.++..|||..|+..+|+. .+++.+.
T Consensus 87 ~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~~~~l~~~~~ 166 (377)
T cd07418 87 DAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCL 166 (377)
T ss_pred HhCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCchHHHHHHHHH
Confidence 9999876667999999999999999999999999999999999999999999999999999999999964 7999999
Q ss_pred HHhcccccccccCCeEEEEecccc--------------------------cCCCCChhhhhhcccC-CCCCCcc---chh
Q 008730 391 EVFCCLPLAHVLNQKVFVVHGGLF--------------------------SVDGVKLSDIKTIDRF-CEPPEEG---LMC 440 (556)
Q Consensus 391 ~~~~~lP~~~~i~~~~~~vHgGi~--------------------------~~~~~~~~~i~~~~r~-~~~~~~~---~~~ 440 (556)
++|++||+++++++++|||||||+ +|...++++|+.++|+ .+++..+ +++
T Consensus 167 ~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~~i~~ 246 (377)
T cd07418 167 GCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSNLIPG 246 (377)
T ss_pred HHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCccccce
Confidence 999999999999999999999994 2345689999999997 4666554 478
Q ss_pred hhhcCCCCCCCCCCcC-CCCCccccCHHHHHHHHHHCCCCEEEeeccc------------cccCceEecC---CeEEEEe
Q 008730 441 ELLWSDPQPLPGRGPS-KRGVGLSFGADVTKRFLQDNSLDLVVRSHEV------------KDEGYEIEHD---GKLITVF 504 (556)
Q Consensus 441 ~llw~dp~~~~~~~~~-~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~------------~~~G~~~~~~---~~~itvf 504 (556)
|+|||||....++.++ .||.|+.||++++++||++|++++||||||+ +++||++.++ ++|+|||
T Consensus 247 dlLWSDP~~~~g~~~~~~RG~g~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~~~~~liTvF 326 (377)
T cd07418 247 DVLWSDPSLTPGLSPNKQRGIGLLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVESGKLITLF 326 (377)
T ss_pred eeEeeCCccCCCCCccCCCCCccccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccCCCCcEEEEe
Confidence 9999999988887765 7999999999999999999999999999996 6899999887 9999999
Q ss_pred cCCCCC------CCCCCeEEEEEEecCC-CceeEEEEecC-CCCCCCcc
Q 008730 505 SAPNYC------DQMGNKGAFIRFEAPT-LKPNIVTFAAV-PHPDVKPM 545 (556)
Q Consensus 505 Sa~~y~------~~~~n~~a~~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 545 (556)
|||||| +.++|+||++.|+.++ ..++|++|+++ |+|...|.
T Consensus 327 Sa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (377)
T cd07418 327 SAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFEAVKPRPKANPY 375 (377)
T ss_pred cCCccccccccccccCcceEEEEEecCCCCCccceEeeccCCCCCCCcC
Confidence 999999 5789999999996655 58999999998 99998875
No 11
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=1.2e-69 Score=533.46 Aligned_cols=269 Identities=40% Similarity=0.777 Sum_probs=257.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHH
Q 008730 261 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV 340 (556)
Q Consensus 261 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~ 340 (556)
.++..++.+||.++.++|++||++++++.| ++||||||||+.+|.++|+..++++. ++|+|||||||||++|+||
T Consensus 24 ~i~~~~i~~l~~~~~~il~~e~~ll~i~~p----~~ViGDIHG~~~~L~~l~~~~~~~~~-~~~lfLGDyVDRG~~s~ev 98 (294)
T PTZ00244 24 LIREEDIRAVLTEVREIFMSQPMLLEIRPP----VRVCGDTHGQYYDLLRIFEKCGFPPY-SNYLFLGDYVDRGKHSVET 98 (294)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEeccCC----ceeeccCCCCHHHHHHHHHHcCCCCc-ccEEEeeeEecCCCCHHHH
Confidence 588999999999999999999999999876 99999999999999999999999764 4599999999999999999
Q ss_pred HHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCC
Q 008730 341 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK 420 (556)
Q Consensus 341 l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~ 420 (556)
+.+++++|+.+|.++++||||||.+.++..|||..++..+|+..+|..+.++|+.||++++++++++|||||+ +|...+
T Consensus 99 l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaaii~~~il~vHgGi-~p~~~~ 177 (294)
T PTZ00244 99 ITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYNIKLFKAFTDVFNTMPVCCVISEKIICMHGGL-SPDLTS 177 (294)
T ss_pred HHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhhHHHHHHHHHHHHhCchheEecCeeEEEcCCC-CchhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 888889
Q ss_pred hhhhhhcccCCCCCCccchhhhhcCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCe
Q 008730 421 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGK 499 (556)
Q Consensus 421 ~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~ 499 (556)
+++++.++|+.+.+..++++|+|||||... .+|.+++||.|+.||++++++||++||+++||||||++++||+++++++
T Consensus 178 l~~i~~i~rp~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~ 257 (294)
T PTZ00244 178 LASVNEIERPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGFFASRQ 257 (294)
T ss_pred HHHhhhhccccCCCccchhheeeecCcccccCCCCcCCCCCccccCHHHHHHHHHHcCCcEEEEcCccccCceEEcCCCe
Confidence 999999999999889999999999999864 6899999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 008730 500 LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 536 (556)
Q Consensus 500 ~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 536 (556)
|+||||||||||..+|+||+|.| +++++++|++|.+
T Consensus 258 ~iTvfSa~~Y~~~~~N~~a~l~i-~~~~~~~f~~~~~ 293 (294)
T PTZ00244 258 LVTVFSAPNYCGEFDNDAAVMNI-DDKLQCSFLIIPA 293 (294)
T ss_pred EEEEeCCccccCCCCceEEEEEE-CCCCcEeEEEeec
Confidence 99999999999999999999999 8899999998865
No 12
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=2.9e-69 Score=531.95 Aligned_cols=269 Identities=42% Similarity=0.830 Sum_probs=257.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHH
Q 008730 261 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV 340 (556)
Q Consensus 261 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~ 340 (556)
.++++++.+||+++.++|++||++++++.| ++||||||||+.+|.++|+..++++. ++|||||||||||++|+||
T Consensus 22 ~~~~~~i~~l~~~~~~il~~ep~~l~i~~~----i~viGDIHG~~~~L~~l~~~~~~~~~-~~~lfLGDyVDRG~~s~e~ 96 (293)
T cd07414 22 QLTEAEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE-SNYLFLGDYVDRGKQSLET 96 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEecCCc----eEEEEecCCCHHHHHHHHHhcCCCCc-ceEEEEeeEecCCCCcHHH
Confidence 588999999999999999999999999876 99999999999999999999999764 5699999999999999999
Q ss_pred HHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCC
Q 008730 341 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK 420 (556)
Q Consensus 341 l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~ 420 (556)
+.+++++|+.+|.++++||||||.+.++..|||..|+..+|+..+|..+.++|++||++++++++++|||||+ +|...+
T Consensus 97 i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaa~i~~~i~cvHgGi-~p~~~~ 175 (293)
T cd07414 97 ICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGL-SPDLQS 175 (293)
T ss_pred HHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhhHHHHHHHHHHHHHhHHHHhhCCcEEEEccCC-CcccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred hhhhhhcccCCCCCCccchhhhhcCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCe
Q 008730 421 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGK 499 (556)
Q Consensus 421 ~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~ 499 (556)
+++|+.++|+.+.+..++++|+|||||... .+|.+++||.|+.||++++++||++||+++||||||++++||++.++++
T Consensus 176 l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~ 255 (293)
T cd07414 176 MEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEFFAKRQ 255 (293)
T ss_pred HHHHhcccCCCCCCchhhHhhhhccCcccccCCCccCCCCcceecCHHHHHHHHHHcCCeEEEECCccccCeEEEeCCCc
Confidence 999999999998889999999999999864 6889999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 008730 500 LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 536 (556)
Q Consensus 500 ~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 536 (556)
|+||||||||||..+|+||+|.| +++++++|++|++
T Consensus 256 ~iTvfSa~~Y~~~~~N~~a~l~i-~~~~~~~~~~~~~ 291 (293)
T cd07414 256 LVTLFSAPNYCGEFDNAGAMMSV-DETLMCSFQILKP 291 (293)
T ss_pred EEEEecCCcccCCCCceEEEEEE-CCCCcEEEEEecC
Confidence 99999999999999999999999 8899999999874
No 13
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.4e-69 Score=536.62 Aligned_cols=270 Identities=41% Similarity=0.792 Sum_probs=261.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcC-CCCCCCCeeeecccccCCCChHH
Q 008730 261 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSVE 339 (556)
Q Consensus 261 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~-~~~~~~~~vflGD~vdrG~~s~e 339 (556)
.+++.++.++|..+.++|..+|++++++.| |.|+||||||+.||.++|...| +|+. .+|||||||||||++|+|
T Consensus 31 ~l~~~ei~~l~~~~~~if~~~~~l~e~~aP----V~i~GDiHGq~~DLlrlf~~~g~~pp~-~~ylFLGDYVDRG~~slE 105 (331)
T KOG0374|consen 31 PLSKSEIIKLCDKAREIFLSQPTLLELSAP----VKIVGDIHGQFGDLLRLFDLLGSFPPD-QNYVFLGDYVDRGKQSLE 105 (331)
T ss_pred eccHHHHHHHHHHHHHHhcCCCceeecCCC----EEEEccCcCCHHHHHHHHHhcCCCCCc-ccEEEecccccCCccceE
Confidence 388899999999999999999999999988 9999999999999999999999 7754 459999999999999999
Q ss_pred HHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhh-HHHHHHHHHHhcccccccccCCeEEEEecccccCCC
Q 008730 340 VILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDG 418 (556)
Q Consensus 340 ~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~ 418 (556)
|+.+|+++|++||++|++||||||.+.++..|||++||.++|+ ..+|+.|++.|+.||++++|+++|+|+|||+ ||..
T Consensus 106 ~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~~~~w~~F~~~f~~mp~~a~i~~kI~CmhGGl-sp~l 184 (331)
T KOG0374|consen 106 TICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGEIKLWKAFNDAFNCLPLAALIDGKILCMHGGL-SPHL 184 (331)
T ss_pred EeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcchHHHHHHHHHHHhhCchhheecceEEEecCCC-Chhh
Confidence 9999999999999999999999999999999999999999999 6999999999999999999999999999999 9999
Q ss_pred CChhhhhhcccCCCCCCccchhhhhcCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecC
Q 008730 419 VKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHD 497 (556)
Q Consensus 419 ~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~ 497 (556)
.++++|+.|.||.+.++.++++||+||||... .+|.++.||.++.||++++++||+++++++||||||++++||+++.+
T Consensus 185 ~~~~~i~~i~rp~~~~~~gll~DLlWsdp~~~~~g~~~n~Rg~s~~fg~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~ 264 (331)
T KOG0374|consen 185 KSLDQIRAIPRPTDSPDKGLLCDLLWSDPDDDVPGWEENDRGVSFTFGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAG 264 (331)
T ss_pred cChHHHhhccCCcCCCccceeeeeeecCCCCCCCCcccCCCceeeEecHHHHHHHHHHhCcceEEEcCccccccceEecC
Confidence 99999999999999999999999999999876 79999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecC
Q 008730 498 GKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAV 537 (556)
Q Consensus 498 ~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~ 537 (556)
++++||||||+|||.+.|.||+|.| ++++.++|..+.+.
T Consensus 265 r~lvTIFSAP~Ycg~~~n~gavm~V-d~~l~~sf~~l~p~ 303 (331)
T KOG0374|consen 265 RKLVTIFSAPNYCGEFDNAGAVMRV-DKNLKCSFVILRPE 303 (331)
T ss_pred ceEEEEecCchhccccCCceEEEEE-CCCCeEEEEEeccc
Confidence 9999999999999999999999999 99999999999884
No 14
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=2.8e-70 Score=518.47 Aligned_cols=288 Identities=41% Similarity=0.751 Sum_probs=270.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeec
Q 008730 249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 328 (556)
Q Consensus 249 i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflG 328 (556)
.+-+-+++...++++++..+.++.++..+|++|+++++|+.| |.|+|||||||.||+++|+..|-|. +.+|+|||
T Consensus 48 ~~~Lr~Hf~~EGrl~ee~alrIi~~~a~llr~Eknmi~v~AP----iTVCGDIHGQf~DLmKLFEVGG~PA-~t~YLFLG 122 (517)
T KOG0375|consen 48 HDVLRNHFIKEGRLEEEQALRIINEGAALLRQEKNMIEVEAP----ITVCGDIHGQFFDLMKLFEVGGSPA-NTRYLFLG 122 (517)
T ss_pred hHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCCceEeccCC----eeEecccchHHHHHHHHHHccCCcc-cceeEeec
Confidence 445677888888999999999999999999999999999998 9999999999999999999988765 55699999
Q ss_pred ccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEE
Q 008730 329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV 408 (556)
Q Consensus 329 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~ 408 (556)
||||||.+|+||+.+|.+||+.||..+++||||||++.++.++.|..||..||++++|+.+.+.|+.||++|+.+++++|
T Consensus 123 DYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYse~vYdaCmesFd~LPLAAlmNqQflC 202 (517)
T KOG0375|consen 123 DYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMESFDCLPLAALMNQQFLC 202 (517)
T ss_pred cccccceeeeehHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhccHHHHHHHHHHhccchHHHHhcCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCC--------CCcCCCCCccccCHHHHHHHHHHCCCCE
Q 008730 409 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG--------RGPSKRGVGLSFGADVTKRFLQDNSLDL 480 (556)
Q Consensus 409 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~--------~~~~~rg~g~~fg~~~~~~fl~~~~~~~ 480 (556)
||||+ ||.+.+++||++++|+.+||..+.+||||||||.+..| .+++.||++|.|...++++||+.||+--
T Consensus 203 VHGGl-SPEi~tl~DIr~l~RF~EpPa~GpmCDLLWsDPlEdfgnek~~e~f~hNsvRGCSyfysy~A~C~FLq~nnLLS 281 (517)
T KOG0375|consen 203 VHGGL-SPEIHTLDDIRKLDRFKEPPAFGPMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCSYFYSYPAVCEFLQNNNLLS 281 (517)
T ss_pred ecCCC-CcccccHHHHHhhhhccCCCccCcchhhhccChhhhccccccccccccCccccccceechHHHHHHHHhCCchh
Confidence 99999 99999999999999999999999999999999987543 3577899999999999999999999999
Q ss_pred EEeeccccccCceEecCC------eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCc
Q 008730 481 VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKP 544 (556)
Q Consensus 481 iir~H~~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (556)
|||+||.++.||..+... .+|||||||||-+.++|++|||.-+++ ...|.||..+|||.|.|
T Consensus 282 IiRAHEAQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYEnN--VMNIRQFncSPHPYWLP 349 (517)
T KOG0375|consen 282 IIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENN--VMNIRQFNCSPHPYWLP 349 (517)
T ss_pred hhhhhhhhhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhhcc--cceeeccCCCCCCcccc
Confidence 999999999999987754 489999999999999999999999444 45788999999999988
No 15
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=1.4e-67 Score=516.91 Aligned_cols=267 Identities=49% Similarity=0.901 Sum_probs=254.8
Q ss_pred CHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHH
Q 008730 263 HKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVIL 342 (556)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~ 342 (556)
+++++.+||+++.++|++||++++++.| ++||||||||+.+|.++|+..+.++ .++|||||||||||++|+||+.
T Consensus 2 ~~~~i~~l~~~~~~il~~e~~~~~i~~~----i~vvGDiHG~~~~l~~ll~~~~~~~-~~~~vfLGD~VDrG~~s~e~l~ 76 (271)
T smart00156 2 YAEEILELLREVKEIFRQEPNLVEVSAP----VTVCGDIHGQFDDLLRLFDLNGPPP-DTNYVFLGDYVDRGPFSIEVIL 76 (271)
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEeCCC----EEEEEeCcCCHHHHHHHHHHcCCCC-CceEEEeCCccCCCCChHHHHH
Confidence 5678999999999999999999999865 9999999999999999999999865 5679999999999999999999
Q ss_pred HHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChh
Q 008730 343 TLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLS 422 (556)
Q Consensus 343 ~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~ 422 (556)
+++.+|+.+|++|++||||||.+.++..|||..|+..+|+..+|+.+.++|++||++++++++++|||||+ +|...+++
T Consensus 77 ~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi-~~~~~~l~ 155 (271)
T smart00156 77 LLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYGEEIYEKFQEAFSWLPLAALIDNKILCMHGGL-SPDLTTLD 155 (271)
T ss_pred HHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcCHHHHHHHHHHHhhChhheEEcCeEEEEecCC-CCccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 88999999
Q ss_pred hhhhcccCCCCCCccchhhhhcCCCC-CCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEE
Q 008730 423 DIKTIDRFCEPPEEGLMCELLWSDPQ-PLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLI 501 (556)
Q Consensus 423 ~i~~~~r~~~~~~~~~~~~llw~dp~-~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~i 501 (556)
+|+.++|+.+.+.++.++|+|||||. ...+|.+++||.|+.||++++++||++||+++||||||++++||++.++++|+
T Consensus 156 ~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~ 235 (271)
T smart00156 156 DIRKLKRPQEPPDEGLLIDLLWSDPDQPVDGFQPSIRGASYYFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFHDRKLV 235 (271)
T ss_pred HHhcccCCCCCCchhhhhheeecCCCcccCCCccCCCCCccccCHHHHHHHHHHCCCeEEEecCcccCCcEEEecCCcEE
Confidence 99999999988899999999999995 45689999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 008730 502 TVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 536 (556)
Q Consensus 502 tvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 536 (556)
|||||||||+..+|+||++.| +++.+++|.+|++
T Consensus 236 TvfSa~~y~~~~~n~~a~~~i-~~~~~~~~~~~~~ 269 (271)
T smart00156 236 TIFSAPNYCGRFGNKAAVLKV-DKDLKLSFEQFKP 269 (271)
T ss_pred EEECCcccccCCCceEEEEEE-CCCCcEEEEEecC
Confidence 999999999989999999999 8899999999975
No 16
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=8.5e-65 Score=506.33 Aligned_cols=270 Identities=36% Similarity=0.643 Sum_probs=250.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCC-------CCCeeeecccccC
Q 008730 261 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE-------ENPYLFNGDFVDR 333 (556)
Q Consensus 261 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~-------~~~~vflGD~vdr 333 (556)
.++.+++..||+++.++|++||++++++.| ++||||||||+++|.++|+..++++. +.+||||||||||
T Consensus 20 ~~~~~~i~~l~~~~~~il~~e~~~~~i~~~----~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDR 95 (311)
T cd07419 20 FFNWNEILELCDAAEDIFKQEPMVLRLRAP----IKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDR 95 (311)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEeeCCC----EEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCC
Confidence 478899999999999999999999999866 99999999999999999999998754 2469999999999
Q ss_pred CCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhH------HHHHHHHHHhcccccccccCCeEE
Q 008730 334 GSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE------TFVELFAEVFCCLPLAHVLNQKVF 407 (556)
Q Consensus 334 G~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~lP~~~~i~~~~~ 407 (556)
|++|+||+.+|+++++.+|++|++||||||.+.++..|||..++..+++. .+|..+.++|++||++++++++++
T Consensus 96 Gp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~f~~LPl~avi~~~~l 175 (311)
T cd07419 96 GSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKIL 175 (311)
T ss_pred CCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHHHHhCchhheecccEE
Confidence 99999999999999999999999999999999999999999999998864 689999999999999999999999
Q ss_pred EEecccccCCCCChhhhhhcccCC-CCCCccchhhhhcCCCCCC---CCCCcCC---CCCc--cccCHHHHHHHHHHCCC
Q 008730 408 VVHGGLFSVDGVKLSDIKTIDRFC-EPPEEGLMCELLWSDPQPL---PGRGPSK---RGVG--LSFGADVTKRFLQDNSL 478 (556)
Q Consensus 408 ~vHgGi~~~~~~~~~~i~~~~r~~-~~~~~~~~~~llw~dp~~~---~~~~~~~---rg~g--~~fg~~~~~~fl~~~~~ 478 (556)
|||||| +|...++++|+.+.|+. ..+..+.++|++||||... .++.+++ ||.| +.||++++++||++||+
T Consensus 176 ~vHgGi-~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~fg~~~~~~Fl~~n~l 254 (311)
T cd07419 176 CMHGGI-GRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDL 254 (311)
T ss_pred EEccCC-CCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeECHHHHHHHHHHCCC
Confidence 999999 89999999999999996 5566778999999999864 3666666 9999 69999999999999999
Q ss_pred CEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 008730 479 DLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 536 (556)
Q Consensus 479 ~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 536 (556)
++||||||++++||++.++++|+|||||||||+..+|.||++.| ++++++++.++++
T Consensus 255 ~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i-~~~~~~~~~~~~~ 311 (311)
T cd07419 255 QMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVL-GRDLTIIPKLIHP 311 (311)
T ss_pred eEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEE-CCCCcEeEEEeCC
Confidence 99999999999999999999999999999999999999999999 8899999988864
No 17
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-66 Score=473.19 Aligned_cols=287 Identities=38% Similarity=0.689 Sum_probs=275.4
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeee
Q 008730 247 DFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLF 326 (556)
Q Consensus 247 ~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vf 326 (556)
.+++..++++...+.++++.+..+|..++++|.+++++..+..| ++|+||+||||++|.++|+..|..+.. .|+|
T Consensus 18 ~~vd~~ie~L~~ck~lse~~v~~lc~~a~~~L~~e~nV~~v~~p----vtvcGDvHGqf~dl~ELfkiGG~~pdt-nylf 92 (319)
T KOG0371|consen 18 LDVDPWIEQLYKCKPLSEVDVSSLCLLAKEILDKEENVQPVNCP----VTVCGDVHGQFHDLIELFKIGGLAPDT-NYLF 92 (319)
T ss_pred cccccchHHHHhcCCCccccchhHHHHHHHHHhccccccccccc----eEEecCcchhHHHHHHHHHccCCCCCc-ceee
Confidence 44778899999999999999999999999999999999999987 999999999999999999887777655 5999
Q ss_pred ecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhh-HHHHHHHHHHhcccccccccCCe
Q 008730 327 NGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQK 405 (556)
Q Consensus 327 lGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~lP~~~~i~~~ 405 (556)
+|||||||++|+|++.+|.++|++||++|.+||||||.+.++..|||++||.+||+ ..+|+.|.+.|+.+|+.+.|+++
T Consensus 93 mGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~anvw~~Ftdlfdy~P~tali~~~ 172 (319)
T KOG0371|consen 93 MGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESK 172 (319)
T ss_pred eeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccccchHHhhhhhhccchHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999995 58999999999999999999999
Q ss_pred EEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeec
Q 008730 406 VFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSH 485 (556)
Q Consensus 406 ~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H 485 (556)
|||.|||+ ||.+.+++.++.++|..+.|.++.+||||||||.+..||..++||.|+.||.+..+.|-.+||+++|-|+|
T Consensus 173 ifc~HGgL-spsi~tld~~r~~dr~~evphegpmcDlLwsdpddr~gwg~sprgag~tfg~di~~~fn~~n~lslisRah 251 (319)
T KOG0371|consen 173 IFCLHGGL-SPSIDTLDLIRLLDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHKNGLSLISRAH 251 (319)
T ss_pred eeeccCCc-CcccchHHHHHHHHHhhcccCCCChhheeccCcccCCCCCCCCCCCCcccchhhHHHhhccCCchHhHHHH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCC
Q 008730 486 EVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP 540 (556)
Q Consensus 486 ~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~ 540 (556)
|.+++||.|.+...++|||||||||...+|.+|++.+ +++....|.||+++|.+
T Consensus 252 qlvm~g~nW~~~~~~vtiFSapnycYrcgn~a~i~e~-d~~~~~~f~q~~psp~k 305 (319)
T KOG0371|consen 252 QLVMEGYNWYHLWNVVTIFSAPNYCYRCGNQAAIMER-DDTKNYDFLQFDPSPRK 305 (319)
T ss_pred HHHhcccceeeecceeEEccCCchhhccccHHHHhhh-hhccCcceEEecCCccc
Confidence 9999999999999999999999999999999999999 89999999999997764
No 18
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-66 Score=499.87 Aligned_cols=317 Identities=39% Similarity=0.735 Sum_probs=293.0
Q ss_pred cccccCCCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCH
Q 008730 226 LELEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQF 305 (556)
Q Consensus 226 ~~~~~~~~~~g~~l~~~~it~~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~ 305 (556)
.+++++.+|+||+|+.+ ++...++.|++.|+.+++++..||+.++.+++++|+..|++-+|+...+..|.||||+||.+
T Consensus 99 ~sidv~d~y~Gp~ls~P-l~~~~i~~lieaFk~kq~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGkl 177 (631)
T KOG0377|consen 99 TSIDVPDSYNGPKLSLP-LRKNHIDLLIEAFKKKQRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKL 177 (631)
T ss_pred cceecCccCCCcccccC-cCchHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccc
Confidence 46789999999999997 99999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhh---h
Q 008730 306 YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL---S 382 (556)
Q Consensus 306 ~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~---~ 382 (556)
+||.-+|-+.|+|+..+.|||.||+||||.+|+|||..|+++-+.||..+|+-|||||..++|..|||-.|+..|| +
T Consensus 178 DDL~~I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~~ 257 (631)
T KOG0377|consen 178 DDLLVILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRHG 257 (631)
T ss_pred cceEEEEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred HHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCC-----CCC-----------------Cccchh
Q 008730 383 ETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC-----EPP-----------------EEGLMC 440 (556)
Q Consensus 383 ~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~-----~~~-----------------~~~~~~ 440 (556)
.++.+.+.++|++||++.+|+.+||+||||| | +.++++-+.+|+|.. .|| +...+.
T Consensus 258 k~Ilr~leevy~WLPi~tiid~~ilvvHGGi-S-d~Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~ 335 (631)
T KOG0377|consen 258 KRILRFLEEVYRWLPIGTIIDSRILVVHGGI-S-DSTDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIF 335 (631)
T ss_pred cHHHHHHHHHHHhcchhhhcccceEEEecCc-c-cchhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHH
Confidence 7899999999999999999999999999999 4 567788888887751 122 123567
Q ss_pred hhhcCCCCCCCCCCc-CCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEE
Q 008730 441 ELLWSDPQPLPGRGP-SKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAF 519 (556)
Q Consensus 441 ~llw~dp~~~~~~~~-~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~ 519 (556)
|++||||....|..| --||.|++||+|++..||++.+++++||+|||.++||+++||+||+|||||+||.....|+||+
T Consensus 336 DImWSDP~~~~GC~pNt~RGgG~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNrGAY 415 (631)
T KOG0377|consen 336 DIMWSDPQATMGCVPNTLRGGGCYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNRGAY 415 (631)
T ss_pred HHHhcCcccccCCCcccccCCcceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCCceE
Confidence 899999998887554 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeEEEEecCCCCCCCccc
Q 008730 520 IRFEAPTLKPNIVTFAAVPHPDVKPMA 546 (556)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (556)
+.+ ++.+.|.|+||.+....+..|++
T Consensus 416 ikl-~~~~~PhfvQY~a~k~t~~~tlr 441 (631)
T KOG0377|consen 416 IKL-GNQLTPHFVQYQAAKQTKRLTLR 441 (631)
T ss_pred EEe-CCCCCchHHHHHhhhhhhhhhHH
Confidence 999 99999999999987766666654
No 19
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=100.00 E-value=8.2e-34 Score=274.41 Aligned_cols=213 Identities=49% Similarity=0.758 Sum_probs=174.6
Q ss_pred eEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchh
Q 008730 296 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEG 375 (556)
Q Consensus 296 ~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~ 375 (556)
+|||||||++++|.++++..+.. ..+++||+|||||||+.+.+|+.+++.++.. |.++++|+||||.+.+....++..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~-~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~~~~~~ 78 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFP-PNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFLYGFYD 78 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCC-CCCEEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhhcCCcc
Confidence 58999999999999999999885 4567999999999999999999999999877 899999999999999887766554
Q ss_pred hH---------HhhhhHHHHHHHHHHhcccccccccCC-eEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcC
Q 008730 376 EV---------RSKLSETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWS 445 (556)
Q Consensus 376 ~~---------~~~~~~~~~~~~~~~~~~lP~~~~i~~-~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~ 445 (556)
+. .......++..+.+++..||+++.++. +++|||||+ +|......... ..+.+....+++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~-~~~~~~~~~~~------~~~~~~~~~~~lw~ 151 (225)
T cd00144 79 EDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGL-SPGLPLEEQIK------EEPEDQLPEDLLWS 151 (225)
T ss_pred hhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCC-CCccchHHhhh------cCcccccceeeeec
Confidence 32 223356788888999999999999886 999999999 66544333332 23345567899999
Q ss_pred CCCCCCC-CCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEE
Q 008730 446 DPQPLPG-RGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIR 521 (556)
Q Consensus 446 dp~~~~~-~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~ 521 (556)
+|..... ...+.|+. |++.+..|++.++.+.|||||+++..|+.+..+++++||+|++.|++..+|..+++.
T Consensus 152 r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~l~~~~ 224 (225)
T cd00144 152 DPLELPGGFGSSRRGG----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNKLAALV 224 (225)
T ss_pred CCCCCCCCCcCCCCCC----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCccEEEEe
Confidence 9976543 22333333 999999999999999999999999999877788999999999999877788777654
No 20
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.93 E-value=8.6e-26 Score=213.89 Aligned_cols=176 Identities=20% Similarity=0.294 Sum_probs=130.3
Q ss_pred eEeccCCCCHHHHHHHHHhcCC-------CCCCCCeeeecccccCCCChHHHHHHHHhcccc---CCCeEEEeccccccc
Q 008730 296 TVCGDVHGQFYDLLNIFELNGL-------PSEENPYLFNGDFVDRGSFSVEVILTLFAFKCM---CPSAIYLSRGNHESK 365 (556)
Q Consensus 296 ~vigDiHG~~~~l~~~l~~~~~-------~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~---~p~~v~~lrGNHE~~ 365 (556)
+||||||||++.|.++|+..++ ....+.+||+||+||||+++.+|+.+|+.++.. .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 5899999999999999998875 235678999999999999999999999999743 467899999999999
Q ss_pred ccccccCchh-hHHhhhhH------HH---HHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCC
Q 008730 366 SMNKIYGFEG-EVRSKLSE------TF---VELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPE 435 (556)
Q Consensus 366 ~~~~~~g~~~-~~~~~~~~------~~---~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~ 435 (556)
.+...+.+.. ........ .. ...+.+|++.+|+...++ +++|||||+ +
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~-~-------------------- 138 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGL-G-------------------- 138 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCc-H--------------------
Confidence 9875543321 11111111 11 123478999999999877 688899998 2
Q ss_pred ccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecC
Q 008730 436 EGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSA 506 (556)
Q Consensus 436 ~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa 506 (556)
.+|++.-... ... ..-|...+.++++.++.++||+||++++.|....++|++++|.+.
T Consensus 139 ------~~w~r~y~~~---~~~----~~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g 196 (208)
T cd07425 139 ------PLWYRGYSKE---TSD----KECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVG 196 (208)
T ss_pred ------HHHhhHhhhh---hhh----ccchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCC
Confidence 2343210000 000 001235788899999999999999999988877899999999974
No 21
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.93 E-value=2e-25 Score=217.19 Aligned_cols=122 Identities=25% Similarity=0.459 Sum_probs=97.4
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCC--------CCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccc
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLP--------SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHES 364 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~--------~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~ 364 (556)
++++||||||||++.|.++|+++++. +..+++|||||||||||+|.|||.+++.+. .+.++++||||||.
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~ 78 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCN 78 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHH
Confidence 36899999999999999999998874 346789999999999999999999999885 45689999999999
Q ss_pred cccccccCc-------hhhHHhhh-------hHHHHHHHHHHhcccccccccC-CeEEEEecccccCC
Q 008730 365 KSMNKIYGF-------EGEVRSKL-------SETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVD 417 (556)
Q Consensus 365 ~~~~~~~g~-------~~~~~~~~-------~~~~~~~~~~~~~~lP~~~~i~-~~~~~vHgGi~~~~ 417 (556)
+++....+- ..+....| ...+.+.+.+|++.+|++..++ ++++|||||+ .|.
T Consensus 79 ~~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~-~~~ 145 (245)
T PRK13625 79 KLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGI-RQD 145 (245)
T ss_pred HHHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCC-ChH
Confidence 887654321 11222223 1346778899999999998773 5799999999 443
No 22
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.91 E-value=1e-23 Score=201.98 Aligned_cols=115 Identities=24% Similarity=0.270 Sum_probs=91.1
Q ss_pred eEeccCCCCHHHHHHHHHhcCCC-------CCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccc
Q 008730 296 TVCGDVHGQFYDLLNIFELNGLP-------SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 368 (556)
Q Consensus 296 ~vigDiHG~~~~l~~~l~~~~~~-------~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~ 368 (556)
+||||||||++.|.++|+++++. +..+++|||||||||||+|.+||++|+.+.. +.++++|+||||.+++.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~--~~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVD--AGHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhc--CCCEEEEEccCcHHHHH
Confidence 69999999999999999998875 2356899999999999999999999999863 45899999999998875
Q ss_pred cccCc------------h-----hhHHhhhh--HHHHHHHHHHhcccccccccCCeEEEEeccc
Q 008730 369 KIYGF------------E-----GEVRSKLS--ETFVELFAEVFCCLPLAHVLNQKVFVVHGGL 413 (556)
Q Consensus 369 ~~~g~------------~-----~~~~~~~~--~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi 413 (556)
...+- . .+....+. .+..+.+.+||+.||+....+ +++|||||+
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lP~~~~~~-~~~~VHAg~ 142 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFREHSEEHKDWLEWFKTLPLFLDLG-GVRVVHACW 142 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhccchhHHHHHHHHhcCCcEEEEC-CEEEEECCc
Confidence 43221 0 01122221 244577889999999998865 799999998
No 23
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.90 E-value=3.2e-23 Score=203.04 Aligned_cols=216 Identities=19% Similarity=0.274 Sum_probs=140.4
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccC
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 372 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g 372 (556)
++++||||||||++.|.++++++++.+..+.+||+||+|||||+|.||+.++..+ +.++++|+||||.+.+...+|
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~~~~g 76 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLAVAAG 76 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHHhhcC
Confidence 4689999999999999999999988666788999999999999999999999887 357899999999988877666
Q ss_pred chhh----HHhhh-hHHHHHHHHHHhccccccccc-CCeEEEEecccccCCCCChhhhhhccc----CC-CCCCccchhh
Q 008730 373 FEGE----VRSKL-SETFVELFAEVFCCLPLAHVL-NQKVFVVHGGLFSVDGVKLSDIKTIDR----FC-EPPEEGLMCE 441 (556)
Q Consensus 373 ~~~~----~~~~~-~~~~~~~~~~~~~~lP~~~~i-~~~~~~vHgGi~~~~~~~~~~i~~~~r----~~-~~~~~~~~~~ 441 (556)
+... ....+ .....+.+.+|++.+|+...+ ++++++||||+ +|.. ++++.....+ .. .+....++..
T Consensus 77 ~~~~~~~~~l~~~l~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi-~p~~-~~~~~~~~a~eve~~l~~~~~~~~~~~ 154 (275)
T PRK00166 77 IKRNKKKDTLDPILEAPDRDELLDWLRHQPLLHVDEELGLVMVHAGI-PPQW-DLATALALAREVEAVLRSDDYRDFLAN 154 (275)
T ss_pred CccccchhHHHHHHccccHHHHHHHHHCCCcEEEECCCCEEEEccCC-CCCC-CHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4311 11111 122345578999999998876 56899999999 5553 3333222211 11 1112234555
Q ss_pred hhcCCCCCCCCCCcCCCCCc-cccCHHHHH--HHHHH-----------------------------CCCCEEEeeccccc
Q 008730 442 LLWSDPQPLPGRGPSKRGVG-LSFGADVTK--RFLQD-----------------------------NSLDLVVRSHEVKD 489 (556)
Q Consensus 442 llw~dp~~~~~~~~~~rg~g-~~fg~~~~~--~fl~~-----------------------------~~~~~iir~H~~~~ 489 (556)
+.|+.|. .|.+.-.|.. ..|.-.++. +||.. ..-..||-||....
T Consensus 155 my~~~p~---~W~~~l~~~~r~r~~~n~~trmR~~~~~g~l~~~~k~~~~~~~~~~~pWf~~~~~~~~~~~i~fGHwa~l 231 (275)
T PRK00166 155 MYGNEPD---RWSPDLTGLERLRYIINAFTRMRFCTPDGRLDFKCKGPPDEAPAGLKPWFEVPGRKTRDYTIVFGHWAAL 231 (275)
T ss_pred hcCCCcC---ccCcccCchHHHHHHHHHHhhhhcccCCCceeecccCCcccCCcCCCCCccCcCccCCCCeEEEecCccc
Confidence 5565563 1222222221 111111100 01111 11247999999987
Q ss_pred cCceEecCCeEEEEecCCCCCCCCCCeEEEEEEe
Q 008730 490 EGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE 523 (556)
Q Consensus 490 ~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~ 523 (556)
.|... ...++.+-|.--+ +++=..+.++
T Consensus 232 ~G~~~--~~~~~~LDtGcvw----gg~Lta~~l~ 259 (275)
T PRK00166 232 EGLTT--PPNIIALDTGCVW----GGKLTALRLE 259 (275)
T ss_pred CCccC--CCCeEEeeccccc----CCeEEEEEeC
Confidence 78865 4568888877643 4455567783
No 24
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.90 E-value=4.7e-24 Score=206.60 Aligned_cols=147 Identities=18% Similarity=0.277 Sum_probs=108.8
Q ss_pred ceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCch
Q 008730 295 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFE 374 (556)
Q Consensus 295 i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~ 374 (556)
++||||||||++.|+++|+++++.+..+++||+||||||||+|.||+.+|+.++ +++++|+||||.+.+...+|+.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~~~g~~ 76 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAVAAGIK 76 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHHhcCcc
Confidence 589999999999999999999987777889999999999999999999999986 5899999999999887766643
Q ss_pred hh----HHhh-hhHHHHHHHHHHhcccccccccCC-eEEEEecccccCCCCChhhhhhcccC-----CCCCCccchhhhh
Q 008730 375 GE----VRSK-LSETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTIDRF-----CEPPEEGLMCELL 443 (556)
Q Consensus 375 ~~----~~~~-~~~~~~~~~~~~~~~lP~~~~i~~-~~~~vHgGi~~~~~~~~~~i~~~~r~-----~~~~~~~~~~~ll 443 (556)
.. .... ......+.+.+|++++|+...+++ ++++||||| +|.. ++.+.....+. ..+....++..+.
T Consensus 77 ~~~~~~t~~~~l~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi-~p~w-~~~~~~~~a~eve~~l~~~~~~~~~~~my 154 (257)
T cd07422 77 KPKKKDTLDDILNAPDRDELLDWLRHQPLLHRDPELGILMVHAGI-PPQW-SIEQALKLAREVEAALRGPNYREFLKNMY 154 (257)
T ss_pred ccccHhHHHHHHhccchHHHHHHHHhCCCEEEECCccEEEEccCC-CCCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHhh
Confidence 11 1111 112233567899999999998764 799999999 5654 44443333222 1122233445555
Q ss_pred cCCC
Q 008730 444 WSDP 447 (556)
Q Consensus 444 w~dp 447 (556)
|+.|
T Consensus 155 ~~~p 158 (257)
T cd07422 155 GNEP 158 (257)
T ss_pred CCCC
Confidence 5555
No 25
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.90 E-value=5.3e-23 Score=199.27 Aligned_cols=119 Identities=34% Similarity=0.524 Sum_probs=95.9
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCC---------CCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccc
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSE---------ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE 363 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~---------~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE 363 (556)
+||.||||||||+..|.++|+++++.+. .+++|||||||||||+|.||+++|+.++. +.++++||||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~--~~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVA--AGAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhh--CCcEEEEECCcH
Confidence 3699999999999999999999987632 46899999999999999999999999863 357999999999
Q ss_pred ccccccccC--------chhhHHhhhh---HHHHHHHHHHhcccccccccC-CeEEEEecccc
Q 008730 364 SKSMNKIYG--------FEGEVRSKLS---ETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLF 414 (556)
Q Consensus 364 ~~~~~~~~g--------~~~~~~~~~~---~~~~~~~~~~~~~lP~~~~i~-~~~~~vHgGi~ 414 (556)
.++++...+ +. ++...+. ..+.+.+.+||+.||+...++ ++++|||||++
T Consensus 79 ~~l~~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~ 140 (234)
T cd07423 79 NKLYRKLQGRNVKITHGLE-ETVAQLEAESEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIK 140 (234)
T ss_pred HHHHHHhcCCCccccCccc-chHHHHhhccHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCC
Confidence 988764322 22 2233332 456678889999999988765 47999999983
No 26
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.90 E-value=1.1e-23 Score=203.65 Aligned_cols=127 Identities=22% Similarity=0.334 Sum_probs=102.5
Q ss_pred cceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCc
Q 008730 294 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 373 (556)
Q Consensus 294 ~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~ 373 (556)
+++||||||||++.|.++|+++++.+..++++|+||+|||||+|+||+.++..+. +++++|+||||.+.+...+|+
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~~~~g~ 77 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLAVFAGI 77 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHHHhcCC
Confidence 5899999999999999999999988778889999999999999999999998874 567899999999999887775
Q ss_pred h-----hhHHhhhhHHHHHHHHHHhcccccccccC-CeEEEEecccccCCCCChhhhhh
Q 008730 374 E-----GEVRSKLSETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVDGVKLSDIKT 426 (556)
Q Consensus 374 ~-----~~~~~~~~~~~~~~~~~~~~~lP~~~~i~-~~~~~vHgGi~~~~~~~~~~i~~ 426 (556)
. +....-+.......+.+|++++|+..... .++++||||| +|.. ++++...
T Consensus 78 ~~~~~~d~l~~~l~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi-~P~w-~l~~a~~ 134 (279)
T TIGR00668 78 SRNKPKDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHAGI-TPQW-DLQTAKE 134 (279)
T ss_pred CccCchHHHHHHHHccCHHHHHHHHHcCCcEEEeCCCCEEEEecCC-CCCC-cHHHHHH
Confidence 2 12222223345567889999999997653 4699999999 6654 4555443
No 27
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.89 E-value=5.1e-23 Score=196.97 Aligned_cols=124 Identities=22% Similarity=0.296 Sum_probs=95.0
Q ss_pred eeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccc
Q 008730 285 VDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHES 364 (556)
Q Consensus 285 ~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~ 364 (556)
..++....++++||||||||++.|+++|+.+++.+..+++|||||+|||||+|.|||++|... +++.|+||||.
T Consensus 9 ~~~~~~~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~------~~~~v~GNHE~ 82 (218)
T PRK11439 9 QRIAGHQWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEH------WVRAVRGNHEQ 82 (218)
T ss_pred ecccCCCCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHcC------CceEeeCchHH
Confidence 345554456899999999999999999999988766788999999999999999999999652 57789999999
Q ss_pred cccccccCch--------hhHHhhhh---HHHHHHHHHHhccccccccc---CCeEEEEecccc
Q 008730 365 KSMNKIYGFE--------GEVRSKLS---ETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLF 414 (556)
Q Consensus 365 ~~~~~~~g~~--------~~~~~~~~---~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~ 414 (556)
+++....+-. .++..... .+.+..+.+|++.||+...+ ++++++||||+|
T Consensus 83 ~~l~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p 146 (218)
T PRK11439 83 MALDALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP 146 (218)
T ss_pred HHHHHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence 8886542211 11111111 23455667899999999765 357999999984
No 28
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.89 E-value=8.6e-23 Score=196.94 Aligned_cols=197 Identities=20% Similarity=0.197 Sum_probs=129.0
Q ss_pred cceEeccCCCCHHHHHHHHHhcCCC-----CCCCCeeeecccccCCCChHHHHHHHHhccccCCC-eEEEeccccccccc
Q 008730 294 HFTVCGDVHGQFYDLLNIFELNGLP-----SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPS-AIYLSRGNHESKSM 367 (556)
Q Consensus 294 ~i~vigDiHG~~~~l~~~l~~~~~~-----~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~-~v~~lrGNHE~~~~ 367 (556)
++++||||||+++.|.++|+.+... ...+.+|||||||||||+|.+|+.+|+.++..+|. ++++|+||||.+++
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 5999999999999999999876422 23456999999999999999999999999988875 68899999997765
Q ss_pred ccccC---------c------------------------------------------------------hhhHHhhhh--
Q 008730 368 NKIYG---------F------------------------------------------------------EGEVRSKLS-- 382 (556)
Q Consensus 368 ~~~~g---------~------------------------------------------------------~~~~~~~~~-- 382 (556)
..... | ..+....|+
T Consensus 83 ~fL~~~p~~~d~~~f~~~w~~~~~~~e~~~~~~~~~~~~~h~~g~~W~~~~~~~~~~~~~~~~~~~~~gg~~Tl~SYGv~ 162 (304)
T cd07421 83 AFLGVLPRPSDGSEFKSTWKEYEKNEEREGWYKGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGVP 162 (304)
T ss_pred hHhhcCCCccchhhhhhhhccccccccccccccccccccccccccchhhhccccccccccccccccccCcHHHHHHcCCC
Confidence 43311 0 112233342
Q ss_pred -------HHHHHHHHHHhcccccccccCCeE-------------EEEecccccCCCCChhhhhhcc-cCCCCCCccchhh
Q 008730 383 -------ETFVELFAEVFCCLPLAHVLNQKV-------------FVVHGGLFSVDGVKLSDIKTID-RFCEPPEEGLMCE 441 (556)
Q Consensus 383 -------~~~~~~~~~~~~~lP~~~~i~~~~-------------~~vHgGi~~~~~~~~~~i~~~~-r~~~~~~~~~~~~ 441 (556)
..+.....+|++.||+....+ ++ +|||||+ .|...--++.+.+. +....+ -.+
T Consensus 163 ~~~~~l~~avP~~H~~fl~~l~~~~~~~-~~~~~~~~g~~~~~lifVHAGl-rPg~pLe~Q~~~L~~~d~~~p----~~~ 236 (304)
T cd07421 163 HGSSDLIKAVPEEHKKFLRNLVWVHEED-DVCIETEEGLKHCKLIAVHAGL-EKSNSVEEQLKLLRTKDTSIP----KIA 236 (304)
T ss_pred cchHHHHHhCCHHHHHHHHhCCceEEeC-cccccccccccccceEEEEccc-CCCCChHHhhhhhhccccccc----ccc
Confidence 234556779999999998755 45 8999999 77654333333321 111111 227
Q ss_pred hhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEE
Q 008730 442 LLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIR 521 (556)
Q Consensus 442 llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~ 521 (556)
+||.+... ...++. + .. .=.+||-||+. +....+.-|.|-+.--| .+.--|+++
T Consensus 237 ~l~~R~~f----~~~~~~----~---------~~-~~~~VVhGHt~-----~~~~~~~Ri~iDtGa~~---~~~l~aa~v 290 (304)
T cd07421 237 PLSGRKNV----WNIPQE----L---------AD-KKTIVVSGHHG-----KLHIDGLRLIIDEGGGF---DDRPIAAIV 290 (304)
T ss_pred ccccchhh----hcCccc----c---------cC-CCeEEEECCCC-----CceecCCEEEEECCCCc---CCceeEEEE
Confidence 77776421 011110 0 00 11589999992 34555566677666654 244466666
Q ss_pred E
Q 008730 522 F 522 (556)
Q Consensus 522 ~ 522 (556)
|
T Consensus 291 l 291 (304)
T cd07421 291 L 291 (304)
T ss_pred e
Confidence 6
No 29
>PHA02239 putative protein phosphatase
Probab=99.88 E-value=2e-22 Score=193.51 Aligned_cols=173 Identities=23% Similarity=0.255 Sum_probs=119.0
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCC-CCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccccccc
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPS-EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY 371 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~-~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~ 371 (556)
+++++||||||+++.|.++++.+.... ..+.+||+|||||||++|.+|+..++.+.. .+.++++|+||||.+++....
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~l~~~~ 79 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEFYNIME 79 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHHHHHHh
Confidence 368999999999999999999875432 246799999999999999999999998753 456889999999998765331
Q ss_pred Cc--------------hhhHHhhhh-------------------------------HHHHHHHHHHhcccccccccCCeE
Q 008730 372 GF--------------EGEVRSKLS-------------------------------ETFVELFAEVFCCLPLAHVLNQKV 406 (556)
Q Consensus 372 g~--------------~~~~~~~~~-------------------------------~~~~~~~~~~~~~lP~~~~i~~~~ 406 (556)
+. ..+....|+ ...+..+..|++.||+....+ ++
T Consensus 80 ~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~~~-~~ 158 (235)
T PHA02239 80 NVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYKED-KY 158 (235)
T ss_pred CchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEEEC-CE
Confidence 10 112223331 012244566999999998865 79
Q ss_pred EEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeecc
Q 008730 407 FVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHE 486 (556)
Q Consensus 407 ~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~ 486 (556)
+|||||+ .|.. +..++...+++|.+. . .+ ...=+.||-||+
T Consensus 159 ifVHAGi-~p~~--------------~~~~q~~~~llWiR~-f----~~-------------------~~~g~~vV~GHT 199 (235)
T PHA02239 159 IFSHSGG-VSWK--------------PVEEQTIDQLIWSRD-F----QP-------------------RKDGFTYVCGHT 199 (235)
T ss_pred EEEeCCC-CCCC--------------ChhhCCHhHeEEecc-c----CC-------------------CCCCcEEEECCC
Confidence 9999999 4431 122334668999984 1 10 011247999999
Q ss_pred ccccCceEecCCeEEEEecCC
Q 008730 487 VKDEGYEIEHDGKLITVFSAP 507 (556)
Q Consensus 487 ~~~~G~~~~~~~~~itvfSa~ 507 (556)
++.++..... ++.|.|-+.-
T Consensus 200 p~~~~~~~~~-~~~I~IDtGa 219 (235)
T PHA02239 200 PTDSGEVEIN-GDMLMCDVGA 219 (235)
T ss_pred CCCCCccccc-CCEEEeecCc
Confidence 9876553332 3356666644
No 30
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.88 E-value=5.7e-22 Score=188.56 Aligned_cols=169 Identities=24% Similarity=0.260 Sum_probs=116.9
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccC
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 372 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g 372 (556)
+||+|||||||++..|.++++..++.+..+.++|+|||||||+++.||+.+|.. .++++++||||.+.+....+
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~~~~~~ 74 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAIDALRA 74 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHHhHhhC
Confidence 469999999999999999999988765577899999999999999999999865 36889999999998876544
Q ss_pred c--hhhHHhhh---------hHHHHHHHHHHhcccccccccC---CeEEEEecccccCCCCChhhhhhcccCCCCCCccc
Q 008730 373 F--EGEVRSKL---------SETFVELFAEVFCCLPLAHVLN---QKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGL 438 (556)
Q Consensus 373 ~--~~~~~~~~---------~~~~~~~~~~~~~~lP~~~~i~---~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~ 438 (556)
. ..+..... ...+.+.+.+||+.||+...++ .+++|||||+++.....+. .+ ++..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~~~~~-----~~--~~~~~~~ 147 (207)
T cd07424 75 EPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDWSDGV-----GA--VTLRPED 147 (207)
T ss_pred CCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchhhhhh-----hc--cccCccc
Confidence 1 11111111 2235666888999999998764 4799999998432211110 00 1223344
Q ss_pred hhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCc
Q 008730 439 MCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGY 492 (556)
Q Consensus 439 ~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~ 492 (556)
..+++|++|....... ...-+.+.||-||+..+..+
T Consensus 148 ~~~~~w~~~~~~~~~~------------------~~~~~~~~iV~GHTh~~~~~ 183 (207)
T cd07424 148 IEELLWSRTRIQKAQT------------------QPIKGVDAVVHGHTPVKRPL 183 (207)
T ss_pred ceeeeeccchhhhcCc------------------cccCCCCEEEECCCCCCcce
Confidence 5678998764322110 00114467999999976543
No 31
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.85 E-value=8.5e-21 Score=181.25 Aligned_cols=125 Identities=23% Similarity=0.273 Sum_probs=93.8
Q ss_pred eeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccc
Q 008730 284 LVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE 363 (556)
Q Consensus 284 ~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE 363 (556)
+..++....+|++||||||||++.|+++++.+.+.+..+.+||+||+|||||+|.||+.+|.. .+++.||||||
T Consensus 6 ~~~~~~~~~~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE 79 (218)
T PRK09968 6 YQKINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHE 79 (218)
T ss_pred eeeccCCCCCeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchH
Confidence 445555445689999999999999999999988766678899999999999999999998854 36788999999
Q ss_pred ccccccccCc--------hhhHHhhhhH---HHHHHHHHHhccccccccc---CCeEEEEecccc
Q 008730 364 SKSMNKIYGF--------EGEVRSKLSE---TFVELFAEVFCCLPLAHVL---NQKVFVVHGGLF 414 (556)
Q Consensus 364 ~~~~~~~~g~--------~~~~~~~~~~---~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~ 414 (556)
.+++.....- ..++...... .....+..|++.||+...+ +.++++||||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p 144 (218)
T PRK09968 80 AMALDAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP 144 (218)
T ss_pred HHHHHHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence 9887643210 0112222221 2334456799999999866 347899999983
No 32
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=2e-17 Score=157.66 Aligned_cols=168 Identities=33% Similarity=0.522 Sum_probs=140.5
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
++...++.+...|+.+++.++|++|+..|.+||+++|.++..|.++|.+|.++|.|+.|+++|+.|+.+||.+.++|.++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 46677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCCCccccccccccccccCCCCCccchh
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVST 168 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~ 168 (556)
|.+|..+|++++|++.|++||+++|++..++.+|..+...+++.+ .........+...+...
