Query 008730
Match_columns 556
No_of_seqs 581 out of 4737
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 10:24:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wao_1 Serine/threonine protei 100.0 5.6E-90 1.9E-94 738.7 39.4 474 10-555 2-477 (477)
2 3h63_A Serine/threonine-protei 100.0 4.5E-84 1.5E-88 640.3 29.2 315 234-548 1-315 (315)
3 3icf_A PPT, serine/threonine-p 100.0 3.3E-84 1.1E-88 645.7 28.1 320 232-554 2-335 (335)
4 3ll8_A Serine/threonine-protei 100.0 5.2E-75 1.8E-79 580.6 29.3 290 249-546 30-333 (357)
5 3e7a_A PP-1A, serine/threonine 100.0 4.2E-74 1.4E-78 565.0 28.1 282 249-537 8-298 (299)
6 1aui_A Calcineurin, serine/thr 100.0 5.8E-71 2E-75 570.8 28.2 291 248-546 42-346 (521)
7 2ie4_C PP2A-alpha;, serine/thr 100.0 3.3E-70 1.1E-74 544.1 29.3 291 244-541 5-296 (309)
8 1fjm_A Protein serine/threonin 100.0 3.4E-68 1.1E-72 532.3 28.6 285 249-540 9-302 (330)
9 2z72_A Protein-tyrosine-phosph 100.0 1.9E-43 6.5E-48 359.8 -8.0 231 278-524 60-320 (342)
10 2dfj_A Diadenosinetetraphospha 100.0 4E-33 1.4E-37 275.2 2.5 196 293-496 1-211 (280)
11 2qjc_A Diadenosine tetraphosph 99.9 7.5E-24 2.6E-28 207.6 7.4 220 277-536 7-246 (262)
12 1g5b_A Serine/threonine protei 99.9 1.3E-21 4.6E-26 187.1 12.4 168 283-489 3-190 (221)
13 4gco_A Protein STI-1; structur 99.8 3.6E-19 1.2E-23 154.4 18.5 122 5-126 4-125 (126)
14 4ga2_A E3 SUMO-protein ligase 99.7 4E-17 1.4E-21 145.8 14.2 125 7-131 24-149 (150)
15 3gyz_A Chaperone protein IPGC; 99.7 1.8E-16 6.3E-21 141.8 18.0 112 5-116 27-138 (151)
16 3upv_A Heat shock protein STI1 99.7 2.1E-16 7.2E-21 135.9 16.6 118 11-128 1-124 (126)
17 4gyw_A UDP-N-acetylglucosamine 99.7 8.1E-17 2.8E-21 179.3 17.5 133 8-142 3-135 (723)
18 3rqz_A Metallophosphoesterase; 99.7 1.4E-16 4.7E-21 154.7 14.5 190 292-533 3-217 (246)
19 2xcb_A PCRH, regulatory protei 99.7 8.4E-16 2.9E-20 135.5 17.7 128 5-132 9-136 (142)
20 2vgx_A Chaperone SYCD; alterna 99.7 7.3E-16 2.5E-20 137.3 17.2 124 8-131 15-138 (148)
21 3sz7_A HSC70 cochaperone (SGT) 99.7 1.7E-15 5.9E-20 136.7 18.8 119 7-125 4-122 (164)
22 2pl2_A Hypothetical conserved 99.7 2.7E-16 9.4E-21 149.4 13.9 130 11-142 2-142 (217)
23 4gcn_A Protein STI-1; structur 99.7 7.9E-16 2.7E-20 133.3 15.3 115 9-124 3-124 (127)
24 3vtx_A MAMA; tetratricopeptide 99.7 1.9E-15 6.4E-20 138.8 18.0 129 12-142 3-131 (184)
25 2pl2_A Hypothetical conserved 99.7 1E-15 3.4E-20 145.4 16.7 132 8-142 33-175 (217)
26 3rkv_A Putative peptidylprolyl 99.7 9.1E-16 3.1E-20 138.3 15.5 124 8-131 5-147 (162)
27 1nnw_A Hypothetical protein; s 99.7 9.4E-16 3.2E-20 149.3 16.5 198 293-534 2-222 (252)
28 2hr2_A Hypothetical protein; a 99.7 2.9E-16 1E-20 139.7 11.3 119 12-130 9-150 (159)
29 3urz_A Uncharacterized protein 99.7 2.5E-15 8.5E-20 141.7 16.8 130 13-142 3-148 (208)
30 2lni_A Stress-induced-phosphop 99.6 4.9E-15 1.7E-19 127.3 16.0 126 5-130 7-132 (133)
31 2vyi_A SGTA protein; chaperone 99.6 1.7E-14 5.9E-19 123.0 18.8 126 6-131 4-129 (131)
32 4ga2_A E3 SUMO-protein ligase 99.6 3.7E-16 1.3E-20 139.5 8.0 114 19-132 2-115 (150)
33 2h6f_A Protein farnesyltransfe 99.6 1.6E-15 5.6E-20 156.7 13.9 134 7-142 90-224 (382)
34 1a17_A Serine/threonine protei 99.6 1.5E-14 5.2E-19 129.5 18.6 135 8-142 7-141 (166)
35 4gyw_A UDP-N-acetylglucosamine 99.6 3E-15 1E-19 166.7 16.5 124 9-132 38-161 (723)
36 3vtx_A MAMA; tetratricopeptide 99.6 8.8E-15 3E-19 134.2 15.8 132 9-142 34-165 (184)
37 1p5q_A FKBP52, FK506-binding p 99.6 1.8E-14 6.2E-19 146.4 19.4 124 9-132 142-280 (336)
38 3q49_B STIP1 homology and U bo 99.6 1.3E-14 4.5E-19 126.0 15.7 123 9-131 4-131 (137)
39 4i17_A Hypothetical protein; T 99.6 1E-14 3.5E-19 138.8 16.1 128 13-142 6-141 (228)
40 1elw_A TPR1-domain of HOP; HOP 99.6 6.3E-14 2.2E-18 117.3 17.5 115 12-126 2-116 (118)
41 1hxi_A PEX5, peroxisome target 99.6 1.1E-14 3.6E-19 125.0 12.7 104 14-117 17-120 (121)
42 2h6f_A Protein farnesyltransfe 99.6 1.1E-14 3.7E-19 150.5 14.7 122 9-130 126-248 (382)
43 3gyz_A Chaperone protein IPGC; 99.6 3.1E-15 1.1E-19 133.7 9.0 113 28-142 16-128 (151)
44 2fbn_A 70 kDa peptidylprolyl i 99.6 6.1E-14 2.1E-18 130.7 18.3 123 9-131 33-171 (198)
45 2dba_A Smooth muscle cell asso 99.6 8.1E-14 2.8E-18 122.1 16.6 119 8-126 22-143 (148)
46 1na0_A Designed protein CTPR3; 99.6 1.7E-13 5.8E-18 115.7 18.0 117 13-129 8-124 (125)
47 3qfm_A SAPH, putative uncharac 99.6 1.2E-14 4.1E-19 142.8 12.1 113 294-412 13-138 (270)
48 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 5.2E-14 1.8E-18 149.3 17.0 124 9-132 263-401 (457)
49 2pzi_A Probable serine/threoni 99.5 3.9E-14 1.3E-18 157.7 15.5 134 8-144 427-560 (681)
50 4i17_A Hypothetical protein; T 99.5 1E-13 3.4E-18 131.9 15.7 131 12-142 40-179 (228)
51 1elr_A TPR2A-domain of HOP; HO 99.5 2.3E-13 7.9E-18 116.1 16.3 119 12-131 2-127 (131)
52 4gco_A Protein STI-1; structur 99.5 2.3E-14 7.9E-19 123.8 9.7 102 39-142 4-105 (126)
53 2xev_A YBGF; tetratricopeptide 99.5 2.3E-13 7.9E-18 116.7 15.5 115 15-129 3-123 (129)
54 1ihg_A Cyclophilin 40; ppiase 99.5 1.9E-13 6.7E-18 140.6 16.4 122 11-132 220-357 (370)
55 3as5_A MAMA; tetratricopeptide 99.5 9.9E-13 3.4E-17 119.1 18.9 132 9-142 37-168 (186)
56 1zu2_A Mitochondrial import re 99.5 1.1E-13 3.6E-18 122.9 11.8 102 25-126 13-135 (158)
57 2fo7_A Synthetic consensus TPR 99.5 8.3E-13 2.8E-17 112.7 16.8 126 15-142 2-127 (136)
58 3qky_A Outer membrane assembly 99.5 2.6E-13 8.8E-18 132.0 14.8 133 8-142 9-172 (261)
59 1hh8_A P67PHOX, NCF-2, neutrop 99.5 6.3E-13 2.2E-17 124.5 16.4 126 12-142 4-145 (213)
60 3urz_A Uncharacterized protein 99.5 7.7E-13 2.6E-17 124.5 16.9 122 9-131 33-172 (208)
61 2vsy_A XCC0866; transferase, g 99.5 3.2E-13 1.1E-17 147.1 15.5 133 8-142 17-152 (568)
62 4abn_A Tetratricopeptide repea 99.5 1.7E-13 5.8E-18 145.9 12.9 133 9-144 97-247 (474)
63 2kck_A TPR repeat; tetratricop 99.5 1.8E-13 6.3E-18 113.4 9.4 106 11-116 3-111 (112)
64 4abn_A Tetratricopeptide repea 99.5 5.9E-13 2E-17 141.8 15.6 130 10-142 167-316 (474)
65 2q7f_A YRRB protein; TPR, prot 99.5 2.4E-12 8.3E-17 122.5 18.3 132 9-142 52-183 (243)
66 1w3b_A UDP-N-acetylglucosamine 99.5 9.8E-13 3.4E-17 135.3 16.6 131 10-142 165-295 (388)
67 2c2l_A CHIP, carboxy terminus 99.5 8.6E-13 3E-17 130.4 15.4 104 12-115 2-105 (281)
68 2e2e_A Formate-dependent nitri 99.4 1.5E-12 5.2E-17 118.5 15.7 116 10-125 40-158 (177)
69 1xnf_A Lipoprotein NLPI; TPR, 99.4 3.4E-12 1.2E-16 123.9 19.0 130 10-142 39-168 (275)
70 3cv0_A Peroxisome targeting si 99.4 1.4E-12 4.8E-17 129.8 16.6 139 10-150 168-318 (327)
71 2vq2_A PILW, putative fimbrial 99.4 2.3E-12 8E-17 120.8 17.1 132 9-142 3-137 (225)
72 3k9i_A BH0479 protein; putativ 99.4 1.8E-13 6.1E-18 116.2 8.5 101 26-126 2-105 (117)
73 3as5_A MAMA; tetratricopeptide 99.4 1.8E-12 6.2E-17 117.3 15.7 130 11-142 5-134 (186)
74 2vgx_A Chaperone SYCD; alterna 99.4 2.2E-13 7.4E-18 121.2 9.1 109 32-142 5-113 (148)
75 1w3b_A UDP-N-acetylglucosamine 99.4 8.6E-13 2.9E-17 135.8 15.0 131 10-142 199-329 (388)
76 4eqf_A PEX5-related protein; a 99.4 1.3E-12 4.4E-17 133.2 16.0 129 12-142 63-237 (365)
77 3qky_A Outer membrane assembly 99.4 1.2E-12 4.1E-17 127.3 14.9 131 12-142 50-219 (261)
78 3uq3_A Heat shock protein STI1 99.4 2.3E-12 7.9E-17 123.5 16.7 128 13-142 78-231 (258)
79 3u4t_A TPR repeat-containing p 99.4 8.7E-13 3E-17 128.2 13.9 127 14-143 3-133 (272)
80 2q7f_A YRRB protein; TPR, prot 99.4 2.7E-12 9.1E-17 122.2 16.6 131 10-142 87-217 (243)
81 1fch_A Peroxisomal targeting s 99.4 1.1E-12 3.8E-17 133.3 14.3 120 13-132 216-346 (368)
82 2if4_A ATFKBP42; FKBP-like, al 99.4 1.8E-13 6E-18 139.2 8.0 121 10-130 175-312 (338)
83 2ho1_A Type 4 fimbrial biogene 99.4 2.9E-12 9.8E-17 123.1 15.7 133 8-142 30-165 (252)
84 2vq2_A PILW, putative fimbrial 99.4 5.1E-12 1.7E-16 118.4 16.8 131 10-142 38-171 (225)
85 2ho1_A Type 4 fimbrial biogene 99.4 4.5E-12 1.6E-16 121.7 16.7 131 10-142 67-199 (252)
86 3hym_B Cell division cycle pro 99.4 3.7E-12 1.3E-16 126.9 16.2 131 10-142 86-217 (330)
87 3hym_B Cell division cycle pro 99.4 3.6E-12 1.2E-16 126.9 16.2 130 10-141 121-259 (330)
88 3qou_A Protein YBBN; thioredox 99.4 8.4E-13 2.9E-17 130.9 11.4 130 11-142 114-243 (287)
89 4eqf_A PEX5-related protein; a 99.4 2.6E-12 9.1E-17 130.8 15.3 120 13-132 212-343 (365)
90 3uq3_A Heat shock protein STI1 99.4 4.7E-12 1.6E-16 121.4 15.9 117 9-125 134-256 (258)
91 2r5s_A Uncharacterized protein 99.4 3.3E-13 1.1E-17 123.3 7.1 129 11-142 3-132 (176)
92 2yhc_A BAMD, UPF0169 lipoprote 99.4 2.4E-12 8.1E-17 122.6 13.3 128 13-142 3-171 (225)
93 2e2e_A Formate-dependent nitri 99.4 1.6E-12 5.5E-17 118.3 11.3 120 21-142 17-139 (177)
94 2pzi_A Probable serine/threoni 99.4 4.3E-13 1.5E-17 149.3 8.9 120 10-130 463-582 (681)
95 2yhc_A BAMD, UPF0169 lipoprote 99.4 3.1E-12 1.1E-16 121.7 13.7 130 11-142 38-208 (225)
96 3ieg_A DNAJ homolog subfamily 99.4 3.6E-12 1.2E-16 128.3 14.8 128 13-142 2-144 (359)
97 2xcb_A PCRH, regulatory protei 99.4 1.6E-12 5.4E-17 114.3 9.6 106 35-142 5-110 (142)
98 1fch_A Peroxisomal targeting s 99.4 1.5E-11 5.1E-16 124.9 17.8 100 14-113 64-163 (368)
99 3ieg_A DNAJ homolog subfamily 99.4 1.2E-11 4E-16 124.5 16.6 132 9-142 32-178 (359)
100 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1.6E-11 5.4E-16 114.9 16.0 105 13-117 36-156 (213)
101 2y4t_A DNAJ homolog subfamily 99.3 2E-11 6.8E-16 127.7 17.7 134 7-142 19-167 (450)
102 2r5s_A Uncharacterized protein 99.3 6.2E-12 2.1E-16 114.7 11.4 124 8-132 34-160 (176)
103 3qou_A Protein YBBN; thioredox 99.3 1E-11 3.4E-16 123.1 13.0 124 9-132 146-271 (287)
104 1qqe_A Vesicular transport pro 99.3 8.5E-12 2.9E-16 123.8 12.4 129 12-142 75-223 (292)
105 3u4t_A TPR repeat-containing p 99.3 2.2E-11 7.4E-16 118.2 14.8 116 11-127 34-154 (272)
106 3mkr_A Coatomer subunit epsilo 99.3 3.8E-11 1.3E-15 119.2 16.3 121 11-131 127-249 (291)
107 2fo7_A Synthetic consensus TPR 99.3 5.3E-11 1.8E-15 101.3 14.7 106 10-115 31-136 (136)
108 2kat_A Uncharacterized protein 99.3 4.5E-11 1.5E-15 100.6 13.6 101 31-131 2-104 (115)
109 2l6j_A TPR repeat-containing p 99.3 2.8E-12 9.5E-17 106.6 5.7 94 13-106 3-102 (111)
110 3upv_A Heat shock protein STI1 99.3 3E-11 1E-15 103.3 12.4 96 45-142 1-96 (126)
111 3edt_B KLC 2, kinesin light ch 99.3 1.9E-11 6.3E-16 118.6 12.4 132 9-142 38-193 (283)
112 2vsy_A XCC0866; transferase, g 99.3 1.4E-11 4.9E-16 133.9 12.8 114 27-142 2-115 (568)
113 3fp2_A TPR repeat-containing p 99.3 3.1E-11 1E-15 129.2 14.8 127 14-142 276-402 (537)
114 2y4t_A DNAJ homolog subfamily 99.3 6.3E-11 2.1E-15 123.9 16.3 118 14-131 211-344 (450)
115 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.9E-11 6.6E-16 118.5 11.3 118 23-142 14-135 (275)
116 2xpi_A Anaphase-promoting comp 99.2 1.2E-10 4.1E-15 126.5 18.1 131 10-142 369-499 (597)
117 1p5q_A FKBP52, FK506-binding p 99.2 5.1E-12 1.8E-16 128.2 6.4 115 26-142 125-254 (336)
118 2xpi_A Anaphase-promoting comp 99.2 5.4E-11 1.8E-15 129.3 14.7 131 10-142 403-540 (597)
119 4gcn_A Protein STI-1; structur 99.2 4.5E-11 1.5E-15 103.0 11.2 94 47-142 7-107 (127)
120 3sz7_A HSC70 cochaperone (SGT) 99.2 4.7E-11 1.6E-15 107.3 11.8 97 44-142 7-103 (164)
121 1hxi_A PEX5, peroxisome target 99.2 4.2E-11 1.4E-15 102.3 10.8 91 50-142 19-109 (121)
122 2ond_A Cleavage stimulation fa 99.2 6.3E-11 2.2E-15 118.3 13.7 131 10-142 95-227 (308)
123 3mkr_A Coatomer subunit epsilo 99.2 8.6E-11 2.9E-15 116.6 14.5 124 11-141 98-223 (291)
124 2gw1_A Mitochondrial precursor 99.2 2.2E-11 7.5E-16 129.3 10.5 118 11-128 301-424 (514)
125 1na3_A Designed protein CTPR2; 99.2 1.6E-10 5.4E-15 92.1 13.0 85 12-96 7-91 (91)
126 3cv0_A Peroxisome targeting si 99.2 5.1E-11 1.7E-15 118.4 12.3 118 23-142 147-264 (327)
127 2gw1_A Mitochondrial precursor 99.2 2.3E-10 7.7E-15 121.4 17.8 105 11-116 3-107 (514)
128 1qqe_A Vesicular transport pro 99.2 5.2E-11 1.8E-15 118.1 11.9 130 13-142 116-264 (292)
129 2hr2_A Hypothetical protein; a 99.2 3.1E-11 1.1E-15 107.3 8.9 95 48-144 11-128 (159)
130 3edt_B KLC 2, kinesin light ch 99.2 6.1E-11 2.1E-15 114.9 11.9 104 8-111 79-198 (283)
131 3fp2_A TPR repeat-containing p 99.2 8.3E-11 2.8E-15 125.8 14.1 126 14-142 243-368 (537)
132 3q49_B STIP1 homology and U bo 99.2 2.7E-10 9.2E-15 98.3 13.8 99 42-142 3-101 (137)
133 4g1t_A Interferon-induced prot 99.2 3.5E-10 1.2E-14 119.2 17.3 122 10-131 47-187 (472)
134 1ouv_A Conserved hypothetical 99.2 5E-10 1.7E-14 109.1 17.0 125 10-142 2-138 (273)
135 2l6j_A TPR repeat-containing p 99.2 1.1E-10 3.6E-15 96.8 10.3 94 47-142 3-102 (111)
136 2ond_A Cleavage stimulation fa 99.2 1.3E-10 4.3E-15 116.1 12.5 131 10-142 46-193 (308)
137 3nf1_A KLC 1, kinesin light ch 99.2 8.6E-11 2.9E-15 115.8 10.8 136 6-143 19-178 (311)
138 1na3_A Designed protein CTPR2; 99.2 3.5E-10 1.2E-14 90.0 11.9 84 46-129 7-90 (91)
139 2kck_A TPR repeat; tetratricop 99.1 4.1E-11 1.4E-15 99.0 6.3 98 43-142 1-101 (112)
140 2kc7_A BFR218_protein; tetratr 99.1 8.4E-11 2.9E-15 95.8 8.1 92 17-116 3-95 (99)
141 1a17_A Serine/threonine protei 99.1 5E-10 1.7E-14 99.6 13.9 102 10-111 43-146 (166)
142 3ulq_A Response regulator aspa 99.1 2.3E-10 7.8E-15 117.6 12.5 132 9-142 138-288 (383)
143 3ro3_A PINS homolog, G-protein 99.1 3E-10 1E-14 99.9 11.4 131 10-142 5-153 (164)
144 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 2.1E-11 7.2E-16 129.1 4.3 115 26-142 246-375 (457)
145 3nf1_A KLC 1, kinesin light ch 99.1 2.4E-10 8.2E-15 112.6 11.7 132 9-142 64-219 (311)
146 3ma5_A Tetratricopeptide repea 99.1 5.5E-10 1.9E-14 91.7 11.9 88 43-130 2-91 (100)
147 2fbn_A 70 kDa peptidylprolyl i 99.1 4.6E-11 1.6E-15 111.0 5.8 123 18-142 8-146 (198)
148 1dce_A Protein (RAB geranylger 99.1 3.4E-10 1.2E-14 122.8 13.5 121 9-129 58-191 (567)
149 1s3l_A Hypothetical protein MJ 99.1 1.2E-09 4.2E-14 101.0 15.0 65 293-367 26-90 (190)
150 4a1s_A PINS, partner of inscut 99.1 8.3E-10 2.9E-14 113.9 14.0 122 10-131 44-181 (411)
151 4g1t_A Interferon-induced prot 99.1 1.2E-09 4.1E-14 115.0 15.0 131 10-142 132-271 (472)
152 1zu2_A Mitochondrial import re 99.1 4.2E-10 1.4E-14 99.8 9.5 95 8-123 30-145 (158)
153 3dra_A Protein farnesyltransfe 99.1 7.9E-10 2.7E-14 110.1 12.3 116 16-131 34-159 (306)
154 1ouv_A Conserved hypothetical 99.1 3.9E-09 1.3E-13 102.7 16.9 124 11-142 35-174 (273)
155 2qfc_A PLCR protein; TPR, HTH, 99.1 1.8E-09 6.1E-14 106.8 14.6 118 14-131 115-251 (293)
156 3gw4_A Uncharacterized protein 99.0 7.4E-10 2.5E-14 102.2 10.8 129 12-142 24-171 (203)
157 1elw_A TPR1-domain of HOP; HOP 99.0 1.9E-09 6.5E-14 89.5 12.2 94 47-142 3-96 (118)
158 3rkv_A Putative peptidylprolyl 99.0 4.1E-10 1.4E-14 100.9 8.5 93 48-142 11-121 (162)
159 3k9i_A BH0479 protein; putativ 99.0 1.2E-09 4.1E-14 92.2 10.7 85 10-94 23-107 (117)
160 2lni_A Stress-induced-phosphop 99.0 1.4E-09 4.8E-14 92.7 10.8 97 44-142 12-108 (133)
161 3dss_A Geranylgeranyl transfer 99.0 3.6E-09 1.2E-13 106.1 15.0 123 8-130 58-193 (331)
162 1wao_1 Serine/threonine protei 99.0 2.6E-10 9E-15 121.3 7.2 106 10-115 36-154 (477)
163 2ifu_A Gamma-SNAP; membrane fu 99.0 9.1E-10 3.1E-14 109.9 10.7 128 12-142 74-219 (307)
164 3ulq_A Response regulator aspa 99.0 8.1E-10 2.8E-14 113.5 10.5 125 17-143 106-249 (383)
165 3u3w_A Transcriptional activat 99.0 8.6E-10 2.9E-14 109.1 10.1 127 15-142 116-261 (293)
166 2vyi_A SGTA protein; chaperone 99.0 2.6E-09 9E-14 90.3 11.7 89 10-98 42-130 (131)
167 3dra_A Protein farnesyltransfe 99.0 3.9E-09 1.3E-13 105.1 14.5 123 9-131 98-235 (306)
168 3q15_A PSP28, response regulat 99.0 1.2E-09 4.1E-14 112.1 11.0 132 9-142 136-285 (378)
169 3sf4_A G-protein-signaling mod 99.0 1.4E-09 4.8E-14 111.4 11.1 131 10-142 183-331 (406)
170 3ma5_A Tetratricopeptide repea 99.0 2.4E-09 8.2E-14 87.8 10.1 85 9-93 2-88 (100)
171 3ro2_A PINS homolog, G-protein 99.0 3.8E-09 1.3E-13 104.5 13.5 120 12-131 3-138 (338)
172 2qfc_A PLCR protein; TPR, HTH, 99.0 1.5E-08 5.2E-13 100.0 17.7 132 11-144 72-222 (293)
173 1na0_A Designed protein CTPR3; 99.0 8.7E-09 3E-13 86.2 13.5 98 43-142 3-101 (125)
174 3rjv_A Putative SEL1 repeat pr 99.0 2.1E-09 7.2E-14 101.2 10.7 126 12-142 16-153 (212)
175 2xev_A YBGF; tetratricopeptide 99.0 4.2E-09 1.4E-13 89.6 11.4 92 49-142 3-100 (129)
176 1dce_A Protein (RAB geranylger 99.0 2E-09 6.7E-14 116.8 11.4 123 9-131 102-241 (567)
177 2dba_A Smooth muscle cell asso 99.0 5.6E-09 1.9E-13 90.8 12.2 99 42-142 22-123 (148)
178 2c2l_A CHIP, carboxy terminus 99.0 4.3E-09 1.5E-13 103.7 12.7 97 45-143 1-97 (281)
179 1uf3_A Hypothetical protein TT 98.9 4.5E-09 1.5E-13 99.8 12.3 72 293-366 6-77 (228)
180 3ck2_A Conserved uncharacteriz 98.9 4.5E-09 1.5E-13 96.0 11.7 110 293-491 7-119 (176)
181 3sf4_A G-protein-signaling mod 98.9 3.6E-09 1.2E-13 108.3 12.1 121 11-131 6-142 (406)
182 2a22_A Vacuolar protein sortin 98.9 3.2E-09 1.1E-13 100.4 10.6 119 293-489 26-153 (215)
183 2ifu_A Gamma-SNAP; membrane fu 98.9 2.8E-09 9.6E-14 106.3 10.7 128 12-142 34-179 (307)
184 2if4_A ATFKBP42; FKBP-like, al 98.9 7.4E-10 2.5E-14 112.3 6.3 103 15-117 231-334 (338)
185 3dss_A Geranylgeranyl transfer 98.9 2E-08 6.8E-13 100.7 16.5 119 9-127 103-238 (331)
186 3rjv_A Putative SEL1 repeat pr 98.9 3.4E-09 1.2E-13 99.7 10.3 127 12-142 48-192 (212)
187 4a1s_A PINS, partner of inscut 98.9 1.4E-09 4.7E-14 112.2 8.2 131 10-142 219-367 (411)
188 3ro2_A PINS homolog, G-protein 98.9 3E-09 1E-13 105.3 9.9 131 10-142 179-327 (338)
189 1elr_A TPR2A-domain of HOP; HO 98.9 5.4E-09 1.9E-13 88.4 10.0 95 46-142 2-103 (131)
190 2kkn_A Uncharacterized protein 98.9 1.5E-09 5.1E-14 99.3 6.8 85 293-413 23-112 (178)
191 1ihg_A Cyclophilin 40; ppiase 98.9 8.6E-09 2.9E-13 105.8 12.7 96 9-104 268-363 (370)
192 4f3v_A ESX-1 secretion system 98.9 1.2E-08 4.2E-13 99.5 12.6 109 11-121 133-246 (282)
193 2kc7_A BFR218_protein; tetratr 98.9 1.7E-08 6E-13 81.8 11.6 68 52-119 4-72 (99)
194 2ooe_A Cleavage stimulation fa 98.9 2E-08 6.9E-13 107.9 15.4 132 9-142 316-449 (530)
195 3q7a_A Farnesyltransferase alp 98.9 1.6E-08 5.4E-13 101.9 13.1 123 9-131 83-216 (349)
196 3q7a_A Farnesyltransferase alp 98.9 1.3E-08 4.3E-13 102.6 12.0 123 10-132 50-175 (349)
197 3n71_A Histone lysine methyltr 98.8 1.3E-08 4.5E-13 107.9 12.8 118 15-132 310-451 (490)
198 3q15_A PSP28, response regulat 98.8 1.2E-08 4.2E-13 104.5 12.1 133 10-142 178-327 (378)
199 1z2w_A Vacuolar protein sortin 98.8 4.5E-08 1.5E-12 90.7 14.5 65 293-366 11-77 (192)
200 3u3w_A Transcriptional activat 98.8 2.4E-08 8.4E-13 98.5 13.3 132 10-143 71-221 (293)
201 1pc2_A Mitochondria fission pr 98.8 3.5E-08 1.2E-12 86.5 12.6 102 29-130 13-119 (152)
202 2kat_A Uncharacterized protein 98.8 1.9E-08 6.5E-13 84.2 10.6 88 8-95 13-102 (115)
203 3ro3_A PINS homolog, G-protein 98.8 2.1E-08 7.1E-13 87.9 11.3 103 12-114 47-161 (164)
204 4f3v_A ESX-1 secretion system 98.8 4.3E-09 1.5E-13 102.7 5.7 126 14-142 102-232 (282)
205 2ooe_A Cleavage stimulation fa 98.8 2.6E-08 9E-13 107.0 12.4 131 10-142 268-415 (530)
206 1su1_A Hypothetical protein YF 98.7 5.5E-09 1.9E-13 98.1 5.0 69 293-366 26-102 (208)
207 3bee_A Putative YFRE protein; 98.7 8E-08 2.7E-12 77.7 11.0 73 44-116 2-77 (93)
208 3gw4_A Uncharacterized protein 98.7 2.9E-08 1E-12 91.3 9.4 117 24-142 2-131 (203)
209 1xm7_A Hypothetical protein AQ 98.7 4.4E-08 1.5E-12 90.9 10.0 137 293-494 2-156 (195)
210 3ib7_A ICC protein; metallopho 98.7 1.6E-07 5.3E-12 94.5 13.7 73 292-364 25-112 (330)
211 1hz4_A MALT regulatory protein 98.7 1.3E-07 4.6E-12 96.1 13.4 126 14-141 53-197 (373)
212 3qww_A SET and MYND domain-con 98.6 1.4E-07 4.9E-12 98.4 12.7 101 21-121 305-426 (433)
213 3qwp_A SET and MYND domain-con 98.6 3.1E-07 1.1E-11 95.9 14.1 108 14-121 287-415 (429)
214 2v5f_A Prolyl 4-hydroxylase su 98.6 5.8E-07 2E-11 74.1 12.6 76 49-124 6-88 (104)
215 1hz4_A MALT regulatory protein 98.6 1.8E-07 6.1E-12 95.2 11.4 129 12-142 12-159 (373)
216 3d03_A Phosphohydrolase; glyce 98.6 6.6E-07 2.3E-11 87.2 14.9 69 293-365 1-84 (274)
217 2v5f_A Prolyl 4-hydroxylase su 98.6 4.1E-07 1.4E-11 75.0 11.4 77 13-89 4-87 (104)
218 1klx_A Cysteine rich protein B 98.6 5.4E-07 1.8E-11 78.5 12.4 88 20-111 31-126 (138)
219 3bee_A Putative YFRE protein; 98.6 2.9E-07 9.8E-12 74.4 9.3 74 10-83 2-78 (93)
220 2xm6_A Protein corresponding t 98.5 1.4E-06 4.6E-11 92.6 16.9 126 11-142 36-175 (490)
221 3e4b_A ALGK; tetratricopeptide 98.5 3.4E-07 1.2E-11 96.5 12.0 123 15-143 177-312 (452)
222 2xm6_A Protein corresponding t 98.5 2E-06 6.8E-11 91.3 16.9 123 12-142 73-211 (490)
223 3n71_A Histone lysine methyltr 98.5 2.5E-07 8.6E-12 98.1 9.7 106 7-112 344-465 (490)
224 1klx_A Cysteine rich protein B 98.5 1.1E-06 3.7E-11 76.5 11.7 106 27-142 8-121 (138)
225 3ly7_A Transcriptional activat 98.4 6.1E-06 2.1E-10 83.0 16.0 127 14-143 196-335 (372)
226 3e4b_A ALGK; tetratricopeptide 98.3 1.3E-06 4.6E-11 91.8 10.6 123 11-142 210-346 (452)
227 3u64_A Protein TP_0956; tetrat 98.3 3E-06 1E-10 81.9 12.0 107 8-114 146-272 (301)
228 1nzn_A CGI-135 protein, fissio 98.3 8.6E-06 3E-10 68.7 12.1 107 24-130 11-122 (126)
229 3rl5_A Metallophosphoesterase 98.3 2.3E-06 7.9E-11 83.9 9.8 64 292-366 59-124 (296)
230 3mv2_B Coatomer subunit epsilo 98.3 8E-06 2.7E-10 80.6 13.4 124 14-140 100-233 (310)
231 2yvt_A Hypothetical protein AQ 98.2 2.9E-07 9.9E-12 89.2 2.5 72 293-366 6-103 (260)
232 1xi4_A Clathrin heavy chain; a 98.2 6E-06 2E-10 95.2 13.4 119 11-144 1102-1247(1630)
233 1b89_A Protein (clathrin heavy 98.2 2.3E-06 7.8E-11 88.4 7.8 118 15-142 123-267 (449)
234 1pc2_A Mitochondria fission pr 98.1 7.5E-06 2.6E-10 71.7 9.0 83 10-92 28-115 (152)
235 1xi4_A Clathrin heavy chain; a 98.1 1.1E-05 3.9E-10 92.9 12.2 120 15-142 1196-1340(1630)
236 2xmo_A LMO2642 protein; phosph 98.1 4.9E-05 1.7E-09 79.6 15.0 73 292-366 39-139 (443)
237 4b4t_Q 26S proteasome regulato 98.0 1.5E-05 5.1E-10 82.4 10.5 126 15-142 5-159 (434)
238 4b4t_Q 26S proteasome regulato 98.0 2.9E-05 9.9E-10 80.2 12.3 129 12-142 53-199 (434)
239 3mv2_B Coatomer subunit epsilo 98.0 3.6E-05 1.2E-09 75.9 11.8 118 11-131 133-270 (310)
240 3qwp_A SET and MYND domain-con 97.8 3.4E-05 1.2E-09 80.4 8.7 89 6-94 321-425 (429)
241 3u64_A Protein TP_0956; tetrat 97.8 0.0002 6.8E-09 69.3 12.2 97 43-141 147-263 (301)
242 3qww_A SET and MYND domain-con 97.8 5.5E-05 1.9E-09 78.8 8.9 78 7-84 333-423 (433)
243 1y8m_A FIS1; mitochondria, unk 97.6 0.0016 5.5E-08 55.7 14.5 86 45-130 36-125 (144)
244 3o48_A Mitochondria fission 1 97.6 0.00069 2.4E-08 57.2 11.6 97 34-131 27-127 (134)
245 3ffl_A Anaphase-promoting comp 97.6 0.00044 1.5E-08 60.8 10.6 111 15-126 21-165 (167)
246 1b89_A Protein (clathrin heavy 97.6 5.7E-05 2E-09 78.0 5.5 113 15-142 62-201 (449)
247 3av0_A DNA double-strand break 97.5 7E-05 2.4E-09 76.9 5.9 73 292-366 20-109 (386)
248 2nxf_A Putative dimetal phosph 97.5 3.2E-05 1.1E-09 76.8 3.0 72 293-365 6-100 (322)
249 2q8u_A Exonuclease, putative; 97.5 3.3E-05 1.1E-09 77.8 2.6 73 291-366 17-110 (336)
250 4e6h_A MRNA 3'-END-processing 97.5 0.0013 4.4E-08 72.4 15.0 121 11-131 375-519 (679)
251 4h7y_A Dual specificity protei 97.5 0.0019 6.5E-08 55.6 12.6 109 10-119 9-131 (161)
252 3ly7_A Transcriptional activat 97.4 0.00057 2E-08 68.7 10.7 77 40-117 269-345 (372)
253 1ii7_A MRE11 nuclease; RAD50, 97.4 9.2E-05 3.1E-09 74.4 4.7 71 293-365 1-88 (333)
254 4e6h_A MRNA 3'-END-processing 97.4 0.00097 3.3E-08 73.3 12.8 81 31-111 326-407 (679)
255 1nzn_A CGI-135 protein, fissio 97.2 0.0011 3.7E-08 55.8 8.2 81 12-92 33-118 (126)
256 3o48_A Mitochondria fission 1 96.9 0.0076 2.6E-07 50.9 10.5 82 12-93 38-123 (134)
257 2uy1_A Cleavage stimulation fa 96.9 0.017 5.9E-07 61.0 16.1 118 11-130 210-368 (493)
258 1y8m_A FIS1; mitochondria, unk 96.8 0.011 3.7E-07 50.5 11.2 82 11-92 36-121 (144)
259 3tho_B Exonuclease, putative; 96.8 0.00028 9.6E-09 72.2 1.2 69 293-364 1-90 (379)
260 3ffl_A Anaphase-promoting comp 96.8 0.0039 1.3E-07 54.9 7.9 81 11-92 60-165 (167)
261 4fbk_A DNA repair and telomere 96.7 0.00098 3.3E-08 69.1 4.2 53 292-345 76-140 (472)
262 4fbw_A DNA repair protein RAD3 96.6 0.0013 4.4E-08 67.5 4.8 55 290-345 11-77 (417)
263 3t1i_A Double-strand break rep 96.6 0.00081 2.8E-08 69.4 3.0 55 291-346 31-97 (431)
264 2ff4_A Probable regulatory pro 96.4 0.045 1.6E-06 55.8 14.7 99 12-110 113-233 (388)
265 1ute_A Protein (II purple acid 96.4 0.0013 4.3E-08 64.8 2.7 73 292-365 6-95 (313)
266 2qfp_A Purple acid phosphatase 96.2 0.0043 1.5E-07 64.3 5.5 71 293-366 120-198 (424)
267 2uy1_A Cleavage stimulation fa 96.0 0.15 5E-06 53.8 16.3 115 13-132 285-400 (493)
268 1xzw_A Purple acid phosphatase 95.7 0.0076 2.6E-07 62.5 5.0 71 293-366 127-205 (426)
269 1ya0_A SMG-7 transcript varian 95.2 0.1 3.6E-06 54.7 11.3 80 50-129 154-233 (497)
270 4gns_B Protein CSD3, chitin bi 95.1 0.049 1.7E-06 60.0 8.8 59 50-108 339-397 (754)
271 4g26_A Pentatricopeptide repea 95.0 0.35 1.2E-05 51.0 15.0 97 15-111 106-204 (501)
272 3kae_A CDC27, possible protein 95.0 0.54 1.8E-05 41.2 13.0 99 16-119 35-151 (242)
273 1zbp_A Hypothetical protein VP 94.8 0.25 8.7E-06 46.9 11.8 62 22-83 5-66 (273)
274 3tgh_A Glideosome-associated p 94.5 0.0097 3.3E-07 59.6 1.4 69 293-365 4-86 (342)
275 4gns_B Protein CSD3, chitin bi 94.4 0.12 4E-06 57.0 9.6 61 14-74 337-397 (754)
276 1ya0_A SMG-7 transcript varian 94.4 0.17 6E-06 53.0 10.6 80 15-94 153-232 (497)
277 4g26_A Pentatricopeptide repea 94.4 1.2 4.2E-05 46.8 17.3 113 28-142 84-199 (501)
278 4h7y_A Dual specificity protei 94.3 0.23 7.8E-06 42.8 9.2 98 42-142 7-118 (161)
279 3qfk_A Uncharacterized protein 93.9 0.021 7.2E-07 60.8 2.4 67 293-364 20-112 (527)
280 1zbp_A Hypothetical protein VP 92.9 0.45 1.5E-05 45.2 9.5 65 57-121 6-70 (273)
281 1hp1_A 5'-nucleotidase; metall 92.6 0.031 1.1E-06 59.4 1.2 66 294-364 10-94 (516)
282 4h2g_A 5'-nucleotidase; dimer, 92.3 0.06 2.1E-06 57.5 3.0 66 294-364 27-117 (546)
283 2ff4_A Probable regulatory pro 92.2 0.5 1.7E-05 48.0 9.7 62 15-76 172-233 (388)
284 3txn_A 26S proteasome regulato 91.8 1.3 4.6E-05 44.8 12.0 94 19-112 104-211 (394)
285 2z1a_A 5'-nucleotidase; metal- 91.7 0.1 3.4E-06 55.9 3.9 67 294-365 31-119 (552)
286 4b4t_R RPN7, 26S proteasome re 91.1 1.7 5.7E-05 44.7 12.3 100 15-114 132-240 (429)
287 3mkq_A Coatomer beta'-subunit; 91.0 1.6 5.5E-05 48.2 13.1 48 22-74 660-707 (814)
288 3ztv_A NAD nucleotidase, NADN; 90.1 0.15 5.2E-06 54.8 3.4 66 294-364 14-105 (579)
289 1t71_A Phosphatase, conserved 90.0 0.11 3.9E-06 50.0 2.1 70 292-366 4-76 (281)
290 3spa_A Mtrpol, DNA-directed RN 89.0 6.3 0.00022 44.7 15.2 100 12-112 125-231 (1134)
291 4b4t_P 26S proteasome regulato 88.6 7 0.00024 40.2 14.7 100 12-111 135-247 (445)
292 3kae_A CDC27, possible protein 88.5 12 0.00042 32.8 14.5 69 12-80 60-146 (242)
293 3mkq_A Coatomer beta'-subunit; 87.9 1.9 6.3E-05 47.7 10.4 98 18-131 633-738 (814)
294 3mkq_B Coatomer subunit alpha; 87.5 4.6 0.00016 35.7 10.6 47 23-74 14-60 (177)
295 3ive_A Nucleotidase; structura 87.3 0.22 7.6E-06 52.6 2.3 65 294-364 8-96 (509)
296 3jyf_A 2',3'-cyclic nucleotide 86.8 0.3 1E-05 48.7 2.8 67 294-365 10-105 (339)
297 3gve_A YFKN protein; alpha-bet 86.5 0.37 1.3E-05 48.0 3.3 67 294-365 13-112 (341)
298 3txn_A 26S proteasome regulato 86.1 9.4 0.00032 38.5 13.4 99 14-112 19-169 (394)
299 2wdc_A SOXB, sulfur oxidation 84.4 0.26 9E-06 52.7 1.1 36 323-364 126-166 (562)
300 3c9f_A 5'-nucleotidase; 2',3'- 84.3 0.4 1.4E-05 51.2 2.4 69 293-366 16-108 (557)
301 4b4t_S RPN3, 26S proteasome re 83.7 1 3.4E-05 47.1 5.0 102 13-116 180-304 (523)
302 3mkq_B Coatomer subunit alpha; 80.4 9.6 0.00033 33.7 9.5 83 13-108 33-115 (177)
303 4fhn_B Nucleoporin NUP120; pro 80.4 6.2 0.00021 45.9 10.7 93 19-115 817-932 (1139)
304 2w2u_A Hypothetical P60 katani 78.4 4.6 0.00016 30.9 5.9 39 5-43 10-48 (83)
305 4fhn_B Nucleoporin NUP120; pro 78.1 4.2 0.00014 47.4 8.3 93 16-108 844-964 (1139)
306 2z06_A Putative uncharacterize 75.1 2.3 8E-05 40.0 4.1 67 293-366 1-70 (252)
307 1t70_A Phosphatase; crystal, X 74.8 2.9 9.8E-05 39.5 4.7 66 293-365 1-69 (255)
308 3re2_A Predicted protein; meni 74.4 66 0.0022 31.6 13.9 82 47-128 254-348 (472)
309 4h1s_A 5'-nucleotidase; hydrol 71.8 2.5 8.6E-05 44.7 3.9 65 295-364 6-95 (530)
310 4b4t_R RPN7, 26S proteasome re 71.6 6.5 0.00022 40.2 6.9 65 47-111 130-197 (429)
311 2yeq_A Apased, PHOD, alkaline 70.6 7 0.00024 41.2 7.0 34 293-331 117-153 (527)
312 1qsa_A Protein (soluble lytic 69.1 9 0.00031 41.2 7.5 53 58-110 295-347 (618)
313 4gq2_M Nucleoporin NUP120; bet 67.0 32 0.0011 39.0 12.0 94 20-117 816-933 (950)
314 2crb_A Nuclear receptor bindin 66.6 11 0.00037 29.2 5.3 33 9-41 10-42 (97)
315 3lpz_A GET4 (YOR164C homolog); 66.4 50 0.0017 32.3 11.5 25 15-39 36-60 (336)
316 4b4t_S RPN3, 26S proteasome re 65.3 43 0.0015 34.9 11.4 68 12-81 229-303 (523)
317 2v6y_A AAA family ATPase, P60 64.8 32 0.0011 26.1 7.8 32 12-43 9-40 (83)
318 2wpv_A GET4, UPF0363 protein Y 64.8 46 0.0016 32.2 11.0 26 81-106 133-158 (312)
319 3ax2_A Mitochondrial import re 64.5 20 0.00069 26.5 6.3 38 86-123 21-58 (73)
320 4a5x_A MITD1, MIT domain-conta 63.4 10 0.00035 29.1 4.8 33 11-43 13-45 (86)
321 1wy6_A Hypothetical protein ST 63.2 29 0.00098 29.4 7.7 80 28-112 75-155 (172)
322 3ax2_A Mitochondrial import re 59.3 22 0.00075 26.3 5.7 32 19-50 22-53 (73)
323 1wy6_A Hypothetical protein ST 56.0 40 0.0014 28.5 7.3 111 18-133 11-142 (172)
324 3u84_A Menin; MLL, JUND, ledgf 55.9 1.7E+02 0.0058 29.3 14.5 61 67-127 298-369 (550)
325 3t5x_A PCI domain-containing p 53.9 26 0.00088 31.6 6.7 39 10-48 10-48 (203)
326 2v6x_A Vacuolar protein sortin 53.8 21 0.00072 27.1 5.2 34 10-43 9-42 (85)
327 2cfu_A SDSA1; SDS-hydrolase, l 53.6 25 0.00087 38.0 7.7 53 47-99 448-500 (658)
328 1wfd_A Hypothetical protein 15 53.2 26 0.0009 27.2 5.7 33 11-43 12-44 (93)
329 1qsa_A Protein (soluble lytic 52.1 83 0.0028 33.6 11.3 115 17-132 217-335 (618)
330 3spa_A Mtrpol, DNA-directed RN 51.3 1.1E+02 0.0038 34.8 12.3 80 50-131 129-215 (1134)
331 3mv2_A Coatomer subunit alpha; 51.2 96 0.0033 30.0 10.4 106 12-118 112-243 (325)
332 2ijq_A Hypothetical protein; s 49.2 98 0.0033 26.7 9.2 20 91-110 84-103 (161)
333 2cpt_A SKD1 protein, vacuolar 48.8 24 0.00083 28.7 5.0 27 13-39 17-43 (117)
334 3t5v_B Nuclear mRNA export pro 48.3 33 0.0011 35.2 7.1 88 28-115 140-254 (455)
335 2crb_A Nuclear receptor bindin 48.0 28 0.00097 26.9 4.8 24 85-108 18-41 (97)
336 2rpa_A Katanin P60 ATPase-cont 46.0 25 0.00084 26.4 4.2 32 12-43 10-41 (78)
337 4gq4_A Menin; tumor suppressor 45.9 1.4E+02 0.0048 30.0 10.6 64 66-129 282-356 (489)
338 3t5x_A PCI domain-containing p 45.9 41 0.0014 30.2 6.7 35 82-116 14-48 (203)
339 2vkj_A TM1634; membrane protei 45.3 52 0.0018 25.2 5.8 33 12-44 51-83 (106)
340 1om2_A Protein (mitochondrial 44.7 32 0.0011 26.8 4.8 34 86-119 24-57 (95)
341 1om2_A Protein (mitochondrial 41.4 32 0.0011 26.8 4.4 30 19-48 25-54 (95)
342 2cfu_A SDSA1; SDS-hydrolase, l 41.2 54 0.0019 35.4 7.8 51 82-132 449-499 (658)
343 2ijq_A Hypothetical protein; s 40.5 1.1E+02 0.0037 26.4 8.1 33 15-47 33-65 (161)
344 2uwj_G Type III export protein 38.8 1.4E+02 0.0049 23.5 8.5 86 15-106 7-92 (115)
345 2p58_C Putative type III secre 38.6 1.5E+02 0.005 23.5 9.4 85 15-105 8-92 (116)
346 4gq2_M Nucleoporin NUP120; bet 38.1 69 0.0024 36.2 8.4 68 16-83 842-933 (950)
347 1tke_A Threonyl-tRNA synthetas 33.1 33 0.0011 31.4 3.9 107 262-373 112-221 (224)
348 2w2u_A Hypothetical P60 katani 28.5 70 0.0024 24.2 4.3 32 64-110 16-47 (83)
349 3re2_A Predicted protein; meni 28.1 1.4E+02 0.0048 29.3 7.3 45 33-77 276-325 (472)
350 3flo_A DNA polymerase alpha su 27.6 92 0.0031 31.8 6.4 63 304-366 164-248 (460)
351 3mkr_B Coatomer subunit alpha; 27.1 4.3E+02 0.015 25.4 14.8 104 11-115 99-231 (320)
352 2v6y_A AAA family ATPase, P60 26.8 77 0.0026 23.9 4.3 52 65-131 9-67 (83)
353 2rpa_A Katanin P60 ATPase-cont 25.9 60 0.002 24.3 3.4 27 85-111 15-41 (78)
354 4b4t_P 26S proteasome regulato 25.7 5.2E+02 0.018 25.9 18.4 61 49-109 138-204 (445)
355 3esl_A Checkpoint serine/threo 25.7 3.6E+02 0.012 24.0 9.7 70 8-78 74-145 (202)
356 2cwy_A Hypothetical protein TT 22.3 2.1E+02 0.0071 22.0 6.2 27 19-45 6-32 (94)
357 2yhe_A SEC-alkyl sulfatase; hy 27.3 19 0.00066 39.0 0.0 52 50-101 463-514 (668)
358 2dl1_A Spartin; SPG20, MIT, st 21.2 90 0.0031 25.2 3.8 64 30-101 19-97 (116)
359 3myv_A SUSD superfamily protei 20.3 2.1E+02 0.0073 28.9 7.6 47 64-110 164-218 (454)
No 1
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=100.00 E-value=5.6e-90 Score=738.73 Aligned_cols=474 Identities=57% Similarity=0.982 Sum_probs=435.5
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.+..+.++..+|..++..|+|++|++.|++|++++|+++.++.++|.+|.++|++++|+..|++|++++|+++.+++++|
T Consensus 2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 81 (477)
T 1wao_1 2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 81 (477)
T ss_dssp CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCCCccccccccccccccCCCCCccchhH
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIGMSPSSSFVSTQ 169 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~ 169 (556)
.+|..+|++++|++.|+++++++|++..++..++.+.......++++|++.+++.... ....
