Query 008731
Match_columns 556
No_of_seqs 284 out of 2658
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:25:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe2_A CPR, P450R, NADPH--cyto 100.0 6.2E-96 2E-100 814.8 55.1 518 1-556 90-618 (618)
2 2bpo_A CPR, P450R, NADPH-cytoc 100.0 2.8E-91 9.6E-96 785.4 48.6 521 1-555 118-682 (682)
3 1tll_A Nitric-oxide synthase, 100.0 1.4E-86 4.9E-91 747.2 48.6 500 17-556 132-655 (688)
4 3qfs_A CPR, P450R, NADPH--cyto 100.0 2.9E-82 9.9E-87 678.3 43.6 387 156-556 60-458 (458)
5 2qtl_A MSR;, methionine syntha 100.0 1.3E-78 4.4E-83 663.5 43.4 388 156-556 112-539 (539)
6 4dql_A Bifunctional P-450/NADP 100.0 6.7E-79 2.3E-83 643.5 39.3 375 161-556 10-392 (393)
7 1f20_A Nitric-oxide synthase; 100.0 7E-75 2.4E-79 621.3 41.7 386 158-556 30-434 (435)
8 1ddg_A Sulfite reductase (NADP 100.0 5.4E-73 1.9E-77 595.4 40.6 360 157-555 10-374 (374)
9 2bmw_A Ferredoxin--NADP reduct 100.0 3.4E-37 1.2E-41 315.1 28.1 265 158-555 21-304 (304)
10 1fnb_A Ferredoxin-NADP+ reduct 100.0 1.9E-37 6.5E-42 318.6 25.4 263 159-555 38-314 (314)
11 2b5o_A FNR, ferredoxin--NADP r 100.0 9.2E-36 3.1E-40 316.0 26.3 265 158-555 122-402 (402)
12 3vo2_A Putative uncharacterize 100.0 1.6E-36 5.5E-41 311.2 18.4 212 331-555 86-310 (310)
13 2rc5_A Ferredoxin-NADP reducta 100.0 1.1E-34 3.6E-39 298.0 25.7 211 331-555 91-314 (314)
14 3lo8_A Ferredoxin--NADP reduct 100.0 6E-35 2E-39 299.5 17.6 224 319-555 62-311 (311)
15 3jqq_A Ferredoxin NADP reducta 100.0 4E-33 1.4E-37 286.6 24.9 286 154-555 11-316 (316)
16 1tvc_A Methane monooxygenase c 99.9 2.6E-26 9E-31 227.7 15.3 180 319-524 45-231 (250)
17 2r6h_A NADH:ubiquinone oxidore 99.9 5.5E-26 1.9E-30 230.2 12.9 181 331-525 84-277 (290)
18 1qfj_A Protein (flavin reducta 99.9 6.2E-26 2.1E-30 222.3 12.4 176 319-522 31-213 (232)
19 1fdr_A Flavodoxin reductase; f 99.9 5.1E-26 1.8E-30 225.2 9.9 184 319-525 32-229 (248)
20 2eix_A NADH-cytochrome B5 redu 99.9 8.8E-26 3E-30 222.8 9.4 180 319-525 43-233 (243)
21 1krh_A Benzoate 1,2-dioxygenas 99.9 2.2E-25 7.4E-30 231.0 12.3 178 319-525 140-323 (338)
22 1umk_A B5R, NADH-cytochrome B5 99.9 5E-26 1.7E-30 228.8 6.3 192 319-525 48-265 (275)
23 4fk8_A Ferredoxin--NADP reduct 99.9 4.1E-26 1.4E-30 229.0 4.5 200 319-555 48-268 (271)
24 4eh1_A Flavohemoprotein; struc 99.9 2.4E-25 8.2E-30 219.6 9.5 180 319-525 35-223 (243)
25 2bgi_A Ferredoxin-NADP(H) redu 99.9 3.8E-25 1.3E-29 222.3 8.2 184 319-525 45-248 (272)
26 2qdx_A Ferredoxin reductase; o 99.9 2.8E-25 9.5E-30 221.2 7.0 183 319-524 32-233 (257)
27 1gvh_A Flavohemoprotein; oxido 99.9 1.6E-24 5.6E-29 229.2 11.7 177 319-524 184-377 (396)
