Query 008731
Match_columns 556
No_of_seqs 284 out of 2658
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 15:52:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 2E-104 5E-109 806.7 41.0 505 1-555 67-574 (574)
2 PRK10953 cysJ sulfite reductas 100.0 3E-90 6.4E-95 760.6 55.0 468 1-555 128-600 (600)
3 KOG1158 NADP/FAD dependent oxi 100.0 1.2E-91 2.7E-96 757.6 42.4 520 2-555 113-645 (645)
4 TIGR01931 cysJ sulfite reducta 100.0 1.9E-88 4.1E-93 750.1 55.0 468 1-555 125-597 (597)
5 COG0369 CysJ Sulfite reductase 100.0 3E-89 6.5E-94 741.4 46.0 469 1-555 114-587 (587)
6 cd06204 CYPOR NADPH cytochrome 100.0 3.3E-78 7.1E-83 643.8 45.6 383 158-555 5-416 (416)
7 cd06203 methionine_synthase_re 100.0 1.1E-77 2.3E-82 636.9 43.3 375 162-555 2-398 (398)
8 cd06207 CyPoR_like NADPH cytoc 100.0 2.1E-77 4.5E-82 632.5 43.8 378 161-555 1-382 (382)
9 cd06202 Nitric_oxide_synthase 100.0 4.9E-77 1.1E-81 632.9 46.1 384 161-556 1-403 (406)
10 cd06206 bifunctional_CYPOR The 100.0 2.9E-75 6.2E-80 616.6 43.6 373 161-555 1-384 (384)
11 cd06199 SiR Cytochrome p450- l 100.0 1.1E-71 2.3E-76 583.9 40.7 354 161-555 1-360 (360)
12 PRK06214 sulfite reductase; Pr 100.0 6E-71 1.3E-75 595.7 41.1 360 156-555 166-530 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 1.6E-46 3.5E-51 367.5 20.0 211 158-373 8-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 9.8E-40 2.1E-44 339.5 28.3 267 155-555 87-367 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 7.5E-37 1.6E-41 308.0 24.6 228 319-555 33-267 (267)
16 cd06201 SiR_like2 Cytochrome p 100.0 1.3E-34 2.8E-39 295.1 29.1 188 333-555 100-289 (289)
17 cd06208 CYPOR_like_FNR These f 100.0 8.9E-35 1.9E-39 296.1 22.8 223 319-555 42-286 (286)
18 PLN03116 ferredoxin--NADP+ red 100.0 9.8E-35 2.1E-39 298.5 22.0 224 319-555 58-307 (307)
19 cd06200 SiR_like1 Cytochrome p 100.0 6.6E-35 1.4E-39 290.5 19.7 209 319-555 33-245 (245)
20 TIGR03224 benzo_boxA benzoyl-C 100.0 1.3E-33 2.9E-38 300.1 23.3 221 319-555 177-411 (411)
21 cd00322 FNR_like Ferredoxin re 99.9 5.5E-26 1.2E-30 222.4 13.3 184 319-525 24-213 (223)
22 cd06189 flavin_oxioreductase N 99.9 5.7E-26 1.2E-30 223.2 13.4 180 319-525 27-212 (224)
23 PRK10926 ferredoxin-NADP reduc 99.9 4E-26 8.7E-31 227.8 11.8 184 319-525 32-228 (248)
24 cd06188 NADH_quinone_reductase 99.9 1.8E-25 4E-30 227.4 15.2 179 333-525 86-271 (283)
25 cd06211 phenol_2-monooxygenase 99.9 1.9E-25 4.1E-30 221.6 14.3 181 319-525 37-226 (238)
26 cd06190 T4MO_e_transfer_like T 99.9 1.4E-25 3.1E-30 221.4 13.0 183 319-525 25-218 (232)
27 PRK08051 fre FMN reductase; Va 99.9 1.4E-25 3E-30 221.7 12.7 180 319-525 31-217 (232)
28 cd06209 BenDO_FAD_NAD Benzoate 99.9 2.2E-25 4.7E-30 219.6 13.7 177 319-524 32-214 (228)
29 cd06195 FNR1 Ferredoxin-NADP+ 99.9 1.6E-25 3.5E-30 222.5 12.7 185 319-526 26-224 (241)
30 PRK07609 CDP-6-deoxy-delta-3,4 99.9 2.2E-25 4.7E-30 232.7 13.5 179 319-524 133-319 (339)
31 PRK11872 antC anthranilate dio 99.9 4.6E-25 1E-29 230.0 14.3 179 319-525 138-323 (340)
32 PRK13289 bifunctional nitric o 99.9 3.6E-25 7.7E-30 236.1 13.7 182 319-525 186-380 (399)
33 cd06187 O2ase_reductase_like T 99.9 7.1E-25 1.5E-29 215.2 14.4 180 319-525 25-212 (224)
34 PRK05464 Na(+)-translocating N 99.9 5.7E-25 1.2E-29 234.8 14.7 181 331-525 208-395 (409)
35 cd06212 monooxygenase_like The 99.9 6.7E-25 1.5E-29 216.7 13.6 180 319-525 31-219 (232)
36 TIGR01941 nqrF NADH:ubiquinone 99.9 8.7E-25 1.9E-29 233.1 15.3 181 331-525 204-391 (405)
37 PRK10684 HCP oxidoreductase, N 99.9 6.5E-25 1.4E-29 228.4 13.8 182 319-525 38-225 (332)
38 cd06191 FNR_iron_sulfur_bindin 99.9 5.3E-25 1.2E-29 217.3 12.3 177 319-524 29-218 (231)
39 cd06210 MMO_FAD_NAD_binding Me 99.9 7.8E-25 1.7E-29 216.8 13.4 181 319-525 36-223 (236)
40 cd06213 oxygenase_e_transfer_s 99.9 1.2E-24 2.6E-29 214.2 13.9 178 319-525 29-215 (227)
41 PRK08345 cytochrome-c3 hydroge 99.9 8.4E-25 1.8E-29 223.0 12.5 178 319-525 39-234 (289)
42 cd06194 FNR_N-term_Iron_sulfur 99.9 3.9E-24 8.4E-29 209.8 14.6 180 319-525 25-209 (222)
43 PRK05713 hypothetical protein; 99.9 2.7E-24 5.9E-29 221.8 12.6 174 319-525 120-296 (312)
44 cd06184 flavohem_like_fad_nad_ 99.9 4.6E-24 1E-28 212.8 13.1 178 319-525 38-231 (247)
45 cd06215 FNR_iron_sulfur_bindin 99.9 6.8E-24 1.5E-28 209.2 13.0 178 319-524 29-218 (231)
46 cd06196 FNR_like_1 Ferredoxin 99.9 6.5E-24 1.4E-28 207.6 12.5 175 319-525 29-208 (218)
47 cd06216 FNR_iron_sulfur_bindin 99.9 1.2E-23 2.5E-28 209.4 12.6 179 319-525 47-232 (243)
48 cd06221 sulfite_reductase_like 99.9 1.7E-23 3.7E-28 209.5 13.0 178 319-525 29-212 (253)
49 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 1.9E-23 4E-28 219.3 12.0 184 319-525 34-229 (352)
50 cd06218 DHOD_e_trans FAD/NAD b 99.9 4.3E-23 9.4E-28 205.7 13.1 170 319-525 26-202 (246)
51 cd06217 FNR_iron_sulfur_bindin 99.9 2.6E-23 5.7E-28 205.6 11.1 179 319-525 32-223 (235)
52 cd06198 FNR_like_3 NAD(P) bind 99.9 6.7E-23 1.5E-27 200.2 12.7 174 319-525 24-203 (216)
53 cd06214 PA_degradation_oxidore 99.9 7.1E-23 1.5E-27 203.3 13.0 181 319-525 34-228 (241)
54 PRK08221 anaerobic sulfite red 99.9 6.6E-23 1.4E-27 206.3 11.8 173 319-525 34-214 (263)
55 COG1018 Hmp Flavodoxin reducta 99.9 1.2E-22 2.6E-27 203.3 12.8 178 319-527 36-220 (266)
56 cd06183 cyt_b5_reduct_like Cyt 99.9 1.2E-22 2.6E-27 200.5 12.6 179 319-524 30-223 (234)
57 PTZ00319 NADH-cytochrome B5 re 99.9 2.4E-22 5.1E-27 205.9 13.4 194 319-525 65-290 (300)
58 PTZ00274 cytochrome b5 reducta 99.9 2.5E-22 5.4E-27 207.0 13.2 165 332-521 102-281 (325)
59 TIGR02911 sulfite_red_B sulfit 99.9 1.9E-22 4.1E-27 202.7 12.0 175 319-525 32-212 (261)
60 cd06185 PDR_like Phthalate dio 99.9 3.4E-22 7.4E-27 194.4 13.3 170 319-525 27-198 (211)
61 PRK00054 dihydroorotate dehydr 99.9 1.3E-21 2.7E-26 195.7 11.4 165 319-525 33-203 (250)
62 cd06220 DHOD_e_trans_like2 FAD 99.8 3E-21 6.6E-26 190.9 11.6 163 319-525 25-189 (233)
63 cd06219 DHOD_e_trans_like1 FAD 99.8 3.3E-21 7.2E-26 192.4 11.4 170 319-524 28-201 (248)
64 COG2871 NqrF Na+-transporting 99.8 6.1E-21 1.3E-25 184.1 12.4 185 332-530 210-401 (410)
65 PRK06222 ferredoxin-NADP(+) re 99.8 4.5E-21 9.8E-26 194.9 11.3 171 319-525 29-203 (281)
66 COG0543 UbiB 2-polyprenylpheno 99.8 1.2E-20 2.6E-25 188.5 12.9 177 318-526 36-215 (252)
67 cd06192 DHOD_e_trans_like FAD/ 99.8 1E-20 2.3E-25 188.2 11.3 170 319-526 26-201 (243)
68 cd06197 FNR_like_2 FAD/NAD(P) 99.8 1.3E-20 2.9E-25 184.7 11.2 144 332-524 59-211 (220)
69 KOG0534 NADH-cytochrome b-5 re 99.8 4E-20 8.7E-25 184.2 14.1 166 331-523 98-274 (286)
70 PLN02252 nitrate reductase [NA 99.8 3.8E-20 8.3E-25 211.9 12.8 191 320-525 667-878 (888)
71 PRK05802 hypothetical protein; 99.8 9.5E-20 2.1E-24 187.9 11.1 168 319-525 96-276 (320)
72 COG4097 Predicted ferric reduc 99.8 2.4E-19 5.2E-24 179.5 10.9 174 319-525 244-423 (438)
73 PTZ00306 NADH-dependent fumara 99.8 2.1E-19 4.4E-24 213.8 11.8 181 319-525 949-1151(1167)
74 PRK12778 putative bifunctional 99.8 2.6E-18 5.6E-23 197.1 12.0 170 319-524 29-202 (752)
75 cd06193 siderophore_interactin 99.7 3.2E-18 6.9E-23 169.5 9.4 157 331-524 62-219 (235)
76 cd06186 NOX_Duox_like_FAD_NADP 99.7 8.3E-18 1.8E-22 163.4 9.6 159 319-524 26-197 (210)
77 PF00175 NAD_binding_1: Oxidor 99.7 1.6E-17 3.5E-22 144.0 7.8 104 405-520 1-109 (109)
78 PRK05723 flavodoxin; Provision 99.7 4.1E-17 8.8E-22 150.0 9.5 83 1-85 67-150 (151)
79 PRK12779 putative bifunctional 99.7 1.2E-16 2.5E-21 185.6 13.2 180 319-525 678-869 (944)
80 PRK09004 FMN-binding protein M 99.7 7.5E-17 1.6E-21 147.6 8.9 81 1-84 66-146 (146)
81 PRK08105 flavodoxin; Provision 99.7 2.8E-16 6E-21 144.4 9.1 80 1-84 68-147 (149)
82 PRK12775 putative trifunctiona 99.6 4E-16 8.8E-21 182.6 12.0 169 319-524 29-202 (1006)
83 PLN02844 oxidoreductase/ferric 99.5 2.2E-13 4.8E-18 152.5 13.7 175 319-514 340-538 (722)
84 PLN02292 ferric-chelate reduct 99.5 1.9E-13 4.1E-18 152.7 12.1 172 319-514 353-549 (702)
85 PLN02631 ferric-chelate reduct 99.4 2.1E-13 4.5E-18 152.0 9.7 142 319-479 336-492 (699)
86 KOG3378 Globins and related he 99.2 6.8E-12 1.5E-16 121.1 3.3 160 333-527 201-370 (385)
87 PF00258 Flavodoxin_1: Flavodo 99.2 1.5E-11 3.3E-16 112.0 3.7 74 3-76 68-143 (143)
88 PRK07308 flavodoxin; Validated 99.0 8.1E-10 1.7E-14 101.2 7.8 75 2-81 69-143 (146)
89 KOG1160 Fe-S oxidoreductase [E 99.0 8.7E-10 1.9E-14 112.9 8.0 79 4-87 112-195 (601)
90 PRK06703 flavodoxin; Provision 98.7 4.1E-08 8.8E-13 90.4 8.6 79 2-85 69-148 (151)
91 PRK12359 flavodoxin FldB; Prov 98.6 1.8E-07 3.8E-12 87.8 9.5 79 2-85 66-169 (172)
92 PF08030 NAD_binding_6: Ferric 98.5 1.6E-07 3.4E-12 86.7 6.8 72 402-479 3-79 (156)
93 COG0716 FldA Flavodoxins [Ener 98.4 7E-07 1.5E-11 82.3 7.8 77 2-83 69-150 (151)
94 TIGR01753 flav_short flavodoxi 98.4 9.3E-07 2E-11 79.8 7.3 73 2-80 67-139 (140)
95 PRK06756 flavodoxin; Provision 98.3 1.9E-06 4E-11 79.1 7.8 78 2-84 70-147 (148)
96 TIGR01752 flav_long flavodoxin 98.3 2.7E-06 5.9E-11 79.7 8.6 51 3-58 66-118 (167)
97 PRK09271 flavodoxin; Provision 98.3 2.4E-06 5.2E-11 79.6 7.5 74 1-84 71-147 (160)
98 TIGR01754 flav_RNR ribonucleot 98.1 4.8E-06 1E-10 75.7 6.8 66 2-80 71-139 (140)
99 PF00970 FAD_binding_6: Oxidor 98.1 5.1E-07 1.1E-11 76.7 0.3 65 319-395 31-98 (99)
100 PRK06567 putative bifunctional 98.1 4.5E-06 9.8E-11 96.1 7.2 94 306-414 804-907 (1028)
101 KOG0039 Ferric reductase, NADH 98.0 2.5E-05 5.4E-10 88.2 11.1 124 320-456 384-536 (646)
102 TIGR00333 nrdI ribonucleoside- 97.8 3.7E-05 8E-10 68.2 5.2 29 21-49 64-93 (125)
103 PRK09267 flavodoxin FldA; Vali 97.6 0.0003 6.4E-09 66.0 8.5 48 3-55 68-117 (169)
104 COG2375 ViuB Siderophore-inter 97.4 0.0032 6.9E-08 62.7 13.3 166 330-536 84-250 (265)
105 PRK03600 nrdI ribonucleotide r 97.2 0.00086 1.9E-08 60.4 6.4 57 20-82 73-130 (134)
106 PRK11921 metallo-beta-lactamas 96.4 0.0055 1.2E-07 65.5 6.2 75 1-84 319-393 (394)
107 PRK02551 flavoprotein NrdI; Pr 94.9 0.025 5.4E-07 52.1 3.6 29 19-47 93-122 (154)
108 PRK05452 anaerobic nitric oxid 94.7 0.059 1.3E-06 59.1 6.4 75 1-85 323-397 (479)
109 KOG0560 Sulfite reductase (fer 94.0 0.024 5.3E-07 59.8 1.6 63 25-87 1-69 (638)
110 PF08021 FAD_binding_9: Sidero 90.7 0.15 3.2E-06 44.9 1.9 53 331-394 65-117 (117)
111 cd06182 CYPOR_like NADPH cytoc 90.6 0.32 6.9E-06 49.1 4.5 42 162-203 2-44 (267)
112 PRK05569 flavodoxin; Provision 88.4 1.2 2.7E-05 39.9 6.2 70 2-80 70-139 (141)
113 PRK05568 flavodoxin; Provision 87.3 1.5 3.2E-05 39.4 6.1 59 18-80 80-139 (142)
114 PF08022 FAD_binding_8: FAD-bi 83.1 0.2 4.4E-06 42.9 -1.6 34 319-354 31-69 (105)
115 TIGR03224 benzo_boxA benzoyl-C 80.3 3.5 7.5E-05 44.4 6.2 49 155-203 139-188 (411)
116 PRK06242 flavodoxin; Provision 79.5 5.2 0.00011 36.1 6.3 37 18-57 72-108 (150)
117 PF07972 Flavodoxin_NdrI: NrdI 72.0 2.9 6.4E-05 36.9 2.4 27 21-47 73-100 (122)
118 cd06208 CYPOR_like_FNR These f 60.9 18 0.0004 36.7 6.0 41 161-202 12-52 (286)
119 PLN03116 ferredoxin--NADP+ red 59.3 19 0.0004 37.1 5.8 45 158-203 24-69 (307)
120 TIGR02667 moaB_proteo molybden 57.4 12 0.00027 34.7 3.7 47 18-64 2-48 (163)
121 COG1780 NrdI Protein involved 51.2 27 0.00058 31.4 4.5 59 20-84 74-133 (141)
122 cd06200 SiR_like1 Cytochrome p 49.7 32 0.0007 34.0 5.5 42 162-203 3-44 (245)
123 PRK07116 flavodoxin; Provision 47.6 61 0.0013 29.7 6.7 54 18-80 104-158 (160)
124 KOG4723 Uncharacterized conser 46.0 97 0.0021 29.9 7.6 115 432-556 19-140 (248)
125 PF00970 FAD_binding_6: Oxidor 44.3 53 0.0011 27.1 5.3 37 161-202 3-41 (99)
126 TIGR01755 flav_wrbA NAD(P)H:qu 42.4 57 0.0012 31.2 5.8 55 1-56 87-141 (197)
127 TIGR00106 uncharacterized prot 37.4 71 0.0015 27.0 4.9 48 19-66 31-81 (97)
128 cd00758 MoCF_BD MoCF_BD: molyb 36.6 32 0.00069 30.6 2.8 42 22-63 1-44 (133)
129 cd01075 NAD_bind_Leu_Phe_Val_D 34.4 71 0.0015 30.6 5.1 32 16-55 24-55 (200)
130 TIGR00177 molyb_syn molybdenum 34.2 33 0.00072 31.0 2.6 54 21-76 1-63 (144)
131 TIGR03567 FMN_reduc_SsuE FMN r 33.1 1.6E+02 0.0035 27.2 7.1 48 2-55 85-132 (171)
132 cd00886 MogA_MoaB MogA_MoaB fa 31.2 54 0.0012 29.9 3.5 44 21-64 1-46 (152)
133 KOG0025 Zn2+-binding dehydroge 31.1 23 0.00049 36.1 1.0 63 187-260 94-160 (354)
134 PF02826 2-Hacid_dh_C: D-isome 28.1 1.1E+02 0.0025 28.4 5.2 35 13-55 29-63 (178)
135 PF06757 Ins_allergen_rp: Inse 27.0 1.3E+02 0.0027 28.3 5.3 45 246-293 2-47 (179)
136 PF03445 DUF294: Putative nucl 26.9 2.5E+02 0.0054 25.1 7.0 64 19-86 46-134 (138)
137 PRK10569 NAD(P)H-dependent FMN 26.7 2E+02 0.0044 27.3 6.7 49 1-55 85-133 (191)
138 PRK03767 NAD(P)H:quinone oxido 24.0 1.8E+02 0.0039 27.6 5.9 55 1-56 88-142 (200)
139 cd06212 monooxygenase_like The 23.6 1.4E+02 0.0031 28.7 5.2 38 161-203 4-42 (232)
140 cd06217 FNR_iron_sulfur_bindin 23.5 1.2E+02 0.0026 29.3 4.6 38 161-203 5-43 (235)
141 PRK14841 undecaprenyl pyrophos 23.4 2.3E+02 0.0051 28.0 6.5 59 471-529 53-117 (233)
142 cd06196 FNR_like_1 Ferredoxin 23.3 1.3E+02 0.0027 28.8 4.7 38 161-204 4-41 (218)
143 PF06753 Bradykinin: Bradykini 23.2 26 0.00056 19.8 -0.1 9 410-418 6-14 (19)
144 COG3937 Uncharacterized conser 23.0 61 0.0013 27.8 2.0 37 513-549 20-56 (108)
145 PF03358 FMN_red: NADPH-depend 21.7 1.8E+02 0.004 25.8 5.2 54 1-57 89-142 (152)
146 PF02525 Flavodoxin_2: Flavodo 21.6 4.9E+02 0.011 24.4 8.4 68 16-84 122-199 (199)
147 PF04954 SIP: Siderophore-inte 21.4 1.5E+02 0.0033 25.7 4.4 98 402-524 3-101 (119)
148 PF13580 SIS_2: SIS domain; PD 21.4 1.7E+02 0.0036 26.1 4.8 28 487-515 20-47 (138)
149 PF11132 SplA: Transcriptional 21.2 64 0.0014 25.6 1.7 17 189-205 4-20 (75)
150 PF01910 DUF77: Domain of unkn 21.2 1.1E+02 0.0024 25.5 3.2 48 19-66 29-79 (92)
151 cd05211 NAD_bind_Glu_Leu_Phe_V 21.0 2E+02 0.0043 28.0 5.6 31 17-55 20-50 (217)
152 PF04703 FaeA: FaeA-like prote 20.8 2.3E+02 0.005 21.8 4.7 26 527-552 22-47 (62)
153 cd06213 oxygenase_e_transfer_s 20.3 1.8E+02 0.0038 28.0 5.1 37 161-203 4-40 (227)
154 PF02080 TrkA_C: TrkA-C domain 20.3 1.2E+02 0.0025 23.2 3.1 30 185-216 42-71 (71)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=2.1e-104 Score=806.73 Aligned_cols=505 Identities=45% Similarity=0.765 Sum_probs=440.8
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
|++||+.|.++++|.+.|++++|||||||||+|+.||.++|+|++||.+|||+.++++|+||++++.|.+.+|.+|...+
T Consensus 67 mk~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~l 146 (574)
T KOG1159|consen 67 MKKFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKEL 146 (574)
T ss_pred HHHHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCCCCCCcccccchhcCCCceeEEEecccccccccccccchhhhhhhhhhhhccccccccccccCCccee
Q 008731 81 WRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL 160 (556)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (556)
|..|....+.. .....+..+.+ .+++|++-....+ +..+....+ .. .....| .
T Consensus 147 w~~L~~i~~p~---~~~t~l~~~~~-~~~k~~~l~~~~~---~~~~d~~~v----------------~~-~~~~~~---~ 199 (574)
T KOG1159|consen 147 WSYLKGIYPPY---RPETDLIPTVQ-ITTKYSLLELGKA---SDFSDSDIV----------------LE-PQGQIP---A 199 (574)
T ss_pred HHHHHhhcCCC---CCcccCCCccc-ccchhhhhhcccc---ccCCcchhh----------------hc-cccccc---c
Confidence 99999987721 11001111122 3334433221111 000000000 00 001112 2
Q ss_pred EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCCCCccCC
Q 008731 161 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN 240 (556)
Q Consensus 161 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~~~~~ 240 (556)
+++.|++||+.+|+++|+|++|+++++.+.|+|||++.|+|.|+.+.|+++++.+||++++...+.+......-+ .+
T Consensus 200 k~~~N~rlT~~~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~~~~---~~ 276 (574)
T KOG1159|consen 200 KLVENRRLTSADHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDRSSP---LP 276 (574)
T ss_pred chhcceeecCcchhheeeEEEEecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCccccc---cc
Confidence 899999999999999999999999988999999999999999999999999999999998665555433322212 12
Q ss_pred CccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCCCCCCc
Q 008731 241 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP 320 (556)
Q Consensus 241 ~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~s~~~p 320 (556)
.++.|+|++.++++|+|+++ +|+++||..|++|++|+.||+||++++|.+|.++|++|+.++++|++|+|++|+|+++|
T Consensus 277 ~~~~p~sl~~~lk~~~D~~S-vPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp 355 (574)
T KOG1159|consen 277 LLPNPLSLLNLLKYVLDFNS-VPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLP 355 (574)
T ss_pred ccCCchhHHHHHHHhccccc-CcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCC
Confidence 36799999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCCCC-CC
Q 008731 321 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PP 399 (556)
Q Consensus 321 ~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~lp-~~ 399 (556)
+++|++.+|.++||+|||||+|..+ .++|+|++|+|+|..+..|.|+||+||++|++ |+.|.+.+.+|++..| +.
T Consensus 356 ~~yl~d~~P~IrPR~fSIas~~~~~--~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~--g~~i~~~v~~g~l~~p~~~ 431 (574)
T KOG1159|consen 356 IDYLLDLLPVIRPRAFSIASSPGAH--HLELLVAIVEYKTILKEPRRGLCSNWLASLKP--GDEIPIKVRPGTLYFPSDL 431 (574)
T ss_pred HHHHHHhccccccceeeeccCCCCC--ceeEEEEEEEEeeeccccccchhHHHHhhcCC--CCeEEEEEecCccccCCCC
Confidence 9999999999999999999999864 49999999999999999999999999999999 9999999999999999 77
Q ss_pred CCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCC-ccccHHHHHHhHhcCCCccccCCCcEEEEEecCC
Q 008731 400 SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ 478 (556)
Q Consensus 400 ~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~ 478 (556)
++|+||||+|||||||||++++|..++. .+..||||||+++ ||+|++||.+..+. .++.|||||+
T Consensus 432 ~~PlImVGPGTGvAPfRa~i~er~~q~~----~~~~lFfGCR~K~~Df~y~~eW~~~~~~----------~~~~AFSRDq 497 (574)
T KOG1159|consen 432 NKPLIMVGPGTGVAPFRALIQERIYQGD----KENVLFFGCRNKDKDFLYEDEWTELNKR----------AFHTAFSRDQ 497 (574)
T ss_pred CCCeEEEcCCCCcccHHHHHHHHHhhcc----CCceEEEecccCCccccccchhhhhhcc----------hhhhhccccc
Confidence 9999999999999999999999998554 4569999999999 99999999998766 3456999999
Q ss_pred CCccchhhhHHHcHHHHHHhHcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEecc
Q 008731 479 PQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 555 (556)
Q Consensus 479 ~~k~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (556)
++|.||||.|++.+..+|+++.+ |+.|||||+++.|+.+|+++|.+|++++++.+.+.|. |++.|++.+||+.|+|
T Consensus 498 e~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 498 EQKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred ccceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 99999999999999999999985 9999999999999999999999999999999777777 9999999999999999
No 2
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=3e-90 Score=760.63 Aligned_cols=468 Identities=29% Similarity=0.506 Sum_probs=405.1
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
|++||++|.+...+. |+|++|||||||||+|++||.+++++|++|+++||+++++++.+|.. ++++++.|.+++
T Consensus 128 a~~F~~~L~~~~~~~--L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D~~----~e~~~~~W~~~~ 201 (600)
T PRK10953 128 AVALHKFLFSKKAPK--LENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDADVE----YQAAASEWRARV 201 (600)
T ss_pred HHHHHHHHhhCcCcC--CCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeecccccccc----cHHHHHHHHHHH
Confidence 478999998766553 99999999999999999999999999999999999999999988754 678999999999
Q ss_pred HHHHhhhCCCCCCCCCCcccccchhcCCCceeEEEecccccccccccccchhhhhhhhhhhhccccccccccccCCccee
Q 008731 81 WRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL 160 (556)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (556)
|++|.+..+. .. . ++...... ... .. .. ...+..++|.
T Consensus 202 ~~~l~~~~~~--~~-~-----------~~~~~~~~-~~~----------~~----------~~-------~~~~~~~p~~ 239 (600)
T PRK10953 202 VDALKSRAPA--VA-A-----------PSQSVATG-AVN----------EI----------HT-------SPYSKEAPLT 239 (600)
T ss_pred HHHHHhhcCC--cc-c-----------cccccccc-ccc----------cc----------cc-------CCCCCCCCeE
Confidence 9999876541 10 0 00000000 000 00 00 0011223455
Q ss_pred -EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCCCCccC
Q 008731 161 -KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHK 239 (556)
Q Consensus 161 -~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~~~~ 239 (556)
+|+.|++||+.++.|+|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||+++++.|++..
T Consensus 240 a~v~~n~~Lt~~~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~------------ 307 (600)
T PRK10953 240 ASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDG------------ 307 (600)
T ss_pred EEEEEEeecCCCCCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCC------------
Confidence 9999999999999999999999998889999999999999999999999999999999998887631
Q ss_pred CCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCCCCCC
Q 008731 240 NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQM 319 (556)
Q Consensus 240 ~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~s~~~ 319 (556)
.++|++++|++|+||+. |++.||+.+|.++.++. |+++.+ +++.+..|.. .++++|+|.+|| +++
T Consensus 308 ----~~~tl~~~l~~~~dl~~--~~~~~l~~~a~~~~~~~----l~~~~~--~~~~~~~~~~--~~~~~dvL~~f~-~~~ 372 (600)
T PRK10953 308 ----KTLPLAEALQWHFELTV--NTANIVENYATLTRSET----LLPLVG--DKAALQHYAA--TTPIVDMVRFAP-AQL 372 (600)
T ss_pred ----CCCCHHHHHHHhcccCC--CcHHHHHHHHHhCCCHH----HHHHhc--CHHHHHHHhc--CCCHHHHHHhCC-CCC
Confidence 46799999999999998 57899999999998754 334443 4566667764 699999999998 689
Q ss_pred chhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeec-CCCCCC
Q 008731 320 PIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQK-GSLPRP 397 (556)
Q Consensus 320 p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~-g~F~lp 397 (556)
+++++++++|+++||+|||||+|..++++++|+|++++|.. .++.+.|+||+||. ++++ |++|.+.++. +.|++|
T Consensus 373 ~~~q~l~ll~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~~~F~lp 449 (600)
T PRK10953 373 DAEQLIGLLRPLTPRLYSIASSQAEVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEE--EGEVRVFIEHNDNFRLP 449 (600)
T ss_pred CHHHHHHhCCCCCCeeeecccCCCCCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCC--CCEEEEEeccCCcccCC
Confidence 99999999999999999999999877899999999999985 47788999999998 5999 9999999976 579999
Q ss_pred -CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCC-ccccHHHHHHhHhcCCCccccCCCcEEEEEe
Q 008731 398 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 475 (556)
Q Consensus 398 -~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 475 (556)
++.+|+||||+||||||||||+|++...+.. +++|||||||+.. ||+|++||++|.+. |.++ ++++|||
T Consensus 450 ~~~~~piImIg~GTGIAPfrsflq~r~~~~~~---~~~~LffG~R~~~~D~lY~~El~~~~~~-g~l~-----~l~~afS 520 (600)
T PRK10953 450 ANPETPVIMIGPGTGIAPFRAFMQQRAADGAP---GKNWLFFGNPHFTEDFLYQVEWQRYVKE-GLLT-----RIDLAWS 520 (600)
T ss_pred CCCCCCEEEEecCcCcHHHHHHHHHHHHcCCC---CCeEEEeeccCCccchhHHHHHHHHHHc-CCcc-----eEEEEEC
Confidence 8889999999999999999999999876554 8999999999966 99999999999998 8887 8999999
Q ss_pred cCCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEecc
Q 008731 476 RKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 555 (556)
Q Consensus 476 r~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (556)
|++.+|+||||+|.++.+++|+++.++++|||||+++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 521 Rd~~~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 521 RDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 99988999999999999999999988999999999878999999999999999999999999999999999999999999
No 3
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.2e-91 Score=757.59 Aligned_cols=520 Identities=36% Similarity=0.613 Sum_probs=433.0
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHH
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 81 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~ 81 (556)
..|++++...+.+. ...++|+|||+|++.|++||++|+.++++|+++||+++...+.+|+.. +.+++|..|++.+|
T Consensus 113 ~~f~~~l~~~~~~~--~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~--~~e~~f~~w~~~~~ 188 (645)
T KOG1158|consen 113 EAFYQSLTELKVLP--SSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDDA--GLEEDFRTWKKPLL 188 (645)
T ss_pred HHHHHHHhhccCch--hhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccccc--cchhHHHHHHHHHh
Confidence 46888998776554 445899999999999999999999999999999999999999999985 59999999999999
Q ss_pred HHHhhhCCCCCCCCCCcccccchhcCCCceeEEEecccccccccccccchhhhhhhhhhhhccccccccccccCCccee-
Q 008731 82 RRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL- 160 (556)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 160 (556)
+.+++.+..+..+.. . +.+.. ..+.......... ...... .+.. ....+....+-.+|.
T Consensus 189 ~~~~~~f~~~~~~~~--~-~~~~~---~~~~~~~~~~~~~------~~~~~~----~~~~----~~~~~~~~~~~~~~~~ 248 (645)
T KOG1158|consen 189 PELCETFSLEEDEAT--K-EDETI---RQYRTWTPNDPPF------VPQAFP----PELL----NLLSSTPFDKVFPFPA 248 (645)
T ss_pred Hhhhheeeecccccc--C-Ccccc---cccccCcCccccc------cccccC----cccc----ccccCCcchhcccchh
Confidence 999998874211100 0 00000 0000000000000 000000 0000 000000001111233
Q ss_pred EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEee--cCcccCCCCcc
Q 008731 161 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQH--KEMKNYLPDIH 238 (556)
Q Consensus 161 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~--~~~~~~~~~~~ 238 (556)
.++.+..|..+.+.+.++|++++..+++++|+||||++|+|+|+.+.|+.++++|+++++..+.+.. .......|+..
T Consensus 249 ~~~~~~~l~~~~~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (645)
T KOG1158|consen 249 LVVVNLALSTPSSDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKK 328 (645)
T ss_pred hhhHHhhccCCCCceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCcccc
Confidence 6677777877778899999999999889999999999999999999999999999999875554432 22111233333
Q ss_pred CCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCCCCC
Q 008731 239 KNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQ 318 (556)
Q Consensus 239 ~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~s~~ 318 (556)
..+++.|+|++++|++|+||++ +|++++++.||.||+|+.||++|+.|++.+|..+|.+++....+|++|||.+||+++
T Consensus 329 ~~p~~~~~t~~~~l~~~ldi~~-~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~k 407 (645)
T KOG1158|consen 329 PHPFPLPTTLRTALTHYLDITG-PPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCK 407 (645)
T ss_pred CCCCCCCCcHHHHHHHhccccC-CCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCC
Confidence 4568899999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCC-CCccCccchhhhccCCCCCceEE--EEeecCCCC
Q 008731 319 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIP--AWFQKGSLP 395 (556)
Q Consensus 319 ~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~--v~~~~g~F~ 395 (556)
+|+++|++++|.++||+|||||||..+++++++++.+++|.++.+ +.+.|+||+||+++++ |+.+. +....+.|+
T Consensus 408 pP~~~ll~~lp~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~--~~~~~~~~~~~~s~fr 485 (645)
T KOG1158|consen 408 PPLPHLLELLPRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKP--GEKVPNPVPVGKSMFR 485 (645)
T ss_pred CCHHHHHHhCccccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCC--ccccCcceeeccccee
Confidence 999999999999999999999999999999999999999999875 6778999999999999 99999 556678899
Q ss_pred CC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCC---CCCCEEEEEcccCCC-ccccHHHHHHhHhcCCCccccCCCcE
Q 008731 396 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG---PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGF 470 (556)
Q Consensus 396 lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~---~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~ 470 (556)
+| ++++||||||+||||||||||||+|.....++ ..+ +|||||||+.+ |++|++||+++.+. |.++ ++
T Consensus 486 lp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~-~~l~-----~l 558 (645)
T KOG1158|consen 486 LPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKA-GILT-----RL 558 (645)
T ss_pred cCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhc-Ccch-----hh
Confidence 99 89999999999999999999999999976543 234 89999999999 99999999999777 8887 89
Q ss_pred EEEEecCC-CCccchhhhHHHcHHHHHHhHcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 008731 471 YVAFSRKQ-PQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAG 548 (556)
Q Consensus 471 ~~a~Sr~~-~~k~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~ 548 (556)
.+||||++ +.|.||||++++.+++||++|.+ +++|||||++++|+++|.++|.+|+.+.++++.++|++++++|++++
T Consensus 559 ~~A~SReq~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~ 638 (645)
T KOG1158|consen 559 DVAFSREQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSK 638 (645)
T ss_pred eeeeeccCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhcc
Confidence 99999998 78999999999999999999965 99999999997799999999999999999999999999999999999
Q ss_pred CEEEecc
Q 008731 549 RYHVEAW 555 (556)
Q Consensus 549 Ry~~dvw 555 (556)
||++|||
T Consensus 639 Ry~~DVw 645 (645)
T KOG1158|consen 639 RYIEDVW 645 (645)
T ss_pred ccccccC
Confidence 9999999
No 4
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=1.9e-88 Score=750.09 Aligned_cols=468 Identities=32% Similarity=0.555 Sum_probs=405.9
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
|++||++|+..+.+. |+|++|||||||||+|++||.+++++|++|+++||++++|++.+|.+ +++.|++|.+++
T Consensus 125 a~~F~~~L~~~~~~~--L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~~----~e~~~~~W~~~~ 198 (597)
T TIGR01931 125 AISFHKFLHSKKAPK--LENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADLD----YDANAAEWRAGV 198 (597)
T ss_pred HHHHHHHHHhCCCcc--cCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCccC----hHHHHHHHHHHH
Confidence 468999998776443 99999999999999999999999999999999999999999998864 778999999999
Q ss_pred HHHHhhhCCCCCCCCCCcccccchhcCCCceeEEEecccccccccccccchhhhhhhhhhhhccccccccccccCCccee
Q 008731 81 WRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL 160 (556)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (556)
|++|.+..+. .. ..+.+.+...... . .. ....+.++|.