T Consensus 82 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~----------------- 143 (477)
T 1wao_1 82 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV-VDSL----------------- 143 (477)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCST-TTCC-----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh-Hhhh-----------------
Confidence 9999999999999999999999999999999999985555555578887776532110 0001
Q ss_pred HHHHHhhhhhhhHhhhcccHHHHHHHHhHHHHHHHHHhhhcccCCCCCCccccccccccccCCCCCCcccCCCCCCHHHH
Q 008730 170 AAILAATATVVVAVVVMVWPAVATTVAGMVVAVLMILGAYWWGSCSGSDVFTKSRKLELEVEPQYSGARIEGDVITLDFV 249 (556)
Q Consensus 170 ~~~~~~~~~~~~a~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~it~~~i 249 (556)
....+.+.+++.++.+....++...+
T Consensus 144 ------------------------------------------------------~~~al~~~~~~~~~~~~~~~itl~~l 169 (477)
T 1wao_1 144 ------------------------------------------------------DIESMTIEDEYSGPKLEDGKVTISFM 169 (477)
T ss_dssp ------------------------------------------------------TTSSCCCCTTCCSCCCGGGSCCHHHH
T ss_pred ------------------------------------------------------hhhhccccccccccccccccccHHHH
Confidence 11224567778888887655899999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecc
Q 008730 250 KKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 329 (556)
Q Consensus 250 ~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD 329 (556)
+++++.+++++.+++.++..+|.++.+++.++|++++++.|..++++|||||||++++|.++|+..|+++..++|||+||
T Consensus 170 ~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~~~~~~~~~~~~~~~vigDiHG~~~~l~~~l~~~~~~~~~~~~v~lGD 249 (477)
T 1wao_1 170 KELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGD 249 (477)
T ss_dssp HHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCSSCEEEEECBCTTCHHHHHHHHHHHCCCBTTBCEEEESC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCCCeEEeecCCCcceEEEeCCCCCHHHHHHHHHHcCCCCCcCeEEEecc
Confidence 99999999999999999999999999999999999999999899999999999999999999999999877778999999
Q ss_pred cccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEE
Q 008730 330 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVV 409 (556)
Q Consensus 330 ~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~v 409 (556)
|||||++|+||+.+|+++|+.+|.+|++||||||.+.++..|||.+++.++|+..+++.+.++|++||++++++++++||
T Consensus 250 ~vdrG~~s~e~~~~l~~l~~~~~~~~~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v 329 (477)
T 1wao_1 250 FVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIM 329 (477)
T ss_dssp CSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHHHHHHHHSCTTHHHHHHHHHTTSCSEEEETTTEEEC
T ss_pred ccCCCcchHHHHHHHHHHHhhCCCceEeecCCccHHHHhhhcChHHHHHHHhhHHHHHHHHHHhccCCcEEEEcCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccc
Q 008730 410 HGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKD 489 (556)
Q Consensus 410 HgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~ 489 (556)
|||+++|...++++|+.+.|+.+++..+.++|+|||||....+|.++.||.|+.||++++++||+++|+++||||||+++
T Consensus 330 Hgg~~~~~~~~l~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~ 409 (477)
T 1wao_1 330 HGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKA 409 (477)
T ss_dssp SSCCCSSSCCCHHHHHTCCCSSCCCSSSHHHHHHHCEECSSSSCEECTTSSSEEECHHHHHHHHHHTTCCEEEECCSCCT
T ss_pred CCCCCccccCCHHHHHhccCCCCCchhhhhhhhccCCCCccCCcCcCCCCCceeECHHHHHHHHHHcCCeEEEECCCCCc
Confidence 99997788889999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCcccchhhhh--hhc
Q 008730 490 EGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFL--RMF 555 (556)
Q Consensus 490 ~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 555 (556)
+||+++++|+|||||||||||+.++|+||||.|.+++++++|++|+++|+|.++||+|+++++ +||
T Consensus 410 ~g~~~~~~~~~~tvfsa~~y~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (477)
T 1wao_1 410 EGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPMAYANTLLQLGMM 477 (477)
T ss_dssp EEEEEEGGGTEEEEBCCTTTTSSSCCEEEEEEEETTEEEEEEEEECCCCCCSCCTTCSSCHHHHTTCC
T ss_pred CCeEEecCCeEEEEeCCcccccCCCccEEEEEEECCCCeEEEEEEeCCCCCCCChhhhhhhhhhhccC
Confidence 999999999999999999999999999999999778899999999999999999999999988 765
No 2
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=100.00 E-value=4.5e-84 Score=640.33 Aligned_cols=315 Identities=60% Similarity=1.078 Sum_probs=306.7
Q ss_pred CCCcccCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHH
Q 008730 234 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE 313 (556)
Q Consensus 234 ~~g~~l~~~~it~~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~ 313 (556)
|+||+|++..+|.+++++|++++++++.++++++..||.++.++|++||++++++.|.+++++||||||||+++|.++|+
T Consensus 1 y~gp~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~l~~p~~~ri~viGDIHG~~~~L~~ll~ 80 (315)
T 3h63_A 1 YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFE 80 (315)
T ss_dssp CCSCCCBTTBCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCTTCEEEEECCCTTCHHHHHHHHH
T ss_pred CCCCcCCCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEEEecCCCceEEEEecCCCCHHHHHHHHH
Confidence 78999998669999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHh
Q 008730 314 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF 393 (556)
Q Consensus 314 ~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 393 (556)
..++++.+++|||||||||||++|+||+.+|+++|..+|++|++||||||.+.++..|||.+||.++|+..+|+.+.++|
T Consensus 81 ~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~ygf~~e~~~k~~~~l~~~~~~~f 160 (315)
T 3h63_A 81 LNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVF 160 (315)
T ss_dssp HHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhCCCCCCCEEEEeCCccCCCcChHHHHHHHHHhhhhcCCcEEEEecCcccccccccccccHHHHHHhhhHHHHHHHHHH
Confidence 99998877779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHH
Q 008730 394 CCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFL 473 (556)
Q Consensus 394 ~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl 473 (556)
++||++++++++++|||||+++|...++++|++++|+.+++.+++++|+|||||.+..+|.+++||+|+.||++++++||
T Consensus 161 ~~LPla~ii~~~il~vHGGl~sp~~~~l~~i~~i~R~~~~p~~g~~~dllWsDP~~~~g~~~s~RG~g~~fg~~~~~~fl 240 (315)
T 3h63_A 161 EWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFL 240 (315)
T ss_dssp TTSCSEEEETTTEEECSSCCCSSTTCCHHHHHHCCCSSCCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHH
T ss_pred hcCCcEEEEcCCEEEeCCCCCCcccCCHHHHHhCcccccccccchhhhheecCCCCCCCcCcCCCCceEEECHHHHHHHH
Confidence 99999999999999999999888899999999999999999999999999999998889999999999999999999999
Q ss_pred HHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCcccch
Q 008730 474 QDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYA 548 (556)
Q Consensus 474 ~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (556)
++||+++||||||++++||+++++++|||||||||||+.++|+||+|.|.+++++++|++|+++|+|.++||+||
T Consensus 241 ~~n~l~~iiR~Hq~~~~Gy~~~~~~~~iTvfSapnY~~~~~N~~a~~~~~~~~~~~~~~~f~~~~~~~~~p~~~~ 315 (315)
T 3h63_A 241 EENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPMAYA 315 (315)
T ss_dssp HHHTCSEEEECCSCCTTSEEEEGGGTEEEECCCTTGGGTSCCCEEEEEEETTEEEEEEEEECCCCCCSCCTTTTC
T ss_pred HHcCCcEEEEeceeecCCeEEecCCeEEEEECCcccCCCCCccEEEEEEECCCCeEeeEEEecCCCCCCCCcCCC
Confidence 999999999999999999999999999999999999999999999999976789999999999999999999996
No 3
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-84 Score=645.69 Aligned_cols=320 Identities=48% Similarity=0.862 Sum_probs=294.4
Q ss_pred CCCCCcccCCCCCCHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCC--CCCcceEeccCCCCHHHH
Q 008730 232 PQYSGARIEGDVITLDFVKKMM-DDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIP--DGKHFTVCGDVHGQFYDL 308 (556)
Q Consensus 232 ~~~~g~~l~~~~it~~~i~~~i-~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~i~vigDiHG~~~~l 308 (556)
.+|.||+|++ +|.+++++|+ +++++++.++++++..||.++.++|++||++++++.| .+++++||||||||+++|
T Consensus 2 ~~y~g~~~~~--~~~~~~~~~i~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~~~~l~~p~~~~~ri~viGDIHG~~~~L 79 (335)
T 3icf_A 2 NAFKGAKIKN--MSQEFISKMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTPDVKISVCGDTHGQFYDV 79 (335)
T ss_dssp ------------CCHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHHHHTSCSEEEECCSSSTTCEEEEECCCTTCHHHH
T ss_pred CCCCCCccCC--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEEecCCcccCceEEEEecCCCCHHHH
Confidence 4799999987 6999999999 9999999999999999999999999999999999999 889999999999999999
Q ss_pred HHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHH
Q 008730 309 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVEL 388 (556)
Q Consensus 309 ~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~ 388 (556)
.++|+..|+++.+++|||||||||||++|+||+.+|+++|+.+|++|++||||||.+.++..|||.+||.++|+..+|+.
T Consensus 80 ~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygf~~e~~~k~~~~l~~~ 159 (335)
T 3icf_A 80 LNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESDNMNKIYGFEDECKYKYSQRIFNM 159 (335)
T ss_dssp HHHHHHHCCCBTTEEEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHH
T ss_pred HHHHHHcCCCCCCcEEEEeCCccCCCcChHHHHHHHHHHhhhCCCcEEEecCchhhhhhhhccccchHhHhhccHHHHHH
Confidence 99999999987777799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHH
Q 008730 389 FAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADV 468 (556)
Q Consensus 389 ~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~ 468 (556)
+.+||++||++++++++++|||||+++|...++++|+.++|+.+++.+++++|+|||||.+..+|.+++||+|+.||+++
T Consensus 160 ~~~~f~~LPlaaii~~~il~vHGGl~sp~~~~ld~i~~i~R~~~~p~~g~~~dlLWSDP~~~~g~~~s~RG~g~~FG~~~ 239 (335)
T 3icf_A 160 FAQSFESLPLATLINNDYLVMHGGLPSDPSATLSDFKNIDRFAQPPRDGAFMELLWADPQEANGMGPSQRGLGHAFGPDI 239 (335)
T ss_dssp HHHHHTTSCSEEEETTTEEECSSCCCSCTTCCHHHHHTCCCSSCCCSSSHHHHHHHCEECSSSSEEECCCC--EEECHHH
T ss_pred HHHHHhhcceeEEEcCcEEEecCCcCCCccCCHHHHHhCccccccccccchhhhhccCCCCcCCcccCCCCCceeeCHHH
Confidence 99999999999999999999999998889999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHCCCCEEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecC-----------CCceeEEEEecC
Q 008730 469 TKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAP-----------TLKPNIVTFAAV 537 (556)
Q Consensus 469 ~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~-----------~~~~~~~~~~~~ 537 (556)
+++||++|++++||||||++++||+++++++|||||||||||+.++|+||||.| ++ +++++|++|+++
T Consensus 240 ~~~fl~~n~l~~IiR~Hq~~~~Gy~~~~~~~liTvfSapnYc~~~~N~~a~~~i-~~~~~~~~~~~~~~~~~~~~~f~~~ 318 (335)
T 3icf_A 240 TDRFLRNNKLRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDSQGNLGGVIHV-VPGHGILQAGRNDDQNLIIETFEAV 318 (335)
T ss_dssp HHHHHHHTTCSEEEECSSCCTEEEEEEGGGTEEEECCCTTGGGTSCCEEEEEEE-CTTCCCCBTTTBCCTTEEEEEECCC
T ss_pred HHHHHHHCCCeEEEEcCceecCeEEEecCCcEEEEECCcccCCCCCCceEEEEE-ecccccccccccccCceeEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999 55 889999999999
Q ss_pred CCCCCCcccchhhhhhh
Q 008730 538 PHPDVKPMAYANNFLRM 554 (556)
Q Consensus 538 ~~~~~~~~~~~~~~~~~ 554 (556)
|+|.++||+||+++++|
T Consensus 319 ~~~~~~p~~y~~~~~~~ 335 (335)
T 3icf_A 319 EHPDIKPMAYSNGGFGL 335 (335)
T ss_dssp CCCSCCTTTTC------
T ss_pred CCCCCCchhhcccccCC
Confidence 99999999999998775
No 4
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=100.00 E-value=5.2e-75 Score=580.62 Aligned_cols=290 Identities=41% Similarity=0.746 Sum_probs=274.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeec
Q 008730 249 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 328 (556)
Q Consensus 249 i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflG 328 (556)
++.+++++++++.++++++..||.++.++|++||++++++.| ++||||||||+++|.++|+..+.++. ++|||||
T Consensus 30 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~ll~~~~p----i~ViGDIHG~~~dL~~ll~~~g~~~~-~~~vfLG 104 (357)
T 3ll8_A 30 VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPAN-TRYLFLG 104 (357)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTT-CCEEECS
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCCCeEEeccc----ceeeccCCCCHHHHHHHHHhcCCCCC-cEEEECC
Confidence 778999999999999999999999999999999999999876 99999999999999999999988764 5699999
Q ss_pred ccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEEE
Q 008730 329 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV 408 (556)
Q Consensus 329 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~ 408 (556)
||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+||.++|+..+|+.+.+||++||++++++++++|
T Consensus 105 D~VDRG~~s~Evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygF~~E~~~ky~~~l~~~~~~~f~~LPlaaii~~~il~ 184 (357)
T 3ll8_A 105 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC 184 (357)
T ss_dssp CCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHHHHHHHHHHHHTSCSEEEETTTEEE
T ss_pred CccCCCcChHHHHHHHHHhhhhcCCcEEEEeCchhhhhhhcccCchhhhhhccchhHHHHHHHHHHhCCcceEEcccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCC-------CC-cCCCCCccccCHHHHHHHHHHCCCCE
Q 008730 409 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG-------RG-PSKRGVGLSFGADVTKRFLQDNSLDL 480 (556)
Q Consensus 409 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~-------~~-~~~rg~g~~fg~~~~~~fl~~~~~~~ 480 (556)
||||+ +|...++++|++++|+.+++..+.++|+|||||.+..+ |. +++||+|+.||++++++||++||+++
T Consensus 185 vHGGl-sp~l~~ld~I~~i~R~~e~p~~g~~~DlLWSDP~~~~~~~~~~~~~~~~s~RG~g~~FG~~~~~~Fl~~n~l~~ 263 (357)
T 3ll8_A 185 VHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS 263 (357)
T ss_dssp CSSCC-CTTCCSHHHHHTCCCSSCCCSSSHHHHHHHCEECTTTTSCSCCCSEEECTTTTSSEEECHHHHHHHHHHTTCSE
T ss_pred EecCc-CcccCCHHHHhhccccccCCccCchhHhhccCccccccccccccccccCCCCCCceEEChHHHHHHHHHCCCeE
Confidence 99999 99999999999999999999999999999999987644 33 57899999999999999999999999
Q ss_pred EEeeccccccCceEecCC------eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCccc
Q 008730 481 VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMA 546 (556)
Q Consensus 481 iir~H~~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (556)
||||||++++||++++++ +||||||||||||.++|+||||.| +++. ..|.||+++|||.++|--
T Consensus 264 IiRaHq~~~~Gy~~~~~~~~~g~~~liTvFSApnYc~~~~N~~a~l~~-~~~~-~~~~~f~~~~hp~~~p~~ 333 (357)
T 3ll8_A 264 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKY-ENNV-MNIRQFNCSPHPYWLPNF 333 (357)
T ss_dssp EEECCSCCTTSEEECCBCTTTSSBSEEEECCCTTGGGTSCCCEEEEEE-ETTE-EEEEEECCCCCCCCCGGG
T ss_pred EEEeccccccceEEecCCcCCCCCcEEEEECCCccCCCCCccEEEEEE-ECCc-ceEEEecCCCCCCcCCCc
Confidence 999999999999999886 799999999999999999999999 4543 689999999999999854
No 5
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=100.00 E-value=4.2e-74 Score=564.97 Aligned_cols=282 Identities=40% Similarity=0.809 Sum_probs=268.1
Q ss_pred HHHHHHHhhcCC--------CCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCC
Q 008730 249 VKKMMDDFKNQK--------CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE 320 (556)
Q Consensus 249 i~~~i~~~~~~~--------~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~ 320 (556)
++++|+++.+.+ .+++.++..||.++.++|.+||++++++.| ++|||||||++++|.++|+..|+++.
T Consensus 8 ~d~~i~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~ll~~~~~----i~viGDIHG~~~~L~~ll~~~g~~~~ 83 (299)
T 3e7a_A 8 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE 83 (299)
T ss_dssp HHHHHHHHHTTTTSCTTCCCCCCHHHHHHHHHHHHHHHHHSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCSTTS
T ss_pred HHHHHHHHHhccccCCCcccCCCHHHHHHHHHHHHHHHHhCCCeeecCCC----EEEEecCCCCHHHHHHHHHHhCCCCC
Confidence 667777764432 589999999999999999999999999876 99999999999999999999999865
Q ss_pred CCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhccccccc
Q 008730 321 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH 400 (556)
Q Consensus 321 ~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~ 400 (556)
+.|||||||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+||.++|+..+|+.+.++|++||+++
T Consensus 84 -~~~vfLGD~VDrG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~i~~~ygF~~e~~~ky~~~l~~~~~~~f~~LPlaa 162 (299)
T 3e7a_A 84 -SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAA 162 (299)
T ss_dssp -SCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHHTTCCCEE
T ss_pred -ccEEeCCcccCCCCCcHHHHHHHHHHHhhCCCcEEEEecCchhhhhcccccchHHHHHHhhHHHHHHHHHHHhhCCceE
Confidence 4599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCC-CCCCCcCCCCCccccCHHHHHHHHHHCCCC
Q 008730 401 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP-LPGRGPSKRGVGLSFGADVTKRFLQDNSLD 479 (556)
Q Consensus 401 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~-~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~ 479 (556)
++++++||||||+ +|...++++|++++|+.+++..++++|+|||||.. ..+|.+++||+|+.||++++++||++||++
T Consensus 163 ii~~~il~vHGGl-sp~~~~l~~i~~i~R~~~~p~~~~~~dllWsDP~~~~~~~~~~~RG~~~~fG~~~~~~fl~~n~l~ 241 (299)
T 3e7a_A 163 IVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLD 241 (299)
T ss_dssp EETTTEEEESSCC-CTTCCCTHHHHTCCSSCCCCSSSHHHHHHHCEECTTCSSEEECTTSSSEEECHHHHHHHHHHHTCS
T ss_pred EECCeEEEEcCcc-CcccCCHHHHHhccCCCcCCcchhhhhhhcCCccccccCcccCCCCcceeeCHHHHHHHHHHCCCe
Confidence 9999999999999 99999999999999999999999999999999986 468999999999999999999999999999
Q ss_pred EEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecC
Q 008730 480 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAV 537 (556)
Q Consensus 480 ~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~ 537 (556)
+||||||++++||+++++++|||||||||||+.++|+||+|.| ++++.++|++|++.
T Consensus 242 ~IiR~Hq~v~~Gy~~~~~~~~iTvfSapnY~~~~~N~~a~l~~-~~~~~~~~~~~~~~ 298 (299)
T 3e7a_A 242 LICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSV-DETLMCSFQILKPA 298 (299)
T ss_dssp EEEECCSCCTTSEEEETTTTEEEEBCCSSGGGTCCCCEEEEEE-CTTCCEEEEEECCC
T ss_pred EEEEcCeeeecceEEecCCeEEEEECCcccCCCCCccEEEEEE-CCCCcEEEEEecCC
Confidence 9999999999999999999999999999999999999999999 99999999999874
No 6
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=100.00 E-value=5.8e-71 Score=570.81 Aligned_cols=291 Identities=41% Similarity=0.726 Sum_probs=274.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeee
Q 008730 248 FVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN 327 (556)
Q Consensus 248 ~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vfl 327 (556)
.++.+++++++++.+++.++..||.++.++|.+||++++++.| ++||||||||+++|.++|+..+.++ .++||||
T Consensus 42 ~~d~l~~~~~~~~~l~~~~i~~L~~~a~~il~~Ep~ll~l~~p----I~VIGDIHGq~~dL~~LL~~~g~p~-~d~yVFL 116 (521)
T 1aui_A 42 RVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPA-NTRYLFL 116 (521)
T ss_dssp CHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECCCTTCHHHHHHHHHHHCCTT-TCCEEEC
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCCCeEeeccc----eeeccCCCCCHHHHHHHHHhcCCCC-cceEEEc
Confidence 3778999999999999999999999999999999999999865 9999999999999999999888765 5679999
Q ss_pred cccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccccCCeEE
Q 008730 328 GDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF 407 (556)
Q Consensus 328 GD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~ 407 (556)
|||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||..+|..+|+..+|+.+.+||++||++++++++++
T Consensus 117 GDyVDRGp~S~Evl~lL~aLk~~~P~~v~lLRGNHE~~~l~~~ygF~~E~~~ky~~~l~~~~~~~f~~LPlaaii~~~il 196 (521)
T 1aui_A 117 GDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFL 196 (521)
T ss_dssp SCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHHHHHHHHHHHTTSCCEEEETTTEE
T ss_pred CCcCCCCCCHHHHHHHHHHHhhhCCCeEEEecCCccHHHHHHHhCccHHHHHhhhhHHHHHHHHHHHhCCceEEecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCC-------CCCcC-CCCCccccCHHHHHHHHHHCCCC
Q 008730 408 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLP-------GRGPS-KRGVGLSFGADVTKRFLQDNSLD 479 (556)
Q Consensus 408 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~-------~~~~~-~rg~g~~fg~~~~~~fl~~~~~~ 479 (556)
|||||+ +|...++++|+.++|+.+++..+.++|+|||||.... +|.++ .||+|+.||++++++||++||++
T Consensus 197 ~VHGGl-sP~~~sld~I~~I~R~~e~p~~g~~~DLLWSDP~~~~g~~~~~~~f~~ns~RG~g~~FG~d~v~~FL~~n~l~ 275 (521)
T 1aui_A 197 CVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLL 275 (521)
T ss_dssp EESSCC-CTTCCSHHHHHHSCCSSSCCSSSHHHHHHHCEECTTTTSCSSCCCEEECTTTTSSEEECHHHHHHHHHHTTCS
T ss_pred EECCCc-CcccCCHHHhhhccCCcCCCccchhhhheecCccccccccccCcceecccCCCcccccCHHHHHHHHHHcCCc
Confidence 999999 9999999999999999999999999999999998753 35444 79999999999999999999999
Q ss_pred EEEeeccccccCceEecCC------eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCCCCccc
Q 008730 480 LVVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMA 546 (556)
Q Consensus 480 ~iir~H~~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (556)
+||||||++++||++++++ +|||||||||||+.++|+||||.| +++ .++|.+|+++|+|.++|..
T Consensus 276 lIIRaHq~v~~Gy~~~~~~~~~g~~kliTVFSApNYc~~~~N~gAvl~i-~~~-~~~~~~f~~~~~p~~~P~~ 346 (521)
T 1aui_A 276 SILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKY-ENN-VMNIRQFNCSPHPYWLPNF 346 (521)
T ss_dssp EEEECCSCCTTSEEECCBCTTTSSBSEEEECCCSSGGGTSCCCEEEEEE-ETT-EEEEEEECCCCCCCCCGGG
T ss_pred EEEEccchhccceeeecCCcCCCCCeEEEEeCCcccCCCCCceEEEEEE-eCC-cceEEEecCCCCCCcCccc
Confidence 9999999999999999987 599999999999999999999999 555 5899999999999999954
No 7
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=100.00 E-value=3.3e-70 Score=544.05 Aligned_cols=291 Identities=38% Similarity=0.707 Sum_probs=275.8
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCC
Q 008730 244 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENP 323 (556)
Q Consensus 244 it~~~i~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~ 323 (556)
.+...++++++++++++.+++.++..||.+|.++|.+||++++++.| ++||||||||+++|.++|+..+.++. +.
T Consensus 5 ~~~~~~~~~i~~~~~~~~l~~~~~~~l~~~~~~il~~e~~~~~~~~~----i~viGDIHG~~~~L~~ll~~~~~~~~-~~ 79 (309)
T 2ie4_C 5 VFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCP----VTVCGDVHGQFHDLMELFRIGGKSPD-TN 79 (309)
T ss_dssp -CHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHSCTTEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTT-SC
T ss_pred hhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCEEeccCC----EEEEecCCCCHHHHHHHHHHcCCCCC-CE
Confidence 56678999999999999999999999999999999999999999865 99999999999999999999998765 45
Q ss_pred eeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhh-HHHHHHHHHHhccccccccc
Q 008730 324 YLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVL 402 (556)
Q Consensus 324 ~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~lP~~~~i 402 (556)
+||||||||||++|+||+.+|+++|..+|+++++||||||.+.++..|||.+||.++|+ ..+|+.+.++|++||+++++
T Consensus 80 ~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~~e~~~~yg~~~l~~~~~~~~~~LPl~~~i 159 (309)
T 2ie4_C 80 YLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALV 159 (309)
T ss_dssp EEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSTTGGGTSSHHHHHHHHSSSTHHHHHHHHHTTSSCSCEEE
T ss_pred EEEeCCccCCCCChHHHHHHHHHHHhhCCCcEEEEeCCCCHHHHhhhhhhhHHHHhhcccHHHHHHHHHHHHhCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999995 57999999999999999988
Q ss_pred CCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEE
Q 008730 403 NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVV 482 (556)
Q Consensus 403 ~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~ii 482 (556)
+++++|||||+ +|...++++++.++|+.+.+..+.++|+|||||....+|.+++||.|+.||++++++||++||+++||
T Consensus 160 ~~~il~vHgGl-~p~~~~~~~i~~i~r~~~~~~~~~~~dllWsdp~~~~~~~~s~RG~g~~fG~~~~~~fl~~n~l~~ii 238 (309)
T 2ie4_C 160 DGQIFCLHGGL-SPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVS 238 (309)
T ss_dssp TTTEEECSSCC-CTTCCSHHHHHTSCCSSCCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHHHHTTCSEEE
T ss_pred cCcEEEECCCC-CCcccCHHHHHhhcccccCChhHHHHHHhhCCCccccccccCCCCcccccCHHHHHHHHHHcCCeEEE
Confidence 99999999999 89999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred eeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCCC
Q 008730 483 RSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPD 541 (556)
Q Consensus 483 r~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~ 541 (556)
||||++++||+++++++|||||||||||+.++|+||+|.| +++++++|++|+++|+|.
T Consensus 239 r~Hq~~~~G~~~~~~~~~iTvfSa~ny~~~~~N~~a~l~i-~~~~~~~~~~~~~~~~~~ 296 (309)
T 2ie4_C 239 RAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMEL-DDTLKYSFLQFDPAPRRG 296 (309)
T ss_dssp ECCSCCTEEEEEETTTTEEEECCCSSGGGTSCCEEEEEEE-CTTCCEEEEEECCCC---
T ss_pred ecCcceeCCEEEecCCeEEEEECCcccccCCCCeEEEEEE-CCCCcEeEEEEeCCCCcc
Confidence 9999999999999999999999999999999999999999 889999999999998874
No 8
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=100.00 E-value=3.4e-68 Score=532.34 Aligned_cols=285 Identities=39% Similarity=0.791 Sum_probs=267.3
Q ss_pred HHHHHHHhhc--------CCCCCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCC
Q 008730 249 VKKMMDDFKN--------QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE 320 (556)
Q Consensus 249 i~~~i~~~~~--------~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~ 320 (556)
++++|+++.+ ...++++++..||.++.++|.+||++++++.| ++||||||||+++|.++|+..|+++.
T Consensus 9 ~d~~i~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~e~~l~~~~~~----i~viGDIHG~~~~L~~ll~~~g~~~~ 84 (330)
T 1fjm_A 9 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE 84 (330)
T ss_dssp HHHHHHHHHHTTTTCTTCCCCCCHHHHHHHHHHHHHHHHHSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCSTTS
T ss_pred HHHHHHHHHhccccCCcccCCCCHHHHHHHHHHHHHHHHhCCCeEeecCc----eEEecCCCCCHHHHHHHHHHhCCCCc
Confidence 5666666544 24699999999999999999999999999876 99999999999999999999999865
Q ss_pred CCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccCchhhHHhhhhHHHHHHHHHHhccccccc
Q 008730 321 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH 400 (556)
Q Consensus 321 ~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~ 400 (556)
++|||||||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+|+.++|+..+|+.+.+||++||+++
T Consensus 85 -~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~~e~~~~y~~~l~~~~~~~f~~LPl~~ 163 (330)
T 1fjm_A 85 -SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAA 163 (330)
T ss_dssp -SCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHHTTCCCEE
T ss_pred -ceEEeCCCcCCCCCChHHHHHHHHHhhhhcCCceEEecCCchHhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCceE
Confidence 5599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCC
Q 008730 401 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLD 479 (556)
Q Consensus 401 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~g~~fg~~~~~~fl~~~~~~ 479 (556)
+++++++|||||+ +|...++++++.+.|+.+.++.++++|+|||||... .+|.++.||.++.||++++.+||++++++
T Consensus 164 ~i~~~i~~vHgGl-~p~~~~l~qi~~i~r~~e~~~~g~~~dlLWsdp~~~~~~w~~~~rG~~~~fG~~~~~~fl~~~~l~ 242 (330)
T 1fjm_A 164 IVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLD 242 (330)
T ss_dssp EETTTEEEESSCC-CTTCSCHHHHHHCCSSCCCCSSSHHHHHHHCEECTTCSSEEECTTSSSEEECHHHHHHHHHHHTCS
T ss_pred EEcCcEEEEccCC-CcccCCHHHHhhhhcCccCcccchHHHHHhcCCccccCCcCcccCCCceeeChHHHHHHHHhCCCc
Confidence 9999999999999 899999999999999999999999999999999865 68999999999999999999999999999
Q ss_pred EEEeeccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecCCCC
Q 008730 480 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP 540 (556)
Q Consensus 480 ~iir~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~ 540 (556)
+||||||++++||+++++++|||||||||||+.++|.||||.| ++++.++|++|++.+..
T Consensus 243 liir~Hq~v~~Gy~~~~~~~lvTvfSapnY~~~~~N~ga~l~i-~~~~~~~~~~~~~~~~~ 302 (330)
T 1fjm_A 243 LICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSV-DETLMCSFQILKPADKN 302 (330)
T ss_dssp EEEECCSCCTTSEEEETTTTEEEEBCCTTCCSSSCCCEEEEEE-CTTCCEEEEEECCCC--
T ss_pred eEecccccccCCeEEccCCeEEEEeCCcccccCCCCcEEEEEE-CCCCcEeEEEecCCccc
Confidence 9999999999999999999999999999999999999999999 89999999999987665
No 9
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=100.00 E-value=1.9e-43 Score=359.85 Aligned_cols=231 Identities=20% Similarity=0.271 Sum_probs=183.2
Q ss_pred HhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCC-------CCCCeeeecccccCCCChHHHHHHHHhccc-
Q 008730 278 LRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPS-------EENPYLFNGDFVDRGSFSVEVILTLFAFKC- 349 (556)
Q Consensus 278 ~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~-------~~~~~vflGD~vdrG~~s~e~l~~l~~lk~- 349 (556)
|..+|+++.. .++|+|||||||++++|.++|+..++++ ..+.+||+|||||||++|.||+.+|+.++.
T Consensus 60 ~~~~~~~~~~----~~~i~vigDiHG~~~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG~~s~evl~~l~~l~~~ 135 (342)
T 2z72_A 60 KQIMPDTYLG----IKKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQ 135 (342)
T ss_dssp TSCCCSEECC----CCEEEEECCCTTCHHHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSSSCHHHHHHHHHHHHHH
T ss_pred cccCcceecC----CCCEEEEECCCCCHHHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCCCCHHHHHHHHHHHHHH
Confidence 4556666654 3579999999999999999999988754 346799999999999999999999999985
Q ss_pred --cCCCeEEEecccccccccccc-------cCchhhHHhhhhHHHH---HHHHHHhcccccccccCCeEEEEecccccCC
Q 008730 350 --MCPSAIYLSRGNHESKSMNKI-------YGFEGEVRSKLSETFV---ELFAEVFCCLPLAHVLNQKVFVVHGGLFSVD 417 (556)
Q Consensus 350 --~~p~~v~~lrGNHE~~~~~~~-------~g~~~~~~~~~~~~~~---~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~ 417 (556)
.+|.++++||||||.+.++.. |++..++.......+| ....+||+.||+++.++ +++|||||+ +|.
T Consensus 136 ~~~~~~~v~~v~GNHE~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~lP~~~~~~-~~~~vHgGl-~p~ 213 (342)
T 2z72_A 136 ARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYNKLYSADTEIGQWLRSKNTIIKIN-DVLYMHGGI-SSE 213 (342)
T ss_dssp HHHTTCEEEECCCHHHHHHHHTCCTTSCTTHHHHHHHTTSCGGGGGSTTBHHHHHHHTCCSEEEET-TEEEESSCC-CHH
T ss_pred HhhCCCeEEEEecCCcHHHhhCcccccccccchHHHHhcccHHHHHHHhHHHHHHHhhCCeEEEEC-CEEEEECCC-Chh
Confidence 789999999999999888642 2222222221122333 24678999999999987 799999999 665
Q ss_pred C----CChhhhhhcccCCC-----CCCccchhhhhcCCCCCCCCCCcCCCCC-ccccCHHHHHHHHHHCCCCEEEeeccc
Q 008730 418 G----VKLSDIKTIDRFCE-----PPEEGLMCELLWSDPQPLPGRGPSKRGV-GLSFGADVTKRFLQDNSLDLVVRSHEV 487 (556)
Q Consensus 418 ~----~~~~~i~~~~r~~~-----~~~~~~~~~llw~dp~~~~~~~~~~rg~-g~~fg~~~~~~fl~~~~~~~iir~H~~ 487 (556)
. .++++++.+.|+.. ++..+..++++|+||.. .| .||. +..||++++++||+.+++++|||||++
T Consensus 214 ~~~~~~~l~~i~~~~r~~~~~~~~~~~~~~~~~~lwsd~~~--~w---~R~~~~~~fg~~~~~~fl~~~~~~~IV~GHt~ 288 (342)
T 2z72_A 214 WISRELTLDKANALYRANVDASKKSLKADDLLNFLFFGNGP--TW---YRGYFSETFTEAELDTILQHFNVNHIVVGHTS 288 (342)
T ss_dssp HHHTTCCHHHHHHHHHHHTTSCHHHHHHSHHHHHHHSTTST--TT---CCGGGSTTCCHHHHHHHHHHHTCSEEEECSSC
T ss_pred hcccCCCHHHHHHHhhhhccccccccccCHHHHhccCCCCC--CC---cCCcccccCChHHHHHHHHHCCCcEEEECCCc
Confidence 4 38899988877521 12235678999999864 23 4776 578999999999999999999999999
Q ss_pred cccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEec
Q 008730 488 KDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEA 524 (556)
Q Consensus 488 ~~~G~~~~~~~~~itvfSa~~y~~~~~n~~a~~~~~~ 524 (556)
++. +...+++++|||||+++| +|.+++|.|++
T Consensus 289 ~~~-~~~~~~~~~i~Idsg~~~----gg~la~l~i~~ 320 (342)
T 2z72_A 289 QER-VLGLFHNKVIAVDSSIKV----GKSGELLLLEN 320 (342)
T ss_dssp CSS-CEEETTTTEEECCCCGGG----SSCCCEEEEET
T ss_pred ccc-hhhhcCCCEEEEECCCCC----CCcEEEEEEEC
Confidence 865 667789999999999998 48899999943
No 10
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=99.97 E-value=4e-33 Score=275.20 Aligned_cols=196 Identities=21% Similarity=0.320 Sum_probs=159.7
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccC
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 372 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g 372 (556)
++|+|||||||++++|.++|+.++.++..+.+||+|||||||++|.||+.+|+.+ |.++++||||||.+.++..+|
T Consensus 1 M~i~vigDiHG~~~~l~~ll~~~~~~~~~d~~v~lGD~vdrG~~s~~~l~~l~~l----~~~~~~v~GNHe~~~l~~~~g 76 (280)
T 2dfj_A 1 MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSL----GDSVRLVLGNHDLHLLAVFAG 76 (280)
T ss_dssp -CEEEECCCCSCHHHHHHHHHHTTCCTTTCEEEECSCCSSSSSCHHHHHHHHHHT----GGGEEECCCHHHHHHHHHHTT
T ss_pred CeEEEEecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCcCCCCCccHHHHHHHHhC----CCceEEEECCCcHHHHhHhcC
Confidence 3689999999999999999999998656678999999999999999999999887 358999999999999998888
Q ss_pred chhhHHhh-----hhHHHHHHHHHHhcccccccccCC-eEEEEecccccCCCCChhhhhhcccCCC----CCCccchhhh
Q 008730 373 FEGEVRSK-----LSETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTIDRFCE----PPEEGLMCEL 442 (556)
Q Consensus 373 ~~~~~~~~-----~~~~~~~~~~~~~~~lP~~~~i~~-~~~~vHgGi~~~~~~~~~~i~~~~r~~~----~~~~~~~~~l 442 (556)
|....... +.......+.+||+.||+++.+++ +++|||||+ +|.. ++++++.+.|+.+ .++.+.++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHaGi-~p~~-~l~~~~~~~r~~e~~l~~~~~~~~~~~ 154 (280)
T 2dfj_A 77 ISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGI-TPQW-DLQTAKECARDVEAVLSSDSYPFFLDA 154 (280)
T ss_dssp SSCCCGGGCCHHHHTSTTHHHHHHHHHTSCSEEEETTTTEEEESSCC-CTTC-CHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred CcccchhhhHHHHhhhhHHHHHHHHHHhCCcEEEECCCeEEEEeCCC-CcCc-CHHHHHHHHHHHHHhhcCCcHHHHHHH
Confidence 76421111 112244567899999999988887 899999999 7765 7888888776642 3455568899
Q ss_pred hcCCCCCCCCCCcCCCCCc-cccCHHH--HHHHHHHCC-CCEEEeec-cccccCceEec
Q 008730 443 LWSDPQPLPGRGPSKRGVG-LSFGADV--TKRFLQDNS-LDLVVRSH-EVKDEGYEIEH 496 (556)
Q Consensus 443 lw~dp~~~~~~~~~~rg~g-~~fg~~~--~~~fl~~~~-~~~iir~H-~~~~~G~~~~~ 496 (556)
+|+||. ..|.++.||.+ +.||.++ ..+||+.+| +++++|+| +.+++||...+
T Consensus 155 l~~d~~--~~w~~~~~G~~r~~~~~~~~tr~rf~~~~g~l~~~~r~~~~~~~~g~~~w~ 211 (280)
T 2dfj_A 155 MYGDMP--NNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWF 211 (280)
T ss_dssp TTCSCC--CSCCTTCCHHHHHHHHHHHHHTCCEEETTBEEESSCCSCGGGCCSSCEEGG
T ss_pred hcCCCC--CCcCCCCCCceeEEEeccHHHHHHHhhcCCcEeEEeccChhhcCccccchh
Confidence 999985 57889999998 7899888 467888888 78888888 77778877655
No 11
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=99.89 E-value=7.5e-24 Score=207.61 Aligned_cols=220 Identities=18% Similarity=0.227 Sum_probs=140.5
Q ss_pred HHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEE
Q 008730 277 MLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIY 356 (556)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~ 356 (556)
.+.++|++..+. ++|+|||||||++++|.++++.++..+..+.+||+|||||||+++.||+.+|..+ .++
T Consensus 7 ~~~~~~~l~~~~----~~i~visDiHg~~~~l~~~l~~~~~~~~~d~ii~~GD~vd~g~~~~~~l~~l~~~------~~~ 76 (262)
T 2qjc_A 7 GYANVVTLPNVT----GRVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRL------GAY 76 (262)
T ss_dssp -CCCEEECTTCC----SCEEEECCCTTCHHHHHHHHHHHTCCTTTSEEEECSCCSSSSSCHHHHHHHHHHH------TCE
T ss_pred ccCChhhhcCCC----CeEEEEeCCCCCHHHHHHHHHHHhccCCCCEEEEecCCCCCCCCHHHHHHHHHHC------CCE
Confidence 344555555543 3699999999999999999999987655478999999999999999999998764 489
Q ss_pred EecccccccccccccCchhh-HHhhhh---------HHHHHHHHHHhcccccccccC-CeEEEEecccccCCCC----Ch
Q 008730 357 LSRGNHESKSMNKIYGFEGE-VRSKLS---------ETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVDGV----KL 421 (556)
Q Consensus 357 ~lrGNHE~~~~~~~~g~~~~-~~~~~~---------~~~~~~~~~~~~~lP~~~~i~-~~~~~vHgGi~~~~~~----~~ 421 (556)
+|+||||.+.++..+++..+ |..+++ ..+.....+||+.||+++.++ .+++|||||+ +|... +.