28 4g1v_A Flavohemoglobin; three 99.9 3.1E-24 1E-28 227.4 13.3 181 319-525 185-378 (399)
29 1ep3_B Dihydroorotate dehydrog 99.9 3.3E-24 1.1E-28 214.3 10.2 169 319-524 35-211 (262)
30 2cnd_A NADH-dependent nitrate 99.9 1.3E-24 4.5E-29 217.8 5.6 192 319-524 44-258 (270)
31 1cqx_A Flavohemoprotein; globi 99.9 8.5E-24 2.9E-28 224.2 10.3 182 319-525 186-384 (403)
32 2pia_A Phthalate dioxygenase r 99.9 2.3E-23 8E-28 214.3 10.0 172 319-524 40-214 (321)
33 2gpj_A Siderophore-interacting 99.7 4.4E-19 1.5E-23 176.1 4.9 166 319-523 40-211 (252)
34 3lrx_A Putative hydrogenase; a 99.7 8.1E-18 2.8E-22 155.1 6.7 126 377-525 1-135 (158)
35 3lyu_A Putative hydrogenase; t 99.6 1.9E-16 6.6E-21 143.2 8.0 120 385-525 3-130 (142)
36 3a1f_A Cytochrome B-245 heavy 99.6 6.4E-17 2.2E-21 152.0 3.9 133 387-526 3-170 (186)
37 3hr4_A Nitric oxide synthase, 99.6 3.2E-16 1.1E-20 151.1 8.7 85 1-90 106-190 (219)
38 1bvy_F Protein (cytochrome P45 99.3 1.5E-12 5.1E-17 123.5 8.7 81 1-85 86-167 (191)
39 2hna_A Protein MIOC, flavodoxi 99.1 7.2E-12 2.4E-16 113.4 1.4 81 1-84 66-146 (147)
40 1ykg_A SIR-FP, sulfite reducta 99.1 9.5E-11 3.2E-15 108.5 8.5 83 1-89 76-158 (167)
41 3f6r_A Flavodoxin; FMN binding 98.9 1.1E-09 3.7E-14 98.9 4.0 75 2-82 72-146 (148)
42 1f4p_A Flavodoxin; electron tr 98.6 2.9E-08 9.8E-13 89.3 5.3 76 1-82 70-145 (147)
43 2wc1_A Flavodoxin; electron tr 98.5 8.6E-08 2.9E-12 89.6 5.2 82 3-89 77-181 (182)
44 1yob_A Flavodoxin 2, flavodoxi 98.4 2.6E-07 9E-12 86.1 6.3 79 2-85 75-176 (179)
45 2fcr_A Flavodoxin; electron tr 98.4 5.1E-07 1.7E-11 83.6 7.1 78 2-84 70-171 (173)
46 1ag9_A Flavodoxin; electron tr 98.2 1.3E-06 4.6E-11 81.0 6.1 80 2-86 66-169 (175)
47 1obo_A Flavodoxin; electron tr 98.1 3.4E-06 1.2E-10 77.4 6.4 78 2-84 67-167 (169)
48 1czn_A Flavodoxin; FMN binding 98.0 4.9E-06 1.7E-10 76.4 5.7 78 2-84 67-167 (169)
49 2bmv_A Flavodoxin; electron tr 98.0 9.7E-07 3.3E-11 80.9 0.2 75 2-83 65-162 (164)
50 2xod_A NRDI protein, NRDI; fla 97.6 2.6E-05 9E-10 67.4 2.6 58 18-81 59-117 (119)
51 5nul_A Flavodoxin; electron tr 97.5 0.00014 4.9E-09 64.1 6.5 69 2-80 67-135 (138)
52 1rlj_A NRDI protein; flavoprot 97.0 0.00046 1.6E-08 61.3 4.0 59 19-83 71-130 (139)
53 3fni_A Putative diflavin flavo 96.8 0.0013 4.4E-08 59.7 5.2 76 2-86 74-149 (159)
54 3n3a_C Protein NRDI; ribonucle 96.7 0.00059 2E-08 61.2 2.2 58 19-82 92-150 (153)
55 3hly_A Flavodoxin-like domain; 96.6 0.0025 8.4E-08 57.9 6.1 77 2-87 69-145 (161)
56 2fz5_A Flavodoxin; alpha/beta 96.0 0.008 2.7E-07 52.2 5.7 68 2-81 68-135 (137)
57 1ycg_A Nitric oxide reductase; 95.1 0.018 6.2E-07 59.6 5.1 75 1-84 321-396 (398)
58 1e5d_A Rubredoxin\:oxygen oxid 94.7 0.032 1.1E-06 57.8 5.9 77 1-86 322-398 (402)