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~----------~~~~~~~~~d~~~~ig~-------- 217 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK----------SSAQASGSFDMAGLIGA-------- 217 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC----------cccccccchhhhhhccC--------
Confidence 999999999999999999999999999999999999887776621 00111111111111111
Q ss_pred HHHHHHhhhhhhhH-hhhcccHHHHHHHHhHHH
Q 008730 169 QAAILAATATVVVA-VVVMVWPAVATTVAGMVV 200 (556)
Q Consensus 169 ~~~~~~~~~~~~~a-~~l~~~~~~~~~~~~l~~ 200 (556)
.+....+. ..+|++|.++.+.+.|+.
T Consensus 218 ------~Pd~~s~~~~~l~nnp~l~~~~~~m~~ 244 (304)
T KOG0553|consen 218 ------FPDSRSMFNGDLMNNPQLMQLASQMMK 244 (304)
T ss_pred ------CccchhhhccccccCHHHHHHHHHHhh
Confidence 02344555 489999999999998876
No 33
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.63 E-value=1.4e-14 Score=129.48 Aligned_cols=116 Identities=22% Similarity=0.200 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008730 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (556)
Q Consensus 16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 95 (556)
.+..+|..+...|++++|+.+|++++..+|.+..+|..+|.++..+|++++|+..|+++++++|+++.+++++|.++..+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 96 g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
|++++|+..|++++++.|+++..+..++.+...+..
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988776543
No 34
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.57 E-value=8.4e-15 Score=150.24 Aligned_cols=127 Identities=22% Similarity=0.306 Sum_probs=101.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 85 (556)
+..-+|.-+.+|.++|++|-..+.|++|+.+|.+|+.+.|+++.++-++|.+|+++|..+-|+..|+++++++|..+.+|
T Consensus 244 AvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay 323 (966)
T KOG4626|consen 244 AVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAY 323 (966)
T ss_pred hhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHH
Confidence 34556777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
.++|.++...|+..+|..+|.+||.+.|.++++..+++.++...+++
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 88888888888888888888888888888888888888777777764
No 35
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.55 E-value=4.6e-14 Score=144.88 Aligned_cols=134 Identities=18% Similarity=0.245 Sum_probs=114.8
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
+-+|+-..++.++|+++-..|+..+|..+|++||.+.|+.+++.++||.+|.++|.+++|...|.++++..|....++.+
T Consensus 314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nN 393 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNN 393 (966)
T ss_pred hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhh
Confidence 45677788889999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh-----HHHHhcCC
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-----FEEAIAVP 141 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~-----~~~Ai~~~ 141 (556)
||.+|.++|++++|+.+|+.|+++.|...+++.+++..+..+|+.. +..||...
T Consensus 394 La~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999988888888888888888753 44555443
No 36
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.51 E-value=8.1e-13 Score=116.48 Aligned_cols=108 Identities=17% Similarity=0.224 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
++..+..+.+|..++..|++++|...|+-...++|.+...|++||.|+..+|+|++|+..|.+|+.++|+++.+++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~ 118 (556)
|+...|+.+.|++.|+.|+....+.+.-
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~~ 139 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVSEH 139 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccChhH
Confidence 9999999999999999999998554443
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=3.1e-14 Score=148.28 Aligned_cols=134 Identities=24% Similarity=0.329 Sum_probs=128.5
Q ss_pred CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
.+.+|..++.|+.+|++|.-+++++.|+++|++|+.+||..+.+|..+|.-+....+|+.|..+|++|+..+|++..|||
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwY 493 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWY 493 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.+|.+|.++++++.|.-+|++|++++|.+....-.++..+.++++ .++|+.+++
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~--~d~AL~~~~ 547 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR--KDKALQLYE 547 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh--hhHHHHHHH
Confidence 999999999999999999999999999999999999999999998 678877776
No 38
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.48 E-value=1.9e-12 Score=114.28 Aligned_cols=121 Identities=23% Similarity=0.403 Sum_probs=112.5
Q ss_pred CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
...+|..+.....+|..++..|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++..++
T Consensus 10 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 89 (135)
T TIGR02552 10 LGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF 89 (135)
T ss_pred HcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~ 127 (556)
.+|.++...|++++|+..|+++++++|++.........+..
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 99999999999999999999999999999886665555543
No 39
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.47 E-value=1.1e-12 Score=134.95 Aligned_cols=117 Identities=37% Similarity=0.661 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 94 (556)
..+...|..++..|+|++|+..|+++++++|+++.+|.++|.+|..+|++++|+.+++++++++|+++.+|+++|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 95 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
+|++++|+..|+++++++|+++.+...++.|...+..
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999877754
No 40
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.6e-12 Score=129.28 Aligned_cols=120 Identities=38% Similarity=0.641 Sum_probs=114.8
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
+|..+......|+.+++.|+|.+|+..|.+|+..+|+++.+|.|+|.||.+++.+..|+.+++++++++|++..+|++.|
T Consensus 354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg 433 (539)
T KOG0548|consen 354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKG 433 (539)
T ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 45567778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 129 (556)
.++..+.+|++|.+.|+++++++|++.++...+.+|...+
T Consensus 434 ~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 434 AALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998765
No 41
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=5.5e-12 Score=126.88 Aligned_cols=108 Identities=24% Similarity=0.262 Sum_probs=104.2
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.+..+..++.+|..+...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..+++++|
T Consensus 60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg 139 (296)
T PRK11189 60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG 139 (296)
T ss_pred cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34558889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~ 117 (556)
.++...|++++|++.|+++++++|+++.
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999984
No 42
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.41 E-value=3.4e-12 Score=141.70 Aligned_cols=131 Identities=22% Similarity=0.237 Sum_probs=125.0
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.|..+.++..+|..++..|++++|+..|+++++++|.+..+|..+|.++..+|++++|+..|+++++.+|+++.+++.+|
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 57778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.++..+|++++|+.+|+++++++|++..++..++.++..+|+ +++|+..+.
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~--~~eA~~~~~ 457 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS--IASSMATFR 457 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 999999999999999999999999999999999999998887 678877766
No 43
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.41 E-value=5.8e-12 Score=118.63 Aligned_cols=110 Identities=18% Similarity=0.222 Sum_probs=79.5
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhhC--HHHHHHHHHHHHHhCCCChHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAH-TKLEE--YGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~-~~~g~--~~~A~~~~~~al~l~p~~~~~~ 85 (556)
.+|++++.|..+|..+...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.+.++++++.+|+++.++
T Consensus 68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 45666777777777777777777777777777777777777777777764 55565 4777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 118 (556)
+.+|.++...|++++|+..|++++++.|.+..-
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 777777777777777777777777777665443
No 44
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.40 E-value=7e-12 Score=115.53 Aligned_cols=129 Identities=22% Similarity=0.206 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
..+.+...+|..|+..|++..|...+++||+.+|++..+|..+|..|.+.|+.+.|.+.|++|++++|++.+++.|.|..
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 92 YLAMGKFKEALKDFQQVKKL--SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++.+|++++|...|++|+.. .|.....+.+++.|..+.|+ ++.|-+.+.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq--~~~A~~~l~ 163 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ--FDQAEEYLK 163 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC--chhHHHHHH
Confidence 99999999999999999985 35567889999999888777 344444433
No 45
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.39 E-value=4.2e-12 Score=140.99 Aligned_cols=132 Identities=23% Similarity=0.288 Sum_probs=125.6
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
.+|.....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|++++.++|++..+++++
T Consensus 360 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 45777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
|.++..+|++++|+..|+++++..|+++.++..++.++...|+ +++|++.+.
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 491 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK--FDEAIEKFD 491 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC--HHHHHHHHH
Confidence 9999999999999999999999999999999999999998887 677777665
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.7e-12 Score=129.77 Aligned_cols=129 Identities=26% Similarity=0.339 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
-.++.++-.|+.|.-.++.++|+.+|++|++++|....+|..+|.-|.++++-..|++.|++|++++|.+..+||.+|++
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQA 407 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHH
Confidence 34556677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
|.-++-..=|+-+|++|.++.|.++..|..+|.||.++++ .++|+..+.
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~--~~eAiKCyk 456 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR--LEEAIKCYK 456 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence 9999999999999999999999999999999999999998 688888876
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=7e-12 Score=125.49 Aligned_cols=133 Identities=18% Similarity=0.228 Sum_probs=125.6
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
.-+|....+|..+|-.|...++...|++.|++|++++|.+..+|+.+|++|.-++.+.-|+-+|++|+++.|.++..|..
T Consensus 358 kLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~a 437 (559)
T KOG1155|consen 358 KLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVA 437 (559)
T ss_pred hcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHH
Confidence 34677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+|.||.++++.++|+++|.+|+.....+..++..+|+++..++. .++|...++
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d--~~eAa~~ye 490 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD--LNEAAQYYE 490 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 99999999999999999999999999999999999999999988 567766655
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=7.8e-12 Score=130.57 Aligned_cols=130 Identities=22% Similarity=0.332 Sum_probs=113.1
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
-+|.+..+|+-+|.+|+++++++.|+-.|++|++++|.+......+|..+.++|+.++|++.|++|+.+||.++...|..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 46778888999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV 140 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~ 140 (556)
|.+++.++++++|+..+++.-++.|++..++..+++++.++|+. ..|+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~--~~Al~~ 613 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT--DLALLH 613 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc--hHHHHh
Confidence 99999999999999999999999999999999999998888873 444433
No 49
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.34 E-value=8.1e-12 Score=111.55 Aligned_cols=104 Identities=13% Similarity=0.203 Sum_probs=97.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008730 34 IDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (556)
Q Consensus 34 l~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 113 (556)
...|+++++++|++ +..+|.++.+.|++++|+..|++++.++|.+..+++.+|.++..+|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46799999999985 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 114 NDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 114 ~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+++.++..++.++..+|+ +++|++.+.
T Consensus 90 ~~~~a~~~lg~~l~~~g~--~~eAi~~~~ 116 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGE--PGLAREAFQ 116 (144)
T ss_pred CCcHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999988 688877776
No 50
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.34 E-value=1.1e-11 Score=116.75 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=107.0
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHcCC--HHHHHH
Q 008730 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY-LAMGK--FKEALK 103 (556)
Q Consensus 27 ~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~-~~~g~--~~~A~~ 103 (556)
.++.++++..++++++.+|+++.+|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567799999999999999999999999999999999999999999999999999999999999985 67787 599999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 104 DFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 104 ~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.++++++.+|++..++..++..+...|+ +++|+...+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~--~~~Ai~~~~ 168 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQAD--YAQAIELWQ 168 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999999999999998888 788888776
No 51
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.33 E-value=8.9e-11 Score=113.51 Aligned_cols=262 Identities=17% Similarity=0.170 Sum_probs=171.7
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
..+|..++..+.+|..++..|++.+|+..|..|++.+|++..+++.+|.+|..+|+-..|+..+.+++++.|+...+...
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhhhhHHHHhcCCCCCccccccccccccccCCCCCc
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSS 164 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~l~~~p~~~ 164 (556)
+|.++.++|++++|...|+..+..+|++ .+++..++.+...... ..+.+.......-...-.+....+++.||+.
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l--~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda 189 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL--VQQLKSASGSGDCQNAIEMITHLLEIQPWDA 189 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH--HHHHHHHhcCCchhhHHHHHHHHHhcCcchh
Confidence 9999999999999999999999999965 4455555544433222 2233333322222222333345678889987
Q ss_pred cchhHHHHHH--------hhhhhhhHhhhcccHHHHH-HHHhHHHHHHHH-HhhhcccCCCCCCccccccccccccCCCC
Q 008730 165 FVSTQAAILA--------ATATVVVAVVVMVWPAVAT-TVAGMVVAVLMI-LGAYWWGSCSGSDVFTKSRKLELEVEPQY 234 (556)
Q Consensus 165 ~~~~~~~~~~--------~~~~~~~a~~l~~~~~~~~-~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (556)
.-....+.++ +..-+..++.+.+|.+.-- -++.+.-.+... ...-....|.. ++..-+.
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-----------ldpdHK~ 258 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK-----------LDPDHKL 258 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-----------cCcchhh
Confidence 6433222222 2233445555555543322 233333333221 11222233431 1111111
Q ss_pred CCcccCCCCCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHhhCCCeeeecC
Q 008730 235 SGARIEGDVITLDFVKKMMDDFKNQK-CLHKRYAFQIVLQTREMLRALPSLVDIDI 289 (556)
Q Consensus 235 ~g~~l~~~~it~~~i~~~i~~~~~~~-~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 289 (556)
|=|. ...++++...+.+-+ .+........+++..++++.+|....|..
T Consensus 259 Cf~~-------YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~ 307 (504)
T KOG0624|consen 259 CFPF-------YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRY 307 (504)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceee
Confidence 1111 223444444443322 34455566788888999999998665543
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=2.7e-11 Score=132.48 Aligned_cols=131 Identities=13% Similarity=0.029 Sum_probs=94.7
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
.+|+.+.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.+++.+
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
+.+++..|++++|+..++++++.. |+++.++..++.++..+|+ +++|.+..
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~--~~eA~~~~ 464 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK--HELARKLT 464 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC--HHHHHHHH
Confidence 666667777777777777777664 6667777777777776666 45555544
No 53
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4.4e-11 Score=119.19 Aligned_cols=122 Identities=30% Similarity=0.470 Sum_probs=110.1
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---------------NAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al 75 (556)
...+......|+.+++.|+|..|...|++|+..-.. -..++.|++.|+.++++|.+|+..++++|
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345667788999999999999999999999986332 13568999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 76 EIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 76 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
.++|+|..++|+.|.++..+|+|+.|+..|++|++++|+|..+...+..+..+..+.
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888776654
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=2.8e-11 Score=132.32 Aligned_cols=133 Identities=20% Similarity=0.141 Sum_probs=117.9
Q ss_pred CCChhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 008730 8 NSSVSRAEELKALANEAFRA---------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~---------g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 78 (556)
+.+|+.+.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|++++|+..|+++++++
T Consensus 289 ~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 368 (553)
T PRK12370 289 NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS 368 (553)
T ss_pred hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 45677888888888877643 458999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 79 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
|+++.+++.+|.++..+|++++|+..++++++++|.++.+...++.++...++ +++|+....
T Consensus 369 P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~--~eeA~~~~~ 430 (553)
T PRK12370 369 PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG--IDDAIRLGD 430 (553)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC--HHHHHHHHH
Confidence 99999999999999999999999999999999999998877666666666665 677877654
No 55
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=1.5e-11 Score=126.60 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=116.8
Q ss_pred CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH------------------------------------
Q 008730 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY------------------------------------ 50 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a------------------------------------ 50 (556)
..++|.++++|..+|.+....++-..|+..++++++++|++.++
T Consensus 312 VkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~ 391 (579)
T KOG1125|consen 312 VKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVS 391 (579)
T ss_pred HhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccc
Confidence 35678888888888888888888888888888888887775433
Q ss_pred -----------------------------------------HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 51 -----------------------------------------YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 51 -----------------------------------------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
...||..|.-.|+|++|+++|+.||+.+|++...|.+||
T Consensus 392 a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLG 471 (579)
T KOG1125|consen 392 AGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLG 471 (579)
T ss_pred cCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhh
Confidence 566888888889999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..+....+.++|+..|++|+++.|....+++++|.++..+|. |++|+.++-
T Consensus 472 AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~--ykEA~~hlL 522 (579)
T KOG1125|consen 472 ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA--YKEAVKHLL 522 (579)
T ss_pred HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh--HHHHHHHHH
Confidence 999999999999999999999999999999999999988887 677777654
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=1e-10 Score=111.88 Aligned_cols=134 Identities=17% Similarity=0.215 Sum_probs=120.4
Q ss_pred CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
.......+..+..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..+++
T Consensus 24 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 24 TTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred cccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 34445568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++|.++...|++++|+..+++++... |.....+..++.++...++ +++|...+.
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 159 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD--FDKAEKYLT 159 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999864 4566788888988888777 566666655
No 57
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.29 E-value=6.1e-11 Score=135.54 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
....+..++......|++++|+..|+++++.+|+ +.++.++|.++.++|++++|+..|+++++++|+++.++.++|.++
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3344445555556669999999999999999996 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
...|++++|+..|+++++++|+++.++..++.++..+|+ +++|+..++
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd--~~eA~~~l~ 701 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD--MAATQHYAR 701 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 999999999999999999999999999999999999888 677766665
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=5.3e-11 Score=109.77 Aligned_cols=134 Identities=16% Similarity=0.079 Sum_probs=121.1
Q ss_pred CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHH
Q 008730 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKG 84 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~ 84 (556)
.+.+|+...+|..++..|.+.|+.+.|-+.|++|+.++|++.++++|.|.-++.+|+|++|.+.|++|+.. -|.-..+
T Consensus 62 L~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t 141 (250)
T COG3063 62 LEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDT 141 (250)
T ss_pred HHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999964 3445789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+-|+|.|-.+.|+.+.|.++|+++++++|+++.+...++..+...++ +..|....+
T Consensus 142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~--y~~Ar~~~~ 197 (250)
T COG3063 142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD--YAPARLYLE 197 (250)
T ss_pred hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc--chHHHHHHH
Confidence 99999999999999999999999999999999999999988877766 555544443
No 59
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.26 E-value=4.8e-11 Score=131.48 Aligned_cols=130 Identities=6% Similarity=-0.019 Sum_probs=122.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
+..+.++..+|.+....|.+++|+..++.++++.|++..++.+++.++.+.+++++|+..+++++..+|+++.+++.+|.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 55688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++.++|++++|+..|++++..+|+++.++..++.++...|+ .++|...++
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~--~~~A~~~~~ 212 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA--LWRARDVLQ 212 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999999999999999999998 455555544
No 60
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.25 E-value=1.9e-10 Score=108.32 Aligned_cols=132 Identities=18% Similarity=0.187 Sum_probs=120.6
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
..+.....+..+|...+..|+|.+|+..++++..++|+++++|..+|.+|.+.|++++|...|.+++++.|.++.+..|+
T Consensus 95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNl 174 (257)
T COG5010 95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNL 174 (257)
T ss_pred cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhH
Confidence 34555556667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV 140 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~ 140 (556)
|..|.-.|+++.|...+.++....+.+..+..+++.+....++..+.+.+..
T Consensus 175 gms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999999999999999999999999999999999999999988555554443
No 61
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.25 E-value=1.9e-11 Score=111.86 Aligned_cols=159 Identities=21% Similarity=0.213 Sum_probs=100.1
Q ss_pred cceEeccCCCCHHHH---HHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHH--HhccccCCCeEEEecccccccccc
Q 008730 294 HFTVCGDVHGQFYDL---LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTL--FAFKCMCPSAIYLSRGNHESKSMN 368 (556)
Q Consensus 294 ~i~vigDiHG~~~~l---~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l--~~lk~~~p~~v~~lrGNHE~~~~~ 368 (556)
||++|||+||..... .+.+.........+.+|++||++|+|..+.+..... .......+..+++++||||.....
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~~ 81 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSGN 81 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHHH
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccceec
Confidence 689999999999988 343333333344567999999999999988877754 444455678999999999987764
Q ss_pred cccCchhhHH----------------------------------hhhhHHHHHHHHHHhcccccccccCCeEEEEecccc
Q 008730 369 KIYGFEGEVR----------------------------------SKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLF 414 (556)
Q Consensus 369 ~~~g~~~~~~----------------------------------~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~ 414 (556)
..+....... .............+.............|+++|.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p~- 160 (200)
T PF00149_consen 82 SFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHPP- 160 (200)
T ss_dssp HHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSSS-
T ss_pred cccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccccccccccccccceeEEEecCC-
Confidence 3321111110 00111222222333333333334456899999988
Q ss_pred cCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeecccc
Q 008730 415 SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVK 488 (556)
Q Consensus 415 ~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~ 488 (556)
.+....-... .....+.+.+..++++.++++++.||+-.
T Consensus 161 ~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~v~~~~~GH~H~ 199 (200)
T PF00149_consen 161 YSSSSDSSSY-----------------------------------GNESKGREALEELLKKYNVDLVLSGHTHR 199 (200)
T ss_dssp STTSSSTHHH-----------------------------------SSEEEHHHHHHHHHHHTTCSEEEEESSSS
T ss_pred CCcccccccc-----------------------------------chhhccHHHHHHHHhhCCCCEEEeCceec
Confidence 3221110000 12356788999999999999999999853
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=2.6e-10 Score=109.07 Aligned_cols=132 Identities=22% Similarity=0.233 Sum_probs=120.9
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--CCChHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID--PRYPKGYY 86 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~ 86 (556)
..|..+..+..+|..+...|++++|+..|+++++..|.+..++.++|.++...|++++|+..+++++... +.....++
T Consensus 60 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 139 (234)
T TIGR02521 60 HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLE 139 (234)
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHH
Confidence 3566788999999999999999999999999999999999999999999999999999999999999854 55678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.+|.++...|++++|...++++++..|++..++..++.++...++ +++|+....
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 193 (234)
T TIGR02521 140 NAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ--YKDARAYLE 193 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999999999999999999999999999988877 677776655
No 63
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.24 E-value=2.3e-10 Score=98.07 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYR 87 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~ 87 (556)
++.++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++.+.|++++|+..|++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 5789999999999999999999999999999885 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 121 (556)
+|.++..+|++++|+..++++++..|++..+...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999999999999999999999999998876544
No 64
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.24 E-value=1.4e-10 Score=129.04 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHH----HHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS----AIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~----A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
....++..+...|++++|+..|+++++.+|+++.++.++|.++...|++++ |+..|+++++++|+++.++..+|.+
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 293 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 345567888899999999999999999999999999999999999999886 7999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+...|++++|+..++++++++|+++.++..++.++...|+ +++|+..+.
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~--~~eA~~~l~ 342 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ--YTAASDEFV 342 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 9999999999999999999999999999999999888887 677776665
No 65
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.5e-10 Score=104.08 Aligned_cols=116 Identities=36% Similarity=0.599 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 85 (556)
...+..+...|+.++..|+|++|...|..||++.|.. +.+|.++|.|+++++.++.|+..+.+|++++|.+..++
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 4557788899999999999999999999999999986 45788999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 126 (556)
.++|.+|.++..+++|+..|++.++.+|....+....+++-
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 99999999999999999999999999999888776666543
No 66
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.22 E-value=2.1e-10 Score=131.28 Aligned_cols=128 Identities=15% Similarity=0.034 Sum_probs=118.7
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
+|+ +..+..+|.++.+.|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++++|+++.+++++|
T Consensus 606 ~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 606 APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA 684 (987)
T ss_pred CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 454 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV 140 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~ 140 (556)
.++..+|++++|+..|+++++++|++..+....+.+.....+ ++.+.+.
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~--~~~a~~~ 733 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN--FRRLHEE 733 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH--HHHHHHH
Confidence 999999999999999999999999999999988888776665 4555443
No 67
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.8e-10 Score=116.11 Aligned_cols=126 Identities=24% Similarity=0.308 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 94 (556)
..|..+|..|....+-++-...|++|.+++|++++.|+.+|+.++-+++|++|+..|++++.++|.+..++.+++.++++
T Consensus 361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 361 SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR 440 (606)
T ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH
Confidence 33667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 95 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+++++++...|+.+.+..|+.++++...++++...++ |++|++.+.
T Consensus 441 ~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq--Fd~A~k~YD 486 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ--FDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh--HHHHHHHHH
Confidence 7777777777777777777777777777777665555 556655554
No 68
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.21 E-value=7.1e-11 Score=118.02 Aligned_cols=132 Identities=22% Similarity=0.300 Sum_probs=106.3
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.+..+..|..+|..+.+.|+.++|+..|+++++.+|+++.++..++.++...|+++++.+.++...+..|+++..+..+|
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 221 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA 221 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999998888888999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~ 143 (556)
.++..+|++++|+.+|+++++..|+++.++..++.++...|+ .++|..+...
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~--~~~A~~~~~~ 273 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR--KDEALRLRRQ 273 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHhccccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence 999999999999999999999999999999999999999998 6788776653
No 69
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=6e-11 Score=122.22 Aligned_cols=121 Identities=15% Similarity=0.276 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
..++....+|..|+..|+|++|+.+|+.||..+|++...|+.||.++....+.++|+.+|++|+++.|.++.++|++|.+
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHhhh
Q 008730 92 YLAMGKFKEALKDFQQVKKLSPND----------PDAAQKVKECEKAVKKL 132 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~p~~----------~~~~~~l~~~~~~~~~~ 132 (556)
++.+|.|++|.++|-.||.+.+.. ..+|..|..+...+++.
T Consensus 508 ~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 999999999999999999997651 24677777777766663
No 70
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.20 E-value=4.9e-10 Score=103.38 Aligned_cols=112 Identities=21% Similarity=0.297 Sum_probs=101.0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 008730 4 METENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (556)
Q Consensus 4 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 80 (556)
+.+.+.++..+..++.+|..+...|++++|+.+|+++++..|+. +.++.++|.++.++|++++|+..++++++.+|+
T Consensus 25 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 25 ILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred HcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 34556678889999999999999999999999999999987764 578999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 008730 81 YPKGYYRRGAAYLAMGK--------------FKEALKDFQQVKKLSPND 115 (556)
Q Consensus 81 ~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~l~p~~ 115 (556)
+..++..+|.++...|+ +++|++.+++++..+|++
T Consensus 105 ~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 105 QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999999888 577888888888888876
No 71
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.20 E-value=4.2e-10 Score=109.34 Aligned_cols=112 Identities=28% Similarity=0.362 Sum_probs=102.9
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH--
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK-- 83 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-- 83 (556)
.++..+..++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++.+.|++++|+..|+++++.+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4466788999999999999999999999999999999876 68899999999999999999999999999998876
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHH
Q 008730 84 -GYYRRGAAYLAM--------GKFKEALKDFQQVKKLSPNDPDAAQ 120 (556)
Q Consensus 84 -~~~~lg~~~~~~--------g~~~~A~~~~~~al~l~p~~~~~~~ 120 (556)
+++.+|.++... |++++|++.|+++++..|++..+..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 153 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD 153 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence 799999999987 8899999999999999999876643
No 72
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.18 E-value=3.6e-10 Score=125.88 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=101.6
Q ss_pred ChhHHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQ----AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~----Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 85 (556)
.|+.+..+..+|..+...|++++ |+..|+++++++|+++.++..+|.++...|++++|+..++++++++|+++.++
T Consensus 242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 45566777778888888888775 67888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..+|.++...|++++|+..|+++++.+|++..+...++.++...|+ +++|+..+.
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~--~deA~~~l~ 376 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK--TSEAESVFE 376 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 8888888888888888888888888888777666666777766665 677766665
No 73
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.17 E-value=4.5e-10 Score=90.55 Aligned_cols=99 Identities=39% Similarity=0.664 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008730 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (556)
Q Consensus 16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 95 (556)
.++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|++.+++++...|.+..+++.+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 008730 96 GKFKEALKDFQQVKKLSPN 114 (556)
Q Consensus 96 g~~~~A~~~~~~al~l~p~ 114 (556)
|++++|...++++++..|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988874
No 74
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.16 E-value=1.8e-10 Score=101.50 Aligned_cols=106 Identities=18% Similarity=0.253 Sum_probs=100.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730 35 DLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (556)
Q Consensus 35 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 114 (556)
+.|+++++.+|++..+...+|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 115 DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 115 ~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++..+..++.++...++ +++|+..+.
T Consensus 84 ~~~~~~~la~~~~~~g~--~~~A~~~~~ 109 (135)
T TIGR02552 84 DPRPYFHAAECLLALGE--PESALKALD 109 (135)
T ss_pred ChHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999998887 677777665
No 75
>PRK15331 chaperone protein SicA; Provisional
Probab=99.16 E-value=1.2e-09 Score=96.95 Aligned_cols=115 Identities=17% Similarity=0.107 Sum_probs=104.9
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
.-+++..+..+..|..++..|++++|...|+-....+|.+++.|..||.|+..+++|++|+..|..|..+++++|.+.+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 123 (556)
.|.||..+|+.++|+.+|+.++. .|.+......-.
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~ 145 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKAL 145 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHH
Confidence 99999999999999999999998 566555443333
No 76
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.4e-10 Score=116.88 Aligned_cols=113 Identities=33% Similarity=0.574 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 93 (556)
+..+...|+..+..|+|+.|+.+|.+|+.++|.+...|.++..+|..+|+|++|+.+..+.++++|+.+.+|.++|.++.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (556)
Q Consensus 94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 126 (556)
.+|+|++|+..|.+.|+.+|+|...+..++.++
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999988
No 77
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.15 E-value=1.9e-10 Score=88.81 Aligned_cols=66 Identities=36% Similarity=0.617 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 008730 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSP 113 (556)
Q Consensus 48 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p 113 (556)
+..|..+|.++...|+|++|+..|+++++++|+++.+++++|.++..+| ++++|+++++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4444445555555555555555555555555555555555555555554 34555555555554444
No 78
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.14 E-value=1.8e-10 Score=88.92 Aligned_cols=67 Identities=39% Similarity=0.584 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCC
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDP 79 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p 79 (556)
.+..|..+|..++..|+|++|+.+|+++++++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999999998
No 79
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.14 E-value=2.8e-10 Score=110.01 Aligned_cols=114 Identities=36% Similarity=0.492 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 93 (556)
...+...|+.|+++|.|++|+.+|.+++..+|.++..+.++|.+|+++++|..|..+|+.|+.+|..+..+|.++|.+-.
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34467889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (556)
Q Consensus 94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~ 127 (556)
.+|...+|.+.++.+|++.|++.+....++.+..
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999999998887766665543
No 80
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=5e-10 Score=113.07 Aligned_cols=135 Identities=17% Similarity=0.210 Sum_probs=118.1
Q ss_pred CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
..-+|..+..|+.+|+.++-.++|++|+..|+++++++|++..++..++.+.+++++++++...|+.+.+..|+.+++|.
T Consensus 387 ~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~ 466 (606)
T KOG0547|consen 387 EDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYN 466 (606)
T ss_pred HhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..|.++..+++++.|++.|.+|+++.|. ++..+...+.+..+- ..++.+|+.+..
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~ 527 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLR 527 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHH
Confidence 9999999999999999999999999998 555555555444332 233566666555
No 81
>PLN02789 farnesyltranstransferase
Probab=99.11 E-value=2.5e-09 Score=107.92 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=108.1
Q ss_pred CChhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHhCCCChHHH
Q 008730 9 SSVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY--GSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g-~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~--~~A~~~~~~al~l~p~~~~~~ 85 (556)
.+|....+|..++.++...| ++++|+..++++++.+|++..+|..++.++.++++. ++++..++++++.+|++..+|
T Consensus 66 lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW 145 (320)
T PLN02789 66 LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAW 145 (320)
T ss_pred HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHH
Confidence 46778889999999999888 689999999999999999999999999888888874 778899999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 129 (556)
..++.++..+|++++|++++.++++.+|.|..++..++.+...+
T Consensus 146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 146 SHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998887655
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.11 E-value=1.5e-09 Score=105.42 Aligned_cols=130 Identities=17% Similarity=0.180 Sum_probs=113.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh--------hCHHHHHHHHHHHHHhCC
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV---YYANRAFAHTKL--------EEYGSAIQDASKAIEIDP 79 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~---a~~~lg~~~~~~--------g~~~~A~~~~~~al~l~p 79 (556)
+....+++.+|..++..|++++|+..|+++++.+|+++. +++.+|.++.+. |++++|+..+++++..+|
T Consensus 67 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 67 PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 444578899999999999999999999999999998876 799999999887 899999999999999999
Q ss_pred CChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhhhhHHHHhc
Q 008730 80 RYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKAVKKLKFEEAIA 139 (556)
Q Consensus 80 ~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~~~~~~~~~~~~~Ai~ 139 (556)
++..++ +.+|.+|...|++++|+..|+++++..|+. +.++..++.++..+|+ +++|+.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~--~~~A~~ 224 (235)
T TIGR03302 147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL--KDLAQD 224 (235)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC--HHHHHH
Confidence 986542 467889999999999999999999997764 5799999999999988 677766
Q ss_pred CCC
Q 008730 140 VPE 142 (556)
Q Consensus 140 ~~~ 142 (556)
..+
T Consensus 225 ~~~ 227 (235)
T TIGR03302 225 AAA 227 (235)
T ss_pred HHH
Confidence 543
No 83
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.2e-09 Score=108.25 Aligned_cols=130 Identities=28% Similarity=0.510 Sum_probs=110.0
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 85 (556)
.+.....+...|+..++.|.|.+|.++|..+|.++|++ +.+|.++|.+..++|+..+|+..++.|+.+||...+++
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 35667788899999999999999999999999999986 56799999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh---hhhHHHHhcC
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK---KLKFEEAIAV 140 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~---~~~~~~Ai~~ 140 (556)
...|.|+..+++|++|+++|++|++...+ ......+.++...++ +.++-+-+-.
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykilGi 381 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKILGI 381 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHhhh
Confidence 99999999999999999999999999866 444444444444443 4444443333
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=1.3e-09 Score=109.57 Aligned_cols=115 Identities=18% Similarity=0.128 Sum_probs=104.8
Q ss_pred HccCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 008730 26 RAKKYSQAIDLYSQAIEL---NSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101 (556)
Q Consensus 26 ~~g~~~~Al~~~~~al~~---~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A 101 (556)
..++.+.++..+.+++.. +|. .+..|+.+|.+|...|++++|+..|+++++++|+++.+|+.+|.++...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 346778899999999964 333 3788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 102 LKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 102 ~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+..|+++++++|++..++.+++.++...++ +++|++.++
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--~~eA~~~~~ 156 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGR--YELAQDDLL 156 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 999999999999999999999999988887 788877776
No 85
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.07 E-value=2e-09 Score=95.04 Aligned_cols=100 Identities=17% Similarity=0.179 Sum_probs=91.2
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730 40 AIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (556)
Q Consensus 40 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 118 (556)
...++ ++.-+..+.+|..++..|++++|...|+.++.+||.+...|++||.++..+|++++|+..|.+|+.++|+++.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34556 77788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHhcCC
Q 008730 119 AQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
+.+++.|+..+|+. +.|.+.+
T Consensus 106 ~~~ag~c~L~lG~~--~~A~~aF 126 (157)
T PRK15363 106 PWAAAECYLACDNV--CYAIKAL 126 (157)
T ss_pred HHHHHHHHHHcCCH--HHHHHHH
Confidence 99999999999984 4444443
No 86
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.07 E-value=2.9e-09 Score=96.38 Aligned_cols=82 Identities=28% Similarity=0.449 Sum_probs=61.8
Q ss_pred cceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCc
Q 008730 294 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 373 (556)
Q Consensus 294 ~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~ 373 (556)
+|.++||+||+...+.++++.... .+.+|++||++++++... ++ ....++.++||||....
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~---~d~ii~~GD~~~~~~~~~--------~~--~~~~~~~V~GNhD~~~~------ 61 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD---VDLIIHAGDVLYPGPLNE--------LE--LKAPVIAVRGNCDGEVD------ 61 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC---CCEEEECCccccccccch--------hh--cCCcEEEEeCCCCCcCC------
Confidence 488999999999999999997654 467999999999998765 11 23468999999997542
Q ss_pred hhhHHhhhhHHHHHHHHHHhccccccccc---CCeEEEEeccc
Q 008730 374 EGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGL 413 (556)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi 413 (556)
+..+|....+ +.+++++||..
T Consensus 62 -------------------~~~~p~~~~~~~~g~~i~v~Hg~~ 85 (155)
T cd00841 62 -------------------FPILPEEAVLEIGGKRIFLTHGHL 85 (155)
T ss_pred -------------------cccCCceEEEEECCEEEEEECCcc
Confidence 3445644433 34799999865
No 87
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.07 E-value=2.4e-09 Score=121.68 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=120.2
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
++..+.++..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++. ++.+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.++...|++++|+..+++++++.|+++.++..++.++...+. .++|++..+
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~--~e~Al~~l~ 174 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL--SAPALGAID 174 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--hHHHHHHHH
Confidence 999999999999999999999999999999999988876555 566666554
No 88
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.06 E-value=4.8e-09 Score=109.77 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 85 (556)
+....++..++..+...|++++|++.++++++.+|.+. ..+..+|.++.+.|++++|+..|+++++.+|++..++
T Consensus 138 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 217 (389)
T PRK11788 138 DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRAS 217 (389)
T ss_pred cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHH
Confidence 34455566666666666666666666666666655442 2344566666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhh
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECEKAVKK 131 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~l~~~~~~~~~ 131 (556)
+.+|.++...|++++|++.++++++.+|.+ ..++..++.++...++
T Consensus 218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 666666666666666666666666665554 2344555555555544
No 89
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.06 E-value=6e-09 Score=95.70 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=94.5
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 84 (556)
......+..++.+|..+...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..|++++.++|.+..+
T Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~ 108 (168)
T CHL00033 29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA 108 (168)
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 3445568889999999999999999999999999997763 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q 008730 85 YYRRGAAYL-------AMGKFK-------EALKDFQQVKKLSPNDP 116 (556)
Q Consensus 85 ~~~lg~~~~-------~~g~~~-------~A~~~~~~al~l~p~~~ 116 (556)
+.++|.++. .+|+++ +|+..|++++..+|.+.
T Consensus 109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999999 777766 56666667777787654
No 90
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.7e-09 Score=101.51 Aligned_cols=117 Identities=20% Similarity=0.172 Sum_probs=106.0
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHhCCCChHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKG 84 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~ 84 (556)
..+|++++.|..+|.+|+..|+++.|...|.+|+++.|++++.+..+|.+++.+. .-.+|...+++++++||.++.+
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 4678999999999999999999999999999999999999999999999887654 3678999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 124 (556)
.+.+|..++..|+|.+|+..|+..++..|.+......+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 9999999999999999999999999999887665444443
No 91
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.03 E-value=4.8e-09 Score=124.55 Aligned_cols=122 Identities=20% Similarity=0.213 Sum_probs=100.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH--------------H
Q 008730 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK--------------G 84 (556)
Q Consensus 19 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--------------~ 84 (556)
.+|..+...|++++|+..|+++++.+|+++.++..+|.++.++|++++|+..|+++++++|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 44788888899999999999999999999999999999999999999999999999988887642 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
...+|.++...|++++|+..|+++++++|++..++..++.++...++ +++|++.++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~--~~eA~~~y~ 409 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD--YAAAERYYQ 409 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 23457788888888888888888888888888888888888887776 556655554
No 92
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.03 E-value=6.4e-10 Score=89.54 Aligned_cols=82 Identities=29% Similarity=0.489 Sum_probs=74.2
Q ss_pred HccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 008730 26 RAKKYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK 103 (556)
Q Consensus 26 ~~g~~~~Al~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~ 103 (556)
..|+|++|+..|+++++.+|. +...++.+|.|+++.|+|++|+..+++ ...+|.++..++.+|.|+..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 567788899999999999999999999 88899889999999999999999999999
Q ss_pred HHHHH
Q 008730 104 DFQQV 108 (556)
Q Consensus 104 ~~~~a 108 (556)
.|++|
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 93
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.03 E-value=6.8e-09 Score=123.24 Aligned_cols=124 Identities=18% Similarity=0.169 Sum_probs=88.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH-----
Q 008730 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA----- 91 (556)
Q Consensus 17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~----- 91 (556)
...+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++++|++..++..++.+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 345577777777777777777777777777777777777777777777777777777777777776665544433
Q ss_pred -------------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhH
Q 008730 92 -------------------------------------YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKF 134 (556)
Q Consensus 92 -------------------------------------~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 134 (556)
+...|++++|++.|+++++++|+++.++..++.++...++ +
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~--~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ--R 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--H
Confidence 3346777777777777777777777777777777777666 4
Q ss_pred HHHhcCCC
Q 008730 135 EEAIAVPE 142 (556)
Q Consensus 135 ~~Ai~~~~ 142 (556)
++|+..++
T Consensus 512 ~~A~~~l~ 519 (1157)
T PRK11447 512 SQADALMR 519 (1157)
T ss_pred HHHHHHHH
Confidence 55555444
No 94
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.03 E-value=2.8e-09 Score=96.44 Aligned_cols=152 Identities=21% Similarity=0.319 Sum_probs=93.0
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccC
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 372 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g 372 (556)
+||+++||+|++...+.++++.+. ..+.+|++||++|+ .+++..+... .+++++||||.........
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~~---~~d~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~~~~~~~ 67 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYIN---EPDFVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWAFPNEND 67 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHHT---TESEEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTHHHSEEC
T ss_pred CEEEEEeCCCCChhHHHHHHHHhc---CCCEEEECCCchhH----HHHHHHHhcC------CEEEEeCCcccccchhhhh
Confidence 479999999999999999999882 35679999999993 7777777554 6999999999655333221
Q ss_pred chhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCC
Q 008730 373 FEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG 452 (556)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~ 452 (556)
.. + +....... .-+.+++++||.. ..
T Consensus 68 ~~------~----------~~~~~~~~-~~~~~i~~~H~~~-~~------------------------------------ 93 (156)
T PF12850_consen 68 EE------Y----------LLDALRLT-IDGFKILLSHGHP-YD------------------------------------ 93 (156)
T ss_dssp TC------S----------SHSEEEEE-ETTEEEEEESSTS-SS------------------------------------
T ss_pred cc------c----------cccceeee-ecCCeEEEECCCC-cc------------------------------------
Confidence 11 0 11222222 1256899999866 21
Q ss_pred CCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEe
Q 008730 453 RGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE 523 (556)
Q Consensus 453 ~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~ 523 (556)
...+.+.+.+.+...++++++-||.-...-++ ..+..+++.=|....- .+...++++|+
T Consensus 94 ---------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~-~~~~~~~~~Gs~~~~~--~~~~~~~~i~~ 152 (156)
T PF12850_consen 94 ---------VQWDPAELREILSRENVDLVLHGHTHRPQVFK-IGGIHVINPGSIGGPR--HGDQSGYAILD 152 (156)
T ss_dssp ---------STTTHHHHHHHHHHTTSSEEEESSSSSEEEEE-ETTEEEEEE-GSSS-S--SSSSEEEEEEE
T ss_pred ---------cccChhhhhhhhcccCCCEEEcCCcccceEEE-ECCEEEEECCcCCCCC--CCCCCEEEEEE
Confidence 11345567777889999999999998533332 2233444444433221 22366776663
No 95
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.01 E-value=8.5e-09 Score=93.70 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=49.1
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccc
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 365 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 365 (556)
+++.||||+||++..+..+++.....+..+.++++||++ +.+++..+..+. ..++.++||||..
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~~ 64 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDGE 64 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCch
Confidence 468999999999988777666555443456799999999 467777776553 2589999999983
No 96
>PLN02789 farnesyltranstransferase
Probab=99.01 E-value=5.3e-09 Score=105.52 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
+-.+++-.+-.++...+.+++|+..+.++++++|.+..+|..++.++..++ ++++|+..++++++.+|++..+|+.++.
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~ 114 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence 444555555556777889999999999999999999999999999999998 6899999999999999999999999999
Q ss_pred HHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 91 AYLAMGKF--KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 91 ~~~~~g~~--~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++..+++. ++++.+++++++.+|+|..++...+.+...++. ++++++...
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~--~~eeL~~~~ 166 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG--WEDELEYCH 166 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh--HHHHHHHHH
Confidence 99999874 789999999999999999999999999999987 777877765
No 97
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.01 E-value=3.3e-09 Score=122.31 Aligned_cols=115 Identities=16% Similarity=0.138 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008730 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (556)
Q Consensus 16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 95 (556)
.+..++..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 96 g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
|+ .+|+..+++++++.|+++..+..++.++...++
T Consensus 818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 55 445555555555555555555555555444444
No 98
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.7e-09 Score=103.77 Aligned_cols=92 Identities=28% Similarity=0.413 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (556)
Q Consensus 49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 128 (556)
+-+-.-|.-+++.++|++|+..|.+||+++|.++..|.++|.+|.++|.++.|++.+++|+.++|....+|..++.++..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34666788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHhcCCC
Q 008730 129 VKKLKFEEAIAVPE 142 (556)
Q Consensus 129 ~~~~~~~~Ai~~~~ 142 (556)
+|+ +++|++.++
T Consensus 162 ~gk--~~~A~~ayk 173 (304)
T KOG0553|consen 162 LGK--YEEAIEAYK 173 (304)
T ss_pred cCc--HHHHHHHHH
Confidence 988 678877766
No 99
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=9.9e-09 Score=104.46 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
+....+++..+..++..|++++|+..++..++..|+|+..+...+.++.+.++.++|++.+++++.++|..+..++++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
+|.+.|++++|+..+++.+..+|+++..|..|++++..+|+.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 999999999999999999999999999999999999999984
No 100
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.98 E-value=7.9e-09 Score=108.16 Aligned_cols=126 Identities=16% Similarity=0.126 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-----HHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-----KGYYRRG 89 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-----~~~~~lg 89 (556)
..+..+|..+...|++++|+..|+++++.+|.+..++..++.++.+.|++++|++.++++++.+|.+. ..+..+|
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666555432 2344556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.++...|++++|+..|+++++..|++..++..++.++...++ +++|++.+.
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~ 238 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD--YAAAIEALE 238 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 666666666666666666666666666666666666555554 455544443
No 101
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=98.98 E-value=8.8e-10 Score=89.33 Aligned_cols=60 Identities=53% Similarity=0.954 Sum_probs=43.7
Q ss_pred cccCCCCCCcccCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeee
Q 008730 228 LEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDI 287 (556)
Q Consensus 228 ~~~~~~~~g~~l~~~~it~~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 287 (556)
+.++.+|+||++++..+|.++++.|++.|++++.||++++..++.++.++|+++|++++|
T Consensus 36 i~Ve~sY~GP~l~~~~it~efv~~mie~FK~~K~Lhkkyv~~Il~~~~~llk~~PslVeI 95 (95)
T PF08321_consen 36 IDVEDSYDGPRLEDEPITLEFVKAMIEWFKNQKKLHKKYVYQILLEAKKLLKQLPSLVEI 95 (95)
T ss_dssp T---SS--SS--BTTB--HHHHHHHHHHHHCT----HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred eecCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhCcCccCC
Confidence 568899999999966799999999999999999999999999999999999999999986
No 102
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.98 E-value=1.6e-08 Score=109.32 Aligned_cols=126 Identities=13% Similarity=0.150 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
..++.+...|+.++..|++++|...+.++++.+|.++.+|+.||.+|.++|+.++|...+-.|-.++|++.+.|..++..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhc
Q 008730 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~ 139 (556)
..++|.+++|+-+|.+|++.+|.+.+.....+.++.+.|.. ..|+.
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~--~~Am~ 262 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL--KRAME 262 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH--HHHHH
Confidence 99999999999999999999999999999999999988874 44444
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.97 E-value=9.9e-09 Score=96.86 Aligned_cols=129 Identities=18% Similarity=0.249 Sum_probs=118.6
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
+|..... ..++..+...|+-+.++.+..++...+|.+......+|..+.+.|+|.+|+..++++..++|+++++|..+|
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 4555566 889999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
.+|.+.|+.++|...|.+++++.|.++.+..+++..+...|+ ++.|..+.
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd--~~~A~~ll 191 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD--LEDAETLL 191 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC--HHHHHHHH
Confidence 999999999999999999999999999999999999988887 45554444
No 104
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.97 E-value=1.9e-08 Score=98.48 Aligned_cols=109 Identities=15% Similarity=0.059 Sum_probs=98.9
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---ChHHHH
Q 008730 14 AEELKALANEA-FRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYY 86 (556)
Q Consensus 14 a~~~~~lg~~~-~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~ 86 (556)
....+..|..+ ++.|+|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|++++...|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 47778888876 67899999999999999999998 579999999999999999999999999999887 488999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 122 (556)
.+|.++..+|++++|+..|+++++..|+...+....
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~ 257 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQ 257 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 999999999999999999999999999988655443
No 105
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.97 E-value=2.2e-09 Score=81.75 Aligned_cols=63 Identities=24% Similarity=0.356 Sum_probs=33.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 008730 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (556)
Q Consensus 19 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 81 (556)
.+|..++..|+|++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555555555555555555555555555555555555555555555555555555555544
No 106
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.97 E-value=1.2e-08 Score=117.51 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=118.2
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
..+..+..+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..+++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 199 (899)
T TIGR02917 120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199 (899)
T ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
|.++...|++++|+..|+++++.+|++..++..++.++...++ +++|....