T Consensus 77 ~v~GNHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~i~~~~i~~vHgg~-~p~~~~~~~~~ 155 (262)
T 2qjc_A 77 SVLGNHDAKLLKLVKKLGKKECLKGRDAKSSLAPLAQSIPTDVETYLSQLPHIIRIPAHNVMVAHAGL-HPQRPVDRQYE 155 (262)
T ss_dssp ECCCHHHHHHHHHHHCC-------------CHHHHHHHCCHHHHHHHHTCCSEEEEGGGTEEEESSCC-CTTSCGGGCCH
T ss_pred EEeCcChHHHHhhhcCCCccccccccchHHHHHHHHhhhhHHHHHHHHcCCcEEEECCCcEEEEECCC-CCCCCcccCCH
Confidence 99999999988877666543 333332 233456779999999998885 5899999999 55432 12
Q ss_pred hhhhhcc---cCCCCCCccchhhhhcCCCCCCC--CCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceEec
Q 008730 422 SDIKTID---RFCEPPEEGLMCELLWSDPQPLP--GRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEH 496 (556)
Q Consensus 422 ~~i~~~~---r~~~~~~~~~~~~llw~dp~~~~--~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~ 496 (556)
+++..+. ++.+.+..+. .++|+||.... .|..+.+ +.+.||-||+.+. ++....
T Consensus 156 ~~l~~ir~~~~~~~~~~~G~--~~~~~d~~~~~~~~w~~~~~------------------g~~~vvfGHt~~~-~~~~~~ 214 (262)
T 2qjc_A 156 DEVTTMRNLIEKEQEATGGV--TLTATEETNDGGKPWASMWR------------------GPETVVFGHDARR-GLQEQY 214 (262)
T ss_dssp HHHHHCCEEEEC-------C--CEEEESCSTTCCEEGGGGCC------------------CSSEEEECCCGGG-CCBCTT
T ss_pred HHHhhhhhcccccccCCCCc--cccccCCCCcCCCChhhccC------------------CCCEEEECCCccc-cccccC
Confidence 3333332 2111111222 36899984321 2322222 5678899999864 443322
Q ss_pred CCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 008730 497 DGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 536 (556)
Q Consensus 497 ~~~~itvfSa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 536 (556)
++.++.|-+-.-| ++.=+++.| +.. ++.+..+
T Consensus 215 ~~~~i~IDtG~~~----gG~Lt~l~l-~~~---~~~~~~~ 246 (262)
T 2qjc_A 215 KPLAIGLDSRCVY----GGRLSAAVF-PGG---CIISVPG 246 (262)
T ss_dssp TTTEEECCCBGGG----TSEEEEEEE-TTT---EEEEEEC
T ss_pred CCCEEEeeCcccc----CCeeEEEEE-cCC---cEEEEec
Confidence 2266767665533 345567778 332 4555443
No 12
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=99.86 E-value=1.3e-21 Score=187.07 Aligned_cols=168 Identities=21% Similarity=0.254 Sum_probs=120.5
Q ss_pred CeeeecCCCCCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccc
Q 008730 283 SLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNH 362 (556)
Q Consensus 283 ~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNH 362 (556)
.+.+++.+..++|+|||||||++.+|.++++.++.++..+.+||+||+||||+++.|++.+|.. ..+++++|||
T Consensus 3 ~~~~~~~~~~~~i~visDiHg~~~~l~~~l~~~~~~~~~d~~i~~GD~~~~g~~~~~~~~~l~~------~~~~~v~GNh 76 (221)
T 1g5b_A 3 YYEKIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITF------PWFRAVRGNH 76 (221)
T ss_dssp SEEEEEGGGCSCEEEECCCTTCHHHHHHHHHHHTCCTTTCEEEECSCCSSSSSCHHHHHGGGGS------TTEEECCCHH
T ss_pred ceeecCCCCCceEEEEEcCCCCHHHHHHHHHHccCCCCCCEEEEeCCccCCCCChHHHHHHHhc------CCEEEEccCc
Confidence 4556666667899999999999999999999998765567899999999999999999987643 3699999999
Q ss_pred cccccccccCchh---------hHHhh---hhHHHHHHHHHHhccccccccc---CCeEEEEecccccCCCCChhhhhhc
Q 008730 363 ESKSMNKIYGFEG---------EVRSK---LSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTI 427 (556)
Q Consensus 363 E~~~~~~~~g~~~---------~~~~~---~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~ 427 (556)
|.+.++..+++.. .+... ....+...+.+||+.||+.+.+ +.+++|||||+| +.... .
T Consensus 77 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~~~~~~~~i~~vHgg~~-~~~~~------~ 149 (221)
T 1g5b_A 77 EQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYP-FDEYE------F 149 (221)
T ss_dssp HHHHHHHHSTTCCCHHHHTTTGGGGGGSCHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEECSSCCC-SSBCC------T
T ss_pred HHHHHhhhccCCcHHHHHHcCCCchhhcCHHHHHHHHHHHHHHHhCCcEEEEEecCCeEEEEecCCC-hhhcc------c
Confidence 9887764432211 11001 1245677888999999999876 568999999983 32211 1
Q ss_pred ccCCCCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHH-----HCCCCEEEeeccccc
Q 008730 428 DRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQ-----DNSLDLVVRSHEVKD 489 (556)
Q Consensus 428 ~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~-----~~~~~~iir~H~~~~ 489 (556)
.++. ...+++|++|.. .+..+ ..+.+.+|-||+.+.
T Consensus 150 ~~~~------~~~~~lw~~~~~--------------------~~~~~~~~~~~~~~~~vv~GHth~~ 190 (221)
T 1g5b_A 150 GKPV------DHQQVIWNRERI--------------------SNSQNGIVKEIKGADTFIFGHTPAV 190 (221)
T ss_dssp TCCC------CHHHHHHCCHHH--------------------HHHHTTCCCCCBTSSEEEECSSCCS
T ss_pred CCCc------cccccccCchhh--------------------hhhccccCCcccCCCEEEECCCCCc
Confidence 1111 135788987421 11122 346788999999875
No 13
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.82 E-value=3.6e-19 Score=154.37 Aligned_cols=122 Identities=30% Similarity=0.544 Sum_probs=115.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (556)
Q Consensus 5 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 84 (556)
....-+|+.++++.++|+.+++.|+|++|+..|+++++++|.++.+|.++|.++.++|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 126 (556)
|+++|.+|..+|++++|+..|+++++++|++..++..++.++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988764
No 14
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.73 E-value=4e-17 Score=145.80 Aligned_cols=125 Identities=13% Similarity=0.081 Sum_probs=115.8
Q ss_pred CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
...+|+.+..++.+|.+|+..|+|++|+++|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|+++.+++
T Consensus 24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 103 (150)
T 4ga2_A 24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL 103 (150)
T ss_dssp SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence 34567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 87 RRGAAYLAMGKFKEALKD-FQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~-~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
++|.+|...|++++|... +++|++++|+++.++..++.++...|+
T Consensus 104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999887765 599999999999999999888766553
No 15
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.72 E-value=1.8e-16 Score=141.76 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=108.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (556)
Q Consensus 5 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 84 (556)
.....+|+.+.+++.+|..++..|+|++|+..|+++++++|.++.+|.++|.++..+|+|++|+.+|+++++++|+++.+
T Consensus 27 ~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 116 (556)
|+++|.+|..+|++++|+..|++++++.|+.+
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999865
No 16
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.1e-16 Score=135.94 Aligned_cols=118 Identities=27% Similarity=0.433 Sum_probs=113.4
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
|..+..+..+|..++..|+|++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 008730 91 AYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKA 128 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~l~~~~~~ 128 (556)
++..+|++++|+..|+++++++ |++..++..+..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999999988887654
No 17
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.71 E-value=8.1e-17 Score=179.35 Aligned_cols=133 Identities=24% Similarity=0.302 Sum_probs=126.8
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
...|+.++++.++|.++..+|++++|+.+|++|++++|+++.++.++|.+|.++|++++|+..|++|++++|+++.+|++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+|.+|..+|++++|++.|++|++++|++..++.+++.++..+|+ +++|++.++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~--~~eAi~~~~ 135 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN--IPEAIASYR 135 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999999999999999999999988 788877776
No 18
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=99.70 E-value=1.4e-16 Score=154.74 Aligned_cols=190 Identities=15% Similarity=0.116 Sum_probs=130.7
Q ss_pred CCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccccccc
Q 008730 292 GKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY 371 (556)
Q Consensus 292 ~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~ 371 (556)
.++|.+||||||++..|.++++.++ ..+.+|++||++|+|+++.+++.+|..++ .+++++||||........
T Consensus 3 ~mri~~isDiHg~~~~l~~~l~~~~---~~d~ii~~GDl~~~g~~~~~~~~~l~~~~-----~~~~v~GNhD~~~~~~~~ 74 (246)
T 3rqz_A 3 AMRILIISDVHANLVALEAVLSDAG---RVDDIWSLGDIVGYGPRPRECVELVRVLA-----PNISVIGNHDWACIGRLS 74 (246)
T ss_dssp CCCEEEECCCTTCHHHHHHHHHHHC---SCSEEEECSCCSSSSSCHHHHHHHHHHHC-----SSEECCCHHHHHHTCCCC
T ss_pred CcEEEEEeecCCCHHHHHHHHHhcc---CCCEEEECCCcCCCCCCHHHHHHHHHhcC-----CCEEEeCchHHHHhccCC
Confidence 5789999999999999999999887 34679999999999999999999998885 278999999988765432
Q ss_pred C--c---hhhHHhhhhHHHHHHHHHHhcccccccccCCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCC
Q 008730 372 G--F---EGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSD 446 (556)
Q Consensus 372 g--~---~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~d 446 (556)
. + ...........+.....+|+..+|.....+ +++++||++.++. |
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~-~i~~~Hg~p~~~~--------------------------~-- 125 (246)
T 3rqz_A 75 LDEFNPVARFASYWTTMQLQAEHLQYLESLPNRMIDG-DWTVVHGSPRHPI--------------------------W-- 125 (246)
T ss_dssp CC--CGGGGCHHHHHHHHCCHHHHHHHHHCCSEEEET-TEEEESSCSSSTT--------------------------T--
T ss_pred ccccCHHHHHHHHHHHHHcCHHHHHHHHhCCcEEEEC-CEEEEECCcCCcc--------------------------c--
Confidence 2 1 111111123345556678999999987755 8999999861110 0
Q ss_pred CCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceE--------------------ecCCeEEEEecC
Q 008730 447 PQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEI--------------------EHDGKLITVFSA 506 (556)
Q Consensus 447 p~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~--------------------~~~~~~itvfSa 506 (556)
++.+....+.+.++..+.+++|-||+-.+..+.. ..+..++..=|.
T Consensus 126 --------------~~~~~~~~~~~~l~~~~~~l~i~GHtH~p~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ivNpGSV 191 (246)
T 3rqz_A 126 --------------EYIYNARIAALNFPAFDTPLCFVGHTHVPLYIREDEALSNVAPHHPNDGEVLDVSSGRYIINPGAV 191 (246)
T ss_dssp --------------CCCCSHHHHHHHGGGCCSSEEECCSSSSEEEEEHHHHHTTCCCBCCCTTCEEECSSSCEEEEECCS
T ss_pred --------------cccCChHHHHHHHhccCCCEEEECCcCcccEEEecccccccccccccccceeecCCCeEEEECCcc
Confidence 0112345667778888999999999986544431 113445555554
Q ss_pred CCCCCCCCCeEEEEEEecCCCceeEEE
Q 008730 507 PNYCDQMGNKGAFIRFEAPTLKPNIVT 533 (556)
Q Consensus 507 ~~y~~~~~n~~a~~~~~~~~~~~~~~~ 533 (556)
-.--+ ..+.+++++++.++..++|..
T Consensus 192 G~Prd-g~p~A~Y~i~d~~~~~v~~~r 217 (246)
T 3rqz_A 192 GQPRD-GDPRASYAIFEPDAQRVTFHR 217 (246)
T ss_dssp SCCCS-SCCSEEEEEEEGGGTEEEEEE
T ss_pred CCCCC-cCCcceEEEEECCCCEEEEEE
Confidence 22111 356788999965554444443
No 19
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.69 E-value=8.4e-16 Score=135.53 Aligned_cols=128 Identities=19% Similarity=0.260 Sum_probs=119.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (556)
Q Consensus 5 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 84 (556)
.....+|+.+..++.+|..++..|+|++|+..|+++++.+|.++.+|..+|.++..+|++++|+..|+++++++|+++.+
T Consensus 9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 88 (142)
T 2xcb_A 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
++.+|.+|..+|++++|+..|+++++++|+++........+...++..
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988877777776666553
No 20
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.69 E-value=7.3e-16 Score=137.33 Aligned_cols=124 Identities=17% Similarity=0.257 Sum_probs=115.5
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
..+|..+..++.+|..++..|+|++|+..|+++++.+|.++.+|+++|.++..+|++++|+..|+++++++|+++.++++
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
+|.+|..+|++++|+..|+++++++|+++........+...+..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 138 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA 138 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999988776666666555544
No 21
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.68 E-value=1.7e-15 Score=136.74 Aligned_cols=119 Identities=31% Similarity=0.436 Sum_probs=112.2
Q ss_pred CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
..+.+..+..++.+|..++..|+|++|+..|+++++++|.++.+|.++|.+|..+|++++|+.+|+++++++|+++.+|+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 4 SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~ 125 (556)
++|.+|..+|++++|+.+|+++++++|++..++...+..
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999999999999999999998865555544
No 22
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=2.7e-16 Score=149.35 Aligned_cols=130 Identities=19% Similarity=0.272 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
|.++..+..+|..+...|++++|+..|+++++.+|+++.++.++|.++.+.|++++|+..|+++++++|+++.+++.+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 91 AYLAM-----------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 91 ~~~~~-----------g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++..+ |++++|+..|+++++++|+++.++..++.++..+|+ +++|+..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 142 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE--RDKAEASLK 142 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence 99999 999999999999999999999999999999998888 677777665
No 23
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.68 E-value=7.9e-16 Score=133.26 Aligned_cols=115 Identities=27% Similarity=0.387 Sum_probs=104.5
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh------
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP------ 82 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~------ 82 (556)
..++.+.++.++|..+++.|+|++|+.+|++|++++|+++.+|.++|.+|..+|+|++|+..|+++++++|++.
T Consensus 3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008730 83 -KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (556)
Q Consensus 83 -~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 124 (556)
.+++++|.++..+|++++|++.|+++++..|+ ++....+..
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 124 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE 124 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence 58999999999999999999999999999885 555544443
No 24
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=1.9e-15 Score=138.76 Aligned_cols=129 Identities=16% Similarity=0.204 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
+++..|+++|.++...|+|++|+..|+++++++|+++.++..+|.+|.++|++++|+..+++++..+|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+...+++++|+..+++++++.|++..++..++.++..+++ +++|++.++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 131 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE--HDKAIEAYE 131 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC--chhHHHHHH
Confidence 9999999999999999999999999999999999999888 788887776
No 25
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=1e-15 Score=145.43 Aligned_cols=132 Identities=19% Similarity=0.206 Sum_probs=126.3
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------hCHHHHHHHHHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-----------EEYGSAIQDASKAIE 76 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~-----------g~~~~A~~~~~~al~ 76 (556)
..+|+.+.++..+|.++...|++++|+..|+++++++|+++.++.++|.++... |++++|+..|+++++
T Consensus 33 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 112 (217)
T 2pl2_A 33 KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112 (217)
T ss_dssp TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 77 IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 77 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++|+++.+++.+|.++..+|++++|+..|+++++++ +++.++..++.++...|+ +++|+..++
T Consensus 113 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~--~~~A~~~~~ 175 (217)
T 2pl2_A 113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGR--LDEALAQYA 175 (217)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999999999999999999999999 999999999999999988 677777665
No 26
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.67 E-value=9.1e-16 Score=138.30 Aligned_cols=124 Identities=24% Similarity=0.349 Sum_probs=114.3
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHhhCHHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL------------------NSQNAVYYANRAFAHTKLEEYGSAIQ 69 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~------------------~p~~~~a~~~lg~~~~~~g~~~~A~~ 69 (556)
++....+..+..+|..++..|+|++|+..|++++++ +|.+..++.++|.||.++|+|++|+.
T Consensus 5 ~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~ 84 (162)
T 3rkv_A 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE 84 (162)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 455677899999999999999999999999999999 77778999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhh
Q 008730 70 DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP-DAAQKVKECEKAVKK 131 (556)
Q Consensus 70 ~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~ 131 (556)
+++++++++|+++.+|+++|.+|..+|++++|+..|+++++++|+++ .+...++.+...++.
T Consensus 85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 678888888776655
No 27
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=99.67 E-value=9.4e-16 Score=149.31 Aligned_cols=198 Identities=15% Similarity=0.085 Sum_probs=126.5
Q ss_pred CcceEeccCCCCHHHHHHHHHhcC---CCC-CCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccc
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNG---LPS-EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 368 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~---~~~-~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~ 368 (556)
++|++||||||++..|.++++.+. ..+ ..+.+|++||++|+|+.+.+++.+|..+.... .+++++||||.....
T Consensus 2 m~i~~isD~H~~~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~~~~~~~~~l~~l~~~~--~~~~v~GNhD~~~~~ 79 (252)
T 1nnw_A 2 VYVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKE--NVKIIRGKYDQIIAM 79 (252)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSCHHHHHHHHHHHHHHS--CEEEECCHHHHHHHH
T ss_pred cEEEEEeecCCCHHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCCCHHHHHHHHHhhHhhc--CeeEEecchHHHhhc
Confidence 468999999999999999988765 321 34679999999999999999999998876322 499999999987654
Q ss_pred cccCch-----------h---hHHhhhhHHHHHHHHHHhccccccccc--CC-eEEEEecccccCCCCChhhhhhcccCC
Q 008730 369 KIYGFE-----------G---EVRSKLSETFVELFAEVFCCLPLAHVL--NQ-KVFVVHGGLFSVDGVKLSDIKTIDRFC 431 (556)
Q Consensus 369 ~~~g~~-----------~---~~~~~~~~~~~~~~~~~~~~lP~~~~i--~~-~~~~vHgGi~~~~~~~~~~i~~~~r~~ 431 (556)
....+. . .........+.....+|+..+|....+ ++ +++++||++..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~~~~~~i~~~H~~p~~~~-------------- 145 (252)
T 1nnw_A 80 SDPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSPINPF-------------- 145 (252)
T ss_dssp SCTTCSSSGGGGGSSCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCEEEEETTEEEEEESSCSSCTT--------------
T ss_pred cccccCCcccccchhhhHHHHHHHHHHHHHCCHHHHHHHHhCCceEEEeeCCcEEEEEcCCCCCCc--------------
Confidence 221110 0 000111234455567899999987654 33 7999999751110
Q ss_pred CCCCccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHC-CCCEEEeeccccccCceEecCCeE-EEEecCCCC
Q 008730 432 EPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDN-SLDLVVRSHEVKDEGYEIEHDGKL-ITVFSAPNY 509 (556)
Q Consensus 432 ~~~~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~-~~~~iir~H~~~~~G~~~~~~~~~-itvfSa~~y 509 (556)
.+.+|.+ -+.+.+.++++.. +++++|-||...+.... .++.+ +..=| ..+
T Consensus 146 --------~~~~~~~-----------------~~~~~l~~~~~~~~~~~~vi~GHtH~~~~~~--~~~~~~in~Gs-~~~ 197 (252)
T 1nnw_A 146 --------DGEVLAE-----------------QPTSYYEAIMRPVKDYEMLIVASPMYPVDAM--TRYGRVVCPGS-VGF 197 (252)
T ss_dssp --------TCCCCSS-----------------CCHHHHHHHHGGGTTSSEEEESTTCSEEEEE--ETTEEEEEECC-SSS
T ss_pred --------ccccCCC-----------------CCHHHHHHHHhcCCCCCEEEECCccccceEe--cCCeEEEECCC-ccC
Confidence 0001111 1235667777777 99999999998765443 34533 22222 221
Q ss_pred CCCCCCeEEEEEEecCCCceeEEEE
Q 008730 510 CDQMGNKGAFIRFEAPTLKPNIVTF 534 (556)
Q Consensus 510 ~~~~~n~~a~~~~~~~~~~~~~~~~ 534 (556)
.-.....+++++++.++.++++..+
T Consensus 198 ~~~~~~~~~y~il~~~~~~v~~~~v 222 (252)
T 1nnw_A 198 PPGKEHKATFALVDVDTLKPKFIEV 222 (252)
T ss_dssp CSSSSCCEEEEEEETTTCCEEEEEE
T ss_pred CCCCCCcceEEEEECCCCeEEEEEe
Confidence 1111235788888656666666555
No 28
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.66 E-value=2.9e-16 Score=139.72 Aligned_cols=119 Identities=20% Similarity=0.222 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhhCHHHHHHHHHHHHHh--
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAV-----YYANRAFAHTKLEEYGSAIQDASKAIEI-- 77 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-------~~~-----a~~~lg~~~~~~g~~~~A~~~~~~al~l-- 77 (556)
..+..+.++|+.++..|+|++|+..|++|++++|+ +.. +|.++|.++.++|+|++|+.+|++|+++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 46788999999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred -----CCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 78 -----DPRYPKGY----YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 78 -----~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
+|++..+| +++|.++..+|++++|+.+|+++++++|++......+..+.....
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999877777766655443
No 29
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.65 E-value=2.5e-15 Score=141.69 Aligned_cols=130 Identities=17% Similarity=0.157 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhhCHHHHHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN----------------RAFAHTKLEEYGSAIQDASKAIE 76 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~----------------lg~~~~~~g~~~~A~~~~~~al~ 76 (556)
.+..+...|..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 77 IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 77 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.++...+....+++...+.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998877655555554433
No 30
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.64 E-value=4.9e-15 Score=127.35 Aligned_cols=126 Identities=32% Similarity=0.482 Sum_probs=120.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (556)
Q Consensus 5 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 84 (556)
......+..+.+++.+|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 7 HHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp TTCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
++.+|.++..+|++++|+..|+++++++|++..++..++.++...+
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999987665
No 31
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.63 E-value=1.7e-14 Score=123.02 Aligned_cols=126 Identities=36% Similarity=0.578 Sum_probs=119.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 85 (556)
..+.++..+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 4 GSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
+.+|.++...|++++|+..|+++++++|++..++..++.++..+++
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988776
No 32
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.63 E-value=3.7e-16 Score=139.49 Aligned_cols=114 Identities=17% Similarity=0.086 Sum_probs=106.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 008730 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF 98 (556)
Q Consensus 19 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 98 (556)
.+|..+...|++++|++.+++++..+|+++.+++.+|.+|.+.|+|++|+..|+++++++|+++.+|+.+|.+|..+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 47888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 99 ~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
++|+..|+++++++|+++.++..++.++...++.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Confidence 9999999999999999999999999999988873
No 33
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=1.6e-15 Score=156.72 Aligned_cols=134 Identities=15% Similarity=0.107 Sum_probs=126.8
Q ss_pred CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCCCChHHH
Q 008730 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~ 85 (556)
...+|..+.++..+|.++...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+..|+++++++|++..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 356789999999999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+++|.++..+|++++|+..|+++++++|++..++..++.++..+++ +++|+..+.
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~--~~eAl~~~~ 224 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--WDNELQYVD 224 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988 456665554
No 34
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.63 E-value=1.5e-14 Score=129.47 Aligned_cols=135 Identities=53% Similarity=0.854 Sum_probs=124.1
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
......+..+..+|..++..|++++|+..|+++++.+|.++.++.++|.++...|++++|+..++++++++|.++.+++.
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 86 (166)
T 1a17_A 7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+|.++..+|++++|+..|+++++++|++..++..++.+.......++++|++..+
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999977777755555555888877765
No 35
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.62 E-value=3e-15 Score=166.73 Aligned_cols=124 Identities=23% Similarity=0.289 Sum_probs=120.5
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
.+|+.+.++.++|.++.+.|++++|+.+|++|++++|+++.+|+++|.++.++|++++|++.|++|++++|+++.+|+++
T Consensus 38 l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~L 117 (723)
T 4gyw_A 38 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL 117 (723)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
|.+|..+|++++|++.|++|++++|+++.++.+++.++..+++.
T Consensus 118 g~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 118 ASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999999999999999999999999998884
No 36
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=8.8e-15 Score=134.22 Aligned_cols=132 Identities=20% Similarity=0.278 Sum_probs=126.5
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
.+|+.+.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...++++.|+..+.++++++|+++.++..+
T Consensus 34 ~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~l 113 (184)
T 3vtx_A 34 ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKL 113 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
|.+|..+|++++|++.|+++++++|+++.++..+|.++..+|+ +++|++.++
T Consensus 114 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 165 (184)
T 3vtx_A 114 GLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL--RDEAVKYFK 165 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 677777665
No 37
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.61 E-value=1.8e-14 Score=146.44 Aligned_cols=124 Identities=30% Similarity=0.472 Sum_probs=119.6
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDASK 73 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~ 73 (556)
..|..+..+..+|..++..|+|++|+..|+++++++|.+ ..++.++|.+|.++|++++|+.+|++
T Consensus 142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 357788999999999999999999999999999999999 69999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 74 al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
+++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+++.
T Consensus 222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988874
No 38
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.61 E-value=1.3e-14 Score=125.99 Aligned_cols=123 Identities=29% Similarity=0.428 Sum_probs=113.9
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
..+..+..++.+|..++..|+|++|+..|+++++.+|.++.++.++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHhh
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPN-----DPDAAQKVKECEKAVKK 131 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~~l~~~~~~~~~ 131 (556)
|.++..+|++++|+..|+++++++|+ +..+...+..+......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 77888888877665543
No 39
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.61 E-value=1e-14 Score=138.83 Aligned_cols=128 Identities=23% Similarity=0.258 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNS-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
.+..++.+|..++..|+|++|+..|+++++++| .+..+++++|.++..+|++++|+..|+++++.+|+++.+++.+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 458999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 92 YLAMGKFKEALKDFQQVKKLSPNDP-------DAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~p~~~-------~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
|..+|++++|+..|+++++++|+++ .++..++.++...++ +++|++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~ 141 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN--IEKAEENYK 141 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc--HHHHHHHHH
Confidence 9999999999999999999999999 557777777777766 788877766
No 40
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.59 E-value=6.3e-14 Score=117.30 Aligned_cols=115 Identities=31% Similarity=0.544 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
+.+..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 126 (556)
+..+|++++|+..|+++++.+|+++.++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999998888765
No 41
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.59 E-value=1.1e-14 Score=124.98 Aligned_cols=104 Identities=12% Similarity=0.056 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 93 (556)
...++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.+|.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 008730 94 AMGKFKEALKDFQQVKKLSPNDPD 117 (556)
Q Consensus 94 ~~g~~~~A~~~~~~al~l~p~~~~ 117 (556)
..|++++|+..|+++++++|++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999998754
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=1.1e-14 Score=150.51 Aligned_cols=122 Identities=9% Similarity=0.028 Sum_probs=118.0
Q ss_pred CChhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKK-YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~-~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
.+|+.+.+|..+|.++...|+ +++|+..|+++++++|++..+|+++|.++..+|++++|+..|+++++++|++..+|++
T Consensus 126 l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~ 205 (382)
T 2h6f_A 126 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHH
Confidence 467889999999999999997 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
+|.++..+|++++|+.+|+++++++|++..++..++.++..++
T Consensus 206 lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998843
No 43
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.58 E-value=3.1e-15 Score=133.72 Aligned_cols=113 Identities=12% Similarity=-0.046 Sum_probs=104.3
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008730 28 KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (556)
Q Consensus 28 g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 107 (556)
+++-.+-..++++++++|+++.+++.+|.++.+.|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|++
T Consensus 16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV 95 (151)
T ss_dssp HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 33444556688889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 108 VKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 108 al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+++++|+++.++..++.++..+|+ +++|+..++
T Consensus 96 al~l~P~~~~~~~~lg~~~~~lg~--~~eA~~~~~ 128 (151)
T 3gyz_A 96 AFALGKNDYTPVFHTGQCQLRLKA--PLKAKECFE 128 (151)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999999999998 677777665
No 44
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.58 E-value=6.1e-14 Score=130.67 Aligned_cols=123 Identities=28% Similarity=0.401 Sum_probs=117.6
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhhCHHHHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----------------VYYANRAFAHTKLEEYGSAIQDAS 72 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~----------------~a~~~lg~~~~~~g~~~~A~~~~~ 72 (556)
+.+..+..+..+|..++..|+|++|+..|++++++.|.++ .++.++|.++..+|++++|+.+++
T Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3456788999999999999999999999999999999987 899999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 73 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++
T Consensus 113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988876
No 45
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=8.1e-14 Score=122.13 Aligned_cols=119 Identities=34% Similarity=0.502 Sum_probs=113.2
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 84 (556)
...+..+..++.+|..++..|++++|+..|+++++.+|++ ..++.++|.++...|++++|+..++++++.+|+++.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 4456789999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 126 (556)
++.+|.++..+|++++|+..|+++++++|++..++..++.+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887764
No 46
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.56 E-value=1.7e-13 Score=115.75 Aligned_cols=117 Identities=32% Similarity=0.536 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
.+..+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.+++.+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (556)
Q Consensus 93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 129 (556)
...|++++|+..|+++++.+|+++.++..++.++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999887654
No 47
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=99.56 E-value=1.2e-14 Score=142.77 Aligned_cols=113 Identities=17% Similarity=0.104 Sum_probs=85.6
Q ss_pred cceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccccccc--
Q 008730 294 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY-- 371 (556)
Q Consensus 294 ~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~-- 371 (556)
+|.|||||||++..|.++++.+... ..+.+|++||+|++|+++.||+.+|..++ .+++++||||...+....
T Consensus 13 ~i~~iSDiHg~~~~l~~vl~~~~~~-~~D~ii~~GDlv~~g~~~~~~~~~l~~~~-----~~~~v~GNhD~~~~~~~~~~ 86 (270)
T 3qfm_A 13 KIALLSDIHGNTTALEAVLADARQL-GVDEYWLLGDILMPGTGRRRILDLLDQLP-----ITARVLGNWEDSLWHGVRKE 86 (270)
T ss_dssp EEEEECCCTTCHHHHHHHHHHHHHT-TCCEEEECSCCSSSSSCSHHHHHHHHTSC-----EEEECCCHHHHHHHHHHTTC
T ss_pred EEEEEecCCCCHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCCCHHHHHHHHHccC-----CEEEEcCChHHHHHHhhccc
Confidence 6999999999999999999987654 34679999999999999999999998873 588999999998776432
Q ss_pred -CchhhHHh------hh-hHHHHHHHHHHhccccccccc--C-CeEEEEecc
Q 008730 372 -GFEGEVRS------KL-SETFVELFAEVFCCLPLAHVL--N-QKVFVVHGG 412 (556)
Q Consensus 372 -g~~~~~~~------~~-~~~~~~~~~~~~~~lP~~~~i--~-~~~~~vHgG 412 (556)
+|...... .| ...+.....+|++.||....+ + .+++++||.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~L~~LP~~~~~~~~g~~i~lvHg~ 138 (270)
T 3qfm_A 87 LDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDLTVGISHHL 138 (270)
T ss_dssp SCTTSHHHHHHHHHHHHHHTTSCHHHHHHHHSCCSEEEEEETTEEEEEESSB
T ss_pred cCCCcHHHHHHHHHHHHHHHHcCHHHHHHHHhCCCceEEEECCcEEEEEECC
Confidence 33322111 11 123334567899999998755 3 489999964
No 48
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.55 E-value=5.2e-14 Score=149.26 Aligned_cols=124 Identities=30% Similarity=0.470 Sum_probs=115.4
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDASK 73 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~ 73 (556)
..|..+..+..+|..+++.|+|++|+..|++|++++|.+ ..+|.++|.||.++|+|++|+.+|++
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 356788999999999999999999999999999999998 79999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 74 al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
|++++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.++..+++.
T Consensus 343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988874
No 49
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.54 E-value=3.9e-14 Score=157.73 Aligned_cols=134 Identities=15% Similarity=-0.009 Sum_probs=127.3
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
+.+|+.+.++..+|.++...|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|+++.++++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 45688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCCC
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESE 144 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~ 144 (556)
+|.++..+|++++ ++.|++|++++|++..++.+++.++..+|+ +++|++.+++.
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~~a 560 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD--RVGAVRTLDEV 560 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHTS
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC--HHHHHHHHHhh
Confidence 9999999999999 999999999999999999999999999988 78888877643
No 50
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.53 E-value=1e-13 Score=131.85 Aligned_cols=131 Identities=17% Similarity=0.188 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-------HH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-------KG 84 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-------~~ 84 (556)
.....++.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++ .+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 119 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIY 119 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 44577888999999999999999999999999999999999999999999999999999999999999998 67
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++.+|.++..+|++++|+..|+++++++|+ +..++..++.++...++...+++.....
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 179 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLAS 179 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999 9999999999999988865677655543
No 51
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.53 E-value=2.3e-13 Score=116.07 Aligned_cols=119 Identities=29% Similarity=0.456 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------hHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PKG 84 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~~ 84 (556)
..+..+..+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999998877 899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
++.+|.++...|++++|+..|+++++..| ++.....++.+...+++
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 68888889888877665
No 52
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.53 E-value=2.3e-14 Score=123.84 Aligned_cols=102 Identities=21% Similarity=0.246 Sum_probs=95.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730 39 QAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (556)
Q Consensus 39 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 118 (556)
++..++|+.+.++.++|.++++.|+|++|+..|+++++++|.++.+|+++|.+|..+|++++|+..|+++++++|++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 119 AQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+..+|.++..+++ +++|++.++
T Consensus 84 ~~~lg~~~~~~~~--~~~A~~~~~ 105 (126)
T 4gco_A 84 YIRKAACLVAMRE--WSKAQRAYE 105 (126)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHCCC--HHHHHHHHH
Confidence 9999999999988 688877766
No 53
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.52 E-value=2.3e-13 Score=116.68 Aligned_cols=115 Identities=18% Similarity=0.156 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRR 88 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l 88 (556)
+.++.+|..++..|+|++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578899999999999999999999999999998 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 129 (556)
|.++..+|++++|+..|+++++..|+++.+......+....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877766655443
No 54
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.51 E-value=1.9e-13 Score=140.64 Aligned_cols=122 Identities=22% Similarity=0.462 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIE----------------LNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~----------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 74 (556)
...+..+..+|..++..|+|++|+..|+++++ .+|.+..+|.++|.+|.++|+|++|+.+|+++
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 45577899999999999999999999999999 78888999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 75 IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 75 l~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
++++|+++.+++++|.+|..+|++++|+..|++|++++|++..++..++.++..+++.
T Consensus 300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888873
No 55
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=9.9e-13 Score=119.13 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=104.6
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
..|..+..+..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.+++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 116 (186)
T 3as5_A 37 ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRL 116 (186)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHH
Confidence 34455677888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
|.++...|++++|+..++++++..|++..++..++.++...++ +++|+....
T Consensus 117 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 168 (186)
T 3as5_A 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR--HEEALPHFK 168 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 8888888888888888888888888888888888888777776 556655444
No 56
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.50 E-value=1.1e-13 Score=122.94 Aligned_cols=102 Identities=20% Similarity=0.221 Sum_probs=93.8
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730 25 FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY----------GSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (556)
Q Consensus 25 ~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 94 (556)
-+.+.|++|+..|+++++++|+++++|.++|.++.+++++ ++|+..|++|++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3557899999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730 95 MG-----------KFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (556)
Q Consensus 95 ~g-----------~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 126 (556)
+| ++++|+++|++|++++|++......+..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 85 899999999999999999988777766553
No 57
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.49 E-value=8.3e-13 Score=112.72 Aligned_cols=126 Identities=29% Similarity=0.482 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 94 (556)
.++..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 95 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.|++++|+..++++++..|.+..++..++.++...++ +++|+..+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 127 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--YDEAIEYYQ 127 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc--HHHHHHHHH
Confidence 9999999999999999999999999999999988777 566655443
No 58
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.49 E-value=2.6e-13 Score=132.04 Aligned_cols=133 Identities=21% Similarity=0.191 Sum_probs=120.5
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--- 81 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--- 81 (556)
..++..+..++.+|..++..|+|++|+..|+++++.+|.+ +.+++.+|.++.++|++++|+..|+++++.+|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 3456778999999999999999999999999999999999 9999999999999999999999999999998854
Q ss_pred hHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHHhhhhHHH
Q 008730 82 PKGYYRRGAAYLA--------MGKFKEALKDFQQVKKLSPNDPDAA-----------------QKVKECEKAVKKLKFEE 136 (556)
Q Consensus 82 ~~~~~~lg~~~~~--------~g~~~~A~~~~~~al~l~p~~~~~~-----------------~~l~~~~~~~~~~~~~~ 136 (556)
+.+++.+|.++.. +|++++|+..|+++++..|+++.+. ..++.++...|+ +++
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~ 166 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL--YEA 166 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHH
Confidence 6789999999999 9999999999999999999987666 677888888777 778
Q ss_pred HhcCCC
Q 008730 137 AIAVPE 142 (556)
Q Consensus 137 Ai~~~~ 142 (556)
|+..+.
T Consensus 167 A~~~~~ 172 (261)
T 3qky_A 167 AAVTYE 172 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877766
No 59
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.48 E-value=6.3e-13 Score=124.53 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
..+..++.+|..++..|++++|+..|++++ +| ++.++.++|.++...|++++|+..|+++++++|+++.+++++|.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 456778999999999999999999999996 44 789999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 92 YLAMGKFKEALKDFQQVKKLSPNDP----------------DAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~p~~~----------------~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
|..+|++++|+..|++++++.|++. .++..++.++..+++ +++|+..+.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 145 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLA 145 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC--HHHHHHHHH
Confidence 9999999999999999999998877 999999999999887 677766655
No 60
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.48 E-value=7.7e-13 Score=124.50 Aligned_cols=122 Identities=13% Similarity=0.095 Sum_probs=98.8
Q ss_pred CChhHHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHH
Q 008730 9 SSVSRAEELKA----------------LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72 (556)
Q Consensus 9 ~~~~~a~~~~~----------------lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 72 (556)
.+|+.+.+++. +|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+
T Consensus 33 ~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 112 (208)
T 3urz_A 33 LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112 (208)
T ss_dssp HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35667777777 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 73 KAIEIDPRYPKGYYRRGAAYLAMGK--FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 73 ~al~l~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
++++++|+++.+++++|.+|+..|+ .+.+...+++++...|. ..++..++.++...++
T Consensus 113 ~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~ 172 (208)
T 3urz_A 113 KILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTR 172 (208)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccC
Confidence 9999999999999999999977654 34566666666532221 2345556666666555
No 61
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.47 E-value=3.2e-13 Score=147.05 Aligned_cols=133 Identities=12% Similarity=0.093 Sum_probs=123.5
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
+.+|..+..+..+|..+...|++++|++.|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|+++.++++
T Consensus 17 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 96 (568)
T 2vsy_A 17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW 96 (568)
T ss_dssp ----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---hhhhHHHHhcCCC
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV---KKLKFEEAIAVPE 142 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~---~~~~~~~Ai~~~~ 142 (556)
+|.+|..+|++++|++.|+++++++|++..++..++.++..+ ++ +++|++.+.
T Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~--~~~A~~~~~ 152 (568)
T 2vsy_A 97 LGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA--LDVLSAQVR 152 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT--HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc--HHHHHHHHH
Confidence 999999999999999999999999999999999999999998 66 677766655
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=1.7e-13 Score=145.94 Aligned_cols=133 Identities=13% Similarity=0.035 Sum_probs=115.2
Q ss_pred CChhHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKY-SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~-~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
..+..+..++.+|..+...|+| ++|+.+|+++++++|+++.+|..+|.+|...|++++|+.+|+++++++|+ ..++.+
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 175 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQN 175 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHH
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHH
Confidence 4566788899999999999999 99999999999999999999999999999999999999999999999988 788999
Q ss_pred HHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------hhhhHHHHhcCCCCC
Q 008730 88 RGAAYLAM---------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV--------KKLKFEEAIAVPESE 144 (556)
Q Consensus 88 lg~~~~~~---------g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~--------~~~~~~~Ai~~~~~~ 144 (556)
+|.+|..+ |++++|+..|+++++++|++..++..++.++... ++ +++|+..+.++
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~--~~~A~~~~~~a 247 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI--SQQALSAYAQA 247 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH--HHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch--HHHHHHHHHHH
Confidence 99999998 9999999999999999999999999999888877 55 66776666533
No 63
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.46 E-value=1.8e-13 Score=113.42 Aligned_cols=106 Identities=22% Similarity=0.240 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRR 88 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l 88 (556)
|..+..+..+|..+...|++++|+..|+++++.+|.+..++.++|.++...|++++|+..++++++.+|. +..+++.+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4556778999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCCCCH
Q 008730 89 GAAYLAM-GKFKEALKDFQQVKKLSPNDP 116 (556)
Q Consensus 89 g~~~~~~-g~~~~A~~~~~~al~l~p~~~ 116 (556)
|.++..+ |++++|++++++++...|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999999998763
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=5.9e-13 Score=141.75 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=123.6
Q ss_pred ChhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------hCHHHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRA---------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL--------EEYGSAIQDAS 72 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~---------g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~--------g~~~~A~~~~~ 72 (556)
+|+ +.++..+|.++... |++++|+..|+++++++|+++.+|.++|.+|..+ |++++|+..|+
T Consensus 167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~ 245 (474)
T 4abn_A 167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA 245 (474)
T ss_dssp CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 344 58899999999999 9999999999999999999999999999999999 99999999999
Q ss_pred HHHHhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 73 KAIEIDP---RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 73 ~al~l~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++++++| +++.+|+++|.+|..+|++++|+..|+++++++|++..++..++.++..+++ +++|++...
T Consensus 246 ~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~--~~eAi~~~~ 316 (474)
T 4abn_A 246 QAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR--LTSLLESKG 316 (474)
T ss_dssp HHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH--HHHHHHHTT
T ss_pred HHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HHHHHHHhc
Confidence 9999999 9999999999999999999999999999999999999999999999999987 788887655
No 65
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=2.4e-12 Score=122.51 Aligned_cols=132 Identities=22% Similarity=0.226 Sum_probs=110.2
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
..|..+..+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+
T Consensus 52 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 131 (243)
T 2q7f_A 52 ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML 131 (243)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34566778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
|.++...|++++|+..++++++..|++..++..++.++...++ +++|+..+.