59 2ohh_A Type A flavoprotein FPR 93.8 0.049 1.7E-06 56.4 5.0 77 1-84 326-402 (404)
60 2q9u_A A-type flavoprotein; fl 90.3 0.29 9.9E-06 50.8 5.7 77 1-86 326-405 (414)
61 2a5l_A Trp repressor binding p 86.3 1.3 4.3E-05 40.6 6.7 55 2-57 91-145 (200)
62 4dik_A Flavoprotein; TM0755, e 80.0 1.4 4.8E-05 45.9 4.6 68 2-81 339-406 (410)
63 3vo2_A Putative uncharacterize 79.2 3.6 0.00012 40.7 7.2 45 158-203 33-78 (310)
64 2vzf_A NADH-dependent FMN redu 76.4 1.5 5.3E-05 40.3 3.3 49 2-56 89-137 (197)
65 3b6i_A Flavoprotein WRBA; flav 72.2 6.3 0.00021 35.7 6.3 53 2-56 88-140 (198)
66 2zki_A 199AA long hypothetical 71.9 4.4 0.00015 36.9 5.2 55 2-57 90-144 (199)
67 3d7n_A Flavodoxin, WRBA-like p 70.1 6.5 0.00022 35.9 5.9 53 2-55 74-126 (193)
68 3klb_A Putative flavoprotein; 69.4 13 0.00045 32.8 7.6 63 4-80 97-160 (162)
69 3gfs_A FMN-dependent NADPH-azo 65.5 5.6 0.00019 35.5 4.3 48 2-56 83-131 (174)
70 1ydg_A Trp repressor binding p 64.5 11 0.00038 34.5 6.4 55 2-57 98-152 (211)
71 1t5b_A Acyl carrier protein ph 61.3 11 0.00037 34.1 5.6 81 2-85 106-196 (201)
72 4ici_A Putative flavoprotein; 59.9 24 0.00082 31.4 7.6 54 18-80 115-168 (171)
73 2ark_A Flavodoxin; FMN, struct 59.5 17 0.00059 32.7 6.6 85 1-88 71-169 (188)
74 3lo8_A Ferredoxin--NADP reduct 55.8 23 0.00079 34.6 7.3 45 158-203 28-73 (311)
75 1mkz_A Molybdenum cofactor bio 51.7 19 0.00064 32.4 5.3 47 18-64 8-54 (172)
76 1rtt_A Conserved hypothetical 49.7 55 0.0019 29.3 8.3 52 2-56 92-143 (193)
77 3k1y_A Oxidoreductase; structu 47.7 12 0.0004 34.4 3.3 51 1-57 104-154 (191)
78 3pzy_A MOG; ssgcid, seattle st 41.5 9 0.00031 34.3 1.4 57 17-76 4-62 (164)
79 4hs4_A Chromate reductase; tri 40.6 1.3E+02 0.0045 27.2 9.4 52 1-55 92-143 (199)
80 3s2u_A UDP-N-acetylglucosamine 37.9 22 0.00076 35.7 3.9 36 400-441 2-39 (365)
81 2pjk_A 178AA long hypothetical 32.6 13 0.00044 33.7 1.0 46 18-63 13-65 (178)
82 1sqs_A Conserved hypothetical 31.2 56 0.0019 30.5 5.3 81 2-86 99-179 (242)
83 3rpe_A MDAB, modulator of drug 30.7 2.1E+02 0.0072 26.4 9.1 70 16-89 136-217 (218)
84 3lcm_A SMU.1420, putative oxid 28.0 85 0.0029 28.3 5.8 85 2-88 93-189 (196)
85 1y5e_A Molybdenum cofactor bio 27.9 39 0.0013 30.1 3.3 46 18-63 11-56 (169)
86 1t0i_A YLR011WP; FMN binding p 27.9 58 0.002 29.0 4.6 46 2-56 104-149 (191)
87 3svl_A Protein YIEF; E. coli C 27.5 2.7E+02 0.0092 24.9 9.2 52 1-55 91-142 (193)
88 3nrs_A Dihydrofolate:folylpoly 27.1 3.6E+02 0.012 27.5 11.1 106 401-522 311-435 (437)
89 3iwt_A 178AA long hypothetical 26.3 27 0.00091 31.3 1.9 46 19-64 14-66 (178)
90 1w78_A FOLC bifunctional prote 26.1 3.8E+02 0.013 27.0 11.1 108 402-524 297-416 (422)