T Consensus 199 ~~~l~~~~~~--~~------------~~~~~~~~~~~~~----------------------~-----~~-~~~~~~~p~~ 236 (597)
T TIGR01931 199 LTALNEQAKG--SA------------STPSLSETPARSQ----------------------T-----AT-SVYSKQNPFR 236 (597)
T ss_pred HHHHHhhccC--cc------------CCCcceecccccc----------------------c-----cc-CCccCCCCeE
Confidence 9999776541 10 0111111100000 0 00 0111233465
Q ss_pred -EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCCCCccC
Q 008731 161 -KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHK 239 (556)
Q Consensus 161 -~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~~~~ 239 (556)
+|++|++||+.+++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++|++++++.|++..
T Consensus 237 a~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~~------------ 304 (597)
T TIGR01931 237 AEVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIGG------------ 304 (597)
T ss_pred EEEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeCC------------
Confidence 9999999999999999999999998889999999999999999999999999999999998887631
Q ss_pred CCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCCCCCC
Q 008731 240 NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQM 319 (556)
Q Consensus 240 ~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~s~~~ 319 (556)
.++|++++|++|+||+. +++.||+.+|.+++|+..++.| + +.+.+.+|+. .++++|+|.+|| +++
T Consensus 305 ----~~~tl~~~l~~~~dl~~--~~~~~l~~la~~~~~~~l~~~~----~--~~~~~~~y~~--~~~~~dvl~~fp-~~~ 369 (597)
T TIGR01931 305 ----KTIPLFEALITHFELTQ--NTKPLLKAYAELTGNKELKALI----A--DNEKLKAYIQ--NTPLIDLIRDYP-ADL 369 (597)
T ss_pred ----CCcCHHHHHHhceeCCC--CCHHHHHHHHHhcCCHHHHHHh----c--CHHHHHHHHc--CCCHHHHHHHCC-CCC
Confidence 56899999999999998 5799999999999998665433 2 5667888875 789999999999 899
Q ss_pred chhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCceEEEEeec-CCCCCC
Q 008731 320 PIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK-GSLPRP 397 (556)
Q Consensus 320 p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~-g~F~lp 397 (556)
+.+++++++|+++||+|||||+|..++++++|+|++|+|.. .++.+.|.||+||++ +++ |++|.+.++. +.|++|
T Consensus 370 ~~gq~v~ll~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~~~F~lp 446 (597)
T TIGR01931 370 DAEQLISLLRPLTPRLYSISSSQSEVGDEVHLTVGVVRYQA-HGRARLGGASGFLAERLKE--GDTVPVYIEPNDNFRLP 446 (597)
T ss_pred CHHHHHHhCcccCCceeeeccCcccCCCEEEEEEEEEEecC-CCCccccchhHHHHhhCCC--CCEEEEEEeeCCcccCC
Confidence 99999999999999999999999877899999999999975 477889999999996 999 9999999865 579999
Q ss_pred -CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCC-ccccHHHHHHhHhcCCCccccCCCcEEEEEe
Q 008731 398 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 475 (556)
Q Consensus 398 -~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 475 (556)
++.+|+||||+||||||||||+|++...+.. +++|||||||+.. |++|++||++|.+. +.++ ++++|||
T Consensus 447 ~~~~~piImIg~GTGIAPfrsflq~r~~~~~~---g~~~LffG~R~~~~D~ly~~El~~~~~~-~~l~-----~l~~afS 517 (597)
T TIGR01931 447 EDPDTPIIMIGPGTGVAPFRAFMQERAEDGAK---GKNWLFFGNPHFTTDFLYQVEWQNYLKK-GVLT-----KMDLAFS 517 (597)
T ss_pred CCCCCCEEEEcCCcCchhHHHHHHHHHHccCC---CCEEEEECCCCCCcchhHHHHHHHHHHc-CCCc-----eeEEEEe
Confidence 7789999999999999999999999876654 8899999999955 99999999999988 7775 7999999
Q ss_pred cCCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEecc
Q 008731 476 RKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 555 (556)
Q Consensus 476 r~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (556)
|++..++||||+|.++..++++++.++++|||||++..|+++|+++|.+|+.++++++.++|++|+++|+++|||++|||
T Consensus 518 Rd~~~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 518 RDQAEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred cCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 98777999999999999999999888999999995559999999999999999999999999999999999999999999
No 5
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-89 Score=741.40 Aligned_cols=469 Identities=39% Similarity=0.669 Sum_probs=420.1
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
+..||++|.....+ .|.+++||||||||++|+.||.+++.++++|.++||+++.+++.+|.+ +++.....|..++
T Consensus 114 a~~f~~~l~~~~a~--~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~---~~e~~~~~w~~~~ 188 (587)
T COG0369 114 AVAFHEFLKGKKAP--KLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ---DFEAAAAPWRDDV 188 (587)
T ss_pred hHHHHHHhcccccc--cccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc---ccchhhhHHHHHH
Confidence 46899999887544 499999999999999999999999999999999999999999999986 3789999999999
Q ss_pred HHHHhhhCCCCCCCCCCcccccchhcCCCceeEEEecccccccccccccchhhhhhhhhhhhccccccccccccCCccee
Q 008731 81 WRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL 160 (556)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (556)
++.+...++....+ +.. ...... . . ....++.++.
T Consensus 189 ~~~l~~~~~~~~~~--------------~~~--~~~~~~---------------------~------~--~~~~~~~~~~ 223 (587)
T COG0369 189 LELLKSKFPGQEAA--------------PAQ--VATSPQ---------------------S------E--SPYSKPAPSV 223 (587)
T ss_pred HHHHHhhccccccc--------------ccc--ccchhc---------------------c------c--ccccccCcce
Confidence 99998877631110 000 000000 0 0 0112233455
Q ss_pred -EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCCCCccC
Q 008731 161 -KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHK 239 (556)
Q Consensus 161 -~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~~~~ 239 (556)
.+..|++|++.+++++++||+|++++++++|+|||+++|||+|+++.|+.+|+.|||++++.|.+.
T Consensus 224 a~~~~n~~l~~~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~------------- 290 (587)
T COG0369 224 AILLENRKLTGRDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD------------- 290 (587)
T ss_pred eEeeccccCCccccCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-------------
Confidence 999999999999999999999999988999999999999999999999999999999999777431
Q ss_pred CCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCCCCCC
Q 008731 240 NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQM 319 (556)
Q Consensus 240 ~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~s~~~ 319 (556)
+.++++.++|++|+|++. .| ++|+..++.++.++..++.|+.++ ..++..|.. +++++|+|.+||++++
T Consensus 291 ---~~~~~~~~~l~~~~e~~~-~~-~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l 359 (587)
T COG0369 291 ---GETLPLVEALKSHFEFTS-AP-KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKL 359 (587)
T ss_pred ---CCcchHHHHHHHheeccc-ch-HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCC
Confidence 278899999999999999 88 999999999999999999999886 456667665 8999999999999999
Q ss_pred chhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhcc-CCCCCceEEEEeecC-CCCCC
Q 008731 320 PIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGL-DPQQGIYIPAWFQKG-SLPRP 397 (556)
Q Consensus 320 p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l-~~~~G~~v~v~~~~g-~F~lp 397 (556)
|+++|+..+|+++||+|||||++..++++++|||++|+|+++ ++.+.|+||+||+++ .. |+.|.++++.+ +|++|
T Consensus 360 ~~~~li~~l~~lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~--g~~i~v~v~~n~nf~lp 436 (587)
T COG0369 360 PAEELIDLLPPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEE--GDTIPVFVQPNKNFRLP 436 (587)
T ss_pred CHHHHHHhCccCCCeeeEeccCCCCCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcC--CCeEEEEeccCCccccC
Confidence 999999999999999999999999999999999999999998 448999999999975 56 99999999877 89999
Q ss_pred -CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCC-ccccHHHHHHhHhcCCCccccCCCcEEEEEe
Q 008731 398 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 475 (556)
Q Consensus 398 -~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 475 (556)
++.+||||||+||||||||||+|+|...+.. +++|||||||+.+ ||||++||++|.+. |.++ ++++|||
T Consensus 437 ~~~~~PiIMIG~GTGIAPFRafvq~r~~~~~~---gk~wLfFG~R~~~~DfLY~~Ewe~~~~~-G~~~-----~l~~AfS 507 (587)
T COG0369 437 EDPETPIIMIGPGTGIAPFRAFVQERAANGAE---GKNWLFFGCRHFTEDFLYQEEWEEYLKD-GVLT-----RLDLAFS 507 (587)
T ss_pred CCCCCceEEEcCCCCchhHHHHHHHHHhcccc---CceEEEecCCCCccchhhHHHHHHHHhc-CCce-----eEEEEEe
Confidence 8889999999999999999999999998877 7999999999988 99999999999998 9776 9999999
Q ss_pred cCCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEecc
Q 008731 476 RKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 555 (556)
Q Consensus 476 r~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (556)
|++.+|.||||+|++++++||+++.++++|||||+++.|+++|.++|.+|+.++++++.++|.+++++|++++||++|||
T Consensus 508 Rdq~~KiYVQd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 508 RDQEEKIYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred ecCCCCccHHHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=3.3e-78 Score=643.83 Aligned_cols=383 Identities=37% Similarity=0.691 Sum_probs=349.9
Q ss_pred cee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCC-CCceEEEeecCcccCCC
Q 008731 158 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLD-PDALITVQHKEMKNYLP 235 (556)
Q Consensus 158 ~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~-~~~~v~i~~~~~~~~~~ 235 (556)
+|. +|++|++||++ ++++++||+|++++++++|+|||+|+|+|+|+++.|+++|++||++ +++.|++.........
T Consensus 5 ~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~~~~~- 82 (416)
T cd06204 5 PFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDEPASK- 82 (416)
T ss_pred CeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCccccc-
Confidence 355 99999999998 9999999999998778999999999999999999999999999999 8998888754321111
Q ss_pred CccCCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCC
Q 008731 236 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 315 (556)
Q Consensus 236 ~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~ 315 (556)
..+++.|+|++++|++||||++ +|++.||+.||.||+|+.+|++|++|++ +|.++|.+|+.++++|++|+|.+||
T Consensus 83 ---~~~~~~~~tl~~~l~~~~Dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~~f~ 157 (416)
T cd06204 83 ---KVPFPCPTTYRTALRHYLDITA-PVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQDFP 157 (416)
T ss_pred ---CCCCCCCccHHHHHHhhEEeCC-CCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHHhCc
Confidence 1236789999999999999999 9999999999999999999999999999 9999999999999999999999999
Q ss_pred CCC---CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccC--------------
Q 008731 316 SVQ---MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD-------------- 378 (556)
Q Consensus 316 s~~---~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~-------------- 378 (556)
+++ +|+++|++.+|+++||+|||||+|..+++.++|+|++++|+++.++.+.|+||+||+++.
T Consensus 158 s~~~~~~pl~~ll~~lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~ 237 (416)
T cd06204 158 SAKPTPPPFDFLIELLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYL 237 (416)
T ss_pred ccCCCCCCHHHHHHhCccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccccccc
Confidence 999 999999999999999999999999878899999999999999888889999999999866
Q ss_pred -------CCCCceEEEEeecCCCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCC-CCCCEEEEEcccCC-Ccccc
Q 008731 379 -------PQQGIYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLY 448 (556)
Q Consensus 379 -------~~~G~~v~v~~~~g~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly 448 (556)
+ |+.|.+.++.|.|.+| +..+|+||||+|||||||+||++++......+ ..++++||||||++ .|++|
T Consensus 238 ~~~~~~~~--g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly 315 (416)
T cd06204 238 SGPRKKGG--GSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIY 315 (416)
T ss_pred ccccccCC--CCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccch
Confidence 7 9999999999999999 77899999999999999999999987643222 24789999999999 49999
Q ss_pred HHHHHHhHhcCCCccccCCCcEEEEEecCCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHHH
Q 008731 449 RELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSK 528 (556)
Q Consensus 449 ~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~~ 528 (556)
++||++|.+..+++ +++++|||++..++|||++|.++.+.+++++.++++|||||++..|+++|+++|.+|+++
T Consensus 316 ~~el~~~~~~~~~~------~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~ 389 (416)
T cd06204 316 KDELEEYAKLGGLL------ELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAE 389 (416)
T ss_pred HHHHHHHHHcCCce------EEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHH
Confidence 99999998873456 899999998877899999999988899888877899999999844999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCCCEEEecc
Q 008731 529 EGEASRDSAANWLKALQRAGRYHVEAW 555 (556)
Q Consensus 529 ~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (556)
++++++++|++|+++|+++|||++|||
T Consensus 390 ~~~~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 390 QGGMTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred hCCCCHHHHHHHHHHHHHcCCeeEecC
Confidence 999999999999999999999999999
No 7
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=1.1e-77 Score=636.89 Aligned_cols=375 Identities=32% Similarity=0.603 Sum_probs=340.5
Q ss_pred eEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCC--CCceEEEeecC--cc--cCCC
Q 008731 162 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLD--PDALITVQHKE--MK--NYLP 235 (556)
Q Consensus 162 v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~--~~~~v~i~~~~--~~--~~~~ 235 (556)
|++|++||+++++++++||+|++.++++.|+|||||+|+|+|+++.|++++++||++ +++.++++... .. ..+|
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKKKNAKVP 81 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccC
Confidence 678999999999999999999998778999999999999999999999999999999 77888886311 11 1233
Q ss_pred CccCCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCC
Q 008731 236 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 315 (556)
Q Consensus 236 ~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~ 315 (556)
.++|.++|++++|++||||++ +|+++||+.||.||+|+.+|++|.+|++.+|.++|.+|+.++++|++|+|++||
T Consensus 82 ----~~~p~~~tl~~ll~~~~Dl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~ 156 (398)
T cd06203 82 ----VHIPKVVTLRTILTWCLDIRA-IPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFP 156 (398)
T ss_pred ----CCCCCCccHHHHHHHhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCC
Confidence 235678999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccC-----CCCCceEEEEee
Q 008731 316 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD-----PQQGIYIPAWFQ 390 (556)
Q Consensus 316 s~~~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~-----~~~G~~v~v~~~ 390 (556)
++++|++++++.+|+++||+|||||+|..+++.++|+|+++.+++ .|+||+||++++ + |++|.+.++
T Consensus 157 s~~~pl~~ll~~lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~--G~~v~i~~~ 228 (398)
T cd06203 157 SCRPPLSLLIEHLPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSH--GVKVPFYLR 228 (398)
T ss_pred CCCCCHHHHHHhCccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCC--CCEEEEEEe
Confidence 999999999999999999999999999877899999999987754 699999999987 9 999999995
Q ss_pred -cCCCCCC-C-CCCCeEEEcCCCCchhhHHHHHHHHHhhC---CCCCCCEEEEEcccCCC-ccccHHHHHHhHhcCCCcc
Q 008731 391 -KGSLPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSS---SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFS 463 (556)
Q Consensus 391 -~g~F~lp-~-~~~piimIa~GTGIAPf~s~lq~~~~~~~---~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~ 463 (556)
.|.|.+| + ..+|+||||+||||||||||+|++..... .+..++++||||||+++ |++|++||++|.+. |.++
T Consensus 229 ~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~-~~~~ 307 (398)
T cd06203 229 SSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEE-GILT 307 (398)
T ss_pred cCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHc-CCCc
Confidence 6789998 5 67999999999999999999999986321 11348999999999995 99999999999987 6664
Q ss_pred ccCCCcEEEEEecCCC---CccchhhhHHHcHHHHHHhHc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHH
Q 008731 464 EAKGGGFYVAFSRKQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAAN 539 (556)
Q Consensus 464 ~~~~~~~~~a~Sr~~~---~k~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~ 539 (556)
++++||||+++ .++||||.|.++.+++++++. +++.|||||++..|+++|+++|.+|+.+++++++++|++
T Consensus 308 -----~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~ 382 (398)
T cd06203 308 -----RLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKK 382 (398)
T ss_pred -----eEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 79999999877 489999999999999999875 589999999976899999999999999999999999999
Q ss_pred HHHHHHHCCCEEEecc
Q 008731 540 WLKALQRAGRYHVEAW 555 (556)
Q Consensus 540 ~~~~l~~~~Ry~~dvw 555 (556)
|+++|+++|||++|+|
T Consensus 383 ~~~~l~~~gRy~~dvw 398 (398)
T cd06203 383 LLARLRKEDRYLEDVW 398 (398)
T ss_pred HHHHHHHcCCeeeecC
Confidence 9999999999999999
No 8
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=2.1e-77 Score=632.48 Aligned_cols=378 Identities=43% Similarity=0.737 Sum_probs=346.0
Q ss_pred EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCCCCccCC
Q 008731 161 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN 240 (556)
Q Consensus 161 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~~~~~ 240 (556)
.|++|++||+.+++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.+++++.... .. ..
T Consensus 1 ~v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~-~~----~~ 75 (382)
T cd06207 1 KVTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQQ-RG----KP 75 (382)
T ss_pred CcceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEeccccc-cc----CC
Confidence 36789999999999999999999987899999999999999999999999999999999999988753311 11 12
Q ss_pred CccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCCCCCCc
Q 008731 241 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP 320 (556)
Q Consensus 241 ~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~s~~~p 320 (556)
+++.|+|++++|++||||++ +|++.+|+.||.||+|+.+|++|.+|++.++.+.|.+| ++++++|+|.+||++++|
T Consensus 76 ~~~~~~t~~~ll~~~~dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~ 151 (382)
T cd06207 76 PFPEPISVRQLLKKFLDIFG-KPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPT 151 (382)
T ss_pred CCCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCC
Confidence 36789999999999999999 99999999999999999999999999999999999888 789999999999999999
Q ss_pred hhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCCCC-CC
Q 008731 321 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PP 399 (556)
Q Consensus 321 ~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~lp-~~ 399 (556)
++.|++.+|+++||+|||||+|..+++.++|+|+++.|.++.++.+.|+||+||+++++ |+.|.+.+|.|.|.+| +.
T Consensus 152 ~~~ll~~lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~~p~g~F~lp~~~ 229 (382)
T cd06207 152 LEQLLELCPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKV--GQRVTVFIKKSSFKLPKDP 229 (382)
T ss_pred HHHHHHhCcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCC--CCEEEEEEECCcccCCCCC
Confidence 99999999999999999999997778999999999999998788889999999999999 9999999999999999 77
Q ss_pred CCCeEEEcCCCCchhhHHHHHHHHHhhCCC-CCCCEEEEEcccCC-CccccHHHHHHhHhcCCCccccCCCcEEEEEecC
Q 008731 400 SVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK 477 (556)
Q Consensus 400 ~~piimIa~GTGIAPf~s~lq~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~ 477 (556)
.+|+||||+||||||||||+|++......+ ..++++||||||+. .|++|++||++|.+. +... ++++||||+
T Consensus 230 ~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~-~~~~-----~~~~a~Srd 303 (382)
T cd06207 230 KKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKS-GVLT-----TLGTAFSRD 303 (382)
T ss_pred CCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhC-CCCc-----eEEEEecCC
Confidence 899999999999999999999987642221 34899999999999 599999999999987 5543 899999999
Q ss_pred CCCccchhhhHHHcHHHHHHhHcCC-CEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEecc
Q 008731 478 QPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 555 (556)
Q Consensus 478 ~~~k~yVqd~l~~~~~~l~~~l~~~-~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (556)
+..++|||+.+.++.+.+++++.++ +.|||||++..|+++|+++|.+++.+++++++++|++|+++|+++|||++|||
T Consensus 304 ~~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 304 QPKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CCCceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 8889999999999988999888765 49999999833999999999999999999999999999999999999999999
No 9
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=4.9e-77 Score=632.94 Aligned_cols=384 Identities=33% Similarity=0.589 Sum_probs=340.3
Q ss_pred EeEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeeEEccCCCHHHHHHHHHHcCCCC--CceEEEeecCcccC---C
Q 008731 161 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDP--DALITVQHKEMKNY---L 234 (556)
Q Consensus 161 ~v~~~~~Lt~~~~~~~v~~i~l~~~~-~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~--~~~v~i~~~~~~~~---~ 234 (556)
+|++|++||++++.|+++||+||+++ +++.|+|||+|+|+|+|+++.|+++|++|++.+ ++.+.++....... .
T Consensus 1 ~~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T cd06202 1 KVISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGI 80 (406)
T ss_pred CcceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCccccc
Confidence 47889999999999999999999985 689999999999999999999999999999854 57777763222110 0
Q ss_pred C-CccCCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhh
Q 008731 235 P-DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLED 313 (556)
Q Consensus 235 ~-~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~ 313 (556)
. +....+++.|+|++++|++||||++ +|++.||+.||.||+|+.+|++|++|++ +.++|.+|+.++++|++|+|.+
T Consensus 81 ~~~~~~~~~~~~~tl~~ll~~~lDl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~ 157 (406)
T cd06202 81 IKTWTPHERLPPCTLRQALTRYLDITT-PPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEE 157 (406)
T ss_pred cccccccCCCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHh
Confidence 0 0001234569999999999999999 9999999999999999999999999997 8889999999999999999999
Q ss_pred CCCCCCchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCC--CCCccCccchhhhccCCCCCceEEEEeec
Q 008731 314 FPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY--KRKRTGLCSVWLAGLDPQQGIYIPAWFQK 391 (556)
Q Consensus 314 f~s~~~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~--~~~~~G~~S~~L~~l~~~~G~~v~v~~~~ 391 (556)
||++++|+++|++.+|+++||+|||||+|..+++.++|+|++++|.++. ++.+.|+||+||+++++ |+.|.+.++.
T Consensus 158 f~s~~~~~~~ll~~lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~~~~ 235 (406)
T cd06202 158 FPSLQVPASLLLTQLPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTP--GDTVPCFVRS 235 (406)
T ss_pred CCcCCCCHHHHHHhCcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCC--CCEEEEEEee
Confidence 9999999999999999999999999999987789999999999998754 33578999999999999 9999999864
Q ss_pred -CCCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhh-----CCCCCCCEEEEEcccCC-CccccHHHHHHhHhcCCCcc
Q 008731 392 -GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQS-----SSGPAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFS 463 (556)
Q Consensus 392 -g~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~-----~~~~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~ 463 (556)
+.|.+| +..+|+||||+||||||||||||++.... ..+..++++||||||++ .|++|++||++|.+. |.++
T Consensus 236 ~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~-~~~~ 314 (406)
T cd06202 236 APSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNK-GVLT 314 (406)
T ss_pred CCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHc-CCCc
Confidence 579999 77899999999999999999999986532 11134899999999999 499999999999988 6664
Q ss_pred ccCCCcEEEEEecCCC-CccchhhhHHHcHHHHHHhH-cCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008731 464 EAKGGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL 541 (556)
Q Consensus 464 ~~~~~~~~~a~Sr~~~-~k~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~ 541 (556)
++++||||++. .++||||.|.++.+.+++++ ..+++|||||++ .|+++|+++|.+|++++++++.++|++|+
T Consensus 315 -----~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~-~M~~~V~~~L~~i~~~~~~~s~~~A~~~~ 388 (406)
T cd06202 315 -----EVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGDV-TMAEDVSQTIQRILAEHGNMSAEEAEEFI 388 (406)
T ss_pred -----eEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCC-chHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 79999999864 58999999999999999988 459999999998 89999999999999999999999999999
Q ss_pred HHHHHCCCEEEeccC
Q 008731 542 KALQRAGRYHVEAWS 556 (556)
Q Consensus 542 ~~l~~~~Ry~~dvws 556 (556)
++|+++|||++|||+
T Consensus 389 ~~l~~~gRy~~dvw~ 403 (406)
T cd06202 389 LKLRDENRYHEDIFG 403 (406)
T ss_pred HHHHHcCCeEEEecc
Confidence 999999999999996
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=2.9e-75 Score=616.58 Aligned_cols=373 Identities=31% Similarity=0.562 Sum_probs=339.1
Q ss_pred EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCCCCccCC
Q 008731 161 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN 240 (556)
Q Consensus 161 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~~~~~ 240 (556)
+|+.|++||+++++++++||+|+++ ++++|+|||+|+|+|+|+++.|+++|++||+++++.|++++......+|
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~-~~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~~~~~p----- 74 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLP-DGMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGSATGLP----- 74 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECC-CCCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCCCCCCC-----
Confidence 5789999999999999999999997 5899999999999999999999999999999999999887633322333
Q ss_pred CccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCCCCCCc
Q 008731 241 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP 320 (556)
Q Consensus 241 ~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~s~~~p 320 (556)
++.|+|++++|++|+||++ +|+++||+.||.||+|+.+|++|..++ .++|.+++..+++|++|+|.+||++++|
T Consensus 75 -~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~~ 148 (384)
T cd06206 75 -LGTPISVSELLSSYVELSQ-PATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIALP 148 (384)
T ss_pred -CCCCEEHHHHHHhhccccC-CCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCCC
Confidence 6689999999999999999 999999999999999999999999885 3678888988999999999999999999
Q ss_pred hhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCC-CCccCccchhhhccCCCCCceEEEE--eecCCCCCC
Q 008731 321 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIPAW--FQKGSLPRP 397 (556)
Q Consensus 321 ~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~v~--~~~g~F~lp 397 (556)
++++++++|+++||+|||||+|..+++.++|+|++++++++.+ +.+.|+||+||+++++ |++|.+. .+.|.|.+|
T Consensus 149 ~~~~l~~~p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~i~~p~g~F~l~ 226 (384)
T cd06206 149 LATFLAMLPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRP--GDSIHVSVRPSHSAFRPP 226 (384)
T ss_pred HHHHHHhCcccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCC--CCeEEEEEecCCCccCCC
Confidence 9999999999999999999999776789999999999987654 5678999999999999 9999976 456889998
Q ss_pred -CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCC-CCCCEEEEEcccCC-CccccHHHHHHhHhcCCCccccCCCcEEEEE
Q 008731 398 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 474 (556)
Q Consensus 398 -~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 474 (556)
+..+|+||||+|||||||+||++++......+ ..++++||||||+. +|++|++||++|.+. +++ ++++++
T Consensus 227 ~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~~------~l~~a~ 299 (384)
T cd06206 227 SDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAA-GVV------SVRRAY 299 (384)
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHC-CCe------EEEEEe
Confidence 67899999999999999999999987643222 23789999999999 599999999999986 888 899999
Q ss_pred ecCCCC-ccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCC
Q 008731 475 SRKQPQ-KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEG----EASRDSAANWLKALQRAGR 549 (556)
Q Consensus 475 Sr~~~~-k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~~R 549 (556)
||++.. ++|||+.|.+..+.+++++.++++||||||+ .|+++|.++|.+++.+++ +++.++|++++++|+++||
T Consensus 300 Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~-~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gr 378 (384)
T cd06206 300 SRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGDG-RMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGR 378 (384)
T ss_pred cccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECCC-chHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCC
Confidence 998764 8999999999888888888789999999999 699999999999999999 9999999999999999999
Q ss_pred EEEecc
Q 008731 550 YHVEAW 555 (556)
Q Consensus 550 y~~dvw 555 (556)
|++|||
T Consensus 379 y~~dvw 384 (384)
T cd06206 379 YATDVF 384 (384)
T ss_pred eeeecC
Confidence 999999
No 11
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=1.1e-71 Score=583.89 Aligned_cols=354 Identities=33% Similarity=0.586 Sum_probs=320.1
Q ss_pred EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCCCCccCC
Q 008731 161 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN 240 (556)
Q Consensus 161 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~~~~~ 240 (556)
+|++|++||+++++++++||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.+++ +
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~---------~----- 66 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST---------V----- 66 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC---------C-----
Confidence 47889999999999999999999997789999999999999999999999999999999887642 1
Q ss_pred CccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCC--CCC
Q 008731 241 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP--SVQ 318 (556)
Q Consensus 241 ~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~--s~~ 318 (556)
++.++|++++|++|+||++ + .++.|+.+|+++.++++|.. ++.++|.+ .++++|+|++|| +++
T Consensus 67 -~~~~~t~~~~l~~~~dl~~-~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 67 -GGGTLPLREALIKHYEITT-L----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred -CCCcccHHHHHHhhhhhcc-C----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 3478999999999999999 4 45568899999999888875 57777654 589999999999 999
Q ss_pred CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhcc-CCCCCceEEEEeec-CCCCC
Q 008731 319 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGL-DPQQGIYIPAWFQK-GSLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l-~~~~G~~v~v~~~~-g~F~l 396 (556)
+|++++++++|+++||+|||||+|..+++.++|+|++++|.+. ++.+.|+||+||+++ ++ |++|.++++. |.|++
T Consensus 132 ~~~gq~l~l~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~--Gd~v~v~~~~~~~F~l 208 (360)
T cd06199 132 LTAEELLDLLRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKE--GDTVPVFVQPNPHFRL 208 (360)
T ss_pred CCHHHHHHhCcCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCC--CCEEEEEEecCCCcCC
Confidence 9999999999999999999999998778999999999999874 466789999999975 69 9999999865 47999
Q ss_pred C-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCC-ccccHHHHHHhHhcCCCccccCCCcEEEEE
Q 008731 397 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 474 (556)
Q Consensus 397 p-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 474 (556)
| +..+|+||||+||||||||||+|++...... ++++||||||+.+ |++|++||+++.+. +... ++++||
T Consensus 209 p~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~---~~~~L~~G~R~~~~D~~y~~el~~~~~~-~~~~-----~~~~a~ 279 (360)
T cd06199 209 PEDPDAPIIMVGPGTGIAPFRAFLQEREATGAK---GKNWLFFGERHFATDFLYQDELQQWLKD-GVLT-----RLDTAF 279 (360)
T ss_pred CCCCCCCEEEEecCcChHHHHHHHHHHHhccCC---CcEEEEEcCCCCccchhHHHHHHHHHHc-CCCe-----EEEEEE
Confidence 9 7789999999999999999999999875544 8899999999985 99999999999987 4433 899999
Q ss_pred ecCCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEec
Q 008731 475 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEA 554 (556)
Q Consensus 475 Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 554 (556)
||++..++|||+.|.++.+.+++++.++++|||||+++.|+++|+++|.+|++++++++.++|++|+++|+++|||++||
T Consensus 280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 359 (360)
T cd06199 280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDV 359 (360)
T ss_pred ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 99988889999999999999998887789999999987899999999999999999999999999999999999999999
Q ss_pred c
Q 008731 555 W 555 (556)
Q Consensus 555 w 555 (556)
|
T Consensus 360 w 360 (360)
T cd06199 360 Y 360 (360)
T ss_pred C
Confidence 9
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=6e-71 Score=595.72 Aligned_cols=360 Identities=33% Similarity=0.582 Sum_probs=321.9
Q ss_pred Cccee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCC
Q 008731 156 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYL 234 (556)
Q Consensus 156 ~~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~ 234 (556)
.++|. +|++|++||+++++++++||+|++++++++|+|||+|+|+|.|+++.|+++|++||++++..+
T Consensus 166 ~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~----------- 234 (530)
T PRK06214 166 DNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI----------- 234 (530)
T ss_pred CCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc-----------
Confidence 44566 999999999999999999999999978899999999999999999999999999999987533
Q ss_pred CCccCCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhC
Q 008731 235 PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDF 314 (556)
Q Consensus 235 ~~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f 314 (556)
.++|++++|++|+||++ +| +.||+.|+.+++++. |++|+.|++.+..+.. ....+++|+|++|
T Consensus 235 ---------~~~tlr~~L~~~~Dl~~-~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~-----~~~~~vldvL~~f 297 (530)
T PRK06214 235 ---------GGKTLREALLEDVSLGP-AP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD-----AATLDVLAALEKF 297 (530)
T ss_pred ---------CCccHHHHHHHheeccC-CC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh-----hhhCcHHHHHHhC
Confidence 46799999999999999 66 789999999988766 7888888763322221 1246899999999
Q ss_pred CCCCCchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecC-
Q 008731 315 PSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG- 392 (556)
Q Consensus 315 ~s~~~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g- 392 (556)
|++++|++++++.+|+++||+|||||+|..++++++|+|++|+|.+ .++.+.|+||+||+ ++++ |++|.++++.+
T Consensus 298 p~~~~~~~~lle~lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~--Gd~V~v~i~~~~ 374 (530)
T PRK06214 298 PGIRPDPEAFVEALDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAP--GTRVRVYVQKAH 374 (530)
T ss_pred CCCCCCHHHHHhhcCCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCC--CCEEEEEecCCC
Confidence 9999999999999999999999999999777899999999999985 46778999999997 7999 99999998543
Q ss_pred CCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCC-ccccHHHHHHhHhcCCCccccCCCcE
Q 008731 393 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGF 470 (556)
Q Consensus 393 ~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~ 470 (556)
.|++| +..+|+||||+||||||||||+|++...... ++++||||||+.+ |++|++||++|.+. |.++ ++
T Consensus 375 gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~~---g~~~LffG~R~~~~D~ly~dEL~~l~~~-g~l~-----~l 445 (530)
T PRK06214 375 GFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKAP---GRNWLFFGHQRSATDFFYEDELNGLKAA-GVLT-----RL 445 (530)
T ss_pred CCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcCC---CCeEEEEEecCChhhhHHHHHHHHHHHh-CCce-----EE
Confidence 49999 7778999999999999999999998875544 7899999998876 99999999999987 6664 79
Q ss_pred EEEEecCCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCE
Q 008731 471 YVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRY 550 (556)
Q Consensus 471 ~~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry 550 (556)
+++|||++.++.|||++|.++..++++++.++++|||||+.+.|+++|+++|.+|+.++++++.++|++|+++|+++|||
T Consensus 446 ~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~~gRY 525 (530)
T PRK06214 446 SLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRY 525 (530)
T ss_pred EEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCE
Confidence 99999998889999999999999999988789999999997679999999999999999999999999999999999999
Q ss_pred EEecc
Q 008731 551 HVEAW 555 (556)
Q Consensus 551 ~~dvw 555 (556)
++|||
T Consensus 526 ~~Dvw 530 (530)
T PRK06214 526 QADVY 530 (530)
T ss_pred EEecC
Confidence 99999
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=1.6e-46 Score=367.47 Aligned_cols=211 Identities=45% Similarity=0.772 Sum_probs=179.2
Q ss_pred cee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCCCC
Q 008731 158 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPD 236 (556)
Q Consensus 158 ~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~ 236 (556)
+|. +|++|++||+++++|+++||+|++++++++|+|||+|+|+|+|+++.|++++++||+++++.|+++........
T Consensus 8 p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~~~~~-- 85 (219)
T PF00667_consen 8 PFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQNNSV-- 85 (219)
T ss_dssp -EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESSTTSSC--
T ss_pred CEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccccccc--
Confidence 455 99999999999999999999999998899999999999999999999999999999999999999876532111
Q ss_pred ccCCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCCC
Q 008731 237 IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPS 316 (556)
Q Consensus 237 ~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~s 316 (556)
..+++.++||+++|++|+||++ +|++.||+.||.|++|+.+|++|++|++.+|.++|.+|+.++++|++|+|.+||+
T Consensus 86 --~~~~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~dil~~fps 162 (219)
T PF00667_consen 86 --KPPFPSPITLRDLLTHYLDITS-PPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDILEDFPS 162 (219)
T ss_dssp --CSSSSSSEEHHHHHHHTB-TSS-B--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHHHHHSTT
T ss_pred --ccccccceeeeeeeeeeeeccc-ccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHHHhhCcc
Confidence 2347799999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchh
Q 008731 317 VQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW 373 (556)
Q Consensus 317 ~~~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~ 373 (556)
+++|+++|++++|+++||+|||||+|..++++++|||++|+|++..++.+.|+||+|
T Consensus 163 ~~~pl~~ll~~lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 163 CKPPLEELLELLPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp BTC-HHHHHHHS-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred cCCCHHHhhhhCCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999999999999999999999999999999998999999999998
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=9.8e-40 Score=339.55 Aligned_cols=267 Identities=25% Similarity=0.440 Sum_probs=224.6
Q ss_pred CCccee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccC
Q 008731 155 KAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNY 233 (556)
Q Consensus 155 ~~~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~ 233 (556)
+.++|. +|+.|.+|+.++...+++||+|+.+ ..+.|.||.+++|.|+..