T Consensus 132 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~ 183 (243)
T 2q7f_A 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM--LDEALSQFA 183 (243)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 8888888888888888888888888888888888888887776 456655544
No 66
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.45 E-value=9.8e-13 Score=135.33 Aligned_cols=131 Identities=17% Similarity=0.146 Sum_probs=111.8
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.|+.+..+..+|..+...|++++|+..|+++++++|++..++..+|.++...|++++|+..|++++.++|+++.++..+|
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence 56677888888888888899999988888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.++...|++++|+..|+++++++|+++.++..++.++...|+ +++|+..+.
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 295 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS--VAEAEDCYN 295 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC--HHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 888888888888888888888888888888888888888777 566665554
No 67
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.45 E-value=8.6e-13 Score=130.42 Aligned_cols=104 Identities=33% Similarity=0.500 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
..+..+..+|..++..|+|++|+..|+++++.+|.++.++.++|.+|..+|++++|+..|+++++++|+++.+++++|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC
Q 008730 92 YLAMGKFKEALKDFQQVKKLSPND 115 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~p~~ 115 (556)
|..+|++++|+..|+++++++|++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999876
No 68
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.45 E-value=1.5e-12 Score=118.51 Aligned_cols=116 Identities=19% Similarity=0.224 Sum_probs=100.1
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhhCH--HHHHHHHHHHHHhCCCChHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA-HTKLEEY--GSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~-~~~~g~~--~~A~~~~~~al~l~p~~~~~~~ 86 (556)
.|..+..+..+|.++...|++++|+.+|+++++++|.++.++..+|.+ +...|++ ++|+..++++++.+|+++.+++
T Consensus 40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 119 (177)
T 2e2e_A 40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119 (177)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHH
Confidence 456678889999999999999999999999999999999999999998 7788888 9999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~ 125 (556)
.+|.++...|++++|+..|+++++++|++......+..+
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 999999999999999999999999999886655444433
No 69
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=3.4e-12 Score=123.91 Aligned_cols=130 Identities=20% Similarity=0.151 Sum_probs=118.3
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
+|..+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 118 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.++...|++++|+..|++++++.|++......++.+ ...++ +++|+..+.
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~--~~~A~~~~~ 168 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD--EKQAKEVLK 168 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC--HHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC--HHHHHHHHH
Confidence 999999999999999999999999998777666654 33344 677766554
No 70
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.44 E-value=1.4e-12 Score=129.80 Aligned_cols=139 Identities=14% Similarity=0.151 Sum_probs=127.6
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.|..+..+..+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|
T Consensus 168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 247 (327)
T 3cv0_A 168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247 (327)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHhhhhHHHHhcCCCCCcccccc
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPN------------DPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVAD 150 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~------------~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~~~~~~~~ 150 (556)
.++..+|++++|+..|++++++.|+ +..++..++.++..+|+ +++|.............
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR--PDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC--HHHHHHHTTCCSHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhcch
Confidence 9999999999999999999999999 78999999999999988 68887777755444333
No 71
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=2.3e-12 Score=120.76 Aligned_cols=132 Identities=19% Similarity=0.142 Sum_probs=123.2
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
..|..+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 89 GAAYLAM-GKFKEALKDFQQVKK--LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 89 g~~~~~~-g~~~~A~~~~~~al~--l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
|.++... |++++|+..++++++ ..|.+..++..++.++...++ +++|+..+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~ 137 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ--FGLAEAYLK 137 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999 999999999999999 667778999999999988887 677776665
No 72
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.44 E-value=1.8e-13 Score=116.16 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=90.2
Q ss_pred HccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 008730 26 RAKKYSQAIDLYSQAIEL---NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (556)
Q Consensus 26 ~~g~~~~Al~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~ 102 (556)
..|++++|+..|++++++ +|.++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Q 008730 103 KDFQQVKKLSPNDPDAAQKVKECE 126 (556)
Q Consensus 103 ~~~~~al~l~p~~~~~~~~l~~~~ 126 (556)
..|+++++..|+++.+......+.
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999988765544443
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.44 E-value=1.8e-12 Score=117.34 Aligned_cols=130 Identities=17% Similarity=0.153 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
...+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++...|++++|+..++++++..|++..++..++.++...++ +++|+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~ 134 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR--FDEAIDSFK 134 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc--HHHHHHHHH
Confidence 99999999999999999999999999999999999988887 677777665
No 74
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.44 E-value=2.2e-13 Score=121.16 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730 32 QAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 32 ~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 111 (556)
.+-..|+++++++|++..+++.+|.++...|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+..|++++++
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 112 SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 112 ~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+|+++.++..++.++..+|+ +++|+..+.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 113 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGE--LAEAESGLF 113 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999988 677776665
No 75
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.44 E-value=8.6e-13 Score=135.76 Aligned_cols=131 Identities=22% Similarity=0.314 Sum_probs=117.0
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
+|+.+..+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|+++.++..+|
T Consensus 199 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 278 (388)
T 1w3b_A 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 56678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.++...|++++|+..|++++++.|++..++..++.++...|+ +++|+..+.
T Consensus 279 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 329 (388)
T 1w3b_A 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN--IEEAVRLYR 329 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999999999999999999999998888777 566665554
No 76
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.44 E-value=1.3e-12 Score=133.15 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
..+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34556788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC--------------------------------------------C--CHHHHHHHHHH
Q 008730 92 YLAMGKFKEALKDFQQVKKLSP--------------------------------------------N--DPDAAQKVKEC 125 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~p--------------------------------------------~--~~~~~~~l~~~ 125 (556)
|..+|++++|+..|++++++.| + ++.++..++.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 8888887777777777766544 3 67788888888
Q ss_pred HHHHhhhhHHHHhcCCC
Q 008730 126 EKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 126 ~~~~~~~~~~~Ai~~~~ 142 (556)
+...++ +++|+..+.
T Consensus 223 ~~~~g~--~~~A~~~~~ 237 (365)
T 4eqf_A 223 FHLSGE--FNRAIDAFN 237 (365)
T ss_dssp HHHHTC--HHHHHHHHH
T ss_pred HHHCCC--HHHHHHHHH
Confidence 887777 566666555
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.43 E-value=1.2e-12 Score=127.29 Aligned_cols=131 Identities=19% Similarity=0.167 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------hhCHHHHHHHHHHHHHhCCC
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTK--------LEEYGSAIQDASKAIEIDPR 80 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~--------~g~~~~A~~~~~~al~l~p~ 80 (556)
..+.+++.+|.+++..|+|++|+..|+++++.+|++ +.+++.+|.++.. .|++++|+..|+++++.+|+
T Consensus 50 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 50 WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 348899999999999999999999999999998854 6789999999999 99999999999999999999
Q ss_pred ChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhh--------h
Q 008730 81 YPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPN---DPDAAQKVKECEKAVKK--------L 132 (556)
Q Consensus 81 ~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l~~~~~~~~~--------~ 132 (556)
++.+. +.+|.+|...|++++|+..|+++++..|+ .+.++..++.++..+|. .
T Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~ 209 (261)
T 3qky_A 130 HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPE 209 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccc
Confidence 87666 89999999999999999999999999998 46789999999988733 2
Q ss_pred hHHHHhcCCC
Q 008730 133 KFEEAIAVPE 142 (556)
Q Consensus 133 ~~~~Ai~~~~ 142 (556)
++++|+..+.
T Consensus 210 ~~~~A~~~~~ 219 (261)
T 3qky_A 210 RYRRAVELYE 219 (261)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3677766655
No 78
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.3e-12 Score=123.54 Aligned_cols=128 Identities=19% Similarity=0.283 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhhCHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIE--------------------------LNSQNAVYYANRAFAHTKLEEYGS 66 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~--------------------------~~p~~~~a~~~lg~~~~~~g~~~~ 66 (556)
.+..+..+|..+...|++++|+..|+++++ .+|.++.++..+|.++...|++++
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 378999999999999999999999999999 667778899999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 67 A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..++.++...++ +++|+..+.
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 231 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE--YASALETLD 231 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888 677766554
No 79
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.43 E-value=8.7e-13 Score=128.19 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----hHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYYRRG 89 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg 89 (556)
.+.++..|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++ .|.+ ..+++.+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999999 4444 44599999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~ 143 (556)
.++...|++++|+..|+++++++|++..++..++.++...++ +++|+..+.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~ 133 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN--FPLAIQYMEK 133 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHGG
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC--HHHHHHHHHH
Confidence 999999999999999999999999999999999999999888 7888888773
No 80
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=2.7e-12 Score=122.22 Aligned_cols=131 Identities=20% Similarity=0.239 Sum_probs=122.6
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.|.....+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|
T Consensus 87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 166 (243)
T 2q7f_A 87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.++...|++++|+..|+++++..|++..++..++.++...++ +++|+..+.
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 217 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN--REKALEMLD 217 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC--HHHHHHHHH
Confidence 999999999999999999999999999999999999998887 455555444
No 81
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.42 E-value=1.1e-12 Score=133.28 Aligned_cols=120 Identities=13% Similarity=0.263 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
.+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHhhh
Q 008730 93 LAMGKFKEALKDFQQVKKLSPND-----------PDAAQKVKECEKAVKKL 132 (556)
Q Consensus 93 ~~~g~~~~A~~~~~~al~l~p~~-----------~~~~~~l~~~~~~~~~~ 132 (556)
..+|++++|+..|++++++.|++ ..++..++.++..+|+.
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 99999999999999999999888 88999999999998884
No 82
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.42 E-value=1.8e-13 Score=139.22 Aligned_cols=121 Identities=25% Similarity=0.402 Sum_probs=97.4
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhhCHHHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----------------VYYANRAFAHTKLEEYGSAIQDAS 72 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-----------------~a~~~lg~~~~~~g~~~~A~~~~~ 72 (556)
.+..+..+..+|..++..|+|++|+..|++++++.|.+. .++.++|.+|.++|+|++|+.+|+
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 466789999999999999999999999999999999887 489999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 73 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+.....
T Consensus 255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998855443
No 83
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=2.9e-12 Score=123.11 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=123.7
Q ss_pred CCChhH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 8 NSSVSR-AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 8 ~~~~~~-a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
..+|.. +..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.+++
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 345665 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKK--LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.+|.++...|++++|++.|+++++ ..|.+..++..++.++...++ +++|+..+.
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 165 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK--PAQAKEYFE 165 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999999999999 888899999999999988887 677776665
No 84
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=5.1e-12 Score=118.43 Aligned_cols=131 Identities=14% Similarity=0.070 Sum_probs=122.4
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-hCHHHHHHHHHHHHH--hCCCChHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-EEYGSAIQDASKAIE--IDPRYPKGYY 86 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~--l~p~~~~~~~ 86 (556)
.|..+..+..+|..+...|++++|+..|+++++.+|.+..++..+|.++... |++++|+..++++++ .+|.+..+++
T Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 117 (225)
T 2vq2_A 38 DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL 117 (225)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHH
T ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHH
Confidence 4556788999999999999999999999999999999999999999999999 999999999999999 6677789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.+|.++...|++++|+..++++++..|++..++..++.++...++ +++|+..+.
T Consensus 118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 171 (225)
T 2vq2_A 118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ--LGDADYYFK 171 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999999999999999999999999999998887 677777665
No 85
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=4.5e-12 Score=121.70 Aligned_cols=131 Identities=21% Similarity=0.172 Sum_probs=123.2
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH--hCCCChHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE--IDPRYPKGYYR 87 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~ 87 (556)
.|..+..+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++ .+|.++.+++.
T Consensus 67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 146 (252)
T 2ho1_A 67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN 146 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHH
Confidence 4566789999999999999999999999999999999999999999999999999999999999999 88999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+|.++...|++++|+..|+++++..|.+..++..++.++...++ +++|+..+.
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 199 (252)
T 2ho1_A 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE--YVPARQYYD 199 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999999999999999999998887 677766655
No 86
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.40 E-value=3.7e-12 Score=126.91 Aligned_cols=131 Identities=16% Similarity=0.039 Sum_probs=107.8
Q ss_pred ChhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g-~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
.|..+..+..+|..+...| ++++|+..|+++++.+|.++.+|..+|.++...|++++|+..++++++.+|++..+++.+
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 165 (330)
T 3hym_B 86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165 (330)
T ss_dssp CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4556677888888888888 888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
|.++...|++++|+..++++++..|++..++..++.++...++ +++|+..+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~ 217 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE--WKTAEKWFL 217 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc--HHHHHHHHH
Confidence 8888888888888888888888888888888888888887776 566655554
No 87
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.40 E-value=3.6e-12 Score=126.95 Aligned_cols=130 Identities=17% Similarity=0.083 Sum_probs=81.1
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.|..+..+..+|..+...|++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++.+|+++.+++.+|
T Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 200 (330)
T 3hym_B 121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG 200 (330)
T ss_dssp CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34445566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLS---------PNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~---------p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
.++...|++++|+..++++++.. |....++..++.++...++ +++|+..+
T Consensus 201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~ 259 (330)
T 3hym_B 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK--YAEALDYH 259 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC--HHHHHHHH
Confidence 66666666666666666666654 4445566666666655555 34444433
No 88
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.40 E-value=8.4e-13 Score=130.89 Aligned_cols=130 Identities=18% Similarity=0.067 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
|.....+..+|..+...|++++|+..|+++++.+|+++.++..+|.++.+.|++++|+..+++++..+|+....+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 55678899999999999999999999999999999999999999999999999999999999999999987777777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.+...++.++|+..|+++++.+|++..++..++.++...|+ +++|+..+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~--~~~A~~~l~ 243 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR--NEEALELLF 243 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence 88889999999999999999999999999999999988887 677777665
No 89
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.40 E-value=2.6e-12 Score=130.81 Aligned_cols=120 Identities=14% Similarity=0.282 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
.+..+..+|..+...|++++|+..|+++++.+|.++.+|.++|.++...|++++|+..|+++++++|+++.+++.+|.+|
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHhhh
Q 008730 93 LAMGKFKEALKDFQQVKKLSPN------------DPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 93 ~~~g~~~~A~~~~~~al~l~p~------------~~~~~~~l~~~~~~~~~~ 132 (556)
..+|++++|+..|++++++.|+ +..++..++.++..+++.
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 7777777777777777777765 245667777777777664
No 90
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.39 E-value=4.7e-12 Score=121.39 Aligned_cols=117 Identities=27% Similarity=0.435 Sum_probs=112.3
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
..|..+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 213 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 213 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKEC 125 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~l~~~ 125 (556)
|.++..+|++++|+..|+++++++ |++..++..++.+
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999999999 9988888877765
No 91
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.39 E-value=3.3e-13 Score=123.30 Aligned_cols=129 Identities=14% Similarity=0.006 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
+...+.+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 344566889999999999999999999999999999999999999999999999999999999999999 8877766665
Q ss_pred HHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 91 AYL-AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 91 ~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+.. ..++..+|+..++++++++|+++.++..++.++...|+ +++|+..+.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~--~~~A~~~~~ 132 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR--DEEALELLW 132 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence 533 33444568999999999999999999999999998887 677777665
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.39 E-value=2.4e-12 Score=122.59 Aligned_cols=128 Identities=19% Similarity=0.209 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH---HHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK---GYY 86 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~ 86 (556)
.+..++.+|..++..|+|++|+..|+++++..|.+ ..+++.+|.++.++|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46789999999999999999999999999999987 478999999999999999999999999999999864 899
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHH-----------------HHHHHHHHHhh
Q 008730 87 RRGAAYLA------------------MGKFKEALKDFQQVKKLSPNDPDAAQ-----------------KVKECEKAVKK 131 (556)
Q Consensus 87 ~lg~~~~~------------------~g~~~~A~~~~~~al~l~p~~~~~~~-----------------~l~~~~~~~~~ 131 (556)
.+|.++.. .|++++|+..|+++++..|+++.+.. .++.++...++
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999987 57899999999999999999976542 34445555554
Q ss_pred hhHHHHhcCCC
Q 008730 132 LKFEEAIAVPE 142 (556)
Q Consensus 132 ~~~~~Ai~~~~ 142 (556)
+++|+..++
T Consensus 163 --~~~A~~~~~ 171 (225)
T 2yhc_A 163 --WVAVVNRVE 171 (225)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHH
Confidence 666666555
No 93
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.38 E-value=1.6e-12 Score=118.34 Aligned_cols=120 Identities=12% Similarity=0.105 Sum_probs=107.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHcCCH-
Q 008730 21 ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA-YLAMGKF- 98 (556)
Q Consensus 21 g~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~-~~~~g~~- 98 (556)
+..+...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|+++++++|+++.+++.+|.+ +...|++
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 99 -KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 99 -~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++|+..|+++++.+|++..++..++.++...++ +++|+..+.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~ 139 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQAN--YAQAIELWQ 139 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence 999999999999999999999999999999887 677776665
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.38 E-value=4.3e-13 Score=149.33 Aligned_cols=120 Identities=10% Similarity=-0.054 Sum_probs=113.8
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
+|+.+.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++.++|++++ +..|++|++++|+++.+++++|
T Consensus 463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA 541 (681)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence 567789999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
.+|..+|++++|++.|+++++++|++..++..++.++...+
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999875544
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.38 E-value=3.1e-12 Score=121.71 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------hhCHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV---YYANRAFAHTK------------------LEEYGSAIQ 69 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~---a~~~lg~~~~~------------------~g~~~~A~~ 69 (556)
+....+++.+|.+++..|+|++|+..|+++++.+|+++. +++.+|.++.. .|++++|+.
T Consensus 38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence 445678999999999999999999999999999999864 89999999987 578999999
Q ss_pred HHHHHHHhCCCChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHH
Q 008730 70 DASKAIEIDPRYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAV 129 (556)
Q Consensus 70 ~~~~al~l~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~ 129 (556)
.|+++++.+|+++.++ +.+|.+|...|++++|+..|+++++..|+++ .++..++.++..+
T Consensus 118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM 197 (225)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence 9999999999987654 6789999999999999999999999999986 6799999999999
Q ss_pred hhhhHHHHhcCCC
Q 008730 130 KKLKFEEAIAVPE 142 (556)
Q Consensus 130 ~~~~~~~Ai~~~~ 142 (556)
|+ +++|++..+
T Consensus 198 g~--~~~A~~~~~ 208 (225)
T 2yhc_A 198 QM--NAQAEKVAK 208 (225)
T ss_dssp TC--HHHHHHHHH
T ss_pred CC--cHHHHHHHH
Confidence 98 577766554
No 96
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.38 E-value=3.6e-12 Score=128.26 Aligned_cols=128 Identities=22% Similarity=0.336 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
+++.++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHHhhhhHHHHhcCCC
Q 008730 93 LAMGKFKEALKDFQQVKKLSP---NDPDAAQKV------------KECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 93 ~~~g~~~~A~~~~~~al~l~p---~~~~~~~~l------------~~~~~~~~~~~~~~Ai~~~~ 142 (556)
...|++++|+..|+++++.+| ++..++..+ +.++...++ +++|+..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~ 144 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD--YTAAITFLD 144 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHH
Confidence 999999999999999999999 888888877 455555555 677766665
No 97
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.37 E-value=1.6e-12 Score=114.33 Aligned_cols=106 Identities=13% Similarity=0.146 Sum_probs=97.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730 35 DLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (556)
Q Consensus 35 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 114 (556)
..|+++++++|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 115 DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 115 ~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++.++..++.++..+|+ +++|+..+.
T Consensus 85 ~~~~~~~lg~~~~~~g~--~~~A~~~~~ 110 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGD--LDGAESGFY 110 (142)
T ss_dssp CTHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999988 677777665
No 98
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.36 E-value=1.5e-11 Score=124.85 Aligned_cols=100 Identities=10% Similarity=0.134 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 93 (556)
+..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred HcCCHHHHHHHHHHHHHhCC
Q 008730 94 AMGKFKEALKDFQQVKKLSP 113 (556)
Q Consensus 94 ~~g~~~~A~~~~~~al~l~p 113 (556)
..|++++|+..|++++++.|
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTST
T ss_pred HcCCHHHHHHHHHHHHHhCc
Confidence 77777777666666555444
No 99
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.35 E-value=1.2e-11 Score=124.52 Aligned_cols=132 Identities=13% Similarity=0.068 Sum_probs=123.3
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC---CChHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP---RYPKGY 85 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p---~~~~~~ 85 (556)
..|..+..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+| +++.++
T Consensus 32 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 111 (359)
T 3ieg_A 32 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999 888888
Q ss_pred HHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 86 YRR------------GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 86 ~~l------------g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..+ |.++...|++++|+..++++++..|+++.++..++.++...++ +++|+..+.
T Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~ 178 (359)
T 3ieg_A 112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE--PRKAISDLK 178 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 887 7999999999999999999999999999999999999999887 677776655
No 100
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.35 E-value=1.6e-11 Score=114.90 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh----------
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---------- 82 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---------- 82 (556)
.+..+..+|.++...|++++|+..|+++++.+|.++.++.++|.++..+|++++|+..|++++++.|++.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 4679999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008730 83 ------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (556)
Q Consensus 83 ------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 117 (556)
.+++++|.++..+|++++|+..|++++++.|++..
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999999999999999998754
No 101
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.34 E-value=2e-11 Score=127.69 Aligned_cols=134 Identities=22% Similarity=0.332 Sum_probs=119.1
Q ss_pred CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
-..+|..+..+..+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|+++.+++
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHH------------HHHHHHhhhhHHHHhcCCC
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVK------------ECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~------------~~~~~~~~~~~~~Ai~~~~ 142 (556)
.+|.+|..+|++++|+..|+++++++|++. .++..++ .++...++ +++|+..+.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~ 167 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD--YTAAIAFLD 167 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999999999999999988 7776664 33555554 667766655
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.32 E-value=6.2e-12 Score=114.74 Aligned_cols=124 Identities=14% Similarity=0.105 Sum_probs=110.4
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHT-KLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
..+|+.+.++..+|.++...|++++|+..|+++++.+| ++..+..++.+.. ..++..+|+..++++++.+|+++.+++
T Consensus 34 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~ 112 (176)
T 2r5s_A 34 DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELAC 112 (176)
T ss_dssp HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHH
Confidence 45688899999999999999999999999999999999 8887776665533 334555689999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhh
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKL 132 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~~ 132 (556)
.+|.++...|++++|+..|+++++.+|+. ..++..++.++..+|+.
T Consensus 113 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 113 ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999976 56999999999998873
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.31 E-value=1e-11 Score=123.08 Aligned_cols=124 Identities=11% Similarity=-0.019 Sum_probs=117.2
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
.+|+.+.++..+|.++...|++++|+..|+++++.+|+....+...+..+...++.++|+..++++++.+|+++.+++.+
T Consensus 146 ~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~l 225 (287)
T 3qou_A 146 LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQL 225 (287)
T ss_dssp HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHH
Confidence 46778899999999999999999999999999999998777788888889999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhh
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKL 132 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~~ 132 (556)
|.+|...|++++|+..|+++++.+|++ ..++..++.++..+|+.
T Consensus 226 a~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 226 ALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 999999999999999999999999998 88999999999998873
No 104
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=8.5e-12 Score=123.81 Aligned_cols=129 Identities=16% Similarity=0.050 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHh-hCHHHHHHHHHHHHHhCCCC---
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKL-EEYGSAIQDASKAIEIDPRY--- 81 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~--- 81 (556)
..+.++.++|.++...|++++|+.+|++|+++.|.. +.++.++|.+|... |++++|+.+|++|+++.|..
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 346778888888888888888888888888877643 45777888888885 88888888888888877654
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-------AAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 82 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-------~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..++.++|.++..+|++++|+..|++++++.|++.. ++..++.++..+|+ +++|+..+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 223 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD--AVAAARTLQ 223 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 456778888888888888888888888888776543 45667777777666 566666555
No 105
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.31 E-value=2.2e-11 Score=118.20 Aligned_cols=116 Identities=15% Similarity=0.104 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
|..+..+..+|.++...|++++|+..|+++++ .|.+ ..++..+|.++...|++++|+..|+++++.+|.++.++.
T Consensus 34 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 112 (272)
T 3u4t_A 34 YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG 112 (272)
T ss_dssp CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHH
Confidence 34445666666666677777777777776666 3322 334666676666677777777777777777666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH
Q 008730 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK-ECEK 127 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~-~~~~ 127 (556)
.+|.++..+|++++|+..|+++++++|.++.++..++ .++.
T Consensus 113 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 7777777777777777777777666666666666666 4443
No 106
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.30 E-value=3.8e-11 Score=119.24 Aligned_cols=121 Identities=10% Similarity=0.011 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA--FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg--~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
|....++..+|.++...|++++|+..|+++++.+|++.......+ ..+...|++++|+..|+++++.+|+++.+++.+
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l 206 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 455678888888888889999999999999988888764433333 223334788999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
|.++..+|++++|+..|+++++++|+++.++.+++.++...|+
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999988888776
No 107
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.29 E-value=5.3e-11 Score=101.29 Aligned_cols=106 Identities=32% Similarity=0.540 Sum_probs=100.8
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.|.....+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.++.+++.+|
T Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 110 (136)
T 2fo7_A 31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110 (136)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPND 115 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~ 115 (556)
.++...|++++|+..++++++.+|++
T Consensus 111 ~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 111 NAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999863
No 108
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.28 E-value=4.5e-11 Score=100.56 Aligned_cols=101 Identities=11% Similarity=0.199 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008730 31 SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (556)
Q Consensus 31 ~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 110 (556)
++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHHhh
Q 008730 111 LSPN--DPDAAQKVKECEKAVKK 131 (556)
Q Consensus 111 l~p~--~~~~~~~l~~~~~~~~~ 131 (556)
+.|. +..+...+......+++
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 9884 45666666666666655
No 109
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.28 E-value=2.8e-12 Score=106.58 Aligned_cols=94 Identities=31% Similarity=0.386 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------hHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------PKGYY 86 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~ 86 (556)
.+..+..+|..++..|+|++|+..|+++++++|.++.++.++|.++..+|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 355666666666666666666666666666666666666666666666666666666666666666666 66666
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 008730 87 RRGAAYLAMGKFKEALKDFQ 106 (556)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~ 106 (556)
.+|.++..+|++++|+..++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 66666666665555554443
No 110
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.28 E-value=3e-11 Score=103.31 Aligned_cols=96 Identities=22% Similarity=0.254 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008730 45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (556)
Q Consensus 45 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 124 (556)
|..+..+..+|..++..|+|++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHhcCCC
Q 008730 125 CEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 125 ~~~~~~~~~~~~Ai~~~~ 142 (556)
++..+++ +++|+..+.
T Consensus 81 ~~~~~~~--~~~A~~~~~ 96 (126)
T 3upv_A 81 AQIAVKE--YASALETLD 96 (126)
T ss_dssp HHHHTTC--HHHHHHHHH
T ss_pred HHHHHhC--HHHHHHHHH
Confidence 9999888 677776665
No 111
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=1.9e-11 Score=118.59 Aligned_cols=132 Identities=21% Similarity=0.228 Sum_probs=119.7
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--- 77 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--- 77 (556)
..|..+..+..+|..+...|++++|+..|++++++. |....++.++|.++...|++++|+..|++++.+
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999883 666789999999999999999999999999998
Q ss_pred -----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 78 -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL--------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 78 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+|....++.++|.++..+|++++|+..|++++++ .|....++..++.++...++ +++|+..+.
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 193 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK--YQDAETLYK 193 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 5777889999999999999999999999999999 67777889999999999888 677766665
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.28 E-value=1.4e-11 Score=133.90 Aligned_cols=114 Identities=17% Similarity=0.147 Sum_probs=91.1
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 008730 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (556)
Q Consensus 27 ~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 106 (556)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++++|.+|..+|++++|++.|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 107 QVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 107 ~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++++++|++..++..++.++...++ +++|++.++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~ 115 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQ--AEAAAAAYT 115 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999999999999888 677777665
No 113
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.27 E-value=3.1e-11 Score=129.20 Aligned_cols=127 Identities=21% Similarity=0.260 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 93 (556)
...+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..|++++|+..|+++++..|+++.++..++.++...++ +++|+..+.
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 402 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD--FDTAIKQYD 402 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 66666666666666666666666666666666666555 455544443
No 114
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.26 E-value=6.3e-11 Score=123.86 Aligned_cols=118 Identities=13% Similarity=0.166 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR------------AFAHTKLEEYGSAIQDASKAIEIDPRY 81 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~al~l~p~~ 81 (556)
+..+..+|..+...|++++|+..|+++++.+|++..++..+ |.++...|++++|+..|+++++++|++
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~ 290 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI 290 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Confidence 34444444444455555555555555555444444444333 444444455555555555555544444
Q ss_pred h----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 82 P----KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 82 ~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
+ .++..+|.++...|++++|+..++++++++|++..++..++.++...++
T Consensus 291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM 344 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 2 2444445555555555555555555555555555555555555444444
No 115
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.26 E-value=1.9e-11 Score=118.54 Aligned_cols=118 Identities=18% Similarity=0.094 Sum_probs=109.1
Q ss_pred HHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 008730 23 EAFRAKKYSQAIDLYSQAIELN----SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF 98 (556)
Q Consensus 23 ~~~~~g~~~~Al~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 98 (556)
.+...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3445689999999999999984 566889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 99 ~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++|+..|+++++++|++..++..++.++...++ +++|+..+.
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 135 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--DKLAQDDLL 135 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence 999999999999999999999999999999887 677777665
No 116
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.24 E-value=1.2e-10 Score=126.51 Aligned_cols=131 Identities=17% Similarity=0.081 Sum_probs=115.3
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.|..+..+..+|..+.+.|++++|+..|+++++.+|.+..+|..+|.+|.+.|++++|++.|+++++.+|++..++..+|
T Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 448 (597)
T 2xpi_A 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448 (597)
T ss_dssp CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 35567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.+|...|++++|++.|+++++..|+++.++..++.++...|+ +++|++.+.
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 499 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD--MQTAINHFQ 499 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 999999999999999999999999999999999988888877 677776665
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.24 E-value=5.1e-12 Score=128.23 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=108.3
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHH
Q 008730 26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---------------PKGYYRRGA 90 (556)
Q Consensus 26 ~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~ 90 (556)
..+++++|+..|+++++.+|..+.++.++|.++.+.|+|++|+..|+++++++|++ ..+++++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+|..+|++++|+.+|+++++++|++..++..++.++..+++ +++|+..+.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~ 254 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND--FELARADFQ 254 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 99999999999999999999999999999999999999988 788877766
No 118
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.24 E-value=5.4e-11 Score=129.30 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=98.0
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.|.....|..+|..+...|++++|++.|+++++..|.+..++..+|.+|.+.|++++|++.|+++++.+|.++.+|..+|
T Consensus 403 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 482 (597)
T 2xpi_A 403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG 482 (597)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34556677777777888888888888888877777777777777777777777888888888877777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 90 AAYLAMGKFKEALKDFQQVKKL------SPND-PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~l------~p~~-~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.+|...|++++|++.|+++++. +|++ ..++..++.++...|+ +++|++.++
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 540 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM--YDAAIDALN 540 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 7777777788888777777777 4544 5677777777777766 455555544
No 119
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.23 E-value=4.5e-11 Score=103.01 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HH
Q 008730 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-------AA 119 (556)
Q Consensus 47 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-------~~ 119 (556)
.+.++.++|.++++.|+|++|+..|++|++++|+++.+|.++|.+|..+|++++|+..|+++++++|++.. ++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999987753 56
Q ss_pred HHHHHHHHHHhhhhHHHHhcCCC
Q 008730 120 QKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 120 ~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..+|.++..+++ +++|++.++
T Consensus 87 ~~lg~~~~~~~~--~~~A~~~~~ 107 (127)
T 4gcn_A 87 SRAGNAFQKQND--LSLAVQWFH 107 (127)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHcCC--HHHHHHHHH
Confidence 666666666665 677766654
No 120
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.23 E-value=4.7e-11 Score=107.34 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730 44 NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (556)
Q Consensus 44 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 123 (556)
++.++.++..+|.++...|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHhcCCC
Q 008730 124 ECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 124 ~~~~~~~~~~~~~Ai~~~~ 142 (556)
.++..+++ +++|+..+.
T Consensus 87 ~~~~~~g~--~~~A~~~~~ 103 (164)
T 3sz7_A 87 LARFDMAD--YKGAKEAYE 103 (164)
T ss_dssp HHHHHTTC--HHHHHHHHH
T ss_pred HHHHHccC--HHHHHHHHH
Confidence 99999988 678777665
No 121
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.23 E-value=4.2e-11 Score=102.33 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (556)
Q Consensus 50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 129 (556)
.++.+|.++.+.|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhHHHHhcCCC
Q 008730 130 KKLKFEEAIAVPE 142 (556)
Q Consensus 130 ~~~~~~~Ai~~~~ 142 (556)
|+ +++|+..+.
T Consensus 99 g~--~~~A~~~~~ 109 (121)
T 1hxi_A 99 HN--ANAALASLR 109 (121)
T ss_dssp HH--HHHHHHHHH
T ss_pred CC--HHHHHHHHH
Confidence 88 677766654
No 122
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=6.3e-11 Score=118.32 Aligned_cols=131 Identities=14% Similarity=0.007 Sum_probs=118.7
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
.|+....|..+|..+...|++++|...|+++++++|.++. +|.++|.++.+.|++++|+..|+++++.+|.+..+|...
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 174 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6777889999999999999999999999999999999987 999999999999999999999999999999999888877
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 89 GAAYLA-MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 89 g~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+..... .|++++|++.|+++++..|+++.++..++..+...|+ +++|...++
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~--~~~A~~~~~ 227 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE--DNNTRVLFE 227 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 766544 7999999999999999999999999999999887776 566666655
No 123
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.23 E-value=8.6e-11 Score=116.63 Aligned_cols=124 Identities=17% Similarity=0.087 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH-
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG- 89 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg- 89 (556)
|+.+..++.+|..+...|++++|+..|++ |.+..++..+|.++.++|++++|+..++++++.+|++.......+
T Consensus 98 P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~ 172 (291)
T 3mkr_A 98 VTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 172 (291)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHH
Confidence 44444555555555555555555555554 455555555555555555555555555555555555432222222
Q ss_pred -HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 90 -AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 90 -~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
..+...|++++|+..|+++++..|+++.++..++.++..+|+ +++|.+.+
T Consensus 173 ~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~eA~~~l 223 (291)
T 3mkr_A 173 VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR--WEAAEGVL 223 (291)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred HHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence 111122455555555555555555555555555555555554 34444433
No 124
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.22 E-value=2.2e-11 Score=129.31 Aligned_cols=118 Identities=16% Similarity=0.097 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
|.....+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 380 (514)
T 2gw1_A 301 SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAE 380 (514)
T ss_dssp TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHH
Confidence 44455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSPNDPD------AAQKVKECEKA 128 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p~~~~------~~~~l~~~~~~ 128 (556)
++...|++++|+..|+++++..|+++. ++..++.++..
T Consensus 381 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 381 ILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 666666666666666666666665543 56666666555
No 125
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.22 E-value=1.6e-10 Score=92.12 Aligned_cols=85 Identities=32% Similarity=0.433 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
..+..+..+|..+...|++++|+..|+++++.+|.++.++.++|.++...|++++|+..++++++++|+++.++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777777776
Q ss_pred HHHcC
Q 008730 92 YLAMG 96 (556)
Q Consensus 92 ~~~~g 96 (556)
+..+|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 66543
No 126
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.22 E-value=5.1e-11 Score=118.37 Aligned_cols=118 Identities=17% Similarity=0.218 Sum_probs=112.4
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 008730 23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (556)
Q Consensus 23 ~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~ 102 (556)
.+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 103 KDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 103 ~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..|+++++..|++..++..++.++...++ +++|+..+.
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 264 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQ--YDLAAKQLV 264 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence 99999999999999999999999998887 677776665
No 127
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.21 E-value=2.3e-10 Score=121.45 Aligned_cols=105 Identities=30% Similarity=0.470 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 90 (556)
...+..+..+|..++..|+|++|+..|+++++.+| ++.++..+|.++.+.|++++|+..++++++++|+++.+++.+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 46789999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSPNDP 116 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p~~~ 116 (556)
++..+|++++|+..|+++++..|.+.
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 107 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFND 107 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCG
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999998553
No 128
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=5.2e-11 Score=118.05 Aligned_cols=130 Identities=19% Similarity=0.121 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH--
Q 008730 13 RAEELKALANEAFRA-KKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK-- 83 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~-g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-- 83 (556)
.+..+..+|.++... |++++|+.+|++|+++.|.. ..++.++|.++.++|+|++|+..|+++++++|++..
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence 467899999999996 99999999999999998865 567999999999999999999999999999988653
Q ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHhhhhHHHHhcCCC
Q 008730 84 -----GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA-----QKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 84 -----~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~-----~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+++++|.++..+|++++|+.+|+++++++|+...+. ..+...+......++++|+..+.
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 689999999999999999999999999999876643 23333333222233677766654
No 129
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.21 E-value=3.1e-11 Score=107.31 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-------ChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008730 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-------YPK-----GYYRRGAAYLAMGKFKEALKDFQQVKKL---- 111 (556)
Q Consensus 48 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 111 (556)
+..+.++|..+.+.|+|++|+..|++|++++|+ +.. +|.++|.++..+|++++|+.+|++|+++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 566889999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHHhhhhHHHHhcCCCCC
Q 008730 112 ---SPNDPDAA----QKVKECEKAVKKLKFEEAIAVPESE 144 (556)
Q Consensus 112 ---~p~~~~~~----~~l~~~~~~~~~~~~~~Ai~~~~~~ 144 (556)
+|++..+| ++++.++..+++ +++|+..++++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr--~eEAl~~y~kA 128 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFKKV 128 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCC--HHHHHHHHHHH
Confidence 99999999 999999999998 78888877733
No 130
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=6.1e-11 Score=114.88 Aligned_cols=104 Identities=23% Similarity=0.248 Sum_probs=97.6
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-- 77 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-- 77 (556)
...+..+..+..+|.++...|++++|+.+|+++++. +|....++.++|.++..+|++++|+..+++++++
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 446788999999999999999999999999999998 4777889999999999999999999999999999
Q ss_pred ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730 78 ------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 78 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 111 (556)
+|....++..+|.++..+|++++|+..+++++++
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777889999999999999999999999999987
No 131
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.21 E-value=8.3e-11 Score=125.83 Aligned_cols=126 Identities=25% Similarity=0.317 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 93 (556)
+.++..+|..+...|++++|+..|+++++.+|. ..++..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 94 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..|++++|+..|+++++++|++..++..++.++...++ +++|+..+.
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 368 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK--FTESEAFFN 368 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999999999999999888 677777665
No 132
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.19 E-value=2.7e-10 Score=98.33 Aligned_cols=99 Identities=22% Similarity=0.258 Sum_probs=91.5
Q ss_pred HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730 42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (556)
Q Consensus 42 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 121 (556)
..+|.++..+..+|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..++++++++|+++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHhcCCC
Q 008730 122 VKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 122 l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++.++..+++ +++|+..+.
T Consensus 83 l~~~~~~~~~--~~~A~~~~~ 101 (137)
T 3q49_B 83 LGQCQLEMES--YDEAIANLQ 101 (137)
T ss_dssp HHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHhh--HHHHHHHHH
Confidence 9999999888 677766665
No 133
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=3.5e-10 Score=119.15 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=107.1
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL---------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-- 78 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-- 78 (556)
.+..+..+..+|.++...|++++|+++|++|+++ +|....+|.++|.+|..+|++++|+.++++++++.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445678889999999999999999999999987 67788999999999999999999999999999873
Q ss_pred ------CCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 79 ------PRYPKGYYRRGAAYLAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 79 ------p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
+..+.++.++|.++...| ++++|+.+|++|++++|+++.++..++.+...++.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN 187 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 456789999998887764 69999999999999999999999999988777654
No 134
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.18 E-value=5e-10 Score=109.14 Aligned_cols=125 Identities=16% Similarity=0.237 Sum_probs=112.6
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~ 85 (556)
+|..+.+++.+|..+...|++++|+.+|+++++ |.++.+++.+|.++.. .+++++|+.+|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 456788999999999999999999999999999 8889999999999999 999999999999999986 79999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhhhHHHHhcCCC
Q 008730 86 YRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE 142 (556)
Q Consensus 86 ~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~----~~~~~~~~Ai~~~~ 142 (556)
+.+|.+|.. .+++++|+.+|+++++.+ ++.++..++.++.. .++ +++|+..+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~--~~~A~~~~~ 138 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRD--FKKAVEYFT 138 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCC--HHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccC--HHHHHHHHH
Confidence 999999999 999999999999999984 89999999999987 655 677766655
No 135
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.1e-10 Score=96.82 Aligned_cols=94 Identities=16% Similarity=0.240 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 008730 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQ 120 (556)
Q Consensus 47 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~ 120 (556)
++.++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 88889
Q ss_pred HHHHHHHHHhhhhHHHHhcCCC
Q 008730 121 KVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 121 ~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.++.++..++. +++|+..++
T Consensus 83 ~~~~~~~~~~~--~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGS--VQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHC--CCCCSSSSS
T ss_pred HHHHHHHHHHh--HhhhHhHHH
Confidence 99999888885 455554443
No 136
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.17 E-value=1.3e-10 Score=116.12 Aligned_cols=131 Identities=15% Similarity=0.056 Sum_probs=114.0
Q ss_pred ChhHHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730 10 SVSRAEELKALANEAFR-------AKKY-------SQAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~-------~g~~-------~~Al~~~~~al~-~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 74 (556)
.|..+..|+.+|..+.. .|++ ++|+..|++|++ ++|++..+|..+|.++...|++++|+..|+++
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 46778899999998874 5885 999999999999 79999999999999999999999999999999
Q ss_pred HHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HhhhhHHHHhcCCC
Q 008730 75 IEIDPRYPK-GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA-VKKLKFEEAIAVPE 142 (556)
Q Consensus 75 l~l~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~-~~~~~~~~Ai~~~~ 142 (556)
++++|.++. +|..+|.++...|++++|+..|++|++..|.+..++...+..... .++ +++|+..++
T Consensus 126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~--~~~A~~~~~ 193 (308)
T 2ond_A 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFE 193 (308)
T ss_dssp HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC--HHHHHHHHH
T ss_pred HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999987 999999999999999999999999999999998887665555332 343 566665554
No 137
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.16 E-value=8.6e-11 Score=115.84 Aligned_cols=136 Identities=19% Similarity=0.177 Sum_probs=120.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (556)
Q Consensus 6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 77 (556)
....+|..+..+..+|..+...|++++|+..|++++++ .|....++..+|.++...|++++|+..+++++.+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999995 6777889999999999999999999999999988
Q ss_pred --------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 78 --------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--------PNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 78 --------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
+|....++..+|.++...|++++|+..|++++++. |....++..++.++...++ +++|+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~ 176 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK--YEEVEYYY 176 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence 45668899999999999999999999999999984 5556778889999888877 67777766
Q ss_pred CC
Q 008730 142 ES 143 (556)
Q Consensus 142 ~~ 143 (556)
.+
T Consensus 177 ~~ 178 (311)
T 3nf1_A 177 QR 178 (311)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 138
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.15 E-value=3.5e-10 Score=90.03 Aligned_cols=84 Identities=30% Similarity=0.497 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008730 46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (556)
Q Consensus 46 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~ 125 (556)
.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 008730 126 EKAV 129 (556)
Q Consensus 126 ~~~~ 129 (556)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.14 E-value=4.1e-11 Score=98.96 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=91.3
Q ss_pred hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Q 008730 43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQ 120 (556)
Q Consensus 43 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~ 120 (556)
++|+++.++..+|.++...|++++|+..++++++.+|.+..+++.+|.++..+|++++|+..|+++++..|+ +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHH-hhhhHHHHhcCCC
Q 008730 121 KVKECEKAV-KKLKFEEAIAVPE 142 (556)
Q Consensus 121 ~l~~~~~~~-~~~~~~~Ai~~~~ 142 (556)
.++.++..+ ++ +++|++...