91 1di6_A MOGA, molybdenum cofact 25.6 34 0.0012 31.4 2.5 34 20-53 3-38 (195)
92 2xpn_B SPT6, chromatin structu 25.1 30 0.001 20.4 1.2 12 20-31 3-14 (26)
93 2r6h_A NADH:ubiquinone oxidore 24.8 1.1E+02 0.0036 29.2 6.2 38 161-203 13-51 (290)
94 3fvw_A Putative NAD(P)H-depend 22.0 2.2E+02 0.0076 25.3 7.4 55 1-57 86-145 (192)
95 2amj_A Modulator of drug activ 21.3 4.1E+02 0.014 23.8 9.2 63 16-78 123-197 (204)
96 3ha2_A NADPH-quinone reductase 21.0 2.3E+02 0.0078 25.2 7.2 86 2-89 71-169 (177)
97 1leh_A Leucine dehydrogenase; 20.9 66 0.0022 32.6 3.8 31 17-55 170-200 (364)
98 3kbq_A Protein TA0487; structu 20.8 34 0.0012 30.8 1.4 55 21-77 4-60 (172)
99 3h9d_A ATG8, microtubule-assoc 20.7 3.7E+02 0.013 22.4 8.9 85 383-478 30-116 (119)
No 1
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=100.00 E-value=6.2e-96 Score=814.85 Aligned_cols=518 Identities=33% Similarity=0.593 Sum_probs=440.1
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
|..||++|.... ..|+|++||||||||++|++||.++++++++|+++||++++|++++|++. +++++|+.|.+++
T Consensus 90 ~~~F~~~L~~~~---~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~~g~~D~~~--~~~~~~~~W~~~l 164 (618)
T 3qe2_A 90 AQDFYDWLQETD---VDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDG--NLEEDFITWREQF 164 (618)
T ss_dssp GHHHHHHHHHCC---CCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc---ccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeecccccccCC--CcHHHHHHHHHHH
Confidence 578999998754 23999999999999999999999999999999999999999999999874 4999999999999
Q ss_pred HHHHhhhCCCCCCCCCCcccccchhcCCCceeEEEecccccccccccccchhhhhhhhhhhhccccccccccccCCccee
Q 008731 81 WRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL 160 (556)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (556)
|++|++.++.... + ++. ..+.+.+............. .+... ........ ......++|.
T Consensus 165 ~~~l~~~~~~~~~-~------~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~--~~~~~~~~~~ 224 (618)
T 3qe2_A 165 WLAVCEHFGVEAT-G------EES--SIRQYELVVHTDIDAAKVYM--GEMGR-------LKSYENQK--PPFDAKNPFL 224 (618)
T ss_dssp HHHHHHHHTCCCC----------C--CCCSEEEEECTTCCGGGSBC--SCCSS-------TTTTTSCC--SCCSSSSCEE
T ss_pred HHHHHHHhCCCcc-c------ccc--cccceeEEeccccccccccc--ccccc-------cccccccC--CCcccCCcEE
Confidence 9999998873111 0 111 23456666532110000000 00000 00000000 0111233466
Q ss_pred -EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCCCCccC
Q 008731 161 -KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHK 239 (556)
Q Consensus 161 -~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~~~~ 239 (556)
+|++|++||+ ++.++|+||+|++++++++|+|||||+|+|.|+++.|+++|++||+++++.|+++........ .