T Consensus 200 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~--~~~A~~~~ 250 (899)
T TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGE--FEEAEKHA 250 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence 9999999999999999999999999999999999888877776 45554433
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.96 E-value=9.2e-09 Score=113.61 Aligned_cols=112 Identities=11% Similarity=0.008 Sum_probs=106.3
Q ss_pred CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
.+..|+.+++...++.++.+.+++++|+..+++++..+|+++.+++.+|.++.++|+|++|+..|++++..+|+++.++.
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~ 192 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV 192 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 118 (556)
.+|.++...|+.++|...|++|++...+-...
T Consensus 193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 193 GWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 99999999999999999999999997655544
No 108
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.95 E-value=2.5e-09 Score=81.40 Aligned_cols=65 Identities=28% Similarity=0.501 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730 52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (556)
Q Consensus 52 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 116 (556)
+.+|..+++.|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999975
No 109
>PRK09453 phosphodiesterase; Provisional
Probab=98.93 E-value=2.5e-09 Score=99.60 Aligned_cols=69 Identities=23% Similarity=0.271 Sum_probs=54.5
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCC--------hHHHHHHHHhccccCCCeEEEecccccc
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSF--------SVEVILTLFAFKCMCPSAIYLSRGNHES 364 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~--------s~e~l~~l~~lk~~~p~~v~~lrGNHE~ 364 (556)
+||.|+||+||++..+.++++.+... ..+.+|++||++|+|+. ..+++..+..+. ..+++++||||.
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~-~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~----~~v~~V~GNhD~ 75 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQS-GADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYA----DKIIAVRGNCDS 75 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhc-CCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcC----CceEEEccCCcc
Confidence 46899999999999999988876433 34679999999999874 467777775542 468999999997
Q ss_pred cc
Q 008730 365 KS 366 (556)
Q Consensus 365 ~~ 366 (556)
..
T Consensus 76 ~~ 77 (182)
T PRK09453 76 EV 77 (182)
T ss_pred hh
Confidence 53
No 110
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=98.91 E-value=1.8e-09 Score=96.70 Aligned_cols=142 Identities=38% Similarity=0.495 Sum_probs=117.6
Q ss_pred cccccCchhhHHhhhhHH-HHHH---HHHHhcccccccccCC-eEEEEecccccCCC-CChhhhhhcccCC--CCCCccc
Q 008730 367 MNKIYGFEGEVRSKLSET-FVEL---FAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDG-VKLSDIKTIDRFC--EPPEEGL 438 (556)
Q Consensus 367 ~~~~~g~~~~~~~~~~~~-~~~~---~~~~~~~lP~~~~i~~-~~~~vHgGi~~~~~-~~~~~i~~~~r~~--~~~~~~~ 438 (556)
++..+|+..++...++.. .|.. +.++|+.+|+.+.+.+ .++|.|||+ ++.. ..+.+++.+.|.. .....+.
T Consensus 3 l~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~g~ 81 (155)
T COG0639 3 LTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGL-SPGLDRLLDIIEVLDRLRACEVPHAGH 81 (155)
T ss_pred hhhhhchhHHhhhhcCCceeeeeccchhhHHHhhhHHHHhcCCceeeecCCC-CcchhhhHHHHHHHhhhhcccCCCccc
Confidence 445567777766666554 5655 8999999999999988 899999998 6643 6778888887775 6677778
Q ss_pred hhhhhcCCCCC--CCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCC
Q 008730 439 MCELLWSDPQP--LPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYC 510 (556)
Q Consensus 439 ~~~llw~dp~~--~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~ 510 (556)
..+.+|++|.. ...|.+.++|.+..| ++....|+..+..+.+.|+|..+..++...+.+..+|+||+++||
T Consensus 82 ~~~~~~~~~~~~~~~~w~~~~~g~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 82 THDLLWSDPDGGDRRIWNPGPRGVPRDG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred cccccCCCCCCCcccccccCCCCCCccc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 88889999885 578999999998777 788899998888888999999999999988887899999999987
No 111
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.3e-09 Score=106.39 Aligned_cols=134 Identities=24% Similarity=0.325 Sum_probs=121.7
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------------VYYANRAFAHTKLEEYGSAIQDASKAI 75 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~------------~a~~~lg~~~~~~g~~~~A~~~~~~al 75 (556)
..++.++.+++..|.+++...+.+.|+..|+++|+++|++. ..|...|.-.++.|+|.+|.+.|..+|
T Consensus 197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred hcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 34677889999999999999999999999999999999874 347778999999999999999999999
Q ss_pred HhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730 76 EIDPRY----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (556)
Q Consensus 76 ~l~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~ 143 (556)
.++|++ ...|.++|.+..++|+.++|+..++.|++++|....++...+.|+..+++ +++|++.+++
T Consensus 277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~--~e~AV~d~~~ 346 (486)
T KOG0550|consen 277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK--WEEAVEDYEK 346 (486)
T ss_pred cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 999986 56799999999999999999999999999999999999999999999988 7888776653
No 112
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=1.3e-08 Score=101.86 Aligned_cols=123 Identities=18% Similarity=0.163 Sum_probs=115.2
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
.+..++.++.+.|+..+..|++++|.+.|++||.-+....+++++.|..+..+|+.++|+++|-+.-.+--++.++++.+
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qi 564 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI 564 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34456778888999999999999999999999999999999999999999999999999999999877777889999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
+.+|..+.+..+|+++|.++..+-|+++.++..++.+|.+.|.
T Consensus 565 aniye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999998876
No 113
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.87 E-value=5e-08 Score=94.31 Aligned_cols=121 Identities=21% Similarity=0.294 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
-...++..+..+|....+|++|++..++...+.+.. +..+..+|..+....+.+.|+..+.+|++.+|+.+.+-.
T Consensus 139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi 218 (389)
T COG2956 139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI 218 (389)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh
Confidence 344567777778888888888888888877777664 456777787777777888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhh
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECEKAVKKL 132 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~l~~~~~~~~~~ 132 (556)
.+|.++...|+|+.|++.|+++++.+|+. +.+...+..||..+|+.
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 88888888888888888888888888775 45677777777777774
No 114
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.86 E-value=5.7e-08 Score=109.36 Aligned_cols=133 Identities=11% Similarity=0.024 Sum_probs=109.2
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
-.|..++..+..+...++.|++++|+..|+++++.+|.++.+...++.++...|+.++|+.++++++.-+|.....+..+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 34667888999999999999999999999999999999965544888888899999999999999993333344444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~ 143 (556)
|.++..+|++++|++.|+++++.+|+++.++..++.++...++ .++|++...+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q--~~eAl~~l~~ 161 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR--GGVVLKQATE 161 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC--HHHHHHHHHH
Confidence 7799999999999999999999999999999888777777665 5666665543
No 115
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.86 E-value=5.6e-09 Score=104.33 Aligned_cols=129 Identities=24% Similarity=0.350 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELN--SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.....+......+...++++++...++++.... +.++..|..+|.++.+.|+.++|+..|+++++++|+++.+...++
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~ 187 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA 187 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345666677788889999999999999977655 678889999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.++...|+++++...++...+..|+++..+..++.++..+|+ +++|+..++
T Consensus 188 ~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~--~~~Al~~~~ 238 (280)
T PF13429_consen 188 WLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR--YEEALEYLE 238 (280)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---HHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--ccccccccc
Confidence 999999999999999988888888888899999999999988 678877776
No 116
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.85 E-value=2.6e-08 Score=95.12 Aligned_cols=109 Identities=21% Similarity=0.273 Sum_probs=72.3
Q ss_pred cceEeccCCCCHHHHH-HHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccccc---
Q 008730 294 HFTVCGDVHGQFYDLL-NIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNK--- 369 (556)
Q Consensus 294 ~i~vigDiHG~~~~l~-~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~--- 369 (556)
+|+++|||||++.... +.++.. ..|.+|++||+++ .+.+++..|..+. ..++.++||||.+....
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~----~pD~Vl~~GDi~~---~~~~~~~~l~~l~----~p~~~V~GNHD~~~~~~~~~ 70 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLL----QPDLVLFVGDFGN---ESVQLVRAISSLP----LPKAVILGNHDAWYDATFRK 70 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhcc----CCCEEEECCCCCc---ChHHHHHHHHhCC----CCeEEEcCCCcccccccccc
Confidence 5899999999987643 344432 2357999999986 4677777776653 35889999999765321
Q ss_pred -c----------------cC------------------------c-hhhHHhhhh-HHHHHHHHHHhcccccccccCCeE
Q 008730 370 -I----------------YG------------------------F-EGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKV 406 (556)
Q Consensus 370 -~----------------~g------------------------~-~~~~~~~~~-~~~~~~~~~~~~~lP~~~~i~~~~ 406 (556)
. ++ + ..++...|+ ....+.+...++.++.+......|
T Consensus 71 k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~V 150 (238)
T cd07397 71 KGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDLPLI 150 (238)
T ss_pred hHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeE
Confidence 0 00 0 113444452 356667778888886444445589
Q ss_pred EEEeccc
Q 008730 407 FVVHGGL 413 (556)
Q Consensus 407 ~~vHgGi 413 (556)
|+.|+++
T Consensus 151 liaH~~~ 157 (238)
T cd07397 151 LLAHNGP 157 (238)
T ss_pred EEeCcCC
Confidence 9999987
No 117
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.85 E-value=1.8e-08 Score=88.92 Aligned_cols=118 Identities=21% Similarity=0.283 Sum_probs=79.8
Q ss_pred cceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChH--HHHHHHHhccccCCCeEEEeccccccccccccc
Q 008730 294 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV--EVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY 371 (556)
Q Consensus 294 ~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~--e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~ 371 (556)
+|.+|||+||++. .+ .. ...+.+|++||++++|..+. +++.++..++ .| .+++++||||....
T Consensus 1 ~i~~isD~H~~~~----~~---~~-~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNHD~~~~---- 65 (135)
T cd07379 1 RFVCISDTHSRHR----TI---SI-PDGDVLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNHDLTLD---- 65 (135)
T ss_pred CEEEEeCCCCCCC----cC---cC-CCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCCCCcCC----
Confidence 4889999999987 11 22 23567999999999986532 3555555443 22 36789999996421
Q ss_pred CchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCC
Q 008730 372 GFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLP 451 (556)
Q Consensus 372 g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~ 451 (556)
.-+.+++++||.+ .+.. +..+.
T Consensus 66 -----------------------------~~~~~ilv~H~~p-~~~~----------------------~~~~~------ 87 (135)
T cd07379 66 -----------------------------PEDTDILVTHGPP-YGHL----------------------DLVSS------ 87 (135)
T ss_pred -----------------------------CCCCEEEEECCCC-CcCc----------------------ccccc------
Confidence 1255799999854 1100 00000
Q ss_pred CCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCce
Q 008730 452 GRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE 493 (556)
Q Consensus 452 ~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~ 493 (556)
....|...+.+++++.+.+++|-||.-.+.|+.
T Consensus 88 ---------~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~ 120 (135)
T cd07379 88 ---------GQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE 120 (135)
T ss_pred ---------CcccCCHHHHHHHHHHCCcEEEEcCcCCcCcee
Confidence 124677888999999999999999999888876
No 118
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.3e-08 Score=90.53 Aligned_cols=110 Identities=25% Similarity=0.316 Sum_probs=98.6
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHhhCHHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQN----------AVYYANRAFAHTKLEEYGSAIQDA 71 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~----------~~a~~~lg~~~~~~g~~~~A~~~~ 71 (556)
.-.....+...|+.+++.|+|.+|...|+.|+.. .|.+ ...+.|.++|+...|+|-++++.+
T Consensus 174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~ 253 (329)
T KOG0545|consen 174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHC 253 (329)
T ss_pred hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHH
Confidence 3445678899999999999999999999999854 3443 456889999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730 72 SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (556)
Q Consensus 72 ~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 119 (556)
..++..+|.|..+||.+|.++...-+.++|.+.|.++|+++|.-..+-
T Consensus 254 seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 254 SEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 999999999999999999999999999999999999999999876654
No 119
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.83 E-value=2.1e-08 Score=106.61 Aligned_cols=120 Identities=17% Similarity=0.092 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 93 (556)
-..|...+..+...+.-++|..++.++-.++|..+..|+..|.++...|++++|.+.|..|+.+||+++....-+|.++.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 35566777888888888888888899999999989999999999999999999999999999999999989999999999
Q ss_pred HcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 008730 94 AMGKFKEALK--DFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133 (556)
Q Consensus 94 ~~g~~~~A~~--~~~~al~l~p~~~~~~~~l~~~~~~~~~~~ 133 (556)
..|+..-|.+ .+..|++++|.++++|+.+|.+...+|+.+
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 9888777777 888899999999999999999888888754
No 120
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.83 E-value=2.1e-07 Score=78.28 Aligned_cols=103 Identities=27% Similarity=0.339 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----hHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYYRRG 89 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg 89 (556)
...+-..|..+...|+.+.|++.|.+++.+-|..+.+|++++.++.-.|+.++|++.+++|+++.... -.++..+|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 45566778999999999999999999999999999999999999999999999999999999996554 35789999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDP 116 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~ 116 (556)
.+|..+|+-+.|...|+.|.++.....
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 999999999999999999999876543
No 121
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.5e-08 Score=102.74 Aligned_cols=119 Identities=22% Similarity=0.304 Sum_probs=106.1
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN----SQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~----p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 81 (556)
-.|..+-.+..+|.+++..+.|.+|+.+|+.++..- ++ -...+.++|.++.+++++++|+..|++++.+.|.+
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 456677788999999999999999999999999432 22 24568999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (556)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~ 127 (556)
+.++-.+|.+|..+|+++.|+++|.+||.++|++..+-..|+.+..
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888777776543
No 122
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.82 E-value=6.3e-08 Score=110.10 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=119.8
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
..+-+.........++.-.|++++|+..|.++...+|..+.++..+|.++...|++++|+..|+++++++|.++.++..+
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 44555666777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
|.++...|++++|+..++++++..|++.. +..++.++...++ .++|+..+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~--~~~Al~~l~ 140 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR--HWDELRAMT 140 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC--HHHHHHHHH
Confidence 99999999999999999999999999999 9999999988877 566666655
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.82 E-value=3.3e-08 Score=110.21 Aligned_cols=138 Identities=13% Similarity=0.112 Sum_probs=121.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 008730 1 MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (556)
Q Consensus 1 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 80 (556)
|+.....+-+|....++..+...+...+++++|+..++.+++..|+...+|+.+|.++.+.+++.+|... .++..-+.
T Consensus 18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~ 95 (906)
T PRK14720 18 WTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ 95 (906)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence 4556677888999999999999999999999999999999999999999999999999999988887666 66665555
Q ss_pred Ch-------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 81 YP-------------------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 81 ~~-------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
+. .+++.+|.||.++|++++|...|+++++++|+|+.+.+++|-.+... + .++|.++.
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d--L~KA~~m~ 172 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D--KEKAITYL 172 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h--HHHHHHHH
Confidence 55 89999999999999999999999999999999999999999988877 4 56666654
Q ss_pred CC
Q 008730 142 ES 143 (556)
Q Consensus 142 ~~ 143 (556)
.+
T Consensus 173 ~K 174 (906)
T PRK14720 173 KK 174 (906)
T ss_pred HH
Confidence 43
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.6e-07 Score=88.11 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
|.+.+...-.|..+-..|.|++|+++|+..++-+|.+...+-..-.+...+|+-.+|++.+..-++..+.+.++|..++.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 45555666778888899999999999999999999999998888888888999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
+|...|++++|.-+|++.+-+.|-++..+..++.++..+|..
T Consensus 163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~ 204 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGA 204 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999998877764
No 125
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1e-07 Score=92.38 Aligned_cols=112 Identities=15% Similarity=0.063 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---HHHHHHHH
Q 008730 29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK---FKEALKDF 105 (556)
Q Consensus 29 ~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~---~~~A~~~~ 105 (556)
+.++.+.-++.-+..+|++++-|..||.+|+.+|++..|...|++|+++.|++++.+..+|.+++.+.+ ..+|...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 466777888999999999999999999999999999999999999999999999999999998887654 56899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 106 QQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 106 ~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+++++++|.+..+...++..+...++ +++|+...+
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~--~~~A~~~Wq 251 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGD--YAEAAAAWQ 251 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence 99999999999999999999998888 777766554
No 126
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.78 E-value=3.5e-07 Score=99.07 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=105.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (556)
Q Consensus 5 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 84 (556)
+....+|..+.+|+.+|.+|-.+|+.++|+..+-.|-.++|++.+.|..++....++|.++.|.-+|.+|++.+|.+.+.
T Consensus 164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~ 243 (895)
T KOG2076|consen 164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWEL 243 (895)
T ss_pred HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p 113 (556)
.+.++..|.++|++..|...|.+++.+.|
T Consensus 244 ~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 244 IYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999
No 127
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.76 E-value=2.3e-07 Score=88.82 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYR 87 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~ 87 (556)
+...++.|..+++.|+|.+|...|..-++..|++ +.+++.||.+++.+|+|++|...|..+.+-.|+. +++++.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3448999999999999999999999999999986 6789999999999999999999999999988775 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 123 (556)
+|.++..+|+.++|...|+++++..|+...+.....
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 999999999999999999999999999888765444
No 128
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.74 E-value=5.1e-07 Score=78.58 Aligned_cols=108 Identities=27% Similarity=0.363 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYY 86 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~ 86 (556)
.+..++..|...++.|+|++|++.|+......|.. ..+...+|.+|++.++|++|+..+++-++++|.+ ..+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 36789999999999999999999999999998875 5788899999999999999999999999999987 56899
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 008730 87 RRGAAYLAMGK---------------FKEALKDFQQVKKLSPNDPDAAQ 120 (556)
Q Consensus 87 ~lg~~~~~~g~---------------~~~A~~~~~~al~l~p~~~~~~~ 120 (556)
..|.+++.+.. ..+|...|++.++..|++..+-.
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 99999999887 88999999999999999877644
No 129
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.72 E-value=7.5e-08 Score=99.28 Aligned_cols=90 Identities=22% Similarity=0.330 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
+...|..++..|+|++|+..|++|++++|+++.+|+++|.+|..+|++++|+..++++++++|+++.++..++.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhHHHHhcCCC
Q 008730 131 KLKFEEAIAVPE 142 (556)
Q Consensus 131 ~~~~~~Ai~~~~ 142 (556)
+ +++|+..++
T Consensus 85 ~--~~eA~~~~~ 94 (356)
T PLN03088 85 E--YQTAKAALE 94 (356)
T ss_pred C--HHHHHHHHH
Confidence 8 788877766
No 130
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.6e-08 Score=91.40 Aligned_cols=101 Identities=38% Similarity=0.568 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
..+..+...|+.++....|..|+.+|.+|+.++|..+..|.+++.||+++++++.+...+++|++++|+.+.+++.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC
Q 008730 92 YLAMGKFKEALKDFQQVKKLS 112 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~ 112 (556)
+.....+++|+..+.+|..+.
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHhhccccHHHHHHHHHHHHH
Confidence 999999999999999997763
No 131
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=2.5e-08 Score=105.58 Aligned_cols=127 Identities=19% Similarity=0.250 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 93 (556)
+++...+|...+..++|++|..+++.+++++|-....|+.+|.|..++++++.|.++|.+++.++|++.++|.+++.+|.
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 44455556666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..++..+|...+++|++.+-++...|.+...+....+. +++|++.+.
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge--~eda~~A~~ 611 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE--FEDAIKAYH 611 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc--HHHHHHHHH
Confidence 99999999999999999999999999999988888887 677776654
No 132
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.1e-08 Score=101.22 Aligned_cols=135 Identities=19% Similarity=0.175 Sum_probs=125.9
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
+..|+.+-.|+..|..|+..|++++|..+|.||..++|..+.+|...|..+.-.++.++|+.+|..|-++-|..-...+.
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY 385 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY 385 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCCC
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESE 144 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~ 144 (556)
+|.-|.++++++.|.++|.+|+.+.|.++-+...+|.+....+. +.+|...+..+
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~--y~~A~~~f~~~ 440 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEE--YPEALKYFQKA 440 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhh--hHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877666 77777777643
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=3.4e-07 Score=93.46 Aligned_cols=122 Identities=22% Similarity=0.183 Sum_probs=113.0
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
..|+++..+...+.++...++.++|++.+++++.++|..+..+.++|.+|++.|++.+|+..++..+..+|+++..|..+
T Consensus 335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~L 414 (484)
T COG4783 335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLL 414 (484)
T ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHH
Confidence 56788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
|.+|..+|+-.+|...+...+.+......+...+..+..+.+
T Consensus 415 Aqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 415 AQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998887777777776665554
No 134
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.71 E-value=3.3e-07 Score=78.41 Aligned_cols=96 Identities=22% Similarity=0.137 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---ChHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYYRR 88 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l 88 (556)
+++++.|..+-..|+.++|+..|+++++..... ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999986554 578999999999999999999999999999888 78888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 008730 89 GAAYLAMGKFKEALKDFQQVKK 110 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~ 110 (556)
+.++...|++++|+..+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988875
No 135
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.71 E-value=8e-08 Score=74.82 Aligned_cols=65 Identities=32% Similarity=0.632 Sum_probs=34.8
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008730 56 FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (556)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 120 (556)
.+|.+.+++++|++.+++++.++|+++..++.+|.++..+|++++|+..|+++++..|+++.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555544443
No 136
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.70 E-value=9.1e-08 Score=74.50 Aligned_cols=70 Identities=23% Similarity=0.436 Sum_probs=65.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 21 ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 21 g~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
..+|...++|++|+++++++++++|.++.+|..+|.++.++|++++|+..++++++.+|+++.+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5688999999999999999999999999999999999999999999999999999999999888766554
No 137
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.69 E-value=9e-07 Score=86.10 Aligned_cols=126 Identities=18% Similarity=0.219 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY---ANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGY 85 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~---~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~ 85 (556)
..++.++..|..++..|+|++|++.|++++...|..+.+. +.+|.++++.++|++|+..+++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4577899999999999999999999999999999986554 889999999999999999999999999886 5689
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHhhhhHHHH
Q 008730 86 YRRGAAYLAMG---------------K---FKEALKDFQQVKKLSPNDPD---AAQKVKECEKAVKKLKFEEA 137 (556)
Q Consensus 86 ~~lg~~~~~~g---------------~---~~~A~~~~~~al~l~p~~~~---~~~~l~~~~~~~~~~~~~~A 137 (556)
+.+|.++..++ + ..+|+..|++.++..|+... +...+..+...+.+.++.-|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999875554 1 35788999999999998754 45555566666655444333
No 138
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.69 E-value=5.2e-08 Score=74.73 Aligned_cols=64 Identities=27% Similarity=0.458 Sum_probs=34.4
Q ss_pred HhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730 60 KLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (556)
Q Consensus 60 ~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 123 (556)
+.|++++|+..|+++++.+|++..+++.+|.+|...|++++|...+++++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 4455555555555555555555555555555555555555555555555555555544444443
No 139
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.68 E-value=5e-08 Score=74.84 Aligned_cols=68 Identities=21% Similarity=0.216 Sum_probs=62.4
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 24 AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 24 ~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
++..|+|++|+..|++++..+|++..++..+|.+|++.|++++|...+++++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999998888777653
No 140
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.68 E-value=2.2e-07 Score=98.28 Aligned_cols=135 Identities=19% Similarity=0.245 Sum_probs=112.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (556)
Q Consensus 6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 77 (556)
..+..|........+|..|..+|+|++|+..+++|++. .|.-......+|..|..+++|.+|+..|++|+.+
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999998 5555666667999999999999999999999976
Q ss_pred --------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 78 --------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-----PNDPD---AAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 78 --------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----p~~~~---~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
+|....++.+||.+|...|++++|..++++|+++. ...++ .+..++.++..+++ +++|..++
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~--~Eea~~l~ 348 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE--YEEAKKLL 348 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc--hhHHHHHH
Confidence 45567799999999999999999999999999984 23333 44555556655555 77777776
Q ss_pred C
Q 008730 142 E 142 (556)
Q Consensus 142 ~ 142 (556)
.
T Consensus 349 q 349 (508)
T KOG1840|consen 349 Q 349 (508)
T ss_pred H
Confidence 5
No 141
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.67 E-value=2.7e-07 Score=94.55 Aligned_cols=72 Identities=25% Similarity=0.272 Sum_probs=55.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY---YANRAFAHTKLEEYGSAIQDASKAIEI 77 (556)
Q Consensus 6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a---~~~lg~~~~~~g~~~~A~~~~~~al~l 77 (556)
.+..+|+.+.+++++|.+++..|+|++|+..|++|++++|++..+ |+++|.+|..+|++++|++++++|+++
T Consensus 67 ~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 67 GSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667777778888888888888888888888888888877744 777888887788888888888887776
No 142
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.67 E-value=4.5e-07 Score=97.49 Aligned_cols=127 Identities=14% Similarity=0.059 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--------CHHHHHHHHHHHHHh--CC
Q 008730 13 RAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--------EYGSAIQDASKAIEI--DP 79 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~---~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g--------~~~~A~~~~~~al~l--~p 79 (556)
.+-.++..|..++..++ +++|+.+|++|++++|+++.++-.++.+|.... +...|.+..++++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 45667778888877655 889999999999999999999999998886642 345666777776664 77
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.++.++.-+|..+...|++++|...+++|++++| +..++..++.++...|+ .++|++.+.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~--~~eA~~~~~ 477 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD--NRLAADAYS 477 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 7889999999999999999999999999999999 58899999999999998 688877776
No 143
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.66 E-value=2.3e-07 Score=101.16 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=93.0
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
.+..++.++.+|..+..+|+|++|..+|.+++..+|++ .-.++.+|+.|++.|+++.|+.+|+++++..|++.++..-+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 34556778888888888888888888888888888777 66777788888888888888888888888888888888888
Q ss_pred HHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730 89 GAAYLAMG----KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (556)
Q Consensus 89 g~~~~~~g----~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 129 (556)
|.+|...+ ..+.|.....++++..|.+.+++..++.++...
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 88777765 567778888888888888777777777666543
No 144
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=6.2e-07 Score=86.86 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=94.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-hHH
Q 008730 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-PKG 84 (556)
Q Consensus 6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~ 84 (556)
..+-....++.+++++..+....+.++|...+.+|++.+|++..+-..+|.+++..|+|+.|++.++.+++.||+. +++
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 3444556788888888888888888888888888888888888888888888888888888888888888888886 667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 118 (556)
.-.+..||..+|+.++.+..+.++.+..++....
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 8888888888888888888888888887764433
No 145
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.65 E-value=4.8e-07 Score=96.57 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=102.4
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHH--HHHHHHHhCCCChHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ--DASKAIEIDPRYPKGYY 86 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~--~~~~al~l~p~~~~~~~ 86 (556)
-.+-.+..|+..|..+...|++++|.+.|..|+.++|+++.....+|.++.+.|+..-|.. .+..++++||.++++|+
T Consensus 679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~ 758 (799)
T KOG4162|consen 679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY 758 (799)
T ss_pred cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence 3466678899999999999999999999999999999999999999999999999888888 99999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 116 (556)
++|.++.++|+.++|.++|..|+++++.+|
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999999999999999999999999998876
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=9.2e-07 Score=83.07 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=112.1
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
+.+|.+.-.+...-.+...+|+--+|++.+.+-++..+.+.++|..++..|...|+|++|.-++++.+-++|-++..+.+
T Consensus 114 ~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~r 193 (289)
T KOG3060|consen 114 EDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQR 193 (289)
T ss_pred ccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 45677777788888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 88 RGAAYLAMGK---FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 88 lg~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
+|.+++-+|. +.-|.++|.++++++|.+..+++.+-.+-..+.+
T Consensus 194 lae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~ 240 (289)
T KOG3060|consen 194 LAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ 240 (289)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence 9999998875 6679999999999999988888887777665554
No 147
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.64 E-value=6.9e-07 Score=85.24 Aligned_cols=71 Identities=8% Similarity=0.133 Sum_probs=56.0
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccc
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 365 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 365 (556)
++|.+++||||++..+.++++..... .-+.+|++||++++|+..-++..++..+... +..++.++||||..
T Consensus 5 ~kIl~iSDiHgn~~~le~l~~~~~~~-~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l-~~pv~~V~GNhD~~ 75 (224)
T cd07388 5 RYVLATSNPKGDLEALEKLVGLAPET-GADAIVLIGNLLPKAAKSEDYAAFFRILGEA-HLPTFYVPGPQDAP 75 (224)
T ss_pred eEEEEEEecCCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc-CCceEEEcCCCChH
Confidence 57999999999999999999865322 3457999999999997776777666666422 24689999999964
No 148
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.64 E-value=1.6e-06 Score=82.08 Aligned_cols=126 Identities=24% Similarity=0.310 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGY 85 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~ 85 (556)
..++.++..|..++..|+|.+|+..|++.+...|.. ..+.+.+|.++++.|+|++|+..+++.++..|++ +.++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 357889999999999999999999999999998876 5789999999999999999999999999999986 4689
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHhhhhHHHH
Q 008730 86 YRRGAAYLAMG-----------KFKEALKDFQQVKKLSPNDPD---AAQKVKECEKAVKKLKFEEA 137 (556)
Q Consensus 86 ~~lg~~~~~~g-----------~~~~A~~~~~~al~l~p~~~~---~~~~l~~~~~~~~~~~~~~A 137 (556)
+.+|.+++.+. ...+|+..|+..++..|+.+. +...+..+...+.+.++.-|
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987653 345899999999999999854 44555566655555544444
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.63 E-value=4.4e-07 Score=81.15 Aligned_cols=128 Identities=23% Similarity=0.178 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGY 85 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~ 85 (556)
..+...+.........++...+...+++.++.+|+. ..+.+.+|.+++..|++++|+..|++++...|+. ..+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 345566777777778999999999999999999998 5678889999999999999999999999987664 4588
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+++|.++...|++++|+..++.. .-.+-.+.++..+|.++...|+ +++|+..++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~--~~~A~~~y~ 142 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGD--YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 89999999999999999999763 3344456778889999988887 677776554
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.62 E-value=4.6e-07 Score=72.60 Aligned_cols=90 Identities=31% Similarity=0.494 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (556)
Q Consensus 50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 129 (556)
+++.+|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|++.++++++..|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhHHHHhcCC
Q 008730 130 KKLKFEEAIAVP 141 (556)
Q Consensus 130 ~~~~~~~Ai~~~ 141 (556)
++ +++|....
T Consensus 82 ~~--~~~a~~~~ 91 (100)
T cd00189 82 GK--YEEALEAY 91 (100)
T ss_pred Hh--HHHHHHHH
Confidence 77 55655443
No 151
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.5e-07 Score=92.07 Aligned_cols=112 Identities=20% Similarity=0.140 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
.++..|+--|...+..++|+.|+.+-.++++.+|++.+++...|.++..+++.++|+-+|+.|..+.|...+.|-.+-.+
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 44666788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 123 (556)
|...|+..||...-+.+++.-|.+..++..++
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 99999888888777777777777777776665
No 152
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.62 E-value=5.6e-07 Score=80.71 Aligned_cols=97 Identities=22% Similarity=0.259 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--
Q 008730 30 YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE----------YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-- 97 (556)
Q Consensus 30 ~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-- 97 (556)
|+.|.+.++.....+|.+++++++-|.++.++.+ +++|+.-|++|+.++|+..++++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 7889999999999999999999999999888744 6789999999999999999999999999987764
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730 98 ---------FKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (556)
Q Consensus 98 ---------~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 126 (556)
+++|..+|++|...+|++......|..+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 78899999999999999988877776653
No 153
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.62 E-value=3.6e-07 Score=83.87 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=92.9
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCH
Q 008730 24 AFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKF 98 (556)
Q Consensus 24 ~~~~g~~~~Al~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~ 98 (556)
++-.+.|..+...+.+.++.++.+ ..+++.+|.++..+|++++|+..|++++.+.|+. +.+++++|.++...|++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 344556777777787766666666 6678999999999999999999999999997763 46899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 99 ~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
++|++.|++++++.|.+...+..++.++..+++
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGE 121 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999885553
No 154
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.61 E-value=1.6e-07 Score=96.09 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=66.7
Q ss_pred hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730 43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG---YYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (556)
Q Consensus 43 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~l~ 112 (556)
.+|+++.+|+++|.+|.++|+|++|+..|++|++++|++..+ |+++|.+|..+|++++|++++++|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 478899999999999999999999999999999999999865 9999999999999999999999999983
No 155
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.7e-07 Score=88.66 Aligned_cols=110 Identities=30% Similarity=0.482 Sum_probs=99.1
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 85 (556)
....|+.+...|+.|++.++|..|...|.++|+..-.+ +..|.|+|.|...+|+|..|+.++.+|+.++|.+..++
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~ 156 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAY 156 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhh
Confidence 34468889999999999999999999999999986443 56799999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 119 (556)
++-|.|+..+.++++|..+++..+.++.+...+.
T Consensus 157 ~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 157 IRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 9999999999999999999999988876554443
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.61 E-value=1.1e-06 Score=78.44 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
+....+.+.+|..++..|++++|+..|+++++..|+. ..++..+|.++...|++++|+..++. +.-.+-.+.++..
T Consensus 45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~ 123 (145)
T PF09976_consen 45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAEL 123 (145)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHH
Confidence 3457888899999999999999999999999988665 46788999999999999999999976 3344456778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 008730 88 RGAAYLAMGKFKEALKDFQQVK 109 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al 109 (556)
+|.+|...|++++|+..|++|+
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999999885
No 157
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.60 E-value=1.5e-06 Score=80.32 Aligned_cols=109 Identities=18% Similarity=0.296 Sum_probs=74.1
Q ss_pred cceEeccCC-CCHH-----HHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccc
Q 008730 294 HFTVCGDVH-GQFY-----DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 367 (556)
Q Consensus 294 ~i~vigDiH-G~~~-----~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~ 367 (556)
+|.||||+| |.-. .+.++++. ..-+.+|.+||+++ .+++.++..+. ..++.++||||...
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~----~~~d~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~D~~~- 66 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVP----GKIQHVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDFDENL- 66 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhcc----CCCCEEEECCCCCC-----HHHHHHHHhhC----CceEEEECCCCccc-
Confidence 378999999 6543 35555543 23457999999986 77777776653 25899999999631
Q ss_pred ccccCchhhHHhhhhHHHHHHHHHHhccccccccc---CCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhc
Q 008730 368 NKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLW 444 (556)
Q Consensus 368 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw 444 (556)
.+|....+ +.+++++||.... .|
T Consensus 67 ---------------------------~lp~~~~~~~~g~~i~l~HG~~~~---------------------------~~ 92 (178)
T cd07394 67 ---------------------------NYPETKVITVGQFKIGLIHGHQVV---------------------------PW 92 (178)
T ss_pred ---------------------------cCCCcEEEEECCEEEEEEECCcCC---------------------------CC
Confidence 35554433 4589999984200 00
Q ss_pred CCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccc
Q 008730 445 SDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKD 489 (556)
Q Consensus 445 ~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~ 489 (556)
. +.+.+..+.+..+.+++|-||+-.+
T Consensus 93 ~-------------------~~~~~~~~~~~~~~dvii~GHTH~p 118 (178)
T cd07394 93 G-------------------DPDSLAALQRQLDVDILISGHTHKF 118 (178)
T ss_pred C-------------------CHHHHHHHHHhcCCCEEEECCCCcc
Confidence 0 1345566677889999999999865
No 158
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.58 E-value=4.6e-07 Score=94.97 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 93 (556)
-.+++..+.-.+..++|.+.+...++.|+-.|++++.+...|..+..+|+-++|....+.++..|+.+.-.|..+|.++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 34567777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
...+|++|+++|+.|+.++|+|...++.++.++.+++..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777766666654
No 159
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.56 E-value=9e-07 Score=99.81 Aligned_cols=119 Identities=15% Similarity=0.187 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
.....+..+|..+...|+|++|++.|+++++.+|+++.++..++.++...++.++|++.+++++..+|.+... ..++.+
T Consensus 100 ~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL 178 (822)
T PRK14574 100 ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYL 178 (822)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHH
Confidence 3345555557777888888888888888888888888888777788888888888888888888888875444 445555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
+...++..+|++.|+++++.+|++.+++..+..+....+-
T Consensus 179 ~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 179 NRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred HHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 5556677668888888888888888887777777666665
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.56 E-value=4.3e-07 Score=77.56 Aligned_cols=93 Identities=31% Similarity=0.395 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 008730 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQK 121 (556)
Q Consensus 48 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~ 121 (556)
+..++.+|..+.+.|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999886 5799999999999999999999999999999886 578889
Q ss_pred HHHHHHHHhhhhHHHHhcCCC
Q 008730 122 VKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 122 l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++.++..+++ +++|+..+.
T Consensus 82 ~~~~~~~~~~--~~~A~~~~~ 100 (119)
T TIGR02795 82 LGMSLQELGD--KEKAKATLQ 100 (119)
T ss_pred HHHHHHHhCC--hHHHHHHHH
Confidence 9999888777 566665554
No 161
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=4.8e-07 Score=87.60 Aligned_cols=131 Identities=13% Similarity=0.225 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
..++.+..++.+|.+..+...|+..|.+.++..|.+...+...+.++..++++++|++.|+.+++++|.+.++.-..|.-
T Consensus 254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG 333 (478)
T ss_pred CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence 34566777788888888888888888888888888888888888899999999999999999999999999998888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh-----HHHHhcCCC
Q 008730 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-----FEEAIAVPE 142 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~-----~~~Ai~~~~ 142 (556)
|+..++.+-|+.+|++.|++.-.+++.+.+++.|....++.+ ++.|+....
T Consensus 334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 999999999999999999999999999999999888777754 555555443
No 162
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.54 E-value=8.4e-07 Score=91.64 Aligned_cols=129 Identities=18% Similarity=0.205 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH----HhCCCChHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI----EIDPRYPKGYYR 87 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al----~l~p~~~~~~~~ 87 (556)
+..+.....+..+...|++++|+..++++++.+|++..++.. +..+...+++..+.....+++ ..+|....++..
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 119 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM 119 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence 445667788999999999999999999999999999887775 555555554444444444444 456677778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~ 143 (556)
+|.++...|++++|+..+++++++.|++..++..++.++...++ +++|+....+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~--~~eA~~~l~~ 173 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR--FKEGIAFMES 173 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHh
Confidence 88899999999999999999999999998888888888888777 6777776653
No 163
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.54 E-value=6.3e-07 Score=97.79 Aligned_cols=135 Identities=19% Similarity=0.170 Sum_probs=117.7
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-hH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNS---QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-PK 83 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~ 83 (556)
.+++.++.++..+++.++..|+|+.+...+..++...- --++.++++|.+|+.+|+|++|..+|.++++.+|++ .-
T Consensus 264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l 343 (1018)
T KOG2002|consen 264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL 343 (1018)
T ss_pred hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc
Confidence 34567788899999999999999999999999998753 345679999999999999999999999999999998 88
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh--hhHHHHhcCCC
Q 008730 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK--LKFEEAIAVPE 142 (556)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~--~~~~~Ai~~~~ 142 (556)
+++.+|+.|...|+++.|+.+|++.++..|++.+....+|.+|...++ ...++|..+..
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887741 22455555444
No 164
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.54 E-value=2.6e-07 Score=100.72 Aligned_cols=132 Identities=22% Similarity=0.242 Sum_probs=113.1
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH------------------------------------HH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY------------------------------------YA 52 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a------------------------------------~~ 52 (556)
-++.-+.++..+|..|...-|...|..+|++|.++|+.++.+ |.
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 456678888999999998889999999999999999887544 55
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 53 NRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 53 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
.+|..|.+.+++.+|+..++.|++.+|++..+|..+|.+|...|++..|++.|.+|..++|.+..+.+..+.....+|+
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk- 645 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK- 645 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh-
Confidence 5777777777888889999999999999999999999999999999999999999999999999998888888887777
Q ss_pred hHHHHhcCCC
Q 008730 133 KFEEAIAVPE 142 (556)
Q Consensus 133 ~~~~Ai~~~~ 142 (556)
|.+|+....
T Consensus 646 -Ykeald~l~ 654 (1238)
T KOG1127|consen 646 -YKEALDALG 654 (1238)
T ss_pred -HHHHHHHHH
Confidence 666665543
No 165
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=5.9e-07 Score=82.29 Aligned_cols=115 Identities=21% Similarity=0.211 Sum_probs=107.2
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
++...+..++++|..|-..|-+.-|.-.|.+++.+.|.-+.+++.+|.-+...|+|+.|.+.|..++++||.+-.+..++
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 123 (556)
|..++.-|++.-|.+.+.+-.+.+|++|.--..+-
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 99999999999999999999999999986444333
No 166
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.54 E-value=2.6e-06 Score=83.04 Aligned_cols=110 Identities=20% Similarity=0.236 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008730 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (556)
Q Consensus 16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 95 (556)
.+......++..|++..|+++..+.|++.|-++..+..++.||...|+...|+..++.+-++..++.+.+|..+..++..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 34556667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (556)
Q Consensus 96 g~~~~A~~~~~~al~l~p~~~~~~~~l~~~ 125 (556)
|+.+.++...+.+|+++|++...+-.+..+
T Consensus 237 gd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred hhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 999999999999999999988765544443
No 167
>PRK11906 transcriptional regulator; Provisional
Probab=98.53 E-value=1.6e-06 Score=89.04 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=99.9
Q ss_pred CCChhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 008730 8 NSSVSRAEELKALANEAFRA---------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~---------g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 78 (556)
+-+|..+.++..++.+++.. .+-.+|.+..++|++++|.++.++..+|.++...++++.|+..|++|+.++
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~ 368 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS 368 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence 55677788888888777644 356678999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (556)
Q Consensus 79 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 118 (556)
|+.+.+++..|.+....|+.++|++.+++|++++|.-..+
T Consensus 369 Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 369 TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 9999999999999999999999999999999999976544
No 168
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.53 E-value=6.9e-07 Score=77.34 Aligned_cols=118 Identities=25% Similarity=0.342 Sum_probs=81.7
Q ss_pred eEeccCCCCHHHHHHHH--HhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCc
Q 008730 296 TVCGDVHGQFYDLLNIF--ELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 373 (556)
Q Consensus 296 ~vigDiHG~~~~l~~~l--~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~ 373 (556)
+++||+|+......... ..... ...+.+|++||+++.+....+...............++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~-~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD---------- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAA-EKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD---------- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcc-cCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce----------
Confidence 47999999999888764 22222 234679999999999988777665422333345578999999999
Q ss_pred hhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCC
Q 008730 374 EGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGR 453 (556)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~ 453 (556)
++++|+++ .+..... .+..
T Consensus 70 --------------------------------i~~~H~~~-~~~~~~~---------------------~~~~------- 88 (131)
T cd00838 70 --------------------------------ILLTHGPP-YDPLDEL---------------------SPDE------- 88 (131)
T ss_pred --------------------------------EEEeccCC-CCCchhh---------------------cccc-------
Confidence 89999876 2211000 0000
Q ss_pred CcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceE
Q 008730 454 GPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEI 494 (556)
Q Consensus 454 ~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~ 494 (556)
......+...+...+...+|.||.-....+..
T Consensus 89 ---------~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~ 120 (131)
T cd00838 89 ---------DPGSEALLELLEKYGVDLVLSGHTHVYERREP 120 (131)
T ss_pred ---------hhhHHHHHHHHHHhCCCEEEeCCeeccccccC
Confidence 00567888889999999999999987665543
No 169
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.52 E-value=1.1e-06 Score=90.75 Aligned_cols=103 Identities=18% Similarity=0.110 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh----HHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP----KGYY 86 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~ 86 (556)
|.....+..+|..+...|++++|+..++++++++|+++.++..+|.+++..|++++|+..+++++...|..+ ..+.
T Consensus 111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~ 190 (355)
T cd05804 111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWW 190 (355)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHH
Confidence 333444444555555555555555555555555555555555555555555555555555555555544221 2233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSP 113 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p 113 (556)
.+|.++...|++++|+..|++++...|
T Consensus 191 ~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 191 HLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 455555555555555555555544333
No 170
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.51 E-value=3e-06 Score=89.45 Aligned_cols=129 Identities=13% Similarity=0.113 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-HHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-KGYYRRGA 90 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~lg~ 90 (556)
..+......|...+..|++++|.+...++.+..|+....+...|.++.+.|+++.|..++.++.+..|++. .+....+.
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 34666778899999999999999999999999999888888889999999999999999999999999875 56666799
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++...|++++|...+++.++..|+++.++..++.++...++ +++|.+..+
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d--~~~a~~~l~ 211 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA--WQALDDIID 211 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence 99999999999999999999999999999999999988887 677766654
No 171
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1e-06 Score=88.47 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 93 (556)
...+.+++.++.+.++|.+|+..++++|+++|+|..+++.+|.++..+++|+.|+..|++|++++|.|-.+...+..+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HcCCHHHH-HHHHHHHHHhCC
Q 008730 94 AMGKFKEA-LKDFQQVKKLSP 113 (556)
Q Consensus 94 ~~g~~~~A-~~~~~~al~l~p 113 (556)
+..++.+. .+.|.+++..-+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 77766554 677777766543
No 172
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.49 E-value=1.3e-06 Score=92.19 Aligned_cols=128 Identities=15% Similarity=0.065 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh--HHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY--ANRAFAHTKLEEYGSAIQDASKAIEIDPRYP--KGYYR 87 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~--~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~ 87 (556)
+....+..+|..+...|++++|++.++++++..|++.... ..........++.+.+++.++++++.+|+++ ..+..
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 5788899999999999999999999999999999987532 2233334456888999999999999999999 88999
Q ss_pred HHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 88 RGAAYLAMGKFKEALKDFQ--QVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~--~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+|.++++.|++++|.++|+ ++++..|++.. +..++.++..+|+ .++|.++++
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~--~~~A~~~~~ 394 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGD--KAEAAAMRQ 394 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999999999 68888888766 5599999999888 455555544
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.48 E-value=2.2e-06 Score=78.97 Aligned_cols=87 Identities=20% Similarity=0.344 Sum_probs=79.9
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730 45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (556)
Q Consensus 45 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 121 (556)
+..+.+++.+|..+...|++++|+..|+++++..|+. ..+++.+|.++..+|++++|+..++++++..|++..++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3567789999999999999999999999999987764 4699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 008730 122 VKECEKAVKK 131 (556)
Q Consensus 122 l~~~~~~~~~ 131 (556)
++.++..+++
T Consensus 112 lg~~~~~~g~ 121 (172)
T PRK02603 112 IAVIYHKRGE 121 (172)
T ss_pred HHHHHHHcCC
Confidence 9999988776
No 174
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=2.5e-07 Score=89.49 Aligned_cols=124 Identities=14% Similarity=0.151 Sum_probs=76.2
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH----------------------------------HHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY----------------------------------YAN 53 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a----------------------------------~~~ 53 (556)
+.-|.++..+...+.++...+++++|+++|+.+++++|.+.++ +.+
T Consensus 284 d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~N 363 (478)
T KOG1129|consen 284 DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCN 363 (478)
T ss_pred hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhh
Confidence 4456667777788888888888888888888888887776555 455
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 54 RAFAHTKLEEYGSAIQDASKAIEIDP--R-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 54 lg~~~~~~g~~~~A~~~~~~al~l~p--~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
+|.|.+..++++-++..|++|+..-. + -.++||++|.+....|++..|..+|+-||.-+|++.+++.+++.+..+.|
T Consensus 364 igLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 364 IGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSG 443 (478)
T ss_pred HHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcC
Confidence 55555555555555555555554321 1 24455555555555555555555555555555666666666665555555
Q ss_pred h
Q 008730 131 K 131 (556)
Q Consensus 131 ~ 131 (556)
.
T Consensus 444 ~ 444 (478)
T KOG1129|consen 444 D 444 (478)
T ss_pred c
Confidence 4
No 175
>PRK11906 transcriptional regulator; Provisional
Probab=98.47 E-value=1.4e-06 Score=89.54 Aligned_cols=125 Identities=15% Similarity=0.028 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHcc---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHHhCCC
Q 008730 16 ELKALANEAFRAK---KYSQAIDLYSQAI---ELNSQNAVYYANRAFAHTKL---------EEYGSAIQDASKAIEIDPR 80 (556)
Q Consensus 16 ~~~~lg~~~~~~g---~~~~Al~~~~~al---~~~p~~~~a~~~lg~~~~~~---------g~~~~A~~~~~~al~l~p~ 80 (556)
.++..|...+..+ ..+.|+.+|.+|+ +++|..+.+|..++.|+... .+-.+|.+..++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4466777776554 4567899999999 99999999999999998875 2356889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++.++..+|.++...++++.|...|++|+.++|+.+.++...+.+....|+ .++|++..+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~--~~~a~~~i~ 396 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK--IEEARICID 396 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888887 567766554
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.47 E-value=3.5e-06 Score=86.94 Aligned_cols=116 Identities=20% Similarity=0.215 Sum_probs=105.5
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 008730 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101 (556)
Q Consensus 22 ~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A 101 (556)
..+...++++.|++.+++..+.+|+ +...++.++...++..+|++.+.++++.+|.+...+...|..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 4445678999999999999998876 5567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 102 LKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 102 ~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++..++|.++.|++...|..|+.+|..+++ +++|+....
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d--~e~ALlaLN 292 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGD--FENALLALN 292 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCC--HHHHHHHHh
Confidence 999999999999999999999999999998 788876544
No 177
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.5e-06 Score=86.71 Aligned_cols=130 Identities=21% Similarity=0.271 Sum_probs=112.7
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH----------------------------------HHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY----------------------------------YANR 54 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a----------------------------------~~~l 54 (556)
.-+.+...+..+|.+++..|++.+|+..|+++.-++|....+ |+--
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 346778889999999999999999999999999999986443 4445
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhH
Q 008730 55 AFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKF 134 (556)
Q Consensus 55 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 134 (556)
+...+..++|+.|+.+-+++++.+|.+..++...|.++.++++.++|+-.|+.|..+.|.+-+.+..+-.+|...++ +
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~--~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR--F 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch--H
Confidence 55666677888999999999999999999999999999999999999999999999999999999999999888777 5
Q ss_pred HHHhcC
Q 008730 135 EEAIAV 140 (556)
Q Consensus 135 ~~Ai~~ 140 (556)
.||...
T Consensus 385 kEA~~~ 390 (564)
T KOG1174|consen 385 KEANAL 390 (564)
T ss_pred HHHHHH
Confidence 565443
No 178
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.47 E-value=2.6e-06 Score=90.22 Aligned_cols=133 Identities=26% Similarity=0.245 Sum_probs=115.0
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID- 78 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~- 78 (556)
...+.-+..+.+++..+...+++++|+.+|++++++. +.-+..+.++|.+|..+|+|++|.+.|++|+++.
T Consensus 319 ~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 319 ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 4567778889999999999999999999999999873 2346789999999999999999999999999874
Q ss_pred -------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 79 -------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 79 -------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+....++.++|..|.+++++.+|.+.|.++..+. |+-...+.+|+.+|..+|+ +++|+++..