T Consensus 87 ~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~-~~~~f~~GQfv~I~~~g~----------------------------- 136 (367)
T PLN03115 87 PKEPYTGRCLLNTKITGDDAPGETWHMVFSTE-GEIPYREGQSIGVIPDGI----------------------------- 136 (367)
T ss_pred cCCCeEEEEEeecccccCCCCCceEEEEEcCC-CCCCcCCCCEEEEEcCCc-----------------------------
Confidence 344577 9999999999888889999999976 478999999999965421
Q ss_pred CCCccCCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhh
Q 008731 234 LPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLED 313 (556)
Q Consensus 234 ~~~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~ 313 (556)
|..+
T Consensus 137 -----------------------~~~g----------------------------------------------------- 140 (367)
T PLN03115 137 -----------------------DKNG----------------------------------------------------- 140 (367)
T ss_pred -----------------------CCCC-----------------------------------------------------
Confidence 0001
Q ss_pred CCCCCCchhHHHhhcCCCCccccccCCCCCC---CCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEee
Q 008731 314 FPSVQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQ 390 (556)
Q Consensus 314 f~s~~~p~~~l~~~lp~~~pR~YSIaSsp~~---~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~ 390 (556)
.+..+|+|||||+|.. .++.++|+|+.+.|.+..+....|+||+||+++++ |+.|.+.+|
T Consensus 141 ---------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~--Gd~V~v~GP 203 (367)
T PLN03115 141 ---------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKP--GAEVKITGP 203 (367)
T ss_pred ---------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCC--cCEEEEEee
Confidence 1135799999999842 24789999999989876667788999999999999 999999999
Q ss_pred cCCCC-CC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCC--CCCCEEEEEcccCCCccccHHHHHHhHhcCC-Ccccc
Q 008731 391 KGSLP-RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEA 465 (556)
Q Consensus 391 ~g~F~-lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~ 465 (556)
.|.|. +| ++.+|+||||+|||||||+||++++....... ..++++||||||+.+|++|.+||++|.+.++ ++
T Consensus 204 ~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f--- 280 (367)
T PLN03115 204 VGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENF--- 280 (367)
T ss_pred cCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCE---
Confidence 99754 56 67789999999999999999999876543211 1368999999999999999999999988654 78
Q ss_pred CCCcEEEEEecCCC----CccchhhhHHHcHHHHHHhHcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008731 466 KGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANW 540 (556)
Q Consensus 466 ~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~ 540 (556)
+++.++||++. .++|||+.|.++.+++++++.. +++|||||++ +|.++|.++|.+++...+ + +++++
T Consensus 281 ---~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp~-~M~~~V~~~l~~l~~~~g-~---~~~~~ 352 (367)
T PLN03115 281 ---RLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGLK-GMEKGIDDIMVSLAAKDG-I---DWFEY 352 (367)
T ss_pred ---EEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCCH-HHHHHHHHHHHHHHHHhC-c---cHHHH
Confidence 89999999864 4789999999999999988854 7899999997 999999999999999875 3 57889
Q ss_pred HHHHHHCCCEEEecc
Q 008731 541 LKALQRAGRYHVEAW 555 (556)
Q Consensus 541 ~~~l~~~~Ry~~dvw 555 (556)
+++|+++|||+.|+|
T Consensus 353 ~~~lk~~~r~~~e~y 367 (367)
T PLN03115 353 KKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHCCCeEEecC
Confidence 999999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=7.5e-37 Score=307.95 Aligned_cols=228 Identities=43% Similarity=0.733 Sum_probs=198.8
Q ss_pred CchhHHHhhcCC-CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecC-CCCC
Q 008731 319 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g-~F~l 396 (556)
.|+|++...+|. ..+|+|||+|+|....+.++|+|+.+.++......+.|.+|+||+++++ |+.|.+.+|.| .|.+
T Consensus 33 ~pGQ~v~l~~~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~--Gd~v~v~~p~G~~f~l 110 (267)
T cd06182 33 QPGDHLGVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQL--GAKVTVFIRPAPSFRL 110 (267)
T ss_pred CCCCEEEEecCCCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCC--CCEEEEEEecCCcccC
Confidence 477777666654 5689999999986546899999999888766556678999999999999 99999999999 8999
Q ss_pred C-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCC-CCCCCEEEEEcccCC-CccccHHHHHHhHhcCCCccccCCCcEEEE
Q 008731 397 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS-GPAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVA 473 (556)
Q Consensus 397 p-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~-~~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 473 (556)
+ +...|+||||+|||||||+||++++...... +..++++||||+|+. +|++|+++|++|.+...++ +++++
T Consensus 111 ~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~------~~~~~ 184 (267)
T cd06182 111 PKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALT------RLDVA 184 (267)
T ss_pred CCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcc------eEEEE
Confidence 8 6678999999999999999999998874111 123789999999999 7999999999999874566 89999
Q ss_pred EecCCCC-ccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCc-cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEE
Q 008731 474 FSRKQPQ-KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 551 (556)
Q Consensus 474 ~Sr~~~~-k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~-m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~ 551 (556)
+||++.. ++||++.+.+..+.+++.+.+++.||||||+ . |++.|.++|.+++.++++++.++|+.++++|++.|||+
T Consensus 185 ~S~~~~~~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp~-~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (267)
T cd06182 185 FSREQAEPKVYVQDKLKEHAEELRRLLNEGAHIYVCGDA-KSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYV 263 (267)
T ss_pred EccCCCCCceehHHHHHHhHHHHHHHHhcCCEEEEECCc-ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeE
Confidence 9997663 7899999988777777777777799999999 7 99999999999999999999999999999999999999
Q ss_pred Eecc
Q 008731 552 VEAW 555 (556)
Q Consensus 552 ~dvw 555 (556)
+|+|
T Consensus 264 ~~~~ 267 (267)
T cd06182 264 EDVW 267 (267)
T ss_pred EecC
Confidence 9999
No 16
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=1.3e-34 Score=295.11 Aligned_cols=188 Identities=32% Similarity=0.539 Sum_probs=162.0
Q ss_pred ccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEe-ecCCCCCCCCCCCeEEEcCCCC
Q 008731 333 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF-QKGSLPRPPPSVPLILIGPGTG 411 (556)
Q Consensus 333 pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~-~~g~F~lp~~~~piimIa~GTG 411 (556)
+|+|||+|+|. .+.++|+|+. .+.|.+|+||+++++ |++|.+.+ +.|.|.+++..+|+||||+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~---------~~~G~~S~~L~~l~~--Gd~v~v~~~~~g~F~~~~~~~~lvlIAgGtG 166 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRK---------HPGGLCSGYLHGLKP--GDTIKAFIRPNPSFRPAKGAAPVILIGAGTG 166 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEe---------CCCccchhhHhhCCC--cCEEEEEeccCCCccCCCCCCCEEEEecCcC
Confidence 69999999984 3789999843 457999999999999 99999986 5778988766789999999999
Q ss_pred chhhHHHHHHHHHhhCCCCCCCEEEEEcccCCC-ccccHHHHHHhHhcCCCccccCCCcEEEEEecCCCCccchhhhHHH
Q 008731 412 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLE 490 (556)
Q Consensus 412 IAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~ 490 (556)
||||+||++++.. . .+++||||+|+.+ |++|++||++|.+.+.++ +++.++||++. ++|||+.+..
T Consensus 167 IaP~~s~l~~~~~---~---~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~------~~~~~~s~~~~-~g~v~~~l~~ 233 (289)
T cd06201 167 IAPLAGFIRANAA---R---RPMHLYWGGRDPASDFLYEDELDQYLADGRLT------QLHTAFSRTPD-GAYVQDRLRA 233 (289)
T ss_pred HHHHHHHHHhhhc---c---CCEEEEEEecCcccchHHHHHHHHHHHcCCCc------eEEEEECCCCC-cccchhHHHH
Confidence 9999999998631 2 6799999999996 999999999998874455 78889999754 7899999988
Q ss_pred cHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEecc
Q 008731 491 QSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 555 (556)
Q Consensus 491 ~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (556)
..+.+...+.+++.||+|||+ .|+++|.+.|.+|+++++ + -+.+++++|||.+|+|
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp~-~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGSR-AMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECCH-HHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 777777777778999999998 999999999999998754 2 2888999999999998
No 17
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=8.9e-35 Score=296.12 Aligned_cols=223 Identities=29% Similarity=0.463 Sum_probs=183.4
Q ss_pred CchhHHHhhcCC--------CCccccccCCCCCC---CCCEEEEEEEEEEeeCCCC-CCccCccchhhhccCCCCCceEE
Q 008731 319 MPIDWLVQLVPP--------LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIP 386 (556)
Q Consensus 319 ~p~~~l~~~lp~--------~~pR~YSIaSsp~~---~~~~i~l~v~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~ 386 (556)
.|+|++...+|. ...|+|||||+|.. +++.++|+|+++.+.++.. ..+.|++|+||+++++ |++|.
T Consensus 42 ~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~ 119 (286)
T cd06208 42 LEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKP--GDDVQ 119 (286)
T ss_pred cCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCC--CCEEE
Confidence 356665444442 24799999999853 2469999999887755432 4556999999999999 99999
Q ss_pred EEeecCCCCC-C-CCCCCeEEEcCCCCchhhHHHHHHHHHhhC--CCCCCCEEEEEcccCCCccccHHHHHHhHhcCC-C
Q 008731 387 AWFQKGSLPR-P-PPSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-V 461 (556)
Q Consensus 387 v~~~~g~F~l-p-~~~~piimIa~GTGIAPf~s~lq~~~~~~~--~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~ 461 (556)
+.+|.|.|.+ | +...|+||||+|||||||+||++++..... .+..++++||||+|+.+|++|+++|+++.+.++ +
T Consensus 120 v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~ 199 (286)
T cd06208 120 ITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDN 199 (286)
T ss_pred EEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCc
Confidence 9999998765 4 456799999999999999999999886521 012368999999999999999999999998644 6
Q ss_pred ccccCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHhHcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHH
Q 008731 462 FSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDS 536 (556)
Q Consensus 462 l~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~ 536 (556)
+ ++++++||++. .++||++.+.+....+++.+.. +..||+|||+ .|+++|.++|.+++.. ..+
T Consensus 200 ~------~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp~-~m~~~v~~~L~~~~~~-----~~~ 267 (286)
T cd06208 200 F------RIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGLK-GMEPGVDDALTSVAEG-----GLA 267 (286)
T ss_pred E------EEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCCc-hHHHHHHHHHHHHHhc-----cHH
Confidence 7 89999999754 4789999999877777777764 5699999998 9999999999999972 357
Q ss_pred HHHHHHHHHHCCCEEEecc
Q 008731 537 AANWLKALQRAGRYHVEAW 555 (556)
Q Consensus 537 a~~~~~~l~~~~Ry~~dvw 555 (556)
|++++.+|+++|||+.|+|
T Consensus 268 ~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 268 WEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHHHHHHHcCCeEEecC
Confidence 8999999999999999999
No 18
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=9.8e-35 Score=298.46 Aligned_cols=224 Identities=28% Similarity=0.423 Sum_probs=181.7
Q ss_pred CchhHHHhhcCC---------CCccccccCCCCCCC---CCEEEEEEEEEEeeCCCCCC----ccCccchhhhccCCCCC
Q 008731 319 MPIDWLVQLVPP---------LKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRK----RTGLCSVWLAGLDPQQG 382 (556)
Q Consensus 319 ~p~~~l~~~lp~---------~~pR~YSIaSsp~~~---~~~i~l~v~~v~~~~~~~~~----~~G~~S~~L~~l~~~~G 382 (556)
.|+|++...+|. ...|+|||||+|... +.+++|+|+++.|.++.... +.|.+|+||+++++ |
T Consensus 58 ~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~--G 135 (307)
T PLN03116 58 WEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKP--G 135 (307)
T ss_pred ecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCC--C
Confidence 456665554442 247999999999432 23899999988766553222 68999999999999 9
Q ss_pred ceEEEEeecCCCCC-C--CCCCCeEEEcCCCCchhhHHHHHHHHHhhC--CCCCCCEEEEEcccCCCccccHHHHHHhHh
Q 008731 383 IYIPAWFQKGSLPR-P--PPSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNEDDFLYRELWLSHSL 457 (556)
Q Consensus 383 ~~v~v~~~~g~F~l-p--~~~~piimIa~GTGIAPf~s~lq~~~~~~~--~~~~~~~~L~~G~R~~~d~ly~~el~~~~~ 457 (556)
+.|.+.+|.|.|.+ | +...|+||||+|||||||+||++++..... .+..++++||||+|+.+|++|.+||++|.+
T Consensus 136 d~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~ 215 (307)
T PLN03116 136 DKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLK 215 (307)
T ss_pred CEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHH
Confidence 99999999999876 4 345799999999999999999998876432 112268999999999999999999999988
Q ss_pred cCC-CccccCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCC
Q 008731 458 NDG-VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEA 532 (556)
Q Consensus 458 ~~g-~l~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~ 532 (556)
.++ ++ +++.++||++. .++||++.|.+..+.++..+.+++.+|+|||+ .|++++.++|.+++...+ +
T Consensus 216 ~~~~~~------~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp~-~mv~~v~~~L~~~~~~~g-~ 287 (307)
T PLN03116 216 DYPDNF------RYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLK-GMMPGIQDTLKRVAEERG-E 287 (307)
T ss_pred hCCCcE------EEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCCH-HHHHHHHHHHHHHHHHcC-c
Confidence 754 68 89999999764 36799999988766666656568899999998 999999999999887754 4
Q ss_pred CHHHHHHHHHHHHHCCCEEEecc
Q 008731 533 SRDSAANWLKALQRAGRYHVEAW 555 (556)
Q Consensus 533 ~~~~a~~~~~~l~~~~Ry~~dvw 555 (556)
+|++.++.|+++|||++|+|
T Consensus 288 ---~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 288 ---SWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred ---cHHHHHHHHHHcCceEEecC
Confidence 35689999999999999999
No 19
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=6.6e-35 Score=290.52 Aligned_cols=209 Identities=30% Similarity=0.405 Sum_probs=175.2
Q ss_pred CchhHHHhhcCC-CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCceEEEEeec-CCCC
Q 008731 319 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK-GSLP 395 (556)
Q Consensus 319 ~p~~~l~~~lp~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~-g~F~ 395 (556)
-|+|++...++. ..+|+|||||+|. ++.++|+|+.+... ..+.|.+|+||++ +++ |++|.+.+|. |.|.
T Consensus 33 ~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~~----~~~~G~~S~~L~~~~~~--Gd~v~i~gp~gg~F~ 104 (245)
T cd06200 33 QAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRHA----DGGLGLGSGWLTRHAPI--GASVALRLRENPGFH 104 (245)
T ss_pred cCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEeccC----CCCCeeechhhhhCCCC--CCEEEEEecCCCccc
Confidence 367776555553 6789999999985 47899999765321 1235999999986 589 9999999975 5788
Q ss_pred CCCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCC-ccccHHHHHHhHhcCCCccccCCCcEEEEE
Q 008731 396 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 474 (556)
Q Consensus 396 lp~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 474 (556)
+|+..+|+||||+|||||||+||++++..... ++++||||+|+.+ |++|.+||++|.+.+.++ ++++++
T Consensus 105 ~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~----~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~------~~~~~~ 174 (245)
T cd06200 105 LPDDGRPLILIGNGTGLAGLRSHLRARARAGR----HRNWLLFGERQAAHDFFCREELEAWQAAGHLA------RLDLAF 174 (245)
T ss_pred CCCCCCCEEEEecCcChHHHHHHHHHHHhccC----CCeEEEEecCCccccHhHHHHHHHHHHCCCcc------eEEEEE
Confidence 87656899999999999999999999876532 5799999999986 999999999998874555 889999
Q ss_pred ecCCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEec
Q 008731 475 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEA 554 (556)
Q Consensus 475 Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 554 (556)
|+++..++||++.+.+..+.+++++..+++||+|||+++|+++|++.|.++++. +.+++|+++|||++|+
T Consensus 175 s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l~~~~~~----------~~~~~~~~~~r~~~d~ 244 (245)
T cd06200 175 SRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVLDEILGE----------EAVEALLAAGRYRRDV 244 (245)
T ss_pred ccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHHHHHHHH----------HHHHHHHHCCCeEEec
Confidence 998777899999999887777776666889999999768999999999999975 2488999999999999
Q ss_pred c
Q 008731 555 W 555 (556)
Q Consensus 555 w 555 (556)
|
T Consensus 245 ~ 245 (245)
T cd06200 245 Y 245 (245)
T ss_pred C
Confidence 9
No 20
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=1.3e-33 Score=300.10 Aligned_cols=221 Identities=26% Similarity=0.402 Sum_probs=180.7
Q ss_pred CchhHHHhhcCC-------CCccccccCCCCCCC---CCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEE
Q 008731 319 MPIDWLVQLVPP-------LKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW 388 (556)
Q Consensus 319 ~p~~~l~~~lp~-------~~pR~YSIaSsp~~~---~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~ 388 (556)
.|+|++...+|. ...|+|||+|+|... .+.++|+|+++.+ +..+..+.|.+|+||+++++ |++|.+.
T Consensus 177 ~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~--Gd~v~v~ 253 (411)
T TIGR03224 177 LEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKK--GDKVQVI 253 (411)
T ss_pred cCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCC--cCEEEEE
Confidence 567766555553 357999999987321 2579999988764 33455668999999999999 9999999
Q ss_pred eecCC-CCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccC
Q 008731 389 FQKGS-LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAK 466 (556)
Q Consensus 389 ~~~g~-F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~ 466 (556)
+|.|. |.+| ...+|+||||+|||||||+||++++......+..++++||||+|+.+|++|.+||+++.+. .+
T Consensus 254 GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~--~~---- 327 (411)
T TIGR03224 254 GPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKD--FI---- 327 (411)
T ss_pred eccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcCCCCCEEEEEecCccccchHHHHHHHHHhc--Cc----
Confidence 99997 6677 5568999999999999999999998764221123789999999999999999999999865 34
Q ss_pred CCcEEEEEecCCC-CccchhhhHHHcHHHHHHhHcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008731 467 GGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKAL 544 (556)
Q Consensus 467 ~~~~~~a~Sr~~~-~k~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l 544 (556)
++++++||++. .++|||+.+.+...++.+++.. ++.||+|||+ .|.++|.++|.++....+ +. .++++++|
T Consensus 328 --~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp~-~M~~~v~~~L~~~~~~~~-~~---~~~~~~~l 400 (411)
T TIGR03224 328 --DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGLK-GMEEGVLDAFRDVCATNG-LS---WETLEPRL 400 (411)
T ss_pred --eEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECCH-HHHHHHHHHHHHHHHHcC-cC---HHHHHHHH
Confidence 67789999654 5899999999888888877754 6899999998 999999999999997653 33 46799999
Q ss_pred HHCCCEEEecc
Q 008731 545 QRAGRYHVEAW 555 (556)
Q Consensus 545 ~~~~Ry~~dvw 555 (556)
+++|||+.|+|
T Consensus 401 ~~~~r~~~e~~ 411 (411)
T TIGR03224 401 RAEGRLHLETY 411 (411)
T ss_pred HHCCCeEEecC
Confidence 99999999999
No 21
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.93 E-value=5.5e-26 Score=222.36 Aligned_cols=184 Identities=27% Similarity=0.410 Sum_probs=146.4
Q ss_pred CchhHHHhhcCC---CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCC
Q 008731 319 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 395 (556)
Q Consensus 319 ~p~~~l~~~lp~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~ 395 (556)
.|+|++...+|. ...|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.++++ |++|.+.+|.|.|.
T Consensus 24 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~---------~~G~~s~~l~~~~~--G~~v~i~gP~G~~~ 91 (223)
T cd00322 24 KPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIV---------PGGPFSAWLHDLKP--GDEVEVSGPGGDFF 91 (223)
T ss_pred CCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEe---------CCCchhhHHhcCCC--CCEEEEECCCcccc
Confidence 478887777774 67899999999853 47899999653 46999999999999 99999999999987
Q ss_pred CC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEE
Q 008731 396 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 474 (556)
Q Consensus 396 lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 474 (556)
++ ....++||||+|||||||+++++++...... .+++|+||+|+.+|++|++||+++.+.+.++ ++++++
T Consensus 92 ~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~ 162 (223)
T cd00322 92 LPLEESGPVVLIAGGIGITPFRSMLRHLAADKPG---GEITLLYGARTPADLLFLDELEELAKEGPNF------RLVLAL 162 (223)
T ss_pred cCcccCCcEEEEecCCchhHHHHHHHHHHhhCCC---CcEEEEEecCCHHHhhHHHHHHHHHHhCCCe------EEEEEe
Confidence 66 6778999999999999999999999876433 7899999999999999999999999865677 889999
Q ss_pred ecCCCCccchhhhHHHcHHHHHH-hH-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 475 SRKQPQKVYVQHKMLEQSQRIWN-LL-LSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 475 Sr~~~~k~yVqd~l~~~~~~l~~-~l-~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+|++....+.+..+... ..+.. .. .++..+|+|||+ .|++.+++.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~yvCGp~-~m~~~~~~~L~~~ 213 (223)
T cd00322 163 SRESEAKLGPGGRIDRE-AEILALLPDDSGALVYICGPP-AMAKAVREALVSL 213 (223)
T ss_pred cCCCCCCCcccceeeHH-HHHHhhcccccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 98765433333222111 11111 11 247899999998 8999999888664
No 22
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.93 E-value=5.7e-26 Score=223.20 Aligned_cols=180 Identities=26% Similarity=0.361 Sum_probs=148.1
Q ss_pred CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCCCCCC
Q 008731 319 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPRP 397 (556)
Q Consensus 319 ~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~lp 397 (556)
.|+|++...+|....|+|||+|.|.. .+.++|+|.. ...|.+|++|. .+++ |++|.+.+|.|.|.++
T Consensus 27 ~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~~ 94 (224)
T cd06189 27 LAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRA---------VPGGSFSDYVFEELKE--NGLVRIEGPLGDFFLR 94 (224)
T ss_pred CCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEe---------cCCCccHHHHHHhccC--CCEEEEecCCccEEec
Confidence 57888777777777999999999853 4789999854 34699999987 5999 9999999999999887
Q ss_pred -CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 398 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 398 -~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
....++||||+|||||||++++++....... .+++|+||+|+.+|++|++||+++.+.+.++ +++.++|+
T Consensus 95 ~~~~~~ivliagG~GiaP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s~ 165 (224)
T cd06189 95 EDSDRPLILIAGGTGFAPIKSILEHLLAQGSK---RPIHLYWGARTEEDLYLDELLEAWAEAHPNF------TYVPVLSE 165 (224)
T ss_pred cCCCCCEEEEecCcCHHHHHHHHHHHHhcCCC---CCEEEEEecCChhhccCHHHHHHHHHhCCCe------EEEEEeCC
Confidence 5578999999999999999999998876543 6899999999999999999999998865778 88888998
Q ss_pred CCC----CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 477 KQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 477 ~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+++ .++|+++.+.+.... ..+..+|+|||+ .|++++++.|.+.
T Consensus 166 ~~~~~~g~~g~v~~~l~~~~~~-----~~~~~v~vCGp~-~m~~~~~~~l~~~ 212 (224)
T cd06189 166 PEEGWQGRTGLVHEAVLEDFPD-----LSDFDVYACGSP-EMVYAARDDFVEK 212 (224)
T ss_pred CCcCCccccccHHHHHHhhccC-----ccccEEEEECCH-HHHHHHHHHHHHc
Confidence 643 467888766543110 136889999998 8999998888653
No 23
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.93 E-value=4e-26 Score=227.79 Aligned_cols=184 Identities=16% Similarity=0.179 Sum_probs=141.9
Q ss_pred CchhHHHhhcC--C-CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeec-CCC
Q 008731 319 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQK-GSL 394 (556)
Q Consensus 319 ~p~~~l~~~lp--~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~-g~F 394 (556)
.|+|++...++ . ...|+|||+|+|.. +.++|+|+. .+.|.+|+||+++++ |++|.+.+|. |.|
T Consensus 32 ~pGQfv~l~~~~~g~~~~R~ySias~p~~--~~l~~~ik~---------~~~G~~S~~L~~l~~--Gd~v~i~gp~~g~f 98 (248)
T PRK10926 32 TAGQFTKLGLEIDGERVQRAYSYVNAPDN--PDLEFYLVT---------VPEGKLSPRLAALKP--GDEVQVVSEAAGFF 98 (248)
T ss_pred CCCCEEEEEEecCCcEEEeeecccCCCCC--CeEEEEEEE---------eCCCCcChHHHhCCC--CCEEEEecCCCcce
Confidence 47777655553 2 24699999999853 578888854 357999999999999 9999999976 556
Q ss_pred CCC-C-CCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcC-CCccccCCCcEE
Q 008731 395 PRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGFY 471 (556)
Q Consensus 395 ~lp-~-~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~~~~~~~~~ 471 (556)
.++ . ...|+||||+|||||||+||++++...+.. .+++|+||+|+.+|++|++||+++.+.+ +++ +++
T Consensus 99 ~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~------~v~ 169 (248)
T PRK10926 99 VLDEVPDCETLWMLATGTAIGPYLSILQEGKDLERF---KNLVLVHAARYAADLSYLPLMQELEQRYEGKL------RIQ 169 (248)
T ss_pred EccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCCC---CcEEEEEeCCcHHHHHHHHHHHHHHHhCcCCE------EEE
Confidence 665 3 347999999999999999999998654443 6899999999999999999999998764 368 899
Q ss_pred EEEecCCC---CccchhhhHHHc-HHHHHHh-H-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 472 VAFSRKQP---QKVYVQHKMLEQ-SQRIWNL-L-LSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 472 ~a~Sr~~~---~k~yVqd~l~~~-~~~l~~~-l-~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
.++||++. .+++|++.+.+. ....... + .++..+|+|||+ .|++++.+.|.+.
T Consensus 170 ~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~-~Mv~~~~~~l~~~ 228 (248)
T PRK10926 170 TVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNP-QMVRDTQQLLKET 228 (248)
T ss_pred EEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCH-HHHHHHHHHHHHh
Confidence 99998653 256777766432 1111111 1 236889999998 9999999887653
No 24
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.93 E-value=1.8e-25 Score=227.43 Aligned_cols=179 Identities=21% Similarity=0.336 Sum_probs=140.3
Q ss_pred ccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCCCCCCCCCeEEEcCCCCc
Q 008731 333 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGC 412 (556)
Q Consensus 333 pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~lp~~~~piimIa~GTGI 412 (556)
.|+|||+|+|.. .+.++|+|++........+...|.+|+||+++++ |++|.+.+|.|.|.+++...|+||||+||||
T Consensus 86 ~R~ySias~p~~-~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~l~~~~~~~vlIAgGtGI 162 (283)
T cd06188 86 SRAYSLANYPAE-EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKP--GDKVTASGPFGEFFIKDTDREMVFIGGGAGM 162 (283)
T ss_pred ccccCcCCCCCC-CCeEEEEEEEeccCCccCCCCCceehhHHhcCCC--CCEEEEECccccccccCCCCcEEEEEecccH
Confidence 499999999853 4789999976533221113457999999999999 9999999999999887556899999999999
Q ss_pred hhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEecCC--C----Cccchhh
Q 008731 413 APFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--P----QKVYVQH 486 (556)
Q Consensus 413 APf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~--~----~k~yVqd 486 (556)
|||+||++++...... ..+++||||+|+.+|++|.+||+++.+.+.++ ++++++|+++ + .++||++
T Consensus 163 tP~~s~l~~~~~~~~~--~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~~~~G~v~~ 234 (283)
T cd06188 163 APLRSHIFHLLKTLKS--KRKISFWYGARSLKELFYQEEFEALEKEFPNF------KYHPVLSEPQPEDNWDGYTGFIHQ 234 (283)
T ss_pred hHHHHHHHHHHhcCCC--CceEEEEEecCCHHHhhHHHHHHHHHHHCCCe------EEEEEECCCCccCCCCCcceeecH
Confidence 9999999997764321 16799999999999999999999998775677 7888888754 1 3578887
Q ss_pred hHHHcHHHHHHhH-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 487 KMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 487 ~l~~~~~~l~~~l-~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
.+.+.. +.... ..+..+|+|||+ .|++++.+.|.+.
T Consensus 235 ~~~~~~--~~~~~~~~~~~vyiCGP~-~m~~~~~~~l~~~ 271 (283)
T cd06188 235 VLLENY--LKKHPAPEDIEFYLCGPP-PMNSAVIKMLDDL 271 (283)
T ss_pred HHHHHH--hccCCCCCCeEEEEECCH-HHHHHHHHHHHHc
Confidence 665431 10111 136789999998 9999999888764
No 25
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.93 E-value=1.9e-25 Score=221.58 Aligned_cols=181 Identities=20% Similarity=0.321 Sum_probs=146.7
Q ss_pred CchhHHHhhcCCC-CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCCCCC
Q 008731 319 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~l 396 (556)
.|+|++...+|.. ..|+|||+|.+.. .+.++|+|.+ ...|.+|+||. .+++ |++|.+.+|.|.|.+
T Consensus 37 ~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~ 104 (238)
T cd06211 37 QAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRL---------VPGGIATTYVHKQLKE--GDELEISGPYGDFFV 104 (238)
T ss_pred CCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEE---------CCCCcchhhHhhcCCC--CCEEEEECCccceEe
Confidence 4778777777765 6899999999853 4789999854 35699999997 7999 999999999999988
Q ss_pred C-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEe
Q 008731 397 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 475 (556)
Q Consensus 397 p-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 475 (556)
+ ...+|+||||+|||||||++++++....+.. .+++|+||+|+.+|++|.+||+++.+.+.++ +++.++|
T Consensus 105 ~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s 175 (238)
T cd06211 105 RDSDQRPIIFIAGGSGLSSPRSMILDLLERGDT---RKITLFFGARTRAELYYLDEFEALEKDHPNF------KYVPALS 175 (238)
T ss_pred cCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCCC---CcEEEEEecCChhhhccHHHHHHHHHhCCCe------EEEEEEC
Confidence 7 5558999999999999999999998876543 6899999999999999999999998765677 7888899
Q ss_pred cCCC------CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 476 RKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 476 r~~~------~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
|+.. .++|+++.+.+.... -.++..+|+|||+ .|.+++.+.|.+.
T Consensus 176 ~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyvCGp~-~m~~~~~~~L~~~ 226 (238)
T cd06211 176 REPPESNWKGFTGFVHDAAKKHFKN----DFRGHKAYLCGPP-PMIDACIKTLMQG 226 (238)
T ss_pred CCCCCcCcccccCcHHHHHHHhccc----ccccCEEEEECCH-HHHHHHHHHHHHc
Confidence 8642 356777765442110 0136789999998 9999999888764
No 26
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.93 E-value=1.4e-25 Score=221.43 Aligned_cols=183 Identities=19% Similarity=0.192 Sum_probs=145.9
Q ss_pred CchhHHHhhcCCC-CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCceEEEEeecCCCCC
Q 008731 319 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~l 396 (556)
.|+|++...+|.. .+|+|||+|.|.. .+.++|+|+. ...|.+|.||++ +++ |++|.+.+|.|.|.+
T Consensus 25 ~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~---------~~~G~~s~~l~~~~~~--g~~v~v~gP~G~~~~ 92 (232)
T cd06190 25 LPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKR---------KPGGAASNALFDNLEP--GDELELDGPYGLAYL 92 (232)
T ss_pred CCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEE---------cCCCcchHHHhhcCCC--CCEEEEECCccccee
Confidence 5788888878877 7899999999854 5789999953 356999999985 799 999999999999887
Q ss_pred C-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEe
Q 008731 397 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 475 (556)
Q Consensus 397 p-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 475 (556)
+ +...++||||+|||||||++++++...... +...+++|+||+|+.+|++|++||+++.+.+.++ ++++++|
T Consensus 93 ~~~~~~~illIagG~GiaP~~~~l~~~~~~~~-~~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~s 165 (232)
T cd06190 93 RPDEDRDIVCIAGGSGLAPMLSILRGAARSPY-LSDRPVDLFYGGRTPSDLCALDELSALVALGARL------RVTPAVS 165 (232)
T ss_pred cCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc-CCCCeEEEEEeecCHHHHhhHHHHHHHHHhCCCE------EEEEEeC
Confidence 6 556899999999999999999999887521 0127899999999999999999999998874567 7888888
Q ss_pred cCCC--------CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 476 RKQP--------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 476 r~~~--------~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+++. .++|+++.+.+.... ...+..||+|||+ .|.+++.+.|.+.
T Consensus 166 ~~~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGp~-~m~~~v~~~l~~~ 218 (232)
T cd06190 166 DAGSGSAAGWDGPTGFVHEVVEATLGD----RLAEFEFYFAGPP-PMVDAVQRMLMIE 218 (232)
T ss_pred CCCCCcCCCccCCcCcHHHHHHhhccC----CccccEEEEECCH-HHHHHHHHHHHHh
Confidence 7643 245777665443111 1237899999998 8998888877664
No 27
>PRK08051 fre FMN reductase; Validated
Probab=99.93 E-value=1.4e-25 Score=221.74 Aligned_cols=180 Identities=21% Similarity=0.270 Sum_probs=143.9
Q ss_pred CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchh-hhccCCCCCceEEEEeecCCCCCC
Q 008731 319 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW-LAGLDPQQGIYIPAWFQKGSLPRP 397 (556)
Q Consensus 319 ~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~-L~~l~~~~G~~v~v~~~~g~F~lp 397 (556)
.|+|++...+|....|+|||+|.|.. .+.++|+|+.+ ..|..|.+ +.++++ |++|.+.+|.|.|.++
T Consensus 31 ~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~---------~~~~~~~~~~~~l~~--G~~v~v~gP~G~~~~~ 98 (232)
T PRK08051 31 RAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGAS---------ELNLYAMAVMERILK--DGEIEVDIPHGDAWLR 98 (232)
T ss_pred CCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEc---------CCCcchHHHHHHcCC--CCEEEEEcCCCceEcc
Confidence 57888777777777899999999853 47899998542 33544545 468999 9999999999998876
Q ss_pred -CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 398 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 398 -~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
+...|+||||+||||||+++|+++....... .+++|+||+|+.+|++|.+||+++.+.++++ +++.++|+
T Consensus 99 ~~~~~~~vliagG~GiaP~~~~l~~~~~~~~~---~~v~l~~g~r~~~~~~~~~el~~l~~~~~~~------~~~~~~~~ 169 (232)
T PRK08051 99 EESERPLLLIAGGTGFSYARSILLTALAQGPN---RPITLYWGGREEDHLYDLDELEALALKHPNL------HFVPVVEQ 169 (232)
T ss_pred CCCCCcEEEEecCcCcchHHHHHHHHHHhCCC---CcEEEEEEeccHHHhhhhHHHHHHHHHCCCc------EEEEEeCC
Confidence 5668999999999999999999999876544 6899999999999999999999999876677 88888887
Q ss_pred CCC----CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHH-HHH
Q 008731 477 KQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF-EEI 525 (556)
Q Consensus 477 ~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L-~~i 525 (556)
+++ .++||++.+.+.... ..+..+|+|||+ +|+++|.+.| .+.
T Consensus 170 ~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyicGp~-~m~~~v~~~l~~~~ 217 (232)
T PRK08051 170 PEEGWQGKTGTVLTAVMQDFGS-----LAEYDIYIAGRF-EMAKIARELFCRER 217 (232)
T ss_pred CCCCcccceeeehHHHHhhccC-----cccCEEEEECCH-HHHHHHHHHHHHHc
Confidence 643 367777765432111 135789999998 9999999877 553
No 28
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.93 E-value=2.2e-25 Score=219.63 Aligned_cols=177 Identities=23% Similarity=0.352 Sum_probs=145.8
Q ss_pred CchhHHHhhcCCC-CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCceEEEEeecCCCCC
Q 008731 319 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~l 396 (556)
.|+|++...+|.. ..|+|||+|.|.. +.++|+|+. ...|.+|+||.+ +++ |+.|.+.+|.|.|.+
T Consensus 32 ~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~---------~~~G~~s~~l~~~l~~--G~~v~v~gP~G~~~~ 98 (228)
T cd06209 32 LPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRL---------LPGGAMSSYLRDRAQP--GDRLTLTGPLGSFYL 98 (228)
T ss_pred CCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEE---------cCCCcchhhHHhccCC--CCEEEEECCccccee
Confidence 4677776666654 4799999999864 789999853 357999999987 999 999999999999877
Q ss_pred CCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 397 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 397 p~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
+....|++|||+||||||+++++++....... ++++|+||+|+.+|++|.++|+++.+.++++ ++++++|+
T Consensus 99 ~~~~~~~vlia~GtGIaP~~~ll~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s~ 169 (228)
T cd06209 99 REVKRPLLMLAGGTGLAPFLSMLDVLAEDGSA---HPVHLVYGVTRDADLVELDRLEALAERLPGF------SFRTVVAD 169 (228)
T ss_pred cCCCCeEEEEEcccCHhHHHHHHHHHHhcCCC---CcEEEEEecCCHHHhccHHHHHHHHHhCCCe------EEEEEEcC
Confidence 64458999999999999999999998876543 6899999999999999999999998776778 88889998
Q ss_pred CCC---CccchhhhHHHcHHHHHHhHc-CCCEEEEeCCCCccHHHHHHHHHH
Q 008731 477 KQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 477 ~~~---~k~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
++. .++|+++.+.+. .+. .+..+|+|||+ .|++++++.|.+
T Consensus 170 ~~~~~~~~g~v~~~~~~~------~~~~~~~~v~icGp~-~m~~~~~~~l~~ 214 (228)
T cd06209 170 PDSWHPRKGYVTDHLEAE------DLNDGDVDVYLCGPP-PMVDAVRSWLDE 214 (228)
T ss_pred CCccCCCcCCccHHHHHh------hccCCCcEEEEeCCH-HHHHHHHHHHHH
Confidence 654 456888766543 122 36789999998 999999988875
No 29
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.93 E-value=1.6e-25 Score=222.47 Aligned_cols=185 Identities=21% Similarity=0.280 Sum_probs=147.4
Q ss_pred CchhHHHhhcCCC----CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEE-eecCC
Q 008731 319 MPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGS 393 (556)
Q Consensus 319 ~p~~~l~~~lp~~----~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~-~~~g~ 393 (556)
.|+|++...+|.. ..|+|||+|.+.. +.++|+|.+ ...|.+|+||+++++ |+.|.+. +|.|.
T Consensus 26 ~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gP~G~ 92 (241)
T cd06195 26 QAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIIL---------VPDGPLTPRLFKLKP--GDTIYVGKKPTGF 92 (241)
T ss_pred CCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEE---------ecCCCCchHHhcCCC--CCEEEECcCCCCc
Confidence 5777776666542 5699999999854 789998854 356999999999999 9999999 99999
Q ss_pred CCCC-C-CCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhc-CCCccccCCCcE
Q 008731 394 LPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN-DGVFSEAKGGGF 470 (556)
Q Consensus 394 F~lp-~-~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~-~g~l~~~~~~~~ 470 (556)
|.++ . ...+++|||+|||||||++++++....... .+++|+||+|+.+|++|.+||+++.+. ++++ ++
T Consensus 93 f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~------~~ 163 (241)
T cd06195 93 LTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWERF---DKIVLVHGVRYAEELAYQDEIEALAKQYNGKF------RY 163 (241)
T ss_pred eeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCCC---CcEEEEEccCCHHHhhhHHHHHHHHhhcCCCE------EE
Confidence 9887 4 468999999999999999999998765443 789999999999999999999999875 4677 78
Q ss_pred EEEEecCCCC---ccchhhhHHHc-HHHHHHh-H-cCCCEEEEeCCCCccHHHHHHHHHHHH
Q 008731 471 YVAFSRKQPQ---KVYVQHKMLEQ-SQRIWNL-L-LSKASIYVAGSATKMPSDVWSTFEEIV 526 (556)
Q Consensus 471 ~~a~Sr~~~~---k~yVqd~l~~~-~~~l~~~-l-~~~~~iyvCG~~~~m~~~v~~~L~~i~ 526 (556)
+.++|+++.. ++|+++.+... ....... . .++..||+|||+ .|++++.+.|.+..