T Consensus 225 a~v~~n~~Lt~-~~~~~~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~~~~----~ 299 (618)
T 3qe2_A 225 AAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNK----K 299 (618)
T ss_dssp EEEEEEEECSC-CSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTTCSC----C
T ss_pred EEEEeEEEcCC-CCCCcEEEEEEEcCCCCcccccCCEEEEEcCCCHHHHHHHHHHhCcCCCceEEEecCCccccC----C
Confidence 9999999996 467999999999998899999999999999999999999999999999999999864332111 1
Q ss_pred CCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhc--CccCHHHHHHHHHcCCCCHHHHhhhCCCC
Q 008731 240 NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFA--SPEGRDDLYKYNQKERRTVLEVLEDFPSV 317 (556)
Q Consensus 240 ~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~--s~~~~~~~~~~~~~~~~~~~d~l~~f~s~ 317 (556)
.+++.|+|++++|++|+||++ +|+++||+.||.||+|+.+|++|++|+ +++|+++|.+|+.+++++++|+|.+||++
T Consensus 300 ~~~p~~~tl~~~l~~~~di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps~ 378 (618)
T 3qe2_A 300 HPFPCPTSYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSL 378 (618)
T ss_dssp SSSSSSEEHHHHHHHTBCCSS-CCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTTB
T ss_pred CCCCCceEHHHhhhhEeecCC-CCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHhCCcc
Confidence 237789999999999999999 999999999999999999999999999 67899999999999999999999999999
Q ss_pred CCchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCc-----eEEEEeecC
Q 008731 318 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGI-----YIPAWFQKG 392 (556)
Q Consensus 318 ~~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~-----~v~v~~~~g 392 (556)
++|+++|++++|+++||+|||||+|..++++++|+|++++|+++.++.+.|+||+||+++.+ .|+ +|.+++|.|
T Consensus 379 ~~p~~~l~~~lp~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~-~Gd~~~~~~v~v~~p~g 457 (618)
T 3qe2_A 379 RPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEP-VGENGGRALVPMFVRKS 457 (618)
T ss_dssp CCCHHHHHHHSCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCC-C-----CCEEEEEEECC
T ss_pred CCCHHHHHHhccccccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcc-cCCCCcceEEEEEEecC
Confidence 99999999999999999999999998778999999999999998888899999999998754 166 999999999
Q ss_pred CCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCC-CCCCEEEEEcccCCC-ccccHHHHHHhHhcCCCccccCCCc
Q 008731 393 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGG 469 (556)
Q Consensus 393 ~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~-~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~ 469 (556)
.|++| ++.+|+||||+||||||||||+|++......+ ..++++||||||+++ |++|++||++|.+. |.++ +
T Consensus 458 ~F~lp~~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~-g~l~-----~ 531 (618)
T 3qe2_A 458 QFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRD-GALT-----Q 531 (618)
T ss_dssp SCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHH-TSSS-----E
T ss_pred cccCCCCCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhc-CCCc-----E
Confidence 99999 78899999999999999999999998653322 347899999999996 99999999999988 7776 8
Q ss_pred EEEEEecCCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 008731 470 FYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGR 549 (556)
Q Consensus 470 ~~~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R 549 (556)
++++|||++.+++||||++.++.+.+++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++||
T Consensus 532 l~~a~Srd~~~k~yVqd~l~~~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~a~~~~~~l~~~~R 611 (618)
T 3qe2_A 532 LNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGR 611 (618)