T Consensus 399 ~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~--~e~a~~~~~ 474 (508)
T KOG1840|consen 399 ELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN--YEAAEELEE 474 (508)
T ss_pred hcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence 3346789999999999999999999999998873 4456788999999999999 788877765
No 179
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.46 E-value=3.5e-07 Score=89.18 Aligned_cols=210 Identities=16% Similarity=0.273 Sum_probs=106.2
Q ss_pred CcceEeccCCCCH------HHHHHHHHhcCCCCCCCCeeeecccccC-------CCChHHHHHHHHhccccCCCeEEEec
Q 008730 293 KHFTVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDR-------GSFSVEVILTLFAFKCMCPSAIYLSR 359 (556)
Q Consensus 293 ~~i~vigDiHG~~------~~l~~~l~~~~~~~~~~~~vflGD~vdr-------G~~s~e~l~~l~~lk~~~p~~v~~lr 359 (556)
+++++|+|+|... ..+.+.++... ...+.++++||++|. .+...+++.+|..++.. +-.|++++
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~--~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~v~~v~ 77 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEA--RQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVPCYFMH 77 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhh--ccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCeEEEEe
Confidence 4689999999542 24555554322 234679999999985 23346677777777532 24799999
Q ss_pred ccccccccccccCchhhHHhhhhHHHHHHHHHHhcccc--ccccc-CCeEEEEecccccCCCCChhhhhhcccCCCCCCc
Q 008730 360 GNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLP--LAHVL-NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEE 436 (556)
Q Consensus 360 GNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP--~~~~i-~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~ 436 (556)
||||..... .+.+... +..+| ....+ +.+++++||-............+++-|. +
T Consensus 78 GNHD~~~~~---------------~~~~~~g--~~~l~~~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~--~--- 135 (241)
T PRK05340 78 GNRDFLLGK---------------RFAKAAG--MTLLPDPSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRN--P--- 135 (241)
T ss_pred CCCchhhhH---------------HHHHhCC--CEEeCCcEEEEECCEEEEEECCcccccCCHHHHHHHHHHhC--H---
Confidence 999964311 0000000 12233 22222 4579999997622111111222222221 0
Q ss_pred cchhhhhcCCCCCCC-----CC------CcCCCCCc-cccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEe
Q 008730 437 GLMCELLWSDPQPLP-----GR------GPSKRGVG-LSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVF 504 (556)
Q Consensus 437 ~~~~~llw~dp~~~~-----~~------~~~~rg~g-~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvf 504 (556)
-...-+. .=|.... .+ ....+..- ....++.+.+.+++.+++.+|-||.-.+.-.....++.-++-.
T Consensus 136 ~~~~~~~-~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~~~~ 214 (241)
T PRK05340 136 WLQWLFL-ALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQLQAGGQPATRI 214 (241)
T ss_pred HHHHHHH-hCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcceeeccCCCcceEEE
Confidence 0000011 0110000 00 00001111 2345677888889999999999999765433333333222333
Q ss_pred cCCCCCCCCCCeEEEEEEecCCCceeEEEE
Q 008730 505 SAPNYCDQMGNKGAFIRFEAPTLKPNIVTF 534 (556)
Q Consensus 505 Sa~~y~~~~~n~~a~~~~~~~~~~~~~~~~ 534 (556)
+-++. ...+.++.+.++. +++..|
T Consensus 215 ~lgdw----~~~~~~~~~~~~~--~~~~~~ 238 (241)
T PRK05340 215 VLGDW----HEQGSVLKVDADG--VELIPF 238 (241)
T ss_pred EeCCC----CCCCeEEEEECCc--eEEEeC
Confidence 33333 2347888884443 455554
No 180
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.44 E-value=6.2e-07 Score=70.80 Aligned_cols=67 Identities=24% Similarity=0.354 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELN-------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 77 (556)
|+.+..+.++|.++...|+|++|+.+|++++++. |..+.++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566667777777777777777777777776551 112445666666666666666666666666654
No 181
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.44 E-value=1.3e-06 Score=91.60 Aligned_cols=130 Identities=13% Similarity=0.128 Sum_probs=120.3
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
..|.+.+.+...|..+...|+-++|..+.+.+++.++.+...|.-+|.++...++|++|+.+|+.|+.++|+|...|.-+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 46777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV 140 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~ 140 (556)
+....++++++.....-.+.+++.|.....|..++..+...++ +..|+.+
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~--y~~A~~i 165 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE--YKMALEI 165 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 9999999999999999999999999999999999988888877 4444443
No 182
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.43 E-value=3.5e-07 Score=73.46 Aligned_cols=79 Identities=33% Similarity=0.531 Sum_probs=69.5
Q ss_pred hhCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHh
Q 008730 61 LEEYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI 138 (556)
Q Consensus 61 ~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai 138 (556)
.|+|++|+..++++++.+|. +...++.+|.||+++|++++|+..+++ .+.+|.+......+|.++..+++ +++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~--y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK--YEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT---HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC--HHHHH
Confidence 68999999999999999995 467788899999999999999999999 88889888999999999999998 78888
Q ss_pred cCCC
Q 008730 139 AVPE 142 (556)
Q Consensus 139 ~~~~ 142 (556)
+.++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7543
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.40 E-value=2.8e-06 Score=91.39 Aligned_cols=110 Identities=16% Similarity=0.090 Sum_probs=94.0
Q ss_pred CCChhHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730 8 NSSVSRAEELKALANEAFRA--------KKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~--------g~~~~Al~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 77 (556)
+.+|+.+.++..++.++... .+..+|....++++.+ +|.++.++..+|..+...|++++|...+++|+.+
T Consensus 370 ~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L 449 (517)
T PRK10153 370 KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL 449 (517)
T ss_pred HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 45677777888777766543 2355667777777664 7888899999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730 78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (556)
Q Consensus 78 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 118 (556)
+| +..+|..+|.++...|++++|++.|++|++++|.++..
T Consensus 450 ~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 450 EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 99 58899999999999999999999999999999998863
No 184
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.39 E-value=4.5e-06 Score=87.73 Aligned_cols=128 Identities=15% Similarity=0.113 Sum_probs=108.8
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
..++.+......+..+...|+.++|...++++++ .|.++......+.+ ..++.+++++.+++.++.+|+++..++.+
T Consensus 258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~l 334 (398)
T PRK10747 258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTL 334 (398)
T ss_pred HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3456778889999999999999999999999999 45566555555543 44999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
|.++...+++++|.++|+++++..|++.. +..++.++...|+ .++|..++.
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~--~~~A~~~~~ 385 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHK--PEEAAAMRR 385 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999998654 5579999998888 466655554
No 185
>PRK15331 chaperone protein SicA; Provisional
Probab=98.38 E-value=2.9e-06 Score=75.57 Aligned_cols=99 Identities=14% Similarity=-0.002 Sum_probs=89.0
Q ss_pred HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730 42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (556)
Q Consensus 42 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 121 (556)
.+.++.-+..+..|.-++..|++++|...|+-....+|.+++.++.||.|+..+++|++|+..|..|..++++++...+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34555667788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHhcCCC
Q 008730 122 VKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 122 l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.+.|+..+++ .++|...+.
T Consensus 111 agqC~l~l~~--~~~A~~~f~ 129 (165)
T PRK15331 111 TGQCQLLMRK--AAKARQCFE 129 (165)
T ss_pred HHHHHHHhCC--HHHHHHHHH
Confidence 9999999998 455555443
No 186
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.38 E-value=9.4e-06 Score=85.29 Aligned_cols=128 Identities=16% Similarity=0.109 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhhCHHHHHHHHHHHHHhCCCChH-HHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR-AFAHTKLEEYGSAIQDASKAIEIDPRYPK-GYYRRG 89 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~l-g~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~lg 89 (556)
..+...+..|...+..|+|++|.+...++-+..+. +..++.+ +.+..+.|+++.|..++.++.+.+|++.. .....+
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a 160 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRV 160 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 45666788899999999999999887776664433 4555555 56669999999999999999999999754 444559
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.++...|++++|.+.++++.+.+|+++.++..++.++...++ +++|++..+
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd--w~~a~~~l~ 211 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA--WSSLLDILP 211 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 999999999999999999999999999999999999988877 788876655
No 187
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=2.7e-06 Score=85.46 Aligned_cols=116 Identities=18% Similarity=0.119 Sum_probs=81.0
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
+.+.+-.+++++.|..+-..|+.++|+++|-+.-.+--++++.++.++.+|..+.+...|++++.++..+-|++|..+..
T Consensus 518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk 597 (840)
T KOG2003|consen 518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK 597 (840)
T ss_pred cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence 34455667788888888888888888888877777777777788888888888888888888888888777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 123 (556)
+|..|-+.|+-.+|.+++-...+..|.+.+....++
T Consensus 598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA 633 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence 777777666655444444444444444444444444
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.34 E-value=1.8e-05 Score=71.03 Aligned_cols=119 Identities=24% Similarity=0.311 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRRG 89 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~-~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg 89 (556)
+.+..+.+|+.+...|++.+|...|++++. +...++..+..++.+.+..+++..|...+++..+.+|. .++....+|
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 466788999999999999999999999997 46778999999999999999999999999999999986 588899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
.+|..+|++++|...|+.++...|+ +.+...++..+..+|+.
T Consensus 168 R~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRL 209 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcch
Confidence 9999999999999999999999987 56666677777777763
No 189
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=1.5e-06 Score=92.31 Aligned_cols=127 Identities=19% Similarity=0.247 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----------------------------HHHHHHHHHHHhhCHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV----------------------------YYANRAFAHTKLEEYG 65 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~----------------------------a~~~lg~~~~~~g~~~ 65 (556)
...|.....+|...|+..+|.....+-++ .|.++. |.+.+|......++|+
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS 502 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence 34455555666666666666666666555 333333 3344444445568899
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh-----HHHHhcC
Q 008730 66 SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-----FEEAIAV 140 (556)
Q Consensus 66 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~-----~~~Ai~~ 140 (556)
+|.++++..++++|-....||.+|.+..++++++.|.++|.+++.++|++..+|++++.++..+++.+ ..+|++.
T Consensus 503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999888753 5566555
Q ss_pred C
Q 008730 141 P 141 (556)
Q Consensus 141 ~ 141 (556)
.
T Consensus 583 n 583 (777)
T KOG1128|consen 583 N 583 (777)
T ss_pred C
Confidence 4
No 190
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=1.6e-06 Score=90.17 Aligned_cols=126 Identities=15% Similarity=0.192 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
....++.--+.+...++|++|+....+.+...|++..+..+.-.|+++.++|++|+...++-....-.+. ..+..|.|.
T Consensus 11 ~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~ 89 (652)
T KOG2376|consen 11 NLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCE 89 (652)
T ss_pred cHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHH
Confidence 3467788888899999999999999999999999999999999999999999999955544433222222 227999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCCC
Q 008730 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESE 144 (556)
Q Consensus 93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~ 144 (556)
++++..++|+..++ -+++.+.......+++..++++ |++|+..+..-
T Consensus 90 Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~--ydealdiY~~L 136 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLER--YDEALDIYQHL 136 (652)
T ss_pred HHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhh--HHHHHHHHHHH
Confidence 99999999999999 5577777788888999999988 89998887643
No 191
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.33 E-value=4.6e-06 Score=76.32 Aligned_cols=68 Identities=19% Similarity=0.114 Sum_probs=47.4
Q ss_pred ceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccc
Q 008730 295 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 365 (556)
Q Consensus 295 i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 365 (556)
+.++||+|+....+...+...-.....+.++++||+++++.....+. ++.. ...+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence 46899999998877665532222234567999999999987665543 2222 22446799999999986
No 192
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.33 E-value=6.4e-07 Score=70.73 Aligned_cols=67 Identities=27% Similarity=0.446 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730 45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 45 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 111 (556)
|.-+.++.++|.+|..+|+|++|+.+|++++++. |....++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3446789999999999999999999999999761 223678999999999999999999999999986
No 193
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=5.4e-06 Score=85.56 Aligned_cols=95 Identities=24% Similarity=0.319 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 94 (556)
+....++.++...++..+|+..+.++++..|.++..+...+..+.+.++++.|+...++++.+.|++..+|+.||.+|..
T Consensus 201 ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~ 280 (395)
T PF09295_consen 201 EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ 280 (395)
T ss_pred cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 35566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHH
Q 008730 95 MGKFKEALKDFQQVK 109 (556)
Q Consensus 95 ~g~~~~A~~~~~~al 109 (556)
+|++++|+..++.+=
T Consensus 281 ~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 281 LGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHhcCc
Confidence 999999998877553
No 194
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=98.28 E-value=1.8e-05 Score=73.70 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=45.5
Q ss_pred ceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCCh-HHHHHHHHhccccCCCeEEEecccccccc
Q 008730 295 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-VEVILTLFAFKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 295 i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s-~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 366 (556)
|.++||+||++..+.. ..... ...|.+|+.||++++|... .+.+..+..+ +..++.++||||...
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~-~~~D~vv~~GDl~~~~~~~~~~~~~~l~~~----~~p~~~v~GNHD~~~ 66 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKA-EEADAVIVAGDITNFGGKEAAVEINLLLAI----GVPVLAVPGNCDTPE 66 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhc-cCCCEEEECCCccCcCCHHHHHHHHHHHhc----CCCEEEEcCCCCCHH
Confidence 5789999999998876 22221 2346799999999999763 3333343332 345899999999743
No 195
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.25 E-value=1.1e-05 Score=70.55 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=73.4
Q ss_pred eEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchh
Q 008730 296 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEG 375 (556)
Q Consensus 296 ~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~ 375 (556)
.||||.||..+.+.++.... ..-+.++++||+. .+++..+..++ +..++.++||||
T Consensus 1 ~viSDtH~~~~~~~~~~~~~---~~~d~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D------------ 56 (129)
T cd07403 1 LVISDTESPALYSPEIKVRL---EGVDLILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD------------ 56 (129)
T ss_pred CeeccccCccccchHHHhhC---CCCCEEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc------------
Confidence 38999999988777776642 2346799999984 34555655542 224889999999
Q ss_pred hHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCc
Q 008730 376 EVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGP 455 (556)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~ 455 (556)
-+++++|+-. .+.. +.+
T Consensus 57 ----------------------------~~Ilv~H~pp-~~~~-------------------------~~~--------- 73 (129)
T cd07403 57 ----------------------------VDILLTHAPP-AGIG-------------------------DGE--------- 73 (129)
T ss_pred ----------------------------cCEEEECCCC-CcCc-------------------------Ccc---------
Confidence 3789999732 1000 000
Q ss_pred CCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCce
Q 008730 456 SKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE 493 (556)
Q Consensus 456 ~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~ 493 (556)
+ ...-|.+.+.+++++.+.++++-||.-....+.
T Consensus 74 --~--~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~ 107 (129)
T cd07403 74 --D--FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQ 107 (129)
T ss_pred --c--ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCcc
Confidence 0 012356788889999999999999998777665
No 196
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.24 E-value=2.7e-05 Score=81.99 Aligned_cols=120 Identities=10% Similarity=-0.019 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 93 (556)
.+.|+.-+.....+++.++|+..++++++..|.....|..+|+++.++++.+.|.+.|...++..|..+..|..++.+-.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 45666777777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 008730 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133 (556)
Q Consensus 94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~ 133 (556)
..|+.-.|...++++...+|++...|...-++..+.|..+
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 9999999999999999999999998888877777777754
No 197
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.23 E-value=7e-06 Score=79.45 Aligned_cols=201 Identities=13% Similarity=0.149 Sum_probs=98.5
Q ss_pred ceEeccCCCCH------HHHHHHHHhcCCCCCCCCeeeecccccCC-----CC--hHHHHHHHHhccccCCCeEEEeccc
Q 008730 295 FTVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDRG-----SF--SVEVILTLFAFKCMCPSAIYLSRGN 361 (556)
Q Consensus 295 i~vigDiHG~~------~~l~~~l~~~~~~~~~~~~vflGD~vdrG-----~~--s~e~l~~l~~lk~~~p~~v~~lrGN 361 (556)
+++|+|+|... ..+.+.+..... ..+.+|++||++|.. +. ..++...+..++.. +..|+++.||
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~--~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~~v~GN 77 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEAR--KADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCYFMHGN 77 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhc--cCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 36899999543 234444443211 345799999999952 11 23455666666432 4579999999
Q ss_pred ccccccccccCchhhHHhhhhHHHHHHHHHHhcccccc--cc-cCCeEEEEecccccCCCCChhhhhhcccCC-------
Q 008730 362 HESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLA--HV-LNQKVFVVHGGLFSVDGVKLSDIKTIDRFC------- 431 (556)
Q Consensus 362 HE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~--~~-i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~------- 431 (556)
||...-. .+.+... +..+|-. .. -+.+++++||-..........-.+++-|..
T Consensus 78 HD~~~~~---------------~~~~~~g--i~~l~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~ 140 (231)
T TIGR01854 78 RDFLIGK---------------RFAREAG--MTLLPDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQPWLQRLFL 140 (231)
T ss_pred CchhhhH---------------HHHHHCC--CEEECCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCHHHHHHHH
Confidence 9964210 0111000 1122222 12 256899999965221111111122221110
Q ss_pred -CCCC-ccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCC
Q 008730 432 -EPPE-EGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNY 509 (556)
Q Consensus 432 -~~~~-~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y 509 (556)
-++. ...+...+|+.+....... + -.-....+..+.+.++..+++++|-||.-.+.-+.+..++.-++-++-++.
T Consensus 141 ~l~~~~r~~l~~~~~~~s~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~~~~~~~lgdW 217 (231)
T TIGR01854 141 HLPLAVRVKLARKIRAESRADKQMK--S-QDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQPATRIVLGDW 217 (231)
T ss_pred hCCHHHHHHHHHHHHHHHHHhcCCC--c-chhhCCCHHHHHHHHHHcCCCEEEECCccCcceeecccCCCccEEEEECCC
Confidence 0000 1112223333211110000 0 011234567788889999999999999975544443334333344444444
Q ss_pred CCCCCCeEEEEEE
Q 008730 510 CDQMGNKGAFIRF 522 (556)
Q Consensus 510 ~~~~~n~~a~~~~ 522 (556)
. ..+.++.+
T Consensus 218 ~----~~~~~~~~ 226 (231)
T TIGR01854 218 Y----RQGSILRV 226 (231)
T ss_pred c----cCCeEEEE
Confidence 2 23566666
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.23 E-value=1.4e-05 Score=68.30 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 008730 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN---DPDAAQKV 122 (556)
Q Consensus 49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l 122 (556)
.+++.+|.++-.+|+.++|+..|++++....+. ..+++.+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578899999999999999999999999975543 679999999999999999999999999999898 77778888
Q ss_pred HHHHHHHhhhhHHHHhcCC
Q 008730 123 KECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 123 ~~~~~~~~~~~~~~Ai~~~ 141 (556)
+.++...|+ .++|++..
T Consensus 82 Al~L~~~gr--~~eAl~~~ 98 (120)
T PF12688_consen 82 ALALYNLGR--PKEALEWL 98 (120)
T ss_pred HHHHHHCCC--HHHHHHHH
Confidence 888888887 56665543
No 199
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.22 E-value=4.2e-06 Score=91.55 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 93 (556)
...|..+|..|.+.+++.+|+..|+.|++.+|.+..+|..+|.+|.+.|+|.-|++.|.+|..++|.+..+.|..|.+..
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
.+|+|.+|+..+...+........+...++.++.+..
T Consensus 642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~a 678 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDA 678 (1238)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999887776667777776665543
No 200
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=98.22 E-value=5.5e-05 Score=72.25 Aligned_cols=194 Identities=16% Similarity=0.152 Sum_probs=100.4
Q ss_pred cceEeccCCCC----HHHHH----HHHHhcCCCCCCCCeeeecccccCCCChH--H-HHHHHHhccccCCCeEEEecccc
Q 008730 294 HFTVCGDVHGQ----FYDLL----NIFELNGLPSEENPYLFNGDFVDRGSFSV--E-VILTLFAFKCMCPSAIYLSRGNH 362 (556)
Q Consensus 294 ~i~vigDiHG~----~~~l~----~~l~~~~~~~~~~~~vflGD~vdrG~~s~--e-~l~~l~~lk~~~p~~v~~lrGNH 362 (556)
+++++||+|-- ...+. .+.+...-. .-+.+|++||++|.|.... + ....+..|. ..+--++.++|||
T Consensus 2 ~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~-~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~-~~~~p~~~~~GNH 79 (214)
T cd07399 2 TLAVLPDTQYYTESYPEVFDAQTDWIVDNAEAL-NIAFVLHLGDIVDDGDNDAEWEAADKAFARLD-KAGIPYSVLAGNH 79 (214)
T ss_pred EEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHc-CCCEEEECCCccCCCCCHHHHHHHHHHHHHHH-HcCCcEEEECCCC
Confidence 48899999942 22232 233333222 2356999999999998432 1 222222232 1223478899999
Q ss_pred cccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhh
Q 008730 363 ESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCEL 442 (556)
Q Consensus 363 E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~l 442 (556)
|... ...+. ...+..+.+.+.++..|- ..-++++|-=+ .+... + ....
T Consensus 80 D~~~-~ld~~--------~~~~ql~WL~~~L~~~~~----~~~iv~~H~p~-~~~~~---------~---------~~~~ 127 (214)
T cd07399 80 DLVL-ALEFG--------PRDEVLQWANEVLKKHPD----RPAILTTHAYL-NCDDS---------R---------PDSI 127 (214)
T ss_pred cchh-hCCCC--------CCHHHHHHHHHHHHHCCC----CCEEEEecccc-cCCCC---------c---------Cccc
Confidence 9421 11111 123334445555554331 23578888633 11000 0 0000
Q ss_pred hcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHC-CCCEEEeeccccccCceEe-----cCCeEEEEecCCCCCCCCCCe
Q 008730 443 LWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDN-SLDLVVRSHEVKDEGYEIE-----HDGKLITVFSAPNYCDQMGNK 516 (556)
Q Consensus 443 lw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~-~~~~iir~H~~~~~G~~~~-----~~~~~itvfSa~~y~~~~~n~ 516 (556)
.|.+ +..-|...+.+.++++ ++++++-||.-. .+.... .++.|..+.+........+|-
T Consensus 128 ~~~~--------------~~~~~~~~~~~ll~~~~~V~~v~~GH~H~-~~~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~ 192 (214)
T cd07399 128 DYDS--------------DVNDGQQIWDKLVKKNDNVFMVLSGHVHG-AGRTTLVSVGDAGRTVHQMLADYQGEPNGGNG 192 (214)
T ss_pred cccc--------------ccccHHHHHHHHHhCCCCEEEEEccccCC-CceEEEcccCCCCCEeeEEeecccCCCCCCcc
Confidence 1110 1124556788889988 799999999763 333332 144566665544332222322
Q ss_pred E-EEEEEecCCCceeEEEEec
Q 008730 517 G-AFIRFEAPTLKPNIVTFAA 536 (556)
Q Consensus 517 ~-a~~~~~~~~~~~~~~~~~~ 536 (556)
. .++.|+..+.++.+.+|.+
T Consensus 193 ~~r~~~f~~~~~~i~~~tysp 213 (214)
T cd07399 193 FLRLLEFDPDNNKIDVRTYSP 213 (214)
T ss_pred eEEEEEEecCCCEEEEEeCCC
Confidence 1 4677744446777777743
No 201
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.21 E-value=1.9e-05 Score=88.51 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------------
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-------------- 77 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------------- 77 (556)
.+-.+++.+|.+|-+.|++++|...|+++++.+|+++.+++++|..|... +.++|+..+.+|++.
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W 192 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIW 192 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 33468999999999999999999999999999999999999999999999 999999999999865
Q ss_pred ------CCCChHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730 78 ------DPRYPKG--------------------YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (556)
Q Consensus 78 ------~p~~~~~--------------------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 128 (556)
+|++... +.-+=.+|...++|++++..++.+|+++|+|..+...++.++..
T Consensus 193 ~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 193 SKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 4444332 22233778888999999999999999999999999999999873
No 202
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.19 E-value=4.3e-05 Score=69.65 Aligned_cols=160 Identities=19% Similarity=0.257 Sum_probs=101.1
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccC
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 372 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g 372 (556)
++|.|+||.||...+..+..+..... .-+.+|.+||++..+.. ..+-. ....+++.++||.|.....
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~-~~d~vih~GD~~~~~~~-----~~l~~---~~~~~i~~V~GN~D~~~~~---- 68 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLE-KVDAVIHAGDSTSPFTL-----DALEG---GLAAKLIAVRGNCDGEVDQ---- 68 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhc-CCCEEEECCCcCCccch-----HHhhc---ccccceEEEEccCCCcccc----
Confidence 46999999999997555554443333 45679999999965432 22211 0236899999999975432
Q ss_pred chhhHHhhhhHHHHHHHHHHhccccccccc---CCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCC
Q 008730 373 FEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP 449 (556)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~ 449 (556)
..+|....+ +-+++++||....+
T Consensus 69 ---------------------~~~p~~~~~~~~g~ki~l~HGh~~~~--------------------------------- 94 (172)
T COG0622 69 ---------------------EELPEELVLEVGGVKIFLTHGHLYFV--------------------------------- 94 (172)
T ss_pred ---------------------ccCChhHeEEECCEEEEEECCCcccc---------------------------------
Confidence 234444333 46899999965110
Q ss_pred CCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEe--cCCCCCCCCCCeEEEEEEecCCC
Q 008730 450 LPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVF--SAPNYCDQMGNKGAFIRFEAPTL 527 (556)
Q Consensus 450 ~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvf--Sa~~y~~~~~n~~a~~~~~~~~~ 527 (556)
......+..+-+..+.+.+|.||+-.+ .++. .++ ++-|- |.+.+- .++..+++.++.++.
T Consensus 95 -------------~~~~~~l~~la~~~~~Dvli~GHTH~p-~~~~-~~~-i~~vNPGS~s~pr--~~~~~sy~il~~~~~ 156 (172)
T COG0622 95 -------------KTDLSLLEYLAKELGADVLIFGHTHKP-VAEK-VGG-ILLVNPGSVSGPR--GGNPASYAILDVDNL 156 (172)
T ss_pred -------------ccCHHHHHHHHHhcCCCEEEECCCCcc-cEEE-ECC-EEEEcCCCcCCCC--CCCCcEEEEEEcCCC
Confidence 122557777888889999999999853 3322 222 22222 444443 346667888867778
Q ss_pred ceeEEEEecC
Q 008730 528 KPNIVTFAAV 537 (556)
Q Consensus 528 ~~~~~~~~~~ 537 (556)
++.+..++..
T Consensus 157 ~~~~~~~~~~ 166 (172)
T COG0622 157 EVEVLFLERD 166 (172)
T ss_pred EEEEEEeecc
Confidence 8887777553
No 203
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.16 E-value=1e-06 Score=86.08 Aligned_cols=104 Identities=38% Similarity=0.539 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
-+.+......+..++..|++++|++.|..+++++|..+..+..++.++.++++...|+..|..|+.++|+....|-.+|.
T Consensus 111 ~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~ 190 (377)
T KOG1308|consen 111 MDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGY 190 (377)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhH
Confidence 34455566678888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSPN 114 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p~ 114 (556)
+...+|++++|..++..+.+++-+
T Consensus 191 A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 191 AERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred HHHHhhchHHHHHHHHHHHhcccc
Confidence 999999999999999999999744
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.16 E-value=1.3e-05 Score=78.63 Aligned_cols=93 Identities=26% Similarity=0.170 Sum_probs=80.5
Q ss_pred HHHHHHHHHHH-HHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 008730 48 AVYYANRAFAH-TKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQ 120 (556)
Q Consensus 48 ~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~ 120 (556)
...++..|..+ .+.|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ ++++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46678888876 56799999999999999999998 5799999999999999999999999999998875 67888
Q ss_pred HHHHHHHHHhhhhHHHHhcCCC
Q 008730 121 KVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 121 ~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.++.++..+++ .++|...++
T Consensus 222 klg~~~~~~g~--~~~A~~~~~ 241 (263)
T PRK10803 222 KVGVIMQDKGD--TAKAKAVYQ 241 (263)
T ss_pred HHHHHHHHcCC--HHHHHHHHH
Confidence 88999888776 667766654
No 205
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.15 E-value=3e-05 Score=69.04 Aligned_cols=118 Identities=19% Similarity=0.154 Sum_probs=72.8
Q ss_pred ceEeccCCCCHH------H----HHHHHHhcCCCCCCCCeeeecccccCCCCh--HHHHHHHHhccccCCCeEEEecccc
Q 008730 295 FTVCGDVHGQFY------D----LLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCPSAIYLSRGNH 362 (556)
Q Consensus 295 i~vigDiHG~~~------~----l~~~l~~~~~~~~~~~~vflGD~vdrG~~s--~e~l~~l~~lk~~~p~~v~~lrGNH 362 (556)
|+.++|+|=... . |.++++...-. ..+.++++||+++.|... .+...++..+.... ..+++++|||
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~-~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~GNH 78 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKAL-DPDLVVITGDLTQRGLPEEFEEAREFLDALPAPL-EPVLVVPGNH 78 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhcc-CCCEEEECCCCCCCCCHHHHHHHHHHHHHccccC-CcEEEeCCCC
Confidence 467899993211 1 11233333222 345799999999998742 23334454444221 3799999999
Q ss_pred cccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhh
Q 008730 363 ESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCEL 442 (556)
Q Consensus 363 E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~l 442 (556)
|. ++++|..+ .+...
T Consensus 79 D~-----------------------------------------iv~~Hhp~-~~~~~----------------------- 93 (144)
T cd07400 79 DV-----------------------------------------IVVLHHPL-VPPPG----------------------- 93 (144)
T ss_pred eE-----------------------------------------EEEecCCC-CCCCc-----------------------
Confidence 98 88899755 21100
Q ss_pred hcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceE
Q 008730 443 LWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEI 494 (556)
Q Consensus 443 lw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~ 494 (556)
-|.+ .. . +.+.+.+++++.++++++-||.-....+.+
T Consensus 94 ~~~~---------~~-----~-~~~~~~~~l~~~~~~~~l~GH~H~~~~~~~ 130 (144)
T cd07400 94 SGRE---------RL-----L-DAGDALKLLAEAGVDLVLHGHKHVPYVGNI 130 (144)
T ss_pred cccc---------cC-----C-CHHHHHHHHHHcCCCEEEECCCCCcCeeec
Confidence 0000 00 1 566788899999999999999987655543
No 206
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.10 E-value=0.00015 Score=77.76 Aligned_cols=184 Identities=15% Similarity=0.081 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 93 (556)
...++-+|+.|...|++++|+++.++||+..|..++.+...|.++-+.|++.+|.++++.|-.+|+.+-..-...+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999888888888999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--C-----HHHHHH--HHHHHHHHhhhhHHHHhcCCCCCcc----ccccccccccccCC
Q 008730 94 AMGKFKEALKDFQQVKKLSPN--D-----PDAAQK--VKECEKAVKKLKFEEAIAVPESERH----SVADSIDYQSIGMS 160 (556)
Q Consensus 94 ~~g~~~~A~~~~~~al~l~p~--~-----~~~~~~--l~~~~~~~~~~~~~~Ai~~~~~~~~----~~~~~~~~~~l~~~ 160 (556)
+.|+.++|.+.+..-.+-+-+ . .-.|+. .|.++.+.|. +..|+..+..... ...+.+|...
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~--~~~ALk~~~~v~k~f~~~~~DQfDFH~---- 347 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD--YGLALKRFHAVLKHFDDFEEDQFDFHS---- 347 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHhcccccHHH----
Confidence 999999999998866554421 1 123443 3455555554 5666654432211 1112222221
Q ss_pred CCCccchhHHHHHHhhhhhhhHhhhcccHHHHHHHHhHHHHHHHHHh
Q 008730 161 PSSSFVSTQAAILAATATVVVAVVVMVWPAVATTVAGMVVAVLMILG 207 (556)
Q Consensus 161 p~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~l~~~~~~~l~ 207 (556)
.-..+-...+-..++.+...+.+.|....+..+.+......-+
T Consensus 348 ----Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d 390 (517)
T PF12569_consen 348 ----YCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHD 390 (517)
T ss_pred ----HHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhc
Confidence 1111222334456778888999999999988888777666544
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.10 E-value=0.0002 Score=67.75 Aligned_cols=124 Identities=21% Similarity=0.214 Sum_probs=98.6
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhh-----------CHHHHHHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLE-----------EYGSAIQDASKAI 75 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~a~~~lg~~~~~~g-----------~~~~A~~~~~~al 75 (556)
++-..++.+.+|.++++.|+|++|+..|++.++..|+++ .+++.+|.+++.+. ...+|+..|+..+
T Consensus 38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li 117 (203)
T PF13525_consen 38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI 117 (203)
T ss_dssp STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence 455678899999999999999999999999999999874 68899999877654 3458999999999
Q ss_pred HhCCCChH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhhh
Q 008730 76 EIDPRYPK-----------------GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKLK 133 (556)
Q Consensus 76 ~l~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~ 133 (556)
...|++.. --+..|..|.+.|.+..|+.-++.+++..|+.+ +++..+..++..+|...
T Consensus 118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 99998742 345578888999999999999999999999875 45667777788877643
No 208
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.04 E-value=5.7e-05 Score=79.57 Aligned_cols=121 Identities=18% Similarity=0.131 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH---------------------------------HHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY---------------------------------ANRAFA 57 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~---------------------------------~~lg~~ 57 (556)
|.....|...+..+...|+..+|...+.+|++.+|++-+.| +.-+..
T Consensus 581 pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 581 PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANL 660 (913)
T ss_pred CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHH
Confidence 33344455566666666666666666666666666655544 444444
Q ss_pred HHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 58 HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
...+++.++|++.++++++..|+....|+.+|+++.++++.+.|.+.|...++..|.....|..++.+....++
T Consensus 661 er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence 44555666666666666666666666666666666666666666666666666666666666666666555544
No 209
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.03 E-value=0.00036 Score=67.93 Aligned_cols=122 Identities=15% Similarity=0.134 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhh------------------CHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLE------------------EYGSAIQ 69 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g------------------~~~~A~~ 69 (556)
+....+.+.+|.++++.++|++|+..|++.++.+|++ +.+++.+|.++..++ .-.+|+.
T Consensus 66 ~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~ 145 (243)
T PRK10866 66 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR 145 (243)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence 4555678999999999999999999999999999887 567899998875554 1357899
Q ss_pred HHHHHHHhCCCChH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Q 008730 70 DASKAIEIDPRYPK-----------------GYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKAV 129 (556)
Q Consensus 70 ~~~~al~l~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~~~~~~ 129 (556)
.+++.++..|+... --+..|.-|.+.|.|..|+.-++.+++..|+. .+++..+..++..+
T Consensus 146 ~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l 225 (243)
T PRK10866 146 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL 225 (243)
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 99999999998632 23456777899999999999999999998876 46677777888877
Q ss_pred hhh
Q 008730 130 KKL 132 (556)
Q Consensus 130 ~~~ 132 (556)
|..
T Consensus 226 g~~ 228 (243)
T PRK10866 226 QLN 228 (243)
T ss_pred CCh
Confidence 764
No 210
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.02 E-value=0.00015 Score=77.72 Aligned_cols=50 Identities=16% Similarity=0.164 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
++++.+|..|...|++++|++++++|++..|..++.+...|+++...|+.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 45677777777888888888888888888888888887788777777773
No 211
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.98 E-value=9.3e-06 Score=79.25 Aligned_cols=82 Identities=23% Similarity=0.214 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
.-..|..|+++|+|++|+++|.+++.++|.|+..+.++|.+|+++.++..|...++.|+.++.....+|...+.+...+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hh
Q 008730 131 KL 132 (556)
Q Consensus 131 ~~ 132 (556)
+.
T Consensus 180 ~~ 181 (536)
T KOG4648|consen 180 NN 181 (536)
T ss_pred hH
Confidence 74
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.96 E-value=1.6e-05 Score=55.11 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
+..+|.+|..+|++++|++.|+++++.+|+++.++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 33344444444444444444444444444444444433
No 213
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.95 E-value=5.7e-05 Score=69.54 Aligned_cols=74 Identities=20% Similarity=0.168 Sum_probs=69.5
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 82 (556)
-.|+.+..++.+|..+...|+|+.|.+.|+..+++||....+..|+|..++--|+|+-|.+.+.+--+.||++|
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 46788899999999999999999999999999999999999999999999999999999999999988888765
No 214
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.94 E-value=2.3e-05 Score=54.30 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008730 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (556)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 124 (556)
|.+++.+|.+|..+|++++|++.|+++++.+|+++.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4689999999999999999999999999999999999998875
No 215
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.93 E-value=1.8e-05 Score=78.52 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=50.7
Q ss_pred CCcceEeccCCCC----HHHHHHHHHhcCCCCCCCCeeeecccccCC--CChHHHHHHHHhccccCCCeEEEeccccccc
Q 008730 292 GKHFTVCGDVHGQ----FYDLLNIFELNGLPSEENPYLFNGDFVDRG--SFSVEVILTLFAFKCMCPSAIYLSRGNHESK 365 (556)
Q Consensus 292 ~~~i~vigDiHG~----~~~l~~~l~~~~~~~~~~~~vflGD~vdrG--~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 365 (556)
+.+|++++|+|.. ...+.++++...-. ..|.+++.||++|++ ....++...+..++... .++.+.||||..
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~-~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GNHD~~ 125 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIEQ-KPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGNHDRP 125 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHhc-CCCEEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCCCCcc
Confidence 4689999999976 45567777665433 345799999999954 23345666676676434 499999999974
No 216
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=97.91 E-value=0.00046 Score=68.12 Aligned_cols=70 Identities=14% Similarity=0.025 Sum_probs=43.5
Q ss_pred cceEeccCCCCH----------------HHHHHHHHhcC-CCCCCCCeeeecccccCCCChH-------HHHHHHHhccc
Q 008730 294 HFTVCGDVHGQF----------------YDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSV-------EVILTLFAFKC 349 (556)
Q Consensus 294 ~i~vigDiHG~~----------------~~l~~~l~~~~-~~~~~~~~vflGD~vdrG~~s~-------e~l~~l~~lk~ 349 (556)
+++++||+|--. ..|.++++.+. ..+..+.+|++||+++.|.... +....+..+
T Consensus 6 ~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~-- 83 (262)
T cd07395 6 YFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLL-- 83 (262)
T ss_pred EEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhc--
Confidence 478889998553 23455555543 2234457999999999887541 122222222
Q ss_pred cCCCeEEEeccccccc
Q 008730 350 MCPSAIYLSRGNHESK 365 (556)
Q Consensus 350 ~~p~~v~~lrGNHE~~ 365 (556)
..+-.++.++||||..
T Consensus 84 ~~~vp~~~i~GNHD~~ 99 (262)
T cd07395 84 DPDIPLVCVCGNHDVG 99 (262)
T ss_pred cCCCcEEEeCCCCCCC
Confidence 1234699999999974
No 217
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.00026 Score=69.64 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=91.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH--------------HhCC---
Q 008730 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI--------------EIDP--- 79 (556)
Q Consensus 17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al--------------~l~p--- 79 (556)
-.-+|.+++..|+|++|+..|+-+.+.+.-+++.+.++|.|+.-+|.|.+|.....++- +++.
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence 34578899999999999999999999887788999999999999999999977766552 1111
Q ss_pred ---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 80 ---------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 80 ---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
+..+-...+|.+++..-.|++|++.|.+.+.-+|+....-.+++.|+.++.-.
T Consensus 140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYy 201 (557)
T KOG3785|consen 140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYY 201 (557)
T ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchh
Confidence 12234455666777777889999999999999888887778888888877654
No 218
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=97.90 E-value=0.00023 Score=67.19 Aligned_cols=70 Identities=11% Similarity=0.045 Sum_probs=42.4
Q ss_pred CcceEeccCCCCHH-----------HHHHHHHh-cCCCCCCCCeeeecccccCCCCh---HHHHHHHHhccccCCCeEEE
Q 008730 293 KHFTVCGDVHGQFY-----------DLLNIFEL-NGLPSEENPYLFNGDFVDRGSFS---VEVILTLFAFKCMCPSAIYL 357 (556)
Q Consensus 293 ~~i~vigDiHG~~~-----------~l~~~l~~-~~~~~~~~~~vflGD~vdrG~~s---~e~l~~l~~lk~~~p~~v~~ 357 (556)
.++.+++|+|-... ...+.++. +... ..+.+|++||+++.+... .+.+..++.......-.+++
T Consensus 3 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~ 81 (199)
T cd07383 3 FKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAE-KPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAA 81 (199)
T ss_pred eEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhc-CCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEE
Confidence 36899999995221 11222222 2111 335699999999977653 55555544433323356889
Q ss_pred eccccc
Q 008730 358 SRGNHE 363 (556)
Q Consensus 358 lrGNHE 363 (556)
+.||||
T Consensus 82 ~~GNHD 87 (199)
T cd07383 82 TFGNHD 87 (199)
T ss_pred ECccCC
Confidence 999999
No 219
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.89 E-value=1.3e-05 Score=52.14 Aligned_cols=32 Identities=34% Similarity=0.634 Sum_probs=18.3
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 008730 71 ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (556)
Q Consensus 71 ~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~ 102 (556)
|++|++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555554
No 220
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.87 E-value=8.8e-07 Score=90.49 Aligned_cols=245 Identities=13% Similarity=-0.003 Sum_probs=164.8
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHH
Q 008730 262 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI 341 (556)
Q Consensus 262 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l 341 (556)
+.......+++.+.+++..+|+...+..-+.--.++++|.||.+.|+.+.++.- |....-|++-|++++++....+.+
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHHHH
Confidence 555667778888999999999988877655556899999999999999999853 444556999999999999999999
Q ss_pred HHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhH---HHHHHHHHHhcccc-cccccCCeEEEEecccc---
Q 008730 342 LTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE---TFVELFAEVFCCLP-LAHVLNQKVFVVHGGLF--- 414 (556)
Q Consensus 342 ~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~lP-~~~~i~~~~~~vHgGi~--- 414 (556)
..+...+...|+...+.|++||+..+...++|..+....++. .+...+. +..++ +....++.++ -|.-++
T Consensus 93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~~~~~~--~~~~~~i~~~y~g~~l-e~~kvt~e~ 169 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVVEMKID--EEDMDLIESDYSGPVL-EDHKVTLEF 169 (476)
T ss_pred HHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCccccccccc--cccccccccccCCccc-ccchhhHHH
Confidence 999999999999999999999999998888888776666532 1111111 11111 3333332222 121110
Q ss_pred ---------------cCCCCC-hhhhhhcccCCCCC-CccchhhhhcCCCCCCCC-CCcCCCCCccccCHHHHHHHHHHC
Q 008730 415 ---------------SVDGVK-LSDIKTIDRFCEPP-EEGLMCELLWSDPQPLPG-RGPSKRGVGLSFGADVTKRFLQDN 476 (556)
Q Consensus 415 ---------------~~~~~~-~~~i~~~~r~~~~~-~~~~~~~llw~dp~~~~~-~~~~~rg~g~~fg~~~~~~fl~~~ 476 (556)
+....+ ++....+.+...++ +.....+..|++|....| +.+..++.+...++..+..|+.+.
T Consensus 170 vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ylfng 249 (476)
T KOG0376|consen 170 VKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYLFNG 249 (476)
T ss_pred HHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcccccccC
Confidence 000000 11111111111111 111445678888877654 566677888888899999999999
Q ss_pred CCCEEEeecccc------------ccCceEecC---CeEEEEecCCCCCC
Q 008730 477 SLDLVVRSHEVK------------DEGYEIEHD---GKLITVFSAPNYCD 511 (556)
Q Consensus 477 ~~~~iir~H~~~------------~~G~~~~~~---~~~itvfSa~~y~~ 511 (556)
++.-+++.|.-+ ..+|...++ +..+++|+++.+|-
T Consensus 250 dfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~ 299 (476)
T KOG0376|consen 250 DFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVK 299 (476)
T ss_pred ceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchh
Confidence 998888888742 333333332 35899999998873
No 221
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.84 E-value=1.6e-05 Score=51.60 Aligned_cols=34 Identities=41% Similarity=0.463 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHH
Q 008730 36 LYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ 69 (556)
Q Consensus 36 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 69 (556)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999999999999999999999999963
No 222
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00012 Score=66.53 Aligned_cols=74 Identities=31% Similarity=0.363 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 84 (556)
...+-.|.+.|.+..+.+.++.|+..+.+|++++|.+..++..+|.+|.++..|++|+.+|.+.++.+|..-.+
T Consensus 131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 34455678899999999999999999999999999999999999999999999999999999999999986544
No 223
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.84 E-value=2.7e-05 Score=74.91 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=51.3
Q ss_pred CcceEeccCCCCHH----HHHHHHHhcCCCCCCCCeeeecccccCCCChH-HHHHHHHhccccCCCeEEEecccccccc
Q 008730 293 KHFTVCGDVHGQFY----DLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-EVILTLFAFKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 293 ~~i~vigDiHG~~~----~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~-e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 366 (556)
.+|.+++|+|+... .+.++++.+... ..+.+++.||++|.+.... ++..++..+. .+..++.+.||||...
T Consensus 2 ~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~-~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNHD~~~ 77 (223)
T cd07385 2 LRIAHLSDLHLGPFVSRERLERLVEKINAL-KPDLVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNHDYYS 77 (223)
T ss_pred CEEEEEeecCCCccCCHHHHHHHHHHHhcc-CCCEEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCccccc
Confidence 46999999998643 566666655433 2457999999999988765 5555555553 3456999999999853
No 224
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.82 E-value=0.00015 Score=65.26 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=59.3
Q ss_pred CChhHHHHHHHHHHHHHHcc----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-----------HHHH
Q 008730 9 SSVSRAEELKALANEAFRAK----------KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-----------YGSA 67 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g----------~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~-----------~~~A 67 (556)
.+|.+++++.+-|.+++... -+++|+.-|++||.++|+..+++.++|.+|..++. |++|
T Consensus 20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 46788899999888887654 45778999999999999999999999999998764 7889
Q ss_pred HHHHHHHHHhCCCChH
Q 008730 68 IQDASKAIEIDPRYPK 83 (556)
Q Consensus 68 ~~~~~~al~l~p~~~~ 83 (556)
..+|++|...+|++..
T Consensus 100 ~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 100 TEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHhcCCCcHH
Confidence 9999999999998754
No 225
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.82 E-value=0.00013 Score=72.92 Aligned_cols=120 Identities=16% Similarity=0.170 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
+.+...-.-.++++.++++.|.+.+++.-+.+.+..-.....|-+.+..| ++.+|...|+...+..+.++..+..+|.
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~ 209 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV 209 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 45556667788899999999999999988877665433333333334444 5999999999988887889999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
++..+|+|++|.+.+++|+..+|++++++.++..+...+|+.
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999988888773
No 226
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.00011 Score=70.71 Aligned_cols=132 Identities=19% Similarity=0.237 Sum_probs=108.6
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH----------Hh
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI----------EI 77 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al----------~l 77 (556)
+..|.+-..+..+|.+|+...+|..|.++|++.-.+.|.........+..+++.+.+.+|+....... ++
T Consensus 38 Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqL 117 (459)
T KOG4340|consen 38 ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQL 117 (459)
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34555667788899999999999999999999999999999998899999999999888876554332 11
Q ss_pred --------------------CC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHH
Q 008730 78 --------------------DP--RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFE 135 (556)
Q Consensus 78 --------------------~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 135 (556)
-| +......+.|-+.++.|++++|.+-|+.|++...-++-..++++.+..+.++ ++
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~q--ya 195 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQ--YA 195 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhh--HH
Confidence 23 3567888899999999999999999999999999999999999999888776 67
Q ss_pred HHhcCC
Q 008730 136 EAIAVP 141 (556)
Q Consensus 136 ~Ai~~~ 141 (556)
.|+++.
T Consensus 196 sALk~i 201 (459)
T KOG4340|consen 196 SALKHI 201 (459)
T ss_pred HHHHHH
Confidence 776543
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=0.00025 Score=68.26 Aligned_cols=82 Identities=28% Similarity=0.341 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 008730 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKE 124 (556)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~ 124 (556)
.++.|.-+++.|+|.+|.+.|..-++..|+. +.++|.||.+++.+|++++|...|..+.+-.|++ ++++..++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7889999999999999999999999999985 7899999999999999999999999999998766 678999999
Q ss_pred HHHHHhhh
Q 008730 125 CEKAVKKL 132 (556)
Q Consensus 125 ~~~~~~~~ 132 (556)
+...+++.
T Consensus 224 ~~~~l~~~ 231 (262)
T COG1729 224 SLGRLGNT 231 (262)
T ss_pred HHHHhcCH
Confidence 99999885
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.79 E-value=0.0001 Score=62.40 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHH
Q 008730 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP----DAAQKVKECE 126 (556)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~l~~~~ 126 (556)
+...|.++.+.|+.+.|++.|.+++.+-|..+.+|.+++.++.-+|+.++|+..+++|+++..+.. .++...+.++
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999975543 3556677778
Q ss_pred HHHhhh
Q 008730 127 KAVKKL 132 (556)
Q Consensus 127 ~~~~~~ 132 (556)
..+|+.
T Consensus 126 Rl~g~d 131 (175)
T KOG4555|consen 126 RLLGND 131 (175)
T ss_pred HHhCch
Confidence 777763
No 229
>PRK04036 DNA polymerase II small subunit; Validated
Probab=97.77 E-value=0.0005 Score=74.06 Aligned_cols=74 Identities=23% Similarity=0.257 Sum_probs=45.2
Q ss_pred CCcceEeccCC-CCH----HHHHHHHHhc-CC-------CCCCCCeeeecccccC-CCCh---------------HHHHH
Q 008730 292 GKHFTVCGDVH-GQF----YDLLNIFELN-GL-------PSEENPYLFNGDFVDR-GSFS---------------VEVIL 342 (556)
Q Consensus 292 ~~~i~vigDiH-G~~----~~l~~~l~~~-~~-------~~~~~~~vflGD~vdr-G~~s---------------~e~l~ 342 (556)
..++++|+|+| |.- ..+..+++.+ |. ...-+.+|++||++|. |+.. .++..
T Consensus 243 ~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~ 322 (504)
T PRK04036 243 KVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAE 322 (504)
T ss_pred ccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHH
Confidence 35799999999 653 2233333332 22 1223579999999995 3221 13445
Q ss_pred HHHhccccCCCeEEEeccccccccc
Q 008730 343 TLFAFKCMCPSAIYLSRGNHESKSM 367 (556)
Q Consensus 343 ~l~~lk~~~p~~v~~lrGNHE~~~~ 367 (556)
+|..+. ..-.|++++||||....