T Consensus 164 ~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~-~m~~~~~~~l~~~G 224 (241)
T cd06195 164 VPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNP-QMIDDTQELLKEKG 224 (241)
T ss_pred EEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCH-HHHHHHHHHHHHcC
Confidence 8889987653 57888876531 1111111 1 246899999998 99999998887653
No 30
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.92 E-value=2.2e-25 Score=232.66 Aligned_cols=179 Identities=20% Similarity=0.304 Sum_probs=146.8
Q ss_pred CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCCCCCC
Q 008731 319 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPRP 397 (556)
Q Consensus 319 ~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~lp 397 (556)
.|+|++...+|....|+|||+|+|.. .+.++|+|+. ...|.+|+||. .+++ |+.|.+.+|.|.|.++
T Consensus 133 ~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~---------~~~G~~s~~l~~~l~~--G~~v~v~gP~G~~~~~ 200 (339)
T PRK07609 133 LAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRH---------MPGGVFTDHVFGALKE--RDILRIEGPLGTFFLR 200 (339)
T ss_pred CCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEe---------cCCCccHHHHHHhccC--CCEEEEEcCceeEEec
Confidence 36777666677667899999999853 4789999954 46799999996 6999 9999999999999987
Q ss_pred -CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 398 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 398 -~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
....|+||||+|||||||+||+++....+.. .+++||||+|+.+|++++++|++|.+.++++ +++.++||
T Consensus 201 ~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~---~~i~l~~g~r~~~dl~~~e~l~~~~~~~~~~------~~~~~~s~ 271 (339)
T PRK07609 201 EDSDKPIVLLASGTGFAPIKSIVEHLRAKGIQ---RPVTLYWGARRPEDLYLSALAEQWAEELPNF------RYVPVVSD 271 (339)
T ss_pred CCCCCCEEEEecCcChhHHHHHHHHHHhcCCC---CcEEEEEecCChHHhccHHHHHHHHHhCCCe------EEEEEecC
Confidence 5778999999999999999999999876544 6899999999999999999999998765788 88889998
Q ss_pred CC------CCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHH
Q 008731 477 KQ------PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 477 ~~------~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
+. ..++||++.+.+.... ..+..+|+|||+ .|++++.+.|.+
T Consensus 272 ~~~~~~~~g~~G~v~~~~~~~~~~-----~~~~~vy~CGp~-~m~~~~~~~l~~ 319 (339)
T PRK07609 272 ALDDDAWTGRTGFVHQAVLEDFPD-----LSGHQVYACGSP-VMVYAARDDFVA 319 (339)
T ss_pred CCCCCCccCccCcHHHHHHhhccc-----ccCCEEEEECCH-HHHHHHHHHHHH
Confidence 42 1467888766543111 136889999998 999999888866
No 31
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.92 E-value=4.6e-25 Score=230.03 Aligned_cols=179 Identities=21% Similarity=0.323 Sum_probs=146.0
Q ss_pred CchhHHHhhcCCC-CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCCCCC
Q 008731 319 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~l 396 (556)
.|+|++...+|.. ..|+|||+|+|.. .+.++|+|+. ...|.+|+||. ++++ |+.|.+.+|.|.|.+
T Consensus 138 ~pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~---------~~~G~~s~~L~~~l~~--G~~v~i~gP~G~f~l 205 (340)
T PRK11872 138 LPGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRL---------LPDGVMSNYLRERCQV--GDEILFEAPLGAFYL 205 (340)
T ss_pred CCCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEE---------CCCCcchhhHhhCCCC--CCEEEEEcCcceeEe
Confidence 4677766556654 3799999999853 4789999954 35799999996 6999 999999999999988
Q ss_pred CCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 397 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 397 p~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
+...+|+||||+|||||||++|+++....... .+++||||+|+.+|++|.+||++|.+.++++ +++.+.|+
T Consensus 206 ~~~~~~~vliagGtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~dl~~~~el~~~~~~~~~~------~~~~~~s~ 276 (340)
T PRK11872 206 REVERPLVFVAGGTGLSAFLGMLDELAEQGCS---PPVHLYYGVRHAADLCELQRLAAYAERLPNF------RYHPVVSK 276 (340)
T ss_pred CCCCCcEEEEeCCcCccHHHHHHHHHHHcCCC---CcEEEEEecCChHHhccHHHHHHHHHHCCCc------EEEEEEeC
Confidence 74468999999999999999999998875443 6899999999999999999999998876888 88888887
Q ss_pred CCC----CccchhhhHHHcHHHHHHhHc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 477 KQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 477 ~~~----~k~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
.++ .++||++.+.+. .+. .+..+|+|||+ .|++++.+.|.+.
T Consensus 277 ~~~~~~g~~g~v~~~l~~~------~l~~~~~~vy~CGp~-~mv~~~~~~L~~~ 323 (340)
T PRK11872 277 ASADWQGKRGYIHEHFDKA------QLRDQAFDMYLCGPP-PMVEAVKQWLDEQ 323 (340)
T ss_pred CCCcCCCceeeccHHHHHh------hcCcCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence 543 467888766532 122 25689999998 9999999888654
No 32
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.92 E-value=3.6e-25 Score=236.13 Aligned_cols=182 Identities=19% Similarity=0.235 Sum_probs=142.1
Q ss_pred CchhHHHhhcC--C--C-CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCceEEEEeecC
Q 008731 319 MPIDWLVQLVP--P--L-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG 392 (556)
Q Consensus 319 ~p~~~l~~~lp--~--~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g 392 (556)
.|+|++...++ . . .+|+|||+|+|. .+.++|+|+. ...|.+|+||++ +++ |++|.+.+|.|
T Consensus 186 ~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~G 252 (399)
T PRK13289 186 KPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKR---------EAGGKVSNYLHDHVNV--GDVLELAAPAG 252 (399)
T ss_pred CCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEE---------CCCCeehHHHhhcCCC--CCEEEEEcCcc
Confidence 46777766654 1 1 359999999985 3689998843 356999999985 999 99999999999
Q ss_pred CCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEE
Q 008731 393 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY 471 (556)
Q Consensus 393 ~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~ 471 (556)
.|.++ ...+|+||||+|||||||+||+++....... .+++||||+|+.+|++|++||+++.+.++++ +++
T Consensus 253 ~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~eL~~l~~~~~~~------~~~ 323 (399)
T PRK13289 253 DFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQPK---RPVHFIHAARNGGVHAFRDEVEALAARHPNL------KAH 323 (399)
T ss_pred ccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCCC---CCEEEEEEeCChhhchHHHHHHHHHHhCCCc------EEE
Confidence 99988 5678999999999999999999998765544 7899999999999999999999998875688 889
Q ss_pred EEEecCCCC----ccchh-hhHHHcHHHHHHhHc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 472 VAFSRKQPQ----KVYVQ-HKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 472 ~a~Sr~~~~----k~yVq-d~l~~~~~~l~~~l~-~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
.++|++... ..|.+ ..+. .+.+.+.+. .+..+|||||+ .|.+++.+.|.+.
T Consensus 324 ~~~s~~~~~~~~~~~~~~~g~i~--~~~l~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~~ 380 (399)
T PRK13289 324 TWYREPTEQDRAGEDFDSEGLMD--LEWLEAWLPDPDADFYFCGPV-PFMQFVAKQLLEL 380 (399)
T ss_pred EEECCCccccccCCcccccCccc--HHHHHhhCCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 999985431 11211 1221 122333333 37899999998 9999999888664
No 33
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.92 E-value=7.1e-25 Score=215.17 Aligned_cols=180 Identities=21% Similarity=0.265 Sum_probs=145.9
Q ss_pred CchhHHHhhcCCC--CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCceEEEEeecCCCC
Q 008731 319 MPIDWLVQLVPPL--KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP 395 (556)
Q Consensus 319 ~p~~~l~~~lp~~--~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~ 395 (556)
.|+|++...+|.. ..|+|||+|.|.. .+.++|+|.. ...|.+|+||.+ +++ |+.|.+.+|.|.|.
T Consensus 25 ~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~ 92 (224)
T cd06187 25 WAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRA---------VPGGRVSNALHDELKV--GDRVRLSGPYGTFY 92 (224)
T ss_pred CCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEe---------CCCCcchHHHhhcCcc--CCEEEEeCCccceE
Confidence 3677776666654 4799999999864 4789999853 346999999986 999 99999999999998
Q ss_pred CC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEE
Q 008731 396 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 474 (556)
Q Consensus 396 lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 474 (556)
++ ....++||||+|||||||++|+++....... .+++|+|++|+.+|++|.++|+++.+.+.++ ++.+++
T Consensus 93 ~~~~~~~~~lliagG~GI~p~~sll~~~~~~~~~---~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~ 163 (224)
T cd06187 93 LRRDHDRPVLCIAGGTGLAPLRAIVEDALRRGEP---RPVHLFFGARTERDLYDLEGLLALAARHPWL------RVVPVV 163 (224)
T ss_pred ecCCCCCCEEEEecCcCHHHHHHHHHHHHhcCCC---CCEEEEEecCChhhhcChHHHHHHHHhCCCe------EEEEEe
Confidence 87 5578999999999999999999998876533 6899999999999999999999998765677 777788
Q ss_pred ecCCC----CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 475 SRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 475 Sr~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
++++. .++|+++.+.+.... .++..+|+||++ .|++++++.|++.
T Consensus 164 ~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~v~vcGp~-~~~~~v~~~l~~~ 212 (224)
T cd06187 164 SHEEGAWTGRRGLVTDVVGRDGPD-----WADHDIYICGPP-AMVDATVDALLAR 212 (224)
T ss_pred CCCCCccCCCcccHHHHHHHhccc-----cccCEEEEECCH-HHHHHHHHHHHHc
Confidence 87543 467888776543110 136899999998 9999998888653
No 34
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.92 E-value=5.7e-25 Score=234.85 Aligned_cols=181 Identities=20% Similarity=0.331 Sum_probs=145.2
Q ss_pred CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCCCCCCCCCeEEEcCCC
Q 008731 331 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT 410 (556)
Q Consensus 331 ~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~lp~~~~piimIa~GT 410 (556)
...|+|||+|.|.. .+.++|+|+++.+....++.+.|.+|+||+++++ |++|.+.+|.|.|.+++..+|+||||+||
T Consensus 208 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~f~~~~~~~~ivlIAgGt 284 (409)
T PRK05464 208 PVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGA 284 (409)
T ss_pred ceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCC--CCEEEEEccccCcEecCCCceEEEEEecc
Confidence 45799999999854 4689999988766554456678999999999999 99999999999998765568999999999
Q ss_pred CchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEecCCC------Cccch
Q 008731 411 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYV 484 (556)
Q Consensus 411 GIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yV 484 (556)
|||||+||+++....... ..+++||||+|+.+|++|.++|+++.+.++++ ++++++|+++. .+++|
T Consensus 285 GIaP~~sml~~~l~~~~~--~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~g~~G~v 356 (409)
T PRK05464 285 GMAPMRSHIFDQLKRLKS--KRKISFWYGARSLREMFYVEDFDQLAAENPNF------KWHVALSDPLPEDNWTGYTGFI 356 (409)
T ss_pred ChhHHHHHHHHHHhCCCC--CceEEEEEecCCHHHhhHHHHHHHHHHhCCCe------EEEEEEcCCCCCCCCCCcccee
Confidence 999999999987764322 26899999999999999999999998876788 88888887532 35677
Q ss_pred hhhHHHcHHHHHHhH-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 485 QHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 485 qd~l~~~~~~l~~~l-~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
++.+.+.. +.+.. ..+..||+|||+ .|++++.+.|.+.
T Consensus 357 ~~~l~~~~--l~~~~~~~~~~vyiCGP~-~m~~av~~~L~~~ 395 (409)
T PRK05464 357 HNVLYENY--LKDHEAPEDCEYYMCGPP-MMNAAVIKMLKDL 395 (409)
T ss_pred CHHHHHhh--hhhcCCCCCeEEEEECCH-HHHHHHHHHHHHc
Confidence 77665431 11111 136799999998 9999998887653
No 35
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.92 E-value=6.7e-25 Score=216.72 Aligned_cols=180 Identities=24% Similarity=0.388 Sum_probs=145.2
Q ss_pred CchhHHHhhcCCC-CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCceEEEEeecCCCCC
Q 008731 319 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~l 396 (556)
.|+|++...+|.. ..|+|||+|.|.. .+.++|+|+. ...|.+|+||.+ +++ |++|.+.+|.|.|.+
T Consensus 31 ~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~ 98 (232)
T cd06212 31 FAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKK---------YPGGLFSSFLDDGLAV--GDPVTVTGPYGTCTL 98 (232)
T ss_pred CCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEE---------CCCCchhhHHhhcCCC--CCEEEEEcCccccee
Confidence 4788777667653 6899999999854 4789999854 356999999985 999 999999999999988
Q ss_pred C-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEe
Q 008731 397 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 475 (556)
Q Consensus 397 p-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 475 (556)
+ ....++||||+|||||||++++++....... .+++|+||+|+.+|++|.+||+++.+.+.++ +++.++|
T Consensus 99 ~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s 169 (232)
T cd06212 99 RESRDRPIVLIGGGSGMAPLLSLLRDMAASGSD---RPVRFFYGARTARDLFYLEEIAALGEKIPDF------TFIPALS 169 (232)
T ss_pred cCCCCCcEEEEecCcchhHHHHHHHHHHhcCCC---CcEEEEEeccchHHhccHHHHHHHHHhCCCE------EEEEEEC
Confidence 7 5578999999999999999999998876544 6899999999999999999999998765677 7888899
Q ss_pred cCCC------CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 476 RKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 476 r~~~------~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
++.. ..+++++.+.+.... .++..+|+|||+ .|.+++.+.|.+.
T Consensus 170 ~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~v~~CGp~-~~~~~v~~~l~~~ 219 (232)
T cd06212 170 ESPDDEGWSGETGLVTEVVQRNEAT-----LAGCDVYLCGPP-PMIDAALPVLEMS 219 (232)
T ss_pred CCCCCCCCcCCcccHHHHHHhhccC-----ccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 8542 246776655432111 136889999998 9999888887653
No 36
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.92 E-value=8.7e-25 Score=233.14 Aligned_cols=181 Identities=21% Similarity=0.349 Sum_probs=143.2
Q ss_pred CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCCCCCCCCCeEEEcCCC
Q 008731 331 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT 410 (556)
Q Consensus 331 ~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~lp~~~~piimIa~GT 410 (556)
...|+|||+|+|.. .+.++|+|+++.+....++.+.|.+|+||.++++ |++|.+.+|.|.|.+++..+|+||||+||
T Consensus 204 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~l~~~~~~lvlIAgGt 280 (405)
T TIGR01941 204 ETVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGA 280 (405)
T ss_pred ccceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCC--cCEEEEEeccCCCeecCCCCCEEEEecCc
Confidence 45699999999854 4789999987654433334568999999999999 99999999999998775568999999999
Q ss_pred CchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEecCCC------Cccch
Q 008731 411 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYV 484 (556)
Q Consensus 411 GIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yV 484 (556)
|||||+||+++....... ..+++||||+|+++|++|.+||+++.+.++++ ++++++|+++. .+++|
T Consensus 281 GIaP~lsmi~~~l~~~~~--~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~g~~G~v 352 (405)
T TIGR01941 281 GMAPMRSHIFDQLKRLKS--KRKISFWYGARSLREMFYQEDFDQLEAENPNF------VWHVALSDPQPEDNWTGYTGFI 352 (405)
T ss_pred CcchHHHHHHHHHhcCCC--CCeEEEEEecCCHHHHhHHHHHHHHHHhCCCe------EEEEEeCCCCccCCCCCcccee
Confidence 999999999987764221 26799999999999999999999998776788 78888887532 35677
Q ss_pred hhhHHHcHHHHHHhH-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 485 QHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 485 qd~l~~~~~~l~~~l-~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
++.+.+. .+.+.. ..+..+|+|||+ .|++++.+.|.+.
T Consensus 353 ~~~l~~~--~l~~~~~~~~~~vylCGP~-~m~~av~~~L~~~ 391 (405)
T TIGR01941 353 HNVLYEN--YLKDHDAPEDCEFYMCGPP-MMNAAVIKMLEDL 391 (405)
T ss_pred CHHHHHh--hhcccCCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence 7766432 111111 236789999998 9999998888653
No 37
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.92 E-value=6.5e-25 Score=228.35 Aligned_cols=182 Identities=15% Similarity=0.239 Sum_probs=142.8
Q ss_pred CchhHHHhhcCC--CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCCCC
Q 008731 319 MPIDWLVQLVPP--LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLP 395 (556)
Q Consensus 319 ~p~~~l~~~lp~--~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~ 395 (556)
.|+|++...++. ...|+|||+|.|.. .+.++|+|+. ...|.+|+||+ ++++ |++|.+.+|.|.|.
T Consensus 38 ~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~G~f~ 105 (332)
T PRK10684 38 RAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRR---------IDDGVGSQWLTRDVKR--GDYLWLSDAMGEFT 105 (332)
T ss_pred CCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEE---------cCCCcchhHHHhcCCC--CCEEEEeCCccccc
Confidence 478887666664 24699999999853 4679999943 46799999996 7999 99999999999999
Q ss_pred CC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEE
Q 008731 396 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 474 (556)
Q Consensus 396 lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 474 (556)
++ ....|+||||+|||||||+||+++....... .+++|+||+|+.+|++|.+||+++.+.++++ ++++..
T Consensus 106 l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~~---~~v~l~y~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~ 176 (332)
T PRK10684 106 CDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQ---ADVQVIFNVRTPQDVIFADEWRQLKQRYPQL------NLTLVA 176 (332)
T ss_pred cCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCC---CCEEEEEeCCChHHhhhHHHHHHHHHHCCCe------EEEEEe
Confidence 87 5678999999999999999999998765443 7899999999999999999999998876777 677766
Q ss_pred ecCCCCccchhhhHHHcHHHHHHhHc--CCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 475 SRKQPQKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 475 Sr~~~~k~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+++.. +.|.+..+... .+.+.+. .+..+|+|||+ .|++++.+.|.+.
T Consensus 177 ~~~~~-~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP~-~m~~~v~~~l~~~ 225 (332)
T PRK10684 177 ENNAT-EGFIAGRLTRE--LLQQAVPDLASRTVMTCGPA-PYMDWVEQEVKAL 225 (332)
T ss_pred ccCCC-CCccccccCHH--HHHHhcccccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 65432 34445444321 1222222 26789999998 9999998888664
No 38
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.92 E-value=5.3e-25 Score=217.30 Aligned_cols=177 Identities=17% Similarity=0.314 Sum_probs=140.2
Q ss_pred CchhHHHhhcC--C-CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCCC
Q 008731 319 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 394 (556)
Q Consensus 319 ~p~~~l~~~lp--~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F 394 (556)
.|+|++...++ . ..+|+|||+|.+. .+.++|+|+. ...|.+|+||. ++++ |++|.+.+|.|.|
T Consensus 29 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~f 95 (231)
T cd06191 29 RPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKR---------VPGGRVSNYLREHIQP--GMTVEVMGPQGHF 95 (231)
T ss_pred CCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEE---------CCCCccchHHHhcCCC--CCEEEEeCCccce
Confidence 47887766554 2 3579999999985 4789999854 34599999998 6999 9999999999999
Q ss_pred CCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEE
Q 008731 395 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 473 (556)
Q Consensus 395 ~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 473 (556)
.++ ....++||||+||||||++|++++....... .++.||||+|+.+|++|++||+++.+.++++ +++++
T Consensus 96 ~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~ 166 (231)
T cd06191 96 VYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAPE---SDFTLIHSARTPADMIFAQELRELADKPQRL------RLLCI 166 (231)
T ss_pred EeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCCC---CCEEEEEecCCHHHHhHHHHHHHHHHhCCCe------EEEEE
Confidence 887 5668999999999999999999998765444 7899999999999999999999998765778 88999
Q ss_pred EecCCCC------ccchhhhHHHcHHHHHHhHc--CCCEEEEeCCCCccHHHHHHHHHH
Q 008731 474 FSRKQPQ------KVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 474 ~Sr~~~~------k~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
+||++.. ++++.+.+.+ .++. .++.+|+||++ .|++++++.|.+
T Consensus 167 ~s~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~vyicGp~-~mv~~~~~~l~~ 218 (231)
T cd06191 167 FTRETLDSDLLHGRIDGEQSLGA------ALIPDRLEREAFICGPA-GMMDAVETALKE 218 (231)
T ss_pred ECCCCCCccccCCcccccHHHHH------HhCccccCCeEEEECCH-HHHHHHHHHHHH
Confidence 9986532 2223222211 1222 25899999998 999998888865
No 39
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.92 E-value=7.8e-25 Score=216.76 Aligned_cols=181 Identities=17% Similarity=0.225 Sum_probs=145.4
Q ss_pred CchhHHHhhcCC-CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCceEEEEeecCCCCC
Q 008731 319 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~l 396 (556)
.|+|++...+|. ...|+|||+|.|.. .+.++|+|++ ...|.+|+||.+ +++ |+.|.+.+|.|.|.+
T Consensus 36 ~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~f~l 103 (236)
T cd06210 36 VPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRL---------LPGGAFSTYLETRAKV--GQRLNLRGPLGAFGL 103 (236)
T ss_pred CCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEE---------cCCCccchhhhhCcCC--CCEEEEecCcceeee
Confidence 477877766664 35799999999863 4789999854 346999999986 999 999999999999988
Q ss_pred C-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEe
Q 008731 397 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 475 (556)
Q Consensus 397 p-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 475 (556)
+ ...+++||||+|||||||+++++++...... .+++||||+|+.+|++|.++|+++.+.++++ ++++++|
T Consensus 104 ~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s 174 (236)
T cd06210 104 RENGLRPRWFVAGGTGLAPLLSMLRRMAEWGEP---QEARLFFGVNTEAELFYLDELKRLADSLPNL------TVRICVW 174 (236)
T ss_pred cCCCCccEEEEccCcchhHHHHHHHHHHhcCCC---ceEEEEEecCCHHHhhhHHHHHHHHHhCCCe------EEEEEEc
Confidence 7 5568999999999999999999998775443 6799999999999999999999999876788 8888888
Q ss_pred cCCC----CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 476 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 476 r~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
|++. .++++++.+.+.... ...+..+|+|||+ .|++++++.|.+.
T Consensus 175 ~~~~~~~~~~g~~~~~l~~~l~~----~~~~~~vyicGp~-~m~~~~~~~l~~~ 223 (236)
T cd06210 175 RPGGEWEGYRGTVVDALREDLAS----SDAKPDIYLCGPP-GMVDAAFAAAREA 223 (236)
T ss_pred CCCCCcCCccCcHHHHHHHhhcc----cCCCcEEEEeCCH-HHHHHHHHHHHHc
Confidence 7543 356676655432111 1235789999998 9999999888653
No 40
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.92 E-value=1.2e-24 Score=214.24 Aligned_cols=178 Identities=20% Similarity=0.338 Sum_probs=143.2
Q ss_pred CchhHHHhhcCCC-CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCCCCC
Q 008731 319 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~l 396 (556)
.|+|++...+|.. ..|+|||+|+|.. .+.++|+|.. ...|.+|+||. .+++ |++|.+.+|.|.|.+
T Consensus 29 ~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~ 96 (227)
T cd06213 29 KAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRK---------VPGGAFSGWLFGADRT--GERLTVRGPFGDFWL 96 (227)
T ss_pred CCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEE---------CCCCcchHHHHhcCCC--CCEEEEeCCCcceEe
Confidence 3778777666654 5899999999853 4789999843 35699999995 6999 999999999999988
Q ss_pred CCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhc-CCCccccCCCcEEEEEe
Q 008731 397 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN-DGVFSEAKGGGFYVAFS 475 (556)
Q Consensus 397 p~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~-~g~l~~~~~~~~~~a~S 475 (556)
++..+++||||+|||||||++++++....... .+++|+||+|+++|++|.++|+++.+. .+++ +++.++|
T Consensus 97 ~~~~~~~lliagG~GiaP~~~~~~~~~~~~~~---~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~------~~~~~~s 167 (227)
T cd06213 97 RPGDAPILCIAGGSGLAPILAILEQARAAGTK---RDVTLLFGARTQRDLYALDEIAAIAARWRGRF------RFIPVLS 167 (227)
T ss_pred CCCCCcEEEEecccchhHHHHHHHHHHhcCCC---CcEEEEEeeCCHHHhccHHHHHHHHHhccCCe------EEEEEec
Confidence 74457999999999999999999998875543 679999999999999999999999864 2567 7888888
Q ss_pred cCCC------CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 476 RKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 476 r~~~------~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+++. .++++++.+.+. +..+..+|+|||+ .|++++++.|.+.
T Consensus 168 ~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp~-~~~~~~~~~l~~~ 215 (227)
T cd06213 168 EEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGPP-AMIDAAIAVLRAL 215 (227)
T ss_pred CCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 7642 235676655432 2357899999998 9999998888663
No 41
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.92 E-value=8.4e-25 Score=223.04 Aligned_cols=178 Identities=19% Similarity=0.225 Sum_probs=140.7
Q ss_pred CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCC-CCCC
Q 008731 319 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPRP 397 (556)
Q Consensus 319 ~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~lp 397 (556)
.|+|++...+|....|+|||+|+|.. .+.++|+|+ +.|.+|+||+++++ |++|.+.+|.|. |.++
T Consensus 39 ~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik-----------~~G~~S~~L~~l~~--Gd~v~v~gP~G~~f~~~ 104 (289)
T PRK08345 39 KPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIR-----------RAGRVTTVIHRLKE--GDIVGVRGPYGNGFPVD 104 (289)
T ss_pred CCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEE-----------eCChHHHHHHhCCC--CCEEEEeCCCCCCCCcc
Confidence 47888777777666799999999853 478999994 24899999999999 999999999998 6665
Q ss_pred -CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 398 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 398 -~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
...+|+||||+|||||||+||++++...... ..+++|+||+|+.+|++|++||+++.+.++++ +++.++|+
T Consensus 105 ~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~--~~~v~l~~~~r~~~d~~~~deL~~l~~~~~~~------~~~~~~s~ 176 (289)
T PRK08345 105 EMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWK--YGNITLIYGAKYYEDLLFYDELIKDLAEAENV------KIIQSVTR 176 (289)
T ss_pred cccCceEEEEecccchhHHHHHHHHHHhcCCC--CCcEEEEEecCCHHHhhHHHHHHHHHhcCCCE------EEEEEecC
Confidence 4457999999999999999999998765411 26899999999999999999999997765778 88888998
Q ss_pred CCCC---------------ccchhhhHHHcHHHHHHhH-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 477 KQPQ---------------KVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 477 ~~~~---------------k~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
++.. ++++++.+.+. .. .++..+|+|||+ .|++++.+.|.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP~-~m~~~v~~~L~~~ 234 (289)
T PRK08345 177 DPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGPP-VMYKFVFKELINR 234 (289)
T ss_pred CCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECCH-HHHHHHHHHHHHc
Confidence 5432 23333333221 11 136789999998 9999999888764
No 42
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.91 E-value=3.9e-24 Score=209.81 Aligned_cols=180 Identities=21% Similarity=0.260 Sum_probs=141.8
Q ss_pred CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCceEEEEeecCCCCCC
Q 008731 319 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPRP 397 (556)
Q Consensus 319 ~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~lp 397 (556)
.|+|++...+|....|+|||+|+|.. .+.++|+|.. ...|.+|.||.+ +++ |+.|.+.+|.|.|.+.
T Consensus 25 ~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~~~~~ 92 (222)
T cd06194 25 LPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRR---------KPNGAFSGWLGEEARP--GHALRLQGPFGQAFYR 92 (222)
T ss_pred CCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEe---------ccCCccchHHHhccCC--CCEEEEecCcCCeecc
Confidence 47787777777777899999999864 3689998843 356999999987 799 9999999999987664
Q ss_pred --CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEe
Q 008731 398 --PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 475 (556)
Q Consensus 398 --~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 475 (556)
....+++|||+||||||++++++++...... .+++|+||+|+.+|++|++||+++.+.++++ +++.+.|
T Consensus 93 ~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~~ 163 (222)
T cd06194 93 PEYGEGPLLLVGAGTGLAPLWGIARAALRQGHQ---GEIRLVHGARDPDDLYLHPALLWLAREHPNF------RYIPCVS 163 (222)
T ss_pred CCCCCCCEEEEecCcchhhHHHHHHHHHhcCCC---ccEEEEEecCChhhccCHHHHHHHHHHCCCe------EEEEEEc
Confidence 4568999999999999999999998765544 7899999999999999999999998765778 7888888
Q ss_pred cCCCCcc--chhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 476 RKQPQKV--YVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 476 r~~~~k~--yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+++.... ++.+ +.+ .+. ...++..+|+|||+ .|++++++.|.+.
T Consensus 164 ~~~~~~~~~~~~~-~~~---~~~-~~~~~~~vyicGp~-~m~~~~~~~L~~~ 209 (222)
T cd06194 164 EGSQGDPRVRAGR-IAA---HLP-PLTRDDVVYLCGAP-SMVNAVRRRAFLA 209 (222)
T ss_pred cCCCCCcccccch-hhh---hhc-cccCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence 8654321 1211 111 111 12347899999998 9999999888764
No 43
>PRK05713 hypothetical protein; Provisional
Probab=99.91 E-value=2.7e-24 Score=221.77 Aligned_cols=174 Identities=18% Similarity=0.172 Sum_probs=136.7
Q ss_pred CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecC-CCCCC
Q 008731 319 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLPRP 397 (556)
Q Consensus 319 ~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g-~F~lp 397 (556)
.|+|++...++....|+|||+|.|.. .+.++|+|+. ...|.+|+||.++++ |++|.+..+.| .|.++
T Consensus 120 ~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~---------~~~G~~s~~l~~l~~--Gd~v~l~~p~gg~~~~~ 187 (312)
T PRK05713 120 RAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDC---------SRPGAFCDAARQLQV--GDLLRLGELRGGALHYD 187 (312)
T ss_pred CCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEE---------cCCCccchhhhcCCC--CCEEEEccCCCCceEec
Confidence 36676655556556899999999854 4789999853 357999999999999 99999999886 56565
Q ss_pred -C-CCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEe
Q 008731 398 -P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 475 (556)
Q Consensus 398 -~-~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 475 (556)
+ ..+|+||||+|||||||+||+++....+.. .+++|+||+|+.+|++|.+||++|.+.++++ ++..+.+
T Consensus 188 ~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~~ 258 (312)
T PRK05713 188 PDWQERPLWLLAAGTGLAPLWGILREALRQGHQ---GPIRLLHLARDSAGHYLAEPLAALAGRHPQL------SVELVTA 258 (312)
T ss_pred CCCCCCcEEEEecCcChhHHHHHHHHHHhcCCC---CcEEEEEEcCchHHhhhHHHHHHHHHHCCCc------EEEEEEC
Confidence 4 568999999999999999999998776544 6899999999999999999999998866778 7776665
Q ss_pred cCCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 476 RKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 476 r~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+ ++++.+.+.. ....+..+|+|||+ +|++++.+.|.+.
T Consensus 259 ~------~~~~~l~~~~-----~~~~~~~vyiCGp~-~mv~~~~~~L~~~ 296 (312)
T PRK05713 259 A------QLPAALAELR-----LVSRQTMALLCGSP-ASVERFARRLYLA 296 (312)
T ss_pred c------chhhhhhhcc-----CCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence 3 2444332210 01235789999998 9999999888653
No 44
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.91 E-value=4.6e-24 Score=212.77 Aligned_cols=178 Identities=20% Similarity=0.321 Sum_probs=140.7
Q ss_pred CchhHHHhhcC--C---CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCceEEEEeecC
Q 008731 319 MPIDWLVQLVP--P---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG 392 (556)
Q Consensus 319 ~p~~~l~~~lp--~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g 392 (556)
.|+|++...++ . ...|+|||+|.|.. +.++|+|+. ...|.+|+||++ +++ |++|.+.+|.|
T Consensus 38 ~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G 104 (247)
T cd06184 38 LPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKR---------EPGGLVSNYLHDNVKV--GDVLEVSAPAG 104 (247)
T ss_pred CCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCCC
Confidence 46777665553 2 46799999999854 578888743 346999999987 999 99999999999
Q ss_pred CCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEE
Q 008731 393 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY 471 (556)
Q Consensus 393 ~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~ 471 (556)
.|.++ ...+++||||+|||||||++++++....... .+++|+||+|++++++|+++|+++.+.++++ +++
T Consensus 105 ~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~~---~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~ 175 (247)
T cd06184 105 DFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGPG---RPVTFIHAARNSAVHAFRDELEELAARLPNL------KLH 175 (247)
T ss_pred ceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCCC---CcEEEEEEcCchhhHHHHHHHHHHHhhCCCe------EEE
Confidence 99887 4678999999999999999999999875433 7899999999999999999999998765677 889
Q ss_pred EEEecCCCC--------ccchhhhHHHcHHHHHH-hHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 472 VAFSRKQPQ--------KVYVQHKMLEQSQRIWN-LLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 472 ~a~Sr~~~~--------k~yVqd~l~~~~~~l~~-~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+++|++... .++++. +.+.+ ...++..+|+|||+ .|++++++.|.+.
T Consensus 176 ~~~s~~~~~~~~~~~~~~g~~~~------~~l~~~~~~~~~~v~icGp~-~m~~~v~~~l~~~ 231 (247)
T cd06184 176 VFYSEPEAGDREEDYDHAGRIDL------ALLRELLLPADADFYLCGPV-PFMQAVREGLKAL 231 (247)
T ss_pred EEECCCCcccccccccccCccCH------HHHhhccCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 999986432 233332 12222 12348899999998 9999999888653
No 45
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.90 E-value=6.8e-24 Score=209.22 Aligned_cols=178 Identities=22% Similarity=0.317 Sum_probs=139.2
Q ss_pred CchhHHHhhcCC---CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCCC
Q 008731 319 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 394 (556)
Q Consensus 319 ~p~~~l~~~lp~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F 394 (556)
.|+|++...+|. ...|+|||+|.|.. .+.++|+|.+ ...|.+|.||+ ++++ |++|.+.+|.|.|
T Consensus 29 ~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~f 96 (231)
T cd06215 29 KPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKR---------VPGGLVSNWLHDNLKV--GDELWASGPAGEF 96 (231)
T ss_pred CCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCccee
Confidence 477776665542 34799999999853 4679999854 34699999996 7999 9999999999999
Q ss_pred CCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEE
Q 008731 395 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 473 (556)
Q Consensus 395 ~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 473 (556)
.++ ....++||||+|||||||++++++....+.. .+++||||+|+.+|++|.++|+++.+.+.++ ++.++
T Consensus 97 ~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~ 167 (231)
T cd06215 97 TLIDHPADKLLLLSAGSGITPMMSMARWLLDTRPD---ADIVFIHSARSPADIIFADELEELARRHPNF------RLHLI 167 (231)
T ss_pred EeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCC---CcEEEEEecCChhhhhHHHHHHHHHHHCCCe------EEEEE
Confidence 887 4478999999999999999999998775443 6799999999999999999999998865677 78888
Q ss_pred EecCCCC-----ccchhhhHHHcHHHHHHhHc--CCCEEEEeCCCCccHHHHHHHHHH
Q 008731 474 FSRKQPQ-----KVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 474 ~Sr~~~~-----k~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
.++++.. .+++... .+.+.+. .+..+|+|||+ .|++++++.|.+
T Consensus 168 ~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~~v~icGp~-~m~~~~~~~l~~ 218 (231)
T cd06215 168 LEQPAPGAWGGYRGRLNAE------LLALLVPDLKERTVFVCGPA-GFMKAVKSLLAE 218 (231)
T ss_pred EccCCCCcccccCCcCCHH------HHHHhcCCccCCeEEEECCH-HHHHHHHHHHHH
Confidence 8875541 2333321 1222222 25789999998 999988887765
No 46
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.90 E-value=6.5e-24 Score=207.65 Aligned_cols=175 Identities=15% Similarity=0.224 Sum_probs=134.8
Q ss_pred CchhHHHhhcCC----CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCC
Q 008731 319 MPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 394 (556)
Q Consensus 319 ~p~~~l~~~lp~----~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F 394 (556)
.|+|++...++. ...|+|||+|+|.. +.++|+|+++ ...|..|.||.++++ |+.|.+.+|.|.|
T Consensus 29 ~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~--~~l~~~vk~~--------~~~g~~s~~l~~l~~--G~~v~i~gP~G~~ 96 (218)
T cd06196 29 TPGQATEVAIDKPGWRDEKRPFTFTSLPED--DVLEFVIKSY--------PDHDGVTEQLGRLQP--GDTLLIEDPWGAI 96 (218)
T ss_pred CCCCEEEEEeeCCCCCccccccccccCCCC--CeEEEEEEEc--------CCCCcHhHHHHhCCC--CCEEEEECCccce
Confidence 577777666642 35899999999854 7899998642 123678999999999 9999999999998
Q ss_pred CCCCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEE
Q 008731 395 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 474 (556)
Q Consensus 395 ~lp~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 474 (556)
.++ .|+||||+|||||||+|+++++...+.. .+++|+||+|+.+|++|++||++|.. + ++..++
T Consensus 97 ~~~---~~~vlia~GtGiaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~----~------~~~~~~ 160 (218)
T cd06196 97 EYK---GPGVFIAGGAGITPFIAILRDLAAKGKL---EGNTLIFANKTEKDIILKDELEKMLG----L------KFINVV 160 (218)
T ss_pred Eec---CceEEEecCCCcChHHHHHHHHHhCCCC---ceEEEEEecCCHHHHhhHHHHHHhhc----c------eEEEEE
Confidence 753 5899999999999999999999875433 67999999999999999999999853 4 667788
Q ss_pred ecCCCCccchhhhHHHcHHHHHHhHcC-CCEEEEeCCCCccHHHHHHHHHHH
Q 008731 475 SRKQPQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 475 Sr~~~~k~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
||++. ..|.+..+.+ +.+.+++.. ++.+|+|||+ .|++++.+.|.+.
T Consensus 161 s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp~-~m~~~~~~~l~~~ 208 (218)
T cd06196 161 TDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGPP-PMEEAINGALKEL 208 (218)
T ss_pred cCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 88654 2333333321 222233333 5789999998 9999999888664
No 47
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.90 E-value=1.2e-23 Score=209.40 Aligned_cols=179 Identities=19% Similarity=0.320 Sum_probs=140.5
Q ss_pred CchhHHHhhcC--C-CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCceEEEEeecCCC
Q 008731 319 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSL 394 (556)
Q Consensus 319 ~p~~~l~~~lp--~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F 394 (556)
.|+|++...+| . ..+|+|||+|.|....+.++|+|+. ..+|.+|.||++ +++ |++|.+.+|.|.|
T Consensus 47 ~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~f 115 (243)
T cd06216 47 RAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKA---------QPDGLVSNWLVNHLAP--GDVVELSQPQGDF 115 (243)
T ss_pred CCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEE---------cCCCcchhHHHhcCCC--CCEEEEECCceee
Confidence 46777666554 2 3579999999985124789999954 345999999985 999 9999999999999
Q ss_pred CCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEE
Q 008731 395 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 473 (556)
Q Consensus 395 ~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 473 (556)
.++ +..+++||||+||||||++|++++....... .+++|+||+|+.+|.+|.+||+++.+.++++ ++++.