T ss_dssp EEEEETTSSSSCCCHHHHHHHTHHHHHHHHHHTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred EEEEEcCCCCCCCcHHHHHHHhHHHHHHHHhCCcEEEEECCchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999888999999999999999999877999999999769999999999999999999999999999999999999
Q ss_pred EEEeccC
Q 008731 550 YHVEAWS 556 (556)
Q Consensus 550 y~~dvws 556 (556)
|++||||
T Consensus 612 Y~~Dv~s 618 (618)
T 3qe2_A 612 YSLDVWS 618 (618)
T ss_dssp EEEEEEC
T ss_pred eEEeecC
Confidence 9999998
No 2
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=100.00 E-value=2.8e-91 Score=785.42 Aligned_cols=521 Identities=26% Similarity=0.432 Sum_probs=430.2
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
|+.||++|..... ..|+|++||||||||++|++||.+++.++++|+++||+++.+++++|+.. .+.++.|+.|.+++
T Consensus 118 ~~~F~~~l~~~~~--~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~~D~~~-~~~~~~~~~W~~~l 194 (682)
T 2bpo_A 118 AVNFEDFICNAEA--GALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEADDGA-GTTDEDYMAWKDSI 194 (682)
T ss_dssp CHHHHHHHHTCCT--TSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEETTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc--hhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEEEecCC-cccHHHHHHHHHHH
Confidence 5789999987652 34999999999999999999999999999999999999999999999986 56899999999999
Q ss_pred HHHHhhhCCCCCCCCCCcccccchhcCCCceeEEEecc--cccccccccc-cchhhhhhhhhhhhccccccccccccCCc
Q 008731 81 WRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSI--DNAASRLSNA-SDLEGIRMQLETARSMSAGKLSNYNNKAV 157 (556)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (556)
|++|++.++. ..+. .. ..|.+.++.... ... ...... ..+... ........... ......+
T Consensus 195 ~~~l~~~~~~--~~~~-------~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~ 258 (682)
T 2bpo_A 195 LEVLKDELHL--DEQE-------AK-FTSQFQYTVLNEITDSM-SLGEPSAHYLPSH----QLNRNADGIQL-GPFDLSQ 258 (682)
T ss_dssp HHHHHHHTTC--CCCC-------CC-CCCSBCCEECSSCCTTS-CSSCSSGGGSTTS----CCCCCTTCCBC-SCCBTTB
T ss_pred HHHHHhhcCC--cccc-------cc-cCCcceeEecccCCccc-cccCccccccccc----ccccccccccc-CcccCCC
Confidence 9999998863 2111 01 234455443211 000 000000 000000 00000000000 0111123
Q ss_pred cee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCCCC
Q 008731 158 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPD 236 (556)
Q Consensus 158 ~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~ 236 (556)
+|. +|++|++||+ +++|+|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||+++++.|++.+.......
T Consensus 259 p~~a~v~~~~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~~~~-- 335 (682)
T 2bpo_A 259 PYIAPIVKSRELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLKPLDPTVKV-- 335 (682)
T ss_dssp CCCEEEEEEEECCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEECCBSSTTCCC--
T ss_pred ceEEEEEEEEEccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCCHHHHHHHHHHhhccCCcEEEEecCCcccCC--
Confidence 455 9999999998 788999999999988899999999999999999999999999999999999998754332222
Q ss_pred ccCCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCC-
Q 008731 237 IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP- 315 (556)
Q Consensus 237 ~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~- 315 (556)
++|.|+|++++|++|+||++ +|++.||+.||.||+|+.+|++|++|+ +++++|.+|+..+++|++|+|.+||
T Consensus 336 ----p~p~~~tl~~~l~~~ldi~~-~p~~~~l~~la~~a~~~~~k~~L~~l~--~~~~~~~~~~~~~~~~i~dvL~~fp~ 408 (682)
T 2bpo_A 336 ----PFPTPTTIGAAIKHYLEITG-PVSRQLFSSLIQFAPNADVKEKLTLLS--KDKDQFAVEITSKYFNIADALKYLSD 408 (682)
T ss_dssp ----SSCSSEEHHHHHHHTBCCSS-CCCHHHHHHHSTTCSSHHHHHHHHHHT--TCHHHHHHHTGGGTCCHHHHHHHHHT
T ss_pred ----CCCCCccHHHHHHHhhhccC-CCCHHHHHHHHHHCCCHHHHHHHHHhc--cCHHHHHHHHhcCCCCHHHHHHhccC
Confidence 37799999999999999999 999999999999999999999999999 5999999999999999999999999