T Consensus 323 ~L~~L~--~~i~V~~ipGNHD~~~~ 345 (504)
T PRK04036 323 YLKQIP--EDIKIIISPGNHDAVRQ 345 (504)
T ss_pred HHHhhh--cCCeEEEecCCCcchhh
Confidence 555553 23479999999997553
No 230
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.77 E-value=8e-05 Score=74.41 Aligned_cols=128 Identities=24% Similarity=0.262 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--CC--
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--RY-- 81 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~-- 81 (556)
..+..+..-|+.|...|+|++|.++|.++.+..-. -+.++...+.+|.+. ++++|+.+|++|+.+.- .+
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~ 111 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS 111 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence 34667778899999999999999999999887521 145567777777655 99999999999998732 22
Q ss_pred --hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 82 --PKGYYRRGAAYLAM-GKFKEALKDFQQVKKLSPN--D----PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 82 --~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~--~----~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..++..+|.+|... |++++|+++|++|+++... . ...+..++.++..+++ |++|++.++
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~--y~~A~~~~e 179 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR--YEEAIEIYE 179 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 56899999999999 9999999999999998432 2 2355677777777775 899988876
No 231
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=97.73 E-value=0.00028 Score=74.87 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccc
Q 008730 307 DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 367 (556)
Q Consensus 307 ~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~ 367 (556)
.|..+++++- .|++-.+||+.||||.+-.+++.|+.. .+|-+-.||||--.|
T Consensus 175 al~~lIqrL~----VDhLHIvGDIyDRGp~pd~ImD~Lm~~-----hsvDIQWGNHDIlWM 226 (640)
T PF06874_consen 175 ALSELIQRLA----VDHLHIVGDIYDRGPRPDKIMDRLMNY-----HSVDIQWGNHDILWM 226 (640)
T ss_pred HHHHHHHHHh----hhheeecccccCCCCChhHHHHHHhcC-----CCccccccchHHHHH
Confidence 3445555543 457999999999999999999999866 477888999995433
No 232
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.71 E-value=6.4e-05 Score=48.76 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCC
Q 008730 51 YANRAFAHTKLEEYGSAIQDASKAIEIDP 79 (556)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p 79 (556)
|+++|.+|..+|++++|+.+|++|++++|
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 33444444444444444444444444443
No 233
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.69 E-value=6.9e-05 Score=48.58 Aligned_cols=34 Identities=35% Similarity=0.819 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115 (556)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 115 (556)
+.+|+++|.+|..+|++++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.68 E-value=0.0013 Score=58.64 Aligned_cols=99 Identities=26% Similarity=0.280 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhhCHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----------------------AVYYANRAFAHTKLEEYGSAIQD 70 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----------------------~~a~~~lg~~~~~~g~~~~A~~~ 70 (556)
....+...|......++.+.++..+++++.+.... ..+...++..+...|++++|+..
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 34556666778888999999999999999985331 23455677788889999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730 71 ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 71 ~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 111 (556)
+++++..+|.+-.+|..+-.+|...|+..+|++.|+++.+.
T Consensus 85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987553
No 235
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.00043 Score=68.21 Aligned_cols=106 Identities=14% Similarity=0.167 Sum_probs=86.1
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Q 008730 22 NEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE 100 (556)
Q Consensus 22 ~~~~~~g~~~~Al~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~ 100 (556)
..+....||..|+..++-.+..+.+.. ..-..+|.|++++|+|++|+..|+.+.+.+..+.+.+.++|.|++.+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 456788999999999998887775543 5666789999999999999999999999887789999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 101 ALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 101 A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
|...-.+| |+++-....+-.+..++++
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCc
Confidence 98766554 6666655555555545544
No 236
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.66 E-value=7e-05 Score=74.92 Aligned_cols=126 Identities=16% Similarity=0.229 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CCC--C
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEI----DPR--Y 81 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~--~ 81 (556)
-+++-++|+.|+-.|+|++|+..-+.-+++..+ .-.++.++|.|+.-+|+++.|+++|++++.+ ... .
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 356778899999999999999998888877543 2467899999999999999999999998754 222 2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
....|.+|..|.-+.++++||.+.++-|.+..+ ...+...++.++..++. -++|+...
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~--h~kAl~fa 338 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE--HRKALYFA 338 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh--HHHHHHHH
Confidence 456788999999999999999999998887532 34567777888887777 35554443
No 237
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.64 E-value=0.00013 Score=47.17 Aligned_cols=32 Identities=34% Similarity=0.781 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (556)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 114 (556)
++++.+|.++..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 238
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.64 E-value=0.0035 Score=59.94 Aligned_cols=106 Identities=22% Similarity=0.263 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYY 86 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~ 86 (556)
.+..|++.|...++.|+|++|+..|+......|.. ..+...++.++++.++|++|+...++-+++.|.+ ..+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 47889999999999999999999999999998876 4678889999999999999999999999999876 45788
Q ss_pred HHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHH
Q 008730 87 RRGAAYLAMG--------KFKEALKDFQQVKKLSPNDPDA 118 (556)
Q Consensus 87 ~lg~~~~~~g--------~~~~A~~~~~~al~l~p~~~~~ 118 (556)
.+|.+++..= -..+|+..++..++..|+...+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya 152 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA 152 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch
Confidence 8898876542 2467999999999999987543
No 239
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.63 E-value=0.00048 Score=68.77 Aligned_cols=106 Identities=25% Similarity=0.230 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 008730 11 VSRAEELKALANEAFRA-KKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~-g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-- 81 (556)
...+..+..+|..|... |++++|+++|++|+++.... ...+...|.++.++|+|++|++.|+++....-++
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l 190 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL 190 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 34577888999999999 99999999999999984321 4567788999999999999999999998754321
Q ss_pred -----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730 82 -----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (556)
Q Consensus 82 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 116 (556)
...++..+.|+...|++-.|...+++....+|...
T Consensus 191 ~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 191 LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 23567788899999999999999999999998653
No 240
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.63 E-value=0.00032 Score=70.05 Aligned_cols=101 Identities=23% Similarity=0.266 Sum_probs=83.7
Q ss_pred HHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 008730 21 ANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF 98 (556)
Q Consensus 21 g~~~~~~g--~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 98 (556)
+.+.+..| .+.+|.-.|++..+..+.++..++.+|.|++.+|+|++|...+.+++..+|+++.++.+++.+...+|+.
T Consensus 172 awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 172 AWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 33444455 6999999999988888899999999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHH
Q 008730 99 -KEALKDFQQVKKLSPNDPDAAQK 121 (556)
Q Consensus 99 -~~A~~~~~~al~l~p~~~~~~~~ 121 (556)
+.+.+++.+....+|+++.....
T Consensus 252 ~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 252 TEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp CHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCChHHHHH
Confidence 66778888888889998766443
No 241
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=8.3e-05 Score=69.48 Aligned_cols=88 Identities=24% Similarity=0.263 Sum_probs=78.2
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 53 NRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 53 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
.-|..+....+|..|+.+|.+|+.++|..+..|-+.+.||+++.+++.+....++|++++|+...+++.++.+......
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~- 93 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG- 93 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc-
Confidence 3466777788999999999999999999999999999999999999999999999999999999999999998877666
Q ss_pred hHHHHhcCCC
Q 008730 133 KFEEAIAVPE 142 (556)
Q Consensus 133 ~~~~Ai~~~~ 142 (556)
+.+||....
T Consensus 94 -~~eaI~~Lq 102 (284)
T KOG4642|consen 94 -YDEAIKVLQ 102 (284)
T ss_pred -ccHHHHHHH
Confidence 566665443
No 242
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.60 E-value=9.2e-05 Score=72.07 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=48.4
Q ss_pred cceEeccCCCCH------HHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccc
Q 008730 294 HFTVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 365 (556)
Q Consensus 294 ~i~vigDiHG~~------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 365 (556)
+|.+++|+|+++ ..|.++++.+.-. ..+.+|+.||++++++.+.+++..+..+ .+..|+++.||||..
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~-~~d~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQ-KIDHLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNHDML 74 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhc-CCCEEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCCCCC
Confidence 488999999753 2245566655332 3467999999999887777766666553 335699999999974
No 243
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.58 E-value=0.00017 Score=46.55 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 008730 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (556)
Q Consensus 49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 80 (556)
.+|+.+|.++.++|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45555666666666666666666666666554
No 244
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.54 E-value=0.0002 Score=65.94 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=28.3
Q ss_pred CCCeeeecccccCCCChH--HHHHH-HHhccccCCCeEEEecccccccc
Q 008730 321 ENPYLFNGDFVDRGSFSV--EVILT-LFAFKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 321 ~~~~vflGD~vdrG~~s~--e~l~~-l~~lk~~~p~~v~~lrGNHE~~~ 366 (556)
.+.+|++||++|...... +.... +..+ ...+-.+++++||||...
T Consensus 42 ~d~lii~GDl~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 42 PERLIILGDLKHSFGGLSRQEFEEVAFLRL-LAKDVDVILIRGNHDGGL 89 (172)
T ss_pred CCEEEEeCcccccccccCHHHHHHHHHHHh-ccCCCeEEEEcccCccch
Confidence 357999999998654332 22211 1222 234468999999999753
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.52 E-value=0.0018 Score=56.55 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 008730 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD---AAQ 120 (556)
Q Consensus 47 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~ 120 (556)
.+..++..|...++.|+|++|++.++.+....|.. ..+.+.++.+|+..+++++|+..+++-++++|.++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 46678899999999999999999999999998864 678999999999999999999999999999998864 566
Q ss_pred HHHHHHHHHhh
Q 008730 121 KVKECEKAVKK 131 (556)
Q Consensus 121 ~l~~~~~~~~~ 131 (556)
..|.++.....
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 66766655543
No 246
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.46 E-value=0.0002 Score=70.22 Aligned_cols=73 Identities=22% Similarity=0.253 Sum_probs=47.5
Q ss_pred CcceEeccCC-CC-----------HHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHH----HHHHhccccCCCeEE
Q 008730 293 KHFTVCGDVH-GQ-----------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI----LTLFAFKCMCPSAIY 356 (556)
Q Consensus 293 ~~i~vigDiH-G~-----------~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l----~~l~~lk~~~p~~v~ 356 (556)
++++.++|+| |. ...|.++++.+.-. ..+.+|+.||++|+...+.+.. .++..|+...|-.|+
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~-~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~ 79 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAE-QIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIV 79 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEE
Confidence 4689999999 32 23444555443222 3467999999999986655433 344445433335799
Q ss_pred Eecccccccc
Q 008730 357 LSRGNHESKS 366 (556)
Q Consensus 357 ~lrGNHE~~~ 366 (556)
++.||||...
T Consensus 80 ~i~GNHD~~~ 89 (253)
T TIGR00619 80 VISGNHDSAQ 89 (253)
T ss_pred EEccCCCChh
Confidence 9999999753
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.45 E-value=0.0043 Score=57.60 Aligned_cols=120 Identities=28% Similarity=0.352 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhhCHHHHHHHHHHHHHhCC---CChHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAF-AHTKLEEYGSAIQDASKAIEIDP---RYPKGYY 86 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~-~~~~~g~~~~A~~~~~~al~l~p---~~~~~~~ 86 (556)
+.....+...+..+...+++.+|+..+.+++...+.........+. ++...|+++.|+..+.+++..+| .....+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (291)
T COG0457 92 PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL 171 (291)
T ss_pred cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 3445566667777777777777777777777766666555555555 67777777777777777766665 3455556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHh
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPN-DPDAAQKVKECEKAVK 130 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~l~~~~~~~~ 130 (556)
.++..+...+++++|+..+.+++...+. ....+..++..+...+
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 6666666777777777777777777777 5666666666665554
No 248
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.45 E-value=0.0045 Score=62.26 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-YPKGYYRRGA 90 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 90 (556)
..++.....|..-+..|+|.+|+....++-+..+.-.-++..-+.+-.++|+++.|-.++.++-+..++ ...+...++.
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 345666778888899999999999999988888887777877788999999999999999999999443 5678889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.+...|++..|.....++++..|.++.+.....++|...|. +.+.+.+.+
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~--~~~ll~~l~ 211 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA--WQALLAILP 211 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence 99999999999999999999999999999999999999887 555555443
No 249
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0016 Score=68.40 Aligned_cols=119 Identities=15% Similarity=0.185 Sum_probs=93.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------------------
Q 008730 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID------------------- 78 (556)
Q Consensus 18 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------------------- 78 (556)
+..+.+.++.+..++|+..++ -+++.+..+....|++++++|+|++|++.|+..++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 688999999999999999998 5677777888999999999999999999999885432
Q ss_pred -----------C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC--------HHHHHHHHHHHHHHhh
Q 008730 79 -----------P-RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-------PND--------PDAAQKVKECEKAVKK 131 (556)
Q Consensus 79 -----------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~--------~~~~~~l~~~~~~~~~ 131 (556)
| +..+.+|+.|-++...|+|.+|++.+++|+++. ..+ ......++.++..+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1 245689999999999999999999999996552 111 1244566677777776
Q ss_pred hhHHHHhcCC
Q 008730 132 LKFEEAIAVP 141 (556)
Q Consensus 132 ~~~~~Ai~~~ 141 (556)
.++|.+++
T Consensus 240 --t~ea~~iy 247 (652)
T KOG2376|consen 240 --TAEASSIY 247 (652)
T ss_pred --hHHHHHHH
Confidence 56665543
No 250
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.45 E-value=0.00021 Score=70.72 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=47.0
Q ss_pred cceEeccCC-C------------CHHHHHHHHHhcCCCCCCCCeeeecccccCCCC-hHHHHHHHHhccccCCCeEEEec
Q 008730 294 HFTVCGDVH-G------------QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSF-SVEVILTLFAFKCMCPSAIYLSR 359 (556)
Q Consensus 294 ~i~vigDiH-G------------~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~-s~e~l~~l~~lk~~~p~~v~~lr 359 (556)
|+.+|+|+| + ....+.++++.+.... .+.+|++||+++.|.. +.+-+..+...-...+-.++.+.
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~-~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~ 80 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRES-LDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVL 80 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCC-CCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEec
Confidence 588999999 2 2456667777664332 4569999999998873 22333333322222234689999
Q ss_pred cccccccc
Q 008730 360 GNHESKSM 367 (556)
Q Consensus 360 GNHE~~~~ 367 (556)
||||....
T Consensus 81 GNHD~~~~ 88 (267)
T cd07396 81 GNHDLYNP 88 (267)
T ss_pred Cccccccc
Confidence 99998643
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0047 Score=60.11 Aligned_cols=117 Identities=19% Similarity=0.145 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH---------------------
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK--------------------- 73 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~--------------------- 73 (556)
..-...+......|++.+|...+..++..+|++..+...++.||...|+.+.|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 34456677889999999999999999999999999999999999999999777444333
Q ss_pred -------------HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhh
Q 008730 74 -------------AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--NDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 74 -------------al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~l~~~~~~~~~ 131 (556)
.+..+|++..+.+.+|..|...|+.++|.+.+-..++.+- ++..+...+-.+....|.
T Consensus 215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 2233788888888888888888888888888888777754 344555555555555553
No 252
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=97.41 E-value=0.00025 Score=69.52 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=45.0
Q ss_pred ceEeccCCCCHHHHHHHHHhcCC--CCCCCCeeeecccccCCCCh-HHHH-------------HHHHhccccCCCeEEEe
Q 008730 295 FTVCGDVHGQFYDLLNIFELNGL--PSEENPYLFNGDFVDRGSFS-VEVI-------------LTLFAFKCMCPSAIYLS 358 (556)
Q Consensus 295 i~vigDiHG~~~~l~~~l~~~~~--~~~~~~~vflGD~vdrG~~s-~e~l-------------~~l~~lk~~~p~~v~~l 358 (556)
|+|+||+||+++.+.+.++.... ....+.+|++||+-..+..+ .+.+ .++-. ....|--+++|
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g-~~~~p~~t~fi 79 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSG-EKKAPILTIFI 79 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcC-CccCCeeEEEE
Confidence 68999999999998775543321 12356799999997544332 2222 12211 23356668999
Q ss_pred ccccccc
Q 008730 359 RGNHESK 365 (556)
Q Consensus 359 rGNHE~~ 365 (556)
.||||..
T Consensus 80 ~GNHE~~ 86 (262)
T cd00844 80 GGNHEAS 86 (262)
T ss_pred CCCCCCH
Confidence 9999964
No 253
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.39 E-value=0.0018 Score=70.94 Aligned_cols=119 Identities=11% Similarity=0.119 Sum_probs=102.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 008730 23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (556)
Q Consensus 23 ~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~ 102 (556)
-....++|.+|+....+.++..|+...+....|..+.++|+.++|...++..-...+++...+-.+-.||..++++++|.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 45678999999999999999999999999999999999999999998888777778888899999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh--HHHHhcCCC
Q 008730 103 KDFQQVKKLSPNDPDAAQKVKECEKAVKKLK--FEEAIAVPE 142 (556)
Q Consensus 103 ~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~--~~~Ai~~~~ 142 (556)
..|+++...+|+ .+....+-.++.+.+..+ -+.|+++++
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 777777777777766644 333455444
No 254
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.36 E-value=0.0009 Score=67.24 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC------CC
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELN------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP------RY 81 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p------~~ 81 (556)
-+++.++|+++.-.|+++.|+++|++.+.+. ...+...+.+|.+|.-+.++++||.+..+-+.+.- ..
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4678899999999999999999999988763 22466788999999999999999999998876632 34
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHHhh
Q 008730 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP-----N-DPDAAQKVKECEKAVKK 131 (556)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----~-~~~~~~~l~~~~~~~~~ 131 (556)
..+++.+|.++..+|..++|+.+.++.+++.- . ...+..++......+|.
T Consensus 315 ~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 315 LRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 77999999999999999999999988888742 1 22345555555555554
No 255
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0017 Score=61.76 Aligned_cols=105 Identities=19% Similarity=0.321 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIE----LNS--QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~----~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 84 (556)
+..+.....+|...++.||.+.|..+|++.-+ ++. .......+.+.+|.-.++|.+|...|.+.+..||.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 55667788999999999999999999994433 222 234567778888888999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 115 (556)
-.+.|.|+..+|+..+|++..+.++...|..
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999974
No 256
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.32 E-value=0.0053 Score=61.82 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
++......+..+...|++++|.+...++++..-+.. .....+ ..+.++++.=++..++.++..|+++..+..+|..+
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~ 338 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA 338 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 356677788899999999999999999999765433 222222 34578899999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
.+.+.|.+|..+|+.|++..|+ ...+..++.++.++|+.
T Consensus 339 ~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 339 LKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEP 377 (400)
T ss_pred HHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCCh
Confidence 9999999999999999999887 56678889999888874
No 257
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=97.31 E-value=0.0004 Score=69.11 Aligned_cols=72 Identities=15% Similarity=0.071 Sum_probs=46.6
Q ss_pred CCcceEeccCC-C-----------CHHHHHHHHHhcC-CCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEe
Q 008730 292 GKHFTVCGDVH-G-----------QFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLS 358 (556)
Q Consensus 292 ~~~i~vigDiH-G-----------~~~~l~~~l~~~~-~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~l 358 (556)
..+++.|+|+| . ....|.++++.+. ..+.-+-+|+.||+++.|. .+-+..+...-...+..++++
T Consensus 14 ~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~l~~Pv~~v 91 (275)
T PRK11148 14 RVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAPLRKPCVWL 91 (275)
T ss_pred CEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhhcCCcEEEe
Confidence 35799999999 1 2456777777653 2233467999999999874 222222222212224569999
Q ss_pred ccccccc
Q 008730 359 RGNHESK 365 (556)
Q Consensus 359 rGNHE~~ 365 (556)
.||||..
T Consensus 92 ~GNHD~~ 98 (275)
T PRK11148 92 PGNHDFQ 98 (275)
T ss_pred CCCCCCh
Confidence 9999973
No 258
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=97.29 E-value=0.0028 Score=63.44 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=50.0
Q ss_pred cceEeccCCCC------HHHHHHHHHhcCCCCCCCCeeeecccccCCCC-hHHHHHHHHhccccCCCeEEEecccccccc
Q 008730 294 HFTVCGDVHGQ------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSF-SVEVILTLFAFKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 294 ~i~vigDiHG~------~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~-s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 366 (556)
+|+.|+|+|-. ...+..+++.+..... |.+|+.||+.+.|.. +.+-+..++. +...|..+++++||||...
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~-D~~v~tGDl~~~~~~~~~~~~~~~l~-~~~~~~~~~~vpGNHD~~~ 79 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKP-DLLVVTGDLTNDGEPEEYRRLKELLA-RLELPAPVIVVPGNHDARV 79 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcCCC-CEEEEccCcCCCCCHHHHHHHHHHHh-hccCCCceEeeCCCCcCCc
Confidence 58899999976 3345556676664433 679999999999632 2222222222 2356788999999999887
Q ss_pred cc
Q 008730 367 MN 368 (556)
Q Consensus 367 ~~ 368 (556)
.+
T Consensus 80 ~~ 81 (301)
T COG1409 80 VN 81 (301)
T ss_pred hH
Confidence 65
No 259
>PHA02546 47 endonuclease subunit; Provisional
Probab=97.28 E-value=0.00033 Score=71.84 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=46.9
Q ss_pred CcceEeccCC-C-----------CHHHHHHHHHhcCCCCCCCCeeeecccccCC-CChHHHHHHHHh--cc--ccCCCeE
Q 008730 293 KHFTVCGDVH-G-----------QFYDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFA--FK--CMCPSAI 355 (556)
Q Consensus 293 ~~i~vigDiH-G-----------~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG-~~s~e~l~~l~~--lk--~~~p~~v 355 (556)
+|++.+||+| | +...|.++++.+.-. ..+.+|+.||++|+. +.+.+++.++.. ++ ...+-.|
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~-~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v 79 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAH-GITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITL 79 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHc-CCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 4689999999 4 223445555544322 346799999999985 445555444433 11 1234579
Q ss_pred EEecccccccc
Q 008730 356 YLSRGNHESKS 366 (556)
Q Consensus 356 ~~lrGNHE~~~ 366 (556)
++|.||||...
T Consensus 80 ~~I~GNHD~~~ 90 (340)
T PHA02546 80 HVLVGNHDMYY 90 (340)
T ss_pred EEEccCCCccc
Confidence 99999999743
No 260
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=97.28 E-value=0.00029 Score=67.58 Aligned_cols=73 Identities=27% Similarity=0.291 Sum_probs=46.8
Q ss_pred cceEeccCC-CCH--------------HHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHH----HhccccCCCe
Q 008730 294 HFTVCGDVH-GQF--------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTL----FAFKCMCPSA 354 (556)
Q Consensus 294 ~i~vigDiH-G~~--------------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l----~~lk~~~p~~ 354 (556)
||+.++|+| |.. ..|.++++.+... ..+.+|+.||++|.+..+.+.+..+ ..++. ..-.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEE-KVDFVLIAGDLFDSNNPSPEALELLIEALRRLKE-AGIP 78 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhc-CCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHH-CCCC
Confidence 478999999 422 2355566554333 3456999999999886555443333 33321 1346
Q ss_pred EEEecccccccccc
Q 008730 355 IYLSRGNHESKSMN 368 (556)
Q Consensus 355 v~~lrGNHE~~~~~ 368 (556)
++++.||||.....
T Consensus 79 v~~~~GNHD~~~~~ 92 (223)
T cd00840 79 VFIIAGNHDSPSRL 92 (223)
T ss_pred EEEecCCCCCcccc
Confidence 89999999976543
No 261
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.28 E-value=0.0082 Score=54.36 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=93.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHcCCH
Q 008730 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE-IDPRYPKGYYRRGAAYLAMGKF 98 (556)
Q Consensus 20 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~p~~~~~~~~lg~~~~~~g~~ 98 (556)
.+....+.=|.+.++....+.++..|. ..-.+.+|..+.++|++.+|...|++++. +...++..+..++.+++..++.
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 344555566777777777777887776 44577899999999999999999999986 5667899999999999999999
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhh
Q 008730 99 KEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 99 ~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~~~~ 132 (556)
.+|...+++..+..|. .++....+++++...|+.
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~ 176 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKY 176 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCc
Confidence 9999999999999885 356677888888888774
No 262
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.25 E-value=0.00052 Score=62.86 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=43.6
Q ss_pred ceEeccCCCCHHHH---------------HHHHHhcC-CCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEe
Q 008730 295 FTVCGDVHGQFYDL---------------LNIFELNG-LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLS 358 (556)
Q Consensus 295 i~vigDiHG~~~~l---------------~~~l~~~~-~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~l 358 (556)
+++|+|+|=..... ..+++.+. .....+.+|++||++++|..+.. +..+..+ +..++++
T Consensus 1 ~~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v 75 (168)
T cd07390 1 IYFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLI 75 (168)
T ss_pred CeEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEE
Confidence 47889999444322 22333321 12235679999999999987644 4444443 3469999
Q ss_pred ccccccccc
Q 008730 359 RGNHESKSM 367 (556)
Q Consensus 359 rGNHE~~~~ 367 (556)
+||||....
T Consensus 76 ~GNHD~~~~ 84 (168)
T cd07390 76 KGNHDSSLE 84 (168)
T ss_pred eCCCCchhh
Confidence 999997654
No 263
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.23 E-value=0.0061 Score=71.30 Aligned_cols=123 Identities=13% Similarity=0.114 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Q 008730 16 ELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAY 92 (556)
Q Consensus 16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~ 92 (556)
.+..+...|.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|+..|++..+. .|+ ...|..+..++
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~ 659 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Confidence 34444445555555555555555554443 233444555555555555555555555554443 232 33444555555
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 93 LAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 93 ~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
.+.|++++|.+.++++.+.. +.+...+..+..++.+.++ .++|.+++
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~--~eeA~~lf 707 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN--WKKALELY 707 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC--HHHHHHHH
Confidence 55555555555555555442 2234444455555544444 34444443
No 264
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0034 Score=61.68 Aligned_cols=93 Identities=25% Similarity=0.332 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (556)
Q Consensus 48 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 123 (556)
+.-+-.-|+-|++.++|..|+..|.++++.... +...|.++|.|...+|+|..|+..+.+|+.++|.+..++..-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 445666799999999999999999999987544 3568999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHhcCCC
Q 008730 124 ECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 124 ~~~~~~~~~~~~~Ai~~~~ 142 (556)
.|...+.+ +++|....+
T Consensus 161 kc~~eLe~--~~~a~nw~e 177 (390)
T KOG0551|consen 161 KCLLELER--FAEAVNWCE 177 (390)
T ss_pred HHHHHHHH--HHHHHHHHh
Confidence 99999988 677766655
No 265
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=97.18 E-value=0.00072 Score=65.72 Aligned_cols=68 Identities=26% Similarity=0.354 Sum_probs=44.9
Q ss_pred cceEeccCCCC------------HHHHHHHHHhcCCC-CCCCCeeeecccccCCCC-hH-HHHHHHHhccccCCCeEEEe
Q 008730 294 HFTVCGDVHGQ------------FYDLLNIFELNGLP-SEENPYLFNGDFVDRGSF-SV-EVILTLFAFKCMCPSAIYLS 358 (556)
Q Consensus 294 ~i~vigDiHG~------------~~~l~~~l~~~~~~-~~~~~~vflGD~vdrG~~-s~-e~l~~l~~lk~~~p~~v~~l 358 (556)
|+.+++|+|=. ...+.++++.+... +..+-+|++||+++.|.. .. .++..+..+ +-.++.+
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~----~~p~~~v 76 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAAL----PIPVYLL 76 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhc----CCCEEEe
Confidence 48899999933 34566777755332 244579999999998753 22 233333333 3468999
Q ss_pred ccccccc
Q 008730 359 RGNHESK 365 (556)
Q Consensus 359 rGNHE~~ 365 (556)
+||||..
T Consensus 77 ~GNHD~~ 83 (240)
T cd07402 77 PGNHDDR 83 (240)
T ss_pred CCCCCCH
Confidence 9999974
No 266
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.011 Score=56.41 Aligned_cols=125 Identities=17% Similarity=0.208 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH----hCC--CChHHHHHH
Q 008730 16 ELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIE----IDP--RYPKGYYRR 88 (556)
Q Consensus 16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~p--~~~~~~~~l 88 (556)
..+.+..++...|+|.-....+.+.++.+ |.++.....+|.+.++.|+.+.|..+++.+-+ ++. .+.-+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34567788889999999999999999998 67888999999999999999999999995543 332 234567778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+.++.-.+++.+|...|.+++..+|.++.+.++.+.|...+|+ ..+|++..+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~--l~DAiK~~e 310 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK--LKDALKQLE 310 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH--HHHHHHHHH
Confidence 8888889999999999999999999999999999999999998 566666554
No 267
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.0017 Score=61.41 Aligned_cols=196 Identities=16% Similarity=0.199 Sum_probs=101.7
Q ss_pred EeccCCCC-----H-HHHHHHHHhcCCCCCCCCeeeecccccC--CCC-----hHHHHHHHHhccccCCCeEEEeccccc
Q 008730 297 VCGDVHGQ-----F-YDLLNIFELNGLPSEENPYLFNGDFVDR--GSF-----SVEVILTLFAFKCMCPSAIYLSRGNHE 363 (556)
Q Consensus 297 vigDiHG~-----~-~~l~~~l~~~~~~~~~~~~vflGD~vdr--G~~-----s~e~l~~l~~lk~~~p~~v~~lrGNHE 363 (556)
.|+|+|=. . +.|.+.++.. .+..+.++++||++|- |.+ -.+|...|..+ .....+|+.+.||||
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~--a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~-a~~G~~v~~i~GN~D 78 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREE--AAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRL-ARKGTRVYYIHGNHD 78 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhc--cccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHH-HhcCCeEEEecCchH
Confidence 58899832 2 3344555532 3345679999999972 322 24555555554 345679999999999
Q ss_pred ccccccccCchhhHHhhhhHHHHHHHHHHhccccccccc---CCeEEEEecccccCCCCChhhhhhcccCCCCC------
Q 008730 364 SKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPP------ 434 (556)
Q Consensus 364 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~------ 434 (556)
. .+...++-. .-.+.-+|-...+ +.+++++||....+... ......+....+
T Consensus 79 f-ll~~~f~~~---------------~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~---~y~~~r~~~~~~~~~~lf 139 (237)
T COG2908 79 F-LLGKRFAQE---------------AGGMTLLPDPIVLDLYGKRILLAHGDTFCTDDR---AYQWFRYKVHWAWLQLLF 139 (237)
T ss_pred H-HHHHHHHhh---------------cCceEEcCcceeeeecCcEEEEEeCCcccchHH---HHHHHHHHcccHHHHHHH
Confidence 4 333222100 0112334544333 68999999976332211 111010000000
Q ss_pred ----Cc--cchhhhhcCCCCCCCCCCcCCCCCc---cccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEec
Q 008730 435 ----EE--GLMCELLWSDPQPLPGRGPSKRGVG---LSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFS 505 (556)
Q Consensus 435 ----~~--~~~~~llw~dp~~~~~~~~~~rg~g---~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfS 505 (556)
.. ..+..-+|+.- .|........ ....+..+.+-++++|++.+|.||.-.+..-...- ..-|-
T Consensus 140 lnl~l~~R~ri~~k~r~~s----~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~i~~-~~yi~--- 211 (237)
T COG2908 140 LNLPLRVRRRIAYKIRSLS----SWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHNIPG-ITYIN--- 211 (237)
T ss_pred HHhHHHHHHHHHHHHHHhh----HHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhccCCC-ceEEe---
Confidence 00 01112345543 1111111111 13457788888999999999999998765554322 11111
Q ss_pred CCCCCCCCCCeEEEEEEecCC
Q 008730 506 APNYCDQMGNKGAFIRFEAPT 526 (556)
Q Consensus 506 a~~y~~~~~n~~a~~~~~~~~ 526 (556)
+|.-...|+++.+.++.
T Consensus 212 ----lGdW~~~~s~~~v~~~~ 228 (237)
T COG2908 212 ----LGDWVSEGSILEVDDGG 228 (237)
T ss_pred ----cCcchhcceEEEEecCc
Confidence 12233567899994443
No 268
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.16 E-value=0.0023 Score=63.40 Aligned_cols=118 Identities=14% Similarity=0.206 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----C---
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----Y--- 81 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~--- 81 (556)
+....+|+++...+.|+++++.|++|++..-++ ...+..+|..+-+++++++|+-+..+|.++--. +
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 566778999999999999999999999875443 356788999999999999999999999877432 2
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhh
Q 008730 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 82 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~l~~~~~~~~~~ 132 (556)
..+++.++.++..+|+.-.|.+++++|.++. |-......-++.+|...+..
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~ 262 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDL 262 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccH
Confidence 3467888999999999999999999998874 22344556677777776663
No 269
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.13 E-value=0.0015 Score=67.53 Aligned_cols=107 Identities=25% Similarity=0.279 Sum_probs=95.6
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL---EEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
-|..++-....|+-.+..+....|+..|.+++...|.....+.+++.++++. |+.-.|+.++..|++++|...++++
T Consensus 370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~ 449 (758)
T KOG1310|consen 370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHF 449 (758)
T ss_pred chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHH
Confidence 3566777888888888899999999999999999999999999999999885 5778899999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 116 (556)
.++.++..++++.+|+.+...+....|.+.
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 999999999999999999887766667443
No 270
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.11 E-value=0.018 Score=48.15 Aligned_cols=98 Identities=23% Similarity=0.310 Sum_probs=75.1
Q ss_pred HHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--
Q 008730 14 AEELKA--LANEAFRAKKYSQAIDLYSQAIELNSQ------------NAVYYANRAFAHTKLEEYGSAIQDASKAIEI-- 77 (556)
Q Consensus 14 a~~~~~--lg~~~~~~g~~~~Al~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-- 77 (556)
+.+|.. .|...+..|-|++|...+++|.+..-. ++.++-.|+.++..+|+|++++....+++..
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 344544 455667889999999999999987532 3456778899999999999999988888853
Q ss_pred -----CCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730 78 -----DPRY----PKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 78 -----~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 111 (556)
+.+. ..+-+.+|.++..+|+.++|+..|+.+-+.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4443 456788999999999999999999988653
No 271
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.09 E-value=0.01 Score=69.45 Aligned_cols=126 Identities=14% Similarity=0.126 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CCCChHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI----DPRYPKGYYRR 88 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~~~~~~~l 88 (556)
...|..+...|.+.|++++|++.|++..+.. ..+...|..+..++.+.|++++|.+.+++.... .|+ ...|..+
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaL 585 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGAL 585 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHH
Confidence 3455555556666666666666666554432 123455556666666666666666666665442 332 4455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
-.+|.+.|++++|.+.|+++.+.+ +.+...+..+...+.+.|+ +++|+.++.
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~--~deAl~lf~ 638 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD--WDFALSIYD 638 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC--HHHHHHHHH
Confidence 566666666666666666666654 3344555555555555554 455555443
No 272
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.08 E-value=0.007 Score=60.34 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK-LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (556)
Q Consensus 16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 94 (556)
.|..+.+...+.+..+.|...|.+|++..+.....|...|...+. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 466777778888889999999999997666678999999998777 5666669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhh
Q 008730 95 MGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKL 132 (556)
Q Consensus 95 ~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~ 132 (556)
.++.+.|+..|++++..-|... ..|..+.......|..
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl 123 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDL 123 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999877655 4666666666655543
No 273
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.012 Score=55.65 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CCC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008730 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEI--------DPR----------YPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (556)
Q Consensus 48 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 109 (556)
..++...|+-+++.|+|++|...|+.|+.. .|. ....+.+.+.|+...|+|-+++++....|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456888999999999999999999999743 232 34578999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHhh
Q 008730 110 KLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 110 ~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
...|.|..+++..+++....-+
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn 279 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWN 279 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcC
Confidence 9999999999999988765544
No 274
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.08 E-value=0.0029 Score=71.74 Aligned_cols=121 Identities=10% Similarity=-0.043 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAY 92 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~ 92 (556)
..+..+...|.+.|++++|...|++. .+.+..+|..+...|.+.|++++|+..|++..+. .| +..++..+..++
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~ 335 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIF 335 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence 34455555666666666666666543 3345555666666666666666666666555443 22 344555555556
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 93 LAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 93 ~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
.+.|++++|.+.+..+++.. +.+..++..+...|.+.|+ .++|.+.+
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~--~~~A~~vf 383 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR--MEDARNVF 383 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC--HHHHHHHH
Confidence 66666666666666555554 3344445555555555444 34444433
No 275
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=97.05 E-value=0.00082 Score=60.71 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=29.0
Q ss_pred CCCeeeecccccCCCChH-----HHHHHHHhccccC-CCeEEEecccccccc
Q 008730 321 ENPYLFNGDFVDRGSFSV-----EVILTLFAFKCMC-PSAIYLSRGNHESKS 366 (556)
Q Consensus 321 ~~~~vflGD~vdrG~~s~-----e~l~~l~~lk~~~-p~~v~~lrGNHE~~~ 366 (556)
.+.+|++||++|.+.... +.+..+..+.... +-.++++.||||...
T Consensus 39 pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 39 PDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred CCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 457999999999876432 2222222222111 346999999999754
No 276
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.05 E-value=0.0038 Score=44.84 Aligned_cols=48 Identities=13% Similarity=0.266 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
+.+|.+|..++++|+|++|..+.+.+|+.+|+|..+......+.....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 467888999999999999999999999999999888877776655543
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.02 E-value=0.0013 Score=42.47 Aligned_cols=29 Identities=38% Similarity=0.809 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p 113 (556)
|+.+|.+|..+|++++|+++|+++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33333333333333333333333333333
No 278
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.99 E-value=0.0014 Score=42.29 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 008730 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (556)
Q Consensus 49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 81 (556)
.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 679999999999999999999999999999853
No 279
>PLN03077 Protein ECB2; Provisional
Probab=96.98 E-value=0.023 Score=66.09 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=72.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Q 008730 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAYLA 94 (556)
Q Consensus 17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~ 94 (556)
+..+-..|.+.|+.++|...|++. +.+..+|..+...|.+.|+.++|++.|++..+. .|+ ..++..+-.++..
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~ 601 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSR 601 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhh
Confidence 345556667777777777777664 445666777777777777777777777766653 343 3344444456666
Q ss_pred cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 95 MGKFKEALKDFQQVKKLSP--NDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 95 ~g~~~~A~~~~~~al~l~p--~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.|+.++|.+.|++..+..+ .+...+..+..++.+.|+ +++|.+..+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~--~~eA~~~~~ 649 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK--LTEAYNFIN 649 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 7777777777776663321 123455556666666555 455555443
No 280
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.97 E-value=0.031 Score=51.69 Aligned_cols=100 Identities=25% Similarity=0.316 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH-
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA- 90 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~- 90 (556)
.......+..+...+++..+...+..++. ..+.....+...+..+...+++..|+..+.+++..++.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 56678888999999999999999999998 788889999999999999999999999999999988887666666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSP 113 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p 113 (556)
++...|++++|...+++++...|
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Confidence 89999999999999999988777
No 281
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=96.97 E-value=0.0012 Score=69.27 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=44.5
Q ss_pred CcceEeccCC-CC-H------HH----HHHHHHhcCCCCCCCCeeeecccccCCCChHHHH----HHHHhccccCCCeEE
Q 008730 293 KHFTVCGDVH-GQ-F------YD----LLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI----LTLFAFKCMCPSAIY 356 (556)
Q Consensus 293 ~~i~vigDiH-G~-~------~~----l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l----~~l~~lk~~~p~~v~ 356 (556)
++++.++|+| |. + .+ |..+.+.+... ..+.+|+.||++|++..+.+.. .++..|+.. +-.|+
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~-~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~-~~~v~ 78 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEH-QVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQT-GCQLV 78 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhc-CCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhc-CCcEE
Confidence 3689999999 42 1 11 23333333222 3457999999999986554332 334444422 34699
Q ss_pred Eecccccccc
Q 008730 357 LSRGNHESKS 366 (556)
Q Consensus 357 ~lrGNHE~~~ 366 (556)
++.||||...
T Consensus 79 ~I~GNHD~~~ 88 (407)
T PRK10966 79 VLAGNHDSVA 88 (407)
T ss_pred EEcCCCCChh
Confidence 9999999753
No 282
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.95 E-value=0.0027 Score=65.17 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQA-IELNSQ--------NAVYYANRAFAHTKLEEYGSAIQDASKAIEI----- 77 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~a-l~~~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----- 77 (556)
+.+.++...++.++..|+|.+|.+.+... ++..|. ...+|+++|.++++++.|.-+...|.+|++-
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999876543 222333 2345889999999999999999999999961
Q ss_pred ----CC---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 78 ----DP---------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 78 ----~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
.| +..+.+|+.|..|...|+.-.|.++|.++......+|..|..+++|.....+
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 12 3467899999999999999999999999999999999999999998765444
No 283
>PRK10941 hypothetical protein; Provisional
Probab=96.91 E-value=0.011 Score=58.04 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (556)
Q Consensus 49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 126 (556)
....++-.+|.+.++++.|+.+.+..+.++|+++.-+.-+|.+|.++|.+..|...++..++..|+++.+......+.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 346677888999999999999999999999999999999999999999999999999999999999998876655544
No 284
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.89 E-value=0.007 Score=68.58 Aligned_cols=93 Identities=13% Similarity=-0.024 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRRGA 90 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~ 90 (556)
...|..+...|.+.|+.++|++.|++..+.. .-+...+..+..++.+.|..++|.+.|+...+..+- +...|..+..
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 4567777777777777777777777766542 113444555555555666666666666655542111 2234444445
Q ss_pred HHHHcCCHHHHHHHHH
Q 008730 91 AYLAMGKFKEALKDFQ 106 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~ 106 (556)
+|.+.|++++|.+.++
T Consensus 471 ~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 471 LLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHhcCCHHHHHHHHH
Confidence 5555555555554444
No 285
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=96.89 E-value=0.002 Score=62.39 Aligned_cols=66 Identities=23% Similarity=0.195 Sum_probs=40.6
Q ss_pred ceEeccCCCC---------HH----HH-HHHHHhc-CCCCCCCCeeeecccccCCCCh--HHHHHHHHhccccCCCeEEE
Q 008730 295 FTVCGDVHGQ---------FY----DL-LNIFELN-GLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCPSAIYL 357 (556)
Q Consensus 295 i~vigDiHG~---------~~----~l-~~~l~~~-~~~~~~~~~vflGD~vdrG~~s--~e~l~~l~~lk~~~p~~v~~ 357 (556)
|++++|+|-. +. ++ .++.+.+ ...+..|.+|+.||++++++.. .+.+.+|..+ |..++.
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l----~~~v~~ 76 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWIDAL----PGTKVL 76 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHHHhC----CCCeEE
Confidence 5789999955 21 23 2233321 1212456799999999887633 2444444433 234899
Q ss_pred ecccccc
Q 008730 358 SRGNHES 364 (556)
Q Consensus 358 lrGNHE~ 364 (556)
+.||||.
T Consensus 77 V~GNHD~ 83 (232)
T cd07393 77 LKGNHDY 83 (232)
T ss_pred EeCCccc
Confidence 9999997
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.86 E-value=0.017 Score=60.09 Aligned_cols=119 Identities=19% Similarity=0.231 Sum_probs=90.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------C------------
Q 008730 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-------P------------ 79 (556)
Q Consensus 19 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p------------ 79 (556)
..-+..-+..+.++-++..++||+++|+++.+|..||.- ......+|.+.|+++++.. .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 344455788999999999999999999999999998862 2233556666666666431 0
Q ss_pred --C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 80 --R----YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 80 --~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
. .+.+..++|.|..++|+.+||++.++..++..|. +..++.++-.++..++. +.++-.+.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~--Yad~q~lL 318 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA--YADVQALL 318 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC--HHHHHHHH
Confidence 0 1456788999999999999999999999998875 45688888888877776 55554443
No 287
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.84 E-value=0.0032 Score=59.71 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=58.6
Q ss_pred CcceEeccCCCCHH----------------HHHHHHHhcCCCCCCCCeeeecccccCCCC-----hHHHHHHHHhccccC
Q 008730 293 KHFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFVDRGSF-----SVEVILTLFAFKCMC 351 (556)
Q Consensus 293 ~~i~vigDiHG~~~----------------~l~~~l~~~~~~~~~~~~vflGD~vdrG~~-----s~e~l~~l~~lk~~~ 351 (556)
.++.||+|+|=-+. .+.+.+.++-.....+++|++||+-.-.+. ..|+-.++-.++..
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~- 98 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER- 98 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC-
Confidence 46999999994333 223333321111123469999999865443 34555555444432
Q ss_pred CCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEeccc
Q 008730 352 PSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGL 413 (556)
Q Consensus 352 p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi 413 (556)
.+++++||||...-....++.- ..++.. .++ +++++||--
T Consensus 99 --evi~i~GNHD~~i~~~~~~~~v------------------~v~~~~-~i~-~~~~~HGh~ 138 (235)
T COG1407 99 --EVIIIRGNHDNGIEEILPGFNV------------------EVVDEL-EIG-GLLFRHGHK 138 (235)
T ss_pred --cEEEEeccCCCccccccccCCc------------------eeeeeE-Eec-CEEEEeCCC
Confidence 5999999999877665555421 123333 244 799999843
No 288
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.83 E-value=0.002 Score=61.86 Aligned_cols=68 Identities=22% Similarity=0.138 Sum_probs=41.8
Q ss_pred cceEeccCC-CCHHHHH------------HHHHhc----CCCCCCCCeeeecccccCCCC---hHHHHHHHHhccccCCC
Q 008730 294 HFTVCGDVH-GQFYDLL------------NIFELN----GLPSEENPYLFNGDFVDRGSF---SVEVILTLFAFKCMCPS 353 (556)
Q Consensus 294 ~i~vigDiH-G~~~~l~------------~~l~~~----~~~~~~~~~vflGD~vdrG~~---s~e~l~~l~~lk~~~p~ 353 (556)
++.||+|+| |.-..+. +.++++ ... .-+.+|++||+.+.... ..++..++..+. .
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~-~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~----~ 90 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKY-GIEALIINGDLKHEFKKGLEWRFIREFIEVTF----R 90 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhc-CCCEEEEcCccccccCChHHHHHHHHHHHhcC----C
Confidence 488999999 5433221 223322 221 23579999999976554 233334444432 4
Q ss_pred eEEEecccccccc
Q 008730 354 AIYLSRGNHESKS 366 (556)
Q Consensus 354 ~v~~lrGNHE~~~ 366 (556)
.+++++||||...
T Consensus 91 ~v~~V~GNHD~~~ 103 (225)
T TIGR00024 91 DLILIRGNHDALI 103 (225)
T ss_pred cEEEECCCCCCcc
Confidence 7999999999754
No 289
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.83 E-value=0.01 Score=49.33 Aligned_cols=92 Identities=14% Similarity=0.213 Sum_probs=76.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhC-----------HHHHHHHHHHHHHhCCCChHHH
Q 008730 20 LANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEE-----------YGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 20 lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~a~~~lg~~~~~~g~-----------~~~A~~~~~~al~l~p~~~~~~ 85 (556)
++..++..|++-+|++..+..+...+++. ..+..-|.++.++.. .-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57789999999999999999999988876 455666887776653 3468999999999999988888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l 111 (556)
+.+|.-+-....|+++..-.+++|..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888777777888888888888765
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.81 E-value=0.029 Score=51.45 Aligned_cols=103 Identities=17% Similarity=0.081 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
.-.-+...++..+...+++++|+..++.++....+. +-+-.++|.++.++|++++|+..+.....-+- .+..--.+
T Consensus 87 Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elr 165 (207)
T COG2976 87 YAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELR 165 (207)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHh
Confidence 344566788999999999999999999998754332 34567889999999999999988866532211 12335668
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPND 115 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~ 115 (556)
|.++...|+-++|+..|+++++..++.
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 999999999999999999999988543
No 291
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.063 Score=50.85 Aligned_cols=101 Identities=23% Similarity=0.181 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----CCCCh
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEI-----DPRYP 82 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~ 82 (556)
+..|..-+..|...++|++|..++.+|.+-..++ +.++...|....++..+.++.+.|++|..+ .|+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4556667778888899999999999999765544 456777788888899999999999999876 45555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (556)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 114 (556)
..-...|--....-+.++|+..|++++.+-..
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~ 142 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEE 142 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence 55555666666778899999999999987543
No 292
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.035 Score=53.24 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHh----hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730 48 AVYYANRAFAHTKL----EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (556)
Q Consensus 48 ~~a~~~lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 123 (556)
-..+..||.++.+. +++.+|.-.|+..-+.-|..+..+...|.|...++++++|...++.||..++++++.+.++-
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 34466677777664 46888999999888877788999999999999999999999999999999999999999998
Q ss_pred HHHHHHhh
Q 008730 124 ECEKAVKK 131 (556)
Q Consensus 124 ~~~~~~~~ 131 (556)
.+...+|.
T Consensus 249 v~a~~~Gk 256 (299)
T KOG3081|consen 249 VLALHLGK 256 (299)
T ss_pred HHHHHhCC
Confidence 88877776
No 293
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.78 E-value=0.0045 Score=64.90 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=95.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 008730 21 ANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFK 99 (556)
Q Consensus 21 g~~~~~~g~~~~Al~~~~~al~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 99 (556)
|..+...|+-..|+.++..|+...|.... ...++|.++.+.+-..+|-..+.+++.++...|-.++.+|.+|..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 44455679999999999999999997654 47899999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730 100 EALKDFQQVKKLSPNDPDAAQKVKECEK 127 (556)
Q Consensus 100 ~A~~~~~~al~l~p~~~~~~~~l~~~~~ 127 (556)
.|++.|+.|++++|+++.....+..+..
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999998877776544
No 294
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.77 E-value=0.0054 Score=59.55 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=42.5
Q ss_pred HHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730 58 HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (556)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~ 125 (556)
..+.|+.++|...|+.|+.++|+++.++...|......++.-+|-.+|-+|+.++|.+.+++.+.++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34556666666666666666666666666666666666666666666666666666666666555543
No 295
>PRK10941 hypothetical protein; Provisional
Probab=96.70 E-value=0.02 Score=56.34 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
.+-+.++-.++.+.++++.|+.+.+..+.++|+++.-+.-+|.+|.++|.+..|..+++.-++..|+++.+-.-...+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 3556678889999999999999999999999999999999999999999999999999999999999998876655543
No 296
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=96.70 E-value=0.069 Score=52.41 Aligned_cols=162 Identities=16% Similarity=0.218 Sum_probs=77.9
Q ss_pred CCCeeeecccccCCCChH------HHHHHHHhccccC-CCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHh
Q 008730 321 ENPYLFNGDFVDRGSFSV------EVILTLFAFKCMC-PSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF 393 (556)
Q Consensus 321 ~~~~vflGD~vdrG~~s~------e~l~~l~~lk~~~-p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 393 (556)
.+.+||+||++|+|.... |.=.+...+.... ..-++.+.||||.. +... ......+.|.++|
T Consensus 46 PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig-------~~~~----~~~~~~~rf~~~F 114 (257)
T cd08163 46 PDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIG-------FGNG----VVLPVRQRFEKYF 114 (257)
T ss_pred CCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccC-------CCCC----CCHHHHHHHHHHh
Confidence 356999999999997532 1211222221110 13588999999963 2211 1123356677777
Q ss_pred cccccccccCCeEEEEecccccCC---CCCh--hhhhhcccC-C-CCCCcc-c-h-hhhhcCCCCCCCC-----CCcCCC
Q 008730 394 CCLPLAHVLNQKVFVVHGGLFSVD---GVKL--SDIKTIDRF-C-EPPEEG-L-M-CELLWSDPQPLPG-----RGPSKR 458 (556)
Q Consensus 394 ~~lP~~~~i~~~~~~vHgGi~~~~---~~~~--~~i~~~~r~-~-~~~~~~-~-~-~~llw~dp~~~~~-----~~~~~r 458 (556)
........+++--|++=-++ +.. ...+ .+..-+.+. . .++... + + .-=++..|....| +.+.+.