T Consensus 81 ~l~~~~~~~~~~--~~~A~~~~~ 101 (112)
T 2kck_A 81 AKADALRYIEGK--EVEAEIAEA 101 (112)
T ss_dssp HHHHHHTTCSSC--SHHHHHHHH
T ss_pred HHHHHHHHHhCC--HHHHHHHHH
Confidence 999999888 87 567766554
No 140
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.14 E-value=8.4e-11 Score=95.83 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=77.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 008730 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (556)
Q Consensus 17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 95 (556)
.+.+|..++..|++++|+..|+++++.+|.++. +++++|.++..+|++++|+..|+++++++|+++.++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 356788888999999999999999999999988 99999999999999999999999999999988887754
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 008730 96 GKFKEALKDFQQVKKLSPNDP 116 (556)
Q Consensus 96 g~~~~A~~~~~~al~l~p~~~ 116 (556)
+.+.+|+..|++++..+|++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 567788888888887777653
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.14 E-value=5e-10 Score=99.65 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=93.0
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.|..+..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|.+..++..++
T Consensus 43 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 122 (166)
T 1a17_A 43 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122 (166)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999885555
Q ss_pred HH--HHHcCCHHHHHHHHHHHHHh
Q 008730 90 AA--YLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 90 ~~--~~~~g~~~~A~~~~~~al~l 111 (556)
.+ +...|++++|+..++++..+
T Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 123 ECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccchHHH
Confidence 54 88899999999999877554
No 142
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.13 E-value=2.3e-10 Score=117.61 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=110.1
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 81 (556)
..+..+.++..+|..+...|++++|+.++++|+++.+. .+.++.++|.+|..+|++++|+..|++++++.+..
T Consensus 138 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 217 (383)
T 3ulq_A 138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE 217 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence 34557888999999999999999999999999988543 34688899999999999999999999999885543
Q ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 82 ------PKGYYRRGAAYLAMGKFKEALKDFQQVKK-----LS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 82 ------~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----l~-p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..++.++|.+|..+|++++|+.+|+++++ .+ |....++..++.++..+|+ +++|+..+.
T Consensus 218 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 288 (383)
T 3ulq_A 218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK--IDKAHEYHS 288 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 25889999999999999999999999999 45 7778888999999888887 677766655
No 143
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.12 E-value=3e-10 Score=99.93 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=110.4
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-- 81 (556)
.+..+..+..+|..+...|++++|+.++++++++.+.. ..++..+|.++...|++++|+..+++++++.+..
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 34567899999999999999999999999999986543 2588999999999999999999999999876543
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 82 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..++..+|.++...|++++|+..+++++++.+.. ..++..++.++...++ +++|+....
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 153 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC--HHHHHHHHH
Confidence 6689999999999999999999999999884322 4567788888888877 566655544
No 144
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.12 E-value=2.1e-11 Score=129.09 Aligned_cols=115 Identities=14% Similarity=0.153 Sum_probs=107.3
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHH
Q 008730 26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---------------PKGYYRRGA 90 (556)
Q Consensus 26 ~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~ 90 (556)
..+++++|+..|+++++.+|..+.++.++|.++++.|+|++|+..|++|++++|.+ ..+|+++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+|..+|++++|+.+|++|++++|++..+++.++.++..+++ +++|+..+.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~--~~~A~~~~~ 375 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE--FESAKGDFE 375 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC--HHHHHHHHH
Confidence 99999999999999999999999999999999999999988 678877766
No 145
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=2.4e-10 Score=112.58 Aligned_cols=132 Identities=23% Similarity=0.253 Sum_probs=118.6
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-- 78 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-- 78 (556)
..+..+..+..+|..+...|++++|+.+|+++++. .|....++..+|.++...|++++|+..+++++++.
T Consensus 64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999998 35667899999999999999999999999999884
Q ss_pred ------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 79 ------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL--------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 79 ------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
|....++..+|.++...|++++|+..|++++++ .|....++..++.++...++ +++|+..+.
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 219 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK--FKQAETLYK 219 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 556789999999999999999999999999998 66677889999999998888 677766665
No 146
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.12 E-value=5.5e-10 Score=91.69 Aligned_cols=88 Identities=16% Similarity=0.277 Sum_probs=71.9
Q ss_pred hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Q 008730 43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQ 120 (556)
Q Consensus 43 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~ 120 (556)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|. +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999999998764 344455
Q ss_pred HHHHHHHHHh
Q 008730 121 KVKECEKAVK 130 (556)
Q Consensus 121 ~l~~~~~~~~ 130 (556)
.+...+...+
T Consensus 82 ~l~~~l~~~~ 91 (100)
T 3ma5_A 82 ELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcc
Confidence 5555544433
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.11 E-value=4.6e-11 Score=110.97 Aligned_cols=123 Identities=15% Similarity=0.053 Sum_probs=102.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---------------
Q 008730 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP--------------- 82 (556)
Q Consensus 18 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--------------- 82 (556)
...+......|+|++|.+.+....+..+..+..+..+|.++...|+|++|+..|++++++.|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 34455667788999999988888888888899999999999999999999999999999999987
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 83 -KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 83 -~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.+++++|.++..+|++++|+.+++++++++|++..++..++.++..+++ +++|+..+.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~ 146 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF--LEEAKENLY 146 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999888 677777665
No 148
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=3.4e-10 Score=122.77 Aligned_cols=121 Identities=8% Similarity=0.032 Sum_probs=116.3
Q ss_pred CChhHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKK----------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIE 76 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~----------~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~ 76 (556)
.+|+...+|..++.++...|+ +++|++.++++++.+|++..+|..++-++.+++ ++++|++.++++++
T Consensus 58 ~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~ 137 (567)
T 1dce_A 58 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE 137 (567)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh
Confidence 467888999999999999998 999999999999999999999999999999999 77999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730 77 IDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (556)
Q Consensus 77 l~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 129 (556)
++|++..+|..++.++..+| .+++|+++++++++.+|.+..+|..++.++..+
T Consensus 138 ~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 99999999999999999999 999999999999999999999999999998876
No 149
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=99.11 E-value=1.2e-09 Score=101.04 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=51.7
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEeccccccccc
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 367 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~ 367 (556)
+++.+|||+||++..+.++++.+... ..+.+|++||++|. +++..|..+ +..++.++||||....
T Consensus 26 m~i~~iSD~Hg~~~~l~~~l~~~~~~-~~D~ii~~GDl~~~-----~~~~~l~~l----~~~~~~V~GNhD~~~~ 90 (190)
T 1s3l_A 26 MKIGIMSDTHDHLPNIRKAIEIFNDE-NVETVIHCGDFVSL-----FVIKEFENL----NANIIATYGNNDGERC 90 (190)
T ss_dssp CEEEEECCCTTCHHHHHHHHHHHHHS-CCSEEEECSCCCST-----HHHHHGGGC----SSEEEEECCTTCCCHH
T ss_pred eEEEEEeeCCCCHHHHHHHHHHHhhc-CCCEEEECCCCCCH-----HHHHHHHhc----CCCEEEEeCCCcchHH
Confidence 67999999999999999999876432 34679999999984 677776544 3479999999998653
No 150
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.08 E-value=8.3e-10 Score=113.89 Aligned_cols=122 Identities=19% Similarity=0.186 Sum_probs=112.4
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CC
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----VYYANRAFAHTKLEEYGSAIQDASKAIEI------DP 79 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~p 79 (556)
++..+..+..+|..++..|++++|+..|+++++.+|++. .++..+|.++...|++++|+..+++++++ +|
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 367788899999999999999999999999999999987 58999999999999999999999999998 57
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhh
Q 008730 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~l~~~~~~~~~ 131 (556)
....++..+|.+|..+|++++|+..|++++++ .|....++..++.++...++
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 77899999999999999999999999999999 55567788999999988877
No 151
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.07 E-value=1.2e-09 Score=114.99 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=111.9
Q ss_pred ChhHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHhCCCChHH
Q 008730 10 SVSRAEELKALANEAFRA--KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL---EEYGSAIQDASKAIEIDPRYPKG 84 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~--g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~~~~ 84 (556)
.+..+..+..+|.++... ++|++|+++|+++++++|+++.++..+|.++..+ +++++|++.++++++++|+++.+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 345577888888877665 5799999999999999999999999999987665 56788999999999999999999
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 85 YYRRGAAYLAM----GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 85 ~~~lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+..+|..+... +++++|++.+++++..+|++..++..++.++...++ +++|+..+.
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~ 271 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE--PDKAIELLK 271 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc--hHHHHHHHH
Confidence 99999877665 577899999999999999999999999999998888 677777665
No 152
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.06 E-value=4.2e-10 Score=99.79 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=80.1
Q ss_pred CCChhHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-----------CHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKY----------SQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-----------EYGS 66 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~----------~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g-----------~~~~ 66 (556)
+.+|+.+++|.++|.++...+++ ++|+..|++|++++|++..+|+++|.+|..+| ++++
T Consensus 30 ~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~e 109 (158)
T 1zu2_A 30 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDL 109 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHH
Confidence 35688899999999999999875 59999999999999999999999999999885 8999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730 67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (556)
Q Consensus 67 A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 123 (556)
|+++|++|++++|++. .|.+++++.+..++.++.+.
T Consensus 110 A~~~~~kAl~l~P~~~---------------------~y~~al~~~~ka~el~~~~~ 145 (158)
T 1zu2_A 110 ATQFFQQAVDEQPDNT---------------------HYLKSLEMTAKAPQLHAEAY 145 (158)
T ss_dssp HHHHHHHHHHHCTTCH---------------------HHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCH---------------------HHHHHHHHHHhCHhccCccc
Confidence 9999999999999974 44555555555566555444
No 153
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.06 E-value=7.9e-10 Score=110.07 Aligned_cols=116 Identities=9% Similarity=-0.004 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 16 ELKALANEAFRAKKY-SQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 16 ~~~~lg~~~~~~g~~-~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
.....-....+.|++ ++|+..+.++|.++|++..+|+.++.++..++ ++++++..+.+++..+|++..+|+.++.++
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 334444444444444 35666666666666666666666666655555 566666666666666666666666666555
Q ss_pred ----HHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 93 ----LAM---GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 93 ----~~~---g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
... ++++++++.++++++.+|++..++...+.+...++.
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~ 159 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDL 159 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 444 455566666666666666666666555555555544
No 154
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.05 E-value=3.9e-09 Score=102.73 Aligned_cols=124 Identities=22% Similarity=0.248 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCCh
Q 008730 11 VSRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYP 82 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~ 82 (556)
+..+.++..+|..+.. .+++++|+..|+++++.+ ++.+++++|.+|.. .+++++|+..|+++++.+ ++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence 3456789999999999 999999999999999986 89999999999999 999999999999999984 89
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhhhHHHHhcCCC
Q 008730 83 KGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE 142 (556)
Q Consensus 83 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~----~~~~~~~~Ai~~~~ 142 (556)
.+++++|.+|.. .+++++|+.+|+++++.+ ++.++..++.++.. .++ +++|+..++
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~--~~~A~~~~~ 174 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD--LKKALASYD 174 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC--HHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC--HHHHHHHHH
Confidence 999999999999 999999999999999986 68899999999877 444 677766655
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.05 E-value=1.8e-09 Score=106.82 Aligned_cols=118 Identities=12% Similarity=0.032 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHH---HhCCCCh--
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAI---EIDPRYP-- 82 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~-- 82 (556)
...++.+|..+...|++++|+.+|+++++..+.. ..++.++|.+|...|++++|+.+|++++ +..|++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~ 194 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence 3445567777777778888888888888765443 5577788888888888888888888887 4455532
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhh
Q 008730 83 --KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKK 131 (556)
Q Consensus 83 --~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~l~~~~~~~~~ 131 (556)
.+++++|.+|..+|++++|+.++++++++.++ ...++..+|.++..+|+
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 251 (293)
T 2qfc_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 57788888888888888888888888877532 15667777777777776
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.04 E-value=7.4e-10 Score=102.20 Aligned_cols=129 Identities=11% Similarity=0.064 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---CCC--
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE------LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---DPR-- 80 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~-- 80 (556)
..+..+..+|..+...|++++|+.+|+++++ ..+....++.++|.++...|++++|+..+++++++ .++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 5688999999999999999999999999999 44556788999999999999999999999999998 443
Q ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 81 --YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DP----DAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 81 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~----~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
...++.++|.++..+|++++|+..+++++++.+. +. .++..++.++...|+ +++|+..+.
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 171 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN--LLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC--HHHHHHHHH
Confidence 3567999999999999999999999999987432 22 345778888888777 566655544
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.04 E-value=1.9e-09 Score=89.49 Aligned_cols=94 Identities=23% Similarity=0.272 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (556)
Q Consensus 47 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 126 (556)
.+..+..+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+..++++++..|++..++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHhcCCC
Q 008730 127 KAVKKLKFEEAIAVPE 142 (556)
Q Consensus 127 ~~~~~~~~~~Ai~~~~ 142 (556)
...++ +++|+..+.
T Consensus 83 ~~~~~--~~~A~~~~~ 96 (118)
T 1elw_A 83 EFLNR--FEEAKRTYE 96 (118)
T ss_dssp HHTTC--HHHHHHHHH
T ss_pred HHHhh--HHHHHHHHH
Confidence 98887 677766554
No 158
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.04 E-value=4.1e-10 Score=100.86 Aligned_cols=93 Identities=19% Similarity=0.170 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008730 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEI------------------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (556)
Q Consensus 48 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 109 (556)
+..+..+|..+++.|+|++|+..|++++.+ +|.+..+++++|.+|..+|++++|+.++++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567899999999999999999999999999 77778999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 110 KLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 110 ~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+++|+++.++..+|.++..+++ +++|+..+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~--~~~A~~~~~ 121 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWK--LDEAEEDLK 121 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhc--HHHHHHHHH
Confidence 9999999999999999999988 677776665
No 159
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.03 E-value=1.2e-09 Score=92.17 Aligned_cols=85 Identities=13% Similarity=0.035 Sum_probs=77.6
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
+|..+.++..+|.++...|+|++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++.+|+++.......
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999987765444
Q ss_pred HHHHH
Q 008730 90 AAYLA 94 (556)
Q Consensus 90 ~~~~~ 94 (556)
.+...
T Consensus 103 ai~~~ 107 (117)
T 3k9i_A 103 AILFY 107 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 160
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.02 E-value=1.4e-09 Score=92.68 Aligned_cols=97 Identities=25% Similarity=0.345 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730 44 NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (556)
Q Consensus 44 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 123 (556)
.|.+..++..+|.++...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..++++++++|++..++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHhcCCC
Q 008730 124 ECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 124 ~~~~~~~~~~~~~Ai~~~~ 142 (556)
.++...++ +++|+..+.
T Consensus 92 ~~~~~~~~--~~~A~~~~~ 108 (133)
T 2lni_A 92 AALEAMKD--YTKAMDVYQ 108 (133)
T ss_dssp HHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHhh--HHHHHHHHH
Confidence 99998887 677776665
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.01 E-value=3.6e-09 Score=106.10 Aligned_cols=123 Identities=9% Similarity=0.038 Sum_probs=115.2
Q ss_pred CCChhHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--HHHHHHHHHHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKK----------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE--YGSAIQDASKAI 75 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~----------~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al 75 (556)
..+|+...+|..++.++...+. +++++..+++++..+|.+..+|..++.++..+++ +++++..+.+++
T Consensus 58 ~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l 137 (331)
T 3dss_A 58 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL 137 (331)
T ss_dssp TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHH
Confidence 4578889999999999988776 7999999999999999999999999999999994 999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 76 EIDPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 76 ~l~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
+.+|.|..+|..++.++...|. ++++++++.++++.+|.|..+|..++.+...+.
T Consensus 138 ~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 138 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred HhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 699999999999999999999999999987773
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.01 E-value=2.6e-10 Score=121.27 Aligned_cols=106 Identities=17% Similarity=0.212 Sum_probs=95.0
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
+|+.+.++..+|.++...|++++|++.|+++++++|+++.+++++|.+|..+|++++|++.|+++++++|++..++..++
T Consensus 36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 115 (477)
T 1wao_1 36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115 (477)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 008730 90 AA--YLAMGKFKEALKDFQ-----------QVKKLSPND 115 (556)
Q Consensus 90 ~~--~~~~g~~~~A~~~~~-----------~al~l~p~~ 115 (556)
.+ +..+|++++|++.++ ++++++|+.
T Consensus 116 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 116 ECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 98 889999999999999 777776654
No 163
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=9.1e-10 Score=109.89 Aligned_cols=128 Identities=10% Similarity=0.024 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---- 81 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---- 81 (556)
..+..+.++|.++...|++++|+.+|++++++.+. ...++.++|.+|.. |++++|+.+|++|+++.|..
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~ 152 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR 152 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence 44677888888888888888888888888888543 24678888888888 88888888888888887643
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 82 --PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 82 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~------~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..++.++|.+|..+|++++|+.+|++++++.|++. .++..++.++..+++ +++|+..++
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~--~~~A~~~~~ 219 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD--YVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 56788888888888889899888888888866542 245556666665565 566666554
No 164
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.01 E-value=8.1e-10 Score=113.47 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=107.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------hH
Q 008730 17 LKALANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PK 83 (556)
Q Consensus 17 ~~~lg~~~~~~g~~~~Al~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~ 83 (556)
++.+|..++..|++++|+..|++|+++ .+..+.++..+|.+|..+|++++|+.++++|+++.+.. ..
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 344999999999999999999999998 23356889999999999999999999999999985443 46
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKKLKFEEAIAVPES 143 (556)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~------~~~~~l~~~~~~~~~~~~~~Ai~~~~~ 143 (556)
++.++|.+|..+|++++|+.+|++|+++.+... .++.++|.++..+++ +++|+..+.+
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~~ 249 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFKR 249 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence 899999999999999999999999999866443 478899999998887 6777776653
No 165
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.01 E-value=8.6e-10 Score=109.12 Aligned_cols=127 Identities=11% Similarity=-0.012 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------CCC
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEID-------PRY 81 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~ 81 (556)
..+..+|..+...+++++|+.+|+++++..+.. ..++.++|.+|..+|++++|+.+|+++++.. +..
T Consensus 116 ~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (293)
T 3u3w_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence 344568888888899999999999999975442 3478999999999999999999999999531 223
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..+++++|.+|..+|++++|+.++++++++.+.. ..++..+|.++..+|+. +++|++.+.
T Consensus 196 ~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~~A~~~~~ 261 (293)
T 3u3w_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE-EAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHH
Confidence 5688999999999999999999999999987544 77899999999988842 355544443
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.00 E-value=2.6e-09 Score=90.30 Aligned_cols=89 Identities=19% Similarity=0.148 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 89 (556)
.|..+..+..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 121 (131)
T 2vyi_A 42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121 (131)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCH
Q 008730 90 AAYLAMGKF 98 (556)
Q Consensus 90 ~~~~~~g~~ 98 (556)
.++..+|++
T Consensus 122 ~~~~~~~~~ 130 (131)
T 2vyi_A 122 IAELKLREA 130 (131)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhcC
Confidence 999998875
No 167
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.00 E-value=3.9e-09 Score=105.07 Aligned_cols=123 Identities=9% Similarity=0.069 Sum_probs=116.2
Q ss_pred CChhHHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH--HHHHHHHHHHHhCC
Q 008730 9 SSVSRAEELKALANEA----FRA---KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG--SAIQDASKAIEIDP 79 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~----~~~---g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~--~A~~~~~~al~l~p 79 (556)
.+|....+|..++.++ ... ++++++++.+.++++.+|.+..+|..++.++.+++.++ ++++.++++++.+|
T Consensus 98 ~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 3577788999999998 666 89999999999999999999999999999999999998 99999999999999
Q ss_pred CChHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 80 RYPKGYYRRGAAYLAMGK------FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
.|..+|..++.++...++ ++++++++++++..+|+|..++..++.++...++
T Consensus 178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 999999999999999998 9999999999999999999999999999988876
No 168
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.99 E-value=1.2e-09 Score=112.14 Aligned_cols=132 Identities=15% Similarity=0.117 Sum_probs=112.4
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR- 80 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~- 80 (556)
..+..+..+..+|.++...|++++|+.++++|+++.+. .+.++.++|.++..+|++++|+..|++++++.+.
T Consensus 136 ~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 215 (378)
T 3q15_A 136 DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 35677889999999999999999999999999987543 2567889999999999999999999999987431
Q ss_pred -----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 81 -----YPKGYYRRGAAYLAMGKFKEALKDFQQVKK-----LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 81 -----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
...++.++|.+|..+|++++|+.+|+++++ .+|....++..++.++..+|+ +++|+...+
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 285 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ--TQKAFQFIE 285 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 246889999999999999999999999999 678778899999999998887 566666555
No 169
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.98 E-value=1.4e-09 Score=111.39 Aligned_cols=131 Identities=15% Similarity=0.205 Sum_probs=115.2
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-- 81 (556)
.+..+..+..+|..+...|++++|+.+|++++++.+... .++.++|.++...|++++|+..+++++++.|..
T Consensus 183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence 456678899999999999999999999999999876543 389999999999999999999999999987765
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 82 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..++..+|.++...|++++|+..|++++++.+.. ..++..++.++...|+ +++|+..+.
T Consensus 263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 331 (406)
T 3sf4_A 263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN--HDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 7799999999999999999999999999986654 5678889999988887 677766654
No 170
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.98 E-value=2.4e-09 Score=87.81 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=72.3
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYY 86 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~ 86 (556)
.+|+.+.+++.+|.+++..|++++|+..|+++++++|+++.+|..+|.+|..+|++++|+..|++++++.|. +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999998764 344444
Q ss_pred HHHHHHH
Q 008730 87 RRGAAYL 93 (556)
Q Consensus 87 ~lg~~~~ 93 (556)
.+...+.
T Consensus 82 ~l~~~l~ 88 (100)
T 3ma5_A 82 ELQDAKL 88 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 171
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.97 E-value=3.8e-09 Score=104.48 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CCCC
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRY 81 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~ 81 (556)
..+..+...|..++..|++++|+..|+++++.+|.+ ..++..+|.++...|++++|+..+++++++ .|..
T Consensus 3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 346778899999999999999999999999999998 478889999999999999999999999987 4556
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhh
Q 008730 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKK 131 (556)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~ 131 (556)
..++..+|.++...|++++|+..+++++++.|.. ..++..++.++...++
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 7899999999999999999999999999987654 3378888888888776
No 172
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.97 E-value=1.5e-08 Score=100.03 Aligned_cols=132 Identities=12% Similarity=0.098 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--- 81 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--- 81 (556)
+.....+...+..++..|+|++|++.++++++..+... ..++.+|.++...|++++|+..+++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 45567788899999999999999999999999988764 346678889999999999999999999876543
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHhhhhHHHHhcCCCCC
Q 008730 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVK---KLSPNDP----DAAQKVKECEKAVKKLKFEEAIAVPESE 144 (556)
Q Consensus 82 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~----~~~~~l~~~~~~~~~~~~~~Ai~~~~~~ 144 (556)
..+++++|.+|..+|++++|+.+|++|+ +..|++. .++.+++.++..+++ +++|+..+.++
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~Al~~~~ka 222 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVNKA 222 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh--HHHHHHHHHHH
Confidence 5689999999999999999999999999 5566653 588999999998888 78888877643
No 173
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.97 E-value=8.7e-09 Score=86.23 Aligned_cols=98 Identities=29% Similarity=0.447 Sum_probs=87.9
Q ss_pred hCCCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730 43 LNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (556)
Q Consensus 43 ~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 121 (556)
.+|.. ..++..+|.++...|++++|+..++++++.+|.++.+++.+|.++...|++++|+..++++++..|.+..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 35655 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHhcCCC
Q 008730 122 VKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 122 l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++.++...++ +++|+..+.
T Consensus 83 la~~~~~~~~--~~~A~~~~~ 101 (125)
T 1na0_A 83 LGNAYYKQGD--YDEAIEYYQ 101 (125)
T ss_dssp HHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHhcC--HHHHHHHHH
Confidence 9999988887 677766654
No 174
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=2.1e-09 Score=101.16 Aligned_cols=126 Identities=17% Similarity=0.019 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE----EYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g----~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
..+.+++.+|..+...+++++|+.+|+++++. .++.+++++|.+|.. + ++++|+.+|+++++ +.++.++++
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~ 90 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV 90 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence 46789999999999999999999999999875 689999999999988 7 89999999999964 578999999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHh--hhhHHHHhcCCC
Q 008730 88 RGAAYLA----MGKFKEALKDFQQVKKLSP--NDPDAAQKVKECEKAVK--KLKFEEAIAVPE 142 (556)
Q Consensus 88 lg~~~~~----~g~~~~A~~~~~~al~l~p--~~~~~~~~l~~~~~~~~--~~~~~~Ai~~~~ 142 (556)
+|.+|.. .+++++|+.+|+++++..| .++.++..++.++..-. ..++++|+..+.
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9999998 8999999999999999988 35899999999987721 112566666554
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.96 E-value=4.2e-09 Score=89.64 Aligned_cols=92 Identities=23% Similarity=0.193 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 008730 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKV 122 (556)
Q Consensus 49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l 122 (556)
.+++.+|.++...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++..|++ +.++..+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999998 899999999999999999999999999999999 8899999
Q ss_pred HHHHHHHhhhhHHHHhcCCC
Q 008730 123 KECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 123 ~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+.++..+|+ +++|+..+.
T Consensus 83 a~~~~~~g~--~~~A~~~~~ 100 (129)
T 2xev_A 83 GLSQYGEGK--NTEAQQTLQ 100 (129)
T ss_dssp HHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHcCC--HHHHHHHHH
Confidence 999998887 677776665
No 176
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.96 E-value=2e-09 Score=116.83 Aligned_cols=123 Identities=11% Similarity=0.052 Sum_probs=116.0
Q ss_pred CChhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHH
Q 008730 9 SSVSRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g--~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~ 85 (556)
.+|+..++|..++.++...+ ++++|++.++++++.+|.+..+|..++.++.++| .+++|++++.++++.+|.+..+|
T Consensus 102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW 181 (567)
T 1dce_A 102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 181 (567)
T ss_dssp HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHH
Confidence 46788999999999999999 7799999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 86 YRRGAAYLAM--------------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 86 ~~lg~~~~~~--------------g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
++++.++..+ +.+++|++++.+|+.++|++..+|.+++.++...++
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 9999999986 568999999999999999999999999998876655
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=5.6e-09 Score=90.79 Aligned_cols=99 Identities=13% Similarity=0.155 Sum_probs=91.8
Q ss_pred HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730 42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (556)
Q Consensus 42 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 118 (556)
..+|.+...+..+|.++...|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..++++++++|++..+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3467889999999999999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 119 AQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+..++.++...++ +++|+..+.
T Consensus 102 ~~~~a~~~~~~~~--~~~A~~~~~ 123 (148)
T 2dba_A 102 LYRRSQALEKLGR--LDQAVLDLQ 123 (148)
T ss_dssp HHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999887 677766655
No 178
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.95 E-value=4.3e-09 Score=103.70 Aligned_cols=97 Identities=23% Similarity=0.249 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008730 45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (556)
Q Consensus 45 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 124 (556)
|.++.++..+|.++...|+|++|+..|+++++.+|+++.+++++|.+|..+|++++|+..++++++++|++..++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHhcCCCC
Q 008730 125 CEKAVKKLKFEEAIAVPES 143 (556)
Q Consensus 125 ~~~~~~~~~~~~Ai~~~~~ 143 (556)
++..+++ +++|+..+..
T Consensus 81 ~~~~~g~--~~~A~~~~~~ 97 (281)
T 2c2l_A 81 CQLEMES--YDEAIANLQR 97 (281)
T ss_dssp HHHHTTC--HHHHHHHHHH
T ss_pred HHHHcCC--HHHHHHHHHH
Confidence 9999887 6777776653
No 179
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=98.95 E-value=4.5e-09 Score=99.75 Aligned_cols=72 Identities=8% Similarity=0.070 Sum_probs=53.6
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccc
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 366 (556)
++|+++||+||+...+.++++..... ..+.+|++||++|+|+...++..++..++.. +..++.++||||...
T Consensus 6 mri~~iSD~H~~~~~~~~~~~~~~~~-~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~-~~pv~~v~GNHD~~~ 77 (228)
T 1uf3_A 6 RYILATSNPMGDLEALEKFVKLAPDT-GADAIALIGNLMPKAAKSRDYAAFFRILSEA-HLPTAYVPGPQDAPI 77 (228)
T ss_dssp CEEEEEECCTTCHHHHHHHHTHHHHH-TCSEEEEESCSSCTTCCHHHHHHHHHHHGGG-CSCEEEECCTTSCSH
T ss_pred EEEEEEeeccCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEECCCCCchh
Confidence 57999999999999998888765321 2357999999999997666554455444432 335999999999754
No 180
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=98.95 E-value=4.5e-09 Score=96.03 Aligned_cols=110 Identities=18% Similarity=0.195 Sum_probs=76.0
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccccC
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 372 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g 372 (556)
+++.+|||+||++..|.++++.+.. ..+.++++||+.. +++ ..+. ..++.++||||....
T Consensus 7 m~i~~isD~H~~~~~~~~~~~~~~~--~~d~i~~~GD~~~------~~l---~~l~----~~~~~v~GNhD~~~~----- 66 (176)
T 3ck2_A 7 QTIIVMSDSHGDSLIVEEVRDRYVG--KVDAVFHNGDSEL------RPD---SPLW----EGIRVVKGNMDFYAG----- 66 (176)
T ss_dssp EEEEEECCCTTCHHHHHHHHHHHTT--TSSEEEECSCCCS------CTT---CGGG----TTEEECCCTTCCSTT-----
T ss_pred cEEEEEecCCCCHHHHHHHHHHhhc--CCCEEEECCCCch------HHH---Hhhh----CCeEEecCcccchhc-----
Confidence 4699999999999999999998753 4567999999721 222 2222 259999999997531
Q ss_pred chhhHHhhhhHHHHHHHHHHhcccccc--ccc-CCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhhcCCCCC
Q 008730 373 FEGEVRSKLSETFVELFAEVFCCLPLA--HVL-NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP 449 (556)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~lP~~--~~i-~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~ 449 (556)
+|.. ..+ +.+++++||.+..+ |
T Consensus 67 -----------------------~p~~~~~~~~~~~i~~~Hg~~~~~---------------------------~----- 91 (176)
T 3ck2_A 67 -----------------------YPERLVTELGSTKIIQTHGHLFDI---------------------------N----- 91 (176)
T ss_dssp -----------------------CCSEEEEEETTEEEEEECSGGGTT---------------------------T-----
T ss_pred -----------------------CCcEEEEEECCeEEEEECCCccCC---------------------------C-----
Confidence 1211 112 45799999865100 0
Q ss_pred CCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccC
Q 008730 450 LPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEG 491 (556)
Q Consensus 450 ~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G 491 (556)
.+.+.+.++++..+++++|-||.-....
T Consensus 92 --------------~~~~~l~~~~~~~~~d~vi~GHtH~~~~ 119 (176)
T 3ck2_A 92 --------------FNFQKLDYWAQEEEAAICLYGHLHVPSA 119 (176)
T ss_dssp --------------TCSHHHHHHHHHTTCSEEECCSSCCEEE
T ss_pred --------------CCHHHHHHHHHhcCCCEEEECCcCCCCc
Confidence 1235677778889999999999986543
No 181
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.94 E-value=3.6e-09 Score=108.27 Aligned_cols=121 Identities=16% Similarity=0.201 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CCC
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----VYYANRAFAHTKLEEYGSAIQDASKAIEI------DPR 80 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~ 80 (556)
...+..+..+|..++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+..+++++.+ .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34577899999999999999999999999999999984 68999999999999999999999999987 345
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhh
Q 008730 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKK 131 (556)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~ 131 (556)
...++..+|.++..+|++++|+..+++++++.|.. ..++..++.++...++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999999997654 4478888888888776
No 182
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=98.94 E-value=3.2e-09 Score=100.37 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=81.7
Q ss_pred CcceEeccCCCCHH------HHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccc
Q 008730 293 KHFTVCGDVHGQFY------DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 293 ~~i~vigDiHG~~~------~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 366 (556)
++|.+|||+||+.. .|.++++ ....+.+|++||++| .+++.+|..+. ..+++++||||...
T Consensus 26 m~i~~iSD~H~~~~~~~l~~~l~~~~~----~~~~D~vi~~GDl~~-----~~~l~~l~~~~----~~v~~V~GNHD~~~ 92 (215)
T 2a22_A 26 DLVLLIGDLKIPYGAKELPSNFRELLA----TDKINYVLCTGNVCS-----QEYVEMLKNIT----KNVYIVSGDLDSAI 92 (215)
T ss_dssp EEEEEECCCCTTTTCSSCCGGGHHHHH----CTTCCEEEECSCCCC-----HHHHHHHHHHC----SCEEECCCTTCCSC
T ss_pred cEEEEEecCCCCCChHHHHHHHHHHHh----cCCCCEEEECCCCCC-----HHHHHHHHHcC----CCEEEecCCCcCcc
Confidence 57999999999763 3334443 223467999999997 57888887664 36999999999876
Q ss_pred cccccCchhhHHhhhhHHHHHHHHHHhccccccccc---CCeEEEEecccccCCCCChhhhhhcccCCCCCCccchhhhh
Q 008730 367 MNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELL 443 (556)
Q Consensus 367 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~ll 443 (556)
.... .+|+..+|....+ +.+++++||....+
T Consensus 93 ~~~~-------------------~~~~~~lp~~~~~~~~~~~i~l~Hg~~~~~--------------------------- 126 (215)
T 2a22_A 93 FNPD-------------------PESNGVFPEYVVVQIGEFKIGLMHGNQVLP--------------------------- 126 (215)
T ss_dssp CBCC-------------------GGGTBCCCSEEEEEETTEEEEEECSTTSSS---------------------------
T ss_pred cccC-------------------hhhHhhCCceEEEecCCeEEEEEcCCccCC---------------------------
Confidence 5411 0255667754432 34799999854100
Q ss_pred cCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccc
Q 008730 444 WSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKD 489 (556)
Q Consensus 444 w~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~ 489 (556)
| .+.+.+.++++..++++++-||.-..
T Consensus 127 ~-------------------~~~~~l~~~~~~~~~d~vl~GHtH~~ 153 (215)
T 2a22_A 127 W-------------------DDPGSLEQWQRRLDCDILVTGHTHKL 153 (215)
T ss_dssp T-------------------TCHHHHHHHHHHHTCSEEEECSSCCC
T ss_pred C-------------------CCHHHHHHHHhhcCCCEEEECCcCCC
Confidence 1 13456677777789999999999754
No 183
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=2.8e-09 Score=106.31 Aligned_cols=128 Identities=24% Similarity=0.202 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--C--
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--Y-- 81 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~-- 81 (556)
..+..+...|..+...|+|++|+.+|.+++++.+.. ..++.++|.+|..+|++++|+.+|++++++.+. +
T Consensus 34 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~ 113 (307)
T 2ifu_A 34 SAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD 113 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 334556667889999999999999999999997543 568999999999999999999999999998543 2
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 82 --PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 82 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..++.++|.+|.. |++++|+.+|++|+++.|.. ..++..++.++..+++ +++|+..+.
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 179 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK--FDEAAASLQ 179 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 4689999999999 99999999999999998754 5678889999988887 788877766
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.93 E-value=7.4e-10 Score=112.33 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA-YL 93 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~-~~ 93 (556)
..+.++|.++...|+|++|+.+|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+ ..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998 44
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 008730 94 AMGKFKEALKDFQQVKKLSPNDPD 117 (556)
Q Consensus 94 ~~g~~~~A~~~~~~al~l~p~~~~ 117 (556)
..+..++|...|++++...|+++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 567788899999999999998764
No 185
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.92 E-value=2e-08 Score=100.66 Aligned_cols=119 Identities=12% Similarity=0.048 Sum_probs=110.8
Q ss_pred CChhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCCCChHHH
Q 008730 9 SSVSRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g--~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~ 85 (556)
.+|....+|..++.++...+ +++++++.+.++++.+|.+..+|..++.+....|. ++++++++.++++.+|.|..+|
T Consensus 103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW 182 (331)
T 3dss_A 103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 182 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 46888999999999999999 49999999999999999999999999999999999 6999999999999999999999
Q ss_pred HHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008730 86 YRRGAAYLAM--------------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (556)
Q Consensus 86 ~~lg~~~~~~--------------g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~ 127 (556)
.+++.++..+ +.++++++++.+++..+|+|..+|..+..++.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999988 56899999999999999999999987766554
No 186
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.92 E-value=3.4e-09 Score=99.70 Aligned_cols=127 Identities=17% Similarity=0.045 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCC--CC
Q 008730 12 SRAEELKALANEAFRAK----KYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDP--RY 81 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g----~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p--~~ 81 (556)
..+.+++.+|..|.. + ++++|+.+|+++.+ +.++.+++++|.+|.. .+++++|+.+|+++++..| .+
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 124 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA 124 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence 356789999999998 7 99999999999965 6789999999999988 8899999999999999988 35
Q ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh----hhhHHHHhcCCC
Q 008730 82 PKGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK----KLKFEEAIAVPE 142 (556)
Q Consensus 82 ~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~----~~~~~~Ai~~~~ 142 (556)
+.+++++|.+|.. .+++++|+.+|++++++ |.++.+...++.++.... ..++++|+..++
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~ 192 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLN 192 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 9999999999999 89999999999999999 778889999999987642 123666666554
No 187
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.92 E-value=1.4e-09 Score=112.23 Aligned_cols=131 Identities=14% Similarity=0.219 Sum_probs=113.3
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-- 81 (556)
.+..+..+..+|..+...|++++|+.+|++++++.+... .++.++|.+|...|++++|+..+++++++.+..
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 355677899999999999999999999999999877543 389999999999999999999999999987754
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 82 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..++..+|.++..+|++++|+.+|++++++.+.. ..++..++.++...|+ +++|+..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 367 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG--HERALKYAE 367 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence 7799999999999999999999999999986543 4578889999988887 566665554
No 188
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.91 E-value=3e-09 Score=105.29 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=112.5
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-- 81 (556)
.+..+..+..+|..+...|++++|+.+++++++..+.. ..++..+|.++...|++++|+..+++++.+.+..
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 45567789999999999999999999999999886543 3489999999999999999999999999987665
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 82 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..++..+|.++...|++++|+..+++++++.+.. ..++..++.++...|+ +++|+..+.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 327 (338)
T 3ro2_A 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence 7799999999999999999999999999986543 4478889999988887 566655544
No 189
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.91 E-value=5.4e-09 Score=88.44 Aligned_cols=95 Identities=16% Similarity=0.237 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 008730 46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-------PDA 118 (556)
Q Consensus 46 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~~ 118 (556)
..+..+..+|.++...|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++..|++ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999999999999999877 889
Q ss_pred HHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 119 AQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+..++.++...++ +++|+..+.
T Consensus 82 ~~~la~~~~~~~~--~~~A~~~~~ 103 (131)
T 1elr_A 82 YARIGNSYFKEEK--YKDAIHFYN 103 (131)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHhcc--HHHHHHHHH
Confidence 9999999988887 677766654
No 190
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=98.90 E-value=1.5e-09 Score=99.34 Aligned_cols=85 Identities=26% Similarity=0.307 Sum_probs=62.9
Q ss_pred CcceEeccCCC--CHHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccccccc
Q 008730 293 KHFTVCGDVHG--QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKI 370 (556)
Q Consensus 293 ~~i~vigDiHG--~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~ 370 (556)
++|.+|||+|| +...|.++++... ...+.+|++||++|+ +++.+|..+. ..++.++||||...
T Consensus 23 mri~~iSD~Hg~~~~~~l~~~l~~~~--~~~D~ii~~GD~~~~-----~~~~~l~~~~----~~v~~V~GNhD~~~---- 87 (178)
T 2kkn_A 23 KRFLLISDSHVPVRMASLPDEILNSL--KEYDGVIGLGDYVDL-----DTVILLEKFS----KEFYGVHGNMDYPD---- 87 (178)
T ss_dssp EEEEEECCCCBTTTTCCCCHHHHHGG--GGCSEEEESSCBSCH-----HHHHHHHHHT----SSEEECCCSSSCGG----
T ss_pred eEEEEEecccCCCCHHHHHHHHHHHh--cCCCEEEECCCCCCH-----HHHHHHHhcC----CCEEEEECCCCcHH----
Confidence 47999999997 7777888887654 234679999999984 7888887763 35999999999753
Q ss_pred cCchhhHHhhhhHHHHHHHHHHhccccccccc---CCeEEEEeccc
Q 008730 371 YGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGL 413 (556)
Q Consensus 371 ~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i---~~~~~~vHgGi 413 (556)
|+..+|....+ +.+++++||..
T Consensus 88 ---------------------~~~~lp~~~~~~~~g~~i~l~HG~~ 112 (178)
T 2kkn_A 88 ---------------------VKEHLPFSKVLLVEGVTIGMCHGWG 112 (178)
T ss_dssp ---------------------GGGTSCSCEEEEETTEEEEECCSCC
T ss_pred ---------------------HHhhCCcceEEEECCEEEEEECCCC
Confidence 23346654333 45799999853
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.89 E-value=8.6e-09 Score=105.80 Aligned_cols=96 Identities=20% Similarity=0.164 Sum_probs=91.5
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
.++..+..+.++|.+++..|+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+.+|++|++++|++..++..+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHH
Q 008730 89 GAAYLAMGKFKEALKD 104 (556)
Q Consensus 89 g~~~~~~g~~~~A~~~ 104 (556)
+.++..++++++|.+.
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888654
No 192
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.88 E-value=1.2e-08 Score=99.50 Aligned_cols=109 Identities=14% Similarity=0.042 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--CC-ChHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEID--PR-YPKGY 85 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~-~~~~~ 85 (556)
|... ..+.+|..+++.++|++|+.+|+++....+.. ..+++++|.++..+|++++|+.+|++++... |. .+.++
T Consensus 133 p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~ 211 (282)
T 4f3v_A 133 SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIA 211 (282)
T ss_dssp CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHH
T ss_pred CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHH
Confidence 3334 45555555555555555555555444332111 2345555555555555555555555555322 33 34455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 121 (556)
+++|.++..+|+.++|...|++++..+|+ ..+...
T Consensus 212 ~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~a 246 (282)
T 4f3v_A 212 WYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAA 246 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHH
Confidence 55555555555555555555555555555 444333
No 193
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.87 E-value=1.7e-08 Score=81.79 Aligned_cols=68 Identities=22% Similarity=0.427 Sum_probs=66.0
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730 52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK-GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (556)
Q Consensus 52 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 119 (556)
+.+|.++...|++++|+..|+++++.+|+++. +++.+|.+|..+|++++|+..|+++++++|++..++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 57899999999999999999999999999999 999999999999999999999999999999999987
No 194
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.87 E-value=2e-08 Score=107.93 Aligned_cols=132 Identities=14% Similarity=0.039 Sum_probs=117.3
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
..|+....|..+|..+...|++++|...|+++++.+|.++ .+|..+|.++.+.|++++|+..|++|++..|.....+..
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 3577889999999999999999999999999999999985 699999999999999999999999999999988888887
Q ss_pred HHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 88 RGAA-YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 88 lg~~-~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.+.+ +...|++++|+..|+++++..|+++.++..++.++...|+ .++|...++
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~--~~~Ar~~~~ 449 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE--DNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC--HHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC--HhhHHHHHH
Confidence 7765 4469999999999999999999999999999998877776 455555544
No 195
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.86 E-value=1.6e-08 Score=101.89 Aligned_cols=123 Identities=8% Similarity=-0.018 Sum_probs=108.4
Q ss_pred CChhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-h-CHHHHHHHHHHHHHhCCCChHHH
Q 008730 9 SSVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-E-EYGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g-~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~-g-~~~~A~~~~~~al~l~p~~~~~~ 85 (556)
.+|+...+|..++.++...| .+++++..+++++..+|++..+|..++.++..+ + +++++++.+.++++.+|+|..+|
T Consensus 83 ~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW 162 (349)
T 3q7a_A 83 MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTW 162 (349)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHH
T ss_pred hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 46778888999999998888 599999999999999999999999999988887 7 88899999999999999999999
Q ss_pred HHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 86 YRRGAAYLAMGKFK--------EALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 86 ~~lg~~~~~~g~~~--------~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
..++.++...+.++ +++++++++++.+|.|..++...+.+...+++
T Consensus 163 ~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 99999998888877 89999999999999999999998888777654
No 196
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=1.3e-08 Score=102.61 Aligned_cols=123 Identities=10% Similarity=0.023 Sum_probs=109.1
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRR 88 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l 88 (556)
.++-..++..+.......+..++|++.+.++|.++|++..+|+.++.++..++ .+++++..+++++..+|++..+|+.+
T Consensus 50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR 129 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR 129 (349)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 34444555555555555566678999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHHHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 89 GAAYLAM-G-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 89 g~~~~~~-g-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
+.++..+ + +++++++.++++++.+|.|..++...+.+...++..
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~ 175 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTL 175 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence 9999998 8 999999999999999999999999999998887763
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.85 E-value=1.3e-08 Score=107.93 Aligned_cols=118 Identities=13% Similarity=0.164 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------C
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELN-----SQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEI--------D 78 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-----p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~ 78 (556)
+...+.+..+..+|+|++|+..|++++++. |++ ..++.++|.+|..+|+|++|+..+++++++ +
T Consensus 310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344556667888999999999999999873 444 567999999999999999999999999976 3
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHHhhh
Q 008730 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDAA---QKVKECEKAVKKL 132 (556)
Q Consensus 79 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~---~~l~~~~~~~~~~ 132 (556)
|+-...+.++|.+|..+|++++|+..|++|+++ .|+++.+. ..++.++..++..