Q ss_pred ---CCCCchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCC---CCCccCccchhhhccCCC--C------
Q 008731 316 ---SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY---KRKRTGLCSVWLAGLDPQ--Q------ 381 (556)
Q Consensus 316 ---s~~~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~---~~~~~G~~S~~L~~l~~~--~------ 381 (556)
++++|+++++..+|+++||+|||||+|..+++.++|+|++++|+++. ++.+.|+||+||+++++. +
T Consensus 409 ~~~s~~~p~~~l~~~lp~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~ 488 (682)
T 2bpo_A 409 GAKWDTVPMQFLVESVPQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAET 488 (682)
T ss_dssp TCCCTTSCHHHHHHHSCBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTS
T ss_pred cccccCCCHHHHHHhCcccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhccccccccccccc
Confidence 89999999999999999999999999987789999999999999876 577899999999877650 0
Q ss_pred --C--------------ceEEEEeecCCCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhC------CC-CCCCEEEE
Q 008731 382 --G--------------IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS------SG-PAAPIIFF 437 (556)
Q Consensus 382 --G--------------~~v~v~~~~g~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~------~~-~~~~~~L~ 437 (556)
| ..|.+.++.+.|++| ++.+|+||||+||||||||||+|++...+. .+ ..++++||
T Consensus 489 ~~G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~ 568 (682)
T 2bpo_A 489 NLPVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILF 568 (682)
T ss_dssp CCCCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEE
T ss_pred ccccceeeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEE
Confidence 2 366666666778999 778999999999999999999999987553 12 24899999
Q ss_pred EcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec-CCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHH
Q 008731 438 FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR-KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPS 516 (556)
Q Consensus 438 ~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr-~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~ 516 (556)
||||+++|++|++||++|....|... +++++||| ++..++||||+|.++.+.+++++.++++||||||+..|++
T Consensus 569 fG~R~~~D~ly~dEl~~~~~~~g~~~-----~l~~afSr~d~~~k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa~~M~~ 643 (682)
T 2bpo_A 569 YGSRNTDDFLYQDEWPEYAKKLDGSF-----EMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAK 643 (682)
T ss_dssp EEESSSSSCTTTTTHHHHHHHHGGGE-----EEEEEESCCTTSCCCCHHHHHHHTHHHHHHHHTTTCEEEEEECSTTHHH
T ss_pred EecCChhhhhhHHHHHHHHHhcCCce-----EEEEEECCCCCCCCcchHHHHHhhHHHHHHHHhCCcEEEEeCCchHhHH
Confidence 99999999999999999953224332 89999999 5567999999999999999999977999999999449999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEecc
Q 008731 517 DVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 555 (556)
Q Consensus 517 ~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (556)
+|.++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 644 ~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 682 (682)
T 2bpo_A 644 GVSTALVGILSRGKSITTDEATELIKMLKTSGRYQEDVW 682 (682)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 999999999999999999999999999999999999999
No 3
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=100.00 E-value=1.4e-86 Score=747.24 Aligned_cols=500 Identities=29% Similarity=0.519 Sum_probs=414.8
Q ss_pred CCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHHHHHhhhCCCCCCCCC
Q 008731 17 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGP 96 (556)
Q Consensus 17 ~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~~~l~~~~~~~~~~~~ 96 (556)
.|+|++|||||||||+|++||++++.+|++|+++||+++++++++|+.. +.++.|+.|.+++|+++++.++.......