T Consensus 116 ~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~~~---~~i~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~ 186 (243)
T cd06216 116 VLPDPLPPRLLLIAAGSGITPVMSMLRTLLARGPT---ADVVLLYYARTREDVIFADELRALAAQHPNL------RLHLL 186 (243)
T ss_pred ecCCCCCCCEEEEecCccHhHHHHHHHHHHhcCCC---CCEEEEEEcCChhhhHHHHHHHHHHHhCCCe------EEEEE
Confidence 988 5478999999999999999999998775433 6899999999999999999999998654777 78888
Q ss_pred EecCCCCccchhhhHHHcHHHHHHhHc--CCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 474 FSRKQPQKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 474 ~Sr~~~~k~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+|++ ..++++.... +.+... ++..+|+||++ .|.+++++.|++.
T Consensus 187 ~s~~-~~~g~~~~~~------l~~~~~~~~~~~vyvcGp~-~m~~~~~~~l~~~ 232 (243)
T cd06216 187 YTRE-ELDGRLSAAH------LDAVVPDLADRQVYACGPP-GFLDAAEELLEAA 232 (243)
T ss_pred EcCC-ccCCCCCHHH------HHHhccCcccCeEEEECCH-HHHHHHHHHHHHC
Confidence 8876 2344443221 112222 25799999998 9999999888663
No 48
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.90 E-value=1.7e-23 Score=209.53 Aligned_cols=178 Identities=20% Similarity=0.279 Sum_probs=143.7
Q ss_pred CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCC-CCCC
Q 008731 319 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPRP 397 (556)
Q Consensus 319 ~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~lp 397 (556)
.|+|++...+|....|+|||+|+|.. .+.++|+|+ +.|..|+||.++++ |++|.+.+|.|. |.++
T Consensus 29 ~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik-----------~~G~~S~~L~~l~~--G~~v~i~gP~G~~f~~~ 94 (253)
T cd06221 29 KPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIR-----------RVGRVTEALHELKP--GDTVGLRGPFGNGFPVE 94 (253)
T ss_pred CCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEE-----------eCChhhHHHHcCCC--CCEEEEECCcCCCcccc
Confidence 47888777777656699999999953 478999984 24889999999999 999999999998 6555
Q ss_pred C-CCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 398 P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 398 ~-~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
. ..+|+||||+||||||+++|+++....... ..+++|+|+.|+.+|++|+++|+++.+. .++ ++.+++|+
T Consensus 95 ~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~--~~~i~Li~~~r~~~~~~~~~~L~~l~~~-~~~------~~~~~~s~ 165 (253)
T cd06221 95 EMKGKDLLLVAGGLGLAPLRSLINYILDNRED--YGKVTLLYGARTPEDLLFKEELKEWAKR-SDV------EVILTVDR 165 (253)
T ss_pred cccCCeEEEEccccchhHHHHHHHHHHhcccc--CCcEEEEEecCChHHcchHHHHHHHHhc-CCe------EEEEEeCC
Confidence 3 678999999999999999999999875321 2679999999999999999999999987 778 78888887
Q ss_pred CCC----CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 477 KQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 477 ~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+.+ ..+++++.+.+... ...+..||+|||+ .|++++.+.|.+.
T Consensus 166 ~~~~~~~~~g~v~~~l~~~~~-----~~~~~~vyicGp~-~mv~~~~~~L~~~ 212 (253)
T cd06221 166 AEEGWTGNVGLVTDLLPELTL-----DPDNTVAIVCGPP-IMMRFVAKELLKL 212 (253)
T ss_pred CCCCccCCccccchhHHhcCC-----CcCCcEEEEECCH-HHHHHHHHHHHHc
Confidence 543 34667665544210 0147899999998 9999999888765
No 49
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.89 E-value=1.9e-23 Score=219.27 Aligned_cols=184 Identities=16% Similarity=0.281 Sum_probs=139.3
Q ss_pred CchhHHHhhcC---CCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCCC
Q 008731 319 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 394 (556)
Q Consensus 319 ~p~~~l~~~lp---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F 394 (556)
.|+|++...++ ....|+|||+|.|. .+.++|+|+. ...|.+|+||. ++++ |++|.+.+|.|.|
T Consensus 34 ~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~---------~~~G~~S~~l~~~l~~--Gd~v~v~gP~G~f 100 (352)
T TIGR02160 34 APGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKK---------IPGGLFSTWANDEIRP--GDTLEVMAPQGLF 100 (352)
T ss_pred CCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEE---------eCCCcchHHHHhcCCC--CCEEEEeCCceee
Confidence 47777766664 23469999999984 4789999954 34699999996 7999 9999999999999
Q ss_pred CCC-C--CCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCC-CccccCCCcE
Q 008731 395 PRP-P--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGF 470 (556)
Q Consensus 395 ~lp-~--~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~ 470 (556)
.++ . ..+++||||+|||||||+||+++....... .+++|+||+|+.+|++|.+||+++.+.++ ++ ++
T Consensus 101 ~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~------~~ 171 (352)
T TIGR02160 101 TPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEPR---STFTLVYGNRRTASVMFAEELADLKDKHPQRF------HL 171 (352)
T ss_pred ecCCCccccccEEEEeccccHhHHHHHHHHHHhcCCC---ceEEEEEEeCCHHHHHHHHHHHHHHHhCcCcE------EE
Confidence 876 3 247999999999999999999998775443 68999999999999999999999987644 47 78
Q ss_pred EEEEecCCCCccchhhhHHH-cHHHHH-HhH--cCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 471 YVAFSRKQPQKVYVQHKMLE-QSQRIW-NLL--LSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 471 ~~a~Sr~~~~k~yVqd~l~~-~~~~l~-~~l--~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+.++|+++....+.+..+.. ....+. ++. ..+..+|+|||+ .|++++++.|.+.
T Consensus 172 ~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~~ 229 (352)
T TIGR02160 172 AHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQ-AMVDDAEQALTGL 229 (352)
T ss_pred EEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 88899865422222222211 111111 111 125789999998 9999999998765
No 50
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.89 E-value=4.3e-23 Score=205.72 Aligned_cols=170 Identities=22% Similarity=0.284 Sum_probs=134.0
Q ss_pred CchhHHHhhcCC----CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCC-
Q 008731 319 MPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS- 393 (556)
Q Consensus 319 ~p~~~l~~~lp~----~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~- 393 (556)
.|+|++...+|. ...|+|||+|.|.. .+.++|+|+. .|.+|+||.++++ |++|.+.+|.|.
T Consensus 26 ~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~-----------~G~~s~~l~~l~~--Gd~v~i~gP~G~~ 91 (246)
T cd06218 26 KPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKV-----------VGKGTRLLSELKA--GDELDVLGPLGNG 91 (246)
T ss_pred CCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEE-----------ECcchHHHhcCCC--CCEEEEEecCCCC
Confidence 466766665553 46799999998853 4789999843 3788999999999 999999999986
Q ss_pred CCCCCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEE
Q 008731 394 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 473 (556)
Q Consensus 394 F~lp~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 473 (556)
|.+++...++||||+|||||||++++++..... .+++|||++|+.+|.+|++||+++... +.+
T Consensus 92 ~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~eL~~l~~~-----------~~~- 154 (246)
T cd06218 92 FDLPDDDGKVLLVGGGIGIAPLLFLAKQLAERG-----IKVTVLLGFRSADDLFLVEEFEALGAE-----------VYV- 154 (246)
T ss_pred cCCCCCCCcEEEEecccCHHHHHHHHHHHHhcC-----CceEEEEEccchhhhhhHHHHHhhCCc-----------EEE-
Confidence 777665789999999999999999999987632 679999999999999999999998432 222
Q ss_pred EecCC--CCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 474 FSRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 474 ~Sr~~--~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
++++. ..++|+++.+.+..... .+..||+|||+ .|++++++.|.+.
T Consensus 155 ~~~~~~~~~~g~v~~~l~~~~~~~-----~~~~vyiCGp~-~mv~~~~~~L~~~ 202 (246)
T cd06218 155 ATDDGSAGTKGFVTDLLKELLAEA-----RPDVVYACGPE-PMLKAVAELAAER 202 (246)
T ss_pred EcCCCCCCcceehHHHHHHHhhcc-----CCCEEEEECCH-HHHHHHHHHHHhc
Confidence 23332 24578888776543221 47899999998 9999999998764
No 51
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.89 E-value=2.6e-23 Score=205.56 Aligned_cols=179 Identities=19% Similarity=0.296 Sum_probs=140.4
Q ss_pred CchhHHHhhcC--CC--CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCceEEEEeecCC
Q 008731 319 MPIDWLVQLVP--PL--KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGS 393 (556)
Q Consensus 319 ~p~~~l~~~lp--~~--~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~ 393 (556)
.|+|++...+| .. ..|+|||+|.|.. .+.++|+|.. ...|.+|.||.+ +++ |+.|.+.+|.|.
T Consensus 32 ~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~---------~~~G~~s~~l~~~l~~--Gd~v~i~gP~G~ 99 (235)
T cd06217 32 LAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKR---------VPGGEVSPYLHDEVKV--GDLLEVRGPIGT 99 (235)
T ss_pred CCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEeCCcee
Confidence 46777766665 22 3499999999854 3689999854 346899999985 899 999999999999
Q ss_pred CCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEE
Q 008731 394 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 472 (556)
Q Consensus 394 F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~ 472 (556)
|.++ ....+++|||+||||||+++++++....... .+++|+||+|+.+|++|++||.++.+.++++ +++.
T Consensus 100 ~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~~---~~i~l~~~~r~~~~~~~~~el~~~~~~~~~~------~~~~ 170 (235)
T cd06217 100 FTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGWP---VPFRLLYSARTAEDVIFRDELEQLARRHPNL------HVTE 170 (235)
T ss_pred eEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCCC---ceEEEEEecCCHHHhhHHHHHHHHHHHCCCe------EEEE
Confidence 8876 4468999999999999999999998876544 7899999999999999999999998865677 7888
Q ss_pred EEecCCC-----CccchhhhHHHcHHHHHHhH--cCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 473 AFSRKQP-----QKVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 473 a~Sr~~~-----~k~yVqd~l~~~~~~l~~~l--~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
++||+.. .++++.+.+.+ +.+ ..+..+|+|||+ .|.+++.+.|.+.
T Consensus 171 ~~s~~~~~~~~~~~g~~~~~~l~------~~~~~~~~~~v~icGp~-~m~~~v~~~l~~~ 223 (235)
T cd06217 171 ALTRAAPADWLGPAGRITADLIA------ELVPPLAGRRVYVCGPP-AFVEAATRLLLEL 223 (235)
T ss_pred EeCCCCCCCcCCcCcEeCHHHHH------hhCCCccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 8888622 23444332211 111 147899999998 9999999888764
No 52
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.89 E-value=6.7e-23 Score=200.23 Aligned_cols=174 Identities=18% Similarity=0.281 Sum_probs=136.8
Q ss_pred CchhHHHhhcCC---CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCCC
Q 008731 319 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 394 (556)
Q Consensus 319 ~p~~~l~~~lp~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F 394 (556)
.|+|++...+|. ...|+|||+|.|.. .+.++|+|+. .|.+|++|. ++++ |+.|.+.+|.|.|
T Consensus 24 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~-----------~G~~t~~l~~~l~~--G~~v~i~gP~G~~ 89 (216)
T cd06198 24 RAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKA-----------LGDYTRRLAERLKP--GTRVTVEGPYGRF 89 (216)
T ss_pred CCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEe-----------CChHHHHHHHhCCC--CCEEEEECCCCCC
Confidence 478877766663 57899999999853 3699999842 478999998 8999 9999999999999
Q ss_pred CCCCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEE
Q 008731 395 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 474 (556)
Q Consensus 395 ~lp~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 474 (556)
.++....+++|||+||||||+++++++....... .+++|+||+|+.+|++|.++|+++... .++ ++++..
T Consensus 90 ~~~~~~~~~vlia~GtGiap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~-~~~------~~~~~~ 159 (216)
T cd06198 90 TFDDRRARQIWIAGGIGITPFLALLEALAARGDA---RPVTLFYCVRDPEDAVFLDELRALAAA-AGV------VLHVID 159 (216)
T ss_pred cccccCceEEEEccccCHHHHHHHHHHHHhcCCC---ceEEEEEEECCHHHhhhHHHHHHHHHh-cCe------EEEEEe
Confidence 9883378999999999999999999998876443 689999999999999999999999887 366 677666
Q ss_pred ecCCCCccchhhhHHHcHHHHHHhH--cCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 475 SRKQPQKVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 475 Sr~~~~k~yVqd~l~~~~~~l~~~l--~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
++.+. .......+ .+.. ..+..+|+|||+ .|.+++++.|.+.
T Consensus 160 ~~~~~-~~~~~~~~-------~~~~~~~~~~~vyicGp~-~m~~~v~~~l~~~ 203 (216)
T cd06198 160 SPSDG-RLTLEQLV-------RALVPDLADADVWFCGPP-GMADALEKGLRAL 203 (216)
T ss_pred CCCCc-ccchhhhh-------hhcCCCcCCCeEEEECcH-HHHHHHHHHHHHc
Confidence 65432 11222211 0111 237899999998 9999999888763
No 53
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.89 E-value=7.1e-23 Score=203.34 Aligned_cols=181 Identities=22% Similarity=0.321 Sum_probs=139.1
Q ss_pred CchhHHHhhcCC---CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCCC
Q 008731 319 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 394 (556)
Q Consensus 319 ~p~~~l~~~lp~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F 394 (556)
.|+|++...+|. ..+|+|||+|.+.. +.++|+|.+ ...|.+|.||. ++++ |+++.+.+|.|.|
T Consensus 34 ~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~~ 100 (241)
T cd06214 34 RPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKR---------VPGGRFSNWANDELKA--GDTLEVMPPAGRF 100 (241)
T ss_pred CCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEE---------cCCCccchhHHhccCC--CCEEEEeCCcccc
Confidence 467777666652 46899999998864 479998854 35699999997 7999 9999999999999
Q ss_pred CCC-C-CCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCC-CccccCCCcEE
Q 008731 395 PRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFY 471 (556)
Q Consensus 395 ~lp-~-~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~~ 471 (556)
.++ + ...++||||+|||||||+++++++...... .+++|+||+|+.+|++|.+||+++.+..+ ++ ++.
T Consensus 101 ~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~------~~~ 171 (241)
T cd06214 101 TLPPLPGARHYVLFAAGSGITPVLSILKTALAREPA---SRVTLVYGNRTEASVIFREELADLKARYPDRL------TVI 171 (241)
T ss_pred ccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCCC---CcEEEEEEeCCHHHhhHHHHHHHHHHhCcCce------EEE
Confidence 888 4 478999999999999999999998876433 78999999999999999999999976533 66 677
Q ss_pred EEEecCCCC----ccchhhhHHHcHHHHH-HhH--cCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 472 VAFSRKQPQ----KVYVQHKMLEQSQRIW-NLL--LSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 472 ~a~Sr~~~~----k~yVqd~l~~~~~~l~-~~l--~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
.++|+++.. .+.+...+. .... +.. .++..||+|||+ .|++.+.+.|++.
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~v~icGp~-~mv~~v~~~l~~~ 228 (241)
T cd06214 172 HVLSREQGDPDLLRGRLDAAKL---NALLKNLLDATEFDEAFLCGPE-PMMDAVEAALLEL 228 (241)
T ss_pred EEecCCCCCcccccCccCHHHH---HHhhhhhcccccCcEEEEECCH-HHHHHHHHHHHHc
Confidence 788876542 122322111 1111 111 236899999998 8999999887663
No 54
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.89 E-value=6.6e-23 Score=206.31 Aligned_cols=173 Identities=19% Similarity=0.239 Sum_probs=135.7
Q ss_pred CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCC-CCCC
Q 008731 319 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPRP 397 (556)
Q Consensus 319 ~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~lp 397 (556)
.|+|++...+|...+|+|||++.+ .+.++|+|+ +.|.+|+||.++++ |++|.+.+|.|. |.++
T Consensus 34 ~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik-----------~~G~~S~~L~~l~~--Gd~v~v~gP~G~~f~~~ 97 (263)
T PRK08221 34 KPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIR-----------RVGKVTDEIFNLKE--GDKLFLRGPYGNGFPVD 97 (263)
T ss_pred CCCceEEEEeCCCCcceeeccCCC---CCEEEEEEE-----------eCCchhhHHHhCCC--CCEEEEECCCCCCcccC
Confidence 578887777887667999999875 378999984 23999999999999 999999999987 7776
Q ss_pred -CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 398 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 398 -~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
...+|+||||+|||||||+|++++....... ..+++||||+|+.+|++|++||++|.+. + .+.+++++
T Consensus 98 ~~~~~~~llIAgGtGItP~~sil~~~~~~~~~--~~~v~L~~g~r~~~~l~~~~el~~~~~~---~------~~~~~~~~ 166 (263)
T PRK08221 98 TYKGKELIVVAGGTGVAPVKGLMRYFYENPQE--IKSLDLILGFKNPDDILFKEDLKRWREK---I------NLILTLDE 166 (263)
T ss_pred ccCCccEEEEcccccHHHHHHHHHHHHhCccc--CceEEEEEecCCHHHhhHHHHHHHHhhc---C------cEEEEecC
Confidence 5568999999999999999999998764321 2589999999999999999999999875 2 34455665
Q ss_pred CCC----CccchhhhHHHcHHHHHHhHc--CCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 477 KQP----QKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 477 ~~~----~k~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
.+. ..+++++.+.+. .+. .+..+|+|||+ .|++++.+.|.+.
T Consensus 167 ~~~~~~~~~G~v~~~l~~~------~~~~~~~~~vylCGp~-~mv~~~~~~L~~~ 214 (263)
T PRK08221 167 GEEGYRGNVGLVTKYIPEL------TLKDIDNMQVIVVGPP-IMMKFTVLEFLKR 214 (263)
T ss_pred CCCCCccCccccChhhHhc------cCCCcCCeEEEEECCH-HHHHHHHHHHHHc
Confidence 432 245665544331 011 36789999998 9999999888654
No 55
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.88 E-value=1.2e-22 Score=203.29 Aligned_cols=178 Identities=19% Similarity=0.253 Sum_probs=136.6
Q ss_pred CchhHHHhhcCCC---CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCCC
Q 008731 319 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 394 (556)
Q Consensus 319 ~p~~~l~~~lp~~---~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F 394 (556)
-|+|++...++.- ..|.|||+|+|.. ++.+.|+|.+ ...|..|+||+ ++++ ||+|.+..|.|.|
T Consensus 36 ~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~---------~~~G~~S~~Lh~~lk~--Gd~l~v~~P~G~F 103 (266)
T COG1018 36 EPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKR---------EDGGGGSNWLHDHLKV--GDTLEVSAPAGDF 103 (266)
T ss_pred CCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEE---------eCCCcccHHHHhcCCC--CCEEEEecCCCCc
Confidence 4778877777754 7899999999975 3588888843 34599999999 8999 9999999999999
Q ss_pred CCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEE
Q 008731 395 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 473 (556)
Q Consensus 395 ~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 473 (556)
.++ .+..|++|||+|+|||||+||+++....+. .++.|+|++|+.++..|++| +.+...+++.. .+...
T Consensus 104 ~l~~~~~~~~llla~G~GITP~lSml~~~~~~~~----~~v~l~h~~R~~~~~af~de-~~l~~~~~~~~-----~~~~~ 173 (266)
T COG1018 104 VLDDLPERKLLLLAGGIGITPFLSMLRTLLDRGP----ADVVLVHAARTPADLAFRDE-LELAAELPNAL-----LLGLY 173 (266)
T ss_pred cCCCCCCCcEEEEeccccHhHHHHHHHHHHHhCC----CCEEEEEecCChhhcchhhH-HHHHhhCCCCe-----eEEEE
Confidence 998 566799999999999999999999887642 46999999999999999999 88877656542 44444
Q ss_pred EecCCCCccch-hhhHHHcHHHHHHhHcC-CCEEEEeCCCCccHHHHHHHHHHHHH
Q 008731 474 FSRKQPQKVYV-QHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVS 527 (556)
Q Consensus 474 ~Sr~~~~k~yV-qd~l~~~~~~l~~~l~~-~~~iyvCG~~~~m~~~v~~~L~~i~~ 527 (556)
+++... .+|+ ..++.. .... +..+|+|||. +|.++|+..|.++..
T Consensus 174 ~~~~~~-~g~~~~~~l~~-------~~~~~~r~~y~CGp~-~fm~av~~~l~~~g~ 220 (266)
T COG1018 174 TERGKL-QGRIDVSRLLS-------AAPDGGREVYLCGPG-PFMQAVRLALEALGV 220 (266)
T ss_pred EecCCc-cccccHHHHhc-------cCCCCCCEEEEECCH-HHHHHHHHHHHHcCC
Confidence 432221 2222 111211 1222 3899999998 999999999877643
No 56
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.88 E-value=1.2e-22 Score=200.55 Aligned_cols=179 Identities=18% Similarity=0.219 Sum_probs=140.6
Q ss_pred CchhHHHhhcCC---CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCC
Q 008731 319 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 395 (556)
Q Consensus 319 ~p~~~l~~~lp~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~ 395 (556)
.|+|++...+|. ...|+|||+|.+.. .+.++|+|.. ...|.+|.||+++++ |++|.+.+|.|.|.
T Consensus 30 ~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~---------~~~G~~s~~l~~~~~--G~~v~i~gP~G~~~ 97 (234)
T cd06183 30 PVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKI---------YPGGKMSQYLHSLKP--GDTVEIRGPFGKFE 97 (234)
T ss_pred CcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEE---------CCCCcchhHHhcCCC--CCEEEEECCcccee
Confidence 577777777764 46899999999854 4689999853 346999999999999 99999999999998
Q ss_pred CC-CCC-CCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcC-CCccccCCCcEEE
Q 008731 396 RP-PPS-VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGFYV 472 (556)
Q Consensus 396 lp-~~~-~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~~~~~~~~~~ 472 (556)
+. ... .++||||+||||||+++++++....... ..+++|+||+|+.++.+|.+||+++.+.+ +++ ++++
T Consensus 98 ~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~--~~~i~l~~~~r~~~~~~~~~~l~~~~~~~~~~~------~~~~ 169 (234)
T cd06183 98 YKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPED--KTKISLLYANRTEEDILLREELDELAKKHPDRF------KVHY 169 (234)
T ss_pred ecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCc--CcEEEEEEecCCHHHhhhHHHHHHHHHhCcccE------EEEE
Confidence 86 444 7999999999999999999998765311 26899999999999999999999998752 567 7788
Q ss_pred EEecCCCC----ccchhhhHHHcHHHHHHhH----cCCCEEEEeCCCCccHH-HHHHHHHH
Q 008731 473 AFSRKQPQ----KVYVQHKMLEQSQRIWNLL----LSKASIYVAGSATKMPS-DVWSTFEE 524 (556)
Q Consensus 473 a~Sr~~~~----k~yVqd~l~~~~~~l~~~l----~~~~~iyvCG~~~~m~~-~v~~~L~~ 524 (556)
++|+.+.. .+++++.+... .+ ..+..+|+|||+ .|++ ++++.|.+
T Consensus 170 ~~~~~~~~~~~~~g~~~~~~l~~------~~~~~~~~~~~~~icGp~-~~~~~~~~~~l~~ 223 (234)
T cd06183 170 VLSRPPEGWKGGVGFITKEMIKE------HLPPPPSEDTLVLVCGPP-PMIEGAVKGLLKE 223 (234)
T ss_pred EEcCCCcCCccccceECHHHHHH------hCCCCCCCCeEEEEECCH-HHHHHHHHHHHHH
Confidence 88875432 45565433221 22 236789999998 9999 88888765
No 57
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.88 E-value=2.4e-22 Score=205.91 Aligned_cols=194 Identities=17% Similarity=0.136 Sum_probs=136.8
Q ss_pred CchhHHHhhcCC-------CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeec
Q 008731 319 MPIDWLVQLVPP-------LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQK 391 (556)
Q Consensus 319 ~p~~~l~~~lp~-------~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~ 391 (556)
.|+|++...++. ...|+||++|+|.. .+.++|+|+.+.-..+......|.+|+||+.+++ ||.|.+.+|.
T Consensus 65 ~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~-~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~ 141 (300)
T PTZ00319 65 PIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE-KGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKL--GDKIEMRGPV 141 (300)
T ss_pred ccceEEEEEEEeCCCCccceEEeeeccCCCccc-CCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCC--CCEEEEEccc
Confidence 366766655542 35799999999853 5789999965411111111246999999999999 9999999999
Q ss_pred CCCCCC-CC---------------CCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHh
Q 008731 392 GSLPRP-PP---------------SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSH 455 (556)
Q Consensus 392 g~F~lp-~~---------------~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~ 455 (556)
|.|.+. +. ..|++|||+|||||||++++++....... ..++.|+||+|+.+|++|.++|+++
T Consensus 142 G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~~--~~~i~liyg~r~~~dl~~~~eL~~~ 219 (300)
T PTZ00319 142 GKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKED--RTKVFLVYANQTEDDILLRKELDEA 219 (300)
T ss_pred eeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCCC--CceEEEEEecCCHHHhhHHHHHHHH
Confidence 998653 11 24899999999999999999998765322 1579999999999999999999996
Q ss_pred HhcCCCccccCCCcEEEEEecCCC-----CccchhhhHHHcH-HHHH-H-hHcCCCEEEEeCCCCccHH-HHHHHHHHH
Q 008731 456 SLNDGVFSEAKGGGFYVAFSRKQP-----QKVYVQHKMLEQS-QRIW-N-LLLSKASIYVAGSATKMPS-DVWSTFEEI 525 (556)
Q Consensus 456 ~~~~g~l~~~~~~~~~~a~Sr~~~-----~k~yVqd~l~~~~-~~l~-~-~l~~~~~iyvCG~~~~m~~-~v~~~L~~i 525 (556)
.+. +++ +++.+.|+++. ..++|...+.+.. ...- + ...++..+|+|||+ +|++ .+.+.|.+.
T Consensus 220 ~~~-~~~------~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~vyiCGp~-~mv~~~~~~~L~~~ 290 (300)
T PTZ00319 220 AKD-PRF------HVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDPQNSGIKKVMALMCGPP-PMLQMAVKPNLEKI 290 (300)
T ss_pred hhC-CCE------EEEEEECCCCCCCcccccceeCHHHHHhhcCCccccccccCCeEEEEECCH-HHHHHHHHHHHHHc
Confidence 654 778 88888887432 2466665433221 1000 0 00024689999998 8887 466666543
No 58
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.88 E-value=2.5e-22 Score=206.96 Aligned_cols=165 Identities=18% Similarity=0.213 Sum_probs=127.1
Q ss_pred CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCCCC-CCCCCeEEEcCCC
Q 008731 332 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PPSVPLILIGPGT 410 (556)
Q Consensus 332 ~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~lp-~~~~piimIa~GT 410 (556)
..|+|||+|.|.. .+.++|+|+. ...|..|+||+++++ ||+|.+.+|.+.|.+. +..+|+||||+||
T Consensus 102 ~~R~YSiaS~p~~-~~~le~~IK~---------~~~G~~S~~L~~lk~--Gd~v~v~GP~f~~~~~~~~~~~lvlIAGGs 169 (325)
T PTZ00274 102 CQRFYTPVTANHT-KGYFDIIVKR---------KKDGLMTNHLFGMHV--GDKLLFRSVTFKIQYRPNRWKHVGMIAGGT 169 (325)
T ss_pred EEEeeecCCCCCC-CCeEEEEEEE---------cCCCcccHHHhcCCC--CCEEEEeCCeeecccCCCCCceEEEEeCCc
Confidence 4699999999954 4789999954 467999999999999 9999999987666554 4457999999999
Q ss_pred CchhhHHHHHHHHHhhCC--C-CCCCEEEEEcccCCCccccHHHHHHhHhcCC-CccccCCCcEEEEEecCCC------C
Q 008731 411 GCAPFRGFVEERAIQSSS--G-PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFYVAFSRKQP------Q 480 (556)
Q Consensus 411 GIAPf~s~lq~~~~~~~~--~-~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~~~a~Sr~~~------~ 480 (556)
|||||+||+++....... + ...+++|+||+|+.+|++|++||+++++.++ ++ +++.+.|+... .
T Consensus 170 GITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f------~v~~~ls~~~~~~~w~g~ 243 (325)
T PTZ00274 170 GFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRF------KVYYTIDQAVEPDKWNHF 243 (325)
T ss_pred chhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcE------EEEEEeCCCCcccCCCCC
Confidence 999999999998765321 0 1258999999999999999999999988655 57 78888886421 2
Q ss_pred ccchhhhHHHcHHHHHHhHc----CCCEEEEeCCCCccHHHHHHH
Q 008731 481 KVYVQHKMLEQSQRIWNLLL----SKASIYVAGSATKMPSDVWST 521 (556)
Q Consensus 481 k~yVqd~l~~~~~~l~~~l~----~~~~iyvCG~~~~m~~~v~~~ 521 (556)
.++|.+.+.. +.+. .+..+|+|||+ +|++.|...
T Consensus 244 ~G~V~~~ll~------~~~~~~~~~~~~vylCGPp-~Mm~av~~~ 281 (325)
T PTZ00274 244 LGYVTKEMVR------RTMPAPEEKKKIIMLCGPD-QLLNHVAGT 281 (325)
T ss_pred CCccCHHHHH------HhcCCCccCCcEEEEeCCH-HHHHHhcCC
Confidence 3555443311 1121 13579999998 999887544
No 59
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.88 E-value=1.9e-22 Score=202.75 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=134.1
Q ss_pred CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCC-CCCC
Q 008731 319 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPRP 397 (556)
Q Consensus 319 ~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~lp 397 (556)
.|+|++...+|...+|+|||+|.+ .+.++|+|+ +.|.+|++|+++++ |++|.+.+|.|. |.++
T Consensus 32 ~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk-----------~~G~~S~~L~~l~~--Gd~v~i~gP~G~~f~~~ 95 (261)
T TIGR02911 32 KPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIR-----------RVGKVTDEVFTLKE--GDNLFLRGPYGNGFDVD 95 (261)
T ss_pred CCCcEEEEEecCCCccceecCCCC---CCeEEEEEE-----------eCchhhHHHHcCCC--CCEEEEecCCCCCcccC
Confidence 578888777887778999999853 478999984 24899999999999 999999999997 7776
Q ss_pred -CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 398 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 398 -~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
...+|++|||+||||||+++++++....... ..+++|+||+|+.+|++|++||++|.+. -++ ..++++
T Consensus 96 ~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~--~~~v~L~~~~r~~~~~~~~~eL~~l~~~-~~~--------~~~~~~ 164 (261)
T TIGR02911 96 NYKHKELVVVAGGTGVAPVKGVVEYFVKNPKE--IKSLNLILGFKTPDDILFKEDIAEWKGN-INL--------TLTLDE 164 (261)
T ss_pred ccCCceEEEEecccCcHHHHHHHHHHHhCccc--CceEEEEEecCCHHHhhHHHHHHHHHhc-CcE--------EEEEcC
Confidence 5568999999999999999999987664321 2579999999999999999999999875 333 344444
Q ss_pred CCC----CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 477 KQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 477 ~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+.+ ..+++++.+.+.. + .. ..+.++|+|||+ .|.+++++.|.+.
T Consensus 165 ~~~~~~~~~g~v~~~l~~~~--~-~~-~~~~~v~lCGp~-~mv~~~~~~L~~~ 212 (261)
T TIGR02911 165 AEEDYKGNIGLVTKYIPELT--L-KD-IEEVQAIVVGPP-IMMKFTVQELLKK 212 (261)
T ss_pred CCCCCcCCeeccCHhHHhcc--C-CC-ccceEEEEECCH-HHHHHHHHHHHHc
Confidence 322 2355655443210 0 00 136789999998 9999998888664
No 60
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.88 E-value=3.4e-22 Score=194.41 Aligned_cols=170 Identities=15% Similarity=0.193 Sum_probs=132.7
Q ss_pred CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccC-ccchhhh-ccCCCCCceEEEEeecCCCCC
Q 008731 319 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTG-LCSVWLA-GLDPQQGIYIPAWFQKGSLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G-~~S~~L~-~l~~~~G~~v~v~~~~g~F~l 396 (556)
.|+|++...+|....|+|||+|.|.. .+.++|+|+.+ ..| .+|.||+ .+++ |++|.+.+|.|.|.+
T Consensus 27 ~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~---------~~g~~~s~~l~~~~~~--Gd~v~i~gP~g~f~~ 94 (211)
T cd06185 27 EPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLRE---------PASRGGSRYMHELLRV--GDELEVSAPRNLFPL 94 (211)
T ss_pred CCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEec---------cCCCchHHHHHhcCCC--CCEEEEcCCccCCcC
Confidence 47888877777777899999999853 47899998542 233 4799996 5899 999999999999988
Q ss_pred CCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 397 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 397 p~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
+....|+||||+||||||+++++++..... .++.|+||+|+.+|++|.++|+++. . ..+ .+.+++
T Consensus 95 ~~~~~~~v~ia~GtGiap~~~il~~~~~~~-----~~v~l~~~~r~~~~~~~~~~l~~~~-~-~~~--------~~~~~~ 159 (211)
T cd06185 95 DEAARRHLLIAGGIGITPILSMARALAARG-----ADFELHYAGRSREDAAFLDELAALP-G-DRV--------HLHFDD 159 (211)
T ss_pred CCCCCcEEEEeccchHhHHHHHHHHHHhCC-----CCEEEEEEeCCCcchhHHHHHhhhc-C-CcE--------EEEECC
Confidence 744689999999999999999999986532 5799999999999999999999987 2 334 445565
Q ss_pred CCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 477 KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 477 ~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+. ...++++.+.. +.++..+|+|||+ .|++++++.|.+.
T Consensus 160 ~~-~~~~~~~~~~~--------~~~~~~vyicGp~-~m~~~~~~~l~~~ 198 (211)
T cd06185 160 EG-GRLDLAALLAA--------PPAGTHVYVCGPE-GMMDAVRAAAAAL 198 (211)
T ss_pred CC-CccCHHHHhcc--------CCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 43 23444444432 1246899999998 9999999888664
No 61
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.86 E-value=1.3e-21 Score=195.69 Aligned_cols=165 Identities=21% Similarity=0.289 Sum_probs=130.8
Q ss_pred CchhHHHhhcCCC---CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCC-C
Q 008731 319 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-L 394 (556)
Q Consensus 319 ~p~~~l~~~lp~~---~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F 394 (556)
.|+|++...+|.. .+|+|||+|+| .+.++|+|.. .|..|+||.++++ |++|.+.+|.|. |
T Consensus 33 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~--G~~v~i~gP~G~~f 96 (250)
T PRK00054 33 KPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKE--GDELDIRGPLGNGF 96 (250)
T ss_pred CCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCC--CCEEEEEcccCCCC
Confidence 4677766666644 68999999998 3799999842 4889999999999 999999999986 8
Q ss_pred CCCCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEE
Q 008731 395 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 474 (556)
Q Consensus 395 ~lp~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 474 (556)
.++....|+||||+||||||+++++++....+ .++.|+|++|+.+|++|++||+++.+ + ++.
T Consensus 97 ~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~el~~~~~----~--------~~~- 158 (250)
T PRK00054 97 DLEEIGGKVLLVGGGIGVAPLYELAKELKKKG-----VEVTTVLGARTKDEVIFEEEFAKVGD----V--------YVT- 158 (250)
T ss_pred CCCCCCCeEEEEeccccHHHHHHHHHHHHHcC-----CcEEEEEEcCCHHHhhhHHHHHhcCC----E--------EEE-
Confidence 77655689999999999999999999987643 46999999999999999999998431 1 222
Q ss_pred ecCC--CCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 475 SRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 475 Sr~~--~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+++. ..++|+++.+.+.. .....||+|||+ .|++++.+.|.+.
T Consensus 159 ~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp~-~m~~~v~~~l~~~ 203 (250)
T PRK00054 159 TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGPE-IMMKKVVEILKEK 203 (250)
T ss_pred ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence 2222 24578888765431 235689999998 9999999988774
No 62
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.85 E-value=3e-21 Score=190.91 Aligned_cols=163 Identities=22% Similarity=0.293 Sum_probs=127.6
Q ss_pred CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCC-CCCC
Q 008731 319 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPRP 397 (556)
Q Consensus 319 ~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~lp 397 (556)
.|+|++...+|....|+|||+|+| +.++|+|+ +.|.+|+||.++++ |++|.+.+|.|. |.++
T Consensus 25 ~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~-----------~~G~~s~~L~~l~~--Gd~v~i~gP~G~~f~~~ 87 (233)
T cd06220 25 KPGQFVMVWVPGVDEIPMSLSYID----GPNSITVK-----------KVGEATSALHDLKE--GDKLGIRGPYGNGFELV 87 (233)
T ss_pred CCCceEEEEeCCCCcceeEEecCC----CeEEEEEE-----------ecChHHHHHHhcCC--CCEEEEECcCCCCccCC
Confidence 478887776776667999999998 68999883 24899999999999 999999999997 7765
Q ss_pred CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec-
Q 008731 398 PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR- 476 (556)
Q Consensus 398 ~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr- 476 (556)
.+|+||||+|||||||++++++.... .+++|+||+|+.+|++|++||+++ . ++.+..+.
T Consensus 88 --~~~~vliAgGtGitP~~sil~~~~~~------~~i~l~~~~r~~~d~~~~~eL~~~----~--------~~~~~~~~~ 147 (233)
T cd06220 88 --GGKVLLIGGGIGIAPLAPLAERLKKA------ADVTVLLGARTKEELLFLDRLRKS----D--------ELIVTTDDG 147 (233)
T ss_pred --CCeEEEEecCcChHHHHHHHHHHHhc------CCEEEEEecCChHHChhHHHHhhC----C--------cEEEEEeCC
Confidence 67999999999999999999988764 469999999999999999999982 2 22222221
Q ss_pred CCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 477 KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 477 ~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
.....+++++.+.+.. ......||+|||+ .|.+++.+.|.+.