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~ 451 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF 451 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Confidence 444668999999999999999999999999986 57776554 5666777666663
No 198
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.85 E-value=1.2e-08 Score=104.53 Aligned_cols=133 Identities=17% Similarity=0.126 Sum_probs=106.4
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-----hC
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIE-----ID 78 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----l~ 78 (556)
.+..+.++..+|.++...|++++|+++|++++++.+. .+.++.++|.+|..+|++++|+.+++++++ .+
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 3456889999999999999999999999999997432 356899999999999999999999999999 78
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHhh-hhHHHHhcCCC
Q 008730 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN-----DPDAAQKVKECEKAVKK-LKFEEAIAVPE 142 (556)
Q Consensus 79 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~~l~~~~~~~~~-~~~~~Ai~~~~ 142 (556)
|..+.+++.+|.++..+|++++|+.++++++++.+. .......++.++...+. ..+.+|+...+
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 888999999999999999999999999999999654 23333444444433322 11455555443
No 199
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=98.84 E-value=4.5e-08 Score=90.65 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=45.6
Q ss_pred CcceEeccCCCCHH--HHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEecccccccc
Q 008730 293 KHFTVCGDVHGQFY--DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 293 ~~i~vigDiHG~~~--~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 366 (556)
++|.++||+||+.. .+.+.+...-.....+.+|++||++| .+++.+|..+. ..+++++||||...
T Consensus 11 m~i~~iSD~H~~~~~~~~~~~l~~~~~~~~~d~ii~~GDl~~-----~~~~~~l~~~~----~~~~~v~GNhD~~~ 77 (192)
T 1z2w_A 11 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCT-----KESYDYLKTLA----GDVHIVRGDFDENL 77 (192)
T ss_dssp CEEEEECCCCBTTTCSSCCHHHHTTCCTTSCSEEEECSCCBS-----HHHHHHHHHHC----SEEEECCCTTCCCT
T ss_pred eEEEEEecCCCCccchhHHHHHHHHhccCCCCEEEEcCCCCC-----HHHHHHHHhcC----CCEEEEcCCcCccc
Confidence 46999999999743 23333332211223567999999997 57888877663 36999999999765
No 200
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.83 E-value=2.4e-08 Score=98.54 Aligned_cols=132 Identities=14% Similarity=0.105 Sum_probs=108.3
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV------YYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-- 81 (556)
.......+...+..++..|+|++|+..++++++..+..+. .+..+|.++...+++++|+..+++++.+.+..
T Consensus 71 ~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 150 (293)
T 3u3w_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC
T ss_pred cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc
Confidence 3455666777889999999999999999999998887765 33458888888899999999999999975443
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS---PN----DPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (556)
Q Consensus 82 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~----~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~ 143 (556)
..++.++|.+|..+|++++|+.+|+++++.. |. ...++.+++.++..+++ +++|+....+
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~A~~~~~~ 221 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVNK 221 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH--HHHHHHHHHH
Confidence 3479999999999999999999999999642 12 24578899999998887 7888777663
No 201
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=3.5e-08 Score=86.50 Aligned_cols=102 Identities=11% Similarity=0.093 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHHHHHH
Q 008730 29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEID-P-RYPKGYYRRGAAYLAMGKFKEALK 103 (556)
Q Consensus 29 ~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~-p-~~~~~~~~lg~~~~~~g~~~~A~~ 103 (556)
+...+.+.|.+.++.++.+.++.+++|.++.+.+ +.++++..++.+++.+ | +..+++|++|..++++|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4567788899999999999999999999999988 6779999999999999 7 568999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 104 DFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 104 ~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
+++++++++|+|..+......+.....
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988887766554
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.83 E-value=1.9e-08 Score=84.21 Aligned_cols=88 Identities=7% Similarity=-0.020 Sum_probs=75.9
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHH
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGY 85 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~ 85 (556)
..+|..+..++.+|.++...|++++|+..|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|. +..+.
T Consensus 13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (115)
T 2kat_A 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVV 92 (115)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHH
Confidence 3456778999999999999999999999999999999999999999999999999999999999999999875 34444
Q ss_pred HHHHHHHHHc
Q 008730 86 YRRGAAYLAM 95 (556)
Q Consensus 86 ~~lg~~~~~~ 95 (556)
..+...+..+
T Consensus 93 ~~l~~~l~~l 102 (115)
T 2kat_A 93 KELQVFLRRL 102 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444433
No 203
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.83 E-value=2.1e-08 Score=87.89 Aligned_cols=103 Identities=20% Similarity=0.242 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-----
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----- 80 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----- 80 (556)
..+..+..+|..+...|++++|+.++++++++.+.. ..++.++|.++...|++++|+..+++++++.+.
T Consensus 47 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 126 (164)
T 3ro3_A 47 AERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 126 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchH
Confidence 445789999999999999999999999999986553 678999999999999999999999999987432
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730 81 -YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (556)
Q Consensus 81 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 114 (556)
...++..+|.++...|++++|+..+++++++...
T Consensus 127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 2568999999999999999999999999988654
No 204
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.78 E-value=4.3e-09 Score=102.75 Aligned_cols=126 Identities=14% Similarity=0.089 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-C-hHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-Y-PKGYYRRGAA 91 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~-~~~~~~lg~~ 91 (556)
-.....++..+...|+|++|.+.|..++...|.+. +++.+|.++++.+++++|+..|+++....+. . ..+++++|.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 45677789999999999999999999999999988 9999999999999999999999988765322 1 3589999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 92 YLAMGKFKEALKDFQQVKKLS--PN-DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~--p~-~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+..+|++++|+.+|++++... |. ..+++..++.++..+|+ .++|...++
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr--~deA~~~l~ 232 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN--ESAAVALLE 232 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999998654 55 56799999999999998 577776665
No 205
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.78 E-value=2.6e-08 Score=107.04 Aligned_cols=131 Identities=15% Similarity=0.058 Sum_probs=112.4
Q ss_pred ChhHHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730 10 SVSRAEELKALANEAFR-------AKKYS-------QAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~-------~g~~~-------~Al~~~~~al~-~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 74 (556)
.|..+..|..+|..+.. .|+++ +|+..|++|++ ..|++..+|..+|..+.+.|++++|...|+++
T Consensus 268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35667889999999886 79987 99999999998 89999999999999999999999999999999
Q ss_pred HHhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHhhhhHHHHhcCCC
Q 008730 75 IEIDPRYP-KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE-KAVKKLKFEEAIAVPE 142 (556)
Q Consensus 75 l~l~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~-~~~~~~~~~~Ai~~~~ 142 (556)
++++|.++ .+|..+|.++.+.|++++|++.|++|++..|.....+...+.+. ...|+ .++|...++
T Consensus 348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~--~~~A~~~~e 415 (530)
T 2ooe_A 348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFE 415 (530)
T ss_dssp HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC--HHHHHHHHH
T ss_pred hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC--hhHHHHHHH
Confidence 99999986 69999999999999999999999999999988777766555442 23343 566666555
No 206
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=98.74 E-value=5.5e-09 Score=98.13 Aligned_cols=69 Identities=20% Similarity=0.318 Sum_probs=57.2
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCC--------ChHHHHHHHHhccccCCCeEEEecccccc
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGS--------FSVEVILTLFAFKCMCPSAIYLSRGNHES 364 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~--------~s~e~l~~l~~lk~~~p~~v~~lrGNHE~ 364 (556)
+++++|||+||++..+.++++.+... ..+.+|++||++|+|+ .+.+++.+|..+. ..+++++||||.
T Consensus 26 mki~~iSD~H~~~~~l~~~l~~~~~~-~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~~~----~~v~~V~GNHD~ 100 (208)
T 1su1_A 26 MKLMFASDIHGSLPATERVLELFAQS-GAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVA----HKVIAVRGNCDS 100 (208)
T ss_dssp CEEEEECCCTTBHHHHHHHHHHHHHH-TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTG----GGEEECCCTTCC
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHHhc-CCCEEEECCCccccCcccccccccCHHHHHHHHHhcC----CceEEEECCCch
Confidence 46999999999999999998876422 2367999999999998 4688999988775 369999999997
Q ss_pred cc
Q 008730 365 KS 366 (556)
Q Consensus 365 ~~ 366 (556)
..
T Consensus 101 ~~ 102 (208)
T 1su1_A 101 EV 102 (208)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.74 E-value=8e-08 Score=77.66 Aligned_cols=73 Identities=14% Similarity=0.103 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730 44 NSQNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (556)
Q Consensus 44 ~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 116 (556)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|..++..|+|++|+..|+++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 68889999999999876665 78999999999999999999999999999999999999999999999998843
No 208
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.73 E-value=2.9e-08 Score=91.26 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=93.2
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCC
Q 008730 24 AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRYPKGYYRRGAAYLAMGK 97 (556)
Q Consensus 24 ~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~lg~~~~~~g~ 97 (556)
++..|++++|.+.++......+..+.++..+|.++...|++++|+..+++++++ .|....++.++|.++..+|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467899999999665554433367899999999999999999999999999983 44557899999999999999
Q ss_pred HHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 98 FKEALKDFQQVKKL---SPND----PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 98 ~~~A~~~~~~al~l---~p~~----~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
+++|+..+++++++ .+++ ..++..++.++...|+ +++|+....
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 131 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD--LAGARQEYE 131 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 99999999999998 4433 4567888999888887 677766655
No 209
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=98.71 E-value=4.4e-08 Score=90.94 Aligned_cols=137 Identities=13% Similarity=0.028 Sum_probs=85.4
Q ss_pred CcceEeccCCCCHHHH-------------HHHHHhcCC-CCCCCCeeeecccccCCCChHHHHHHHHhccccCCCeEEEe
Q 008730 293 KHFTVCGDVHGQFYDL-------------LNIFELNGL-PSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLS 358 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l-------------~~~l~~~~~-~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~l 358 (556)
++|++|||+|+....+ .++++.+.. ....+.+|++||++++|+...+++.+|..+. ..++++
T Consensus 2 ~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~l~~l~----~~~~~v 77 (195)
T 1xm7_A 2 AMMYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTWHFNDKNEYLRIWKALP----GRKILV 77 (195)
T ss_dssp CCEEEEBCCCBTCTTHHHHSTTTCCTTHHHHHHHHHHTTCCTTCEEEECSCCBSCSCCTTSHHHHHHHSS----SEEEEE
T ss_pred cEEEEEeccccCCCccccccCCCCHHHHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHHHHCC----CCEEEE
Confidence 5799999999644322 223332221 1245679999999999988888888887764 369999
Q ss_pred cccccccccccccCchhhHHhhhhHHHHHHHHHHhcccccccc---c-CCeEEEEecccccCCCCChhhhhhcccCCCCC
Q 008730 359 RGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHV---L-NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPP 434 (556)
Q Consensus 359 rGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lP~~~~---i-~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~ 434 (556)
+||||........ .+..+|-... + +.+++++||-+ .+.
T Consensus 78 ~GNhD~~~~~~~~--------------------~~~~l~~~~~l~~~~~~~i~~~H~~~-~~~----------------- 119 (195)
T 1xm7_A 78 MGNHDKDKESLKE--------------------YFDEIYDFYKIIEHKGKRILLSHYPA-KDP----------------- 119 (195)
T ss_dssp CCTTCCCHHHHTT--------------------TCSEEESSEEEEEETTEEEEEESSCS-SCS-----------------
T ss_pred eCCCCCchhhhhh--------------------hhhchhHHHHHHhcCCcEEEEEccCC-cCC-----------------
Confidence 9999985421100 0122332222 2 34799999743 110
Q ss_pred CccchhhhhcCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCCEEEeeccccccCceE
Q 008730 435 EEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEI 494 (556)
Q Consensus 435 ~~~~~~~llw~dp~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~ 494 (556)
.+. . +..+.+.+.+.++..+++++|-||.-....+.+
T Consensus 120 ----------~~~----~---------~~~~~~~l~~~~~~~~~~~vi~GHtH~~~~~~~ 156 (195)
T 1xm7_A 120 ----------ITE----R---------YPDRQEMVREIYFKENCDLLIHGHVHWNREGIK 156 (195)
T ss_dssp ----------SCC----S---------CHHHHHHHHHHHHHTTCSEEEECCCCCCSCC--
T ss_pred ----------Ccc----c---------ccchHHHHHHHHHHcCCcEEEECCcCCCCcccc
Confidence 000 0 013456788888889999999999987665543
No 210
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=98.68 E-value=1.6e-07 Score=94.46 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=48.6
Q ss_pred CCcceEeccCCC------------CHHHHHHHHHhcCC-CCCCCCeeeecccccCCCCh-HH-HHHHHHhccccCCCeEE
Q 008730 292 GKHFTVCGDVHG------------QFYDLLNIFELNGL-PSEENPYLFNGDFVDRGSFS-VE-VILTLFAFKCMCPSAIY 356 (556)
Q Consensus 292 ~~~i~vigDiHG------------~~~~l~~~l~~~~~-~~~~~~~vflGD~vdrG~~s-~e-~l~~l~~lk~~~p~~v~ 356 (556)
.++|+++||+|. ....|.++++.+.- ....+.+|++||++|.|... .+ +..++..+.....-.++
T Consensus 25 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~ 104 (330)
T 3ib7_A 25 DYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELV 104 (330)
T ss_dssp SEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEE
Confidence 468999999996 26777777776542 12346799999999998642 22 22333333111234599
Q ss_pred Eecccccc
Q 008730 357 LSRGNHES 364 (556)
Q Consensus 357 ~lrGNHE~ 364 (556)
+++||||.
T Consensus 105 ~v~GNHD~ 112 (330)
T 3ib7_A 105 WVMGNHDD 112 (330)
T ss_dssp ECCCTTSC
T ss_pred EeCCCCCC
Confidence 99999996
No 211
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.68 E-value=1.3e-07 Score=96.14 Aligned_cols=126 Identities=12% Similarity=0.038 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--------C
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEID--------P 79 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p 79 (556)
+..+..+|..+...|++++|+..+++++++.|.. ..++.++|.++...|++++|+..+++++++. |
T Consensus 53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 132 (373)
T 1hz4_A 53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 132 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc
Confidence 4456666666667777777777777766654432 1235566666777777777777777766653 2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHhhhhHHHHhcCC
Q 008730 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-----PDAAQKVKECEKAVKKLKFEEAIAVP 141 (556)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-----~~~~~~l~~~~~~~~~~~~~~Ai~~~ 141 (556)
....++.++|.++...|++++|+..+++++++.+.. ..++..++.++...|+ +++|....
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l 197 (373)
T 1hz4_A 133 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD--LDNARSQL 197 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence 234456666777777777777777777777666542 2345556666655555 45554443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.65 E-value=1.4e-07 Score=98.35 Aligned_cols=101 Identities=12% Similarity=0.143 Sum_probs=85.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CCCChHH
Q 008730 21 ANEAFRAKKYSQAIDLYSQAIEL-----NSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEI--------DPRYPKG 84 (556)
Q Consensus 21 g~~~~~~g~~~~Al~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~ 84 (556)
.......|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+..+++++++ +|+-...
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 44444568999999999999986 3555 567889999999999999999999999976 3444668
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDAAQK 121 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~ 121 (556)
++++|.+|..+|++++|+..|++|+++ .|+++.+...
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999999999996 6888776543
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.61 E-value=3.1e-07 Score=95.85 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-----SQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEI-------- 77 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-----p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------- 77 (556)
++........+..+|+|++|+..|+++++.. |++ ..++.++|.+|..+|+|++|+..+++++++
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 4555666777889999999999999999863 444 567899999999999999999999999976
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 008730 78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDAAQK 121 (556)
Q Consensus 78 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~ 121 (556)
+|+-...++++|.+|..+|++++|+..|++|+++ .|+++.+...
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 3344568999999999999999999999999996 6788766544
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.60 E-value=5.8e-07 Score=74.13 Aligned_cols=76 Identities=13% Similarity=-0.030 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730 49 VYYANRAFAHTKLEEYGSAIQDASKAIEID-------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (556)
Q Consensus 49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 121 (556)
.-++.+|..++..++|..|+.+|++|++.. +..+.++..+|.++.++|++++|+..++++++++|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 344555555555555555555555555542 2345566667777777777777777777777777777666666
Q ss_pred HHH
Q 008730 122 VKE 124 (556)
Q Consensus 122 l~~ 124 (556)
++.
T Consensus 86 ~~~ 88 (104)
T 2v5f_A 86 LKY 88 (104)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 215
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.59 E-value=1.8e-07 Score=95.21 Aligned_cols=129 Identities=15% Similarity=0.000 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-----
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----- 81 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----- 81 (556)
..+..+..+|..+...|++++|+..++++++..|... .++..+|.++...|++++|+..+++++++.|..
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3467788899999999999999999999999987653 367889999999999999999999999886543
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 82 -PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 82 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..++..+|.++...|++++|+..+++++++. |....++..++.++...|+ +++|.....
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 159 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--LDEAEASAR 159 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 2347889999999999999999999999985 3334567788888888877 566655554
No 216
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=98.59 E-value=6.6e-07 Score=87.21 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=48.8
Q ss_pred CcceEeccCCCCH------------HHHHHHHHhcCCC-CCCCCeeeecccccCCCChH--HHHHHHHhccccCCCeEEE
Q 008730 293 KHFTVCGDVHGQF------------YDLLNIFELNGLP-SEENPYLFNGDFVDRGSFSV--EVILTLFAFKCMCPSAIYL 357 (556)
Q Consensus 293 ~~i~vigDiHG~~------------~~l~~~l~~~~~~-~~~~~~vflGD~vdrG~~s~--e~l~~l~~lk~~~p~~v~~ 357 (556)
++|.+++|+|+.. ..|.++++.+.-. +..+.+|++||+++.|.... ++...+..+ +-.++.
T Consensus 1 mri~~iSD~H~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l----~~p~~~ 76 (274)
T 3d03_A 1 MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSL----NYPLYL 76 (274)
T ss_dssp CEEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTC----SSCEEE
T ss_pred CEEEEEecCCcCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhc----CCCEEE
Confidence 3689999999984 6788888766432 23467999999999987432 333344333 234999
Q ss_pred eccccccc
Q 008730 358 SRGNHESK 365 (556)
Q Consensus 358 lrGNHE~~ 365 (556)
++||||..
T Consensus 77 v~GNHD~~ 84 (274)
T 3d03_A 77 IPGNHDDK 84 (274)
T ss_dssp ECCTTSCH
T ss_pred ECCCCCCH
Confidence 99999974
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.59 E-value=4.1e-07 Score=75.01 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELN-------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 85 (556)
++..++.+|..++..|+|..|+..|++|++.. +..+.++..+|.++.++|++++|+..++++++++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 36789999999999999999999999999974 34578999999999999999999999999999999999998
Q ss_pred HHHH
Q 008730 86 YRRG 89 (556)
Q Consensus 86 ~~lg 89 (556)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 8887
No 218
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.58 E-value=5.4e-07 Score=78.46 Aligned_cols=88 Identities=20% Similarity=0.108 Sum_probs=46.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-
Q 008730 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA- 94 (556)
Q Consensus 20 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~- 94 (556)
+|..|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|++|.+. .++.+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 445555555555555555555544 345555555555555 45555555555555544 345555555555555
Q ss_pred ---cCCHHHHHHHHHHHHHh
Q 008730 95 ---MGKFKEALKDFQQVKKL 111 (556)
Q Consensus 95 ---~g~~~~A~~~~~~al~l 111 (556)
.+++++|+.+|++|.+.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHC
Confidence 55555555555555554
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.55 E-value=2.9e-07 Score=74.37 Aligned_cols=74 Identities=19% Similarity=0.113 Sum_probs=68.7
Q ss_pred ChhHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH
Q 008730 10 SVSRAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK 83 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~---~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 83 (556)
+|+++..+..+|.+++..++ .++|...++++++++|+++.++..+|..+++.|+|++|+..|+++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 56788999999999987776 799999999999999999999999999999999999999999999999998543
No 220
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.54 E-value=1.4e-06 Score=92.59 Aligned_cols=126 Identities=17% Similarity=0.104 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCCh
Q 008730 11 VSRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYP 82 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~ 82 (556)
+..+.+++.+|..|.. .+++++|+..|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 3457889999999998 89999999999999886 678999999999999 89999999999999875 578
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--hhhHHHHhcCCC
Q 008730 83 KGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK--KLKFEEAIAVPE 142 (556)
Q Consensus 83 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~--~~~~~~Ai~~~~ 142 (556)
.+++.+|.+|.. .+++++|+.+|+++.+. +++.++..++.++..-. ..++++|++.++
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999999999999 88999999999999875 57899999999887621 123566666554
No 221
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.54 E-value=3.4e-07 Score=96.47 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----hCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 15 EELKALANEAFRAK---KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL----EEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 15 ~~~~~lg~~~~~~g---~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
.+++.+|..+...| ++++|+..|+++.+..|..+..++++|.+|... +++++|+.+|+++. |.++.++++
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 37889999999999 999999999999999999999999999999765 69999999999998 899999999
Q ss_pred HHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---hhHHHHhcCCCC
Q 008730 88 RGAA-Y--LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK---LKFEEAIAVPES 143 (556)
Q Consensus 88 lg~~-~--~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~---~~~~~Ai~~~~~ 143 (556)
+|.+ + ...+++++|+.+|+++.+. +++.++..++.++. .|. .++++|+..+.+
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 9999 4 4689999999999999865 48999999999987 441 247777777663
No 222
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.50 E-value=2e-06 Score=91.30 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChH
Q 008730 12 SRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPK 83 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~ 83 (556)
..+.+++.+|..|.. .+++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 346788899999999 99999999999999875 578999999999998 88999999999999876 5789
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhhhHHHHhcCCC
Q 008730 84 GYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE 142 (556)
Q Consensus 84 ~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~----~~~~~~~~Ai~~~~ 142 (556)
+++.+|.+|.. .+++++|+++|+++++. .++.++..++.++.. .++ +++|+..+.
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~--~~~A~~~~~ 211 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERN--DAISAQWYR 211 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcC--HHHHHHHHH
Confidence 99999999998 88999999999999886 578999999998876 333 566666554
No 223
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.50 E-value=2.5e-07 Score=98.10 Aligned_cols=106 Identities=9% Similarity=0.058 Sum_probs=92.6
Q ss_pred CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-
Q 008730 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN-----SQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEI- 77 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-----p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l- 77 (556)
...+|..+..+.++|.+|..+|+|++|+.+|++++++. |++ +..+.++|.+|..+|+|++|+..|++|+++
T Consensus 344 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 344 ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999872 444 567999999999999999999999999975
Q ss_pred ----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730 78 ----DPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (556)
Q Consensus 78 ----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 112 (556)
.|+. .+...+++.++..++.+++|...|.++.+..
T Consensus 424 ~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 424 LVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554 5567889999999999999999999986544
No 224
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.48 E-value=1.1e-06 Score=76.47 Aligned_cols=106 Identities=25% Similarity=0.226 Sum_probs=91.3
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHH
Q 008730 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA----MGKFKEAL 102 (556)
Q Consensus 27 ~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~----~g~~~~A~ 102 (556)
.+++++|+..|+++.+.....+. +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 46799999999999998755444 999999999999999999999987 679999999999999 89999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----HhhhhHHHHhcCCC
Q 008730 103 KDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE 142 (556)
Q Consensus 103 ~~~~~al~l~p~~~~~~~~l~~~~~~----~~~~~~~~Ai~~~~ 142 (556)
.+|++|.+. .++.+...++.++.. .++ +++|+..+.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d--~~~A~~~~~ 121 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKN--EKQAVKTFE 121 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC--HHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC--HHHHHHHHH
Confidence 999999987 689999999999876 333 566655544
No 225
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.39 E-value=6.1e-06 Score=83.01 Aligned_cols=127 Identities=11% Similarity=-0.003 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH-------HHHHH-HHHH--HHHhCCC
Q 008730 14 AEELKALANEAFRAK---KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY-------GSAIQ-DASK--AIEIDPR 80 (556)
Q Consensus 14 a~~~~~lg~~~~~~g---~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-------~~A~~-~~~~--al~l~p~ 80 (556)
+-.++..|..++..+ ++.+|+.+|++|++++|+++.++..++.+|.....+ .+++. .++. ++..+|.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 555667788777654 458899999999999999999999988888643211 11111 2221 2356788
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (556)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~ 143 (556)
++.++..+|.++...|++++|+..+++|+.++|+ ..++..++.++...|+ .++|++.+..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~--~~eA~e~~~~ 335 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM--NREAADAYLT 335 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence 8999998988888889999999999999999874 6777888888888887 4555554443
No 226
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.34 E-value=1.3e-06 Score=91.85 Aligned_cols=123 Identities=15% Similarity=0.090 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHhhCHHHHHHHHHHHHHhCCCChH
Q 008730 11 VSRAEELKALANEAFRA----KKYSQAIDLYSQAIELNSQNAVYYANRAFA-H--TKLEEYGSAIQDASKAIEIDPRYPK 83 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~----g~~~~Al~~~~~al~~~p~~~~a~~~lg~~-~--~~~g~~~~A~~~~~~al~l~p~~~~ 83 (556)
+..+..++.+|..|... +++++|+..|+++. |.++.+++++|.+ + ...+++++|+.+|+++.+.. ++.
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~ 284 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPR 284 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHH
Confidence 44456668899988765 79999999999998 8999999999998 4 46789999999999998654 899
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--hhhHHHHhcCCC
Q 008730 84 GYYRRGAAYLAMG-----KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK--KLKFEEAIAVPE 142 (556)
Q Consensus 84 ~~~~lg~~~~~~g-----~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~--~~~~~~Ai~~~~ 142 (556)
+++++|.+|. .| ++++|+.+|++|. |.++.++..++.++..-. ..++++|+..+.
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 9999999998 56 9999999999998 899999999998886521 113566655554
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.34 E-value=3e-06 Score=81.90 Aligned_cols=107 Identities=7% Similarity=-0.016 Sum_probs=93.7
Q ss_pred CCChhHHHHHHHHHHHHHH-----cc------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh-----hCHHHHHH
Q 008730 8 NSSVSRAEELKALANEAFR-----AK------KYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKL-----EEYGSAIQ 69 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~-----~g------~~~~Al~~~~~al~~~p~--~~~a~~~lg~~~~~~-----g~~~~A~~ 69 (556)
+.+++.++.++-.|..... .| ...+|...++++++++|+ +..+|..+|..|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 4457778888888777754 13 357899999999999999 677999999999995 99999999
Q ss_pred HHHHHHHhCCCC-hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Q 008730 70 DASKAIEIDPRY-PKGYYRRGAAYLA-MGKFKEALKDFQQVKKLSPN 114 (556)
Q Consensus 70 ~~~~al~l~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~ 114 (556)
+|++|++++|+. ..+++..|..+.. .|++++|.+.+++|++..|.
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 999999999975 9999999999988 49999999999999999876
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.28 E-value=8.6e-06 Score=68.68 Aligned_cols=107 Identities=10% Similarity=0.075 Sum_probs=92.5
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHH---HHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCH
Q 008730 24 AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS---AIQDASKAIEID-P-RYPKGYYRRGAAYLAMGKF 98 (556)
Q Consensus 24 ~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~---A~~~~~~al~l~-p-~~~~~~~~lg~~~~~~g~~ 98 (556)
.....+...+...|.+.+..++.+..+.+++|.++.+..+..+ ++..++..+..+ | ..-+.+|.+|..++++|+|
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 3445566778888999999899999999999999999887666 999999998877 5 5678999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008730 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (556)
Q Consensus 99 ~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 130 (556)
++|+.+++..|+..|+|..+......+..+..
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~ 122 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAKELERLIDKAMK 122 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999888877765543
No 229
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=98.28 E-value=2.3e-06 Score=83.87 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=46.5
Q ss_pred CCcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCCh--HHHHHHHHhccccCCCeEEEecccccccc
Q 008730 292 GKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 292 ~~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s--~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 366 (556)
++||++|||+||+...+ ..+ ..|.+|+.||++|+|... .+++.+|..+. . ..++++.||||...
T Consensus 59 ~mri~~iSD~H~~~~~l-------~i~-~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l~--~-~~v~~V~GNHD~~~ 124 (296)
T 3rl5_A 59 HTRFVCISDTRSRTDGI-------QMP-YGDILLHTGDFTELGLPSEVKKFNDWLGNLP--Y-EYKIVIAGNHELTF 124 (296)
T ss_dssp EEEEEEEBCCTTCCTTC-------CCC-SCSEEEECSCCSSSCCHHHHHHHHHHHHTSC--C-SEEEECCCTTCGGG
T ss_pred CeEEEEEeeCCCCcchh-------ccC-CCCEEEECCcccCCCCHHHHHHHHHHHHhCC--C-CeEEEEcCCccccc
Confidence 47899999999987643 233 457799999999999742 33455555442 2 35899999999854
No 230
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.27 E-value=8e-06 Score=80.64 Aligned_cols=124 Identities=8% Similarity=-0.012 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----ChHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNS--QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYR 87 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~~ 87 (556)
...+..+|.++...|++++|+..+.+++..+| .+.+++..++.++.++|+.+.|.+.+++..+.+|+ +-....+
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 44557889999999999999999999998887 78889999999999999999999999999889883 2334455
Q ss_pred HHHH--HHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcC
Q 008730 88 RGAA--YLAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV 140 (556)
Q Consensus 88 lg~~--~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~ 140 (556)
++.+ ....| ++++|...|+++....|+.......+. ++..+|+ +++|.+.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~--~~eAe~~ 233 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRN--IAEAQGI 233 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTC--HHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCC--HHHHHHH
Confidence 5544 66666 899999999998877776333223333 6777776 5665443
No 231
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=98.24 E-value=2.9e-07 Score=89.20 Aligned_cols=72 Identities=6% Similarity=0.065 Sum_probs=52.2
Q ss_pred CcceEeccCCCCHHHHHHHHHhcCCCCCCCCeeeecccccCCCCh--------------------------HHHHHHHHh
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--------------------------VEVILTLFA 346 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s--------------------------~e~l~~l~~ 346 (556)
++|+++||+||+...+.++++.+... ..+.+|++||++|+|+.+ .+...++..
T Consensus 6 mri~~iSDlH~~~~~~~~~l~~~~~~-~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~ 84 (260)
T 2yvt_A 6 RKVLAIKNFKERFDLLPKLKGVIAEK-QPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFRE 84 (260)
T ss_dssp CEEEEEECCTTCGGGHHHHHHHHHHH-CCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCCChHHHHHHHHHHHhc-CCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHHHH
Confidence 57999999999999888888765322 346799999999999752 123334444
Q ss_pred ccccCCCeEEEecccccccc
Q 008730 347 FKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 347 lk~~~p~~v~~lrGNHE~~~ 366 (556)
|+. .+..++.++||||...
T Consensus 85 l~~-~~~pv~~v~GNHD~~~ 103 (260)
T 2yvt_A 85 IGE-LGVKTFVVPGKNDAPL 103 (260)
T ss_dssp HHT-TCSEEEEECCTTSCCH
T ss_pred HHh-cCCcEEEEcCCCCchh
Confidence 432 2346999999999754
No 232
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.24 E-value=6e-06 Score=95.18 Aligned_cols=119 Identities=12% Similarity=0.115 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----------
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---------- 80 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---------- 80 (556)
.+....|.++|.++...|++++|+..|.+| +++..|...|.++.++|+|++|+++|..|.+..++
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 1176 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHH
Confidence 345778999999999999999999999886 88999999999999999999999999887755532
Q ss_pred -----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCCC
Q 008730 81 -----------------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (556)
Q Consensus 81 -----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~~ 143 (556)
+...+..+|..+...|+|++|+.+|.+| ..|..++.++.++++ +++|++...+
T Consensus 1177 YAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge--~q~AIEaarK 1246 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE--YQAAVDGARK 1246 (1630)
T ss_pred HHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCC--HHHHHHHHHH
Confidence 2345677888888888888888888876 366777888888777 7888777764
Q ss_pred C
Q 008730 144 E 144 (556)
Q Consensus 144 ~ 144 (556)
+
T Consensus 1247 A 1247 (1630)
T 1xi4_A 1247 A 1247 (1630)
T ss_pred h
Confidence 4
No 233
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.19 E-value=2.3e-06 Score=88.40 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC---------------
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--------------- 79 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------------- 79 (556)
.+|..+|..++..|.|++|..+|.++ ..|..+|.|+.++|+|++|++.++++. +|
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKE 192 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCc
Confidence 37888888888888888888888876 467788888888888888888888882 22
Q ss_pred ------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 80 ------------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 80 ------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.+++-...+...|.+.|++++|+..+++++.+++.+...+..++.++.+-+-.+..++++.+.
T Consensus 193 f~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 193 FRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 112222334478889999999999999999999999999999999988777666777777665
No 234
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.14 E-value=7.5e-06 Score=71.66 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=73.9
Q ss_pred ChhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 008730 10 SVSRAEELKALANEAFRAK---KYSQAIDLYSQAIELN-S-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g---~~~~Al~~~~~al~~~-p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 84 (556)
.+.+.++.+++|.++.+.+ +.++|+..+++.++.+ | ...++++++|..++++|+|++|+++++++++++|++..+
T Consensus 28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3456889999999999988 7789999999999999 7 568999999999999999999999999999999999888
Q ss_pred HHHHHHHH
Q 008730 85 YYRRGAAY 92 (556)
Q Consensus 85 ~~~lg~~~ 92 (556)
...+..+-
T Consensus 108 ~~Lk~~ie 115 (152)
T 1pc2_A 108 KELERLID 115 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77655543
No 235
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.11 E-value=1.1e-05 Score=92.88 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC---------------
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--------------- 79 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------------- 79 (556)
..+...|..++..|+|++|+.+|.++ ..|..+|.++.++|++++|++.+++|...++
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence 45678999999999999999999996 4789999999999999999999999844432
Q ss_pred ----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 80 ----------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 80 ----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.+++.+..++..|...|.+++|+..+++++.++|.+...+..++.++.+-.-.+..++++.+.
T Consensus 1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 134456677888999999999999999999999999999988998888766666667766665
No 236
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=98.05 E-value=4.9e-05 Score=79.62 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=47.9
Q ss_pred CCcceEeccCCCC--------------------------HHHHHHHHHhcCCCCCCCCeeeecccccCCCCh--HHHHHH
Q 008730 292 GKHFTVCGDVHGQ--------------------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILT 343 (556)
Q Consensus 292 ~~~i~vigDiHG~--------------------------~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s--~e~l~~ 343 (556)
..+|++++|+|.. ...+.++++.+... ..+.+|++||+++.|... .++...
T Consensus 39 ~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~d~vi~~GDl~~~~~~~~~~~~~~~ 117 (443)
T 2xmo_A 39 NLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESK-KTDVLIISGDLTNNGEKTSHEELAKK 117 (443)
T ss_dssp CEEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHHH-TCSEEEEESCCBSSCCHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCCHHHHHHHHHH
Confidence 4579999999973 34556666554222 235799999999988743 233334
Q ss_pred HHhccccCCCeEEEecccccccc
Q 008730 344 LFAFKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 344 l~~lk~~~p~~v~~lrGNHE~~~ 366 (556)
+..+. ..+-.++.++||||...
T Consensus 118 l~~l~-~~~~~~~~v~GNHD~~~ 139 (443)
T 2xmo_A 118 LTQVE-KNGTQVFVVPGNHDINN 139 (443)
T ss_dssp HHHHH-HTTCEEEEECCTTTSSC
T ss_pred HHHHH-hCCCeEEEECCcCCCCC
Confidence 44442 12346999999999854
No 237
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=1.5e-05 Score=82.43 Aligned_cols=126 Identities=9% Similarity=0.040 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----------------VYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-----------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l 77 (556)
.+....|..+.+.|+|++|++.|.++++..|... .++.++|.+|...|++++|++.+.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3467788899999999999999999999887642 46889999999999999999999999987
Q ss_pred CCCChH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 78 DPRYPK------GYYRRGAAYLAMGKFKEALKDFQQVKKLSP------NDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 78 ~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p------~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
.+.... +...++.++...|++++|+..+++++...+ ....++..++.++...|+ +.+|+....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~ 159 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ--YKDSLALIN 159 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence 665432 455677888888999999999999988743 235677888888888887 677776654
No 238
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=2.9e-05 Score=80.21 Aligned_cols=129 Identities=11% Similarity=0.025 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC------
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDP------ 79 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p------ 79 (556)
....++..+|..|...|++++|+++|.+++...+... .+...+|.++...|++++|+..+++++...+
T Consensus 53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (434)
T 4b4t_Q 53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF 132 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence 3456789999999999999999999999999876543 3456678888888999999999999987633
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
....++.++|.+|...|++++|+..+++++... +....++..++.++..+++ +++|...+.
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~ 199 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN--LAKSKASLT 199 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc--HHHHHHHHH
Confidence 236789999999999999999999999998872 3335678888888888887 566665554
No 239
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.00 E-value=3.6e-05 Score=75.95 Aligned_cols=118 Identities=12% Similarity=-0.041 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHH--HHHhh--CHHHHHHHHHHHHHhCCC--
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFA--HTKLE--EYGSAIQDASKAIEIDPR-- 80 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~----~~~a~~~lg~~--~~~~g--~~~~A~~~~~~al~l~p~-- 80 (556)
....+.+...+.++.+.|+.+.|.+.+++..+.+|+ +-....+++.+ .+..| ++++|...|+++.+..|+
T Consensus 133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~ 212 (310)
T 3mv2_B 133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK 212 (310)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence 477888999999999999999999999999999983 33445556555 55556 899999999999888886
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHhh
Q 008730 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL----------SPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----------~p~~~~~~~~l~~~~~~~~~ 131 (556)
.+..+++ ++..+|++++|.+.++++++. +|+++.++.++..+...+|+
T Consensus 213 ~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 213 TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 3444454 899999999999999988876 58899999888888777775
No 240
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.83 E-value=3.4e-05 Score=80.36 Aligned_cols=89 Identities=8% Similarity=0.007 Sum_probs=73.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN-----SQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (556)
Q Consensus 6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-----p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 77 (556)
....+|..+..+.++|.+|..+|+|++|+.+++++++.. |++ +..++++|.+|..+|++++|+..|++|+++
T Consensus 321 lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 321 LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999862 444 567999999999999999999999999976
Q ss_pred -----CCCChH---HHHHHHHHHHH
Q 008730 78 -----DPRYPK---GYYRRGAAYLA 94 (556)
Q Consensus 78 -----~p~~~~---~~~~lg~~~~~ 94 (556)
.|+.+. ++.+++.+...
T Consensus 401 ~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 401 MRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHH
Confidence 455544 44555555543
No 241
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.77 E-value=0.0002 Score=69.27 Aligned_cols=97 Identities=11% Similarity=0.024 Sum_probs=78.4
Q ss_pred hCCCCHHHHHHHHHHHHH---h--h------CHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHc-----CCHHHHHHH
Q 008730 43 LNSQNAVYYANRAFAHTK---L--E------EYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLAM-----GKFKEALKD 104 (556)
Q Consensus 43 ~~p~~~~a~~~lg~~~~~---~--g------~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~~-----g~~~~A~~~ 104 (556)
.+|+++++++..|..... . | ....|...+++|+++||+ +..+|..+|..|... |+.++|.++
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 467788888888877654 2 2 367899999999999999 677999999999995 999999999
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHH-hhhhHHHHhcCC
Q 008730 105 FQQVKKLSPND-PDAAQKVKECEKAV-KKLKFEEAIAVP 141 (556)
Q Consensus 105 ~~~al~l~p~~-~~~~~~l~~~~~~~-~~~~~~~Ai~~~ 141 (556)
|++|++++|+. ..++..++..+... ++ ++++.+..
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd--~~~a~~~L 263 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNN--RAGFDEAL 263 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTC--HHHHHHHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCC--HHHHHHHH
Confidence 99999999975 99999999887653 44 34444433
No 242
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.75 E-value=5.5e-05 Score=78.79 Aligned_cols=78 Identities=17% Similarity=0.089 Sum_probs=68.3
Q ss_pred CCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-
Q 008730 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEI- 77 (556)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-----~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l- 77 (556)
...+|..+..+.++|.+|..+|+|++|+.+|++++++ .|+ -+..++++|.+|..+|+|++|+..|++|+++
T Consensus 333 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 333 EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999987 244 4567999999999999999999999999976
Q ss_pred ----CCCChHH
Q 008730 78 ----DPRYPKG 84 (556)
Q Consensus 78 ----~p~~~~~ 84 (556)
.|+.+.+
T Consensus 413 ~~~lG~~Hp~~ 423 (433)
T 3qww_A 413 EVAHGKDHPYI 423 (433)
T ss_dssp HHHTCTTCHHH
T ss_pred HHHcCCCChHH
Confidence 5666544
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.63 E-value=0.0016 Score=55.69 Aligned_cols=86 Identities=9% Similarity=0.060 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008730 45 SQNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (556)
Q Consensus 45 p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 120 (556)
.-...+.+++|-++.+..+ ..+++..++..+..+|. .-+.+|.+|..++++|+|++|+.+.+..|+..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4578899999999998765 55799999999999984 5789999999999999999999999999999999999988
Q ss_pred HHHHHHHHHh
Q 008730 121 KVKECEKAVK 130 (556)
Q Consensus 121 ~l~~~~~~~~ 130 (556)
....+..+..
T Consensus 116 Lk~~Ie~~i~ 125 (144)
T 1y8m_A 116 LKSMVEDKIQ 125 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777765543
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.60 E-value=0.00069 Score=57.20 Aligned_cols=97 Identities=9% Similarity=0.014 Sum_probs=79.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008730 34 IDLYSQAIELNSQNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (556)
Q Consensus 34 l~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al 109 (556)
.+.|.+-+ ...-.+.+.+++|-++.+..+ ..+++..++..++.+|. .-+.+|.+|..++++|+|++|+++.+.+|
T Consensus 27 ~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 27 RQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444433 233357889999999988765 55799999999999984 57899999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHhh
Q 008730 110 KLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 110 ~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
+..|+|..+......+..+..+
T Consensus 106 ~~eP~N~QA~~Lk~~Ie~ki~k 127 (134)
T 3o48_A 106 EHERNNKQVGALKSMVEDKIQK 127 (134)
T ss_dssp TTCTTCHHHHHHHHHHHHHHHH
T ss_pred hhCCCCHHHHHHHHHHHHHHHh
Confidence 9999999998888877766553
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.58 E-value=0.00044 Score=60.84 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---CC--
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------AVYYANRAFAHTKLEEYGSAIQDASKAIEID---PR-- 80 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~-- 80 (556)
.++.+-...++..|.|+.|+-....++.+..++ ..++..+|.+++..++|..|...|++|++.. ++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456778889999999999999999977765333 3478899999999999999999999997652 11
Q ss_pred --------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008730 81 --------------------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (556)
Q Consensus 81 --------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 126 (556)
+.+..|.+|.||.+++++++|+..++..-. .-..+.+...+|++|
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 126889999999999999999988775311 123466666666554
No 246
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.56 E-value=5.7e-05 Score=77.98 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------------------CCCHHHHHHHHHHHHHhhCHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELN---------------------------SQNAVYYANRAFAHTKLEEYGSA 67 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~---------------------------p~~~~a~~~lg~~~~~~g~~~~A 67 (556)
..+...+..+...|+|++|+.+++.+++.. +.+..+|.++|.++...|+|++|
T Consensus 62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA 141 (449)
T 1b89_A 62 SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAA 141 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTTCC----------------CTTTH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHH
Confidence 345555555555566666665555555321 12335788899999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 68 IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 68 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
..+|.++ ..|..+|.++.++|++++|++.+++| .++.+|.....+....++ ++.|.....
T Consensus 142 ~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~e--f~lA~~~~l 201 (449)
T 1b89_A 142 KLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE--FRLAQMCGL 201 (449)
T ss_dssp HHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC--HHHHHHTTT
T ss_pred HHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCc--HHHHHHHHH
Confidence 9999877 47889999999999999999999999 478888888888777776 677755443
No 247
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=97.54 E-value=7e-05 Score=76.92 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=50.3
Q ss_pred CCcceEeccCCCCH-------------HHHHHHHHhcCCCCCCCCeeeecccccCCCChHH----HHHHHHhccccCCCe
Q 008730 292 GKHFTVCGDVHGQF-------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVE----VILTLFAFKCMCPSA 354 (556)
Q Consensus 292 ~~~i~vigDiHG~~-------------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e----~l~~l~~lk~~~p~~ 354 (556)
.++|++++|+|+.. ..|.++++.+.-. ..+.+|+.||++|++..+.+ +..+|..|+. .+-.