T Consensus 115 g~~~~~~~~~~~~fV~Lds~-~l~~~~~~~~~~~~~~~l~~~l~~~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~ 193 (257)
T cd08163 115 GPTSRVIDVGNHTFVILDTI-SLSNKDDPDVYQPPREFLHSFSAMKVKSKPRILLTHVPLYRPPNTSCGPLRESKTPLPY 193 (257)
T ss_pred CCCceEEEECCEEEEEEccc-cccCCcccccchhHHHHHHhhhhccCCCCcEEEEeccccccCCCCCCCCccccCCCCCC
Confidence 65444444454333332222 110 0001 111101110 0 011111 1 1 1113333332111 223333
Q ss_pred CCcc----ccCHHHHHHHHHHCCCCEEEeeccccccCceEec
Q 008730 459 GVGL----SFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEH 496 (556)
Q Consensus 459 g~g~----~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~ 496 (556)
+.|+ .-.++.++..|+..+-.+|.-||+- ++.+..|
T Consensus 194 ~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH--~~C~~~h 233 (257)
T cd08163 194 GYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDH--DYCEVVH 233 (257)
T ss_pred CCCccceeecCHHHHHHHHHhhCCcEEEecCCC--ccceeEc
Confidence 4442 4578999999999999999999986 4444433
No 297
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=96.68 E-value=0.0031 Score=65.65 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=41.1
Q ss_pred CCCcceEeccCCCC------------HHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHh
Q 008730 291 DGKHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFA 346 (556)
Q Consensus 291 ~~~~i~vigDiHG~------------~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~ 346 (556)
+.+||++++|+|-- +..|.++++.+.-. ..|-+|+.||++|++.-|.+++..++.
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~-~vD~VLiaGDLFd~~~Ps~~~~~~~~~ 68 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQ-DVDMILLGGDLFHENKPSRKSLYQVLR 68 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHH
Confidence 45689999999932 45667777766433 356799999999999989888855443
No 298
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.012 Score=56.98 Aligned_cols=86 Identities=14% Similarity=0.204 Sum_probs=79.9
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 008730 23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (556)
Q Consensus 23 ~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~ 102 (556)
.+.+..+|++|+++...-.+.+|.+-..+..+|.||+...+|..|..+|++.-++.|......+..|..+++.+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34778899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 008730 103 KDFQQV 108 (556)
Q Consensus 103 ~~~~~a 108 (556)
......
T Consensus 99 rV~~~~ 104 (459)
T KOG4340|consen 99 RVAFLL 104 (459)
T ss_pred HHHHHh
Confidence 776654
No 299
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=96.64 E-value=0.0045 Score=55.26 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=80.8
Q ss_pred eEeccCCCCHHHHHHHHHhcC-CCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCch
Q 008730 296 TVCGDVHGQFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFE 374 (556)
Q Consensus 296 ~vigDiHG~~~~l~~~l~~~~-~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~ 374 (556)
.|+||+||+++.+.+-++... ....-+-+|++||+..-...+-+ +.-...=....|--+|++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~-~~~y~~g~~~~pipTyf~ggn~~----------- 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEE-LEAYKDGSKKVPIPTYFLGGNNP----------- 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccchhh-HHHHhcCCccCCCCEEEECCCCC-----------
Confidence 489999999999987776532 22234569999999976665533 44444445677888999999998
Q ss_pred hhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCC
Q 008730 375 GEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRG 454 (556)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~ 454 (556)
+-+||++|.=. .. +.+..+ +..+
T Consensus 69 ----------------------------~~DILlTh~wP--~g------i~~~~~-------------~~~~-------- 91 (150)
T cd07380 69 ----------------------------GVDILLTSEWP--KG------ISKLSK-------------VPFE-------- 91 (150)
T ss_pred ----------------------------CCCEEECCCCc--hh------hhhhCC-------------Cccc--------
Confidence 44799999622 11 111110 0000
Q ss_pred cCCCCCccccCHHHHHHHHHHCCCCEEEeecccc
Q 008730 455 PSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVK 488 (556)
Q Consensus 455 ~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~ 488 (556)
+.+..-|...+.+++++..=++.+-||.-+
T Consensus 92 ----~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~ 121 (150)
T cd07380 92 ----ETLLICGSDLIAELAKKLKPRYHFAGLEGV 121 (150)
T ss_pred ----ccccCCCCHHHHHHHHHcCCCeEeecCCCc
Confidence 112346788999999999999999999753
No 300
>PLN03077 Protein ECB2; Provisional
Probab=96.62 E-value=0.019 Score=66.65 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--CChHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--RYPKGYYRR 88 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~l 88 (556)
+...|..+...|.+.|+.++|++.|++..+. .|+ ...+..+-.++.+.|..++|.+.|+...+..+ -+...|..+
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 4567777777888888888888888877664 344 33344444556677777777777777663321 134566666
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 008730 89 GAAYLAMGKFKEALKDFQQV 108 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~a 108 (556)
..++.+.|++++|.+.+++.
T Consensus 632 v~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHC
Confidence 77777777777776666653
No 301
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.61 E-value=0.016 Score=51.45 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (556)
...+..++..+...|++++|+..+++++..+|.+-.+|..+-.+|...|++.+|++.|++..+
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455667888889999999999999999999999999999999999999999999999998854
No 302
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.54 E-value=0.037 Score=64.74 Aligned_cols=128 Identities=13% Similarity=0.007 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------ 81 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------ 81 (556)
.......+|..+...|++++|...++++++..+.. ..+...+|.++...|++++|...+++++......
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 34555667888999999999999999999865543 2356778999999999999999999999763321
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--------DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--------~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..++..+|.++...|++++|...+++++.+... ....+..++.++...|+ +++|.....
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~--~~~A~~~~~ 597 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR--LDEAEQCAR 597 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 346778899999999999999999999987322 12234456666666666 566655544
No 303
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.52 E-value=0.0046 Score=59.02 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=21.7
Q ss_pred cCHHHHHHHHHHCCCCEEEeeccccccC
Q 008730 464 FGADVTKRFLQDNSLDLVVRSHEVKDEG 491 (556)
Q Consensus 464 fg~~~~~~fl~~~~~~~iir~H~~~~~G 491 (556)
.....+.+.++..+++.+|-||.-...-
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~~~ 203 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRPAL 203 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCe
Confidence 3456677778889999999999975433
No 304
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.52 E-value=0.04 Score=63.53 Aligned_cols=115 Identities=13% Similarity=0.008 Sum_probs=80.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHH
Q 008730 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLA 94 (556)
Q Consensus 17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~ 94 (556)
+..+...|.+.+.+++|.++|+.-++...+....|..+|..+++..+-+.|...+.+|++.-|. ..+..-..|...++
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 3445556666777777777777777766666777777777777777777777777777777776 56666666777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 95 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
.|+.+.++..|+-.+.-.|...+.|..+.......+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC
Confidence 7777777777777777777777777666665555443
No 305
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.52 E-value=0.073 Score=54.92 Aligned_cols=106 Identities=17% Similarity=0.173 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 93 (556)
.+.|...|+--..++++..|...|++||..+..+..+|...+.+-++.+...-|...+.+|+.+-|.--..|+..-..-.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 45677778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008730 94 AMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (556)
Q Consensus 94 ~~g~~~~A~~~~~~al~l~p~~~~~~~ 120 (556)
.+|+...|.+.|++-+...|+. .+|.
T Consensus 153 ~LgNi~gaRqiferW~~w~P~e-qaW~ 178 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDE-QAWL 178 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcH-HHHH
Confidence 9999999999999999999973 4443
No 306
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.48 E-value=0.049 Score=63.67 Aligned_cols=127 Identities=11% Similarity=0.015 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC------
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR------ 80 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------ 80 (556)
...++..+|..+...|++++|...++++++..... ..++.++|.++...|++++|...+++++.+-..
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 569 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL 569 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 34567788999999999999999999999764321 345678899999999999999999999886221
Q ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 81 --YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN-----DPDAAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 81 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
....+..+|.++...|++++|...+++++..... ...++..++.+....|+ +++|....
T Consensus 570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~--~~~A~~~l 635 (903)
T PRK04841 570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD--LDNARRYL 635 (903)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence 2334667899999999999999999999887432 13334445566555554 55554443
No 307
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.47 E-value=0.22 Score=47.91 Aligned_cols=121 Identities=16% Similarity=0.175 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhh--------CHHHHHHHHHHHHHhCC
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLE--------EYGSAIQDASKAIEIDP 79 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~a~~~lg~~~~~~g--------~~~~A~~~~~~al~l~p 79 (556)
|-.-++...++.++++.++|++|+...++-+++.|.++ .+++.+|.++...= --.+|+..++..++.-|
T Consensus 68 ~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 68 PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence 33467889999999999999999999999999998874 56778888876532 25678999999999999
Q ss_pred CCh-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhh
Q 008730 80 RYP-----------------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKK 131 (556)
Q Consensus 80 ~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~ 131 (556)
+.. .-=+..|..|.+.|.+-.|+.-++.+++.-|+.. +++..+..++..+|-
T Consensus 148 nS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 148 NSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence 752 1234567788899999999999999999977654 456666677777765
No 308
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=96.44 E-value=0.0099 Score=51.94 Aligned_cols=74 Identities=14% Similarity=0.013 Sum_probs=45.6
Q ss_pred ceEeccCCC------------CHHHHHHH-HHhc-CCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecc
Q 008730 295 FTVCGDVHG------------QFYDLLNI-FELN-GLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRG 360 (556)
Q Consensus 295 i~vigDiHG------------~~~~l~~~-l~~~-~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrG 360 (556)
++.+||+|= +.+....+ +... ....++|.+.+|||+.-.-..-.+..+.+-.| |+++++++|
T Consensus 6 myfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~G 81 (186)
T COG4186 6 MYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERL----NGRKHLVPG 81 (186)
T ss_pred EEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHHc----CCcEEEeeC
Confidence 788888882 33333222 2211 12234667999999986555445555555444 689999999
Q ss_pred cccccccccccC
Q 008730 361 NHESKSMNKIYG 372 (556)
Q Consensus 361 NHE~~~~~~~~g 372 (556)
|||-.......+
T Consensus 82 NhDk~~~~~~~~ 93 (186)
T COG4186 82 NHDKCHPMYRHA 93 (186)
T ss_pred CCCCCcccccch
Confidence 999766554433
No 309
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.43 E-value=0.0059 Score=38.78 Aligned_cols=31 Identities=32% Similarity=0.657 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (556)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 114 (556)
+++++|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666665554
No 310
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.037 Score=54.68 Aligned_cols=121 Identities=11% Similarity=-0.054 Sum_probs=100.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHc
Q 008730 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-DPRY---PKGYYRRGAAYLAM 95 (556)
Q Consensus 20 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~---~~~~~~lg~~~~~~ 95 (556)
.+......|++.+|...+++.++-.|.+.-++..--.++..+|+.......+++++-. +|+. ..+.-.++-.+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3455677889999999999999999999988888888888999999999999999877 7665 44555567788899
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 96 g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
|-|++|.+.-+++++++|.+.-+...++.+++..++ ..++.+...
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r--~Keg~eFM~ 233 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR--HKEGKEFMY 233 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch--hhhHHHHHH
Confidence 999999999999999999998888888888887777 456655443
No 311
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=96.36 E-value=0.23 Score=46.71 Aligned_cols=212 Identities=15% Similarity=0.144 Sum_probs=110.8
Q ss_pred CCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccc--cCCCChHHHHH-HHHhccccCCCeEEEecccccccccc
Q 008730 292 GKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFV--DRGSFSVEVIL-TLFAFKCMCPSAIYLSRGNHESKSMN 368 (556)
Q Consensus 292 ~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~v--drG~~s~e~l~-~l~~lk~~~p~~v~~lrGNHE~~~~~ 368 (556)
.+++..+.|+||.++.+.+++...... .-+.+|+.||+. +.|+.-.-.-. .+..++. ..-.|+.++||-|...+-
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~-~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~-~~~~v~avpGNcD~~~v~ 80 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADI-RADLLVIAGDLTYFHFGPKEVAEELNKLEALKE-LGIPVLAVPGNCDPPEVI 80 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhc-cCCEEEEecceehhhcCchHHHHhhhHHHHHHh-cCCeEEEEcCCCChHHHH
Confidence 367999999999999999998877644 345699999999 88875322221 1333332 236899999998865442
Q ss_pred cccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCC------CChhhhhhcccC-CCCCCccchhh
Q 008730 369 KIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDG------VKLSDIKTIDRF-CEPPEEGLMCE 441 (556)
Q Consensus 369 ~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~------~~~~~i~~~~r~-~~~~~~~~~~~ 441 (556)
... ...+..+ .+-...+++-.||-=||. .|.. .+-++|...-+. .....+..---
T Consensus 81 ~~l-------~~~~~~v----------~~~v~~i~~~~~~G~Ggs-n~tp~nt~~e~~E~~I~s~l~~~v~~~~~~~~Il 142 (226)
T COG2129 81 DVL-------KNAGVNV----------HGRVVEIGGYGFVGFGGS-NPTPFNTPREFSEDEIYSKLKSLVKKADNPVNIL 142 (226)
T ss_pred HHH-------Hhccccc----------ccceEEecCcEEEEeccc-CCCCCCCccccCHHHHHHHHHHHHhcccCcceEE
Confidence 110 0000000 011112233333333454 2221 112222222111 00000000000
Q ss_pred hhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEE
Q 008730 442 LLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIR 521 (556)
Q Consensus 442 llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~ 521 (556)
++..-|-... .. .+-| -..-|..+++++.++.+-.+.|.||=-...|+.--- =||+-.|.-- ..-..|++.
T Consensus 143 ~~HaPP~gt~-~d-~~~g-~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~iG----~TivVNPG~~--~~g~yA~i~ 213 (226)
T COG2129 143 LTHAPPYGTL-LD-TPSG-YVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKIG----NTIVVNPGPL--GEGRYALIE 213 (226)
T ss_pred EecCCCCCcc-cc-CCCC-ccccchHHHHHHHHHhCCceEEEeeecccccccccC----CeEEECCCCc--cCceEEEEE
Confidence 1111111110 00 1112 135689999999999999999999977667765321 2666666432 345568888
Q ss_pred EecCCCceeEEEE
Q 008730 522 FEAPTLKPNIVTF 534 (556)
Q Consensus 522 ~~~~~~~~~~~~~ 534 (556)
+++. .+...+|
T Consensus 214 l~~~--~Vk~~~~ 224 (226)
T COG2129 214 LEKE--VVKLEQF 224 (226)
T ss_pred ecCc--EEEEEEe
Confidence 8333 5555565
No 312
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.35 E-value=0.0072 Score=59.42 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=23.0
Q ss_pred HHHHHHHCCCCEEEeeccccccCceEec
Q 008730 469 TKRFLQDNSLDLVVRSHEVKDEGYEIEH 496 (556)
Q Consensus 469 ~~~fl~~~~~~~iir~H~~~~~G~~~~~ 496 (556)
+.+.+++.++++++-||.-...+....|
T Consensus 190 ~~~ll~~~~v~~vl~GH~H~~~~~~p~h 217 (256)
T cd07401 190 FKDLLKKYNVTAYLCGHLHPLGGLEPVH 217 (256)
T ss_pred HHHHHHhcCCcEEEeCCccCCCcceeee
Confidence 7778889999999999999888845444
No 313
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.1 Score=49.14 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHH-hhCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHc
Q 008730 29 KYSQAIDLYSQAIELNSQNAVY------YANRAFAHTK-LEEYGSAIQDASKAIEIDPR------YPKGYYRRGAAYLAM 95 (556)
Q Consensus 29 ~~~~Al~~~~~al~~~p~~~~a------~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~------~~~~~~~lg~~~~~~ 95 (556)
+.++|+.++++++++.-+-... +..+|..|.. +.++++|+.+|+++-+-... -...+...|..-..+
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 4555555555555443322211 2234444432 24455555555554432111 122333334444444
Q ss_pred CCHHHHHHHHHHHHHhCCCC
Q 008730 96 GKFKEALKDFQQVKKLSPND 115 (556)
Q Consensus 96 g~~~~A~~~~~~al~l~p~~ 115 (556)
++|.+|+..|++..+..-++
T Consensus 168 eqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 55555555555554444333
No 314
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.29 E-value=0.049 Score=55.31 Aligned_cols=98 Identities=18% Similarity=0.296 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNS--------QN----------AVYYANRAFAHTKLEEYGSAIQDASKAI 75 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p--------~~----------~~a~~~lg~~~~~~g~~~~A~~~~~~al 75 (556)
.+.-...|...+++++|..|..-|+.||++.. .. ...-..+..||.++++.+.|+....+.+
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 45555677888999999999999999998732 11 2235578899999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730 76 EIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 76 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 111 (556)
.++|.++.-+...|.|...+.+|.+|...+.-|.-+
T Consensus 256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887766543
No 315
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.29 E-value=0.06 Score=59.55 Aligned_cols=110 Identities=17% Similarity=0.077 Sum_probs=93.5
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
..|+..-+....|..+.+.|++++|..+++..-...+++-..+.-+-.||..++++++|...|+++++.+|+ -+.++.+
T Consensus 38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~l 116 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHL 116 (932)
T ss_pred HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHH
Confidence 457777778888999999999999998888777778888888999999999999999999999999999999 8889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 119 (556)
-.+|.+.+.|.+-.+.--+..+..|+++...
T Consensus 117 FmayvR~~~yk~qQkaa~~LyK~~pk~~yyf 147 (932)
T KOG2053|consen 117 FMAYVREKSYKKQQKAALQLYKNFPKRAYYF 147 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccchH
Confidence 9999999998875555555555778776543
No 316
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=96.25 E-value=0.005 Score=57.19 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=32.0
Q ss_pred CCCeeeecccccCCCCh--HHHHHHHHhccccC----CCeEEEeccccccc
Q 008730 321 ENPYLFNGDFVDRGSFS--VEVILTLFAFKCMC----PSAIYLSRGNHESK 365 (556)
Q Consensus 321 ~~~~vflGD~vdrG~~s--~e~l~~l~~lk~~~----p~~v~~lrGNHE~~ 365 (556)
.+.+||+||++|.|+.+ .+....+..++..+ .-.++.|.||||..
T Consensus 43 PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 43 PDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred CCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 35699999999999964 33566555554222 24678899999974
No 317
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=0.061 Score=55.48 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=73.7
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 008730 24 AFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFK 99 (556)
Q Consensus 24 ~~~~g~~~~Al~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 99 (556)
-....|.+.+.+.|+.+|++=|.. +..|...|....+..+...|.+.+-.|+-..|.+- ..-..-.+-.++++++
T Consensus 376 Ele~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efD 454 (677)
T KOG1915|consen 376 ELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFD 454 (677)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHH
Confidence 355677777777777777777754 56666677777777777777777777777777642 2222223445667777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 008730 100 EALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133 (556)
Q Consensus 100 ~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~ 133 (556)
...+.|++-++.+|++-.+|...+.+...+|..+
T Consensus 455 RcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd 488 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSPENCYAWSKYAELETSLGDTD 488 (677)
T ss_pred HHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH
Confidence 7777777777777777777777777777777644
No 318
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.4 Score=45.36 Aligned_cols=131 Identities=23% Similarity=0.230 Sum_probs=90.4
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY- 81 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~- 81 (556)
.-.+.++.+..-|+.|--.++|..|=..|-++-++.-. .+..|...+.||. ..+.++|+.++++++++..+-
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhh
Confidence 34455677777788888888999988888888776421 2344555666664 459999999999999986553
Q ss_pred -----hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 82 -----PKGYYRRGAAYLAM-GKFKEALKDFQQVKKLSPNDPD------AAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 82 -----~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~------~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
...+..+|.+|..- .++++|+.+|++|-+....... .+...+.....+++ |.+||..++
T Consensus 108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leq--Y~~Ai~iye 178 (288)
T KOG1586|consen 108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQ--YSKAIDIYE 178 (288)
T ss_pred HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 33566888888765 8999999999999887544321 22222233333333 788877766
No 319
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.16 E-value=0.083 Score=52.63 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHHH
Q 008730 12 SRAEELKALANEAFR-AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYR 87 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~-~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~ 87 (556)
...+.|...|..-+. .++.+.|...|+.+++..|.+...|......+...++.+.|...|++++..-|... ..|-.
T Consensus 33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~ 112 (280)
T PF05843_consen 33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKK 112 (280)
T ss_dssp S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 345678888888777 57777799999999999999999999999999999999999999999998866654 57777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 119 (556)
....-...|+.+...+..+++.+..|++....
T Consensus 113 ~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 113 FIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 78888889999999999999999999854443
No 320
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=96.16 E-value=0.0096 Score=58.05 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=39.9
Q ss_pred eEeccCC--CCH---HHHHHHHHhc-CCCC---CCCCeeeecccccCCCC------------h----HHHHHHHHhcccc
Q 008730 296 TVCGDVH--GQF---YDLLNIFELN-GLPS---EENPYLFNGDFVDRGSF------------S----VEVILTLFAFKCM 350 (556)
Q Consensus 296 ~vigDiH--G~~---~~l~~~l~~~-~~~~---~~~~~vflGD~vdrG~~------------s----~e~l~~l~~lk~~ 350 (556)
++|+|+| +.. ..+..+++.+ +..+ .-+.+|++||++|+... . .++..++..+.
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-- 79 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP-- 79 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc--
Confidence 5899999 331 2223333322 2221 33679999999997310 0 12333444443
Q ss_pred CCCeEEEecccccccc
Q 008730 351 CPSAIYLSRGNHESKS 366 (556)
Q Consensus 351 ~p~~v~~lrGNHE~~~ 366 (556)
..-.|+++.||||...
T Consensus 80 ~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 80 SHIKIIIIPGNHDAVR 95 (243)
T ss_pred cCCeEEEeCCCCCccc
Confidence 2357999999999754
No 321
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.16 E-value=0.011 Score=37.58 Aligned_cols=31 Identities=26% Similarity=0.201 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 008730 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (556)
Q Consensus 50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 80 (556)
+++.+|.++.+.|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 322
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=96.16 E-value=0.0076 Score=60.47 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=41.1
Q ss_pred CcceEeccCCC----CHHHHHHHHHhcCCCCCCCCeeeecccccCCCCh-----HHHHHHHHhccccCCCeEEEeccccc
Q 008730 293 KHFTVCGDVHG----QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHE 363 (556)
Q Consensus 293 ~~i~vigDiHG----~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~p~~v~~lrGNHE 363 (556)
-+++|+||.|. ....+.++.+. ...-+-+|++||+++-+... -+.+..+..+.... -++.++||||
T Consensus 5 ~~f~v~gD~~~~~~~~~~~~~~l~~~---~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~--P~~~~~GNHD 79 (294)
T cd00839 5 FKFAVFGDMGQNTNNSTNTLDHLEKE---LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYV--PYMVTPGNHE 79 (294)
T ss_pred EEEEEEEECCCCCCCcHHHHHHHHhc---cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcC--CcEEcCcccc
Confidence 46999999995 23333333332 22345699999999544322 12222332232233 4888999999
Q ss_pred cccc
Q 008730 364 SKSM 367 (556)
Q Consensus 364 ~~~~ 367 (556)
....
T Consensus 80 ~~~~ 83 (294)
T cd00839 80 ADYN 83 (294)
T ss_pred cccC
Confidence 8654
No 323
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.15 E-value=0.03 Score=40.22 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.++.+|..++++|+|++|..+++.+++.+|+|..+.....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3455666666666666666666666666666655544433
No 324
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.15 E-value=0.12 Score=46.14 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
......+..........++.+++...+...--+.|+.++.-..-|..++..|++.+|+..++.+....|..+.+--.++.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34567788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 128 (556)
|++.+++.+==. +-+++++.. .++.+......+...
T Consensus 87 CL~~~~D~~Wr~-~A~evle~~-~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 87 CLYALGDPSWRR-YADEVLESG-ADPDARALVRALLAR 122 (160)
T ss_pred HHHHcCChHHHH-HHHHHHhcC-CChHHHHHHHHHHHh
Confidence 999999864211 122344433 356665555544433
No 325
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.15 E-value=0.017 Score=56.26 Aligned_cols=83 Identities=20% Similarity=0.160 Sum_probs=73.9
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
....+..-.+.|....+.|+.++|...|+.|++++|.+++++...|......++.-+|-++|-+|+.++|.+.+++.+++
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 34456666677888899999999999999999999999999999999988889999999999999999999999999887
Q ss_pred HHH
Q 008730 90 AAY 92 (556)
Q Consensus 90 ~~~ 92 (556)
...
T Consensus 192 RT~ 194 (472)
T KOG3824|consen 192 RTT 194 (472)
T ss_pred ccc
Confidence 643
No 326
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=96.09 E-value=0.0074 Score=59.10 Aligned_cols=66 Identities=26% Similarity=0.282 Sum_probs=44.1
Q ss_pred cceEeccCCCCH---------HHHHHHHHhcCCCCCCCCeeeecccccCCCChH-----HHHHHHHhccccCCCeEEEec
Q 008730 294 HFTVCGDVHGQF---------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-----EVILTLFAFKCMCPSAIYLSR 359 (556)
Q Consensus 294 ~i~vigDiHG~~---------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~-----e~l~~l~~lk~~~p~~v~~lr 359 (556)
+|+.++|+||.+ ..+..++++..-...+..+|..||+++.++.+. .++..+..+. -.+ +..
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g----~d~-~~~ 76 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNALG----YDA-VTI 76 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhcC----CCE-Eee
Confidence 488999999887 556666766544333445788999999887653 4555554442 233 345
Q ss_pred ccccc
Q 008730 360 GNHES 364 (556)
Q Consensus 360 GNHE~ 364 (556)
||||.
T Consensus 77 GNHe~ 81 (252)
T cd00845 77 GNHEF 81 (252)
T ss_pred ccccc
Confidence 99996
No 327
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=96.08 E-value=0.011 Score=58.80 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=49.5
Q ss_pred CCcceEeccCCCCHHH--HHHHHHhcCCCCCCCCeeeecccccC--CCChHHHHHHHHhccccCCCeEEEeccccccccc
Q 008730 292 GKHFTVCGDVHGQFYD--LLNIFELNGLPSEENPYLFNGDFVDR--GSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 367 (556)
Q Consensus 292 ~~~i~vigDiHG~~~~--l~~~l~~~~~~~~~~~~vflGD~vdr--G~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~ 367 (556)
+.+|+-++|+|=.... ..+.+....... .|.+++.|||+|+ -+....+...|..|+ .|-.+|.+.||||...-
T Consensus 44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~-~DlivltGD~~~~~~~~~~~~~~~~L~~L~--~~~gv~av~GNHd~~~~ 120 (284)
T COG1408 44 GLKIVQLSDLHSLPFREEKLALLIAIANEL-PDLIVLTGDYVDGDRPPGVAALALFLAKLK--APLGVFAVLGNHDYGVD 120 (284)
T ss_pred CeEEEEeehhhhchhhHHHHHHHHHHHhcC-CCEEEEEeeeecCCCCCCHHHHHHHHHhhh--ccCCEEEEecccccccc
Confidence 3579999999976655 222333322222 2779999999995 445556666777776 45579999999976543
No 328
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.07 E-value=0.012 Score=38.64 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKK 110 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~ 110 (556)
|.++|.+|..+|++++|+.+|+++|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555666666666666655443
No 329
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.05 E-value=0.0082 Score=56.10 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=27.3
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 008730 26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (556)
Q Consensus 26 ~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 80 (556)
+.+|.+.|.+.|.+++++-|+....|+.+|....+.|+++.|.+.|+++++++|.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3444444555555555555554445555554444445555555555555555444
No 330
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=96.03 E-value=0.0085 Score=55.58 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=44.0
Q ss_pred eccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHH-HHHHHHhccccC---------------------CCeE
Q 008730 298 CGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVE-VILTLFAFKCMC---------------------PSAI 355 (556)
Q Consensus 298 igDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e-~l~~l~~lk~~~---------------------p~~v 355 (556)
-=|++|+=.-|.++++..-+.-..+.++||||++|.|--+-+ --......+..+ .-.+
T Consensus 22 rld~~~~D~YL~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (193)
T cd08164 22 RLDLFGNDYFLGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPL 101 (193)
T ss_pred eehhhhhHHHHHHHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceE
Confidence 346678777788888877655555679999999998743322 122222222111 2467
Q ss_pred EEeccccccc
Q 008730 356 YLSRGNHESK 365 (556)
Q Consensus 356 ~~lrGNHE~~ 365 (556)
++|.||||.-
T Consensus 102 i~V~GNHDIG 111 (193)
T cd08164 102 INIAGNHDVG 111 (193)
T ss_pred EEECCcccCC
Confidence 8999999984
No 331
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.03 E-value=0.089 Score=54.74 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 008730 33 AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKL 111 (556)
Q Consensus 33 Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l 111 (556)
-...|+.|+...+.+...|.+...-..+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|.+.+.++|+.
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 35679999999999999999988766677779999999999999999999999999998888776 99999999999999
Q ss_pred CCCCHHHHHHHHHH
Q 008730 112 SPNDPDAAQKVKEC 125 (556)
Q Consensus 112 ~p~~~~~~~~l~~~ 125 (556)
+|+++..+...-+.
T Consensus 170 npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 170 NPDSPKLWKEYFRM 183 (568)
T ss_pred CCCChHHHHHHHHH
Confidence 99999887665544
No 332
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.03 E-value=0.013 Score=38.40 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=12.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 008730 17 LKALANEAFRAKKYSQAIDLYSQAI 41 (556)
Q Consensus 17 ~~~lg~~~~~~g~~~~Al~~~~~al 41 (556)
|..+|.+|.+.|+|++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 333
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.03 E-value=0.071 Score=43.10 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 008730 34 IDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (556)
Q Consensus 34 l~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 81 (556)
+..++++++.+|++..+.+.+|..+...|++++|++.+-.+++.++++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 344555555566666666666666666666666666665555555543
No 334
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.15 Score=49.08 Aligned_cols=103 Identities=21% Similarity=0.260 Sum_probs=84.2
Q ss_pred HHHHHHHHHH----HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 16 ELKALANEAF----RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 16 ~~~~lg~~~~----~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
.+.++|.++. ..+++.+|.-+|++.-+..|..+......+.|.+.+++|++|...++.++..++++++++.++-.+
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL 250 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 4445555554 345789999999998887888899999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHH-HHHHHHhCCCCHHH
Q 008730 92 YLAMGKFKEALKD-FQQVKKLSPNDPDA 118 (556)
Q Consensus 92 ~~~~g~~~~A~~~-~~~al~l~p~~~~~ 118 (556)
-..+|.-.++..- +.+.....|+++-+
T Consensus 251 a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 251 ALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 9999987766554 44555556776554
No 335
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=96.02 E-value=0.0065 Score=55.75 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=29.8
Q ss_pred CCCeeeecccccCCCChH--H---HHHHHHhccc-c----CCCeEEEecccccccc
Q 008730 321 ENPYLFNGDFVDRGSFSV--E---VILTLFAFKC-M----CPSAIYLSRGNHESKS 366 (556)
Q Consensus 321 ~~~~vflGD~vdrG~~s~--e---~l~~l~~lk~-~----~p~~v~~lrGNHE~~~ 366 (556)
.+.+||+||++|.|.... + .+..+..+.. . .+-.++++.||||...
T Consensus 46 pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 46 PDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred CCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 456999999999887432 2 3333323211 1 1356999999999864
No 336
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.96 E-value=0.12 Score=59.91 Aligned_cols=123 Identities=12% Similarity=-0.028 Sum_probs=72.6
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCH-------------------------------------HH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-NSQNA-------------------------------------VY 50 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-~p~~~-------------------------------------~a 50 (556)
.+|+.+-.|.+.-....+.++.++|.+.+++||.. ++... ..
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V 1532 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTV 1532 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHH
Confidence 35666777777777777888888888888888854 33321 12
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 008730 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKA 128 (556)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~ 128 (556)
+..|..+|.+.+++++|.+.++.-++..-+....|..+|..++++++-++|...+.+||+.-|. +.+.....+++..+
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 3334444555555555555555555555555556666666666666666666666666666555 34444444544444
Q ss_pred Hhh
Q 008730 129 VKK 131 (556)
Q Consensus 129 ~~~ 131 (556)
.|.
T Consensus 1613 ~GD 1615 (1710)
T KOG1070|consen 1613 YGD 1615 (1710)
T ss_pred cCC
Confidence 443
No 337
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.94 E-value=0.046 Score=44.19 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhh
Q 008730 66 SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKK 131 (556)
Q Consensus 66 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~ 131 (556)
..+..++++++.+|++..+.+.+|..+...|++++|++.+-.+++.++++ ..+...+-.+...+|.
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 35778899999999999999999999999999999999999999998866 6677777777777775
No 338
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.92 E-value=0.19 Score=43.23 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHhh---CHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730 47 NAVYYANRAFAHTKLE---EYGSAIQDASKAIE-IDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (556)
Q Consensus 47 ~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~-l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 121 (556)
..+..+++|-++.+.. +..+.+..++..++ -+|. .-+..|.+|..++++++|+.|+.+.+..++..|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3566788888887764 46778999999996 4554 46688999999999999999999999999999999999877
Q ss_pred HHHHHHHHhh
Q 008730 122 VKECEKAVKK 131 (556)
Q Consensus 122 l~~~~~~~~~ 131 (556)
...+...+.+
T Consensus 111 k~~ied~itk 120 (149)
T KOG3364|consen 111 KETIEDKITK 120 (149)
T ss_pred HHHHHHHHhh
Confidence 7766655443
No 339
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.90 E-value=0.081 Score=52.84 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC----
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----N------AVYYANRAFAHTKLEEYGSAIQDASKAIEID---- 78 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~----~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---- 78 (556)
..+.+..+|..+....|+++|+-+..+|.++-.+ + ..+++.++.++..+|+.-+|.++++++.++.
T Consensus 161 Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 161 ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG 240 (518)
T ss_pred eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence 3577889999999999999999999999988432 2 3456778889999999999999999998762
Q ss_pred --CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730 79 --PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (556)
Q Consensus 79 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 112 (556)
+-.......+|.+|...|+.+.|..-|+.|....
T Consensus 241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 241 DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 3346678889999999999999999999998764
No 340
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.016 Score=57.72 Aligned_cols=118 Identities=26% Similarity=0.423 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNS-----------Q--------NAVYYANRAFAHTKLEEYGSAIQDASKA 74 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p-----------~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~a 74 (556)
.+...+.|...++.++|+.|..-|.++++.-. + -...+.+++.+-.+.+.+..|+.....+
T Consensus 222 ~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~ 301 (372)
T KOG0546|consen 222 EEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEA 301 (372)
T ss_pred hhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccc
Confidence 34455678889999999999999999987521 1 1234567888889999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 75 IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 75 l~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
++.+++...+++.++..+..+.++++|++.++.+....|++......+..+.....+
T Consensus 302 ~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 302 LRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred cccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999998887777766555444
No 341
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.84 E-value=0.015 Score=35.66 Aligned_cols=30 Identities=37% Similarity=0.444 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCC
Q 008730 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDP 79 (556)
Q Consensus 50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 79 (556)
++..+|.++..++++++|+..++++++.+|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555554444
No 342
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.84 E-value=0.015 Score=35.73 Aligned_cols=32 Identities=38% Similarity=0.781 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (556)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 114 (556)
.+++.+|.++..++++++|+..+++++++.|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35666666666677777777777666666654
No 343
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=0.1 Score=45.28 Aligned_cols=116 Identities=26% Similarity=0.373 Sum_probs=82.5
Q ss_pred ceEeccCCC--CHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccC
Q 008730 295 FTVCGDVHG--QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 372 (556)
Q Consensus 295 i~vigDiHG--~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g 372 (556)
+.|+||+|= ...+|-.-|++.=.|..-.+++++|++. |.|++++|..+. +.++++||--|.-
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki~hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~------- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKIQHILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN------- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCceeEEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc-------
Confidence 679999993 4455655566655666666799999976 789999998875 7899999976553
Q ss_pred chhhHHhhhhHHHHHHHHHHhccccccccc--C-CeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCC
Q 008730 373 FEGEVRSKLSETFVELFAEVFCCLPLAHVL--N-QKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP 449 (556)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i--~-~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~ 449 (556)
...|..-++ + =++-|+||-. -+=|+||
T Consensus 67 ---------------------~~yP~~kvvtvGqfkIG~chGhq---------------------------ViP~gd~-- 96 (183)
T KOG3325|consen 67 ---------------------LKYPENKVVTVGQFKIGLCHGHQ---------------------------VIPWGDP-- 96 (183)
T ss_pred ---------------------ccCCccceEEeccEEEEeecCcE---------------------------eecCCCH--
Confidence 123333222 2 2788899854 1236664
Q ss_pred CCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCce
Q 008730 450 LPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE 493 (556)
Q Consensus 450 ~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~ 493 (556)
+.+.-.-+..+++.++-||+...+-|+
T Consensus 97 -----------------~sL~~LaRqldvDILl~G~Th~f~Aye 123 (183)
T KOG3325|consen 97 -----------------ESLALLARQLDVDILLTGHTHKFEAYE 123 (183)
T ss_pred -----------------HHHHHHHHhcCCcEEEeCCceeEEEEE
Confidence 466666778899999999999877776
No 344
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.12 Score=55.24 Aligned_cols=96 Identities=25% Similarity=0.251 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.+++-|...++..+|..+++.|...+..-|.+ +....+++.||..+.+.+.|.++++.|-+.+|.++-..+..-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45677888899999999999999999988775 456778899999999999999999999999999988888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 008730 90 AAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l 111 (556)
.+...-+.-++|+....+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 8888889999999888877665
No 345
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.73 E-value=0.075 Score=56.96 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=88.1
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHH
Q 008730 26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYYRRGAAYLAMGKFKEA 101 (556)
Q Consensus 26 ~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~~A 101 (556)
...+.+.|.+.+....+..|+.+-.++..|..+...|+.++|++.|++++...... .-.++.+|.++..+.+|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 34577888899999999999999889999999999999999999999888533322 34688899999999999999
Q ss_pred HHHHHHHHHhCCCCHHH-HHHHHHHHHHHhhh----h-HHHHhcCCCCC
Q 008730 102 LKDFQQVKKLSPNDPDA-AQKVKECEKAVKKL----K-FEEAIAVPESE 144 (556)
Q Consensus 102 ~~~~~~al~l~p~~~~~-~~~l~~~~~~~~~~----~-~~~Ai~~~~~~ 144 (556)
..++.+..+.+.-.... .+..|.|+..+++. . .++|.+++.+.
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 99999988876543333 34445566666653 1 25666655543
No 346
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=95.72 E-value=0.014 Score=61.16 Aligned_cols=74 Identities=20% Similarity=0.217 Sum_probs=49.3
Q ss_pred CcceEeccCC-C------------CHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhcc-ccC--CCeEE
Q 008730 293 KHFTVCGDVH-G------------QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFK-CMC--PSAIY 356 (556)
Q Consensus 293 ~~i~vigDiH-G------------~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk-~~~--p~~v~ 356 (556)
+||..++|+| | .+..|..+++.+.-. ..|-+|.-||+.|++.-|.+++..+...- ... .=.||
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~-~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~ 79 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEE-KVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVV 79 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHc-cCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEE
Confidence 3688899999 4 233444444444322 34679999999999988887776554432 111 23699
Q ss_pred Eeccccccccc
Q 008730 357 LSRGNHESKSM 367 (556)
Q Consensus 357 ~lrGNHE~~~~ 367 (556)
+|.||||...-
T Consensus 80 ~I~GNHD~~~~ 90 (390)
T COG0420 80 VIAGNHDSPSR 90 (390)
T ss_pred EecCCCCchhc
Confidence 99999997653
No 347
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.65 E-value=0.11 Score=55.57 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=79.9
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-hH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-PK 83 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~ 83 (556)
.-|+.+-.++..|..+...|+.++|++.|++++..... ..-.++.+|-++.-+.+|++|..++.+..+.+.-. .-
T Consensus 262 ~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~ 341 (468)
T PF10300_consen 262 RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAF 341 (468)
T ss_pred hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHH
Confidence 34667777888999999999999999999998864433 23457788999999999999999999998875432 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730 84 GYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~l 111 (556)
..|..|.|+...++.+.+.+.-++|.++
T Consensus 342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l 369 (468)
T PF10300_consen 342 YAYLAAACLLMLGREEEAKEHKKEAEEL 369 (468)
T ss_pred HHHHHHHHHHhhccchhhhhhHHHHHHH
Confidence 5566788999999887666666666544
No 348
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.081 Score=52.34 Aligned_cols=133 Identities=12% Similarity=0.046 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-NSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
|...-++.---.+++..|+...-...+++.+-. +|+. ....-.++.++.+.|-|++|.+..+++++++|.+..+..
T Consensus 134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~H 213 (491)
T KOG2610|consen 134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASH 213 (491)
T ss_pred chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHH
Confidence 444444555556778889999999999999887 5555 445556788899999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~ 143 (556)
.++.++.-.++++++.+...+.-..=.. .-.+++....+...+....+++|++++..
T Consensus 214 a~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 214 AKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 9999999999999999988765322111 11233333444444444558888887763
No 349
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.30 E-value=0.43 Score=48.84 Aligned_cols=122 Identities=17% Similarity=0.119 Sum_probs=100.1
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCC---
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPR--- 80 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~--- 80 (556)
....+..|...+....+.|.++.|...+.++...++. .+.+....+..+...|+..+|+..++..+.. ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 3456788999999999999999999999999987632 4677888899999999999999999888871 100
Q ss_pred -----------------------------ChHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730 81 -----------------------------YPKGYYRRGAAYLAM------GKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (556)
Q Consensus 81 -----------------------------~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~l~~~ 125 (556)
...++..+|...... +..+++++.|+++.+++|+...++..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 135677777777777 889999999999999999999999999988
Q ss_pred HHHHhh
Q 008730 126 EKAVKK 131 (556)
Q Consensus 126 ~~~~~~ 131 (556)
+..+-.
T Consensus 302 ~~~~~~ 307 (352)
T PF02259_consen 302 NDKLLE 307 (352)
T ss_pred HHHHHH
Confidence 766543
No 350
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.22 E-value=0.026 Score=52.89 Aligned_cols=61 Identities=23% Similarity=0.440 Sum_probs=56.8
Q ss_pred HHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008730 57 AHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (556)
Q Consensus 57 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 117 (556)
...+.++.+.|.+.|.+++.+-|+....|+++|....+.|+.+.|.+.|++.++++|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4456789999999999999999999999999999999999999999999999999998754
No 351
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.22 E-value=0.0047 Score=61.04 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=71.0
Q ss_pred HHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHH
Q 008730 58 HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEA 137 (556)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~A 137 (556)
.+..|.++.|++.|..++.++|.....|-.++.++..+++...|+..|..|++++|+...-+...+.+...++. +++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~--~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN--WEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc--hHHH
Confidence 45678899999999999999999999999999999999999999999999999999998888888888777777 4555
Q ss_pred hc
Q 008730 138 IA 139 (556)
Q Consensus 138 i~ 139 (556)
-.
T Consensus 202 a~ 203 (377)
T KOG1308|consen 202 AH 203 (377)
T ss_pred HH
Confidence 33
No 352
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.22 E-value=0.34 Score=43.36 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (556)
Q Consensus 49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 128 (556)
..+.....+-...++.+++...+...-.+.|..++.-..-|..+...|++.+|+..++.+.+..|..+.+...++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34555666667788999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hhhhh
Q 008730 129 VKKLK 133 (556)
Q Consensus 129 ~~~~~ 133 (556)
++...
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 88754
No 353
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.20 E-value=0.57 Score=48.13 Aligned_cols=85 Identities=15% Similarity=0.093 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHH---ccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHHhC
Q 008730 12 SRAEELKALANEAFR---AKKYSQAIDLYSQA-IELNSQNAVYYANRAFAHTKL---------EEYGSAIQDASKAIEID 78 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~---~g~~~~Al~~~~~a-l~~~p~~~~a~~~lg~~~~~~---------g~~~~A~~~~~~al~l~ 78 (556)
+.....+..|-++-+ .|+.++|+..+..+ ....+.+++.+..+|.+|-.+ ...++|+.+|+++.+++
T Consensus 177 ~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 177 NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 344556677777777 89999999999884 445667888888888877543 24788999999999988
Q ss_pred CCChHHHHHHHHHHHHcCC
Q 008730 79 PRYPKGYYRRGAAYLAMGK 97 (556)
Q Consensus 79 p~~~~~~~~lg~~~~~~g~ 97 (556)
|+. ..=.|++.++...|.
T Consensus 257 ~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 257 PDY-YSGINAATLLMLAGH 274 (374)
T ss_pred ccc-cchHHHHHHHHHcCC
Confidence 643 233444444444443
No 354
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.92 E-value=0.12 Score=54.75 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=91.7
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA--VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
.+.+...+..-+..+..+|+..+|+.++..++...|... .++..+|.++.+.|...+|--.+..|+.-.|.....++.
T Consensus 209 ~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~ 288 (886)
T KOG4507|consen 209 NTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYT 288 (886)
T ss_pred CchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccccccee
Confidence 344444444444455678999999999999999988754 467889999999999999999999999888887888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 119 (556)
+|.++..++++.....+|..+.+.+|....+.
T Consensus 289 l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~ 320 (886)
T KOG4507|consen 289 LGNIYAMLGEYNHSVLCYDHALQARPGFEQAI 320 (886)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhccCcchhHHH
Confidence 99999999999999999999999999765443
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.78 E-value=0.34 Score=37.65 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHhhCHHHHHHHHHHHHHh
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR---AFAHTKLEEYGSAIQDASKAIEI 77 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~l---g~~~~~~g~~~~A~~~~~~al~l 77 (556)
+.+....+.|..++.+.+.++|+..++++++..++....+..+ ..+|...|+|++++++.-+-+.+
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678889999999999999999999999988877665555 46788899999988877665544
No 356
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.71 E-value=0.037 Score=57.15 Aligned_cols=82 Identities=15% Similarity=0.083 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-h--------CC---------CCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIE-L--------NS---------QNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~-~--------~p---------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 74 (556)
..-.|.++|.++++.|.|.-+..+|.+|++ . .| ..-+..++.|..|...|+.-.|.++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 445678999999999999999999999996 1 12 24578999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHH
Q 008730 75 IEIDPRYPKGYYRRGAAYLA 94 (556)
Q Consensus 75 l~l~p~~~~~~~~lg~~~~~ 94 (556)
++..-.+|..|.++|.|-..
T Consensus 362 v~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999987653
No 357
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.70 E-value=0.47 Score=41.76 Aligned_cols=87 Identities=13% Similarity=-0.011 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
....+.+.........+.+++...+...--+.|+.++.-..-|..++..|++.+|+..++.+..-.+..+.+.-.++.|+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 34556666666677888888888888777788888888888888888888888888888888877777777777788888
Q ss_pred HHcCCHH
Q 008730 93 LAMGKFK 99 (556)
Q Consensus 93 ~~~g~~~ 99 (556)
+.+|+.+
T Consensus 89 ~al~Dp~ 95 (153)
T TIGR02561 89 NAKGDAE 95 (153)
T ss_pred HhcCChH
Confidence 8888754
No 358
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.6 Score=49.78 Aligned_cols=106 Identities=18% Similarity=0.050 Sum_probs=82.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH-HHHhCCCChHHHHHH------HHHH
Q 008730 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK-AIEIDPRYPKGYYRR------GAAY 92 (556)
Q Consensus 20 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~-al~l~p~~~~~~~~l------g~~~ 92 (556)
+...+...++...|......++..+|++..+..++|.+....|....++..+.+ +....|++......+ +..+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 566666778888888888888888999988988888888777766555555544 888888887766655 7777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (556)
Q Consensus 93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~ 125 (556)
..+++..++...++++..+.|+++.+...+...
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 888888888888899998888887766665555
No 359
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=94.61 E-value=0.056 Score=48.50 Aligned_cols=45 Identities=29% Similarity=0.301 Sum_probs=33.1
Q ss_pred CCCCCeeeecccc--cCCCChHHHHHHHHhccccCCCeEEEeccccccccc
Q 008730 319 SEENPYLFNGDFV--DRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 367 (556)
Q Consensus 319 ~~~~~~vflGD~v--drG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~ 367 (556)
...|.++.-||+- =|=+...+=+.+|-+| |+.-+++|||||.+.-
T Consensus 42 ~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw~ 88 (230)
T COG1768 42 SPEDIVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWWS 88 (230)
T ss_pred ChhhEEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCccccc
Confidence 3456688889985 3455666667777655 7889999999998753
No 360
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.59 E-value=0.56 Score=49.20 Aligned_cols=114 Identities=18% Similarity=0.113 Sum_probs=75.0
Q ss_pred CCChhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-
Q 008730 8 NSSVSRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR- 80 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~- 80 (556)
......+..++..|...-+ ..+..+....+-+.+...+.+ ..+...+|.|..++|+.++|++.++..++..|.
T Consensus 213 A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~ 292 (539)
T PF04184_consen 213 ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL 292 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc
Confidence 3445667777666655433 223333333333333333333 456677889999999999999999999887775
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Q 008730 81 -YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-PNDPDAAQK 121 (556)
Q Consensus 81 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~ 121 (556)
+..++.++..++..++.|.++.+.+.+.-++. |+.+...+.
T Consensus 293 ~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 293 DNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred chhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 46688899999999999999988888864432 444444333
No 361
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=94.39 E-value=0.032 Score=52.26 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=42.1
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHH--------------------------HHHHh
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI--------------------------LTLFA 346 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l--------------------------~~l~~ 346 (556)
++|..++|.||+++.|.++.+.+.-. ..|-+||+||++-.+..+-|-. .++..
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~-~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~ 84 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEK-GPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRI 84 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHH-T-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhcccc-CCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHH
Confidence 46999999999999999988766433 3456999999986544333322 23333
Q ss_pred ccccCCCeEEEecccccccc
Q 008730 347 FKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 347 lk~~~p~~v~~lrGNHE~~~ 366 (556)
| -..+--++.|+||||...