T Consensus 148 ~~~~~g~~~~~l~~~~------~~~~~~vyicGp~-~m~~~~~~~L~~~ 189 (233)
T cd06220 148 SYGFKGFVTDLLKELD------LEEYDAIYVCGPE-IMMYKVLEILDER 189 (233)
T ss_pred CCcccceehHHHhhhc------ccCCCEEEEECCH-HHHHHHHHHHHhc
Confidence 1123567776554321 1235689999998 9999999888764
No 63
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.85 E-value=3.3e-21 Score=192.40 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=128.6
Q ss_pred CchhHHHhhcC-CCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceE-EEEeecCCCCC
Q 008731 319 MPIDWLVQLVP-PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp-~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~v~~~~g~F~l 396 (556)
.|+|++...++ ....|+|||+|.|.. .+.++|+|. +.|..|.+|.++++ |+++ .+.+|.|.|.+
T Consensus 28 ~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk-----------~~G~~t~~l~~l~~--G~~v~~i~gP~G~~~~ 93 (248)
T cd06219 28 KPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQ-----------VVGKSTRELATLEE--GDKIHDVVGPLGKPSE 93 (248)
T ss_pred CCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEE-----------eCCchHHHHHhcCC--CCEeeeeecCCCCCee
Confidence 47777666554 345699999998743 478999984 23888999999999 9999 69999998765
Q ss_pred CCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 397 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 397 p~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
.+...++||||+||||||+++++++....+ .++.|+||+|+.+|++|.+||+++.++ ++.+ ++
T Consensus 94 ~~~~~~~lliagG~GiaP~~~~l~~~~~~~-----~~v~l~~~~r~~~~~~~~~el~~l~~~-----------~~~~-~~ 156 (248)
T cd06219 94 IENYGTVVFVGGGVGIAPIYPIAKALKEAG-----NRVITIIGARTKDLVILEDEFRAVSDE-----------LIIT-TD 156 (248)
T ss_pred cCCCCeEEEEeCcccHHHHHHHHHHHHHcC-----CeEEEEEEcCCHHHhhhHHHHHhhcCe-----------EEEE-eC
Confidence 544679999999999999999999976542 579999999999999999999999643 2222 33
Q ss_pred CC--CCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHH
Q 008731 477 KQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 477 ~~--~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
+. ...+++++.+.+.... ......+|+|||+ .|++.+.+.|.+
T Consensus 157 ~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGP~-~m~~~~~~~l~~ 201 (248)
T cd06219 157 DGSYGEKGFVTDPLKELIES----GEKVDLVIAIGPP-IMMKAVSELTRP 201 (248)
T ss_pred CCCCCccccchHHHHHHHhc----cCCccEEEEECCH-HHHHHHHHHHHH
Confidence 32 1345676655432111 1234689999998 999999988764
No 64
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.85 E-value=6.1e-21 Score=184.11 Aligned_cols=185 Identities=19% Similarity=0.327 Sum_probs=150.1
Q ss_pred CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCCCCCCCCCeEEEcCCCC
Q 008731 332 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTG 411 (556)
Q Consensus 332 ~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~lp~~~~piimIa~GTG 411 (556)
.-|.||.||-|.+ -+.|-+-|++..-+......+.|.||+|+..|++ ||+|.|++|.|-|...+.+.+||+|++|.|
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKp--GDKvtisGPfGEfFaKdtdaemvFigGGAG 286 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGAG 286 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecC--CCeEEEeccchhhhhccCCCceEEEecCcC
Confidence 4689999999976 4788888887765554556789999999999999 999999999999888888999999999999
Q ss_pred chhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEecCCCC------ccchh
Q 008731 412 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ------KVYVQ 485 (556)
Q Consensus 412 IAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~------k~yVq 485 (556)
.||+||-+-..+.+..+ .+++.++||+|+..+.+|+|+.+++++.+++| +.++|.|.+.++ .+++.
T Consensus 287 mapmRSHIfDqL~rlhS--kRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF------~wH~aLSdplpEDnW~g~TgFih 358 (410)
T COG2871 287 MAPMRSHIFDQLKRLHS--KRKISFWYGARSLREMFYQEDFDQLQAENPNF------HWHLALSDPLPEDNWDGYTGFIH 358 (410)
T ss_pred cCchHHHHHHHHHhhcc--cceeeeeeccchHHHhHHHHHHHHHHhhCCCc------EEEEEecCCCCcCCcccchhHHH
Confidence 99999988877765433 28899999999999999999999999988999 999999987653 23444
Q ss_pred hhHHHcHHHHHHhH-cCCCEEEEeCCCCccHHHHHHHHHHHHHHhC
Q 008731 486 HKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKEG 530 (556)
Q Consensus 486 d~l~~~~~~l~~~l-~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~ 530 (556)
..+-++ .+.++- +++..+|+|||+ .|..+|.+.|.+...+..
T Consensus 359 nv~~en--~Lk~h~aPEDceyYmCGPp-~mNasvikmL~dlGVE~e 401 (410)
T COG2871 359 NVLYEN--YLKDHEAPEDCEYYMCGPP-LMNASVIKMLKDLGVERE 401 (410)
T ss_pred HHHHhh--hhhcCCCchheeEEeeCcc-hhhHHHHHHHHhcCcccc
Confidence 444332 121221 238999999999 999999988888766543
No 65
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.84 E-value=4.5e-21 Score=194.85 Aligned_cols=171 Identities=16% Similarity=0.157 Sum_probs=129.4
Q ss_pred CchhHHHhhcCC-CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceE-EEEeecCCCCC
Q 008731 319 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~v~~~~g~F~l 396 (556)
.|+|++...++. ...|+|||+|.+.. .+.++|+|.+ .|..|.+|+++++ |++| .+.+|.|+|..
T Consensus 29 ~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~-----------~G~~T~~L~~l~~--Gd~v~~i~GP~G~~~~ 94 (281)
T PRK06222 29 KPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQA-----------VGKSTRKLAELKE--GDSILDVVGPLGKPSE 94 (281)
T ss_pred CCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEe-----------CCcHHHHHhcCCC--CCEEeeEEcCCCCCcc
Confidence 478877766654 34689999998743 4789999843 4899999999999 9999 69999998765
Q ss_pred CCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 397 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 397 p~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
++..+++||||+|+||||+++++++....+ .++.|+||.|+.+|++|.+||+++... +++ .+.
T Consensus 95 ~~~~~~~llIaGGiGiaPl~~l~~~l~~~~-----~~v~l~~g~r~~~d~~~~~el~~~~~~-----------~~v-~~~ 157 (281)
T PRK06222 95 IEKFGTVVCVGGGVGIAPVYPIAKALKEAG-----NKVITIIGARNKDLLILEDEMKAVSDE-----------LYV-TTD 157 (281)
T ss_pred cCCCCeEEEEeCcCcHHHHHHHHHHHHHCC-----CeEEEEEecCCHHHhhcHHHHHhhCCe-----------EEE-EcC
Confidence 543579999999999999999999876532 469999999999999999999988643 122 233
Q ss_pred CCC--CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 477 KQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 477 ~~~--~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
++. .+++|++.+.+...+ ..+...||+|||+ +|++++.+.+.+.
T Consensus 158 d~~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP~-~M~~~v~~~l~~~ 203 (281)
T PRK06222 158 DGSYGRKGFVTDVLKELLES----GKKVDRVVAIGPV-IMMKFVAELTKPY 203 (281)
T ss_pred CCCcCcccchHHHHHHHhhc----CCCCcEEEEECCH-HHHHHHHHHHHhc
Confidence 321 356777655432111 1114679999998 9999999888654
No 66
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.84 E-value=1.2e-20 Score=188.49 Aligned_cols=177 Identities=21% Similarity=0.280 Sum_probs=143.7
Q ss_pred CCchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCCCC
Q 008731 318 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP 397 (556)
Q Consensus 318 ~~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~lp 397 (556)
-.|+|++...+|....|+|||+|.+.. .+.++|.|++ ...|.+|.++..+++ |+.|.+.+|.|++.+.
T Consensus 36 ~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~---------~~~G~~T~~i~~~k~--gd~i~v~GP~G~~~~~ 103 (252)
T COG0543 36 FKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRV---------YEVGKVTKYIFGLKE--GDKIRVRGPLGNGFLR 103 (252)
T ss_pred cCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEE---------EeCChHHHHHhhccC--CCEEEEEcCCCCCccc
Confidence 368999999999999999999999964 5667777754 357999999999999 9999999999987666
Q ss_pred -CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 398 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 398 -~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
+..+|+++||+|||+||+++++++....+. ..+++++||.|+++|+++.+||+++... +++.+.+.
T Consensus 104 ~~~~~~vlliagGtG~aPl~~i~~~~~~~~~---~~~V~~~~G~~~~~dl~~~~el~~~~~~----------~~~~~~~~ 170 (252)
T COG0543 104 EKIGKPVLLIAGGTGIAPLYAIAKELKEKGD---ANKVTLLYGARTAKDLLLLDELEELAEK----------EVHPVTDD 170 (252)
T ss_pred cccCCcEEEEecccCHhHHHHHHHHHHhcCC---CceEEEEEeccChhhcccHHHHHHhhcC----------cEEEEECC
Confidence 677889999999999999999999988652 2689999999999999999999999864 23444441
Q ss_pred -CCCCccch-hhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHH
Q 008731 477 -KQPQKVYV-QHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV 526 (556)
Q Consensus 477 -~~~~k~yV-qd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~ 526 (556)
....+++| ++.+.+.... +...+|+|||+ .|.+.+.+.+.+-.
T Consensus 171 ~~~G~~G~v~~~~~~~~~~~------~~~~v~~cGp~-~M~~~v~~~~~~~g 215 (252)
T COG0543 171 GWKGRKGFVTTDVLKELLDL------EVDDVYICGPP-AMVKAVREKLKEYG 215 (252)
T ss_pred CCCccCcceeHHHHhhhccc------cCCEEEEECCH-HHHHHHHHHHHhcC
Confidence 12257888 6766553211 47899999999 99999888777653
No 67
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.84 E-value=1e-20 Score=188.22 Aligned_cols=170 Identities=17% Similarity=0.159 Sum_probs=128.4
Q ss_pred CchhHHHhhcC---CCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCC
Q 008731 319 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 395 (556)
Q Consensus 319 ~p~~~l~~~lp---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~ 395 (556)
.|+|++...+| ....|+|||+|.+.. .+.++|+|.. .|..|+||.++++ |++|.+.+|.|.|.
T Consensus 26 ~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~--G~~l~i~gP~G~~~ 91 (243)
T cd06192 26 RPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKP--GEKLDVMGPLGNGF 91 (243)
T ss_pred CCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCC--CCEEEEEccCCCCC
Confidence 46777666663 456899999999853 4789999842 4889999999999 99999999999876
Q ss_pred CC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEE
Q 008731 396 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 474 (556)
Q Consensus 396 lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 474 (556)
+. +...+++|||+|||||||++++++..... .+++|+||+|+.+|.+|.+||+++. . .+ ...
T Consensus 92 ~~~~~~~~~lliagGtGiap~~~~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~el~~~~-~----------~~-~~~ 154 (243)
T cd06192 92 EGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG-----NKVTVLAGAKKAKEEFLDEYFELPA-D----------VE-IWT 154 (243)
T ss_pred ccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC-----CeEEEEEecCcHHHHHHHHHHHhhc-C----------eE-EEE
Confidence 55 44689999999999999999999987642 5799999999999999999998872 1 12 222
Q ss_pred ecCCC--CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHH
Q 008731 475 SRKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV 526 (556)
Q Consensus 475 Sr~~~--~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~ 526 (556)
++++. ..+++++... . .. ...+..+|+|||+ .|++++++.|.+..
T Consensus 155 ~~~~~~~~~g~v~~~~~----~-~~-~~~~~~v~icGp~-~mv~~~~~~l~~~g 201 (243)
T cd06192 155 TDDGELGLEGKVTDSDK----P-IP-LEDVDRIIVAGSD-IMMKAVVEALDEWL 201 (243)
T ss_pred ecCCCCccceeechhhh----h-hh-cccCCEEEEECCH-HHHHHHHHHHHhhc
Confidence 33321 2345544311 0 11 1235689999998 99999999988764
No 68
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.83 E-value=1.3e-20 Score=184.67 Aligned_cols=144 Identities=19% Similarity=0.303 Sum_probs=110.6
Q ss_pred CccccccCCCCCCC--CCEEEEEEEEEEeeCCCCCCccCccchhhhccCCC---CCceEEEEeecCCCCCCC----CCCC
Q 008731 332 KTRAFSISSSPLAH--PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQ---QGIYIPAWFQKGSLPRPP----PSVP 402 (556)
Q Consensus 332 ~pR~YSIaSsp~~~--~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~---~G~~v~v~~~~g~F~lp~----~~~p 402 (556)
..|+|||||+|... .+.++|+|+. .|.+|+||.++... .|+.|.+.+|.|.|.++. ...+
T Consensus 59 ~~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~~~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~ 127 (220)
T cd06197 59 FVRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERK 127 (220)
T ss_pred ceeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHHhhhcccCCCceEEEEecCCcccCCcccccCCce
Confidence 35999999999654 2789998842 39999999754321 289999999999998862 3579
Q ss_pred eEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEecCCCCcc
Q 008731 403 LILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKV 482 (556)
Q Consensus 403 iimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~ 482 (556)
+||||+|||||||++++++....... ..++.|+||+|+.+|++|.+||.++... . . .... ++.
T Consensus 128 illIagG~GItP~~sil~~l~~~~~~--~~~v~l~~~~r~~~~~~~~~el~~~~~~-~-~------~~~~-~~~------ 190 (220)
T cd06197 128 MVWIAGGVGITPFLAMLRAILSSRNT--TWDITLLWSLREDDLPLVMDTLVRFPGL-P-V------STTL-FIT------ 190 (220)
T ss_pred EEEEecccchhhHHHHHHHHHhcccC--CCcEEEEEEecchhhHHHHHHHHhccCC-c-e------EEEE-EEe------
Confidence 99999999999999999998764321 2689999999999999999999887532 1 1 1111 111
Q ss_pred chhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHH
Q 008731 483 YVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 483 yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
+.||+|||+ +|+++|.+.+.+
T Consensus 191 --------------------~~v~~CGP~-~m~~~~~~~~~~ 211 (220)
T cd06197 191 --------------------SEVYLCGPP-ALEKAVLEWLEG 211 (220)
T ss_pred --------------------ccEEEECcH-HHHHHHHHHhhh
Confidence 169999998 999988887764
No 69
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.83 E-value=4e-20 Score=184.15 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=134.9
Q ss_pred CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCCCC-CCCCCeEEEcCC
Q 008731 331 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PPSVPLILIGPG 409 (556)
Q Consensus 331 ~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~lp-~~~~piimIa~G 409 (556)
.-.|+||..|++.. .+.++|.|.+ ..+|.+|.||.+|++ ||+|.+++|.|.|.+. ...+.+.|||+|
T Consensus 98 ~vvRpYTPvs~~~~-~g~~~l~VK~---------Y~~G~mS~~l~~Lki--Gd~ve~rGP~G~~~~~~~~~~~l~miAgG 165 (286)
T KOG0534|consen 98 LVVRPYTPVSLDDD-KGYFDLVVKV---------YPKGKMSQHLDSLKI--GDTVEFRGPIGEFKYDPQKAKHLGMIAGG 165 (286)
T ss_pred EEEEecCCccCccc-cceEEEEEEe---------ccCCcccHHHhcCCC--CCEEEEecCccceEecCCCcceEEEEecc
Confidence 46899999999875 5799999843 467999999999999 9999999999998887 667899999999
Q ss_pred CCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCC-CccccCCCcEEEEEecCCC----Cccch
Q 008731 410 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFYVAFSRKQP----QKVYV 484 (556)
Q Consensus 410 TGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~~~a~Sr~~~----~k~yV 484 (556)
|||||+..++|+......+ ..+++|+|++++.+|.++++||+.++++++ .| ++..+.++++. .++||
T Consensus 166 tGItPmlqii~~il~~~~d--~tki~lly~N~te~DILlr~eL~~la~~~p~rf------~~~y~v~~~~~~w~~~~g~I 237 (286)
T KOG0534|consen 166 TGITPMLQLIRAILKDPED--TTKISLLYANKTEDDILLREELEELASKYPERF------KVWYVVDQPPEIWDGSVGFI 237 (286)
T ss_pred cchhhHHHHHHHHhcCCCC--CcEEEEEEecCCccccchHHHHHHHHhhCcceE------EEEEEEcCCcccccCccCcc
Confidence 9999999999999875433 478999999999999999999999999866 77 78888888763 35666
Q ss_pred hhhHHHcHHHHHHhHcC----CCEEEEeCCCCccHHH-HHHHHH
Q 008731 485 QHKMLEQSQRIWNLLLS----KASIYVAGSATKMPSD-VWSTFE 523 (556)
Q Consensus 485 qd~l~~~~~~l~~~l~~----~~~iyvCG~~~~m~~~-v~~~L~ 523 (556)
..-+ +...+.. ...++||||+ +|.+. +..+|.
T Consensus 238 t~~~------i~~~l~~~~~~~~~~liCGPp-~m~~~~~~~~le 274 (286)
T KOG0534|consen 238 TKDL------IKEHLPPPKEGETLVLICGPP-PMINGAAQGNLE 274 (286)
T ss_pred CHHH------HHhhCCCCCCCCeEEEEECCH-HHHhHHHHHHHH
Confidence 4322 2223322 4789999999 88863 444443
No 70
>PLN02252 nitrate reductase [NADPH]
Probab=99.82 E-value=3.8e-20 Score=211.91 Aligned_cols=191 Identities=18% Similarity=0.161 Sum_probs=137.8
Q ss_pred chhHHHhhcC---CCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCC-
Q 008731 320 PIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP- 395 (556)
Q Consensus 320 p~~~l~~~lp---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~- 395 (556)
|+|++...++ ....|+|||+|.+.. .+.++|+|+++.-....+....|.+|+||..|++ |++|.+.+|.|.|.
T Consensus 667 pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~v--Gd~V~V~GP~G~f~y 743 (888)
T PLN02252 667 VGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPI--GDTIDVKGPLGHIEY 743 (888)
T ss_pred CCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCC--CCEEEEecCccceee
Confidence 4555444442 235799999999854 4789999976521111111246999999999999 99999999998764
Q ss_pred -------CC-C--CCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcC-CCccc
Q 008731 396 -------RP-P--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSE 464 (556)
Q Consensus 396 -------lp-~--~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~~ 464 (556)
++ . ..++++|||+||||||+++++++....... ..+++||||+|+.+|++|++||+++++.+ ++|
T Consensus 744 ~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~d--~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~-- 819 (888)
T PLN02252 744 AGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPED--KTEMSLVYANRTEDDILLREELDRWAAEHPDRL-- 819 (888)
T ss_pred cccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccCC--CCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCE--
Confidence 33 1 247999999999999999999998764221 26899999999999999999999998875 568
Q ss_pred cCCCcEEEEEecCC-C----CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHH-HHHHHHHHH
Q 008731 465 AKGGGFYVAFSRKQ-P----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPS-DVWSTFEEI 525 (556)
Q Consensus 465 ~~~~~~~~a~Sr~~-~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~-~v~~~L~~i 525 (556)
+++.++|++. + .+++|.+.+.+. .......+..+|+|||+ .|.+ .++..|.+.
T Consensus 820 ----~v~~vls~~~~~~w~g~~GrV~~~ll~~---~l~~~~~~~~vyiCGPp-~Mi~~av~~~L~~~ 878 (888)
T PLN02252 820 ----KVWYVVSQVKREGWKYSVGRVTEAMLRE---HLPEGGDETLALMCGPP-PMIEFACQPNLEKM 878 (888)
T ss_pred ----EEEEEecCCCcCCCCCcCCcCCHHHHHH---hcccCCCCeEEEEeCCH-HHHHHHHHHHHHHc
Confidence 7888888753 1 346666543221 00001236789999998 8887 466666553
No 71
>PRK05802 hypothetical protein; Provisional
Probab=99.81 E-value=9.5e-20 Score=187.87 Aligned_cols=168 Identities=13% Similarity=0.103 Sum_probs=126.2
Q ss_pred CchhHHHhhcC---CCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecC--C
Q 008731 319 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG--S 393 (556)
Q Consensus 319 ~p~~~l~~~lp---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g--~ 393 (556)
.|+|++...+| ....|+|||+|++.. .+.++|+|.+ .|..|++|.++++ |++|.+.+|.| .
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~-----------~G~~T~~L~~l~~--Gd~l~v~GP~GnG~ 161 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEI-----------RGVKTKKIAKLNK--GDEILLRGPYWNGI 161 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEe-----------cChhHHHHhcCCC--CCEEEEeCCCCcCc
Confidence 47787766654 234599999999853 5789999843 5999999999999 99999999984 4
Q ss_pred CCCC----CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCc
Q 008731 394 LPRP----PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGG 469 (556)
Q Consensus 394 F~lp----~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~ 469 (556)
|.++ ....++++||+|+||||+++++++....+ .+++|+||.|+++|++|+++|+++... +
T Consensus 162 F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~-----~~v~li~g~r~~~~~~~~~el~~~~~~---~------- 226 (320)
T PRK05802 162 LGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG-----NKIIVIIDKGPFKNNFIKEYLELYNIE---I------- 226 (320)
T ss_pred CCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC-----CcEEEEEeCCCHHHHHHHHHHHHhhCc---e-------
Confidence 7653 23468999999999999999999887653 469999999999999999999998654 1
Q ss_pred EEEEEecCCC----CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 470 FYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 470 ~~~a~Sr~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
....+..++. .+..|++++.+. +...||+|||. .|.+.|.+.+.+.
T Consensus 227 ~~~~~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP~-~M~k~v~~~l~~~ 276 (320)
T PRK05802 227 IELNLLDDGELSEEGKDILKEIIKKE---------DINLIHCGGSD-ILHYKIIEYLDKL 276 (320)
T ss_pred EEEEecccCCCCccccchHHHHhcCC---------CCCEEEEECCH-HHHHHHHHHHhhh
Confidence 1111112221 133444444321 23679999998 9999999888764
No 72
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.4e-19 Score=179.50 Aligned_cols=174 Identities=17% Similarity=0.222 Sum_probs=133.8
Q ss_pred CchhHHHhhcCC----CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCC
Q 008731 319 MPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS 393 (556)
Q Consensus 319 ~p~~~l~~~lp~----~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~ 393 (556)
-++|+....++. +.|.+||||++... .++++.| +..|..|.-|. ++++ |+++.+.+|.|.
T Consensus 244 qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~--sel~FsI-----------K~LGD~Tk~l~dnLk~--G~k~~vdGPYG~ 308 (438)
T COG4097 244 QAGQFAFLKIEIEEFRMRPHPFTIACSHEG--SELRFSI-----------KALGDFTKTLKDNLKV--GTKLEVDGPYGK 308 (438)
T ss_pred cCCceEEEEeccccccCCCCCeeeeeCCCC--ceEEEEe-----------hhhhhhhHHHHHhccC--CceEEEecCcce
Confidence 356665555554 45999999999853 4788887 35688898897 5999 999999999999
Q ss_pred CCCCCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEE
Q 008731 394 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 473 (556)
Q Consensus 394 F~lp~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 473 (556)
|...+....-|+||+|+|||||+|+++.....+.. .++.|||+||+.+|.+|.+||+++.+.++++ .++..
T Consensus 309 F~~~~g~~~QVWIAGGIGITPFis~l~~l~~~~s~---~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~------~lHii 379 (438)
T COG4097 309 FDFERGLNTQVWIAGGIGITPFISMLFTLAERKSD---PPVHLFYCSRNWEEALYAEELRALAQKLPNV------VLHII 379 (438)
T ss_pred eecccCCcccEEEecCcCcchHHHHHHhhcccccC---CceEEEEEecCCchhHHHHHHHHHHhcCCCe------EEEEe
Confidence 98873333389999999999999999999885555 8899999999999999999999999965777 66663
Q ss_pred EecCCCCccchh-hhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 474 FSRKQPQKVYVQ-HKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 474 ~Sr~~~~k~yVq-d~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
-|. .++|+. +.+....+. ...-.||+|||. +|.+++++.|++.
T Consensus 380 DSs---~~g~l~~e~ler~~~~-----~~~~sv~fCGP~-~m~dsL~r~l~~~ 423 (438)
T COG4097 380 DSS---KDGYLDQEDLERYPDR-----PRTRSVFFCGPI-KMMDSLRRDLKKQ 423 (438)
T ss_pred cCC---CCCccCHHHhhccccc-----cCcceEEEEcCH-HHHHHHHHHHHHc
Confidence 333 355652 222222111 113489999998 9999999888764
No 73
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.79 E-value=2.1e-19 Score=213.76 Aligned_cols=181 Identities=16% Similarity=0.197 Sum_probs=137.6
Q ss_pred CchhHHHhhcC--C-CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecC---
Q 008731 319 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG--- 392 (556)
Q Consensus 319 ~p~~~l~~~lp--~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g--- 392 (556)
.|+|++...++ . ...|+|||+|.|. ..+.++|+|+ ...|.+|+||+++++ |++|.+.+|.|
T Consensus 949 ~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr----------~~~G~~S~~L~~l~~--Gd~v~v~gp~G~~~ 1015 (1167)
T PTZ00306 949 TLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILAR----------GDKGTLKEWISALRP--GDSVEMKACGGLRI 1015 (1167)
T ss_pred CCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEE----------cCCChhHHHHhhCCC--CCEEEEeCCcCccc
Confidence 46676665553 2 2459999999995 3578999883 246999999999999 99999998655
Q ss_pred -------CCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCC-Ccc
Q 008731 393 -------SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFS 463 (556)
Q Consensus 393 -------~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~ 463 (556)
.|.++ ...+|+||||+|||||||++|+++...........+++||||+|+.+|++|++||++|.+.++ +|
T Consensus 1016 ~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f- 1094 (1167)
T PTZ00306 1016 ERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKF- 1094 (1167)
T ss_pred cccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCE-
Confidence 35555 556899999999999999999998876421011258999999999999999999999987654 58
Q ss_pred ccCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHhHc---CCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 464 EAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLL---SKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 464 ~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~l~~~l~---~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
++++++|+++. .+++|++.+.+ +.+. .+..+|+|||+ .|.+.+++.|.+.
T Consensus 1095 -----~~~~~ls~~~~~w~~~~G~i~~~~l~------~~l~~~~~~~~vyiCGP~-~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1095 -----KCHFVLNNPPEGWTDGVGFVDRALLQ------SALQPPSKDLLVAICGPP-VMQRAVKADLLAL 1151 (1167)
T ss_pred -----EEEEEECCCCcccCCCCCCCCHHHHH------HhcCCCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence 88889987543 24666543322 2222 36789999998 9999999888664
No 74
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.75 E-value=2.6e-18 Score=197.13 Aligned_cols=170 Identities=18% Similarity=0.207 Sum_probs=131.7
Q ss_pred CchhHHHhhcCCC-CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceE-EEEeecCCCCC
Q 008731 319 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~v~~~~g~F~l 396 (556)
.|+|++...++.. ..|+|||+|.+.. .+.++|+|.+ .|..|.+|+++++ |+.| .+.+|.|+|..
T Consensus 29 ~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~-----------vG~~T~~L~~l~~--Gd~v~~v~GP~G~~~~ 94 (752)
T PRK12778 29 KPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQE-----------VGLSTTKLCELNE--GDYITDVVGPLGNPSE 94 (752)
T ss_pred CCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEE-----------cCchHHHHhcCCC--CCEeCeEeCCCCCCcc
Confidence 4788877766543 4689999999853 4789999954 3899999999999 9999 79999999876
Q ss_pred CCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 397 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 397 p~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
+...++++|||+|+||||+++++++....+ .+++||||.|+.+|++|.+||+++... ++++ +.
T Consensus 95 ~~~~~~~llvaGG~GiaPl~~l~~~l~~~~-----~~v~l~~g~r~~~~l~~~~el~~~~~~-----------~~~~-t~ 157 (752)
T PRK12778 95 IENYGTVVCAGGGVGVAPMLPIVKALKAAG-----NRVITILGGRSKELIILEDEMRESSDE-----------VIIM-TD 157 (752)
T ss_pred CCCCCeEEEEECCEeHHHHHHHHHHHHHCC-----CeEEEEeccCCHHHhhhHHHHHhhcCe-----------EEEE-EC
Confidence 643579999999999999999999887653 469999999999999999999988643 1222 23
Q ss_pred CC--CCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHH
Q 008731 477 KQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 477 ~~--~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
++ ..+++|++.+.+.... ..+...||+|||+ +|++.+.+.+.+
T Consensus 158 dg~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP~-~M~~~v~~~l~~ 202 (752)
T PRK12778 158 DGSYGRKGLVTDGLEEVIKR----ETKVDKVFAIGPA-IMMKFVCLLTKK 202 (752)
T ss_pred CCCCCCcccHHHHHHHHhhc----CCCCCEEEEECCH-HHHHHHHHHHHH
Confidence 32 2467888766543211 1123579999998 999999988765
No 75
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.74 E-value=3.2e-18 Score=169.54 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=112.4
Q ss_pred CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCcc-CccchhhhccCCCCCceEEEEeecCCCCCCCCCCCeEEEcCC
Q 008731 331 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPG 409 (556)
Q Consensus 331 ~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~-G~~S~~L~~l~~~~G~~v~v~~~~g~F~lp~~~~piimIa~G 409 (556)
...|.|||+|.+.. .++++|.|.+ ... |.+|+||+++++ |++|.+.+|.|.|.++....+++|||+|
T Consensus 62 ~~~R~YSi~~~~~~-~~~l~~~v~~---------~~~~G~~s~~l~~l~~--Gd~v~v~gP~G~~~~~~~~~~~vlia~G 129 (235)
T cd06193 62 PVMRTYTVRRFDPE-AGELDIDFVL---------HGDEGPASRWAASAQP--GDTLGIAGPGGSFLPPPDADWYLLAGDE 129 (235)
T ss_pred CcCcccceeEEcCC-CCEEEEEEEe---------CCCCCchHHHHhhCCC--CCEEEEECCCCCCCCCCCcceEEEEecc
Confidence 34699999998743 5789999853 234 999999999999 9999999999999887556799999999
Q ss_pred CCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEecCCCCccchhhhHH
Q 008731 410 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKML 489 (556)
Q Consensus 410 TGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~ 489 (556)
|||||+++++++.... .++.++||+|+.+|.++.++ . ..+ +++.+.+++.. .......+.
T Consensus 130 tGi~p~~~il~~~~~~------~~~~~~~~~~~~~d~~~l~~------~-~~~------~~~~~~~~~~~-~~~~~~~~~ 189 (235)
T cd06193 130 TALPAIAAILEELPAD------ARGTALIEVPDAADEQPLPA------P-AGV------EVTWLHRGGAE-AGELALLAV 189 (235)
T ss_pred chHHHHHHHHHhCCCC------CeEEEEEEECCHHHccccCC------C-CCc------EEEEEeCCCCC-cchhHHHHH
Confidence 9999999999986542 47999999999866543222 1 344 55555544332 111111000
Q ss_pred HcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHH
Q 008731 490 EQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 490 ~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
.......++..+|+||++ .|++.+++.|.+
T Consensus 190 ----~~~~~~~~~~~vyicGp~-~mv~~v~~~l~~ 219 (235)
T cd06193 190 ----RALAPPAGDGYVWIAGEA-GAVRALRRHLRE 219 (235)
T ss_pred ----hcccCCCCCeEEEEEccH-HHHHHHHHHHHH
Confidence 000011236799999998 999998887765
No 76
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.73 E-value=8.3e-18 Score=163.41 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=120.9
Q ss_pred CchhHHHhhcCCC----CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccC------CCCCceEEEE
Q 008731 319 MPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD------PQQGIYIPAW 388 (556)
Q Consensus 319 ~p~~~l~~~lp~~----~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~------~~~G~~v~v~ 388 (556)
.|+|++...+|.. ..|+|||+|++....+.++|+|+. ..|..|.++..++ . |+.+.+.
T Consensus 26 ~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~----------~~G~~t~~~~~~~~~~~~~~--~~~v~v~ 93 (210)
T cd06186 26 KPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRA----------KKGFTTRLLRKALKSPGGGV--SLKVLVE 93 (210)
T ss_pred CCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEe----------cCChHHHHHHHHHhCcCCCc--eeEEEEE
Confidence 5788887777754 789999999986434789999843 2388888888776 6 9999999
Q ss_pred eecCCCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCC-CCCCEEEEEcccCCCc-cccHHHHHHhHhcCCCcccc
Q 008731 389 FQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNEDD-FLYRELWLSHSLNDGVFSEA 465 (556)
Q Consensus 389 ~~~g~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~-~~~~~~L~~G~R~~~d-~ly~~el~~~~~~~g~l~~~ 465 (556)
+|.|.+..+ ....++||||+||||||+++++++........ ...++.|+|++|+.+| ..|.++|.+..+.....
T Consensus 94 GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~~~~~~~~~l~~~~~~~~~~--- 170 (210)
T cd06186 94 GPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLEWFLDELRAAQELEVDG--- 170 (210)
T ss_pred CCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHHHhHHHHHHHHhhhhccCCc---
Confidence 999998755 56689999999999999999999988764200 1268999999999997 47999998621110110
Q ss_pred CCCcEEEEEecCCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHH
Q 008731 466 KGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 466 ~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
++.+.+++ +|+|||. .|.++++....+
T Consensus 171 ---~~~i~~T~----------------------------v~~CGp~-~~~~~~~~~~~~ 197 (210)
T cd06186 171 ---EIEIYVTR----------------------------VVVCGPP-GLVDDVRNAVAK 197 (210)
T ss_pred ---eEEEEEee----------------------------EEEECch-hhccHHHHHHhh
Confidence 13333333 9999997 999999887766
No 77
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.71 E-value=1.6e-17 Score=144.00 Aligned_cols=104 Identities=23% Similarity=0.333 Sum_probs=80.9
Q ss_pred EEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCC-ccccCCCcEEEEEecCCC----
Q 008731 405 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGV-FSEAKGGGFYVAFSRKQP---- 479 (556)
Q Consensus 405 mIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~-l~~~~~~~~~~a~Sr~~~---- 479 (556)
|||+|||||||+||++++...... .+++||||+|+.+|++|+++|+++.+.+.. + +++.+ ++.+.
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~------~~~~~-~~~~~~~~~ 70 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERNDN---RKVTLFYGARTPEDLLFRDELEALAQEYPNRF------HVVYV-SSPDDGWDG 70 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTCT---SEEEEEEEESSGGGSTTHHHHHHHHHHSTTCE------EEEEE-TTTTSSTTS
T ss_pred CeecceeHHHHHHHHHHHHHhCCC---CCEEEEEEEcccccccchhHHHHHHhhccccc------ccccc-cccccccCC
Confidence 799999999999999999987544 889999999999999999999999987443 4 33333 44332
Q ss_pred CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHH
Q 008731 480 QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWS 520 (556)
Q Consensus 480 ~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~ 520 (556)
.++||++.+.+.... ...-..+..||+|||+ +|.++|++
T Consensus 71 ~~g~v~~~~~~~~~~-~~~~~~~~~v~iCGp~-~m~~~v~~ 109 (109)
T PF00175_consen 71 FKGRVTDLLLEDLLP-EKIDPDDTHVYICGPP-PMMKAVRK 109 (109)
T ss_dssp EESSHHHHHHHHHHH-HHHCTTTEEEEEEEEH-HHHHHHHH
T ss_pred ceeehhHHHHHhhcc-cccCCCCCEEEEECCH-HHHHHhcC
Confidence 378999988654333 1222349999999998 99998864
No 78
>PRK05723 flavodoxin; Provisional
Probab=99.70 E-value=4.1e-17 Score=149.95 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=74.2
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCc-hHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRS 79 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y-~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~ 79 (556)
+..||++|.... + ..|+|++|||||||||+| ++||.+++.++++|+++||++|++++++|++...++++++++|+++
T Consensus 67 ~~~f~~~L~~~~-~-~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~ 144 (151)
T PRK05723 67 LMPLYSAIRDQL-P-AAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAE 144 (151)
T ss_pred HHHHHHHHHhcC-c-cCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHH
Confidence 368999997642 2 249999999999999999 7999999999999999999999999999998766799999999999
Q ss_pred HHHHHh
Q 008731 80 LWRRLH 85 (556)
Q Consensus 80 ~~~~l~ 85 (556)
+|++|.
T Consensus 145 ~~~~l~ 150 (151)
T PRK05723 145 FAAALK 150 (151)
T ss_pred HHHHhc
Confidence 998874
No 79
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.69 E-value=1.2e-16 Score=185.61 Aligned_cols=180 Identities=11% Similarity=0.027 Sum_probs=128.5
Q ss_pred CchhHHHhhcC-CCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEE-EEeecCCCC-
Q 008731 319 MPIDWLVQLVP-PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP-AWFQKGSLP- 395 (556)
Q Consensus 319 ~p~~~l~~~lp-~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~-v~~~~g~F~- 395 (556)
.|+|++...++ +...|+|||+|.+.. .+.++|+|.+ .|..|.+|.++++ |+.|. +.+|.|.|.
T Consensus 678 ~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~-----------vG~~T~~L~~lk~--Gd~l~~I~GPlG~~f~ 743 (944)
T PRK12779 678 QAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQG-----------MGTSSLEINRMAI--GDAFSGIAGPLGRASE 743 (944)
T ss_pred CCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEe-----------eccHHHHHhcCCC--cCEEeeeecCCCCCcC
Confidence 47777666553 334599999998743 4789999843 3888999999999 99995 999999864
Q ss_pred CCC--CCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHH---HHhHhcCCC-ccccCCCc
Q 008731 396 RPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELW---LSHSLNDGV-FSEAKGGG 469 (556)
Q Consensus 396 lp~--~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el---~~~~~~~g~-l~~~~~~~ 469 (556)
++. ..++++|||+|+||||+++++++....+ .+++|+||+|+.+|++|.+++ ++|++.++. + +
T Consensus 744 ~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g-----~~V~li~G~Rs~edl~~~del~~L~~la~~~~~~~------~ 812 (944)
T PRK12779 744 LHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG-----NHVTLISGFRAKEFLFWTGDDERVGKLKAEFGDQL------D 812 (944)
T ss_pred CccccCCCcEEEEEccEeHHHHHHHHHHHHHCC-----CCEEEEEEeCCHHHhhhHHHHHHHHHHHHHcCCCe------E
Confidence 432 3479999999999999999999876643 569999999999898887664 556554343 3 4
Q ss_pred EEEEEecCC--CCccchhhhHHHcHHHHHHhHc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 470 FYVAFSRKQ--PQKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 470 ~~~a~Sr~~--~~k~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
++++ +.++ ..+++|++.+.+........-. ....||+|||+ +|++.|.+.|.+.