T Consensus 20 ~mrilhiSD~Hlg~~~~~~~~r~~~~~~~l~~~v~~~~~~-~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~-~~~p 97 (386)
T 3av0_A 20 HMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEI-KPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHE-NNIK 97 (386)
T ss_dssp CCEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHH-TTCE
T ss_pred CeEEEEEccCCCCccccCcchhhHHHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHh-cCCc
Confidence 57899999999762 3566777665432 34679999999999954433 3344444432 2346
Q ss_pred EEEecccccccc
Q 008730 355 IYLSRGNHESKS 366 (556)
Q Consensus 355 v~~lrGNHE~~~ 366 (556)
|+++.||||...
T Consensus 98 v~~v~GNHD~~~ 109 (386)
T 3av0_A 98 VYIVAGNHEMPR 109 (386)
T ss_dssp EEECCCGGGSCS
T ss_pred EEEEcCCCCCCc
Confidence 999999999754
No 248
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=97.53 E-value=3.2e-05 Score=76.75 Aligned_cols=72 Identities=21% Similarity=0.070 Sum_probs=48.1
Q ss_pred CcceEeccCCCCH-------------------HHHHHHHHhcCCCCCCCCeeeecccccCCCC----hHHHHHHHHhccc
Q 008730 293 KHFTVCGDVHGQF-------------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSF----SVEVILTLFAFKC 349 (556)
Q Consensus 293 ~~i~vigDiHG~~-------------------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~----s~e~l~~l~~lk~ 349 (556)
.+|++|+|+|... ..|.++++.+.-. ..+.+|++||+++.|.. +.+.+..+...-.
T Consensus 6 ~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~ 84 (322)
T 2nxf_A 6 FTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRE-RVQCVVQLGDIIDGHNRRRDASDRALDTVMAELD 84 (322)
T ss_dssp EEEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHH
T ss_pred eEEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHhc-CCCEEEECCCccCCCCCcchHHHHHHHHHHHHHH
Confidence 4699999999875 5566666654322 34569999999998751 2333333333222
Q ss_pred cCCCeEEEeccccccc
Q 008730 350 MCPSAIYLSRGNHESK 365 (556)
Q Consensus 350 ~~p~~v~~lrGNHE~~ 365 (556)
..+..+++++||||..
T Consensus 85 ~~~~p~~~v~GNHD~~ 100 (322)
T 2nxf_A 85 ACSVDVHHVWGNHEFY 100 (322)
T ss_dssp TTCSEEEECCCHHHHH
T ss_pred hcCCcEEEecCCCCcc
Confidence 2345799999999985
No 249
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=97.50 E-value=3.3e-05 Score=77.84 Aligned_cols=73 Identities=23% Similarity=0.215 Sum_probs=46.2
Q ss_pred CCCcceEeccCC-C----C-----------HHHHHHHHHhcCCCCCCCCeeeecc-cccCCCChHHH----HHHHHhccc
Q 008730 291 DGKHFTVCGDVH-G----Q-----------FYDLLNIFELNGLPSEENPYLFNGD-FVDRGSFSVEV----ILTLFAFKC 349 (556)
Q Consensus 291 ~~~~i~vigDiH-G----~-----------~~~l~~~l~~~~~~~~~~~~vflGD-~vdrG~~s~e~----l~~l~~lk~ 349 (556)
..++|+.++|+| | . ...|.++++.+.-. ..+.+|+.|| ++|++..+.+. ..+|..|..
T Consensus 17 ~~mrilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~~-~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~ 95 (336)
T 2q8u_A 17 KELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMR 95 (336)
T ss_dssp CEEEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHH-TCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHHh-CCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHh
Confidence 357899999999 8 3 34556666544322 2356999999 99999877664 445555542
Q ss_pred cCCCeEEEecccccccc
Q 008730 350 MCPSAIYLSRGNHESKS 366 (556)
Q Consensus 350 ~~p~~v~~lrGNHE~~~ 366 (556)
. -.|+++.||||...
T Consensus 96 ~--~pv~~i~GNHD~~~ 110 (336)
T 2q8u_A 96 T--APVVVLPGNHDWKG 110 (336)
T ss_dssp H--SCEEECCC------
T ss_pred c--CCEEEECCCCCccc
Confidence 2 25999999999754
No 250
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.47 E-value=0.0013 Score=72.35 Aligned_cols=121 Identities=13% Similarity=0.029 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHhhCHHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-----------NSQ-----------NAVYYANRAFAHTKLEEYGSAI 68 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-----------~p~-----------~~~a~~~lg~~~~~~g~~~~A~ 68 (556)
|.....|...+......|++++|...|++++.. .|. ...+|...+....+.|+.+.|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 445667888899999999999999999999985 253 3567889999888999999999
Q ss_pred HHHHHHHHh-CCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 69 QDASKAIEI-DPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 69 ~~~~~al~l-~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
..|.+|++. .+.....|...|.+....++ ++.|.+.|+++++..|+++..+..++......++
T Consensus 455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC
Confidence 999999988 55567888888887777654 8999999999999999999998888877766665
No 251
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.46 E-value=0.0019 Score=55.64 Aligned_cols=109 Identities=17% Similarity=0.036 Sum_probs=94.8
Q ss_pred ChhHHHHHHHHHHHHHHccCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 008730 10 SVSRAEELKALANEAFRAKKY------SQAIDLYSQAIELNSQN--------AVYYANRAFAHTKLEEYGSAIQDASKAI 75 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~------~~Al~~~~~al~~~p~~--------~~a~~~lg~~~~~~g~~~~A~~~~~~al 75 (556)
.|++.+.|.......-+.|+. ++-++.|++|+..-|.. ...|...|.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 567788999999999988999 89999999999987753 4556667754 67799999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730 76 EIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (556)
Q Consensus 76 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 119 (556)
.+....+..|...|..-.++|+...|++.+.+|+.+.|...+.+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 99888999999999999999999999999999999999876654
No 252
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.44 E-value=0.00057 Score=68.70 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=71.0
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008730 40 AIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (556)
Q Consensus 40 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 117 (556)
++..+|.++.++..+|..+...|++++|+..+++|+.++|+ +.+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 44678999999999999999999999999999999999974 778899999999999999999999999999998753
No 253
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=97.42 E-value=9.2e-05 Score=74.44 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=46.8
Q ss_pred CcceEeccCCCCH-------------HHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHH----HHHhccccCCCeE
Q 008730 293 KHFTVCGDVHGQF-------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVIL----TLFAFKCMCPSAI 355 (556)
Q Consensus 293 ~~i~vigDiHG~~-------------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~----~l~~lk~~~p~~v 355 (556)
++|++++|+|+.. ..|.++++.+.-. ..+.+|+.||++|++..+.+.+. ++..++. .+-.|
T Consensus 1 mkilh~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~-~~~~v 78 (333)
T 1ii7_A 1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQE-NVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKE-HSIPV 78 (333)
T ss_dssp CEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHT-TCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHT-TTCCE
T ss_pred CEEEEEcccCCCCcccCCchhhHHHHHHHHHHHHHHHhc-CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHH-CCCcE
Confidence 4689999999864 3455555544322 23579999999999854544333 3333331 22459
Q ss_pred EEeccccccc
Q 008730 356 YLSRGNHESK 365 (556)
Q Consensus 356 ~~lrGNHE~~ 365 (556)
+++.||||..
T Consensus 79 ~~v~GNHD~~ 88 (333)
T 1ii7_A 79 FAIEGNHDRT 88 (333)
T ss_dssp EEECCTTTCC
T ss_pred EEeCCcCCCc
Confidence 9999999975
No 254
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.39 E-value=0.00097 Score=73.33 Aligned_cols=81 Identities=12% Similarity=0.001 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHH-HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008730 31 SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAI-QDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (556)
Q Consensus 31 ~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 109 (556)
+.....|++++...|.++..|...+..+...|+.++|. ..|++|+...|.+...|+.++......|++++|.+.|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34556677777777777777777777666667666675 77777777777776667777777777777777777777776
Q ss_pred Hh
Q 008730 110 KL 111 (556)
Q Consensus 110 ~l 111 (556)
..
T Consensus 406 ~~ 407 (679)
T 4e6h_A 406 DR 407 (679)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 255
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.21 E-value=0.0011 Score=55.80 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQ---AIDLYSQAIELN-S-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~---Al~~~~~al~~~-p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
...++.+++|.++.+..+..+ ++..++..++.+ | ..-++++.+|..++++|+|++|..+++..++.+|+|..+.-
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 557888999999998887777 999999999987 5 56788999999999999999999999999999999988877
Q ss_pred HHHHHH
Q 008730 87 RRGAAY 92 (556)
Q Consensus 87 ~lg~~~ 92 (556)
....+-
T Consensus 113 Lk~~i~ 118 (126)
T 1nzn_A 113 LERLID 118 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.90 E-value=0.0076 Score=50.85 Aligned_cols=82 Identities=9% Similarity=-0.015 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 008730 12 SRAEELKALANEAFRAKKY---SQAIDLYSQAIELNSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~---~~Al~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 87 (556)
..+++.++.|..+.+..+- .+++..++..++.+|. .-+.++.+|..++++|+|++|..+++.+++.+|+|..+.-.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3568889999999888755 4699999999999984 57889999999999999999999999999999999888766
Q ss_pred HHHHHH
Q 008730 88 RGAAYL 93 (556)
Q Consensus 88 lg~~~~ 93 (556)
...+-.
T Consensus 118 k~~Ie~ 123 (134)
T 3o48_A 118 KSMVED 123 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 257
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.89 E-value=0.017 Score=60.99 Aligned_cols=118 Identities=8% Similarity=-0.103 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---------------------------------
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA--------------------------------- 57 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~--------------------------------- 57 (556)
|..+..|...+..+...|+.++|...|++|+.. |.+...|...+..
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence 334667777777778888888888888888888 8775554433332
Q ss_pred -------HHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730 58 -------HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (556)
Q Consensus 58 -------~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 129 (556)
..+.++.+.|...|.+| +..+.....|...|......+ +.+.|...|+++++..|+++..+..+.......
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 12345566666666666 322224455555555555444 466677777777776666666554444444444
Q ss_pred h
Q 008730 130 K 130 (556)
Q Consensus 130 ~ 130 (556)
+
T Consensus 368 ~ 368 (493)
T 2uy1_A 368 G 368 (493)
T ss_dssp T
T ss_pred C
Confidence 3
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.85 E-value=0.011 Score=50.54 Aligned_cols=82 Identities=9% Similarity=0.005 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHHccCHH---HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 008730 11 VSRAEELKALANEAFRAKKYS---QAIDLYSQAIELNSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~---~Al~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 86 (556)
....++.+++|..+.+..+-+ +++..++..++.+|. .-+.++.+|..++++|+|++|..+++..++.+|+|..+.-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 456788999999999887655 699999999999885 5688999999999999999999999999999999988776
Q ss_pred HHHHHH
Q 008730 87 RRGAAY 92 (556)
Q Consensus 87 ~lg~~~ 92 (556)
....+-
T Consensus 116 Lk~~Ie 121 (144)
T 1y8m_A 116 LKSMVE 121 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 259
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=96.80 E-value=0.00028 Score=72.17 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=45.7
Q ss_pred CcceEeccCCCCHH----------------HHHHHHHhcCCCCCCCCeeeecccc-cCCCChHHHHH----HHHhccccC
Q 008730 293 KHFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFV-DRGSFSVEVIL----TLFAFKCMC 351 (556)
Q Consensus 293 ~~i~vigDiHG~~~----------------~l~~~l~~~~~~~~~~~~vflGD~v-drG~~s~e~l~----~l~~lk~~~ 351 (556)
++|+.++|+|.... .|.++++.+.-. ..+.+|+.||++ |++..+.+.+. ++..|+..
T Consensus 1 mrilh~SD~Hlg~~~~~~~~g~~~~~~~~~~l~~l~~~~~~~-~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~- 78 (379)
T 3tho_B 1 MKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT- 78 (379)
T ss_dssp CEEEEECCCCBTCEECSSSSCEECHHHHHHHHHHHHHHHHHH-TCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHH-
T ss_pred CeEEEEcccCCCCCccccccCcChhHHHHHHHHHHHHHHHhc-CCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhC-
Confidence 46899999996543 445555443222 235699999999 98877655443 33334322
Q ss_pred CCeEEEecccccc
Q 008730 352 PSAIYLSRGNHES 364 (556)
Q Consensus 352 p~~v~~lrGNHE~ 364 (556)
-.|+++.||||.
T Consensus 79 -~~v~~i~GNHD~ 90 (379)
T 3tho_B 79 -APVVVLPGNQDW 90 (379)
T ss_dssp -SCEEECCCTTSC
T ss_pred -CCEEEEcCCCcc
Confidence 359999999994
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.76 E-value=0.0039 Score=54.85 Aligned_cols=81 Identities=22% Similarity=0.161 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------C-------------------CCHHHHHHHHHHHHHhhCHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELN------S-------------------QNAVYYANRAFAHTKLEEYG 65 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~------p-------------------~~~~a~~~lg~~~~~~g~~~ 65 (556)
...++.+..+|+.++..++|.+|+..|++||... + .+.+..+.++.||.++++++
T Consensus 60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~ 139 (167)
T 3ffl_A 60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK 139 (167)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence 4567899999999999999999999999998652 1 12378899999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 66 SAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 66 ~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
+|+..++..-... ..++.-..+|..|
T Consensus 140 ~Ai~~Le~Ip~k~-Rt~kvnm~LakLy 165 (167)
T 3ffl_A 140 DAIAILDGIPSRQ-RTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHTSCGGG-CCHHHHHHHHHHC
T ss_pred HHHHHHhcCCchh-cCHHHHHHHHHHh
Confidence 9999987643222 4677878888765
No 261
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=96.69 E-value=0.00098 Score=69.09 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=38.5
Q ss_pred CCcceEeccCCCC------------HHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHH
Q 008730 292 GKHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLF 345 (556)
Q Consensus 292 ~~~i~vigDiHG~------------~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~ 345 (556)
.++|+.++|+|-. ...|.++++.+.-. ..+.+|+.||++|++..+.+++..++
T Consensus 76 ~mrilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~~-~~D~VliaGDLfd~~~ps~~a~~~~~ 140 (472)
T 4fbk_A 76 TIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARER-DVDMILLGGDIFHDNKPSRKALYQAL 140 (472)
T ss_dssp CEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCSBSSSSCCHHHHHHHH
T ss_pred CeEEEEEecccCCCcccCcccchhHHHHHHHHHHHHHhc-CCCEEEEcCccccCCCCCHHHHHHHH
Confidence 4579999999963 33566666655332 34679999999999999888766443
No 262
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=96.65 E-value=0.0013 Score=67.54 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=39.9
Q ss_pred CCCCcceEeccCCCC------------HHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHH
Q 008730 290 PDGKHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLF 345 (556)
Q Consensus 290 ~~~~~i~vigDiHG~------------~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~ 345 (556)
.+..+++.++|+|-. ...|.++++.+.-. ..+.+|+.||++|++..+.+++..++
T Consensus 11 ~~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~~-~~D~VliaGDLfd~~~p~~~~~~~~~ 77 (417)
T 4fbw_A 11 ENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARER-DVDMILLGGDIFHDNKPSRKALYQAL 77 (417)
T ss_dssp TTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBSSSSCCHHHHHHHH
T ss_pred CCCeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHhc-CCCEEEEcCccccCCCCCHHHHHHHH
Confidence 345789999999964 34566666655332 34679999999999999887766543
No 263
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=96.62 E-value=0.00081 Score=69.36 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=38.6
Q ss_pred CCCcceEeccCCCC------------HHHHHHHHHhcCCCCCCCCeeeecccccCCCChHHHHHHHHh
Q 008730 291 DGKHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFA 346 (556)
Q Consensus 291 ~~~~i~vigDiHG~------------~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~ 346 (556)
+.++|+.++|+|-. ...|.++++.+.-. ..+.+|+.||++|++..+.+++..++.
T Consensus 31 ~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~~-~~D~VliaGDlfd~~~~~~~~~~~~~~ 97 (431)
T 3t1i_A 31 NTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQEN-EVDFILLGGDLFHENKPSRKTLHTCLE 97 (431)
T ss_dssp GEEEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBSSSSCCHHHHHHHHH
T ss_pred CCEEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhhc-CCCEEEEcCccccCCCCCHHHHHHHHH
Confidence 34689999999943 23556666544332 345799999999999888777665544
No 264
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.41 E-value=0.045 Score=55.81 Aligned_cols=99 Identities=18% Similarity=0.104 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhhCHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----------------------AVYYANRAFAHTKLEEYGSAIQ 69 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----------------------~~a~~~lg~~~~~~g~~~~A~~ 69 (556)
...+.+...|......|+.++|...+++|+.+.... ..+...++.++...|++++|+.
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~ 192 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 192 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 344556666777778899999999999999985321 1224456677788899999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008730 70 DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (556)
Q Consensus 70 ~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 110 (556)
.+++++..+|-+-.+|..+-.+|+..|+..+|++.|+++-+
T Consensus 193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999988999999999999999999998887754
No 265
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=96.38 E-value=0.0013 Score=64.80 Aligned_cols=73 Identities=16% Similarity=0.004 Sum_probs=41.3
Q ss_pred CCcceEeccCCCCH---------HHHHHHHHh-cCCCCCCCCeeeecccccC-CC---ChHHHHHHHHhccc---cCCCe
Q 008730 292 GKHFTVCGDVHGQF---------YDLLNIFEL-NGLPSEENPYLFNGDFVDR-GS---FSVEVILTLFAFKC---MCPSA 354 (556)
Q Consensus 292 ~~~i~vigDiHG~~---------~~l~~~l~~-~~~~~~~~~~vflGD~vdr-G~---~s~e~l~~l~~lk~---~~p~~ 354 (556)
..+++++||+|+.. ..+.+.+.. +.. ...+.+|++||+++. |. ...+....+..+.. ..+-.
T Consensus 6 ~~~~~~isD~h~~~~~~~~~~~~~~~~~~l~~~~~~-~~~d~vv~~GD~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~p 84 (313)
T 1ute_A 6 ILRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKT-LGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVP 84 (313)
T ss_dssp CEEEEEECSCCCCSSTTSSCHHHHHHHHHHHHHHHH-HCCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCC
T ss_pred ceEEEEEcccCCCCCccccCchHHHHHHHHHHHHHh-cCCCEEEECCCccCcCCCCCcchHHHHHHHHHHcCchhhcCCC
Confidence 45799999999863 234333332 111 123569999999753 11 12233333322211 11356
Q ss_pred EEEeccccccc
Q 008730 355 IYLSRGNHESK 365 (556)
Q Consensus 355 v~~lrGNHE~~ 365 (556)
++.+.||||..
T Consensus 85 ~~~v~GNHD~~ 95 (313)
T 1ute_A 85 WHVLAGNHDHL 95 (313)
T ss_dssp EEECCCHHHHH
T ss_pred EEEECCCCccC
Confidence 99999999974
No 266
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=96.18 E-value=0.0043 Score=64.29 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=43.6
Q ss_pred CcceEeccCCCCHHHHHHHHHhcC-CCCCCCCeeeecccccCCCCh-------HHHHHHHHhccccCCCeEEEecccccc
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFS-------VEVILTLFAFKCMCPSAIYLSRGNHES 364 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~-~~~~~~~~vflGD~vdrG~~s-------~e~l~~l~~lk~~~p~~v~~lrGNHE~ 364 (556)
.+++++||+|....... .++.+. .....+-+|++||+++.+... -+...++..+.... -++.+.||||.
T Consensus 120 ~~f~~igD~~~~~~~~~-~l~~~~~~~~~~D~vl~~GDl~y~~~~~~~~~~~~~~~~~~l~~~~~~~--P~~~v~GNHD~ 196 (424)
T 2qfp_A 120 YTFGLIGDLGQSFDSNT-TLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQ--PWIWTAGNHEI 196 (424)
T ss_dssp EEEEEECSCTTBHHHHH-HHHHHHTCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHHHHTTS--CEEECCCHHHH
T ss_pred eEEEEEEeCCCCCChHH-HHHHHHhCCCCCCEEEEcCccccccccccccchHHHHHHHHHHHHHhcC--CeEeecCCccc
Confidence 47999999998865542 334332 222346799999999864211 11223333333333 48889999997
Q ss_pred cc
Q 008730 365 KS 366 (556)
Q Consensus 365 ~~ 366 (556)
..
T Consensus 197 ~~ 198 (424)
T 2qfp_A 197 EF 198 (424)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 267
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.98 E-value=0.15 Score=53.82 Aligned_cols=115 Identities=11% Similarity=-0.017 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 91 (556)
....|...+....+.++.+.|...|.+| ...+.....|...|......+ +.+.|...|+.+++..|+.+..+...+..
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3466788888888889999999999999 444446677777777777667 59999999999999999999988888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
....|+.+.|...|+++ +.....+..........|..
T Consensus 364 e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCH
T ss_pred HHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCH
Confidence 89999999999999998 45677777777776666653
No 268
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=95.74 E-value=0.0076 Score=62.47 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=41.6
Q ss_pred CcceEeccCCCCHHHHHHHHHhcC-CCCCCCCeeeecccccCCCC-----h-HH-HHHHHHhccccCCCeEEEecccccc
Q 008730 293 KHFTVCGDVHGQFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSF-----S-VE-VILTLFAFKCMCPSAIYLSRGNHES 364 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l~~~l~~~~-~~~~~~~~vflGD~vdrG~~-----s-~e-~l~~l~~lk~~~p~~v~~lrGNHE~ 364 (556)
.+++++||+|...... +.++.+. ....-+-+|++||+++.+.. . .+ ....+..+.... -++.+.||||.
T Consensus 127 ~~f~~~gD~~~~~~~~-~~l~~i~~~~~~~D~vl~~GD~~y~~~~~~~~~~~~~~~~~~l~~l~~~~--P~~~v~GNHD~ 203 (426)
T 1xzw_A 127 YVFGLIGDIGQTHDSN-TTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVAYQ--PWIWTAGNHEI 203 (426)
T ss_dssp EEEEEECSCTTBHHHH-HHHHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHHHTTS--CEECCCCGGGC
T ss_pred eEEEEEEeCCCCCchH-HHHHHHHhCCCCCCEEEeCCChhhcccCCcccchHHHHHHHHHHHHHhcC--CEEEecccccc
Confidence 5799999999875322 2222221 11234569999999965321 1 11 223333333333 48889999998
Q ss_pred cc
Q 008730 365 KS 366 (556)
Q Consensus 365 ~~ 366 (556)
..
T Consensus 204 ~~ 205 (426)
T 1xzw_A 204 DY 205 (426)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 269
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.15 E-value=0.1 Score=54.72 Aligned_cols=80 Identities=9% Similarity=0.008 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008730 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (556)
Q Consensus 50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 129 (556)
.+..+|........++.|..+|.+|..+.|++..++..+|.+....|+.-+|+-+|-+++......+.+..++.......
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 45667888888888999999999999999999999999999999999999999999999999888899999998876543
No 270
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.049 Score=60.02 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008730 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (556)
Q Consensus 50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 108 (556)
.+..-+..+...|+|+-|+...++|+...|....+|+.|+.+|..+|+|+.|+-.++.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44445666778999999999999999999999999999999999999999999877765
No 271
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.01 E-value=0.35 Score=50.97 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-YPKGYYRRGAAY 92 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 92 (556)
..|..+-..+.+.|++++|++.|++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+..-. +...|..+-.++
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 345555555666666666666666555432 224555555555566666666666666655543211 344555555566
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 008730 93 LAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 93 ~~~g~~~~A~~~~~~al~l 111 (556)
.+.|+.++|.+.+++.-+.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHHh
Confidence 6666666666666655443
No 272
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.96 E-value=0.54 Score=41.20 Aligned_cols=99 Identities=13% Similarity=0.063 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH--h---------------C
Q 008730 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE--I---------------D 78 (556)
Q Consensus 16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l---------------~ 78 (556)
.-..++..++-.|+|..|+-.+. .-+...+.+..+.||.++++|..|+..+++.+. . |
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred HHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 34556778888899988886654 345577778889999999999999999999883 2 2
Q ss_pred CCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730 79 PRYPK-GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (556)
Q Consensus 79 p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 119 (556)
|.+-+ .+..+|.++.+.|+-+||+.++......+|-.+.+-
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 33434 455668899999999999999999999888655543
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.83 E-value=0.25 Score=46.89 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=57.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH
Q 008730 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK 83 (556)
Q Consensus 22 ~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 83 (556)
..+++.|+.++|++.....++.+|.++.....+-..+.-.|+++.|...++.+.+++|+...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 45678999999999999999999999999999999999999999999999999999998644
No 274
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=94.55 E-value=0.0097 Score=59.61 Aligned_cols=69 Identities=9% Similarity=0.023 Sum_probs=41.5
Q ss_pred CcceEeccCCCCHHHH-------HHHHHhcCCCCCCCCeeeecccccCCCChH------HHHHHHHhcc-ccCCCeEEEe
Q 008730 293 KHFTVCGDVHGQFYDL-------LNIFELNGLPSEENPYLFNGDFVDRGSFSV------EVILTLFAFK-CMCPSAIYLS 358 (556)
Q Consensus 293 ~~i~vigDiHG~~~~l-------~~~l~~~~~~~~~~~~vflGD~vdrG~~s~------e~l~~l~~lk-~~~p~~v~~l 358 (556)
-++++|||.|.-...- .++.+. ..-+-+|++||+++.|..+. +.+.-++... ....--++.+
T Consensus 4 l~f~~igD~g~g~~~q~~va~~m~~~~~~----~~pd~vl~~GD~~y~G~~~~~d~~~~~~f~~~~~~~~~~~~~P~~~v 79 (342)
T 3tgh_A 4 LRFASLGDWGKDTKGQILNAKYFKQFIKN----ERVTFIVSPGSNFIDGVKGLNDPAWKNLYEDVYSEEKGDMYMPFFTV 79 (342)
T ss_dssp EEEEECCSCBSCCHHHHHHHHHHHHHHHH----TTCCEEEECSCSBTTCCCSTTCTHHHHHTTTTSCCGGGTTCSEEEEC
T ss_pred EEEEEEecCCCCCchHHHHHHHHHHHHhh----cCCCEEEECCCcccCCCCcCccHHHHHHHHHHhhhhhhhhCCCEEEe
Confidence 3689999999754322 222322 12356999999998887532 2332222211 1223357999
Q ss_pred ccccccc
Q 008730 359 RGNHESK 365 (556)
Q Consensus 359 rGNHE~~ 365 (556)
.||||..
T Consensus 80 lGNHD~~ 86 (342)
T 3tgh_A 80 LGTRDWT 86 (342)
T ss_dssp CCHHHHT
T ss_pred CCCCccC
Confidence 9999976
No 275
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.12 Score=57.03 Aligned_cols=61 Identities=23% Similarity=0.239 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 74 (556)
...+...+..+..+|+|+-|+++.++|+...|.+-..|+.|+.||..+|+|+.|+-.++.+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456667888889999999999999999999999999999999999999999999776654
No 276
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.39 E-value=0.17 Score=53.04 Aligned_cols=80 Identities=20% Similarity=0.137 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 94 (556)
+.+..+|+...-...++.|..+|.+|+.+.|++...++.+|.+....|+.-+|+-+|.+++......+.+.-++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999998877789999999887765
No 277
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.38 E-value=1.2 Score=46.77 Aligned_cols=113 Identities=11% Similarity=0.065 Sum_probs=91.0
Q ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Q 008730 28 KKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYYRRGAAYLAMGKFKEALKDF 105 (556)
Q Consensus 28 g~~~~Al~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 105 (556)
+..++|.+.|++..+.. .-+...|..+-.+|.+.|+.++|.+.+++..+.. .-+...|..+-..|.+.|+.++|.+.|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 34788999999877654 2367889999999999999999999999988753 225778888999999999999999999
Q ss_pred HHHHHhCC-CCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 106 QQVKKLSP-NDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 106 ~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++..+..- -+...+..+-.++.+.|+ .++|.+++.
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~--~d~A~~ll~ 199 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKN--ADKVYKTLQ 199 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCC--HHHHHHHHH
Confidence 99988642 246777788888888777 677766654
No 278
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.34 E-value=0.23 Score=42.81 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=74.7
Q ss_pred HhCCCCHHHHHHHHHHHHHhhCH------HHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008730 42 ELNSQNAVYYANRAFAHTKLEEY------GSAIQDASKAIEIDPR--------YPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (556)
Q Consensus 42 ~~~p~~~~a~~~lg~~~~~~g~~------~~A~~~~~~al~l~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 107 (556)
-+.|++++.|........+.|+. ++-++.|++|+..-|- +...|.+.|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 35799999999999999888998 8889999999987664 34567777754 567999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHhhhhHHHHhcCCC
Q 008730 108 VKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (556)
Q Consensus 108 al~l~p~~~~~~~~l~~~~~~~~~~~~~~Ai~~~~ 142 (556)
++.+....+.+|...|+...+.++ ..+|..+..
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgn--l~kARkILg 118 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGN--VKKSKQLLQ 118 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence 999977776677666666665555 566655443
No 279
>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}
Probab=93.89 E-value=0.021 Score=60.85 Aligned_cols=67 Identities=24% Similarity=0.323 Sum_probs=43.6
Q ss_pred CcceEeccCCCCHH----------------HHHHHHHhcCCCCCCCCeeeecccccCCCCh----------HHHHHHHHh
Q 008730 293 KHFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFVDRGSFS----------VEVILTLFA 346 (556)
Q Consensus 293 ~~i~vigDiHG~~~----------------~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s----------~e~l~~l~~ 346 (556)
.+|+.++|+||++. .+..+++...-......+|..||.+++++.+ ..++..|-.
T Consensus 20 l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~~~~~~ln~ 99 (527)
T 3qfk_A 20 IAFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRRQYDQSFKIDNGDFLQGSPFCNYLIAHSGSSQPLVDFYNR 99 (527)
T ss_dssp EEEEEECCCTTCCSSCCSSSTTCCCSCSHHHHHHHHHHHHTTSSEEEEEECSCCSSSSHHHHHHHHTTCSSHHHHHHHHH
T ss_pred EEEEEEeccCCCccCcccccCCCcCCCcHHHHHHHHHHHHhcCCCEEEEECCCcCCCcHHHHHHhhcccCcchHHHHHHh
Confidence 35899999999863 5566666554332333456679999987553 355666655
Q ss_pred ccccCCCeEEEecccccc
Q 008730 347 FKCMCPSAIYLSRGNHES 364 (556)
Q Consensus 347 lk~~~p~~v~~lrGNHE~ 364 (556)
+. ++ ++..||||.
T Consensus 100 lg---~D--~~t~GNHef 112 (527)
T 3qfk_A 100 MA---FD--FGTLGNHEF 112 (527)
T ss_dssp TC---CC--EECCCGGGG
T ss_pred cC---Cc--EEecccccc
Confidence 53 22 455899994
No 280
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.92 E-value=0.45 Score=45.22 Aligned_cols=65 Identities=18% Similarity=0.091 Sum_probs=59.4
Q ss_pred HHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008730 57 AHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (556)
Q Consensus 57 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 121 (556)
.+++.|+.++|++.+...++.+|.+......+...++-.|+++.|.+.++.+.+++|+.......
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~ 70 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 70 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999997665433
No 281
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Probab=92.59 E-value=0.031 Score=59.37 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=41.9
Q ss_pred cceEeccCCCCHH----------HHHHHHHhcCCC----CCCCCeeeecccccCCCCh-----HHHHHHHHhccccCCCe
Q 008730 294 HFTVCGDVHGQFY----------DLLNIFELNGLP----SEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSA 354 (556)
Q Consensus 294 ~i~vigDiHG~~~----------~l~~~l~~~~~~----~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~p~~ 354 (556)
+|+.++|+||.+. .+..++++..-. ...+.+|..||+++..+.+ ..++..|-.+. ++
T Consensus 10 ~Il~~~D~H~~~~~~~~~~~G~~~~~~~v~~~r~~~~~~~~~~lvl~~GD~~~g~~~~~~~~~~~~~~~ln~lg---~d- 85 (516)
T 1hp1_A 10 TVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVG---YD- 85 (516)
T ss_dssp EEEEECCCTTCCSCCTTSCCCHHHHHHHHHHHHHHHHHHTCEEEEEECSCCSSSCHHHHTTTTHHHHHHHHHHT---CC-
T ss_pred EEEEecccccCccCCCCCCcCHHHHHHHHHHHHHhhhccCCCEEEEeCCccCCCcchhhhcCCcHHHHHHhccC---CC-
Confidence 5899999999743 355555443211 1234688999999765432 35555555553 22
Q ss_pred EEEecccccc
Q 008730 355 IYLSRGNHES 364 (556)
Q Consensus 355 v~~lrGNHE~ 364 (556)
++..||||.
T Consensus 86 -~~~~GNHEf 94 (516)
T 1hp1_A 86 -AMAIGNHEF 94 (516)
T ss_dssp -EEECCGGGG
T ss_pred -EEeeccccc
Confidence 566899997
No 282
>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*
Probab=92.32 E-value=0.06 Score=57.54 Aligned_cols=66 Identities=21% Similarity=0.181 Sum_probs=43.4
Q ss_pred cceEeccCCCCH--------------------HHHHHHHHhcCCCCCCCCeeeecccccCCCCh-----HHHHHHHHhcc
Q 008730 294 HFTVCGDVHGQF--------------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFK 348 (556)
Q Consensus 294 ~i~vigDiHG~~--------------------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk 348 (556)
+|+.++|+||++ ..+..+++...-......+|+.||.++..+.+ ..++..|-.+.
T Consensus 27 ~Il~~nD~Hg~~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~ln~lg 106 (546)
T 4h2g_A 27 TILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALR 106 (546)
T ss_dssp EEEEECCCTTCCSCBCTTSSBCSSGGGCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHHHT
T ss_pred EEEEecccccCCcccccccccccccccccCCHHHHHHHHHHHHhhCCCEEEEECCccCCCchhhhhhCChHHHHHHHhcC
Confidence 489999999864 44556665543222234688899999987543 44555655554
Q ss_pred ccCCCeEEEecccccc
Q 008730 349 CMCPSAIYLSRGNHES 364 (556)
Q Consensus 349 ~~~p~~v~~lrGNHE~ 364 (556)
++ ++..||||.
T Consensus 107 ---~d--~~~~GNHEf 117 (546)
T 4h2g_A 107 ---YD--AMALGNHEF 117 (546)
T ss_dssp ---CS--EEECCGGGG
T ss_pred ---Cc--EEeccCccc
Confidence 22 456899995
No 283
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.22 E-value=0.5 Score=47.99 Aligned_cols=62 Identities=10% Similarity=-0.046 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (556)
.+...++..+...|++++|+..+++++..+|-+-.+|..+-.+++..|+..+|++.|+++-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556778889999999999999999999999999999999999999999999999988754
No 284
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.76 E-value=1.3 Score=44.77 Aligned_cols=94 Identities=15% Similarity=-0.005 Sum_probs=75.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---CCC----hHHH
Q 008730 19 ALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEID---PRY----PKGY 85 (556)
Q Consensus 19 ~lg~~~~~~g~~~~Al~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~----~~~~ 85 (556)
.+|..|+..|+|.+|++.+.+.++.-.. -.+.+......|..++++.++...+.+|.... +.+ ....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 7899999999999999999998875322 13556677888999999999999999997553 122 3456
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhC
Q 008730 86 YRRGAAYL-AMGKFKEALKDFQQVKKLS 112 (556)
Q Consensus 86 ~~lg~~~~-~~g~~~~A~~~~~~al~l~ 112 (556)
..-|..+. ..++|++|..+|-.+++-.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 66788888 8999999999999997643
No 285
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=91.69 E-value=0.1 Score=55.91 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=43.1
Q ss_pred cceEeccCCCCH-----------------HHHHHHHHhcCCCCCCCCeeeecccccCCCCh-----HHHHHHHHhccccC
Q 008730 294 HFTVCGDVHGQF-----------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMC 351 (556)
Q Consensus 294 ~i~vigDiHG~~-----------------~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~ 351 (556)
+|+.++|+||++ ..+..++++..-...+..++..||++++.+.+ ..++..+-.+.
T Consensus 31 ~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~ln~lg--- 107 (552)
T 2z1a_A 31 TLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARAKNPLFLDAGDVFQGTLYFNQYRGLADRYFMHRLR--- 107 (552)
T ss_dssp EEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHHTT---
T ss_pred EEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCcHHHHHhCCcHHHHHHHhcC---
Confidence 589999999863 45666665543222233578899999986542 35555555553
Q ss_pred CCeEEEeccccccc
Q 008730 352 PSAIYLSRGNHESK 365 (556)
Q Consensus 352 p~~v~~lrGNHE~~ 365 (556)
++ ++..||||..
T Consensus 108 ~d--~~~lGNHEfd 119 (552)
T 2z1a_A 108 YR--AMALGNHEFD 119 (552)
T ss_dssp CC--EEECCGGGGT
T ss_pred CC--cccccccccc
Confidence 22 5568999964
No 286
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.06 E-value=1.7 Score=44.70 Aligned_cols=100 Identities=11% Similarity=-0.086 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--CCCh----HHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEID--PRYP----KGY 85 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~----~~~ 85 (556)
.++..+|..+++.|++++|++.|.++...... -.+.+.....++...+++..+...+.++-.+- ..++ ...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 45678999999999999999999998876433 35778888888999999999999999997652 2232 344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 114 (556)
...|.++...++|.+|...|..++.....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 55677788899999999999988776543
No 287
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.03 E-value=1.6 Score=48.19 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=36.1
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (556)
Q Consensus 22 ~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 74 (556)
..+...|++++|.+..+.. ++...|..+|..+.+.++++.|+.+|.++
T Consensus 660 ~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456778888888776642 56778888888888888888888888775
No 288
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*
Probab=90.08 E-value=0.15 Score=54.79 Aligned_cols=66 Identities=17% Similarity=0.055 Sum_probs=41.4
Q ss_pred cceEeccCCCCHH---------------------HHHHHHHhcCCCCCCCCeeeecccccCCC-----ChHHHHHHHHhc
Q 008730 294 HFTVCGDVHGQFY---------------------DLLNIFELNGLPSEENPYLFNGDFVDRGS-----FSVEVILTLFAF 347 (556)
Q Consensus 294 ~i~vigDiHG~~~---------------------~l~~~l~~~~~~~~~~~~vflGD~vdrG~-----~s~e~l~~l~~l 347 (556)
+|+.++|+||++. .+..+++...-...+..+|..||.++..+ ....++..|-.+
T Consensus 14 ~Il~tnD~Hg~~~~~~~~~~~~~~~~~~~~gG~arla~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~l 93 (579)
T 3ztv_A 14 SILHINDHHSYLEPHETRINLNGQQTKVDIGGFSAVNAKLNKLRKKYKNPLVLHAGDAITGTLYFTLFGGSADAAVMNAG 93 (579)
T ss_dssp EEEEECCCTTCCSCEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSCSSHHHHTTTTHHHHHHHHHH
T ss_pred EEEEeCccccCccCCccccccCCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCceeeeecCCHHHHHHHHhc
Confidence 4899999999853 34555554432222335788899998663 234455555555
Q ss_pred cccCCCeEEEecccccc
Q 008730 348 KCMCPSAIYLSRGNHES 364 (556)
Q Consensus 348 k~~~p~~v~~lrGNHE~ 364 (556)
. ++ ++..||||.
T Consensus 94 g---~D--~~tlGNHEf 105 (579)
T 3ztv_A 94 N---FH--YFTLGNHEF 105 (579)
T ss_dssp T---CS--EEECCSGGG
T ss_pred C---cC--eeecccccc
Confidence 4 22 355799995
No 289
>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=89.96 E-value=0.11 Score=50.02 Aligned_cols=70 Identities=19% Similarity=0.120 Sum_probs=44.1
Q ss_pred CCcceEeccCCCCHH--HHHHHHHhcCCCCCCCCeeeecccccCC-CChHHHHHHHHhccccCCCeEEEecccccccc
Q 008730 292 GKHFTVCGDVHGQFY--DLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 292 ~~~i~vigDiHG~~~--~l~~~l~~~~~~~~~~~~vflGD~vdrG-~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 366 (556)
.++|..+|||||... .+...+.+..-....+.++..||-.--| +.+..+...|..+.. .+.. .||||.-.
T Consensus 4 ~m~ilf~GDv~G~~G~~~l~~~l~~lr~~~~~d~vi~Ngen~~gG~g~~~~~~~~ln~~G~----Da~T-lGNHefD~ 76 (281)
T 1t71_A 4 SIKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGV----NYIT-MGNHTWFQ 76 (281)
T ss_dssp CCEEEEECEEBHHHHHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCHHHHHHHHHHTC----CEEE-CCTTTTCC
T ss_pred eEEEEEECCcCChHHHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCcCHHHHHHHHhcCC----CEEE-EccCcccC
Confidence 357999999999752 2333344332111124577888877555 557788888877763 3344 59999754
No 290
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=88.99 E-value=6.3 Score=44.67 Aligned_cols=100 Identities=8% Similarity=-0.009 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGY 85 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 85 (556)
..-..+..+-..+.+.|+.++|.+.|.+.-+. -.-+...|+.+-..|.+.|+.++|.+.|++-.+. .| +...|
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTY 203 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHH
Confidence 33456888999999999999999999764432 2446889999999999999999999999998775 34 57788
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 008730 86 YRRGAAYLAMGK-FKEALKDFQQVKKLS 112 (556)
Q Consensus 86 ~~lg~~~~~~g~-~~~A~~~~~~al~l~ 112 (556)
..+-.++.+.|+ .++|.+.|++..+..
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 888889999998 578999999998875
No 291
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.63 E-value=7 Score=40.21 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHH---hCCCC-
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL-NSQ-----NAVYYANRAFAHTKLEEYGSAIQDASKAIE---IDPRY- 81 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~- 81 (556)
..++....++..+...|++.+|...+.....- ... -.+.+......+...+++..|...++++.. -.+..
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 46777889999999999999999998887642 111 145677778889999999999999999742 23333
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 82 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 111 (556)
...+...|..+...++|.+|-.+|..++..
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 346777899999999999999999999875
No 292
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=88.52 E-value=12 Score=32.78 Aligned_cols=69 Identities=10% Similarity=-0.062 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------CCCCHHH-HHHHHHHHHHhhCHHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL-----------------NSQNAVY-YANRAFAHTKLEEYGSAIQDASK 73 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~-----------------~p~~~~a-~~~lg~~~~~~g~~~~A~~~~~~ 73 (556)
+++.+.+-.+.++.+.++|.+|+..+++.++- +|.+.+. +..+|....+.|+.++|+.++..
T Consensus 60 NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 60 NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 45677788899999999999999999999932 3455554 45568999999999999999999
Q ss_pred HHHhCCC
Q 008730 74 AIEIDPR 80 (556)
Q Consensus 74 al~l~p~ 80 (556)
....+|-
T Consensus 140 Sf~~~~l 146 (242)
T 3kae_A 140 SFGKSFL 146 (242)
T ss_dssp HHHHCCC
T ss_pred hcCCccc
Confidence 9887764
No 293
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.87 E-value=1.9 Score=47.69 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=67.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 008730 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK 97 (556)
Q Consensus 18 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 97 (556)
......+.+.|.+++|++..+ ++...+. .....|++++|.+.++ ..++...|-.+|..+.+.++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~---~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKFE---LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHHH---HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhee---hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC
Confidence 455566677788888876553 3333333 3467899999998764 34678899999999999999
Q ss_pred HHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHhh
Q 008730 98 FKEALKDFQQVK--------KLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 98 ~~~A~~~~~~al--------~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
++.|+.+|.++- ....++.+....++......++
T Consensus 697 ~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 697 FKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 999999999862 2235566665566555444433
No 294
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=87.49 E-value=4.6 Score=35.74 Aligned_cols=47 Identities=9% Similarity=-0.040 Sum_probs=40.9
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 008730 23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (556)
Q Consensus 23 ~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 74 (556)
.....|+++.|.+..++. ++...|..+|......|+++-|..+|+++
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 447889999999887764 67889999999999999999999999886
No 295
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*
Probab=87.33 E-value=0.22 Score=52.64 Aligned_cols=65 Identities=15% Similarity=0.302 Sum_probs=37.9
Q ss_pred cceEeccCCCCH------------------HHHHHHHHhcCCCCCCCCeee-ecccccCCCC-----hHHHHHHHHhccc
Q 008730 294 HFTVCGDVHGQF------------------YDLLNIFELNGLPSEENPYLF-NGDFVDRGSF-----SVEVILTLFAFKC 349 (556)
Q Consensus 294 ~i~vigDiHG~~------------------~~l~~~l~~~~~~~~~~~~vf-lGD~vdrG~~-----s~e~l~~l~~lk~ 349 (556)
+|+.++|+||++ ..+..+++...-... +.+++ .||.++..+. ...++..|-.+.