T Consensus 85 L-~~~~~p~~~vPG~~Dap~ 103 (255)
T PF14582_consen 85 L-GELGVPVFVVPGNMDAPE 103 (255)
T ss_dssp H-HCC-SEEEEE--TTS-SH
T ss_pred H-HhcCCcEEEecCCCCchH
Confidence 3 344567889999999854
No 362
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=94.25 E-value=0.051 Score=54.03 Aligned_cols=65 Identities=22% Similarity=0.322 Sum_probs=38.8
Q ss_pred cceEeccCCCCH----------------HHHHHHHHhcCCCCCCCCeee-ecccccCCCCh-----------HHHHHHHH
Q 008730 294 HFTVCGDVHGQF----------------YDLLNIFELNGLPSEENPYLF-NGDFVDRGSFS-----------VEVILTLF 345 (556)
Q Consensus 294 ~i~vigDiHG~~----------------~~l~~~l~~~~~~~~~~~~vf-lGD~vdrG~~s-----------~e~l~~l~ 345 (556)
+|+.++|+||++ ..+..++++..-... +.+++ .||+++..+.+ ..++..+-
T Consensus 2 ~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~-~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln 80 (277)
T cd07410 2 RILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENP-NTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMN 80 (277)
T ss_pred eEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCC-CeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHH
Confidence 378899999986 335556665543322 32333 69999876522 23455554
Q ss_pred hccccCCCeEEEecccccc
Q 008730 346 AFKCMCPSAIYLSRGNHES 364 (556)
Q Consensus 346 ~lk~~~p~~v~~lrGNHE~ 364 (556)
.+. ++ ++..||||.
T Consensus 81 ~~g---~d--~~~lGNHe~ 94 (277)
T cd07410 81 ALG---YD--AGTLGNHEF 94 (277)
T ss_pred hcC---CC--EEeecccCc
Confidence 443 22 444699995
No 363
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.20 E-value=0.73 Score=42.41 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 111 (556)
.++..+|.-|.+.|++++|++.|.++....... ...++++-.+....+++.....+..+|-.+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455566666666666666666666655443221 345555555666666666666666666554
No 364
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.18 E-value=0.3 Score=47.46 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (556)
Q Consensus 49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~ 125 (556)
....++=.++.+.++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++..|+++.+-......
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34555667788889999999999999999999999999999999999999999999999999999998876555544
No 365
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.18 E-value=0.66 Score=47.66 Aligned_cols=116 Identities=13% Similarity=0.066 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---hhCHHHHHHHHHHH-HHhCCCChHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL----NSQNAVYYANRAFAHTK---LEEYGSAIQDASKA-IEIDPRYPKGY 85 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~----~p~~~~a~~~lg~~~~~---~g~~~~A~~~~~~a-l~l~p~~~~~~ 85 (556)
+....++-..|....+|+.-+...+..-.+ -++.....+.+|.++.+ .|+.++|++.+..+ ....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 445556666788888998888888776665 45567778888999988 89999999999884 45566788899
Q ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 86 YRRGAAYLAM---------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 86 ~~lg~~~~~~---------g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
..+|.+|... ...++|+..|.++.+++|+. ..=.+++.++...|
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcC
Confidence 9999988643 24678999999999998653 33334444444433
No 366
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=0.35 Score=47.02 Aligned_cols=78 Identities=21% Similarity=0.281 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
+-..++=..+...++++.|+.+.++.+.++|.++.-+.-+|.+|.++|.+.-|+.+++..++..|+.+.+-.-.+...
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 344456677889999999999999999999999999999999999999999999999999999999988776655443
No 367
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.14 E-value=0.12 Score=50.60 Aligned_cols=89 Identities=8% Similarity=0.039 Sum_probs=76.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730 37 YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR-RGAAYLAMGKFKEALKDFQQVKKLSPND 115 (556)
Q Consensus 37 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~l~p~~ 115 (556)
|.++....|+++..|...+.-..+.|.|.+--..|.++++.+|.+++.|.. -+.-+...++.+.|++.+.++++.+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 445555678899999999988888899999999999999999999999987 4556778899999999999999999999
Q ss_pred HHHHHHHHHH
Q 008730 116 PDAAQKVKEC 125 (556)
Q Consensus 116 ~~~~~~l~~~ 125 (556)
+..|...-+.
T Consensus 176 p~iw~eyfr~ 185 (435)
T COG5191 176 PRIWIEYFRM 185 (435)
T ss_pred chHHHHHHHH
Confidence 9888665544
No 368
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=1 Score=43.36 Aligned_cols=114 Identities=16% Similarity=0.141 Sum_probs=97.8
Q ss_pred HHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008730 18 KALANEAF-RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (556)
Q Consensus 18 ~~lg~~~~-~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 95 (556)
+...++.+ +...-+.|+..-..++.++|.+...|..+-.++..++ +..+-++++...++-+|+|..+|..+-.+....
T Consensus 46 m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l 125 (318)
T KOG0530|consen 46 MDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELL 125 (318)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHh
Confidence 33344444 4455677999999999999999999999888887765 578889999999999999999999999999999
Q ss_pred CCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 96 GKFK-EALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 96 g~~~-~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
|+.. .-++..+.++..+.+|-.+|.....+....+.
T Consensus 126 ~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~ 162 (318)
T KOG0530|consen 126 GDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD 162 (318)
T ss_pred cCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhh
Confidence 9988 88999999999999999999999988887776
No 369
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.89 E-value=0.45 Score=54.78 Aligned_cols=106 Identities=16% Similarity=0.196 Sum_probs=84.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHhCCCChHHHH
Q 008730 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLE-------EYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g-------~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
+....++++..+.|++|+..|++.-.-.|.. -++.+..|.+..... .+++|+..|++. .-.|.-|--|.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 556 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYL 556 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHH
Confidence 3445678889999999999999999999875 467788888877642 366777777663 34566677889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 123 (556)
..|.+|.++|+++|-+++|..|++..|.+|..-...-
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRD 593 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 9999999999999999999999999999876544333
No 370
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.75 E-value=1.6 Score=43.45 Aligned_cols=111 Identities=18% Similarity=0.117 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHhCCCC
Q 008730 14 AEELKALANEAFR----AKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLE-------EYGSAIQDASKAIEIDPRY 81 (556)
Q Consensus 14 a~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~-~~a~~~lg~~~~~~g-------~~~~A~~~~~~al~l~p~~ 81 (556)
+.+.+.+|..+.. ..|..+|...|++|.+..-.. ..+...+|.+|..-. +...|+..|.++.... +
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~ 186 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N 186 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence 4456667777765 457788888888877765443 344666676665531 2336777777776665 5
Q ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730 82 PKGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (556)
Q Consensus 82 ~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 129 (556)
+.+.+.+|.+|.. ..++++|..+|.+|-+... ..+...++ ++...
T Consensus 187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~ 235 (292)
T COG0790 187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLN 235 (292)
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhc
Confidence 6777777777754 3367788888888877765 66666666 44333
No 371
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.69 E-value=0.78 Score=39.61 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 13 RAEELKALANEAFRAK---KYSQAIDLYSQAIE-LNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g---~~~~Al~~~~~al~-~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
+.+..++++.++.... +..+.+.+++..++ ..|.. -+..+.++..++++++|+.|+.+++..++.+|+|..+.-.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4566778888887665 45668999999997 45543 4677889999999999999999999999999999887665
Q ss_pred HHHHH
Q 008730 88 RGAAY 92 (556)
Q Consensus 88 lg~~~ 92 (556)
.-.+.
T Consensus 111 k~~ie 115 (149)
T KOG3364|consen 111 KETIE 115 (149)
T ss_pred HHHHH
Confidence 44443
No 372
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.77 Score=45.06 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008730 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (556)
Q Consensus 49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 107 (556)
+.-..-+.-....|++.+|...+..+++.+|++.++...++.+|...|+.++|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 33455666788899999999999999999999999999999999999999877666653
No 373
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=93.64 E-value=0.12 Score=53.06 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=37.6
Q ss_pred HHHHHHhcCCCCCCCCeeeecccccCCCCh--HHHHHHHHhccccCC----CeEEEecccccc
Q 008730 308 LLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCP----SAIYLSRGNHES 364 (556)
Q Consensus 308 l~~~l~~~~~~~~~~~~vflGD~vdrG~~s--~e~l~~l~~lk~~~p----~~v~~lrGNHE~ 364 (556)
|.+.+...-+.-..+.++||||++|-|... -|--.....++..+| ..++.+.||||-
T Consensus 81 lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 81 LRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred HHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 445666555555556799999999998764 233334444443333 478888999996
No 374
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.64 E-value=0.77 Score=50.41 Aligned_cols=113 Identities=18% Similarity=0.138 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHh
Q 008730 13 RAEELKALANEAFR-----AKKYSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLE-----EYGSAIQDASKAIEI 77 (556)
Q Consensus 13 ~a~~~~~lg~~~~~-----~g~~~~Al~~~~~al~~-----~p~~~~a~~~lg~~~~~~g-----~~~~A~~~~~~al~l 77 (556)
.+.+...+|.+++. .+|.+.|+.+|+.+.+- .-.++.+.+.+|.+|.+.. +++.|+..|.++...
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 44555666666653 46899999999999771 1225667888999998843 678899999999877
Q ss_pred CCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730 78 DPRYPKGYYRRGAAYLAMG---KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (556)
Q Consensus 78 ~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 129 (556)
. ++.+.+.+|.++..-. ++..|.++|..|.+. .+..+...++.|+..-
T Consensus 323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG 373 (552)
T ss_pred C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence 5 5678999999998766 578999999988765 5788889999888653
No 375
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=2.8 Score=40.13 Aligned_cols=129 Identities=19% Similarity=0.131 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------h
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-----SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------P 82 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~ 82 (556)
+.++-..|..+.....+.++..+|++|..+. |+.+..-...+.-..+..+.++|++.|++++.+--.. .
T Consensus 71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 4555566667777888999999999999874 4444444455555667888999999999998763221 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 83 KGYYRRGAAYLAMGKFKEALKDFQQVKK----LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+.+-..+.+|.+...+++|-..+.+-.. .+..+......++.+.-.+-..+|..|-..+.
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 4566778889999999998877766433 33344444555666555555555666655554
No 376
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.61 E-value=1.3 Score=47.76 Aligned_cols=127 Identities=15% Similarity=0.141 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC----------
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDP---------- 79 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p---------- 79 (556)
-..|..+|..|-..|+.+.|...|++|++..-.. +..|..-|..-++..+++.|+...++|...-.
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 4568888999999999999999999998876332 57788888888888889999998888875421
Q ss_pred --------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 80 --------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 80 --------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++...|..++......|=++.-...|++.+.+.--.|....+.+..+..-.. ++++.+.++
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~y--feesFk~YE 535 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKY--FEESFKAYE 535 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHH--HHHHHHHHH
Confidence 1245777778888888888888888999998887778887777776655443 566655555
No 377
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.58 E-value=1.5 Score=44.58 Aligned_cols=91 Identities=8% Similarity=0.034 Sum_probs=75.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 008730 35 DLYSQAIELNSQNAVYYANRAFAHTKLEE------------YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (556)
Q Consensus 35 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~------------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~ 102 (556)
..|++.++.+|.+..+|..+....-..-. .+..+..|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45788899999999999998865544422 566788999999999999998888888888999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Q 008730 103 KDFQQVKKLSPNDPDAAQKVKEC 125 (556)
Q Consensus 103 ~~~~~al~l~p~~~~~~~~l~~~ 125 (556)
+-+++++..+|++...|..+-..
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHH
Confidence 99999999999988877654443
No 378
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.54 E-value=0.54 Score=48.59 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 73 (556)
.......|..++.+|+|.++.-+-.-..+.+| ++.++..+|.|++..++|++|..++..
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 44455566667777777777777777777777 677777777777777777777777654
No 379
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.47 E-value=0.18 Score=33.64 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIEL 43 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~ 43 (556)
.++.++|..|...|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34455555555555555555555555543
No 380
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.18 E-value=0.99 Score=42.91 Aligned_cols=91 Identities=19% Similarity=0.161 Sum_probs=65.8
Q ss_pred HHccCHHHHHHHHHHHHHhC-----CCC--HHHHHHHHHHHHHhhC-------HHHHHHHHHHHHHhCCC------ChHH
Q 008730 25 FRAKKYSQAIDLYSQAIELN-----SQN--AVYYANRAFAHTKLEE-------YGSAIQDASKAIEIDPR------YPKG 84 (556)
Q Consensus 25 ~~~g~~~~Al~~~~~al~~~-----p~~--~~a~~~lg~~~~~~g~-------~~~A~~~~~~al~l~p~------~~~~ 84 (556)
.....+++|++.|.-|+-.. +.. +..+..+|=+|..+++ +..|++.|++|++.... ....
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 34567889999888887542 222 4456666777777777 45567777777665432 2568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 115 (556)
.+.+|.+..+.|++++|+.+|.+++...-..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 8999999999999999999999999875433
No 381
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.17 E-value=0.2 Score=33.32 Aligned_cols=27 Identities=26% Similarity=0.188 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 008730 50 YYANRAFAHTKLEEYGSAIQDASKAIE 76 (556)
Q Consensus 50 a~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (556)
++.++|.+|...|++++|+..+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344455555555555555555555443
No 382
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.15 E-value=0.62 Score=51.44 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH----------HhCCC----------CHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAI----------ELNSQ----------NAVYYANRAFAHTKLEEYGSAIQDASKA 74 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al----------~~~p~----------~~~a~~~lg~~~~~~g~~~~A~~~~~~a 74 (556)
..|++.|..+...+|.+.|+++|+++- ..+|. +...|..-|..+...|+.+.|+..|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 568888999999999999999999853 22343 4566777788888899999999999887
Q ss_pred HHh---------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730 75 IEI---------------------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 75 l~l---------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 111 (556)
-.- ...+-.+.|.+|..|...|+..+|+..|.+|-..
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 432 3456789999999999999999999999887554
No 383
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=93.07 E-value=0.096 Score=52.42 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=43.8
Q ss_pred cceEeccCCCCHHH--------------HHHHHHhcCCCCCCCCeeeecccccCCCC-h-----HHHHHHHHhccccCCC
Q 008730 294 HFTVCGDVHGQFYD--------------LLNIFELNGLPSEENPYLFNGDFVDRGSF-S-----VEVILTLFAFKCMCPS 353 (556)
Q Consensus 294 ~i~vigDiHG~~~~--------------l~~~l~~~~~~~~~~~~vflGD~vdrG~~-s-----~e~l~~l~~lk~~~p~ 353 (556)
+|+.+.|+||++.. +..+++..........++..||++...+. + ..++..+-++..
T Consensus 2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g~---- 77 (288)
T cd07412 2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAMGV---- 77 (288)
T ss_pred eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhhCC----
Confidence 37889999998553 66666665543344568899999987654 2 245555555542
Q ss_pred eEEEeccccccc
Q 008730 354 AIYLSRGNHESK 365 (556)
Q Consensus 354 ~v~~lrGNHE~~ 365 (556)
.+ +..||||.-
T Consensus 78 Da-~t~GNHefd 88 (288)
T cd07412 78 DA-SAVGNHEFD 88 (288)
T ss_pred ee-eeecccccc
Confidence 33 345999953
No 384
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.97 E-value=3.4 Score=42.98 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHH
Q 008730 14 AEELKALANEAFRAKK-YSQAIDLYSQAIELNSQNAV 49 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~-~~~Al~~~~~al~~~p~~~~ 49 (556)
+..+..-|..+.+.|. -++|+..++.+++..|.+..
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~e 415 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIE 415 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHH
Confidence 4556667777788887 77788888888888777653
No 385
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.95 E-value=2.4 Score=43.07 Aligned_cols=105 Identities=7% Similarity=-0.016 Sum_probs=81.7
Q ss_pred CCCChhHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730 7 ENSSVSRAEELKALANEAFRAKK------------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~------------~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 74 (556)
..++|.++++|..+....-..-. .+..+..|++||+.+|++...+..+-.+..+..+-++..+-++++
T Consensus 12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~ 91 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEEL 91 (321)
T ss_pred HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35678888888888765544322 566788999999999999999998888888888999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHh
Q 008730 75 IEIDPRYPKGYYRRGAAYLA---MGKFKEALKDFQQVKKL 111 (556)
Q Consensus 75 l~l~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~l 111 (556)
+..+|.++..|...-..... .-.+++....|.++++.
T Consensus 92 l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 92 LFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 99999998877655443322 33577888888887775
No 386
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.76 E-value=1.8 Score=46.74 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--C---hHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--Y---PKGYYR 87 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~---~~~~~~ 87 (556)
....|...+...-..|-++.....|++.+++.--.|..-.|.|..+....-+++|.+.|++.+.+.+- - +..|..
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 34567777888888899999999999999999999999999999999999999999999999998652 2 334555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
....-+.--..+.|...|++||+..|.. ...+...+......|- ...|++.++
T Consensus 556 kfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GL--ar~amsiye 610 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGL--ARHAMSIYE 610 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhH--HHHHHHHHH
Confidence 5555555567899999999999988832 1223344444444433 344444444
No 387
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=92.72 E-value=0.16 Score=50.47 Aligned_cols=71 Identities=23% Similarity=0.211 Sum_probs=39.3
Q ss_pred cceEeccCCCC--H--HHHHHHHHhcCCCCCCCCeeeecccc-cCCCChH------HHHHHHHhccccCCCeEEEecccc
Q 008730 294 HFTVCGDVHGQ--F--YDLLNIFELNGLPSEENPYLFNGDFV-DRGSFSV------EVILTLFAFKCMCPSAIYLSRGNH 362 (556)
Q Consensus 294 ~i~vigDiHG~--~--~~l~~~l~~~~~~~~~~~~vflGD~v-drG~~s~------e~l~~l~~lk~~~p~~v~~lrGNH 362 (556)
+++++||.=.. . ..+.+.+.........+-+|++||+| +-|..+. +.+..++... ...--++.+.|||
T Consensus 2 ~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~-~~~~P~~~v~GNH 80 (277)
T cd07378 2 RFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAP-SLQVPWYLVLGNH 80 (277)
T ss_pred eEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccch-hhcCCeEEecCCc
Confidence 47899997653 1 23333333222112335699999997 5554221 2333332211 1234689999999
Q ss_pred ccc
Q 008730 363 ESK 365 (556)
Q Consensus 363 E~~ 365 (556)
|..
T Consensus 81 D~~ 83 (277)
T cd07378 81 DYS 83 (277)
T ss_pred ccC
Confidence 976
No 388
>PLN02533 probable purple acid phosphatase
Probab=92.67 E-value=0.12 Score=54.64 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=38.9
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChH--H-HHHHHHhccccCCCeEEEecccccccc
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV--E-VILTLFAFKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~--e-~l~~l~~lk~~~p~~v~~lrGNHE~~~ 366 (556)
-+++|+||+|-. ......++.+... .-+-+|++||+++-+.... + -..++..+.... -++.+.||||...
T Consensus 140 ~~f~v~GDlG~~-~~~~~tl~~i~~~-~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~--P~m~~~GNHE~~~ 212 (427)
T PLN02533 140 IKFAVSGDLGTS-EWTKSTLEHVSKW-DYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQR--PWMVTHGNHELEK 212 (427)
T ss_pred eEEEEEEeCCCC-cccHHHHHHHHhc-CCCEEEEcCccccccchHHHHHHHHHHhhhHhhcC--ceEEeCccccccc
Confidence 368999999532 2122233333222 3456999999997543321 1 122222222233 3778899999864
No 389
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.49 E-value=1.8 Score=38.13 Aligned_cols=83 Identities=12% Similarity=0.066 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
+.....+-...++.+++...+...--+.|+.++.-..-|.++...|+|.+|+..++...+-.+..+.....++.|+..++
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33344444558899999999998888999999999999999999999999999999999988888999999999999888
Q ss_pred hhh
Q 008730 131 KLK 133 (556)
Q Consensus 131 ~~~ 133 (556)
.-.
T Consensus 93 Dp~ 95 (153)
T TIGR02561 93 DAE 95 (153)
T ss_pred ChH
Confidence 754
No 390
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.25 E-value=5.9 Score=39.29 Aligned_cols=103 Identities=13% Similarity=0.051 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CCC---C-------HHHHHHHHHHHHHhhCHH---HHHHHHH
Q 008730 11 VSRAEELKALANEAFRAK-KYSQAIDLYSQAIEL----NSQ---N-------AVYYANRAFAHTKLEEYG---SAIQDAS 72 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g-~~~~Al~~~~~al~~----~p~---~-------~~a~~~lg~~~~~~g~~~---~A~~~~~ 72 (556)
..-++.+++.|...+..+ ++++|...+++|.++ .+. . ...+..++.+|...+.++ +|....+
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 455788899999999999 999999999999988 221 1 345777888888877654 4555555
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008730 73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (556)
Q Consensus 73 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 113 (556)
.+-.-.|+.+..++..=.++.+.++.+++.+.+.+++.--+
T Consensus 112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 55556677777775555566668999999999999998755
No 391
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.12 E-value=6.5 Score=36.38 Aligned_cols=88 Identities=19% Similarity=0.055 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 008730 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECE 126 (556)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~l~~~~ 126 (556)
-..++..+...+++++|+..++.++..-.+. .-+-.++|.++..+|++++|++.+...-. +.. +......|.++
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDil 169 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHH
Confidence 4567888999999999999999998554332 44678899999999999999998875421 111 22345667777
Q ss_pred HHHhhhhHHHHhcCCC
Q 008730 127 KAVKKLKFEEAIAVPE 142 (556)
Q Consensus 127 ~~~~~~~~~~Ai~~~~ 142 (556)
...|+. ++|...++
T Consensus 170 l~kg~k--~~Ar~ay~ 183 (207)
T COG2976 170 LAKGDK--QEARAAYE 183 (207)
T ss_pred HHcCch--HHHHHHHH
Confidence 777763 44444333
No 392
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=92.11 E-value=0.21 Score=49.04 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=41.0
Q ss_pred cceEeccCCCCH----------HHHHHHHHhcCCCCCCCCeeeecccccCCCCh-----HHHHHHHHhccccCCCeEEEe
Q 008730 294 HFTVCGDVHGQF----------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLS 358 (556)
Q Consensus 294 ~i~vigDiHG~~----------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~p~~v~~l 358 (556)
+|+-++|+||++ ..+..++++..-. ....++..||+++..+.+ ..++..+-.+. -.+ +.
T Consensus 2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~-~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g----~d~-~~ 75 (257)
T cd07408 2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKL-DNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVG----YDA-VT 75 (257)
T ss_pred EEEEeccCcccccCCCCccccHHHHHHHHHHHHhc-CCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC----CcE-Ec
Confidence 478899999985 3455666655433 345688999999876543 23444443332 233 34
Q ss_pred cccccc
Q 008730 359 RGNHES 364 (556)
Q Consensus 359 rGNHE~ 364 (556)
.||||.
T Consensus 76 ~GNHef 81 (257)
T cd07408 76 PGNHEF 81 (257)
T ss_pred cccccc
Confidence 699995
No 393
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.99 E-value=0.66 Score=51.16 Aligned_cols=117 Identities=32% Similarity=0.466 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH--hhCHHHHHHHHHHHHHhCCCChHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTK--LEEYGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~p~~~~~~ 85 (556)
..+......|+..+..++|.+|..-|..++.+-|.+ +....+.+.|++. +++|.+++..+.-|+...|....++
T Consensus 51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L 130 (748)
T KOG4151|consen 51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL 130 (748)
T ss_pred HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence 345667788999999999999999999999998843 4556677777766 5689999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 128 (556)
+.++.+|...+..+-|++.+.-.....|.+..+.....+.+..
T Consensus 131 l~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l 173 (748)
T KOG4151|consen 131 LKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL 173 (748)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence 9999999999999999999888888999997766544444433
No 394
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.85 E-value=2.6 Score=43.58 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=63.4
Q ss_pred HHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------------CC------------CC---hHHHHHHHHH
Q 008730 41 IELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--------------DP------------RY---PKGYYRRGAA 91 (556)
Q Consensus 41 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------------~p------------~~---~~~~~~lg~~ 91 (556)
++.+|-+.+++..++.++.++|+++.|.+.+++|+-. ++ .| ..++++....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4568889999999999999999998888888888622 11 11 3477777888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Q 008730 92 YLAMGKFKEALKDFQQVKKLSPN-DPDAAQKV 122 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~l 122 (556)
+.+.|-+..|.++.+-.+.++|. |+-.....
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ 144 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLF 144 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHH
Confidence 88999999999999999999998 65543333
No 395
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.78 E-value=0.35 Score=50.69 Aligned_cols=82 Identities=22% Similarity=0.187 Sum_probs=71.3
Q ss_pred HHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHH
Q 008730 59 TKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM---GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFE 135 (556)
Q Consensus 59 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 135 (556)
+..+....|+..|.++++..|.....+.++|.++++. |+.-.|+..+..|++++|....+++.+++++..+++ +.
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r--~~ 462 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR--YL 462 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh--HH
Confidence 3345577899999999999999999999999998875 577789999999999999999999999999999988 67
Q ss_pred HHhcCCC
Q 008730 136 EAIAVPE 142 (556)
Q Consensus 136 ~Ai~~~~ 142 (556)
+|++...
T Consensus 463 eal~~~~ 469 (758)
T KOG1310|consen 463 EALSCHW 469 (758)
T ss_pred HhhhhHH
Confidence 7777654
No 396
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=1.9 Score=46.19 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=84.4
Q ss_pred HHccCHHH-HHHHHHHHHHhCCCCHHHHHH--HHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 008730 25 FRAKKYSQ-AIDLYSQAIELNSQNAVYYAN--RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101 (556)
Q Consensus 25 ~~~g~~~~-Al~~~~~al~~~p~~~~a~~~--lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A 101 (556)
+..+.... |+..+...+.++|.++..+.. +...+...+....|....+.++..+|.+..+..++|.++...|..-.+
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA 120 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence 33444444 777788888888998877444 477777889999999999999999999999999999999988887776
Q ss_pred HHHHHH-HHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 102 LKDFQQ-VKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 102 ~~~~~~-al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
...+.. +....|++......+-.++. +++
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~ 150 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRFYQ-LGR 150 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHHHH-HHH
Confidence 666665 99999999998888855555 443
No 397
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.74 E-value=5.1 Score=42.04 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-N--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------- 81 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------- 81 (556)
..++..+-+|.....-+.|+.|...|..|+++-.. + +.+-.++|..|.+.++ +...|+..-.+.|.+
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~---~ed~y~~ld~i~p~nt~s~ssq 441 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD---AEDLYKALDLIGPLNTNSLSSQ 441 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc---HHHHHHHHHhcCCCCCCcchHH
Confidence 35778888999999999999999999999987543 3 3445578999998776 334444444456653
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (556)
Q Consensus 82 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 112 (556)
..+++..|...+.++++.||...+.+.++..
T Consensus 442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 4578888888899999999999999999987
No 398
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.68 E-value=0.69 Score=37.62 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (556)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 112 (556)
++.++|.++...|++++|+..+++|+++.
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555553
No 399
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.68 E-value=1.8 Score=39.90 Aligned_cols=98 Identities=20% Similarity=0.112 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--CChH--
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--RYPK-- 83 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~-- 83 (556)
.+.-.++..+|..|.+.|++++|++.|.++.+..-.. .+.+.++-.+.+..+++........++-.+-. .++.
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 4445788999999999999999999999988865432 45677788888889999999999999876532 2322
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHH
Q 008730 84 --GYYRRGAAYLAMGKFKEALKDFQQV 108 (556)
Q Consensus 84 --~~~~lg~~~~~~g~~~~A~~~~~~a 108 (556)
.....|..+...++|.+|...|-.+
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 2334455666677777777777544
No 400
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.45 E-value=0.96 Score=36.77 Aligned_cols=55 Identities=29% Similarity=0.417 Sum_probs=45.1
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730 23 EAFRAKKYSQAIDLYSQAIELNSQN---------AVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (556)
Q Consensus 23 ~~~~~g~~~~Al~~~~~al~~~p~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 77 (556)
...+.|+|.+|++.+.+..+..... ..+..++|.++...|++++|+..+++|+++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4568899999999988888764322 456788999999999999999999999754
No 401
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.44 E-value=2.7 Score=42.95 Aligned_cols=102 Identities=13% Similarity=0.118 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------------------------CHHHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----------------------------------NAVYYANRAFAH 58 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~----------------------------------~~~a~~~lg~~~ 58 (556)
.+...+..+..+...|+..+|+..++..++.... .+.++..+|.-.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 4667788899999999999999999988882100 134455666665
Q ss_pred HHh------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 008730 59 TKL------EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF-----------------KEALKDFQQVKKLSPN 114 (556)
Q Consensus 59 ~~~------g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~-----------------~~A~~~~~~al~l~p~ 114 (556)
... +..++++..|+++++.+|....+|+.+|..+...-+. ..|+..|-+++...++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 566 7788999999999999999999999999988654221 2477788888887776
No 402
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.16 E-value=3 Score=42.52 Aligned_cols=97 Identities=18% Similarity=0.139 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
+-.....++...-.|+|++|...|+.-+. +|+.- -.+..|=..-.+.|.++.|..+.+.+-..-|.-+.++.-.-...
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 34455667777778888888888776544 44321 11222222334567888888888888888888877777777777
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 008730 93 LAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 93 ~~~g~~~~A~~~~~~al~l 111 (556)
...|+++.|++..+.....
T Consensus 199 ~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HhcCChHHHHHHHHHHHHH
Confidence 8888888888887766553
No 403
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=91.08 E-value=0.31 Score=48.11 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=37.2
Q ss_pred ceEeccCCCCHHH----------------------HHHHHHhcCCC-CCCCCeeeecccccCCCCh-----HHHHHHHHh
Q 008730 295 FTVCGDVHGQFYD----------------------LLNIFELNGLP-SEENPYLFNGDFVDRGSFS-----VEVILTLFA 346 (556)
Q Consensus 295 i~vigDiHG~~~~----------------------l~~~l~~~~~~-~~~~~~vflGD~vdrG~~s-----~e~l~~l~~ 346 (556)
|+.++|+||++.. +..++++.... ..+..++..||+++..+.+ ..++..+-.
T Consensus 3 il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l~~ 82 (264)
T cd07411 3 LLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEALYTRGQAMVDALNA 82 (264)
T ss_pred EEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHHhhcCChhHHHHHHh
Confidence 6778899987533 34455554322 2222245699999877543 244444444
Q ss_pred ccccCCCeEEEeccccccc
Q 008730 347 FKCMCPSAIYLSRGNHESK 365 (556)
Q Consensus 347 lk~~~p~~v~~lrGNHE~~ 365 (556)
+. -. .+. ||||..
T Consensus 83 ~g----~d-a~~-GNHefd 95 (264)
T cd07411 83 LG----VD-AMV-GHWEFT 95 (264)
T ss_pred hC----Ce-EEe-cccccc
Confidence 32 23 333 999953
No 404
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.00 E-value=2.2 Score=35.63 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=58.0
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 008730 54 RAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYRRGAAYLAMGK-----------FKEALKDFQQVKKLSPNDPDAA 119 (556)
Q Consensus 54 lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~l~p~~~~~~ 119 (556)
+|..+++.|++-+|++..+..+...+++. -.+..-|.+..++.. .-.|++++.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46778899999999999999999988765 566667887766542 3469999999999999987777
Q ss_pred HHHHHH
Q 008730 120 QKVKEC 125 (556)
Q Consensus 120 ~~l~~~ 125 (556)
+.++.-
T Consensus 82 ~~la~~ 87 (111)
T PF04781_consen 82 FELASQ 87 (111)
T ss_pred HHHHHH
Confidence 777654
No 405
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.91 E-value=2.3 Score=47.27 Aligned_cols=90 Identities=19% Similarity=0.139 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHH----------HhCC----------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008730 49 VYYANRAFAHTKLEEYGSAIQDASKAI----------EIDP----------RYPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (556)
Q Consensus 49 ~a~~~lg~~~~~~g~~~~A~~~~~~al----------~l~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 108 (556)
..|++.|.-+...++.+.|+++|+++- .-+| .++..|-..|.-+...|+.+.|+.+|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 347788888888899999999999862 2244 34567778899999999999999999987
Q ss_pred HHh---------------------CCCCHHHHHHHHHHHHHHhhhhHHHHhcC
Q 008730 109 KKL---------------------SPNDPDAAQKVKECEKAVKKLKFEEAIAV 140 (556)
Q Consensus 109 l~l---------------------~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~ 140 (556)
-.. ...+..+-+.+++.|...|+ +.+|+..
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~--v~~Av~F 989 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD--VVKAVKF 989 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH--HHHHHHH
Confidence 653 23455677788888877776 3444443
No 406
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=90.80 E-value=5.9 Score=38.75 Aligned_cols=51 Identities=16% Similarity=0.360 Sum_probs=36.3
Q ss_pred CEEEeeccccccCceEec--CCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEE
Q 008730 479 DLVVRSHEVKDEGYEIEH--DGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTF 534 (556)
Q Consensus 479 ~~iir~H~~~~~G~~~~~--~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~ 534 (556)
.+++-|||.. -|.+... +++-+.+.|.|.|. -.|.++.|.=++++++.+.|
T Consensus 205 hVyf~Gnq~~-f~t~~~~~~~~~~v~lv~vP~Fs----~t~~~vlvdl~tLe~~~v~f 257 (257)
T cd07387 205 HVYFAGNQPK-FGTKLVEGEEGQRVLLVCVPSFS----KTGTAVLVNLRTLECEPISF 257 (257)
T ss_pred CEEEeCCCcc-eeeeEEEcCCCCeEEEEEeCCcC----cCCEEEEEECCcCcEEEEeC
Confidence 6788999984 5555443 36778888889874 35666667558888887765
No 407
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=90.71 E-value=0.01 Score=59.59 Aligned_cols=216 Identities=12% Similarity=-0.088 Sum_probs=125.1
Q ss_pred cCCCCCcceEeccCCCCHHHHHHHHHhcCCC-CCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccc
Q 008730 288 DIPDGKHFTVCGDVHGQFYDLLNIFELNGLP-SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 288 ~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~-~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 366 (556)
..|+-.-++|+-+-||. |.. +.....|+++++++++.+.++.+.+-+..+..+-.+--..++||+..
T Consensus 25 ~gpre~l~~~~~~~~~~-----------g~~~~d~latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~~- 92 (476)
T KOG0918|consen 25 SGPREKLIYVVAVYTGT-----------GYEKPDYLATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGDS- 92 (476)
T ss_pred hCccceeEEEeccccCC-----------CCcCCcceeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccCc-
Confidence 34433345666666652 322 44556899999999999999999999988888888888889999433
Q ss_pred cccccCchhhHHhhh----hHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhh
Q 008730 367 MNKIYGFEGEVRSKL----SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCEL 442 (556)
Q Consensus 367 ~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~l 442 (556)
++++.++.-.- ..-++...++-+...+..++.+ ++++.||+. .|.......+..+.-..--..++ ..+
T Consensus 93 ----~~~R~~LVlp~l~S~riyvid~~~ep~~~~l~k~i~~-~il~~~~l~-~Pht~hcla~g~v~vs~lGd~~g-n~k- 164 (476)
T KOG0918|consen 93 ----SFKRRYLVLPSLNSGRIYVIDVKTEPRKPSLEKTIDP-DILEKTGLA-CPHTSHCLASGNVMVSCLGDAEG-NAK- 164 (476)
T ss_pred ----chhhhheeecccccCceEEEEeccCcCccceeeeech-hhHhhcCCc-CCcccccccCCCeeEEeeccccc-CCc-
Confidence 23332211111 1124455567777778877756 999999998 77655444433322110000000 001
Q ss_pred hcCCCCCCC-----CCCcCCCCCccccCHHH--HHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCC
Q 008730 443 LWSDPQPLP-----GRGPSKRGVGLSFGADV--TKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGN 515 (556)
Q Consensus 443 lw~dp~~~~-----~~~~~~rg~g~~fg~~~--~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n 515 (556)
.|-++.+.. .|. .+|....||.+- .-++....+.+...+.|.....+.....|+ ++.++.+-|.-..+|
T Consensus 165 g~f~llD~~~~~k~tw~--~~~~~p~~gyDfwyqpr~~~mIstewgap~~~~~gf~~~~v~d~--lyg~~lhvy~w~~~~ 240 (476)
T KOG0918|consen 165 GGFLLLDSDFNEKGTWE--KPGHSPLFGYDFWYQPRHNVMISTEWGAPNALRKGFNPADVEDG--LYGSHLHVYQWSPGE 240 (476)
T ss_pred CCeEEecCccceecccc--cCCCccccccceeeccccceEEeecccCchhhhcCCChhHhhcc--ceeeeeEEEecCCcc
Confidence 122222221 111 111222333221 223344455666778887754455455565 889999999887889
Q ss_pred eEEEEEEecCCC
Q 008730 516 KGAFIRFEAPTL 527 (556)
Q Consensus 516 ~~a~~~~~~~~~ 527 (556)
.++.+.++...+
T Consensus 241 ~~QtidL~~~gl 252 (476)
T KOG0918|consen 241 LKQTIDLGDTGL 252 (476)
T ss_pred ceeEEecCCCCc
Confidence 999999944333
No 408
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.64 E-value=0.87 Score=44.95 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730 67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (556)
Q Consensus 67 A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 128 (556)
|+.+|.+|+.+.|++..+|+++|.++...|+.=+|+-+|-|++...-..+.+..++......
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67888889999999888999999988888888888888888887765567778888877665
No 409
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.52 E-value=0.45 Score=46.78 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=71.9
Q ss_pred CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN-RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~-lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 85 (556)
.+.-+..+..|...+....+.|-|.+--..|.+++..+|.+++.|.. -+.-+...++++.|...+.++++++|++|..|
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 34556778889999999999999999999999999999999999987 45567788999999999999999999999887
Q ss_pred HHH
Q 008730 86 YRR 88 (556)
Q Consensus 86 ~~l 88 (556)
+..
T Consensus 180 ~ey 182 (435)
T COG5191 180 IEY 182 (435)
T ss_pred HHH
Confidence 653
No 410
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.38 E-value=1.5 Score=43.28 Aligned_cols=80 Identities=24% Similarity=0.263 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008730 30 YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (556)
Q Consensus 30 ~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 109 (556)
|..-+...+++++.. ...++..++..+...|+++.++..+++.+..+|.+-..|..+-.+|...|+...|+..|++.-
T Consensus 137 f~~WV~~~R~~l~e~--~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEEL--FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 777777777766643 467889999999999999999999999999999999999999999999999999999999887
Q ss_pred Hh
Q 008730 110 KL 111 (556)
Q Consensus 110 ~l 111 (556)
+.
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 74
No 411
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.28 E-value=1.9 Score=46.44 Aligned_cols=81 Identities=17% Similarity=0.110 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008730 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (556)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 124 (556)
+.+-|.-+++.++|..+++.|...+..-|.+ .+....++.||..+.+.+.|.+.++.|-+.+|.++-.......
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 4455777889999999999999999876643 6678889999999999999999999999999998877666555
Q ss_pred HHHHHhh
Q 008730 125 CEKAVKK 131 (556)
Q Consensus 125 ~~~~~~~ 131 (556)
+....+.
T Consensus 437 ~~~~E~~ 443 (872)
T KOG4814|consen 437 SFLAEDK 443 (872)
T ss_pred HHHHhcc
Confidence 5444333
No 412
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.19 E-value=3.2 Score=39.43 Aligned_cols=80 Identities=16% Similarity=0.029 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHHHHccCHHH-------HHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730 11 VSRAEELKALANEAFRAKKYSQ-------AIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~-------Al~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 77 (556)
...+..+..+|-.|...|+.++ |++.|.+|++.... ...+.+.+|....+.|++++|+.+|.+++..
T Consensus 115 s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 115 SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3557778888888888888544 55666666654422 2567888999999999999999999999976
Q ss_pred CCCCh-HHHHHHHH
Q 008730 78 DPRYP-KGYYRRGA 90 (556)
Q Consensus 78 ~p~~~-~~~~~lg~ 90 (556)
.-.+. ..+..+|.
T Consensus 195 ~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 195 KKASKEPKLKDMAR 208 (214)
T ss_pred CCCCCcHHHHHHHH
Confidence 43332 34454444
No 413
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.17 E-value=1 Score=29.43 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=6.2
Q ss_pred HHHHHHHhhCHHHHHHH
Q 008730 54 RAFAHTKLEEYGSAIQD 70 (556)
Q Consensus 54 lg~~~~~~g~~~~A~~~ 70 (556)
+|..+..+|++++|+..
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33333333333333333
No 414
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.08 E-value=4.1 Score=44.77 Aligned_cols=107 Identities=18% Similarity=0.152 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcc-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 16 ELKALANEAFRAK-----KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 16 ~~~~lg~~~~~~g-----~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
+.+.+|.+|.+.. +++.|+.+|.++-++.. +.+.+.+|.++..-. ++..|..+|..|.+. .+..+.++
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence 4556777777743 78899999999988764 566778898887655 578999999999866 46889999
Q ss_pred HHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008730 88 RGAAYLAM----GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (556)
Q Consensus 88 lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 128 (556)
+|.||..- -+...|..++.++.+.. ++.+...++..+..
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~ 408 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEY 408 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHH
Confidence 99999753 47899999999999987 56666666655543
No 415
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.97 E-value=3.6 Score=42.32 Aligned_cols=104 Identities=14% Similarity=0.111 Sum_probs=86.6
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC----CHHH
Q 008730 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG----KFKE 100 (556)
Q Consensus 27 ~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g----~~~~ 100 (556)
+.-.++-+.+...+++.+|+...+|+.+.-++.+.+ ++..-++.++++++.||.|..+|..+-.+..... ...+
T Consensus 88 ~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~ 167 (421)
T KOG0529|consen 88 QALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKE 167 (421)
T ss_pred HHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchh
Confidence 346777788999999999999999999999998766 4788999999999999999998877766555433 2577
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 101 ALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 101 A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
-+++..+++.-++.|-.+|.+...+...+-
T Consensus 168 El~ftt~~I~~nfSNYsaWhyRs~lL~~l~ 197 (421)
T KOG0529|consen 168 ELEFTTKLINDNFSNYSAWHYRSLLLSTLH 197 (421)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHHHhc
Confidence 889999999999999999998887766443
No 416
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.90 E-value=11 Score=40.63 Aligned_cols=125 Identities=11% Similarity=0.065 Sum_probs=107.0
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CCCChHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-DPRYPKGYY 86 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~ 86 (556)
.-++.....|......-...|+++.....|++++--.....+.|...+.-....|+.+-|-..+.++.+. .|+.+..+.
T Consensus 291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L 370 (577)
T KOG1258|consen 291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL 370 (577)
T ss_pred cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence 3445566778888888899999999999999999999999999999999999999999999999888886 466777888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
.-+..-...|++..|...|++...--|+...+-........+.++.
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcch
Confidence 8888889999999999999999998898887776666666666663
No 417
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.52 E-value=3.9 Score=42.76 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=82.4
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 008730 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101 (556)
Q Consensus 22 ~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A 101 (556)
......||.-.|-.....+++..|.++..-...+.++.++|.|+.|.+.+.-+-..-..-..+...+-..++.+|++++|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34567899999999999999999999999999999999999999999998777665555556777777888999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHH
Q 008730 102 LKDFQQVKKLSPNDPDAAQK 121 (556)
Q Consensus 102 ~~~~~~al~l~p~~~~~~~~ 121 (556)
...-+-.+.-.-+++++...
T Consensus 377 ~s~a~~~l~~eie~~ei~~i 396 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTV 396 (831)
T ss_pred HHHHHHHhccccCChhheee
Confidence 98888777766666665433
No 418
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.30 E-value=1.3 Score=28.96 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 008730 83 KGYYRRGAAYLAMGKFKEALKD--FQQVKKLSPND 115 (556)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~--~~~al~l~p~~ 115 (556)
+.++.+|..+...|++++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5788899999999999999999 55888888764
No 419
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.27 E-value=0.55 Score=28.07 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 008730 83 KGYYRRGAAYLAMGKFKEALKDFQ 106 (556)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~ 106 (556)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355666666666666666666554
No 420
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=88.95 E-value=4 Score=34.56 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCCHH----HHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-------NSQNAV----YYANRAFAHTKLEEYGSAIQDASKAIEI 77 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-------~p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l 77 (556)
+-.+-.++.++...|+|++++....++|.. +.+... +-+++|.++..+|+.++|+..|+.+.+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 344556888899999999988887777754 455444 4467899999999999999999998764
No 421
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.79 E-value=7.5 Score=38.37 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (556)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~ 143 (556)
...++..++..+...++++.++..+++.+..+|.+...+..+..++...|+ ...|+..+.+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~--~~~ai~~y~~ 212 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR--QSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC--chHHHHHHHH
Confidence 356778888888888889999999999999999888888888888887777 4555555543
No 422
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.56 E-value=0.78 Score=30.39 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHH
Q 008730 51 YANRAFAHTKLEEYGSAIQDASKAIE 76 (556)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (556)
+..+|.+-...++|++|+..|++++.
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 423
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=88.40 E-value=1.3 Score=51.65 Aligned_cols=130 Identities=22% Similarity=0.250 Sum_probs=99.8
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIE--------LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---- 77 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~--------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---- 77 (556)
.-..+.-....|......+.+.+|.+ ..+++. +.|.....+..++..+.+++++++|+...++|.-+
T Consensus 928 ~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~ 1006 (1236)
T KOG1839|consen 928 TVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV 1006 (1236)
T ss_pred ccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechh
Confidence 33567777888989999999998888 444443 46888999999999999999999999999998754
Q ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 78 ----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 78 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.|+....+.+++...+..++...|...+.+++.+. |.-.....++..++..+++ ++.|+.+.+
T Consensus 1007 ~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e--~d~al~~le 1081 (1236)
T KOG1839|consen 1007 LGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE--ADTALRYLE 1081 (1236)
T ss_pred ccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH--HHHHHHHHH
Confidence 34557789999999999999999999999999872 4434445566666544444 566666555
No 424
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.24 E-value=9.2 Score=40.22 Aligned_cols=128 Identities=16% Similarity=0.062 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH-HHhhCHHHHHHHHHHHHHhC---CCC-
Q 008730 12 SRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQN---AVYYANRAFAH-TKLEEYGSAIQDASKAIEID---PRY- 81 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g--~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~---p~~- 81 (556)
.-+.++..+|..+...| +...++++++..+...|.+ +..+..+|..+ ...++++.|...+++|..+. |..
T Consensus 5 Ava~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy 84 (629)
T KOG2300|consen 5 AVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY 84 (629)
T ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH
Confidence 34677888899999999 8999999999999988775 45566777654 45789999999999998764 332
Q ss_pred ---hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHHhhhhHHHHhcCC
Q 008730 82 ---PKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDAAQ----KVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 82 ---~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~----~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
..++-.++.+|.... .+..|...+++|+++....+.... .++.+..-. .++.-|+++.
T Consensus 85 dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~id--kD~~sA~elL 150 (629)
T KOG2300|consen 85 DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIID--KDFPSALELL 150 (629)
T ss_pred hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhh--ccchhHHHHH
Confidence 456778888888887 788999999999999888775433 333333222 2355565553
No 425
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.09 E-value=3 Score=43.91 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
+...|........+.+.+.+--..|.+++..+|++++.|..-|.=.+.-+. .+.|.+.+.++++.+|+++..|...
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 466677777666777779999999999999999999999999987777665 9999999999999999998876543
No 426
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.07 E-value=1.5 Score=43.26 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730 33 AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (556)
Q Consensus 33 Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 94 (556)
|..+|.+|+.+.|++...|+++|.++...|+.-+|+-+|-+++...--.+.+.-++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999997665568888888888777
No 427
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.04 E-value=1 Score=29.84 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (556)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 112 (556)
+++..+|.+-...++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999874
No 428
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=87.94 E-value=3.2 Score=48.52 Aligned_cols=123 Identities=14% Similarity=0.172 Sum_probs=98.0
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--- 77 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--- 77 (556)
-+|..+..+..++..+...|++++|+..-.++.-+. |+....+.+++...+..++...|+..+.++..+
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 356778889999999999999999999988877553 556778899998888889999999999999875
Q ss_pred -----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHhh
Q 008730 78 -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--------NDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 78 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------~~~~~~~~l~~~~~~~~~ 131 (556)
.|.-...-.+++.++..+++++.|+.+++.|++..- .....+..++++....+.
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~d 1114 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKD 1114 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHH
Confidence 455555668889999999999999999999999642 123445556666655555
No 429
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=87.87 E-value=0.9 Score=45.24 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=38.3
Q ss_pred cceEeccCCCCH---------------------HHHHHHHHhcCCCCCCCCeeeecccccCCCC-----hHHHHHHHHhc
Q 008730 294 HFTVCGDVHGQF---------------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSF-----SVEVILTLFAF 347 (556)
Q Consensus 294 ~i~vigDiHG~~---------------------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~-----s~e~l~~l~~l 347 (556)
+|+-++|+||++ ..+..+++.......+..++..||+++..+. ...++..+-.+
T Consensus 2 ~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~~ 81 (281)
T cd07409 2 TILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNLL 81 (281)
T ss_pred EEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHhc
Confidence 377889999875 3444555554332233345568999987653 23344444343
Q ss_pred cccCCCeEEEecccccc
Q 008730 348 KCMCPSAIYLSRGNHES 364 (556)
Q Consensus 348 k~~~p~~v~~lrGNHE~ 364 (556)
. . .+.. .||||.
T Consensus 82 g---~-D~~~-lGNHef 93 (281)
T cd07409 82 G---Y-DAMT-LGNHEF 93 (281)
T ss_pred C---C-CEEE-eccccc
Confidence 3 2 3333 599996
No 430
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.54 E-value=13 Score=38.20 Aligned_cols=109 Identities=16% Similarity=0.009 Sum_probs=67.8
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---CCCC---hHHHHHHHHHHHH-c
Q 008730 23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---DPRY---PKGYYRRGAAYLA-M 95 (556)
Q Consensus 23 ~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~---~~~~~~lg~~~~~-~ 95 (556)
.....|+.+.|..+..++-+..|.-+.++...-......|+++.|++..+...+. .++- ..+-..-+.+... .
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 3456788888888888888888888877777777777788888887777655432 2221 1122222222222 2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 96 g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
.+...|...-.+++++.|+...+-..-+..+...++
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~ 278 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGN 278 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc
Confidence 345667777777777777766666666666555554
No 431
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.51 E-value=11 Score=37.25 Aligned_cols=104 Identities=20% Similarity=0.170 Sum_probs=75.3
Q ss_pred HHHccCHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHhh-CHHHHHHHHHHHHHh----CC---C-------
Q 008730 24 AFRAKKYSQAIDLYSQAIELN-SQN-------AVYYANRAFAHTKLE-EYGSAIQDASKAIEI----DP---R------- 80 (556)
Q Consensus 24 ~~~~g~~~~Al~~~~~al~~~-p~~-------~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l----~p---~------- 80 (556)
..++|+++.|..++.|+-.+. ..+ +..+++.|......+ ++++|..++++|.++ .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999988765 222 356788888888899 999999999999887 22 1
Q ss_pred ChHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730 81 YPKGYYRRGAAYLAMGKFK---EALKDFQQVKKLSPNDPDAAQKVKECEK 127 (556)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~---~A~~~~~~al~l~p~~~~~~~~l~~~~~ 127 (556)
...++..++.+|...+.++ +|...++.+-.-.|+.+..+...-++..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~ 132 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILL 132 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHh
Confidence 1457888899998888765 4555555565566777776644444433
No 432
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=87.43 E-value=0.95 Score=44.46 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=50.3
Q ss_pred CcceEeccCCCC--HHHHHHHHHhcCCCCCCCCeeeecccccCC-CChHHHHHHHHhccccCCCeEEEecccccccc
Q 008730 293 KHFTVCGDVHGQ--FYDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 293 ~~i~vigDiHG~--~~~l~~~l~~~~~~~~~~~~vflGD~vdrG-~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 366 (556)
++|.+||||=|. ...+...|..+......+-+|..||....| .-+-++...|..+-+ .++-+ |||+.-.