T Consensus 813 v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP~-~Mmkav~~~l~~~ 869 (944)
T PRK12779 813 VIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGPP-LMMRAVSDLTKPY 869 (944)
T ss_pred EEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECCH-HHHHHHHHHHHHc
Confidence 4433 4332 2467888766543211000000 13579999998 9999999887654
No 80
>PRK09004 FMN-binding protein MioC; Provisional
Probab=99.68 E-value=7.5e-17 Score=147.63 Aligned_cols=81 Identities=27% Similarity=0.351 Sum_probs=73.1
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
++.||++|+... ..|+|++|||||||||+|++||.+++.++++|.++||++|.|++++|+....+++++|++|.+.+
T Consensus 66 ~~~f~~~L~~~~---~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~ 142 (146)
T PRK09004 66 LQPFFEELQEQK---PDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSW 142 (146)
T ss_pred HHHHHHHHHhcC---CCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHH
Confidence 368999998753 23999999999999999999999999999999999999999999999987777899999999999
Q ss_pred HHHH
Q 008731 81 WRRL 84 (556)
Q Consensus 81 ~~~l 84 (556)
+..|
T Consensus 143 ~~~~ 146 (146)
T PRK09004 143 INLL 146 (146)
T ss_pred HHhC
Confidence 8754
No 81
>PRK08105 flavodoxin; Provisional
Probab=99.66 E-value=2.8e-16 Score=144.39 Aligned_cols=80 Identities=30% Similarity=0.483 Sum_probs=71.7
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
+..||++|++.. ..|+|++|||||||||+|++||.++++++++|+++||++|+|++++|++++.+++..|++|+++
T Consensus 68 ~~~f~~~l~~~~---~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~- 143 (149)
T PRK08105 68 IVPLFQALKDTA---GYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ- 143 (149)
T ss_pred HHHHHHHHHhcC---cccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-
Confidence 468999998642 2499999999999999999999999999999999999999999999998877899999999999
Q ss_pred HHHH
Q 008731 81 WRRL 84 (556)
Q Consensus 81 ~~~l 84 (556)
|..+
T Consensus 144 ~~~~ 147 (149)
T PRK08105 144 WGTL 147 (149)
T ss_pred HHHH
Confidence 5543
No 82
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.65 E-value=4e-16 Score=182.61 Aligned_cols=169 Identities=13% Similarity=0.125 Sum_probs=127.3
Q ss_pred CchhHHHhhcCC-CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhh-hccCCCCCceE-EEEeecCCCC
Q 008731 319 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQGIYI-PAWFQKGSLP 395 (556)
Q Consensus 319 ~p~~~l~~~lp~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L-~~l~~~~G~~v-~v~~~~g~F~ 395 (556)
.|+|+++..++. ...|+|||++.+.. .+.++|.|.+ .|..|.|| .++++ ||.| .+.+|.|.|.
T Consensus 29 ~PGQFV~l~~~~~~errplSIa~~~~~-~g~i~l~vk~-----------vG~~T~~L~~~lk~--Gd~l~~v~GPlG~~~ 94 (1006)
T PRK12775 29 EPGHFVMLRLYEGAERIPLTVADFDRK-KGTITMVVQA-----------LGKTTREMMTKFKA--GDTFEDFVGPLGLPQ 94 (1006)
T ss_pred CCCeeEEEEeCCCCeeEEEEecCcCCC-CCEEEEEEEe-----------cCcHHHHHHhcCCC--CCEEeeeecCCCCCC
Confidence 488887777643 34699999998743 4788888843 48999998 58999 9999 7999999865
Q ss_pred CCCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEe
Q 008731 396 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 475 (556)
Q Consensus 396 lp~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 475 (556)
.....+++||||+|+||||+++++++....+ .+++++||+|++++++|.+||+.+... ++++ +
T Consensus 95 ~~~~~~~vllVaGGiGIAPl~s~~r~l~~~g-----~~v~li~g~R~~~~l~~~del~~~~~~-----------~~v~-t 157 (1006)
T PRK12775 95 HIDKAGHVVLVGGGLGVAPVYPQLRAFKEAG-----ARTTGIIGFRNKDLVFWEDKFGKYCDD-----------LIVC-T 157 (1006)
T ss_pred CCCCCCeEEEEEEhHHHHHHHHHHHHHHhCC-----CcEEEEEeCCChHHcccHHHHHhhcCc-----------EEEE-E
Confidence 4433578999999999999999999876643 469999999999999999999877532 2222 3
Q ss_pred cCCC--CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHH
Q 008731 476 RKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 476 r~~~--~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
.++. .+++|++.+.+.... .....||+|||+ .|++.|.+.+++
T Consensus 158 ddgs~G~~G~vt~~l~~~l~~-----~~~d~vy~CGP~-~Mm~av~~~~~~ 202 (1006)
T PRK12775 158 DDGSYGKPGFVTAALKEVCEK-----DKPDLVVAIGPL-PMMNACVETTRP 202 (1006)
T ss_pred CCCCCCCCCChHHHHHHHhcc-----CCCCEEEEECCH-HHHHHHHHHHHH
Confidence 3322 467787766542110 124579999998 999999987764
No 83
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.48 E-value=2.2e-13 Score=152.48 Aligned_cols=175 Identities=18% Similarity=0.184 Sum_probs=123.8
Q ss_pred CchhHHHhhcCCC---CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-c----cCCCCC------ce
Q 008731 319 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-G----LDPQQG------IY 384 (556)
Q Consensus 319 ~p~~~l~~~lp~~---~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~----l~~~~G------~~ 384 (556)
.|+|++...+|.. +.|+|||+|+|...++.++++|++ .+| .|+.|. . +++ | .+
T Consensus 340 ~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~----------~gG-~T~~L~~~i~~~l~~--g~~~~~~~~ 406 (722)
T PLN02844 340 APTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKC----------EGG-WTNSLYNKIQAELDS--ETNQMNCIP 406 (722)
T ss_pred CCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEe----------CCC-chHHHHHHHHhhccC--CCCcccceE
Confidence 4788777767653 679999999875446788888843 233 344443 2 233 4 37
Q ss_pred EEEEeecCCCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCC--CCCCEEEEEcccCCCccccHHHHHH-----hH
Q 008731 385 IPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLS-----HS 456 (556)
Q Consensus 385 v~v~~~~g~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~-----~~ 456 (556)
+.+.+|.|.|..+ ....+++|||+|||||||+|++++....+... ...++.|+|++|+.+|+.|.+++.. +.
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~~ 486 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQDICLLNPISSLLLNQSS 486 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhhHHHHHHHhHHhHH
Confidence 8889999998766 44579999999999999999999998643211 1257999999999999999999863 22
Q ss_pred hcCCCccccCCCcEEEEEecCCCCccchhhhHHHc--HHHHHHhHcCCCEEEEeCCCCcc
Q 008731 457 LNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQ--SQRIWNLLLSKASIYVAGSATKM 514 (556)
Q Consensus 457 ~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~--~~~l~~~l~~~~~iyvCG~~~~m 514 (556)
+. .++ +++...+|++.....+++.+... ...++ +-.+...+.+||+...+
T Consensus 487 ~~-~~l------kl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~~~l 538 (722)
T PLN02844 487 NQ-LNL------KLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLESFL 538 (722)
T ss_pred Hh-cCc------eEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCCchH
Confidence 22 345 78888999876555677766652 22222 22337789999997544
No 84
>PLN02292 ferric-chelate reductase
Probab=99.47 E-value=1.9e-13 Score=152.66 Aligned_cols=172 Identities=18% Similarity=0.217 Sum_probs=121.2
Q ss_pred CchhHHHhhcCC---CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCc-----eEEEEe
Q 008731 319 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGI-----YIPAWF 389 (556)
Q Consensus 319 ~p~~~l~~~lp~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~-----~v~v~~ 389 (556)
.|+|++...+|. .+.|+|||+|+|...++.++++|+ ..|-.|++|.+ ++. |+ +|.+.+
T Consensus 353 ~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK-----------~~G~~T~~L~~~l~~--gd~i~~~~V~VeG 419 (702)
T PLN02292 353 SPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIK-----------SQGKWSTKLYHMLSS--SDQIDRLAVSVEG 419 (702)
T ss_pred CCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEE-----------cCCchhHHHHHhCCC--CCccccceEEEEC
Confidence 477776666664 478999999998544678999984 34777888864 577 77 457889
Q ss_pred ecCCCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCC--CCCCEEEEEcccCCCccccHHHHHH-------hHhcC
Q 008731 390 QKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLS-------HSLND 459 (556)
Q Consensus 390 ~~g~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~-------~~~~~ 459 (556)
|.|.+..+ ....+++|||||+||||+++++++..+..... ...++.|+|++|+.+|..+.+++.. +.+.
T Consensus 420 PYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~- 498 (702)
T PLN02292 420 PYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSF- 498 (702)
T ss_pred CccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhc-
Confidence 99987655 44579999999999999999999987753211 1257999999999999988765543 2233
Q ss_pred CCccccCCCcEEEEEecCCCCcc-chhhhHHHcHHHHHHhHc-----CCCEEEEeCCCCcc
Q 008731 460 GVFSEAKGGGFYVAFSRKQPQKV-YVQHKMLEQSQRIWNLLL-----SKASIYVAGSATKM 514 (556)
Q Consensus 460 g~l~~~~~~~~~~a~Sr~~~~k~-yVqd~l~~~~~~l~~~l~-----~~~~iyvCG~~~~m 514 (556)
-++ ++.+.++|+.+.+. |-++ ..+.+.+.+. ++..+.+|||+..+
T Consensus 499 ~~~------~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~ 549 (702)
T PLN02292 499 IDI------QIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPNSWL 549 (702)
T ss_pred CCc------eEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCCchH
Confidence 455 77888888765321 1111 2223323322 36789999998554
No 85
>PLN02631 ferric-chelate reductase
Probab=99.44 E-value=2.1e-13 Score=152.02 Aligned_cols=142 Identities=19% Similarity=0.233 Sum_probs=109.4
Q ss_pred CchhHHHhhcCC---CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCc--eEEEEeecC
Q 008731 319 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGI--YIPAWFQKG 392 (556)
Q Consensus 319 ~p~~~l~~~lp~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~--~v~v~~~~g 392 (556)
.|+|++...+|. .+.|+|||+|+|...++.++|+|+ ..|-.|++|.+ ++. .|+ +|.+.+|.|
T Consensus 336 ~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK-----------~~Gg~T~~L~~~l~~-~g~~i~V~VeGPYG 403 (699)
T PLN02631 336 TPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIR-----------RQGSWTQKLYTHLSS-SIDSLEVSTEGPYG 403 (699)
T ss_pred CCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEE-----------cCChHHHHHHHhhhc-CCCeeEEEEECCCC
Confidence 477877766665 467999999998544678999983 35888999864 532 144 677789999
Q ss_pred CCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCC--CCCCEEEEEcccCCCccccHHHHHHh------HhcCCCcc
Q 008731 393 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSH------SLNDGVFS 463 (556)
Q Consensus 393 ~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~------~~~~g~l~ 463 (556)
.|..+ ....++||||+|+||||++|++++...+.... +..++.|+||.|+.+|+.|.|||+.+ .++ -++
T Consensus 404 ~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~-~ni- 481 (699)
T PLN02631 404 PNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISR-LNL- 481 (699)
T ss_pred CCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhc-Cce-
Confidence 87766 55678999999999999999999998653221 23579999999999999999999863 223 367
Q ss_pred ccCCCcEEEEEecCCC
Q 008731 464 EAKGGGFYVAFSRKQP 479 (556)
Q Consensus 464 ~~~~~~~~~a~Sr~~~ 479 (556)
++...+||++.
T Consensus 482 -----~i~iyVTR~~~ 492 (699)
T PLN02631 482 -----RIEAYITREDK 492 (699)
T ss_pred -----EEEEEEcCCCC
Confidence 78888999754
No 86
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.20 E-value=6.8e-12 Score=121.08 Aligned_cols=160 Identities=20% Similarity=0.247 Sum_probs=101.9
Q ss_pred ccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCCCCCC----CCCCCeEEEc
Q 008731 333 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPRP----PPSVPLILIG 407 (556)
Q Consensus 333 pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~lp----~~~~piimIa 407 (556)
-|.||.|+......+.+.|.|+ +...|+.|+|++ +++. ||.|.++.|.|+|.+. +.+.|++++|
T Consensus 201 ~~~~~~S~~~~t~rN~~R~sVr---------~~A~G~VS~~~H~~~KV--GD~v~~S~PAG~F~~~r~~~~~N~PL~~~a 269 (385)
T KOG3378|consen 201 LREYSLSNRVDTCRNQFRISVR---------RVAGGVVSNFVHDNLKV--GDIVGVSPPAGNFVYKRSEENVNRPLLCFA 269 (385)
T ss_pred HHHHHHhhhhhhhccceeEEEe---------ehhchhhHHHhhccccc--cceeeccCCCccceeehhhhccCCceEEec
Confidence 4556665555445688999884 446799999998 6999 9999999999999875 6779999999
Q ss_pred CCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcC-CCccccCCCcEEEEEecCCC--Cccch
Q 008731 408 PGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGFYVAFSRKQP--QKVYV 484 (556)
Q Consensus 408 ~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~~~~~~~~~~a~Sr~~~--~k~yV 484 (556)
+|+||+|++++++....-.. .| .|..-+.++..++ .++ ++.--||.+.. .+..|
T Consensus 270 ~GiGiTPLi~iiE~~~~C~~------------~R-----P~~~~~~~~~~K~k~~~------K~~e~~~~E~s~~~~~IV 326 (385)
T KOG3378|consen 270 GGIGITPLIPIIETALLCYS------------SR-----PFKQWLEQLKLKYKENL------KLKEFFSEESSVTKEQIV 326 (385)
T ss_pred CCcCccccHHHHHHHHhcCC------------CC-----cHHHHHHHHHHHHHHHH------HHHHHHHHhhccchhhhh
Confidence 99999999999998765322 22 1111111111110 011 11111222221 12223
Q ss_pred hhhHHH--cHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHH
Q 008731 485 QHKMLE--QSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVS 527 (556)
Q Consensus 485 qd~l~~--~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~ 527 (556)
...+.. +.+++-++-...++||.|||. .+++.|...|.++..
T Consensus 327 ~~~~~~iI~~~~L~~~~~s~~DiY~~G~~-~~M~~~~~~L~~L~~ 370 (385)
T KOG3378|consen 327 DEVMTRIINEEDLEKLDLSECDIYMLGPN-NYMRFVKQELVKLGV 370 (385)
T ss_pred hhhhhhhcCHHHhhhcChhhCceeeeCcH-HHHHHHHHHHHHhcC
Confidence 222221 233333333348999999998 777899998888754
No 87
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.17 E-value=1.5e-11 Score=112.00 Aligned_cols=74 Identities=46% Similarity=0.624 Sum_probs=62.8
Q ss_pred HHHHHHHhcC--CCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHH
Q 008731 3 VFWRFLLQKS--LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPW 76 (556)
Q Consensus 3 ~F~~~l~~~~--~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W 76 (556)
.|++++.... .....|++++|||||+||+.|..||.+++.++++|+++||+++.|++++|+..+++.++.|+.|
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 68 FFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp HHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred hhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence 4566665431 2234589999999999999999999999999999999999999999999998755688999998
No 88
>PRK07308 flavodoxin; Validated
Probab=99.01 E-value=8.1e-10 Score=101.25 Aligned_cols=75 Identities=24% Similarity=0.227 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHH
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 81 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~ 81 (556)
++|+++|.... +++++|+|||+||+.|+.||.+++.++++|.++||+++.+....|...++...+.+..|.+++.
T Consensus 69 ~~fl~~l~~~~-----l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~ 143 (146)
T PRK07308 69 VDFYEDLADLD-----LSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEELA 143 (146)
T ss_pred HHHHHHHhcCC-----CCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 56888876544 8999999999999999999999999999999999999999988888765444455667776664
No 89
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=98.99 E-value=8.7e-10 Score=112.88 Aligned_cols=79 Identities=33% Similarity=0.533 Sum_probs=67.0
Q ss_pred HHHHHHhc----CCCCCCCCCceEEEEEecCCCc-hHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHH
Q 008731 4 FWRFLLQK----SLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMR 78 (556)
Q Consensus 4 F~~~l~~~----~~~~~~l~~~~~avfGlGds~Y-~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~ 78 (556)
|..||... .++...|.|++||||||||+.| ++||+.|+.+|+++..|||.|++|+|++|.++ ..++.|..
T Consensus 112 ~~~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~G~~~~~~-----~~id~W~~ 186 (601)
T KOG1160|consen 112 FLQWLEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPLGEVDMDS-----AKIDEWTS 186 (601)
T ss_pred HHHHHHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeecCcccccc-----ccHHHHHH
Confidence 55666542 2455569999999999999987 69999999999999999999999999999873 46779999
Q ss_pred HHHHHHhhh
Q 008731 79 SLWRRLHQI 87 (556)
Q Consensus 79 ~~~~~l~~~ 87 (556)
.+...|++-
T Consensus 187 ~~~~~Lk~g 195 (601)
T KOG1160|consen 187 LVAETLKDG 195 (601)
T ss_pred HHHHHHcCC
Confidence 999988764
No 90
>PRK06703 flavodoxin; Provisional
Probab=98.72 E-value=4.1e-08 Score=90.45 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCC-CCchhhHHHHHHHH
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHP-SGYEGALDPWMRSL 80 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~-~~~~~~~~~W~~~~ 80 (556)
+.|+++|.... +++++|+|||+||++|+.||.+++.++++|+++|++.+.+....+.... ......+..|.+++
T Consensus 69 ~~f~~~l~~~~-----l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 143 (151)
T PRK06703 69 EDFHEDLENID-----LSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAF 143 (151)
T ss_pred HHHHHHHhcCC-----CCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHH
Confidence 56778776543 7899999999999999999999999999999999999888877776653 23456778998888
Q ss_pred HHHHh
Q 008731 81 WRRLH 85 (556)
Q Consensus 81 ~~~l~ 85 (556)
.+.+.
T Consensus 144 ~~~~~ 148 (151)
T PRK06703 144 AEKFA 148 (151)
T ss_pred HHHHH
Confidence 76543
No 91
>PRK12359 flavodoxin FldB; Provisional
Probab=98.61 E-value=1.8e-07 Score=87.85 Aligned_cols=79 Identities=24% Similarity=0.411 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCC-Cc-hHHHHHHHHHHHHHHhcCCeEe----------------eccc----
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDS-GY-QKFNFVAKKLDNRLLDLGATAV----------------VERG---- 59 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds-~Y-~~fc~~~~~l~~~l~~lGa~~~----------------~~~~---- 59 (556)
.+||+.|...+ |+|+++|+||+||+ .| ++||.+.+.++++|++.||+.+ ..-+
T Consensus 66 ~~~~~~l~~~d-----l~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~ 140 (172)
T PRK12359 66 EAVWDQLDDLN-----LEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFV 140 (172)
T ss_pred HHHHHHHhhCC-----CCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEE
Confidence 46777776554 99999999999998 59 5899999999999999999864 1110
Q ss_pred --cccCC-CCCCchhhHHHHHHHHHHHHh
Q 008731 60 --LGDDQ-HPSGYEGALDPWMRSLWRRLH 85 (556)
Q Consensus 60 --~~D~~-~~~~~~~~~~~W~~~~~~~l~ 85 (556)
..|+. +++-.++.++.|.+++.+.+.
T Consensus 141 gl~lD~~nq~~~t~~ri~~W~~~~~~~~~ 169 (172)
T PRK12359 141 GLALDEVNQYDLSDERIQQWCEQILLEMA 169 (172)
T ss_pred EEEEcCCCchhhhHHHHHHHHHHHHHHHH
Confidence 12333 223466889999999887664
No 92
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.53 E-value=1.6e-07 Score=86.72 Aligned_cols=72 Identities=15% Similarity=0.281 Sum_probs=49.2
Q ss_pred CeEEEcCCCCchhhHHHHHHHHHhhCCC--CCCCEEEEEcccCCCcc-ccHHHHHHhHhcC--CCccccCCCcEEEEEec
Q 008731 402 PLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDF-LYRELWLSHSLND--GVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 402 piimIa~GTGIAPf~s~lq~~~~~~~~~--~~~~~~L~~G~R~~~d~-ly~~el~~~~~~~--g~l~~~~~~~~~~a~Sr 476 (556)
.++|||||+||+|+.+++++.......+ ...++.|+|.+|+.+++ .|.++|.++.... +.+ ++.+.+++
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~------~~~iyvT~ 76 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNV------EVHIYVTR 76 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSE------EEEEEETT
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccc------eEEEEEcC
Confidence 4899999999999999999998765421 45789999999999854 5776665554421 356 67777776
Q ss_pred CCC
Q 008731 477 KQP 479 (556)
Q Consensus 477 ~~~ 479 (556)
+..
T Consensus 77 ~~~ 79 (156)
T PF08030_consen 77 ESS 79 (156)
T ss_dssp ---
T ss_pred Ccc
Confidence 543
No 93
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=98.41 E-value=7e-07 Score=82.32 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchH-HHHHHHHHHHHHHhcC--CeEeeccccc--cCCCCCCchhhHHHH
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQK-FNFVAKKLDNRLLDLG--ATAVVERGLG--DDQHPSGYEGALDPW 76 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~-fc~~~~~l~~~l~~lG--a~~~~~~~~~--D~~~~~~~~~~~~~W 76 (556)
.+|+..+... .+++++||+||+||+.|.. ||.++..+.+.|+..| +....+.... |..+++..+..++.|
T Consensus 69 ~~f~~~~~~~-----~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w 143 (151)
T COG0716 69 YDFIEELEPI-----DFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEW 143 (151)
T ss_pred HHHHHHhccc-----CcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHH
Confidence 4677777542 3899999999999999997 9999999999999999 6666776665 666667788999999
Q ss_pred HHHHHHH
Q 008731 77 MRSLWRR 83 (556)
Q Consensus 77 ~~~~~~~ 83 (556)
.++++..
T Consensus 144 ~~~~~~~ 150 (151)
T COG0716 144 VKQILNE 150 (151)
T ss_pred HHHHHhh
Confidence 9988753
No 94
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=98.37 E-value=9.3e-07 Score=79.84 Aligned_cols=73 Identities=27% Similarity=0.376 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
+.|+++|.... ++|++|+|||+|++.|+ ||.+++.++++|+++|++++.+....+...+....+.+..|..++
T Consensus 67 ~~f~~~l~~~~-----~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~~~~l 139 (140)
T TIGR01753 67 EPFFEELEDID-----LGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVDGDPEEEDLDKCREFAKDL 139 (140)
T ss_pred HHHHHHhhhCC-----CCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeeecCCCHHHHHHHHHHHHHh
Confidence 56777776543 78999999999999999 999999999999999999999877666554433344456665543
No 95
>PRK06756 flavodoxin; Provisional
Probab=98.30 E-value=1.9e-06 Score=79.10 Aligned_cols=78 Identities=23% Similarity=0.232 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHH
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 81 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~ 81 (556)
..|++.|...+ ++|+++++||+|++.|..||.+.+.++++|+++|++.+.+........++..-..+..|.+.+.
T Consensus 70 ~~fl~~l~~~~-----l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~p~~~d~~~~~~~~~~~~ 144 (148)
T PRK06756 70 LDFYDAMDSID-----LTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELTPEDEDVEKCLQFGAEFV 144 (148)
T ss_pred HHHHHHHhcCC-----CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecCCCHHHHHHHHHHHHHHH
Confidence 45666664433 8999999999999999999999999999999999999988777766554333344566766665
Q ss_pred HHH
Q 008731 82 RRL 84 (556)
Q Consensus 82 ~~l 84 (556)
++|
T Consensus 145 ~~~ 147 (148)
T PRK06756 145 KHL 147 (148)
T ss_pred Hhc
Confidence 443
No 96
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=98.28 E-value=2.7e-06 Score=79.74 Aligned_cols=51 Identities=31% Similarity=0.345 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEEEecCC-Cc-hHHHHHHHHHHHHHHhcCCeEeecc
Q 008731 3 VFWRFLLQKSLSKQWLEGVRYAVFGLGDS-GY-QKFNFVAKKLDNRLLDLGATAVVER 58 (556)
Q Consensus 3 ~F~~~l~~~~~~~~~l~~~~~avfGlGds-~Y-~~fc~~~~~l~~~l~~lGa~~~~~~ 58 (556)
.|++.|... .++|+++++||+||+ .| ++||.+.+.++++|+++||+.+...
T Consensus 66 ~fl~~l~~~-----~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~ 118 (167)
T TIGR01752 66 DFLPTLEEL-----DFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFW 118 (167)
T ss_pred HHHHHhhcC-----CCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEcee
Confidence 466655433 389999999999998 58 4999999999999999999987543
No 97
>PRK09271 flavodoxin; Provisional
Probab=98.26 E-value=2.4e-06 Score=79.56 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=56.6
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCc--hHHHHHHHHHHHHHHhcCCeEeeccccccCCCCC-CchhhHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGY--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPS-GYEGALDPWM 77 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y--~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~-~~~~~~~~W~ 77 (556)
+..|+++|.... .++++++|||+||+.| ++||.+++.++++|... .+..+.+..... ...+.+..|.
T Consensus 71 ~~~f~~~l~~~~-----~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l~~~~~p~~~~d~~~~~~~~ 140 (160)
T PRK09271 71 MKRFIAELAETI-----GKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRLKIEQMPHGERDAAAIDNWT 140 (160)
T ss_pred HHHHHHHHHHHh-----ccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCceeeecCCccchhHHHHHHHH
Confidence 467888887643 4678999999999999 79999999999999864 244444543222 1347889999
Q ss_pred HHHHHHH
Q 008731 78 RSLWRRL 84 (556)
Q Consensus 78 ~~~~~~l 84 (556)
.++++.+
T Consensus 141 ~~~~~~~ 147 (160)
T PRK09271 141 DKVLALC 147 (160)
T ss_pred HHHHHHh
Confidence 9999888
No 98
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=98.14 E-value=4.8e-06 Score=75.68 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCc--hHHHHHHHHHHHHHHhcCCeEeeccccccCCCCC-CchhhHHHHHH
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGY--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPS-GYEGALDPWMR 78 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y--~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~-~~~~~~~~W~~ 78 (556)
+.|+++|. .++++|||||+||+.| ++||.+++.++++|++++ |..+.+....+ .....+..|.+
T Consensus 71 ~~fl~~l~--------~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~-----~~~~i~~~~~~~~d~~~~~~~~~ 137 (140)
T TIGR01754 71 KDFIAELG--------YKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSH-----PVLKIEQMPHGEQDGRAIYDWLE 137 (140)
T ss_pred HHHHHHhc--------ccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcC-----CceeEecCCcccccHHHHHHHHH
Confidence 45666653 2678999999999999 689999999999998763 33333433221 13467889988
Q ss_pred HH
Q 008731 79 SL 80 (556)
Q Consensus 79 ~~ 80 (556)
++
T Consensus 138 ~~ 139 (140)
T TIGR01754 138 GV 139 (140)
T ss_pred Hh
Confidence 75
No 99
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=98.14 E-value=5.1e-07 Score=76.73 Aligned_cols=65 Identities=23% Similarity=0.289 Sum_probs=53.4
Q ss_pred CchhHHHhhcCC---CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCC
Q 008731 319 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 395 (556)
Q Consensus 319 ~p~~~l~~~lp~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~ 395 (556)
.|+|++...++. ...|+|||+|.+. ..+.++|+|+. ...|..|+||+++++ |+.|.+++|.|.|.
T Consensus 31 ~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~---------~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~ 98 (99)
T PF00970_consen 31 KPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKR---------YPNGRVSRYLHQLKP--GDEVEIRGPYGNFT 98 (99)
T ss_dssp TTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEE---------CTTSHHHHHHHTSCT--TSEEEEEEEESSEE
T ss_pred CcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEe---------ccCCHHHHHHHhCCC--CCEEEEEEcccccC
Confidence 467777777772 3569999999995 35799999954 468999999999999 99999999999985
No 100
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.11 E-value=4.5e-06 Score=96.08 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=71.9
Q ss_pred CHHHHhhhCCCC---CCchhHHHhhcC-----CC-CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc
Q 008731 306 TVLEVLEDFPSV---QMPIDWLVQLVP-----PL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG 376 (556)
Q Consensus 306 ~~~d~l~~f~s~---~~p~~~l~~~lp-----~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~ 376 (556)
+++.+....|.+ .-|+|++....+ .+ .||++||++.... .+.++|+|.+| |.+|.+|++
T Consensus 804 ~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvV-----------GkgT~~Ls~ 871 (1028)
T PRK06567 804 KTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEV-----------GKSTSLCKT 871 (1028)
T ss_pred CEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEE-----------ChHHHHHhc
Confidence 444444445531 248887766653 22 6789999998653 47899999765 999999999
Q ss_pred cCCCCCceEEEEeecCC-CCCCCCCCCeEEEcCCCCchh
Q 008731 377 LDPQQGIYIPAWFQKGS-LPRPPPSVPLILIGPGTGCAP 414 (556)
Q Consensus 377 l~~~~G~~v~v~~~~g~-F~lp~~~~piimIa~GTGIAP 414 (556)
+++ |+.|.+.+|.|+ |..+. .+.+++||+|+|+||
T Consensus 872 l~~--Gd~v~v~GPLG~pF~i~~-~k~vLLVgGGVGiAp 907 (1028)
T PRK06567 872 LSE--NEKVVLMGPTGSPLEIPQ-NKKIVIVDFEVGNIG 907 (1028)
T ss_pred CCC--CCEEEEEcccCCCCCCCC-CCeEEEEEccccHHH
Confidence 999 999999999885 77753 357999999999997
No 101
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.03 E-value=2.5e-05 Score=88.16 Aligned_cols=124 Identities=20% Similarity=0.334 Sum_probs=85.6
Q ss_pred chhHHHhhcCC---CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccC----C--CC----CceE
Q 008731 320 PIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLD----P--QQ----GIYI 385 (556)
Q Consensus 320 p~~~l~~~lp~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~----~--~~----G~~v 385 (556)
|+|++...+|. ++-.+|||+|+| .++.+.+.|+.. |--|.-|. .+. + .+ .-++
T Consensus 384 ~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~~i 450 (646)
T KOG0039|consen 384 PGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFPKI 450 (646)
T ss_pred CCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCceE
Confidence 57887777775 578999999999 468999999643 44454443 111 1 01 3468
Q ss_pred EEEeecCCCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCC-------------CCCCEEEEEcccCCCcc-ccHH
Q 008731 386 PAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-------------PAAPIIFFFGCRNEDDF-LYRE 450 (556)
Q Consensus 386 ~v~~~~g~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~-------------~~~~~~L~~G~R~~~d~-ly~~ 450 (556)
.+.+|.|.=.-. ..-.-++|||+|.|++||.|++++.......+ ..+++..++-||...++ .|.+
T Consensus 451 ~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~ 530 (646)
T KOG0039|consen 451 LIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFKG 530 (646)
T ss_pred EEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHHHH
Confidence 888898854333 33346799999999999999999999754321 23667777778887755 4566
Q ss_pred HHHHhH
Q 008731 451 LWLSHS 456 (556)
Q Consensus 451 el~~~~ 456 (556)
.+.+..
T Consensus 531 ~l~~v~ 536 (646)
T KOG0039|consen 531 LLTEVE 536 (646)
T ss_pred HHHHHH
Confidence 665555
No 102
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=97.76 E-value=3.7e-05 Score=68.16 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=27.8
Q ss_pred ceEEEEEecCCCc-hHHHHHHHHHHHHHHh
Q 008731 21 VRYAVFGLGDSGY-QKFNFVAKKLDNRLLD 49 (556)
Q Consensus 21 ~~~avfGlGds~Y-~~fc~~~~~l~~~l~~ 49 (556)
+.+||||+||++| ++||.|++.+.+++..
T Consensus 64 ~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 64 LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 7899999999999 8999999999999988
No 103
>PRK09267 flavodoxin FldA; Validated
Probab=97.56 E-value=0.0003 Score=65.96 Aligned_cols=48 Identities=33% Similarity=0.376 Sum_probs=39.5
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEEEecCC-Cc-hHHHHHHHHHHHHHHhcCCeEe
Q 008731 3 VFWRFLLQKSLSKQWLEGVRYAVFGLGDS-GY-QKFNFVAKKLDNRLLDLGATAV 55 (556)
Q Consensus 3 ~F~~~l~~~~~~~~~l~~~~~avfGlGds-~Y-~~fc~~~~~l~~~l~~lGa~~~ 55 (556)
.|++.+... .|+|+++++||+||+ .| ++||.+.+.+++.|+..|++.+
T Consensus 68 ~fl~~~~~~-----~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 68 DFLPELEEI-----DFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HHHHHHhcC-----CCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEE
Confidence 455555333 389999999999998 48 5899999999999999999865
No 104
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.0032 Score=62.68 Aligned_cols=166 Identities=16% Similarity=0.218 Sum_probs=107.3
Q ss_pred CCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCCCCCCCCCeEEEcCC
Q 008731 330 PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPG 409 (556)
Q Consensus 330 ~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~lp~~~~piimIa~G 409 (556)
...+|.|+|.+-... .+++.|-|.+ +...|.+|.|-.+.++ ||+|.+.+|.|.+..+....-++|||==
T Consensus 84 r~~~R~YTiR~~d~~-~~e~~vDfVl--------H~~~gpas~WA~~a~~--GD~l~i~GP~g~~~p~~~~~~~lLigDe 152 (265)
T COG2375 84 RPPQRTYTIRAVDAA-AGELDVDFVL--------HGEGGPASRWARTAQP--GDTLTIMGPRGSLVPPEAADWYLLIGDE 152 (265)
T ss_pred CCCcccceeeeeccc-ccEEEEEEEE--------cCCCCcchhhHhhCCC--CCEEEEeCCCCCCCCCCCcceEEEeccc
Confidence 346899999866432 3555555533 2368999999999999 9999999999997766666789999999
Q ss_pred CCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEecCCCCccchhhhHH
Q 008731 410 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKML 489 (556)
Q Consensus 410 TGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~ 489 (556)
|++=-+.++|++.-.. .+...|.-..+..|. . .+... +.+ ++.....++.. +. .++.
T Consensus 153 tAlPAIa~iLE~lp~~------~~~~a~lev~d~ad~---~---~l~~~-~~l------~~~Wl~r~~~~---~~-~ll~ 209 (265)
T COG2375 153 TALPAIARILETLPAD------TPAEAFLEVDDAADR---D---ELPSP-DDL------ELEWLARDDAP---TE-QLLA 209 (265)
T ss_pred cchHHHHHHHHhCCCC------CceEEEEEeCChHHh---h---ccCCC-Cce------eEEEecCCCcc---ch-HHHH
Confidence 9998888888876543 445777777777654 1 22222 445 55555443322 21 1222
Q ss_pred HcHHHHHHhHcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHH
Q 008731 490 EQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDS 536 (556)
Q Consensus 490 ~~~~~l~~~l~~-~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~ 536 (556)
....+. .+.. +.++||.|-. .+++ +++..+.++.|++...
T Consensus 210 ~a~~~~--~~P~~~~~vwiagE~-~~v~----~~Rk~L~~e~g~dk~~ 250 (265)
T COG2375 210 AALAQA--ALPAGDYYVWIAGEA-SAVK----AIRKFLRNERGFDKSR 250 (265)
T ss_pred HHHhcc--cCCCCceEEEEeccH-HHHH----HHHHHHhhhcCCCHHH
Confidence 221111 1122 4799999997 5555 4555566666665544
No 105
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=97.18 E-value=0.00086 Score=60.38 Aligned_cols=57 Identities=9% Similarity=0.114 Sum_probs=40.4
Q ss_pred CceEEEEEecCCCc-hHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHHH
Q 008731 20 GVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR 82 (556)
Q Consensus 20 ~~~~avfGlGds~Y-~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~~ 82 (556)
...+||||.||++| ++||.+++.+.+++. +--..+.+-..+....+.+..|++++|.
T Consensus 73 ~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~------vp~l~k~El~gt~~Dv~~~~~~~~~~~~ 130 (134)
T PRK03600 73 KLLRGVIASGNRNFGDAFALAGDVISAKCQ------VPLLYRFELSGTNEDVENVRKGVEEFWQ 130 (134)
T ss_pred CcEEEEEEecCchHHHHHHHHHHHHHHHhC------CCeEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999 689999999999977 2122333333322244567788888865
No 106
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=96.39 E-value=0.0055 Score=65.51 Aligned_cols=75 Identities=13% Similarity=0.013 Sum_probs=58.1
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
|..|+++|.... ++|+++|+||+ |..||.+.+.++++|+++|++.+.+.........+...+.++.|.+++
T Consensus 319 ~~~~l~~l~~~~-----~~~K~~a~FGs----ygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~l 389 (394)
T PRK11921 319 TAAILEEIKGLG-----FKNKKAAAFGS----YGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENF 389 (394)
T ss_pred HHHHHHHhhccC-----cCCCEEEEEec----CCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHH
Confidence 356777776654 89999999997 777999999999999999999988766666554433456677888877
Q ss_pred HHHH
Q 008731 81 WRRL 84 (556)
Q Consensus 81 ~~~l 84 (556)
.+.+
T Consensus 390 a~~~ 393 (394)
T PRK11921 390 AESL 393 (394)
T ss_pred HHhh
Confidence 6543
No 107
>PRK02551 flavoprotein NrdI; Provisional
Probab=94.94 E-value=0.025 Score=52.07 Aligned_cols=29 Identities=17% Similarity=0.457 Sum_probs=26.2
Q ss_pred CCceEEEEEecCCCch-HHHHHHHHHHHHH
Q 008731 19 EGVRYAVFGLGDSGYQ-KFNFVAKKLDNRL 47 (556)
Q Consensus 19 ~~~~~avfGlGds~Y~-~fc~~~~~l~~~l 47 (556)
.+..+||||+|+++|- .||.+|+.++++.