T Consensus 8 ~Il~tnD~Hg~~~~~~~~~~~~~~~~~gG~a~la~~i~~~r~~~~-~~llldaGD~~~g~~~~~~~~g~~~~~~ln~lg- 85 (509)
T 3ive_A 8 TIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQEKAKNK-ATWFFDAGDYFTGPYISSLTKGKAIIDIMNTMP- 85 (509)
T ss_dssp EEEEECCCTTCCSCBCCTTSGGGTSCBCCHHHHHHHHHHHHHHCS-SEEEEECSCCSSSSHHHHTTTTHHHHHHHTTSC-
T ss_pred EEEEEccccCCccCcccccccCCCcCcCCHHHHHHHHHHHHhcCC-CeEEEECCCCCCCchhhhhcCChHHHHHHHhcC-
Confidence 489999999874 345555554432222 33444 8999984322 234555554443
Q ss_pred cCCCeEEEecccccc
Q 008730 350 MCPSAIYLSRGNHES 364 (556)
Q Consensus 350 ~~p~~v~~lrGNHE~ 364 (556)
++ ++..||||.
T Consensus 86 --~D--~~tlGNHEf 96 (509)
T 3ive_A 86 --FD--AVTIGNHEF 96 (509)
T ss_dssp --CS--EECCCGGGG
T ss_pred --Cc--EEeeccccc
Confidence 22 445799994
No 296
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=86.83 E-value=0.3 Score=48.66 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=39.7
Q ss_pred cceEeccCCCCHH----------------HHHHHHHhcCCCCCCCCeeeecccccCCCChH-------------HHHHHH
Q 008730 294 HFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-------------EVILTL 344 (556)
Q Consensus 294 ~i~vigDiHG~~~----------------~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~-------------e~l~~l 344 (556)
+|+-+.|+||++. .+..++++..-...+..+|..||.+...+.+. .++..+
T Consensus 10 ~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~n~llld~GD~~qGs~~~~~~~~~~~~~g~~~p~~~~m 89 (339)
T 3jyf_A 10 RIMETTDLHSNMMDFDYYKDAATEKFGLVRTASLIEQARAEVKNSVLVDNGDVIQGSPLGDYMAAKGLKEGDVHPVYKAM 89 (339)
T ss_dssp EEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHTCSCEEEEECSCCSSSSHHHHHHHHHCCCTTCCCHHHHHH
T ss_pred EEEEEeeCCCCcccccccCCCccccCCHHHHHHHHHHHHhhCCCEEEEECCCCCCCchhHHhhhhcccccccchHHHHHH
Confidence 3899999999863 34445554432223345788999997544321 345555
Q ss_pred HhccccCCCeEEEeccccccc
Q 008730 345 FAFKCMCPSAIYLSRGNHESK 365 (556)
Q Consensus 345 ~~lk~~~p~~v~~lrGNHE~~ 365 (556)
-.+. . .+ +..||||.-
T Consensus 90 n~lg---~-D~-~t~GNHEfd 105 (339)
T 3jyf_A 90 NTLN---Y-AV-GNLGNHEFN 105 (339)
T ss_dssp TTSC---C-SE-EECCGGGGT
T ss_pred HhcC---C-CE-Eecchhhhh
Confidence 4443 2 23 346999953
No 297
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=86.49 E-value=0.37 Score=47.99 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=39.7
Q ss_pred cceEeccCCCCHH----------------HHHHHHHhcCCCCCCCCeeeecccccCCCChH-----------------HH
Q 008730 294 HFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-----------------EV 340 (556)
Q Consensus 294 ~i~vigDiHG~~~----------------~l~~~l~~~~~~~~~~~~vflGD~vdrG~~s~-----------------e~ 340 (556)
+|+-+.|+||++. .+..+++...-...+..+|..||.+...+.+. .+
T Consensus 13 ~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~~~llld~GD~~qGs~~~~~~~~~~~~~g~~~g~~~~~ 92 (341)
T 3gve_A 13 SILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGNPLGEYAVKYQKDDIISGTKTHPI 92 (341)
T ss_dssp EEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSSHHHHHHHHHHHHHHHHTSSCCHH
T ss_pred EEEEEeccCCCccCccccCCCccccCCHHHHHHHHHHHHhcCCCEEEEecCccCCCcHHHHHhhhcccccccccccccHH
Confidence 3899999999863 34445544332222334677899997654321 24
Q ss_pred HHHHHhccccCCCeEEEeccccccc
Q 008730 341 ILTLFAFKCMCPSAIYLSRGNHESK 365 (556)
Q Consensus 341 l~~l~~lk~~~p~~v~~lrGNHE~~ 365 (556)
+..+-.+.. + + +..||||.-
T Consensus 93 ~~~ln~lg~---D-a-~tlGNHEfd 112 (341)
T 3gve_A 93 ISVMNALKY---D-A-GTLGNHEFN 112 (341)
T ss_dssp HHHHHHTTC---C-B-EECCGGGGT
T ss_pred HHHHHhhCC---C-e-eeccchhhc
Confidence 555555542 2 2 347999964
No 298
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.12 E-value=9.4 Score=38.51 Aligned_cols=99 Identities=10% Similarity=0.057 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------CCCHH------------------HH--
Q 008730 14 AEELKALANEAFRAKKYSQAIDLYSQAIELN----------------------SQNAV------------------YY-- 51 (556)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~----------------------p~~~~------------------a~-- 51 (556)
-.+...+|..|.+.|++++-.+.+......- |+... .|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999998776665543221 22211 12
Q ss_pred ----HHHHHHHHHhhCHHHHHHHHHHHHHh----CCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008730 52 ----ANRAFAHTKLEEYGSAIQDASKAIEI----DPR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (556)
Q Consensus 52 ----~~lg~~~~~~g~~~~A~~~~~~al~l----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 112 (556)
..+|..|+..|+|.+|+..+.+..+- |.. -.+.+..-..+|..++++.++...|.+|....
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 26799999999999999999888763 211 25677888889999999999999999997764
No 299
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A
Probab=84.43 E-value=0.26 Score=52.69 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=24.5
Q ss_pred CeeeecccccCCCCh-----HHHHHHHHhccccCCCeEEEecccccc
Q 008730 323 PYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHES 364 (556)
Q Consensus 323 ~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~p~~v~~lrGNHE~ 364 (556)
.+|..||++++.+.+ ..++.++-.+. + + + +. ||||.
T Consensus 126 Lll~~GD~~~gs~~~~~~~g~~~~~~ln~lg--~-d-~-~~-GNHEf 166 (562)
T 2wdc_A 126 LVLDGGDTWTNSGLSLLTRGEAVVRWQNLVG--V-D-H-MV-SHWEW 166 (562)
T ss_dssp EEEECSCCSSSSHHHHHHTTHHHHHHHHHHT--C-C-E-EC-CSGGG
T ss_pred EEEeCCCCCCcchhhhhhCCHHHHHHHHhhC--C-c-E-Ee-cchhc
Confidence 588999999976543 35566665554 3 2 3 46 99995
No 300
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2
Probab=84.30 E-value=0.4 Score=51.19 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=40.3
Q ss_pred CcceEeccCCCCHH----------------HHHHHHHhcC-CCCCCCCeeeecccccCCC-------ChHHHHHHHHhcc
Q 008730 293 KHFTVCGDVHGQFY----------------DLLNIFELNG-LPSEENPYLFNGDFVDRGS-------FSVEVILTLFAFK 348 (556)
Q Consensus 293 ~~i~vigDiHG~~~----------------~l~~~l~~~~-~~~~~~~~vflGD~vdrG~-------~s~e~l~~l~~lk 348 (556)
.+|+.++|+||++. .+...++... -...+..+|..||.++..+ ....++..|-.+.
T Consensus 16 l~ILhtnD~Hg~~~~~~~~~~~~~~~Gg~a~l~~~i~~~~~~~~~~~LlldaGD~~~Gs~~~~~~~~~g~~~~~~ln~lg 95 (557)
T 3c9f_A 16 INFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLLIDSGDRHDGNGLSDITSPNGLKSTPIFIKQD 95 (557)
T ss_dssp EEEEEECCCTTCTTCCSSCGGGCCCHHHHHHHHHHHHHHHHHTTCEEEEEECSCCCSSCHHHHSSSSTTTTTHHHHTTSC
T ss_pred EEEEEEcccccCccCcccccccccccchHHHHHHHHHHHHHhcCCCEEEEecCCCCCCccchhhcccCCHHHHHHHHhcC
Confidence 45899999999742 3333444311 0111224789999997644 2224555555554
Q ss_pred ccCCCeEEEecccccccc
Q 008730 349 CMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 349 ~~~p~~v~~lrGNHE~~~ 366 (556)
.+ ++..||||.-.
T Consensus 96 ---~D--a~tlGNHEfD~ 108 (557)
T 3c9f_A 96 ---YD--LLTIGNHELYL 108 (557)
T ss_dssp ---CS--EECCCGGGSSS
T ss_pred ---CC--EEeecchhccc
Confidence 22 44579999753
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.73 E-value=1 Score=47.08 Aligned_cols=102 Identities=12% Similarity=0.033 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHH----------HHHHHHHh-----CCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAID----------LYSQAIEL-----NSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~----------~~~~al~~-----~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (556)
.+..|+..+..+-..|+..+... .+-.+++. |+. .+..++.+-..|...+.|+.|.....++.
T Consensus 180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~- 258 (523)
T 4b4t_S 180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE- 258 (523)
T ss_dssp -----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-
Confidence 34556655565656665554321 22222222 222 25567778889999999999999999985
Q ss_pred hCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730 77 IDPRY-------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (556)
Q Consensus 77 l~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 116 (556)
.|.. ...+|.+|.++.-.++|.+|.+++..|++..|.+.
T Consensus 259 -fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 259 -YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp -SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred -CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 4432 56788899999999999999999999999988654
No 302
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=80.42 E-value=9.6 Score=33.69 Aligned_cols=83 Identities=13% Similarity=0.022 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
....|..+|...+..|+++-|..+|+++-. +..+...|.-.|+.+.-....+.+.... + +.....++
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla~iA~~~g-~----~n~af~~~ 99 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQNIAQTRE-D----FGSMLLNT 99 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHHHHTT-C----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHHHHHHHCc-c----HHHHHHHH
Confidence 456799999999999999999999998533 2345566667777665544444443333 2 12234567
Q ss_pred HHcCCHHHHHHHHHHH
Q 008730 93 LAMGKFKEALKDFQQV 108 (556)
Q Consensus 93 ~~~g~~~~A~~~~~~a 108 (556)
..+|+++++++.|.+.
T Consensus 100 l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 100 FYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHC
Confidence 7899999999888655
No 303
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.42 E-value=6.2 Score=45.92 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=70.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---------------------
Q 008730 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--------------------- 77 (556)
Q Consensus 19 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------------------- 77 (556)
.+...+...+.++-|.+ .+...|.++...+.+|.++...|++++|.++|++|..-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34455666777765543 44567888888899999999999999999999887311
Q ss_pred --CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730 78 --DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115 (556)
Q Consensus 78 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 115 (556)
....+..|+.....+.+.+.++.+++.-+.|++..+.+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~ 932 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD 932 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC
Confidence 11124567777788889999999999999999987543
No 304
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=78.36 E-value=4.6 Score=30.90 Aligned_cols=39 Identities=23% Similarity=0.166 Sum_probs=28.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008730 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (556)
Q Consensus 5 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~ 43 (556)
.++....+.+..+...|...-+.|+|++|+.+|.++++.
T Consensus 10 ~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 10 SAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 333444566777788888888888888888888877764
No 305
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.10 E-value=4.2 Score=47.39 Aligned_cols=93 Identities=14% Similarity=0.031 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHhhCHHHHHHHHH
Q 008730 16 ELKALANEAFRAKKYSQAIDLYSQAIEL-----------------------NSQNAVYYANRAFAHTKLEEYGSAIQDAS 72 (556)
Q Consensus 16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~-----------------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 72 (556)
..+-+|.+++..|++++|..+|++|-.- ....+..|......+.+.+.++.+++..+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4588999999999999999999887421 01123456667778888899999999999
Q ss_pred HHHHhCCCC-h----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008730 73 KAIEIDPRY-P----KGYYRRGAAYLAMGKFKEALKDFQQV 108 (556)
Q Consensus 73 ~al~l~p~~-~----~~~~~lg~~~~~~g~~~~A~~~~~~a 108 (556)
.|++..+.+ . ..|.++-..+..+++|++|...+...
T Consensus 924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 999876543 2 25777888899999999998877544
No 306
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=75.08 E-value=2.3 Score=40.05 Aligned_cols=67 Identities=15% Similarity=0.008 Sum_probs=43.5
Q ss_pred CcceEeccCCCCH--HHHHHHHHhcCCCCCCCCeeeecccc-cCCCChHHHHHHHHhccccCCCeEEEecccccccc
Q 008730 293 KHFTVCGDVHGQF--YDLLNIFELNGLPSEENPYLFNGDFV-DRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 366 (556)
Q Consensus 293 ~~i~vigDiHG~~--~~l~~~l~~~~~~~~~~~~vflGD~v-drG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 366 (556)
+||..||||=|.- ..+...+....... +.+|+.|+-. ..-..+.+....|..+.. .+. -.||||.-.
T Consensus 1 m~ilfiGDi~g~~G~~~v~~~l~~lr~~~--d~vi~ngen~~~G~g~~~~~~~~l~~~G~----D~~-T~GNHefD~ 70 (252)
T 2z06_A 1 MRVLFIGDVMAEPGLRAVGLHLPDIRDRY--DLVIANGENAARGKGLDRRSYRLLREAGV----DLV-SLGNHAWDH 70 (252)
T ss_dssp CEEEEECCBCHHHHHHHHHHHHHHHGGGC--SEEEEECTTTTTTSSCCHHHHHHHHHHTC----CEE-ECCTTTTSC
T ss_pred CEEEEEEecCCcccHHHHHHHHHHHHhhC--CEEEEeCCCccCCCCcCHHHHHHHHhCCC----CEE-EeccEeeEC
Confidence 4689999997654 45666777665433 4455555444 433467788888877763 444 459999764
No 307
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9
Probab=74.78 E-value=2.9 Score=39.54 Aligned_cols=66 Identities=18% Similarity=0.093 Sum_probs=44.9
Q ss_pred CcceEeccCCCCH--HHHHHHHHhcCCCCCCCCeeeecccccCC-CChHHHHHHHHhccccCCCeEEEeccccccc
Q 008730 293 KHFTVCGDVHGQF--YDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESK 365 (556)
Q Consensus 293 ~~i~vigDiHG~~--~~l~~~l~~~~~~~~~~~~vflGD~vdrG-~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 365 (556)
+||..+|||=|.. ..+...+.+..... +.+|+.|+-.--| +.+.+....|..+.. .+.. .||||.-
T Consensus 1 m~ilf~GDv~g~~G~~~~~~~l~~lr~~~--d~vi~nge~~~~G~g~~~~~~~~l~~~G~----Da~T-lGNHefD 69 (255)
T 1t70_A 1 MRVLFIGDVFGQPGRRVLQNHLPTIRPQF--DFVIVNMENSAGGFGMHRDAARGALEAGA----GCLT-LGNHAWH 69 (255)
T ss_dssp CEEEEECCBBHHHHHHHHHHHHHHHGGGC--SEEEEECTBTTTTSSCCHHHHHHHHHHTC----SEEE-CCTTTTS
T ss_pred CEEEEEeccCChHHHHHHHHHHHHHHhhC--CEEEECCCCccCCcCCCHHHHHHHHhCCC----CEEE-ecccccc
Confidence 4689999997765 45566666654332 5577777776555 567778888877753 3444 5999986
No 308
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=74.42 E-value=66 Score=31.63 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Q 008730 47 NAVYYANRAFAHTKL--EEYGSAIQDASKAIEI-----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SP 113 (556)
Q Consensus 47 ~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~l-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p 113 (556)
.+.++-+||.+--.. .....++..|.+|+.. +......|..+|-.+++.+++.+|++.|..|-.. ..
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~r 333 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSK 333 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCG
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 455555665543221 1223367777777654 3456888999999999999999999999988775 34
Q ss_pred CCHHHHHHHHHHHHH
Q 008730 114 NDPDAAQKVKECEKA 128 (556)
Q Consensus 114 ~~~~~~~~l~~~~~~ 128 (556)
++.+.+..+-.+...
T Consensus 334 eDeEIYKEf~eIAne 348 (472)
T 3re2_A 334 DDEEMYKEFHEIAND 348 (472)
T ss_dssp GGHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHH
Confidence 556777666655433
No 309
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=71.75 E-value=2.5 Score=44.68 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=39.3
Q ss_pred ceEeccCCCCHH--------------------HHHHHHHhcCCCCCCCCeeeecccccCCCC-----hHHHHHHHHhccc
Q 008730 295 FTVCGDVHGQFY--------------------DLLNIFELNGLPSEENPYLFNGDFVDRGSF-----SVEVILTLFAFKC 349 (556)
Q Consensus 295 i~vigDiHG~~~--------------------~l~~~l~~~~~~~~~~~~vflGD~vdrG~~-----s~e~l~~l~~lk~ 349 (556)
|+-+.|+||++. .+..++++..-..++..+|..||.+...+. ...++.++-.+..
T Consensus 6 ILhtnD~Hg~l~~~~~~~~~~~~~~~~~GG~arlat~i~~~r~~~~n~llldaGD~~qGs~~~~~~~g~~~i~~mN~lgy 85 (530)
T 4h1s_A 6 ILHTNDVHSRLEQTSEDSSKCVNASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRY 85 (530)
T ss_dssp EEEECCCTTCCSCBCTTSSBCCSTTSCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSSHHHHHHTTHHHHHHHHHTTC
T ss_pred EEEEcccccCCcccCcccccccccccccCcHHHHHHHHHHHHhhCcCeEEEEeCCcccchHHHHHhCChHHHHHHhccCC
Confidence 788899998753 344445443322223457778999986543 2345555555542
Q ss_pred cCCCeEEEecccccc
Q 008730 350 MCPSAIYLSRGNHES 364 (556)
Q Consensus 350 ~~p~~v~~lrGNHE~ 364 (556)
. .+..||||.
T Consensus 86 ----D-a~~lGNHEF 95 (530)
T 4h1s_A 86 ----D-AMALGNHEF 95 (530)
T ss_dssp ----C-EEECCGGGG
T ss_pred ----C-EEEEchhhh
Confidence 2 345799996
No 310
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.55 E-value=6.5 Score=40.19 Aligned_cols=65 Identities=8% Similarity=-0.036 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 47 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 111 (556)
-..++..+|..|.+.|++++|.+.|.++...... -.+.++....++...+++..|...+.++..+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3457889999999999999999999998875433 3678888899999999999999999999776
No 311
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis}
Probab=70.59 E-value=7 Score=41.18 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=24.7
Q ss_pred CcceEeccCC---CCHHHHHHHHHhcCCCCCCCCeeeecccc
Q 008730 293 KHFTVCGDVH---GQFYDLLNIFELNGLPSEENPYLFNGDFV 331 (556)
Q Consensus 293 ~~i~vigDiH---G~~~~l~~~l~~~~~~~~~~~~vflGD~v 331 (556)
.++.++||.| |.+..+..+.+ . .-+-+|++||+|
T Consensus 117 ~rfa~~sc~~~~~g~~~~~~~ia~----~-~~D~vlhlGD~i 153 (527)
T 2yeq_A 117 MTFAFASCQQYEHGYYTAYKHMAK----E-KLDLVFHLGDYI 153 (527)
T ss_dssp EEEEEECCCCGGGCCCHHHHHHTT----S-CCSEEEECSCSS
T ss_pred eEEEEEecCCCCCCccHHHHHHHh----c-CCCEEEecCCcc
Confidence 4689999987 55666655543 1 345799999999
No 312
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=69.14 E-value=9 Score=41.19 Aligned_cols=53 Identities=11% Similarity=-0.028 Sum_probs=33.1
Q ss_pred HHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008730 58 HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (556)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 110 (556)
.++.|+++.|..++++.-..........|-+|.++..+|+.++|...|+++..
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34557777777766554433233456667777777777777777777776653
No 313
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.02 E-value=32 Score=38.96 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=71.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---------------------C
Q 008730 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---------------------D 78 (556)
Q Consensus 20 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---------------------~ 78 (556)
+...+...|.++-|. +.+..-|.++..-+.+|.+|...|++++|..+|++|-.- .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 556667777776543 456677888888899999999999999999999987521 1
Q ss_pred CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Q 008730 79 PR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-PNDPD 117 (556)
Q Consensus 79 p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~ 117 (556)
+. ....|.....++...+-++-++...+.|++.. ++++.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 11 12367777888889999999999999999864 44544
No 314
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=66.62 E-value=11 Score=29.20 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=23.0
Q ss_pred CChhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008730 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAI 41 (556)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al 41 (556)
...+.|..+-.++..+.+.|.|++||++.++|.
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 344556667777777788888888877766654
No 315
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=66.39 E-value=50 Score=32.29 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQ 39 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~ 39 (556)
+.+..++..|.++++|++|++.+..
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 4455667777777777777775443
No 316
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.35 E-value=43 Score=34.89 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 81 (556)
..+..+..+-..|...+.|++|.....++. .|.. ...++.+|.++.-.++|.+|.+++..|++..|.+
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 446677888899999999999999999885 4432 4567788999999999999999999999988764
No 317
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=64.76 E-value=32 Score=26.07 Aligned_cols=32 Identities=34% Similarity=0.390 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~ 43 (556)
+.+..+...|...-+.|+|++|+.+|.++++.
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666777788888888888888887777763
No 318
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=64.76 E-value=46 Score=32.19 Aligned_cols=26 Identities=23% Similarity=0.051 Sum_probs=16.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 008730 81 YPKGYYRRGAAYLAMGKFKEALKDFQ 106 (556)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~~A~~~~~ 106 (556)
++..+..+|..|.+.+++.+|..+|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 45666666666666666666666663
No 319
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=64.49 E-value=20 Score=26.50 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 123 (556)
..+|..+...|++++|..+|-+|+...|.-......+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q 58 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 58 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45677777788888888888888888777666554443
No 320
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=63.44 E-value=10 Score=29.13 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~ 43 (556)
...+..+...|...-..|+|++|+.+|.++++.
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566777777778888888888887777754
No 321
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=63.20 E-value=29 Score=29.38 Aligned_cols=80 Identities=9% Similarity=-0.015 Sum_probs=49.3
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 008730 28 KKYSQAIDLYSQAIELNSQNAVYYANRAF-AHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (556)
Q Consensus 28 g~~~~Al~~~~~al~~~p~~~~a~~~lg~-~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 106 (556)
|+...-+.+|-+. +-. .+ +..+|. .+..+|+-++-.+.+...+.-++-+++.++.+|.+|.+.|+..+|-+.+.
T Consensus 75 ~NlKrVi~C~~~~---n~~-se-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 75 QNLKSVVECGVIN---NTL-NE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp SCTHHHHHHHHHT---TCC-CH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcHHHHHHHHHHh---cch-HH-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 4555555555442 111 11 334443 34456666666566666556666678888888888888888888888888
Q ss_pred HHHHhC
Q 008730 107 QVKKLS 112 (556)
Q Consensus 107 ~al~l~ 112 (556)
+|-+..
T Consensus 150 ~AC~kG 155 (172)
T 1wy6_A 150 EACKKG 155 (172)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 887653
No 322
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=59.32 E-value=22 Score=26.30 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=21.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 008730 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVY 50 (556)
Q Consensus 19 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a 50 (556)
.+|..+...|++++|+.+|-+|+...|.-...
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 46667777777777777777777776664443
No 323
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=56.03 E-value=40 Score=28.52 Aligned_cols=111 Identities=6% Similarity=0.001 Sum_probs=69.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHh---------hCHHHHHHHHHHHHHh
Q 008730 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY-----------ANRAFAHTKL---------EEYGSAIQDASKAIEI 77 (556)
Q Consensus 18 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~-----------~~lg~~~~~~---------g~~~~A~~~~~~al~l 77 (556)
...|....-.|..++..+...+...-.+-.-.-| ..+-.++-.. |+...-+.+|-+.
T Consensus 11 LmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~--- 87 (172)
T 1wy6_A 11 LMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN--- 87 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT---
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh---
Confidence 3456677788999999999888887665432111 1123333333 3455666666432
Q ss_pred CCCChHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 008730 78 DPRYPKGYYRRGA-AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133 (556)
Q Consensus 78 ~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~ 133 (556)
+-.+ -++.+|. ++..+|+-++-.+.+...+.-.+-+++.+..++.+|.++|..+
T Consensus 88 n~~s--e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r 142 (172)
T 1wy6_A 88 NTLN--EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDER 142 (172)
T ss_dssp TCCC--HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHH
T ss_pred cchH--HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchh
Confidence 2222 2344544 5667788877777777766667777899999999999888753
No 324
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=55.94 E-value=1.7e+02 Score=29.35 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=45.8
Q ss_pred HHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH
Q 008730 67 AIQDASKAIEI-----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SPNDPDAAQKVKECEK 127 (556)
Q Consensus 67 A~~~~~~al~l-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~l~~~~~ 127 (556)
++..|.+|+.. .......|..+|-.+++.+++.+|+..|..|-.. ..++.+.+..+-.+..
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAn 369 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVAN 369 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 56666666643 3456888999999999999999999999988775 3456777776665543
No 325
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=53.94 E-value=26 Score=31.62 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA 48 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~ 48 (556)
..+.+...+.+|..++..++|.+|.+.+.+|++..|...
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 445567778888888888888888888888888877654
No 326
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=53.82 E-value=21 Score=27.10 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=25.8
Q ss_pred ChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008730 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (556)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~ 43 (556)
....+..+...|...-..|+|++|+.+|.++++.
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3556777778888888888888888888877763
No 327
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=53.61 E-value=25 Score=37.99 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 008730 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFK 99 (556)
Q Consensus 47 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 99 (556)
-.......|...+..|+|.-|.+....++..+|++.++...++.+|.++|.-.
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 34555667777778888888888888888888888888888888888887543
No 328
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=53.24 E-value=26 Score=27.19 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~ 43 (556)
.+.+..+...|...-..|+|++|+.+|.++++.
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445666777777777778888877777766653
No 329
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=52.11 E-value=83 Score=33.64 Aligned_cols=115 Identities=9% Similarity=-0.099 Sum_probs=73.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 008730 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY----ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (556)
Q Consensus 17 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~----~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 92 (556)
....+...+...+.+.|...+.+..+..+-+...+ ..+|.-+...+...++...+.++.....++...-...+. .
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~-A 295 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-A 295 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHH-H
Confidence 44456666777799999999988765444333222 222222233343567888888876655444434444444 4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 93 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
.+.|+++.|..++++.-.-......+.+.++++...+|+.
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~ 335 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGRE 335 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCH
T ss_pred HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCH
Confidence 5679999999999876543345577889999988887774
No 330
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=51.26 E-value=1.1e+02 Score=34.79 Aligned_cols=80 Identities=14% Similarity=-0.036 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 008730 50 YYANRAFAHTKLEEYGSAIQDASKAIE-----IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQKV 122 (556)
Q Consensus 50 a~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~l 122 (556)
.+..+-..|.+.|+.++|...+...-+ ..| +...|.-+-..|.+.|+.++|.+.|++..+.. | |...+..+
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL 206 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence 477888899999999999999976432 344 57899999999999999999999999998764 4 45556666
Q ss_pred HHHHHHHhh
Q 008730 123 KECEKAVKK 131 (556)
Q Consensus 123 ~~~~~~~~~ 131 (556)
-.++.+.|+
T Consensus 207 I~glcK~G~ 215 (1134)
T 3spa_A 207 LQCMGRQDQ 215 (1134)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHhCCC
Confidence 556655554
No 331
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=51.20 E-value=96 Score=30.03 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----C---HHHH--------HHHHHHHHHhhCHHHHHHHHHHHH
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-----N---AVYY--------ANRAFAHTKLEEYGSAIQDASKAI 75 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-----~---~~a~--------~~lg~~~~~~g~~~~A~~~~~~al 75 (556)
.......+.|..++..|++++|+..|+.+|..-|- . .++. +-+|.. +++.+-+-+.+.-.+.+
T Consensus 112 ~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~-iEl~Rr~l~~~~~kR~l 190 (325)
T 3mv2_A 112 DVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLS-IELERRSLKEGNTVRML 190 (325)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHH-HHHHHHTCCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCcccHHHHH
Confidence 44556778899999999999999999999986431 1 1221 111211 11111100001112222
Q ss_pred Hh---------CCCChHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008730 76 EI---------DPRYPKGYYRRG-AAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (556)
Q Consensus 76 ~l---------~p~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 118 (556)
++ .|..-..-.+.| ...++.++|..|....++.|++.|....+
T Consensus 191 ELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a 243 (325)
T 3mv2_A 191 ELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA 243 (325)
T ss_dssp HHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHH
Confidence 22 222211222222 24578899999999999999999975443
No 332
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=49.16 E-value=98 Score=26.67 Aligned_cols=20 Identities=5% Similarity=-0.069 Sum_probs=12.7
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 008730 91 AYLAMGKFKEALKDFQQVKK 110 (556)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~ 110 (556)
.+.+.|+...|...+.+++.
T Consensus 84 ~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 84 KHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 33455677777777777766
No 333
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=48.84 E-value=24 Score=28.73 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008730 13 RAEELKALANEAFRAKKYSQAIDLYSQ 39 (556)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~Al~~~~~ 39 (556)
.+..+...|...-..|+|++|+.+|.+
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~ 43 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQH 43 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 334444444444444444444444443
No 334
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=48.32 E-value=33 Score=35.20 Aligned_cols=88 Identities=10% Similarity=-0.030 Sum_probs=63.5
Q ss_pred cCHHHHHHHHHHHHHhCCC-------C-----H----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--C--------C
Q 008730 28 KKYSQAIDLYSQAIELNSQ-------N-----A----VYYANRAFAHTKLEEYGSAIQDASKAIEIDP--R--------Y 81 (556)
Q Consensus 28 g~~~~Al~~~~~al~~~p~-------~-----~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~--------~ 81 (556)
...++|.....++....-+ . - ..-.++-.+|.++++..-|...++..-...+ . .
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 3456677777777776211 1 1 1233455789999998888877765544332 1 2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 008730 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKL-SPND 115 (556)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~ 115 (556)
...+|.+|..+...++|.+|.+++..|++. .|..
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 568899999999999999999999999999 7765
No 335
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=47.99 E-value=28 Score=26.87 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=11.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQV 108 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~a 108 (556)
+-.+|..+.+.|+|++||++.++|
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 334444444555555554444443
No 336
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=46.02 E-value=25 Score=26.42 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~ 43 (556)
........+|+.+...|+|+.|+.+|+.+++.
T Consensus 10 ~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 10 QMIVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 34556677888888889999999888888764
No 337
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=45.90 E-value=1.4e+02 Score=29.98 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHH
Q 008730 66 SAIQDASKAIEI-----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SPNDPDAAQKVKECEKAV 129 (556)
Q Consensus 66 ~A~~~~~~al~l-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~l~~~~~~~ 129 (556)
.++..|++|+.. .......|..+|-.+++.+++.+|+..|..|-.. ..++.+.+..+..+...+
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIanel 356 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDV 356 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHHHHh
Confidence 355666666653 3456888899999999999999999999998775 456777777666554433
No 338
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=45.88 E-value=41 Score=30.23 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008730 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (556)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 116 (556)
...+|.+|..+...++|.+|.+++..|++..|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 34566777777777777777777777777766543
No 339
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=45.33 E-value=52 Score=25.18 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 008730 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELN 44 (556)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~ 44 (556)
..++.+...|..+++.++|.+|+..|+++..+.
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 456777777777788888888888887777554
No 340
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=44.70 E-value=32 Score=26.84 Aligned_cols=34 Identities=12% Similarity=0.269 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008730 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (556)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 119 (556)
..+|..+...|+++.|+.+|-+|+...|.-...+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL 57 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 57 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4567777777777778777777777777654443
No 341
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=41.37 E-value=32 Score=26.83 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=22.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 008730 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNA 48 (556)
Q Consensus 19 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~~ 48 (556)
.+|..+...|+++.|+.+|-+|+...|.-.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 567777788888888887777777776533
No 342
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=41.18 E-value=54 Score=35.36 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 008730 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (556)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 132 (556)
.......|...+..|+|.-|.+....++..+|+|..+...++.++.+++..
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 456777888889999999999999999999999999999999999999864
No 343
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.52 E-value=1.1e+02 Score=26.36 Aligned_cols=33 Identities=3% Similarity=0.088 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN 47 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~ 47 (556)
..-+..|..++..|+|=+|-+.++.+-...+..
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~ 65 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRG 65 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSS
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCC
Confidence 344566677777777777777777776665443
No 344
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=38.81 E-value=1.4e+02 Score=23.52 Aligned_cols=86 Identities=15% Similarity=0.024 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 94 (556)
..+-++|..-.-....++|... -..++..+...-+-.-+...++..|+|++|....+... .|..--.+|.|-.+
T Consensus 7 ~lLAE~AL~gTG~H~HqEA~tI-AdwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~r 80 (115)
T 2uwj_G 7 RELAELALAGSGQHCHEEALCI-AEWLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWH 80 (115)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHh
Confidence 3444555555566678888654 44567777733344455677888999999987654432 45555567778888
Q ss_pred cCCHHHHHHHHH
Q 008730 95 MGKFKEALKDFQ 106 (556)
Q Consensus 95 ~g~~~~A~~~~~ 106 (556)
.|-.+++...+.
T Consensus 81 lGl~s~le~rL~ 92 (115)
T 2uwj_G 81 LGLGAALDRRLA 92 (115)
T ss_dssp TTCHHHHHHHHH
T ss_pred cccHHHHHHHHH
Confidence 998888877763
No 345
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=38.65 E-value=1.5e+02 Score=23.53 Aligned_cols=85 Identities=15% Similarity=0.067 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 008730 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (556)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 94 (556)
..+-++|..-.-....++|... -..++..+...-+-.-+...++..|+|++|....+... .|..--.+|.|-.+
T Consensus 8 ~lLAE~AL~gTG~H~HqEA~tI-AdwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~r 81 (116)
T 2p58_C 8 VLLAEIALIGTGNHYHEEANCI-AEWLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYR 81 (116)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHh
Confidence 3444555555566677887554 44566666633344455667888899999887665433 44455556777888
Q ss_pred cCCHHHHHHHH
Q 008730 95 MGKFKEALKDF 105 (556)
Q Consensus 95 ~g~~~~A~~~~ 105 (556)
.|-.+++...+
T Consensus 82 lGl~s~le~rL 92 (116)
T 2p58_C 82 LGLGSALESRL 92 (116)
T ss_dssp HTCHHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 88888877666
No 346
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.12 E-value=69 Score=36.24 Aligned_cols=68 Identities=13% Similarity=0.045 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------------CC--CHHHHHHHHHHHHHhhCHHHHHHHHH
Q 008730 16 ELKALANEAFRAKKYSQAIDLYSQAIELN---------------------SQ--NAVYYANRAFAHTKLEEYGSAIQDAS 72 (556)
Q Consensus 16 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~---------------------p~--~~~a~~~lg~~~~~~g~~~~A~~~~~ 72 (556)
.-+-+|.+++..|++++|..+|++|-.-- +. ....|......+.+.+-++-+++..+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44789999999999999999999875210 11 12356667788888899999999999
Q ss_pred HHHHh-CCCChH
Q 008730 73 KAIEI-DPRYPK 83 (556)
Q Consensus 73 ~al~l-~p~~~~ 83 (556)
.|++. .+++..
T Consensus 922 lAI~~~~~dd~~ 933 (950)
T 4gq2_M 922 LADASKETDDED 933 (950)
T ss_dssp HHHHTCCSCCHH
T ss_pred HHHhhcccCCcc
Confidence 99975 344443
No 347
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=33.12 E-value=33 Score=31.35 Aligned_cols=107 Identities=18% Similarity=0.284 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCeeeecCCCCCcceEeccCCCCHHHHHHHHHh-cCCCCCCCCeeeeccccc--CCCChH
Q 008730 262 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFEL-NGLPSEENPYLFNGDFVD--RGSFSV 338 (556)
Q Consensus 262 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vigDiHG~~~~l~~~l~~-~~~~~~~~~~vflGD~vd--rG~~s~ 338 (556)
++.+++..+=..+.++.++.-++.....+...-+-...+ +|+.+ -.++++. .. ....-+++-+||++| +|++-.
T Consensus 112 ~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~-~~~~~-k~~l~~~~~~-~~~~v~vy~~g~~~dlC~G~Hv~ 188 (224)
T 1tke_A 112 LTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFAN-RGESY-KVSILDENIA-HDDKPGLYFHEEYVDMCRGPHVP 188 (224)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHH-TTCHH-HHHHHHHHSC-TTCCCEEEEETTEEEEESCCCCS
T ss_pred CCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHH-cCCch-HHHHhccccC-CCCeeEEEEeCCEEEECCCcCCC
Confidence 555555555556666666555554433321100111111 23322 2344442 21 123456888999886 787632
Q ss_pred HHHHHHHhccccCCCeEEEecccccccccccccCc
Q 008730 339 EVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 373 (556)
Q Consensus 339 e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~g~ 373 (556)
-+= .|-..|+..-.. -..||+....++...||-
T Consensus 189 ~Tg-~i~~fkl~~~~~-~yw~g~~~~~~lqRiyg~ 221 (224)
T 1tke_A 189 NMR-FCHHFKLMKTAG-AYWRGDSNNKMLQRIYGT 221 (224)
T ss_dssp BGG-GCCCEEEEEEEE-EEGGGCTTSCEEEEEEEE
T ss_pred cCc-ccceEEEEEecc-eeEcCCCCCceeEEEEEe
Confidence 221 122233222112 346999999988888873
No 348
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=28.50 E-value=70 Score=24.16 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008730 64 YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (556)
Q Consensus 64 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 110 (556)
.++|+....+|++. -+.|++++|+.+|..+++
T Consensus 16 ~~~Ai~lv~~Ave~---------------D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 16 EEMARKYAINAVKA---------------DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHHH
Confidence 34566666666544 345555555555554444
No 349
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=28.15 E-value=1.4e+02 Score=29.34 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=35.7
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 008730 33 AIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (556)
Q Consensus 33 Al~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 77 (556)
++..|.+|+.. ...+..-|..+|..+++.+++.+|+..+..|-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 67788888765 3445667888999999999999999998777543
No 350
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=27.64 E-value=92 Score=31.84 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=40.2
Q ss_pred CHHHHHHHHHhcCCCCCCCCeeeecccccCCCC------------------hH-HHHHHHHh--cc-ccCCCeEEEeccc
Q 008730 304 QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSF------------------SV-EVILTLFA--FK-CMCPSAIYLSRGN 361 (556)
Q Consensus 304 ~~~~l~~~l~~~~~~~~~~~~vflGD~vdrG~~------------------s~-e~l~~l~~--lk-~~~p~~v~~lrGN 361 (556)
.|+-|..+++.+.-...-+.+|++|.+||.-.. +. +++..++. ++ +..--+|+++.|+
T Consensus 164 ~yepL~~Ll~~v~~~~kPdvLIL~GPFvD~~hp~i~~G~~p~~~~~~~~~~t~~~lF~~~i~~il~~l~~~t~VVlVPS~ 243 (460)
T 3flo_A 164 SLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLIPST 243 (460)
T ss_dssp CCHHHHHHHHHCCCCCCCSEEEEESCSSBTTCHHHHHTCCCCCTTCSSCCSSHHHHHHHHTHHHHTTSCTTSEEEEECCT
T ss_pred ChHHHHHHHHHHHhccCCCEEEEecCcccccCcccccCcccccccccccccCHHHHHHHHHHHHHHhccCCCEEEEeCCc
Confidence 478888999987543224569999999997521 11 33333321 11 2223689999999
Q ss_pred ccccc
Q 008730 362 HESKS 366 (556)
Q Consensus 362 HE~~~ 366 (556)
||...
T Consensus 244 rD~~~ 248 (460)
T 3flo_A 244 KDAIS 248 (460)
T ss_dssp TBTTC
T ss_pred ccccC
Confidence 99853
No 351
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=27.07 E-value=4.3e+02 Score=25.41 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----C----HHH--------HHHHHHHHHHhhC-------HHHH
Q 008730 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----N----AVY--------YANRAFAHTKLEE-------YGSA 67 (556)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~----~----~~a--------~~~lg~~~~~~g~-------~~~A 67 (556)
........+.|..++..|++++|+..|+.+|..-|- + .++ .+-+|... ++.+ .++.
T Consensus 99 l~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~i-El~Rr~l~~~~~~~~ 177 (320)
T 3mkr_B 99 LNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSM-ETERKKLPKETLEQQ 177 (320)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTSCCCSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccCCchhH
Confidence 344556778999999999999999999999987642 1 122 11122211 2211 1222
Q ss_pred HHHHHHHH-----HhCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCC
Q 008730 68 IQDASKAI-----EIDPRYPKGYYRRGA-AYLAMGKFKEALKDFQQVKKLSPND 115 (556)
Q Consensus 68 ~~~~~~al-----~l~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~l~p~~ 115 (556)
...++-+. .+.|..-..-.+.|. ..++.++|..|...-++.|++.|..
T Consensus 178 kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 231 (320)
T 3mkr_B 178 KRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP 231 (320)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 22222221 112322222222232 4578899999999999999998863
No 352
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=26.83 E-value=77 Score=23.85 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 008730 65 GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK-------DFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (556)
Q Consensus 65 ~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~-------~~~~al~l~p~~~~~~~~l~~~~~~~~~ 131 (556)
+.|+....+|++.| +.|++++|+. .|.++++..|+...--....++...+.+
T Consensus 9 ~~Ai~lv~~Ave~D---------------~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~R 67 (83)
T 2v6y_A 9 DMARKYAILAVKAD---------------KEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKR 67 (83)
T ss_dssp HHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46666666665553 4455555444 4445555565544333334444444443
No 353
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=25.86 E-value=60 Score=24.29 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008730 85 YYRRGAAYLAMGKFKEALKDFQQVKKL 111 (556)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~l 111 (556)
...+|.=|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456788888899999999999888774
No 354
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.68 E-value=5.2e+02 Score=25.90 Aligned_cols=61 Identities=5% Similarity=-0.143 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHH-hCC-C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008730 49 VYYANRAFAHTKLEEYGSAIQDASKAIE-IDP-R----YPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (556)
Q Consensus 49 ~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~p-~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al 109 (556)
.....|+..|...|++.+|...+..... ..- . -.+.+......+...+++..|...++++.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456789999999999999999988753 211 1 15678888899999999999999999874
No 355
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=25.67 E-value=3.6e+02 Score=24.04 Aligned_cols=70 Identities=6% Similarity=-0.019 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 008730 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78 (556)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~Al~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 78 (556)
..++.-...|...+..+ ..+...++.+.|....... -..+..|...|..+...|++.+|.+.|+.+++..
T Consensus 74 kND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
No 356
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=22.34 E-value=2.1e+02 Score=22.00 Aligned_cols=27 Identities=11% Similarity=0.088 Sum_probs=15.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC
Q 008730 19 ALANEAFRAKKYSQAIDLYSQAIELNS 45 (556)
Q Consensus 19 ~lg~~~~~~g~~~~Al~~~~~al~~~p 45 (556)
..|..++..|+|=+|-+.++..-...|
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~ 32 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKAT 32 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 345555666666666666666555553
No 357
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=27.34 E-value=19 Score=38.98 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 008730 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101 (556)
Q Consensus 50 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A 101 (556)
.....|...+..|+|.-|.+.++.++..+|++.++...++.+|.++|.-.+.
T Consensus 463 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 463 AVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 3445666666777888888888888888888888887788888777765554
No 358
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.15 E-value=90 Score=25.23 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHH
Q 008730 30 YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---------------YPKGYYRRGAAYLA 94 (556)
Q Consensus 30 ~~~Al~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---------------~~~~~~~lg~~~~~ 94 (556)
|++|..+..+||+++. .|.-...+.-|.+++..+++++.+..+ .-+..-+++.+..+
T Consensus 19 h~~AF~~Is~AL~~DE--------~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~R 90 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDE--------LGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTR 90 (116)
T ss_dssp HHHHHHHHHHHHHHHH--------HTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhh--------cCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCHHHH
Q 008730 95 MGKFKEA 101 (556)
Q Consensus 95 ~g~~~~A 101 (556)
++..+..
T Consensus 91 L~~Le~~ 97 (116)
T 2dl1_A 91 LEILEKG 97 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
No 359
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=20.30 E-value=2.1e+02 Score=28.90 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008730 64 YGSAIQDASKAIEIDPR--------YPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (556)
Q Consensus 64 ~~~A~~~~~~al~l~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 110 (556)
|+..+.+++.|+..-|. -..++..+|.+|...++|++|++..++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 45667777777776443 256888899999999999999999998875
Done!