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~Gv----DviT~-GNH~~Dk 72 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGV----NYITM-GNHTWFQ 72 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCC----CEEEc-cchhccC
Confidence 468999999999 566667777665444456677789999766 457888888887753 45554 9998653
No 433
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.40 E-value=8.4 Score=38.26 Aligned_cols=108 Identities=21% Similarity=0.173 Sum_probs=60.5
Q ss_pred HHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCC-hHHHH
Q 008730 16 ELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRY-PKGYY 86 (556)
Q Consensus 16 ~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~-~~~~~ 86 (556)
....++..+.. ..+..+|+..|+ ...+..++.+.+++|..|.. ..++.+|..+|++|.+..-.. ..+.+
T Consensus 75 a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~ 152 (292)
T COG0790 75 ALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMY 152 (292)
T ss_pred HHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 34444444432 335666666666 33344556666667766665 336777777777776664322 23366
Q ss_pred HHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730 87 RRGAAYLAMG-------KFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (556)
Q Consensus 87 ~lg~~~~~~g-------~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~ 127 (556)
.+|.+|..-. +...|...|.++-... ++.+...++.++.
T Consensus 153 ~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~ 198 (292)
T COG0790 153 RLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYE 198 (292)
T ss_pred HHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 6666665531 2225666666666654 5566666665543
No 434
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.40 E-value=7.6 Score=40.12 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHHhhCHHHHHHHHHHHHHhCC-----CChH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-NAVYYAN-RAFAHTKLEEYGSAIQDASKAIEIDP-----RYPK 83 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-~~~a~~~-lg~~~~~~g~~~~A~~~~~~al~l~p-----~~~~ 83 (556)
..--.+++.....+.++|-+..|++..+-.+.+||. |+-.-.. +-....+.++|+--++.++....... .-|.
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn 179 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN 179 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc
Confidence 334566778888999999999999999999999999 7655443 34445677888888887777655211 1345
Q ss_pred HHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q 008730 84 GYYRRGAAYLAMGKF---------------KEALKDFQQVKKLSPN 114 (556)
Q Consensus 84 ~~~~lg~~~~~~g~~---------------~~A~~~~~~al~l~p~ 114 (556)
..+..+.+++.+++. ++|...+++|+...|.
T Consensus 180 ~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 180 FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 778889999999998 8999999999998874
No 435
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=86.67 E-value=0.46 Score=48.87 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=35.3
Q ss_pred CCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccc
Q 008730 321 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 368 (556)
Q Consensus 321 ~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~ 368 (556)
.|++-.+||+-||||++-.+++.|... ..|-+-.||||-..+.
T Consensus 191 VDhLHiVGDIyDRGP~pd~Imd~L~~y-----hsvDiQWGNHDilWmg 233 (648)
T COG3855 191 VDHLHIVGDIYDRGPYPDKIMDTLINY-----HSVDIQWGNHDILWMG 233 (648)
T ss_pred hhheeeecccccCCCCchHHHHHHhhc-----ccccccccCcceEEee
Confidence 457999999999999999999998776 3666778999965543
No 436
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=85.85 E-value=0.87 Score=54.69 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=41.0
Q ss_pred CcceEeccCCCCH---HHHHHHHHhcCCCCCCCCeeeecccccCCCCh-----HHHHHHHHhccccCCCeEEEecccccc
Q 008730 293 KHFTVCGDVHGQF---YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHES 364 (556)
Q Consensus 293 ~~i~vigDiHG~~---~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~p~~v~~lrGNHE~ 364 (556)
-+|+.++|+||++ ..+..++++..-...+..++..||++++.+.+ ..++..+-.+. --++..||||.
T Consensus 661 l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg-----~d~~~~GNHEf 735 (1163)
T PRK09419 661 LTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEMG-----YDASTFGNHEF 735 (1163)
T ss_pred EEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCcC-----CCEEEeccccc
Confidence 4689999999985 44444555443222222233379999987654 34555555543 22446899996
No 437
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=85.81 E-value=4.4 Score=42.59 Aligned_cols=220 Identities=20% Similarity=0.187 Sum_probs=107.3
Q ss_pred CcceEeccCC-CCHHHHHHHHH----hcCCC----CCCCCeeeecccccC-CC-----------ChHHHHHHHHhccccC
Q 008730 293 KHFTVCGDVH-GQFYDLLNIFE----LNGLP----SEENPYLFNGDFVDR-GS-----------FSVEVILTLFAFKCMC 351 (556)
Q Consensus 293 ~~i~vigDiH-G~~~~l~~~l~----~~~~~----~~~~~~vflGD~vdr-G~-----------~s~e~l~~l~~lk~~~ 351 (556)
..+..++|+| |...-+...|. .++-+ +...-++.-||.||. |- +..|-.+.+-.+-..-
T Consensus 226 v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~v 305 (481)
T COG1311 226 VYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQV 305 (481)
T ss_pred eEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhC
Confidence 3578999999 55444444333 22222 122346777899994 21 1222233333333223
Q ss_pred C--CeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhccccccccc-CCeEEEEecccccCCCCChhhhhhcc
Q 008730 352 P--SAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL-NQKVFVVHGGLFSVDGVKLSDIKTID 428 (556)
Q Consensus 352 p--~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i-~~~~~~vHgGi~~~~~~~~~~i~~~~ 428 (556)
| =.|++.+||||..-....--+..+.. ..++...+-.|-.=|....+ |.+++..|| .+++|+...-
T Consensus 306 p~~I~v~i~PGnhDa~r~a~PQp~~~~~~----kslf~~~n~~~v~NP~~~~l~G~~vL~~hG-------~sidDii~~v 374 (481)
T COG1311 306 PEHIKVFIMPGNHDAVRQALPQPHFPELI----KSLFSLNNLLFVSNPALVSLHGVDVLIYHG-------RSIDDIIKLV 374 (481)
T ss_pred CCCceEEEecCCCCccccccCCCCcchhh----cccccccceEecCCCcEEEECCEEEEEecC-------CCHHHHHhhC
Confidence 3 36788999999765543322221111 11222222222233433333 446888886 2566665432
Q ss_pred cCCCC--CCccchhhhhcCCCCCCCCC-CcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEecCCeEEEEec
Q 008730 429 RFCEP--PEEGLMCELLWSDPQPLPGR-GPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFS 505 (556)
Q Consensus 429 r~~~~--~~~~~~~~llw~dp~~~~~~-~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfS 505 (556)
...+. +.....+-|.|.-=.+..|. .+. ..|.+|. |.=.-=-++++.||+.. .|+....+.++|..+|
T Consensus 375 P~~~~~~~~~ame~lLk~rHlaPtygg~~p~-----aP~~kD~---lVIeevPDv~~~Ghvh~-~g~~~y~gv~~vns~T 445 (481)
T COG1311 375 PGADYDSPLKAMEELLKRRHLAPTYGGTLPI-----APETKDY---LVIEEVPDVFHTGHVHK-FGTGVYEGVNLVNSGT 445 (481)
T ss_pred CCCCccchHHHHHHHHHhcccCCCCCCcccc-----ccCCcCc---eeeccCCcEEEEccccc-cceeEEeccceEEeee
Confidence 22111 11112223445442211110 000 0011110 00001136789999994 8999988989999999
Q ss_pred CCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 008730 506 APNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 536 (556)
Q Consensus 506 a~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 536 (556)
-+.+. -.+-++.|.-...+..+..|..
T Consensus 446 ~q~qT----efqk~vni~p~~~~v~vv~~~~ 472 (481)
T COG1311 446 WQEQT----EFQKMVNINPTPGNVPVVDFDS 472 (481)
T ss_pred ecchh----ccceEEEecCcccceeEEeccc
Confidence 88653 3455677733345555555554
No 438
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=85.52 E-value=1.2 Score=43.75 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHhcCCCCCCCCeeeecccccCCCC-----hHHHHHHHHhccccCCCeEEEecccccc
Q 008730 303 GQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSF-----SVEVILTLFAFKCMCPSAIYLSRGNHES 364 (556)
Q Consensus 303 G~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~-----s~e~l~~l~~lk~~~p~~v~~lrGNHE~ 364 (556)
|-+..+..++++..-...+..++..||+++.++. ...++..+-.+.. -+...||||.
T Consensus 21 gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~~-----d~~~~GNHef 82 (257)
T cd07406 21 GGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALGV-----DLACFGNHEF 82 (257)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcCC-----cEEeeccccc
Confidence 4467777777776544334468999999987753 2455666555531 2446799995
No 439
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.46 E-value=1.7 Score=44.97 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=53.2
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCC-CCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccc
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSE-ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNH 362 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~-~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNH 362 (556)
.+|.||||.-|+++.|.+-++......+ =+.++++|++.+--..+-|++.+.-.- ...|--++++-+|-
T Consensus 6 ~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~-~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 6 AKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGT-KKVPIPTYFLGDNA 75 (528)
T ss_pred ceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCC-ccCceeEEEecCCC
Confidence 4699999999999999887776544332 456999999999877888888876554 45677778877765
No 440
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.41 E-value=17 Score=37.55 Aligned_cols=109 Identities=14% Similarity=0.172 Sum_probs=84.6
Q ss_pred HHHHccCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHhh------------CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 23 EAFRAKKYSQ-AIDLYSQAIELNSQNAVYYANRAFAHTKLE------------EYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 23 ~~~~~g~~~~-Al~~~~~al~~~p~~~~a~~~lg~~~~~~g------------~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.....|.|++ +++.=.+.+..+|+...+|+.+=.++.... -.++-+.....+++.+|+...+|+.+.
T Consensus 37 ~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~ 116 (421)
T KOG0529|consen 37 KKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK 116 (421)
T ss_pred HHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3345566654 677777888889998888887655443322 356678888999999999999999999
Q ss_pred HHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 90 AAYLAMGK--FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 90 ~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
.++.+.+. +..-++.++++++.+|.|-.+|...-.+......
T Consensus 117 w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 117 WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 99997764 6889999999999999999988877776655443
No 441
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.21 E-value=20 Score=32.64 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=27.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 008730 20 LANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAI 75 (556)
Q Consensus 20 lg~~~~~~g~~~~Al~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al 75 (556)
-+..+.+.+..++|+..|...-+..-.. .-+.+..|.+..+.|+-..|+.+|..+-
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh
Confidence 3344444555555555555544443222 2234444555555555555555555543
No 442
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=84.70 E-value=1 Score=45.13 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=46.7
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCC--CCCCCeeeeccccc-CCC---ChHHH-------HHH--HHhccccCCCeEEE
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLP--SEENPYLFNGDFVD-RGS---FSVEV-------ILT--LFAFKCMCPSAIYL 357 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~--~~~~~~vflGD~vd-rG~---~s~e~-------l~~--l~~lk~~~p~~v~~ 357 (556)
+||.|-|=.||.++.+-+-+..+... ...|.++++||+=- |.. +|+.| =.| -..-....|=-.++
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 46899999999999987544433221 24577999999952 211 12111 111 11223567767788
Q ss_pred eccccccccc
Q 008730 358 SRGNHESKSM 367 (556)
Q Consensus 358 lrGNHE~~~~ 367 (556)
|-||||.+.-
T Consensus 81 IGGNHEAsny 90 (456)
T KOG2863|consen 81 IGGNHEASNY 90 (456)
T ss_pred ecCchHHHHH
Confidence 8999998654
No 443
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=84.58 E-value=4.2 Score=35.79 Aligned_cols=47 Identities=19% Similarity=0.139 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 008730 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK 97 (556)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 97 (556)
....+...+..|+|.-|......++..+|++..+...++.+|.++|.
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555554443
No 444
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.53 E-value=9 Score=29.90 Aligned_cols=61 Identities=20% Similarity=0.077 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK---GYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~l 111 (556)
....|.-++...+.++|+..++++++..++.+. ++-.+..+|...|+|++++++--+-+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667778888888888888888776544 4445556777888888877766554444
No 445
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.42 E-value=1.2 Score=26.63 Aligned_cols=22 Identities=14% Similarity=-0.242 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHH
Q 008730 50 YYANRAFAHTKLEEYGSAIQDA 71 (556)
Q Consensus 50 a~~~lg~~~~~~g~~~~A~~~~ 71 (556)
+...+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555444
No 446
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.41 E-value=12 Score=36.38 Aligned_cols=97 Identities=10% Similarity=0.115 Sum_probs=86.2
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH-HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 008730 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG-SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105 (556)
Q Consensus 27 ~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~-~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 105 (556)
..+..+-++++.+.++-+|.+.+.|..+-.+....|++. .-++..+.++..+.++..+|..+--+....+.++.-+++.
T Consensus 91 ~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~ 170 (318)
T KOG0530|consen 91 MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYA 170 (318)
T ss_pred HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 346778889999999999999999999988888889888 8899999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 008730 106 QQVKKLSPNDPDAAQKVK 123 (556)
Q Consensus 106 ~~al~l~p~~~~~~~~l~ 123 (556)
.+.++.+-.|-.++...-
T Consensus 171 ~~Lle~Di~NNSAWN~Ry 188 (318)
T KOG0530|consen 171 DELLEEDIRNNSAWNQRY 188 (318)
T ss_pred HHHHHHhhhccchhheee
Confidence 999999887777775543
No 447
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=84.21 E-value=4.9 Score=42.74 Aligned_cols=102 Identities=10% Similarity=-0.010 Sum_probs=76.0
Q ss_pred CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
.+++|.+..+|+.+-..+..+ .++++.+.|++.+...|..+.+|.......+..++|+.-...|.+++..--+ .+.|-
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~ 90 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWK 90 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHH
Confidence 357788899999998888777 9999999999999999999999999999999999999999999998854321 22222
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHH
Q 008730 87 -RRGAAYLAMGKFKEALKDFQQVKK 110 (556)
Q Consensus 87 -~lg~~~~~~g~~~~A~~~~~~al~ 110 (556)
.+..+-...++...+....-+|..
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~ 115 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYD 115 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHH
Confidence 233444555655555554444444
No 448
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.14 E-value=5.9 Score=40.85 Aligned_cols=81 Identities=20% Similarity=0.181 Sum_probs=59.7
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHh-------C-CCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730 55 AFAHTKLEEYGSAIQDASKAIEI-------D-PRY----------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (556)
Q Consensus 55 g~~~~~~g~~~~A~~~~~~al~l-------~-p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 116 (556)
|...+++++|..|..-|+.|+++ . |.. ...--.+..||.++++.+.|+..--+.+.++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 33445555555555555555554 2 221 12455788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHH
Q 008730 117 DAAQKVKECEKAVKKLKFEEA 137 (556)
Q Consensus 117 ~~~~~l~~~~~~~~~~~~~~A 137 (556)
.-+..-+.|...+.+ |.+|
T Consensus 263 rnHLrqAavfR~LeR--y~eA 281 (569)
T PF15015_consen 263 RNHLRQAAVFRRLER--YSEA 281 (569)
T ss_pred hHHHHHHHHHHHHHH--HHHH
Confidence 999999999998888 4554
No 449
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.96 E-value=2.7 Score=43.87 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=81.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 008730 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG 96 (556)
Q Consensus 17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 96 (556)
....+.+....|+|++|.....-+-..-.....+...+-..+..+|++++|.....-.+.-.-.+++...--|..-.++|
T Consensus 326 i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~ 405 (831)
T PRK15180 326 IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQ 405 (831)
T ss_pred hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHh
Confidence 34567788889999999988776665555556667777778889999999999988888877778888777777888899
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 008730 97 KFKEALKDFQQVKKLSPND 115 (556)
Q Consensus 97 ~~~~A~~~~~~al~l~p~~ 115 (556)
-+++|..+|++.+.++|..
T Consensus 406 ~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 406 LFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHHHHhccCChh
Confidence 9999999999999998754
No 450
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.77 E-value=27 Score=40.27 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=68.0
Q ss_pred HHHHHHHccCHHHHHHHHHH------HHHh----------------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730 20 LANEAFRAKKYSQAIDLYSQ------AIEL----------------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (556)
Q Consensus 20 lg~~~~~~g~~~~Al~~~~~------al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 77 (556)
.|......+-|++|...|++ |++. .-+.+..|..+|.+..+.+...+|++.|-+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 46666777777887777654 1111 1245788999999999999999999999665
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730 78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (556)
Q Consensus 78 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 112 (556)
++|..|...-.+-.+.|.|++-++++..|-+..
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 677788888888899999999999998887654
No 451
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.02 E-value=10 Score=35.85 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=54.5
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008730 56 FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (556)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 117 (556)
..+.+.+...+|+...+.-++.+|.+......+-..|.-.|+|++|...++-+-++.|++..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34667788999999999999999999888888889999999999999999999999998743
No 452
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=82.95 E-value=32 Score=34.51 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=68.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------------------
Q 008730 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID------------------- 78 (556)
Q Consensus 18 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------------------- 78 (556)
+..-+...+..+..+-+.....|++++|+.+.++..++.- +.--..+|...+++|++.-
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 3444556677788888999999999999999999988752 2333456666666665431
Q ss_pred ----CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008730 79 ----PRY--PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (556)
Q Consensus 79 ----p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 113 (556)
..+ ...-.++|.|-.++|+..+|++.++...+-.|
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 112 23445779999999999999999998887776
No 453
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.72 E-value=4.9 Score=39.47 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=36.8
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008730 55 AFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (556)
Q Consensus 55 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 108 (556)
+..|...|.+.+|++..+++++++|-+-..+..+-.++..+|+--.|++.|++.
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 455666677777777777777777766666666777777777766666666654
No 454
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=81.97 E-value=2.2 Score=42.68 Aligned_cols=71 Identities=23% Similarity=0.252 Sum_probs=39.1
Q ss_pred EeccCCCC---HHHHHHHHHhcCCC-CCCCCeeeecccccCCCChH--H------HHHHHHhccccCC-CeEEEeccccc
Q 008730 297 VCGDVHGQ---FYDLLNIFELNGLP-SEENPYLFNGDFVDRGSFSV--E------VILTLFAFKCMCP-SAIYLSRGNHE 363 (556)
Q Consensus 297 vigDiHG~---~~~l~~~l~~~~~~-~~~~~~vflGD~vdrG~~s~--e------~l~~l~~lk~~~p-~~v~~lrGNHE 363 (556)
-.|+-. | ...+..+++.+... +.-+-+|+.||+++.+.... + .-.+...++..+| -.|+.+.||||
T Consensus 42 ~~G~~~-CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD 120 (296)
T cd00842 42 PWGDYG-CDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHD 120 (296)
T ss_pred CCcCcC-CCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCC
Confidence 455543 3 23344455443221 23456999999998876531 1 1112222332222 46999999999
Q ss_pred ccccc
Q 008730 364 SKSMN 368 (556)
Q Consensus 364 ~~~~~ 368 (556)
....+
T Consensus 121 ~~p~~ 125 (296)
T cd00842 121 SYPVN 125 (296)
T ss_pred CCccc
Confidence 86544
No 455
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.49 E-value=44 Score=31.73 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=57.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 008730 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82 (556)
Q Consensus 20 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 82 (556)
....+.+.+..++|+...+.-++..|.+......+-..+.-.|+|++|...++-+-+++|++.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345678899999999999999999999999999999999999999999999999999999863
No 456
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=80.86 E-value=21 Score=36.77 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CCCChH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-----NS-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEI----DPRYPK 83 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-----~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~~~ 83 (556)
+..|+-+...+-..|+...-...+...++. +. ..+...+.+-.+|...+.|+.|.....++.-- +.....
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 456666777777777766555544444432 11 22445666778888899999998887776521 113467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115 (556)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 115 (556)
.+|.+|.+..-+.+|..|.+++-+|+...|.+
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 88899999999999999999999999999983
No 457
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.81 E-value=7.3 Score=36.33 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHH
Q 008730 31 SQAIDLYSQAIELNS--QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYRRGAAYLAMGKFKEAL 102 (556)
Q Consensus 31 ~~Al~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~~lg~~~~~~g~~~~A~ 102 (556)
++|...|-++ +-.| ++++..+.+|..|. ..+.++|+..+.+++++.+. +++.+..|+.++..+++++.|-
T Consensus 123 ~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4555555442 2233 46888888887665 67889999999999998554 5899999999999999999985
No 458
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.35 E-value=53 Score=36.63 Aligned_cols=108 Identities=20% Similarity=0.108 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---
Q 008730 11 VSRAEELKALANEAF-RAKKYSQAIDLYSQAIELNSQ--NA----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--- 80 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~-~~g~~~~Al~~~~~al~~~p~--~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--- 80 (556)
...+.....+|..++ ...+++.|..++.+++.+... .. .+-+.++.++.+.+... |...++++++..-.
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 456888999999998 779999999999999888744 22 23445677777777766 99999999987544
Q ss_pred -ChHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Q 008730 81 -YPKGYYRRGAA--YLAMGKFKEALKDFQQVKKLS--PNDPDAA 119 (556)
Q Consensus 81 -~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~l~--p~~~~~~ 119 (556)
.+...+++-.+ +...+++..|++.++...... +.++.+.
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 23333444322 223379999999999998886 4555543
No 459
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=80.17 E-value=1.1 Score=45.07 Aligned_cols=84 Identities=17% Similarity=0.040 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 93 (556)
.....+.+..-++.+.+..|+.....+++.+++...+++.++..+..+.++++|++++..+....|++....-.+..+-.
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 34455678888899999999999999999999999999999999999999999999999999999998776655554444
Q ss_pred HcCC
Q 008730 94 AMGK 97 (556)
Q Consensus 94 ~~g~ 97 (556)
...+
T Consensus 355 ~~~~ 358 (372)
T KOG0546|consen 355 KKKQ 358 (372)
T ss_pred HHHH
Confidence 4433
No 460
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.84 E-value=21 Score=44.70 Aligned_cols=117 Identities=18% Similarity=0.076 Sum_probs=91.9
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-CC------
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PR------ 80 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~------ 80 (556)
+.+...++.|.+.|+.....|.++.|-.+.-+|.+.. -+.+...+|..+.+.|+-..|+..+++.+..+ |+
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence 4456678999999999999999999999999998887 57788899999999999999999999999663 22
Q ss_pred ----C------hHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730 81 ----Y------PKGYYRRGAAYLAMGKF--KEALKDFQQVKKLSPNDPDAAQKVKECE 126 (556)
Q Consensus 81 ----~------~~~~~~lg~~~~~~g~~--~~A~~~~~~al~l~p~~~~~~~~l~~~~ 126 (556)
. ..+.+..+.-....++. ++-++.|..+.++.|....-++.+|.-+
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 1 22445555555555653 4577899999999998777666666433
No 461
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=79.82 E-value=19 Score=38.50 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=66.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730 38 SQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 38 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 111 (556)
++-++.+|.+..+|+.+-.-+..+ .++++.+.|++.+...|..+.+|..........++|+.-.+.|.++|.-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 677899999999999998755444 9999999999999999999999999999999999999999999999874
No 462
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.92 E-value=58 Score=37.09 Aligned_cols=99 Identities=18% Similarity=0.043 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQ---------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---- 81 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---- 81 (556)
+.....+-......++++|.....++-..-+. .++.--..|.+....|+.++|++..+.++..=|.+
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 34445566778889999999988887766443 13444556888889999999999999999887764
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008730 82 -PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (556)
Q Consensus 82 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 113 (556)
..++..+|.+..-.|++++|......+.+...
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 55788899999999999999999999998843
No 463
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.73 E-value=7 Score=38.43 Aligned_cols=59 Identities=22% Similarity=0.165 Sum_probs=52.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 008730 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (556)
Q Consensus 17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 75 (556)
+...+..|...|.+.+|+++.++++.++|-+...+..+-..+..+|+--.|+..|++--
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34557788999999999999999999999999999999999999999888888887643
No 464
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.60 E-value=70 Score=34.71 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=72.4
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------------CCCCHHH---HHHHHHHHHHhhC
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL---------------------NSQNAVY---YANRAFAHTKLEE 63 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~---------------------~p~~~~a---~~~lg~~~~~~g~ 63 (556)
..+|-++..+...+.+...+||.+-|.....++|=. .|.+-.. .+..-..+.+.|-
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 356889999999999999999999988888877732 2333222 2233445566788
Q ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 008730 64 YGSAIQDASKAIEIDPR-YPKGYYRRGAAYL-AMGKFKEALKDFQQV 108 (556)
Q Consensus 64 ~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~a 108 (556)
+.-|.++++-.++++|. +|.+...+-..|. +..+|+==+..++.+
T Consensus 358 ~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 358 WRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred hHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999998 8776666655554 445566555555544
No 465
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=78.08 E-value=2 Score=42.83 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=36.4
Q ss_pred ceEeccCCCCHHH----------HHHHHHhcCCC----CCCCCeeeecccccCCCC-----hHHHHHHHHhccccCCCeE
Q 008730 295 FTVCGDVHGQFYD----------LLNIFELNGLP----SEENPYLFNGDFVDRGSF-----SVEVILTLFAFKCMCPSAI 355 (556)
Q Consensus 295 i~vigDiHG~~~~----------l~~~l~~~~~~----~~~~~~vflGD~vdrG~~-----s~e~l~~l~~lk~~~p~~v 355 (556)
|+.+.|+||++.. +..++++.... .....++-.||.+...+. ...++..+-.+.. .+
T Consensus 3 Il~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g~----Da 78 (285)
T cd07405 3 ILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGY----DA 78 (285)
T ss_pred EEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhCC----cE
Confidence 7889999998633 33444433211 223457888999843332 2334444444432 33
Q ss_pred EEecccccc
Q 008730 356 YLSRGNHES 364 (556)
Q Consensus 356 ~~lrGNHE~ 364 (556)
. ..||||.
T Consensus 79 ~-~~GNHEf 86 (285)
T cd07405 79 M-AVGNHEF 86 (285)
T ss_pred E-eeccccc
Confidence 3 3499995
No 466
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.62 E-value=10 Score=35.33 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhhhhHHHHh
Q 008730 65 GSAIQDASKAIEI-DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN----DPDAAQKVKECEKAVKKLKFEEAI 138 (556)
Q Consensus 65 ~~A~~~~~~al~l-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~~l~~~~~~~~~~~~~~Ai 138 (556)
++|...|-++-.. .-++++..+.+|..|. ..+.++|+..+.+++++.+. |++++..|+.++..+++ +++|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~--~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN--YEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc--hhhhh
Confidence 5676666544321 1246888888887665 77899999999999999754 48899999999998888 56653
No 467
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=77.48 E-value=2.4 Score=42.24 Aligned_cols=67 Identities=19% Similarity=0.156 Sum_probs=36.7
Q ss_pred cceEeccCCCCHH----------------HHHHHHHh-cCCCCCCCCeeeecccccCCCCh-------HHHHHHHHhccc
Q 008730 294 HFTVCGDVHGQFY----------------DLLNIFEL-NGLPSEENPYLFNGDFVDRGSFS-------VEVILTLFAFKC 349 (556)
Q Consensus 294 ~i~vigDiHG~~~----------------~l~~~l~~-~~~~~~~~~~vflGD~vdrG~~s-------~e~l~~l~~lk~ 349 (556)
+|+-+.|+||++. .+.+.++. ......+..++..||.++.-+.+ .-++.++-.+.
T Consensus 7 tILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~mg- 85 (282)
T cd07407 7 NFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFRMMP- 85 (282)
T ss_pred EEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHHHhcC-
Confidence 3888999999864 22222221 11112223466799999764333 22344444443
Q ss_pred cCCCeEEEeccccccc
Q 008730 350 MCPSAIYLSRGNHESK 365 (556)
Q Consensus 350 ~~p~~v~~lrGNHE~~ 365 (556)
-=.+..||||..
T Consensus 86 ----yDa~tlGNHEFd 97 (282)
T cd07407 86 ----YDLLTIGNHELY 97 (282)
T ss_pred ----CcEEeecccccC
Confidence 223457999984
No 468
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=77.47 E-value=16 Score=28.24 Aligned_cols=32 Identities=28% Similarity=0.253 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~ 43 (556)
..+..+...|..+-+.|++++|+.+|+++++.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34566777777888888888887777766553
No 469
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.87 E-value=10 Score=26.01 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKK 110 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~ 110 (556)
+.+|.+|..+|+.+.|++.++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677777778888888877777774
No 470
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=76.49 E-value=12 Score=39.30 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCCCEEEeeccccccCceEecCCeEE
Q 008730 467 DVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLI 501 (556)
Q Consensus 467 ~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~i 501 (556)
..++..+-++++++++-||.-.-++...-.|.++.
T Consensus 322 ~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~ 356 (452)
T KOG1378|consen 322 EGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCG 356 (452)
T ss_pred HHHHHHHHHhceeEEEeccceehhccchhhcceee
Confidence 36899999999999999999877776655665543
No 471
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=75.99 E-value=3.7 Score=39.86 Aligned_cols=70 Identities=24% Similarity=0.311 Sum_probs=44.3
Q ss_pred CCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccc
Q 008730 290 PDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 367 (556)
Q Consensus 290 ~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~ 367 (556)
+...+++.|+|.|+...+.. ..+ ..|.++-+||+-.-|- +-||..+=-.+-.+--..=+.|+||||.-+-
T Consensus 59 ~~~~r~VcisdtH~~~~~i~------~~p-~gDvlihagdfT~~g~-~~ev~~fn~~~gslph~yKIVIaGNHELtFd 128 (305)
T KOG3947|consen 59 PGYARFVCISDTHELTFDIN------DIP-DGDVLIHAGDFTNLGL-PEEVIKFNEWLGSLPHEYKIVIAGNHELTFD 128 (305)
T ss_pred CCceEEEEecCcccccCccc------cCC-CCceEEeccCCccccC-HHHHHhhhHHhccCcceeeEEEeeccceeec
Confidence 33568999999999665543 244 4566899999976554 4566654332221111345667999997543
No 472
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=75.98 E-value=2.8 Score=41.98 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=28.0
Q ss_pred CCCCeeeecccccCCCCh---HHHHHHHHhccccCCCeEEEeccccccccc
Q 008730 320 EENPYLFNGDFVDRGSFS---VEVILTLFAFKCMCPSAIYLSRGNHESKSM 367 (556)
Q Consensus 320 ~~~~~vflGD~vdrG~~s---~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~ 367 (556)
..|.+||+||.|+. ... ..++.-..+-.+.+.=-...+.||||....
T Consensus 100 ~PDlVVfTGD~i~g-~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes~ 149 (379)
T KOG1432|consen 100 KPDLVVFTGDNIFG-HSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDESD 149 (379)
T ss_pred CCCEEEEeCCcccc-cccHhHHHHHHHHhhhHhhcCCCeEEEecccccccc
Confidence 34679999999986 333 333333333333333334556899997643
No 473
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=75.68 E-value=27 Score=33.98 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008730 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPR------YPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (556)
Q Consensus 50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 107 (556)
....+|..|+..|+|++|++.|+.+....-. ....+..+..|+..+|+.++.+...-+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445666666667777777777666544221 134555566666666666665555433
No 474
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=75.55 E-value=14 Score=32.61 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
-.+.....+......|++.-|......++..+|++..+...++.++.+++.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999999999999886
No 475
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.54 E-value=6.7 Score=23.88 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=17.8
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008730 28 KKYSQAIDLYSQAIELNSQNAVYYANRAF 56 (556)
Q Consensus 28 g~~~~Al~~~~~al~~~p~~~~a~~~lg~ 56 (556)
|+.+.|...|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34566666666666666666666665543
No 476
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=75.26 E-value=3.5 Score=41.68 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=39.3
Q ss_pred ceEeccCCCCHH------HHHHHHHhcCCC----CCCCCeeeecccccCCCC-------------hHHHHHHHHhccccC
Q 008730 295 FTVCGDVHGQFY------DLLNIFELNGLP----SEENPYLFNGDFVDRGSF-------------SVEVILTLFAFKCMC 351 (556)
Q Consensus 295 i~vigDiHG~~~------~l~~~l~~~~~~----~~~~~~vflGD~vdrG~~-------------s~e~l~~l~~lk~~~ 351 (556)
|+-+.|+||++. .+..+++...-. .....++..||.+.-++. ...++.++-.+...
T Consensus 3 IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g~D- 81 (313)
T cd08162 3 LLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALGVQ- 81 (313)
T ss_pred EEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccCCc-
Confidence 678899999964 333344443211 223468899999875543 33455555555432
Q ss_pred CCeEEEecccccc
Q 008730 352 PSAIYLSRGNHES 364 (556)
Q Consensus 352 p~~v~~lrGNHE~ 364 (556)
.+..||||.
T Consensus 82 ----a~tlGNHEF 90 (313)
T cd08162 82 ----AIALGNHEF 90 (313)
T ss_pred ----EEecccccc
Confidence 345799995
No 477
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=75.12 E-value=5.9 Score=38.73 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=45.5
Q ss_pred cceEeccCCCCHHH--HHHHHHhcCCCCCCCCeeeecccccCC-CChHHHHHHHHhccccCCCeEEEeccccccc
Q 008730 294 HFTVCGDVHGQFYD--LLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESK 365 (556)
Q Consensus 294 ~i~vigDiHG~~~~--l~~~l~~~~~~~~~~~~vflGD~vdrG-~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 365 (556)
||..||||=|.... +.+.|.........+-+|-.||..--| .-+.++...|..+.. .+.. .||||.-
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~----D~iT-lGNH~fD 70 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITPKIAKELLSAGV----DVIT-MGNHTWD 70 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCHHHHHHHHhcCC----CEEE-ecccccC
Confidence 47899999997653 345555543333345577789998766 467888888887763 3444 3999754
No 478
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.94 E-value=40 Score=36.47 Aligned_cols=104 Identities=14% Similarity=0.103 Sum_probs=77.9
Q ss_pred HccCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----C----------
Q 008730 26 RAKKYSQAIDLYSQAIEL------------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-----D---------- 78 (556)
Q Consensus 26 ~~g~~~~Al~~~~~al~~------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~---------- 78 (556)
....|++|...|.-|... .|.+...+..++.+...+|+.+-|.+..++++-. .
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345678888888877765 3667888999999999999999888888887632 2
Q ss_pred ------CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Q 008730 79 ------PRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN-DPDAAQKVKECEKAV 129 (556)
Q Consensus 79 ------p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~l~~~~~~~ 129 (556)
|.| ..+++..-..+.+.|-+..|.++++-.+.++|. +|-+...+-..+...
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr 390 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR 390 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence 222 235555566677889999999999999999998 877666555555433
No 479
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=74.66 E-value=14 Score=40.51 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (556)
Q Consensus 48 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~ 127 (556)
-.++.++|..+..+..+++|.++|.+.-. .-++..||+.+.++++- +.....-|++.+.+..++....
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHH
Confidence 46788888888888888888888866422 23455667766666553 3334445788888888888877
Q ss_pred HHhhhhHHHHhcCC
Q 008730 128 AVKKLKFEEAIAVP 141 (556)
Q Consensus 128 ~~~~~~~~~Ai~~~ 141 (556)
..|. -++|.+.+
T Consensus 864 svGM--C~qAV~a~ 875 (1189)
T KOG2041|consen 864 SVGM--CDQAVEAY 875 (1189)
T ss_pred hhch--HHHHHHHH
Confidence 7776 45665543
No 480
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=74.61 E-value=3.3 Score=39.10 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=38.3
Q ss_pred ceEeccCCCC-----HHHHHHHHHhcC-CCCCCCCeeeecccccCCCChH----------HHHHHHHhcc-----ccCCC
Q 008730 295 FTVCGDVHGQ-----FYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSV----------EVILTLFAFK-----CMCPS 353 (556)
Q Consensus 295 i~vigDiHG~-----~~~l~~~l~~~~-~~~~~~~~vflGD~vdrG~~s~----------e~l~~l~~lk-----~~~p~ 353 (556)
|++++|+|=. ++.|.++|.... -. .-+.+|++|+++|.-.... .....+..+. +..--
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~-~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 79 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDAS-KPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPST 79 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCT-TECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCS
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccC-CCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhccccc
Confidence 4567777643 667777887655 32 3346999999999632221 1111111111 22236
Q ss_pred eEEEeccccccccc
Q 008730 354 AIYLSRGNHESKSM 367 (556)
Q Consensus 354 ~v~~lrGNHE~~~~ 367 (556)
+|+++.|+||....
T Consensus 80 ~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 80 QVVLVPGPNDPTSS 93 (209)
T ss_dssp EEEEE--TTCTT-S
T ss_pred EEEEeCCCcccccc
Confidence 89999999997665
No 481
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=74.13 E-value=14 Score=38.52 Aligned_cols=56 Identities=27% Similarity=0.351 Sum_probs=39.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 008730 19 ALANEAFRAKKYSQAIDLYSQAIELNSQ---------NAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (556)
Q Consensus 19 ~lg~~~~~~g~~~~Al~~~~~al~~~p~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~al 75 (556)
.+.+++.-.|||..|++..+. ++++.. +...++..|.+|+.+++|.+|++.|...+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888877654 333222 34557778888888888888888887776
No 482
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=73.77 E-value=3.8 Score=45.85 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=41.4
Q ss_pred cceEeccCCCCHHH----------------HHHHHHhcCCCCCCCCeeeecccccCCCChH-------------HHHHHH
Q 008730 294 HFTVCGDVHGQFYD----------------LLNIFELNGLPSEENPYLFNGDFVDRGSFSV-------------EVILTL 344 (556)
Q Consensus 294 ~i~vigDiHG~~~~----------------l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~-------------e~l~~l 344 (556)
+|+-..|+||++.. +..++++..-...+..+|-.||.+...+.+- .++..+
T Consensus 27 ~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p~i~am 106 (649)
T PRK09420 27 RIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHPVYKAM 106 (649)
T ss_pred EEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCcchHHHHH
Confidence 48899999999743 3334444432223446889999998665431 255555
Q ss_pred HhccccCCCeEEEecccccc
Q 008730 345 FAFKCMCPSAIYLSRGNHES 364 (556)
Q Consensus 345 ~~lk~~~p~~v~~lrGNHE~ 364 (556)
-.+.. =....||||.
T Consensus 107 N~lgy-----Da~tlGNHEF 121 (649)
T PRK09420 107 NTLDY-----DVGNLGNHEF 121 (649)
T ss_pred HhcCC-----cEEeccchhh
Confidence 55542 2345799995
No 483
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=72.62 E-value=20 Score=34.92 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAI 75 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al 75 (556)
......+|..|+..|+|++|+.+|+.+......+ ..+...+..|+.++|+.++.+...-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4456689999999999999999999997765432 4567778899999999888877765543
No 484
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=72.58 E-value=44 Score=33.03 Aligned_cols=122 Identities=12% Similarity=0.104 Sum_probs=83.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH---HHHhhCH----HHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 20 LANEAFRAKKYSQAIDLYSQAIELNSQ--NAVYYANRAFA---HTKLEEY----GSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 20 lg~~~~~~g~~~~Al~~~~~al~~~p~--~~~a~~~lg~~---~~~~g~~----~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
....++..++|++--+.+.+..+...+ ..+..+..+.. ...+... ....+.++.=++..|++..++..+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 446778899999988888888755432 11111111111 1112111 13556666667889999999999998
Q ss_pred HHHHcC----------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 91 AYLAMG----------------------KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 91 ~~~~~g----------------------~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
.+.... -.+.|..++.+|++++|....+...+-.+-..+|.-.+-.++-..
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~WL~~l~~g 158 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDWLAALFAG 158 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchHHHHHHCC
Confidence 886432 246799999999999999999999998888888876665554433
No 485
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.28 E-value=55 Score=34.09 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC-HHHHHHHHHHHH--HhhCHHHHHHHHHHHHHh
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIEL-NSQN-AVYYANRAFAHT--KLEEYGSAIQDASKAIEI 77 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~-~p~~-~~a~~~lg~~~~--~~g~~~~A~~~~~~al~l 77 (556)
......+..++..++|..|...+...... .++. ...+..++.+|. ..-+|++|.+.+++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45567888999999999999999999985 3333 235555555554 456799999999998765
No 486
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.63 E-value=12 Score=22.71 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730 97 KFKEALKDFQQVKKLSPNDPDAAQKVK 123 (556)
Q Consensus 97 ~~~~A~~~~~~al~l~p~~~~~~~~l~ 123 (556)
+.+.|...|++++...|.+...+..+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 455556666666666665555554444
No 487
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=70.97 E-value=4.2 Score=44.34 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=42.6
Q ss_pred cceEeccCCCCHH------------HH---HHHHHhcCCCCCCCCeeeecccccCCC------ChHHHHHHHHhccccCC
Q 008730 294 HFTVCGDVHGQFY------------DL---LNIFELNGLPSEENPYLFNGDFVDRGS------FSVEVILTLFAFKCMCP 352 (556)
Q Consensus 294 ~i~vigDiHG~~~------------~l---~~~l~~~~~~~~~~~~vflGD~vdrG~------~s~e~l~~l~~lk~~~p 352 (556)
+|+-+.|+||++. -+ ..++++..-...+..+|=.||++++.+ .....+..+-.++..
T Consensus 28 ~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~yD-- 105 (517)
T COG0737 28 TILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALGYD-- 105 (517)
T ss_pred EEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhhcCCc--
Confidence 4889999999999 33 333333332223445788899999843 334566666666522
Q ss_pred CeEEEecccccccc
Q 008730 353 SAIYLSRGNHESKS 366 (556)
Q Consensus 353 ~~v~~lrGNHE~~~ 366 (556)
.+-.||||.-.
T Consensus 106 ---a~tiGNHEFd~ 116 (517)
T COG0737 106 ---AMTLGNHEFDY 116 (517)
T ss_pred ---EEeeccccccc
Confidence 23469999743
No 488
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=70.82 E-value=5 Score=44.77 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=40.3
Q ss_pred cceEeccCCCCHHH----------------HHHHHHhcCCCCCCCCeeeecccccCCCCh-------------HHHHHHH
Q 008730 294 HFTVCGDVHGQFYD----------------LLNIFELNGLPSEENPYLFNGDFVDRGSFS-------------VEVILTL 344 (556)
Q Consensus 294 ~i~vigDiHG~~~~----------------l~~~l~~~~~~~~~~~~vflGD~vdrG~~s-------------~e~l~~l 344 (556)
+|+-..|+||++.. +..++++..-...+..+|-.||.+...+.+ ..++..+
T Consensus 4 ~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~~~m 83 (626)
T TIGR01390 4 RIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVYKAM 83 (626)
T ss_pred EEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCccchhhhhhccccCCCcChHHHHH
Confidence 48889999999753 333444443222334688899999865543 2345555
Q ss_pred HhccccCCCeEEEecccccc
Q 008730 345 FAFKCMCPSAIYLSRGNHES 364 (556)
Q Consensus 345 ~~lk~~~p~~v~~lrGNHE~ 364 (556)
-.+.. . ....||||.
T Consensus 84 N~lgy----D-a~tlGNHEF 98 (626)
T TIGR01390 84 NLLKY----D-VGNLGNHEF 98 (626)
T ss_pred hhcCc----c-EEecccccc
Confidence 44442 2 345799994
No 489
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=70.63 E-value=31 Score=34.74 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 008730 29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (556)
Q Consensus 29 ~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 106 (556)
+|..-..+|+-...+.|+ +..-.|++.+..+..-.+.++...+..... -..+..++-..|..+.++|+.++|...|+
T Consensus 311 DW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 555555556555555554 445566777776666667777766655443 12345567778999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHH
Q 008730 107 QVKKLSPNDPDAAQKVKEC 125 (556)
Q Consensus 107 ~al~l~p~~~~~~~~l~~~ 125 (556)
+|+.+.++..+..+.....
T Consensus 390 rAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 390 RAIALARNAAERAFLRQRL 408 (415)
T ss_pred HHHHhcCChHHHHHHHHHH
Confidence 9999999887766555543
No 490
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=70.58 E-value=12 Score=34.09 Aligned_cols=85 Identities=16% Similarity=0.242 Sum_probs=64.6
Q ss_pred CCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchh----------------hHHhhhhHHH
Q 008730 322 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEG----------------EVRSKLSETF 385 (556)
Q Consensus 322 ~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~----------------~~~~~~~~~~ 385 (556)
..+||+| -|-+.-|.+.++-.++.+|-.+.++ .|+-|.|..+....|.. |....|-..+
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~ltSv 114 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWLTSV 114 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhhhhhhhhhhH
Confidence 3589987 5889999999999999888777766 89999988876544321 2223334467
Q ss_pred HHHHHHHhcccccccccCCeEEEEec
Q 008730 386 VELFAEVFCCLPLAHVLNQKVFVVHG 411 (556)
Q Consensus 386 ~~~~~~~~~~lP~~~~i~~~~~~vHg 411 (556)
+..+...+-++++...+-.+++.+.|
T Consensus 115 ~Tti~all~s~~lv~RirPdlil~NG 140 (211)
T KOG3339|consen 115 FTTIWALLQSFVLVWRIRPDLILCNG 140 (211)
T ss_pred HHHHHHHHHHheEEEecCCCEEEECC
Confidence 77888888888998888778888887
No 491
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=70.29 E-value=30 Score=38.19 Aligned_cols=89 Identities=11% Similarity=0.170 Sum_probs=71.7
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
..+...-+++.+.|..+.....|++|.++|.+.-. ..+...|++++..|++-. .....-|++.+.+-.
T Consensus 790 ~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~ 857 (1189)
T KOG2041|consen 790 DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELE----VLARTLPEDSELLPV 857 (1189)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHH
Confidence 34555678899999999999999999999988533 346788999998887653 444456788889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 008730 88 RGAAYLAMGKFKEALKDFQQV 108 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~a 108 (556)
+|..+...|--++|.+.|.+.
T Consensus 858 ~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 858 MADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHHhhchHHHHHHHHHhc
Confidence 999999999999999888654
No 492
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=69.38 E-value=31 Score=36.06 Aligned_cols=58 Identities=22% Similarity=0.430 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHCCCC----EEEeeccccccCce---EecCCeEEEEec--CCCCCCCCCCeEEEEEE
Q 008730 465 GADVTKRFLQDNSLD----LVVRSHEVKDEGYE---IEHDGKLITVFS--APNYCDQMGNKGAFIRF 522 (556)
Q Consensus 465 g~~~~~~fl~~~~~~----~iir~H~~~~~G~~---~~~~~~~itvfS--a~~y~~~~~n~~a~~~~ 522 (556)
..+...+.|+..|+. .||.||.++.++-- +-.|||+|-|-. |.-|....+=.|=.|.-
T Consensus 514 de~ic~kil~eFGLdpe~ghiINGHtPVke~~GE~PIKAngKliVIDGGFskAYqs~TgiAGYTllY 580 (648)
T COG3855 514 DEEICRKILEEFGLDPEGGHIINGHTPVKEKNGENPIKANGKLIVIDGGFSKAYQSTTGIAGYTLLY 580 (648)
T ss_pred hHHHHHHHHHHhCCCcccCceecCCCcccccCCCCCccCCCeEEEEcCchhhhhhcccccceeEeee
Confidence 366788889999886 79999999875432 456999998843 33466544444444443
No 493
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.22 E-value=32 Score=35.53 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Q 008730 16 ELKALANEAFRAKKYSQAIDLYSQA 40 (556)
Q Consensus 16 ~~~~lg~~~~~~g~~~~Al~~~~~a 40 (556)
++..+|.-|...|+++.|+..|-++
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~ 176 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRA 176 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhh
Confidence 3444444555555555555555443
No 494
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=68.59 E-value=23 Score=27.46 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 98 FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 98 ~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
|.+|++.+.+++...|+++........+...+.+
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 3445555555666678877766666666666555
No 495
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.40 E-value=37 Score=39.21 Aligned_cols=117 Identities=21% Similarity=0.180 Sum_probs=87.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----------CC-----
Q 008730 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-----------PR----- 80 (556)
Q Consensus 17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----------p~----- 80 (556)
....|+.++..|.|+.|.-+|.. ..-|..+|..+..+|+|+.|.+..++|-... ..
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH
Confidence 45678899999999999888865 4457889999999999999999999885331 00
Q ss_pred ---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 81 ---------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 81 ---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
..+-+-.+-.-|...|-+++-+..++.++-+...+-..+-.++.+|.+.+-.+.-+.++++
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLF 1338 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 1234455666778889999999999999998877777777788877765543344444443
No 496
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.33 E-value=12 Score=29.09 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~ 43 (556)
..+..+...|..+-+.|+|++|+.+|.++++.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566777788888888888888888887764
No 497
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=67.95 E-value=13 Score=28.00 Aligned_cols=31 Identities=45% Similarity=0.547 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~ 43 (556)
.+-.+...|..+-+.|++++|+.+|.++++.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4556667777777788888887777777653
No 498
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=66.81 E-value=14 Score=28.80 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~ 42 (556)
..+..+...|...-+.|+|++|+.+|.++++
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456677777777788888887777776665
No 499
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=66.42 E-value=16 Score=36.10 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=50.3
Q ss_pred CCCCCcceEeccCC----CCHHHHHHHHHhcC-C-CC--CCCCeeeecccccCC----CCh----HHHHHHHHhc-cccC
Q 008730 289 IPDGKHFTVCGDVH----GQFYDLLNIFELNG-L-PS--EENPYLFNGDFVDRG----SFS----VEVILTLFAF-KCMC 351 (556)
Q Consensus 289 ~~~~~~i~vigDiH----G~~~~l~~~l~~~~-~-~~--~~~~~vflGD~vdrG----~~s----~e~l~~l~~l-k~~~ 351 (556)
.+.+.+++|+||+| -.++.|.++|+... . +. ....+||.|+++-+. ..+ .|-++-|..+ ...|
T Consensus 24 ~~~~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~f 103 (291)
T PTZ00235 24 NDKRHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKF 103 (291)
T ss_pred CCCceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhC
Confidence 34456799999999 56778888888662 2 10 123499999998663 222 2333444331 2234
Q ss_pred C-----CeEEEecccccccc
Q 008730 352 P-----SAIYLSRGNHESKS 366 (556)
Q Consensus 352 p-----~~v~~lrGNHE~~~ 366 (556)
| .++++++|-.|-+.
T Consensus 104 p~L~~~s~fVFVPGpnDPw~ 123 (291)
T PTZ00235 104 KLILEHCYLIFIPGINDPCA 123 (291)
T ss_pred hHHHhcCeEEEECCCCCCCc
Confidence 4 79999999999754
No 500
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.34 E-value=30 Score=32.05 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730 64 YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (556)
Q Consensus 64 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 114 (556)
.+..++..++.++..| ++.++.+++.++..+|+.++|....+++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 5566777788888888 5889999999999999999999999999999993
Done!