T Consensus 93 ~~~~~gVigsGNrNfg~~F~~aa~~ia~~~ 122 (154)
T PRK02551 93 AKRCLGIIGSGNRNFNNQYCLTAKQYAKRF 122 (154)
T ss_pred hhheEEEEeecccHHHHHHHHHHHHHHHHc
Confidence 5788999999999995 8999999999865
No 108
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=94.69 E-value=0.059 Score=59.10 Aligned_cols=75 Identities=13% Similarity=0.002 Sum_probs=58.4
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
|++|++.|.... ++|+++++||. |.-+|.+++.+.++|+++|++.+ +...+....++...+.+..+.++|
T Consensus 323 ~~~fl~~l~~~~-----l~gK~~~vFGS----ygw~g~a~~~~~~~l~~~g~~~~-~~l~~~~~P~ee~~~~~~~~g~~l 392 (479)
T PRK05452 323 IAGLLEEITGLR-----FRNKRASAFGS----HGWSGGAVDRLSTRLQDAGFEMS-LSLKAKWRPDQDALELCREHGREI 392 (479)
T ss_pred HHHHHHHhhccC-----cCCCEEEEEEC----CCcCcHHHHHHHHHHHHCCCEEe-ccEEEEecCCHHHHHHHHHHHHHH
Confidence 457777776554 89999999997 55689999999999999999985 556666655444556677888888
Q ss_pred HHHHh
Q 008731 81 WRRLH 85 (556)
Q Consensus 81 ~~~l~ 85 (556)
.+.+.
T Consensus 393 a~~~~ 397 (479)
T PRK05452 393 ARQWA 397 (479)
T ss_pred HHHHh
Confidence 87776
No 109
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=94.03 E-value=0.024 Score=59.84 Aligned_cols=63 Identities=41% Similarity=0.571 Sum_probs=58.0
Q ss_pred EEEecCCCch------HHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHHHHHhhh
Q 008731 25 VFGLGDSGYQ------KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQI 87 (556)
Q Consensus 25 vfGlGds~Y~------~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~~~l~~~ 87 (556)
|||+||+.|- +|++-.+.+..+|.+++|..+..++.|++++.+++......|...+|+++..-
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~ 69 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKG 69 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCC
Confidence 6999999982 59999999999999999999999999999999999999999999999998653
No 110
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=90.72 E-value=0.15 Score=44.86 Aligned_cols=53 Identities=15% Similarity=0.269 Sum_probs=30.9
Q ss_pred CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCC
Q 008731 331 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 394 (556)
Q Consensus 331 ~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F 394 (556)
-..|.|||.+.... .+++.|-|.+ +...|.+|.|..+.++ ||.|.+.+|.|.|
T Consensus 65 p~~R~YTvR~~d~~-~~~l~iDfv~--------Hg~~Gpas~WA~~A~p--Gd~v~v~gP~g~~ 117 (117)
T PF08021_consen 65 PVMRTYTVRRFDPE-TGELDIDFVL--------HGDEGPASRWARSARP--GDRVGVTGPRGSF 117 (117)
T ss_dssp -EEEEEE--EEETT---EEEEEEE----------SS--HHHHHHHH--T--T-EEEEEEEE---
T ss_pred CCCCCcCEeeEcCC-CCEEEEEEEE--------CCCCCchHHHHhhCCC--CCEEEEeCCCCCC
Confidence 46899999987532 3566666543 1334999999999999 9999999999877
No 111
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=90.58 E-value=0.32 Score=49.14 Aligned_cols=42 Identities=29% Similarity=0.623 Sum_probs=37.4
Q ss_pred eEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeeEEccCC
Q 008731 162 MIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 203 (556)
Q Consensus 162 v~~~~~Lt~~~~~~~v~~i~l~~~~-~~~~y~~GD~l~i~p~N 203 (556)
++.++++|++++.+++++++|++++ ....|+||.++.|.+++
T Consensus 2 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 44 (267)
T cd06182 2 ITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN 44 (267)
T ss_pred ccccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCC
Confidence 5678999999999999999999984 67899999999998764
No 112
>PRK05569 flavodoxin; Provisional
Probab=88.35 E-value=1.2 Score=39.92 Aligned_cols=70 Identities=13% Similarity=0.064 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
+.|++.|.... ++|+++++||.+...+ +.+.+.+.+.|++.|++.+.+ .......+....+.+..|..++
T Consensus 70 ~~~~~~l~~~~-----~~~K~v~~f~t~g~~~---~~~~~~~~~~l~~~g~~~~~~-~~~~~~p~~~~~~~~~~~g~~l 139 (141)
T PRK05569 70 APFLDQFKLTP-----NENKKCILFGSYGWDN---GEFMKLWKDRMKDYGFNVIGD-LAVNESPNKEELNSAKELGKKL 139 (141)
T ss_pred HHHHHHhhccC-----cCCCEEEEEeCCCCCC---CcHHHHHHHHHHHCCCeEeee-EEEccCCCHHHHHHHHHHHHHH
Confidence 45666664333 6899999999865443 456778899999999987654 3332222222334445555544
No 113
>PRK05568 flavodoxin; Provisional
Probab=87.32 E-value=1.5 Score=39.37 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=37.0
Q ss_pred CCCceEEEEEe-cCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 18 LEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 18 l~~~~~avfGl-Gds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
++++++++||. |++. ..+.+.+.+.|+++|++.+.+........+....+.+..|..++
T Consensus 80 ~~~k~~~~f~t~G~~~----~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~l~~~~~~g~~l 139 (142)
T PRK05568 80 VKGKKLVLFGSYGWGD----GEWMRDWVERMEGYGANLVNEGLIVNNTPEGEGIEKCKALGEAL 139 (142)
T ss_pred hCCCEEEEEEccCCCC----ChHHHHHHHHHHHCCCEEeCCcEEEecCCCHHHHHHHHHHHHHH
Confidence 68999999998 3321 23568889999999998876633332222222334455665554
No 114
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=83.07 E-value=0.2 Score=42.94 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=0.0
Q ss_pred CchhHHHhhcCCC-----CccccccCCCCCCCCCEEEEEEE
Q 008731 319 MPIDWLVQLVPPL-----KTRAFSISSSPLAHPNQVHLTVS 354 (556)
Q Consensus 319 ~p~~~l~~~lp~~-----~pR~YSIaSsp~~~~~~i~l~v~ 354 (556)
-|+|++...+|.+ +..+|||+|+|. .+.+.|+|+
T Consensus 31 ~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik 69 (105)
T PF08022_consen 31 KPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIK 69 (105)
T ss_dssp -----------------------------------------
T ss_pred CCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEE
Confidence 4789888888864 566999999996 588888884
No 115
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=80.34 E-value=3.5 Score=44.42 Aligned_cols=49 Identities=24% Similarity=0.379 Sum_probs=41.0
Q ss_pred CCccee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCC
Q 008731 155 KAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 203 (556)
Q Consensus 155 ~~~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N 203 (556)
..+++. +|++|++||+.+...++++|.|+.++....|+||.++.|.++.
T Consensus 139 ~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg 188 (411)
T TIGR03224 139 VKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPG 188 (411)
T ss_pred CCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCC
Confidence 344466 9999999998877789999999987546889999999998753
No 116
>PRK06242 flavodoxin; Provisional
Probab=79.54 E-value=5.2 Score=36.13 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=30.4
Q ss_pred CCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeec
Q 008731 18 LEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 57 (556)
Q Consensus 18 l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~ 57 (556)
+.++++++||.+......+ .+.+.+.|+.+|++.+..
T Consensus 72 ~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 72 VSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGE 108 (150)
T ss_pred hcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEE
Confidence 5789999999988765433 789999999999998755
No 117
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=72.04 E-value=2.9 Score=36.93 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCch-HHHHHHHHHHHHH
Q 008731 21 VRYAVFGLGDSGYQ-KFNFVAKKLDNRL 47 (556)
Q Consensus 21 ~~~avfGlGds~Y~-~fc~~~~~l~~~l 47 (556)
.-.+|.|.|+++|- .||.+|+.+.++.
T Consensus 73 ~l~GVigSGNrNfg~~f~~aa~~ia~ky 100 (122)
T PF07972_consen 73 LLRGVIGSGNRNFGDNFCLAADKIAEKY 100 (122)
T ss_dssp GEEEEEEEE-GGGGGGTTHHHHHHHHHH
T ss_pred hheeEEecCCcHHHHHHHHHHHHHHHHc
Confidence 34579999999995 8999999998875
No 118
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=60.85 E-value=18 Score=36.67 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=36.0
Q ss_pred EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccC
Q 008731 161 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 202 (556)
Q Consensus 161 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~ 202 (556)
+|++++.+|+++...++++++|+.+ ..+.|+||.++.|.++
T Consensus 12 ~v~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~pGQ~v~l~~~ 52 (286)
T cd06208 12 KVVSNTRLTGPDAPGEVCHIVIDHG-GKLPYLEGQSIGIIPP 52 (286)
T ss_pred EEEeceeccCCCCCcceEEEEEeCC-CcccccCCceEEEECC
Confidence 8999999998766678999999985 5789999999999865
No 119
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=59.26 E-value=19 Score=37.08 Aligned_cols=45 Identities=9% Similarity=0.256 Sum_probs=37.5
Q ss_pred cee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCC
Q 008731 158 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 203 (556)
Q Consensus 158 ~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N 203 (556)
.+. +|++.+.++.+.+..++++|+|+.+ ..+.|+||.++.|.++.
T Consensus 24 ~~~~~V~~i~~~~~p~~~~~v~~l~l~~~-~~~~f~aGQy~~l~~~~ 69 (307)
T PLN03116 24 PYTATIVSVERIVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPG 69 (307)
T ss_pred CEEEEEEeeEEcccCCCCCceEEEEEecC-CCCceecCceEeeeCCC
Confidence 345 9999999986665678999999987 57899999999998763
No 120
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=57.41 E-value=12 Score=34.69 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=37.5
Q ss_pred CCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCC
Q 008731 18 LEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQ 64 (556)
Q Consensus 18 l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~ 64 (556)
+...+++|+=.||+....++..+..+.++|++.|+....-..-.|+.
T Consensus 2 ~~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~ 48 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDI 48 (163)
T ss_pred CCccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCH
Confidence 45689999999999988899999999999999999754333333443
No 121
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=51.17 E-value=27 Score=31.40 Aligned_cols=59 Identities=14% Similarity=0.274 Sum_probs=38.9
Q ss_pred CceEEEEEecCCCch-HHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHHHHH
Q 008731 20 GVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 84 (556)
Q Consensus 20 ~~~~avfGlGds~Y~-~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~~~l 84 (556)
..--+|.|.|+++|- .||.||+.+.+++ |--.|+..-+.-.. ..-..+.+|+.++|+..
T Consensus 74 ~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~FEL~GT~---~Dv~~v~~~v~~~~~~~ 133 (141)
T COG1780 74 ALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRFELLGTA---EDVAAVRKGVTEFWKRA 133 (141)
T ss_pred hheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEEeccCCH---HHHHHHHHHHHHHHHhC
Confidence 355689999999995 8999999998765 33333322111111 12356778988888754
No 122
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=49.68 E-value=32 Score=33.97 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=31.1
Q ss_pred eEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCC
Q 008731 162 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 203 (556)
Q Consensus 162 v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N 203 (556)
+..+.++++.....++++|+|+.++....|+||.++.|.+++
T Consensus 3 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 3 LQARVLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred eEeeeecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 445555555443348999999987556899999999998764
No 123
>PRK07116 flavodoxin; Provisional
Probab=47.63 E-value=61 Score=29.69 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=31.7
Q ss_pred CCCceEEEEEe-cCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 18 LEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 18 l~~~~~avfGl-Gds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
+++.++++|++ |.+.+ +.+...+.+.+.+.+ +.+-...+.+. .+..++.|++++
T Consensus 104 l~~k~v~~f~T~g~~~~---g~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~i~~wl~~~ 158 (160)
T PRK07116 104 FSGKTVIPFATSGGSGI---GNAEKELKKSYPDAN---WKEGRLLNGGA---SKEEIKEWINKL 158 (160)
T ss_pred CCCCEEEEEEeCCCCCc---CcHHHHHHHHCCcCc---cccCeeecCCC---cHHHHHHHHHHc
Confidence 78999999999 76654 444555555543332 22222222211 345799998764
No 124
>KOG4723 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.03 E-value=97 Score=29.90 Aligned_cols=115 Identities=8% Similarity=0.030 Sum_probs=67.5
Q ss_pred CCEEEEEcccCCC-ccccHHHHHHhHhcCCCccccCCCcEEEEEecCCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCC
Q 008731 432 APIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGS 510 (556)
Q Consensus 432 ~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~ 510 (556)
++++|+-+||... .|++..-|..+.+. . .+ ..++||++.=+.-..+-..+.- ++.-.-.+|..||+=|-
T Consensus 19 gkltLl~d~~eT~gsFl~H~~l~~~Lka-n-~~-----~cFlaf~k~fshy~i~~rKlG~---~l~t~k~rgqlvF~dgl 88 (248)
T KOG4723|consen 19 GKLTLLLDTRETPGSFLFHYYLYHALKA-N-ES-----TCFLAFSKTFSHYAISMRKLGM---DLKTKKNRGQLVFIDGL 88 (248)
T ss_pred ccEEEEeecccCCceeeHHHHHHHHHhc-C-Cc-----EEEEEeecchhHHHHHHHHhCC---ceeecccCCcEEEEhhh
Confidence 8999999999877 99999999888776 2 33 6899999864421111111111 11000012667888775
Q ss_pred CCccHHHHHHHH------HHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeccC
Q 008731 511 ATKMPSDVWSTF------EEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 556 (556)
Q Consensus 511 ~~~m~~~v~~~L------~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvws 556 (556)
...+...+.++- +..+...++-.-...+++.++..+.=+..+|+|+
T Consensus 89 ~~~~~~i~~q~~kq~~~t~~~~~a~~~~ni~~v~e~~rE~~~~v~~~e~i~~ 140 (248)
T KOG4723|consen 89 SMLFAPISKQSKKQAPETKNHIKAVFAPNIQCVEENDREFENSVIIIEDIDI 140 (248)
T ss_pred hhhhCccchhhhhcCchhHHHHHhhcCcchhHHHHHHHHHhhheeeeeeeec
Confidence 422211122221 2222223333445556788888888899999995
No 125
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=44.25 E-value=53 Score=27.06 Aligned_cols=37 Identities=19% Similarity=0.485 Sum_probs=28.4
Q ss_pred EeEeeeecCCCCCCCcEEEEEEEecC--CCccccCCCeeEEccC
Q 008731 161 KMIKNQPLTKSGSGKDVHHFEFEFVS--AAIEYEVGDVLEILPS 202 (556)
Q Consensus 161 ~v~~~~~Lt~~~~~~~v~~i~l~~~~--~~~~y~~GD~l~i~p~ 202 (556)
+|++.+.+++ ++++++|.+++ ..+.|+||.++.|.-+
T Consensus 3 ~v~~~~~~s~-----~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 3 KVVEIEELSP-----DVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEESS-----SEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEeCC-----CeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 6788888874 68899999883 2478999999999876
No 126
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=42.41 E-value=57 Score=31.17 Aligned_cols=55 Identities=18% Similarity=-0.034 Sum_probs=41.5
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEee
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 56 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~ 56 (556)
++.|++++..... ...|.|+.+++|+.+....--...+-..+...|..+|...+-
T Consensus 87 lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~ 141 (197)
T TIGR01755 87 MRNFLDQTGGLWA-SGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVP 141 (197)
T ss_pred HHHHHHhcccccc-ccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeC
Confidence 4678888765432 235899999999998777666777777888888999997653
No 127
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=37.41 E-value=71 Score=26.97 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=38.3
Q ss_pred CCceEEEEEecCC---CchHHHHHHHHHHHHHHhcCCeEeeccccccCCCC
Q 008731 19 EGVRYAVFGLGDS---GYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHP 66 (556)
Q Consensus 19 ~~~~~avfGlGds---~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~ 66 (556)
+|++|-+=.+|=. .|+.-..+.++.++.+.+.||.|++-..+.|...+
T Consensus 31 sGl~y~~~pm~T~IEGe~dev~~~i~~~~e~~~~~G~~Rv~t~ikid~R~d 81 (97)
T TIGR00106 31 SGLKYELHPMGTLIEGDLDELFEAIKAIHEAVLEKGSDRVYTSIKIDTRTD 81 (97)
T ss_pred cCCCeEecCCccEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecCC
Confidence 4566655444433 38998899999999999999999999999998865
No 128
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=36.63 E-value=32 Score=30.59 Aligned_cols=42 Identities=26% Similarity=0.251 Sum_probs=32.1
Q ss_pred eEEEEEecCCCc--hHHHHHHHHHHHHHHhcCCeEeeccccccC
Q 008731 22 RYAVFGLGDSGY--QKFNFVAKKLDNRLLDLGATAVVERGLGDD 63 (556)
Q Consensus 22 ~~avfGlGds~Y--~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~ 63 (556)
+++|+..||.-+ ..++..+..+.++|++.|.+........|+
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd 44 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDD 44 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCC
Confidence 578999999876 357888999999999999886544333343
No 129
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=34.39 E-value=71 Score=30.63 Aligned_cols=32 Identities=47% Similarity=0.613 Sum_probs=27.7
Q ss_pred CCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEe
Q 008731 16 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 55 (556)
Q Consensus 16 ~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~ 55 (556)
..++|++++|.|+|. +|..+-+.|.+.|++.+
T Consensus 24 ~~l~gk~v~I~G~G~--------vG~~~A~~L~~~G~~Vv 55 (200)
T cd01075 24 DSLEGKTVAVQGLGK--------VGYKLAEHLLEEGAKLI 55 (200)
T ss_pred CCCCCCEEEEECCCH--------HHHHHHHHHHHCCCEEE
Confidence 458999999999994 68889999999999765
No 130
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=34.18 E-value=33 Score=30.97 Aligned_cols=54 Identities=22% Similarity=0.118 Sum_probs=37.3
Q ss_pred ceEEEEEecCCCc---------hHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHH
Q 008731 21 VRYAVFGLGDSGY---------QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPW 76 (556)
Q Consensus 21 ~~~avfGlGds~Y---------~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W 76 (556)
.+++|+-.||.-+ ..++..+..+.++|++.|++...-....|+.+. ..+.+..|
T Consensus 1 prv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~--i~~~l~~~ 63 (144)
T TIGR00177 1 PRVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEE--IREILRKA 63 (144)
T ss_pred CEEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHH--HHHHHHHH
Confidence 3789999999866 247888889999999999986544444454421 44444444
No 131
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=33.14 E-value=1.6e+02 Score=27.22 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEe
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 55 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~ 55 (556)
|.|++|+.. ..|.++.+++++.| ..+..+-..-..+...|..+||..+
T Consensus 85 K~~iD~~~~-----~~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~ 132 (171)
T TIGR03567 85 KALLDLLPQ-----RALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHI 132 (171)
T ss_pred HHHHHhCCh-----hhhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccc
Confidence 678888742 24889999999888 4565555544568899999999644
No 132
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=31.19 E-value=54 Score=29.86 Aligned_cols=44 Identities=23% Similarity=0.196 Sum_probs=34.3
Q ss_pred ceEEEEEecCCCch--HHHHHHHHHHHHHHhcCCeEeeccccccCC
Q 008731 21 VRYAVFGLGDSGYQ--KFNFVAKKLDNRLLDLGATAVVERGLGDDQ 64 (556)
Q Consensus 21 ~~~avfGlGds~Y~--~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~ 64 (556)
++++|+-.||..+. -++..+..+.++|++.|++........|+.
T Consensus 1 ~~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~ 46 (152)
T cd00886 1 LRAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDK 46 (152)
T ss_pred CEEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCH
Confidence 47899999998775 688888899999999999865444444543
No 133
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=31.08 E-value=23 Score=36.10 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=37.8
Q ss_pred CCcc-ccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCc---ccCCCCccCCCccccccHHHHHHhcccccC
Q 008731 187 AAIE-YEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEM---KNYLPDIHKNTTEVPIKLRTFVELTMDVTS 260 (556)
Q Consensus 187 ~~~~-y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~---~~~~~~~~~~~~~~~~tl~~~l~~~~Dl~~ 260 (556)
++.. ++||||+-..+.|...--. .--.+.++.+.+...-. ..++. -.|||...+|++|+||+.
T Consensus 94 s~vkgfk~Gd~VIp~~a~lGtW~t----~~v~~e~~Li~vd~~~pl~~AAT~~-------VNP~TAyrmL~dfv~L~~ 160 (354)
T KOG0025|consen 94 SNVKGFKPGDWVIPLSANLGTWRT----EAVFSESDLIKVDKDIPLASAATLS-------VNPCTAYRMLKDFVQLNK 160 (354)
T ss_pred CCcCccCCCCeEeecCCCCcccee----eEeecccceEEcCCcCChhhhheec-------cCchHHHHHHHHHHhcCC
Confidence 3444 9999999999998642211 11123344444432111 01221 268999999999999976
No 134
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=28.06 E-value=1.1e+02 Score=28.43 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=28.2
Q ss_pred CCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEe
Q 008731 13 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 55 (556)
Q Consensus 13 ~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~ 55 (556)
.....|.|.+++|+|+|. .|+.+.++|+.+|++.+
T Consensus 29 ~~~~~l~g~tvgIiG~G~--------IG~~vA~~l~~fG~~V~ 63 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGYGR--------IGRAVARRLKAFGMRVI 63 (178)
T ss_dssp TTBS-STTSEEEEESTSH--------HHHHHHHHHHHTT-EEE
T ss_pred CCccccCCCEEEEEEEcC--------CcCeEeeeeecCCceeE
Confidence 344468999999999984 79999999999999765
No 135
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=26.97 E-value=1.3e+02 Score=28.33 Aligned_cols=45 Identities=13% Similarity=0.201 Sum_probs=36.7
Q ss_pred ccHHHHHHhcccccCCCCcHHHHHHHHHh-cCChhHHHHHHhhcCccCH
Q 008731 246 IKLRTFVELTMDVTSASPRRYFFEVMSYF-ATAEHEKERLQYFASPEGR 293 (556)
Q Consensus 246 ~tl~~~l~~~~Dl~~~~p~~~~l~~la~~-~~~~~~k~~L~~l~s~~~~ 293 (556)
-++.+=|..++|| +|...+......| ..|++=++.+.+|.+.+-.
T Consensus 2 ~~L~~d~~dfl~l---Ip~~~i~~i~~~Y~~~D~efq~~~~yl~s~~f~ 47 (179)
T PF06757_consen 2 RSLQEDFQDFLDL---IPMEEIQDIVQRYYLEDAEFQAAVRYLNSSEFK 47 (179)
T ss_pred hhHHHHHHHHHHh---cCHHHHHHHHHHHHHcCHHHHHHHHHHcChHHH
Confidence 3677888888888 8999988888877 7898999999999876543
No 136
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=26.88 E-value=2.5e+02 Score=25.09 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=46.8
Q ss_pred CCceEEEEEecCC------------------------CchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCC-CchhhH
Q 008731 19 EGVRYAVFGLGDS------------------------GYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPS-GYEGAL 73 (556)
Q Consensus 19 ~~~~~avfGlGds------------------------~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~-~~~~~~ 73 (556)
....||.+.+|+- .-.+|-.++..+...|.++| +|.+.|+....+ ..-...
T Consensus 46 pp~~~a~lalGS~GR~E~~~~sDqD~alv~~d~~~~~~~~~f~~~a~~~~~~L~~~G----~~~C~g~vmasnp~W~~s~ 121 (138)
T PF03445_consen 46 PPVPFAWLALGSYGRREQTLYSDQDNALVFEDEESEEDRAYFEAFAERLVDALDECG----FPPCPGGVMASNPRWRGSL 121 (138)
T ss_pred CCCCEEEEEECcccccCCCcCccccceeeecCccchhHHHHHHHHHHHHHHHHHHcC----CCCCCCCcCccChhhCcCH
Confidence 4678999988874 12479999999999999999 466666655433 244678
Q ss_pred HHHHHHHHHHHhh
Q 008731 74 DPWMRSLWRRLHQ 86 (556)
Q Consensus 74 ~~W~~~~~~~l~~ 86 (556)
..|.+.+-..+..
T Consensus 122 ~~W~~~~~~w~~~ 134 (138)
T PF03445_consen 122 SEWREQLRRWIDN 134 (138)
T ss_pred HHHHHHHHHHHhC
Confidence 8998887766543
No 137
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=26.71 E-value=2e+02 Score=27.28 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=37.0
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEe
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 55 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~ 55 (556)
+|.|++|+.. ..|.|+.+++++.| ....+.-..-..+...|..+||..+
T Consensus 85 LKn~iD~l~~-----~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 85 LKTLLDLLPE-----RALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred HHHHHHhCCh-----hhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 3678888832 34899999999998 5555555555678889999999854
No 138
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=23.96 E-value=1.8e+02 Score=27.64 Aligned_cols=55 Identities=20% Similarity=0.030 Sum_probs=36.8
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEee
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 56 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~ 56 (556)
++.|++++..... ...|.++.+++||..-+..----..-+.+...|..+|...+-
T Consensus 88 lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~ 142 (200)
T PRK03767 88 MRNFLDQTGGLWA-KGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVG 142 (200)
T ss_pred HHHHHHHhccccc-cCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeC
Confidence 3678888755432 234889999999997665433334455677777889987653
No 139
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=23.58 E-value=1.4e+02 Score=28.74 Aligned_cols=38 Identities=16% Similarity=0.382 Sum_probs=30.0
Q ss_pred EeEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeeEEccCC
Q 008731 161 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 203 (556)
Q Consensus 161 ~v~~~~~Lt~~~~~~~v~~i~l~~~~-~~~~y~~GD~l~i~p~N 203 (556)
+|++++.+++ +++++.|+.+. ....|+||.++.|..++
T Consensus 4 ~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 4 TVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred EEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 6788888874 58899998763 35789999999998654
No 140
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=23.50 E-value=1.2e+02 Score=29.28 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=30.0
Q ss_pred EeEeeeecCCCCCCCcEEEEEEEecCCC-ccccCCCeeEEccCC
Q 008731 161 KMIKNQPLTKSGSGKDVHHFEFEFVSAA-IEYEVGDVLEILPSQ 203 (556)
Q Consensus 161 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~-~~y~~GD~l~i~p~N 203 (556)
+|++++.+++ +++.+.|+.++.. ..|+||.++.|..++
T Consensus 5 ~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (235)
T cd06217 5 RVTEIIQETP-----TVKTFRLAVPDGVPPPFLAGQHVDLRLTA 43 (235)
T ss_pred EEEEEEecCC-----CeEEEEEECCCCCcCCcCCcCeEEEEEec
Confidence 6788888874 5889999987322 789999999998653
No 141
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.37 E-value=2.3e+02 Score=27.97 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=37.5
Q ss_pred EEEEecCCC-----CccchhhhHHHcHHHHHHhH-cCCCEEEEeCCCCccHHHHHHHHHHHHHHh
Q 008731 471 YVAFSRKQP-----QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKE 529 (556)
Q Consensus 471 ~~a~Sr~~~-----~k~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~ 529 (556)
+.|||.+.- +..++.+++.+......+.+ ..+..|-++|+...+++++++++.++-...
T Consensus 53 vYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T 117 (233)
T PRK14841 53 AFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKT 117 (233)
T ss_pred EEeeeHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHh
Confidence 667776542 33444444444333333333 348889999998888889999888876554
No 142
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=23.26 E-value=1.3e+02 Score=28.79 Aligned_cols=38 Identities=18% Similarity=0.437 Sum_probs=30.2
Q ss_pred EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCC
Q 008731 161 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQD 204 (556)
Q Consensus 161 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~ 204 (556)
+|++.+.+|+ +++++.|+.+ ....|+||.++.|..+++
T Consensus 4 ~v~~~~~~~~-----~~~~~~l~~~-~~~~~~pGQ~v~l~~~~~ 41 (218)
T cd06196 4 TLLSIEPVTH-----DVKRLRFDKP-EGYDFTPGQATEVAIDKP 41 (218)
T ss_pred EEEEEEEcCC-----CeEEEEEcCC-CcCCCCCCCEEEEEeeCC
Confidence 6778888874 6899999987 468999999999975543
No 143
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=23.17 E-value=26 Score=19.81 Aligned_cols=9 Identities=56% Similarity=1.076 Sum_probs=6.9
Q ss_pred CCchhhHHH
Q 008731 410 TGCAPFRGF 418 (556)
Q Consensus 410 TGIAPf~s~ 418 (556)
.|++|||+=
T Consensus 6 ~gftpfrgk 14 (19)
T PF06753_consen 6 PGFTPFRGK 14 (19)
T ss_pred CCCCccccc
Confidence 688898864
No 144
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=23.00 E-value=61 Score=27.77 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 008731 513 KMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGR 549 (556)
Q Consensus 513 ~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R 549 (556)
.+...=-.-|.+-+.+.|.++.++|.+|+.+|.++.+
T Consensus 20 a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k 56 (108)
T COG3937 20 AETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAK 56 (108)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3433334445555677899999999999999988765
No 145
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=21.67 E-value=1.8e+02 Score=25.82 Aligned_cols=54 Identities=22% Similarity=0.201 Sum_probs=38.6
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeec
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 57 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~ 57 (556)
++.|++++.. .....+.++.+++++.|-+.+... .+...+...|..+|+..+-.
T Consensus 89 lK~~lD~~~~--~~~~~~~~K~~~~i~~~g~~~g~~-~~~~~l~~~~~~~~~~~~~~ 142 (152)
T PF03358_consen 89 LKNFLDRLSC--WFRRALRGKPVAIIAVGGGRRGGL-RALEQLRQILDYLGMIVVPS 142 (152)
T ss_dssp HHHHHHTHHH--THTTTTTTSEEEEEEEESSSSTTH-HHHHHHHHHHHHTTBEEECC
T ss_pred hhHHHHHhcc--ccccccCCCEEEEEEEecCCcHHH-HHHHHHHHHHHHCCCEEcCC
Confidence 4788999974 112348999999999986655433 35677888888999976533
No 146
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=21.59 E-value=4.9e+02 Score=24.39 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=46.7
Q ss_pred CCCCCceEEEEE-ecCCCc--h-------HHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHHHHH
Q 008731 16 QWLEGVRYAVFG-LGDSGY--Q-------KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 84 (556)
Q Consensus 16 ~~l~~~~~avfG-lGds~Y--~-------~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~~~l 84 (556)
..|.|+++.++- +|...| . .+..+...+...+.-+|.+.+-.....+....+ .++.++++++++.++|
T Consensus 122 ~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 122 GLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYLRGILKFCGIKDVESFSFEGVDNPD-REEALEKALERAAEHL 199 (199)
T ss_dssp ESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHHHHHHHHTTEEEEEEEEEESTTTCC-HHHHHHHHHHHHHHHH
T ss_pred cccccccEEEEEcCCCChHHhcccCCCCCChhhhHHHHHHHHHhCCCceeeEEEEeCCCCCC-hHHHHHHHHHHHHhhC
Confidence 468898887764 665533 1 466677778999999999987665544433222 2677888888887664
No 147
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=21.43 E-value=1.5e+02 Score=25.65 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=54.6
Q ss_pred CeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEecCC-CC
Q 008731 402 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ-PQ 480 (556)
Q Consensus 402 piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~-~~ 480 (556)
.++|+|=-|++--+.+++++.-.. .+...|+-..+.+|..+ |.. . ..+ ++........ ..
T Consensus 3 ~~ll~gDeTalPAi~~iLe~lp~~------~~~~v~iev~~~~d~~~---l~~---~-~~~------~v~wv~r~~~~~~ 63 (119)
T PF04954_consen 3 RYLLVGDETALPAIARILEALPAD------APGTVFIEVPDEADRQP---LPA---P-AGV------EVTWVPRDGPAAQ 63 (119)
T ss_dssp EEEEEEEGGGHHHHHHHHHHS-TT-------EEEEEEEESSGGG--------------TEE------EEEEEE-SS--TT
T ss_pred eEEEEeccccHHHHHHHHHhCCCC------CeEEEEEEECChHhccc---CCC---C-CCC------EEEEEeCCCCCch
Confidence 478999999998899999887422 55777777777666332 222 2 334 5555544332 11
Q ss_pred ccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHH
Q 008731 481 KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 481 k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
..-+.+.+.... .-..+.++++.|.. .+.+.+++.|++
T Consensus 64 ~~~l~~al~~~~-----~~~~~~~vW~AgE~-~~~r~lR~~l~~ 101 (119)
T PF04954_consen 64 GSALADALRDLP-----LPAGDGYVWVAGEA-SAVRALRRHLRE 101 (119)
T ss_dssp -HHHHHHHTTS--------SS-EEEEEEEEH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-----ccCCCeEEEEEecH-HHHHHHHHHHHH
Confidence 112222222211 01248899999997 888888877764
No 148
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.39 E-value=1.7e+02 Score=26.07 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=18.5
Q ss_pred hHHHcHHHHHHhHcCCCEEEEeCCCCccH
Q 008731 487 KMLEQSQRIWNLLLSKASIYVAGSATKMP 515 (556)
Q Consensus 487 ~l~~~~~~l~~~l~~~~~iyvCG~~~~m~ 515 (556)
.|.+..+.+.+.+.+++.||+||+. .-.
T Consensus 20 ~i~~aa~~i~~~~~~gg~i~~~G~G-~S~ 47 (138)
T PF13580_consen 20 AIEKAADLIAEALRNGGRIFVCGNG-HSA 47 (138)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEEST-HHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCc-hhh
Confidence 3444556677777889999999997 443
No 149
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=21.24 E-value=64 Score=25.62 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=15.0
Q ss_pred ccccCCCeeEEccCCCH
Q 008731 189 IEYEVGDVLEILPSQDP 205 (556)
Q Consensus 189 ~~y~~GD~l~i~p~N~~ 205 (556)
-.|++||.+-|+.+|+-
T Consensus 4 ~~~~~GD~VyViYrNPH 20 (75)
T PF11132_consen 4 KPYHAGDIVYVIYRNPH 20 (75)
T ss_pred cccCCCCEEEEEEcCCC
Confidence 36999999999999984
No 150
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=21.18 E-value=1.1e+02 Score=25.53 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=40.3
Q ss_pred CCceEEEEEecCC---CchHHHHHHHHHHHHHHhcCCeEeeccccccCCCC
Q 008731 19 EGVRYAVFGLGDS---GYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHP 66 (556)
Q Consensus 19 ~~~~~avfGlGds---~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~ 66 (556)
+|++|-+-.+|=. .|+.-..+.+.+++.+.+.||.|+.-..+.|+..+
T Consensus 29 sgl~y~v~pm~T~iEGe~dev~~~i~~~~e~~~~~G~~Rv~t~ikId~R~d 79 (92)
T PF01910_consen 29 SGLKYEVGPMGTTIEGELDEVMALIKEAHEALFEAGAKRVVTVIKIDDRRD 79 (92)
T ss_dssp SSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHCTTSSEEEEEEEEEEESS
T ss_pred cCCceEEcCCccEEEecHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEEcCC
Confidence 6788877766543 38899999999999999999999999889888754
No 151
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=21.01 E-value=2e+02 Score=28.00 Aligned_cols=31 Identities=39% Similarity=0.563 Sum_probs=25.6
Q ss_pred CCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEe
Q 008731 17 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 55 (556)
Q Consensus 17 ~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~ 55 (556)
.|.|++++|.|+|+ ++..+-+.|.++|++.+
T Consensus 20 ~l~g~~vaIqGfGn--------VG~~~a~~L~~~G~~vV 50 (217)
T cd05211 20 SLEGLTVAVQGLGN--------VGWGLAKKLAEEGGKVL 50 (217)
T ss_pred CcCCCEEEEECCCH--------HHHHHHHHHHHcCCEEE
Confidence 48999999999885 56777778888899765
No 152
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=20.78 E-value=2.3e+02 Score=21.81 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=20.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCEEE
Q 008731 527 SKEGEASRDSAANWLKALQRAGRYHV 552 (556)
Q Consensus 527 ~~~~~~~~~~a~~~~~~l~~~~Ry~~ 552 (556)
.+..+++...|..+|..|.++|+...
T Consensus 22 A~~~gls~~~aR~yL~~Le~eG~V~~ 47 (62)
T PF04703_consen 22 ADALGLSIYQARYYLEKLEKEGKVER 47 (62)
T ss_dssp HHHHTS-HHHHHHHHHHHHHCTSEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 34457899999999999999998764
No 153
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=20.28 E-value=1.8e+02 Score=28.04 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=29.7
Q ss_pred EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCC
Q 008731 161 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 203 (556)
Q Consensus 161 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N 203 (556)
+|++.+.+|+ +++.+.|..+ ....|+||.++.|..+.
T Consensus 4 ~v~~~~~~t~-----~~~~~~l~~~-~~~~~~pGQ~~~l~~~~ 40 (227)
T cd06213 4 TIVAQERLTH-----DIVRLTVQLD-RPIAYKAGQYAELTLPG 40 (227)
T ss_pred EEEEEeecCC-----CEEEEEEecC-CCCCcCCCCEEEEEeCC
Confidence 6778888874 6888999876 46789999999998754
No 154
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=20.26 E-value=1.2e+02 Score=23.19 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=21.1
Q ss_pred cCCCccccCCCeeEEccCCCHHHHHHHHHHcC
Q 008731 185 VSAAIEYEVGDVLEILPSQDPAAVDTFIQRCN 216 (556)
Q Consensus 185 ~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~ 216 (556)
+..+...++||.|-|... ++.++++.+.||
T Consensus 42 p~~~~~l~~gD~l~v~g~--~~~i~~~~~~~g 71 (71)
T PF02080_consen 42 PDGDTVLQAGDILIVVGD--PEDIERFRELFG 71 (71)
T ss_dssp --TT-BE-TTEEEEEEEE--HHHHHHHHHHT-
T ss_pred CCCCCEECCCCEEEEEEC--HHHHHHHHHhhC
Confidence 335788999999999876 567999988875
Done!