T Consensus 132 ~L~~~~~aVfGlGds~Y~~F~~~~k~ld~~L~~lGa~rl~~~~~~D~~~--g~e~~f~~W~~~~~~~l~~~~~~~~~~~~ 209 (688)
T 1tll_A 132 PLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELC--GQEEAFRTWAKKVFKAACDVFCVGDDVNI 209 (688)
T ss_dssp TTTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTT--THHHHHHHHHHHHHHHHHHHHTCCSSSCC
T ss_pred cCCCCeEEEEeeccCchHHHHHHHHHHHHHHHHcCCceeecceeeccCC--CcHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 5899999999999999999999999999999999999999999999973 58899999999999999988652111000
Q ss_pred Cc----c-cccchhcCCCceeEEEecccccccccccccchhhhhhhhhhhhccccccccccccCCccee-EeEeeeecCC
Q 008731 97 DH----V-IEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTK 170 (556)
Q Consensus 97 ~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~Lt~ 170 (556)
.. . .+...+ .++.+.+...... ..+.. .... ....++|. +|++|++||+
T Consensus 210 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~------~~~~---------~~~~~~~~a~v~~~~~Lt~ 264 (688)
T 1tll_A 210 EKPNNSLISNDRSW-KRNKFRLTYVAEA---------PDLTQ------GLSN---------VHKKRVSAARLLSRQNLQS 264 (688)
T ss_dssp C-------CCSSSC-CTTTEEEEECSCC---------CCHHH------HHHH---------HTTSCCEEEEEEEEEECSC
T ss_pred cccccccccccccc-CCcceEEeccccc---------ccccc------cccc---------cccCCceEEEEEeeeecCC
Confidence 00 0 000111 1233444321100 00100 0000 01122455 9999999999
Q ss_pred CCCCCcEEEEEEEecCC-CccccCCCeeEEccCCCHHHHHHHHHHcCC--CCCceEEEeecCccc----CCCCc-cCCCc
Q 008731 171 SGSGKDVHHFEFEFVSA-AIEYEVGDVLEILPSQDPAAVDTFIQRCNL--DPDALITVQHKEMKN----YLPDI-HKNTT 242 (556)
Q Consensus 171 ~~~~~~v~~i~l~~~~~-~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l--~~~~~v~i~~~~~~~----~~~~~-~~~~~ 242 (556)
.+++|+|+||+|+++++ +++|+|||+|+|+|.|+++.|+++|++|++ ++++.|++....... ..+.+ ...++
T Consensus 265 ~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~ 344 (688)
T 1tll_A 265 PKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRL 344 (688)
T ss_dssp TTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTCSSCCCSCSCEEEEEEEECCCSSSCCEEEEECCSS
T ss_pred CCCCceEEEEEEecCCCCCCccCCCCEEEEecCCCHHHHHHHHHHhCCCCCCCeEEEEeccccccCCCcccccccccCCC
Confidence 99999999999999754 799999999999999999999999999986 677899886431110 00000 01235
Q ss_pred cccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCCCCCCchh
Q 008731 243 EVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPID 322 (556)
Q Consensus 243 ~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~s~~~p~~ 322 (556)
| ++|++++|++|+||++ +|++.||+.||.||+|+.+|++|++|++ +.++|.+|+...+++++|+|.+||++++|++
T Consensus 345 p-~~tl~~~l~~~lDi~~-~p~~~~l~~la~~a~~~~ek~~L~~l~~--~~~~~~~~~~~~~~~i~evl~~fps~~~p~~ 420 (688)
T 1tll_A 345 P-PCTIFQAFKYYLDITT-PPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKNPTMVEVLEEFPSIQMPAT 420 (688)
T ss_dssp C-SBCHHHHHHHTBCCSS-CCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHCCCHHHHHHHSTTBCCCHH
T ss_pred C-CccHHHHHHhheeCCC-CCCHHHHHHHHHHcCCHHHHHHHHHHhc--CHHHHHHHHhhcCCCHHHHHHhCCCcCCCHH
Confidence 6 8999999999999999 9999999999999999999999999997 7889999999999999999999999999999
Q ss_pred HHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCC--CCccCccchhhhccCCCCCceEEEEee-cCCCCCC-C
Q 008731 323 WLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK--RKRTGLCSVWLAGLDPQQGIYIPAWFQ-KGSLPRP-P 398 (556)
Q Consensus 323 ~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~--~~~~G~~S~~L~~l~~~~G~~v~v~~~-~g~F~lp-~ 398 (556)
+++..+|++++|+|||||+|..+++.++|+|++++|+++.+ +.+.|.||+||+++++ |+.|.+.++ .|.|.+| +
T Consensus 421 ~l~~~lp~l~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~--Gd~v~v~~~p~g~F~lp~~ 498 (688)
T 1tll_A 421 LLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQA--DDVVPCFVRGAPSFHLPRN 498 (688)
T ss_dssp HHHHHSCBCCCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCT--TSEEEEEEECCGGGSCCSC
T ss_pred HHHHhCcccceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCC--CCEEEEEeccCCCcccCcC
Confidence 99999999999999999999766799999999999977543 4668999999999999 999999995 4589999 7
Q ss_pred CCCCeEEEcCCCCchhhHHHHHHHHHhhC--CCCCCCEEEEEcccCCC-ccccHHHHHHhHhcCCCccccCCCcEEEEEe
Q 008731 399 PSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 475 (556)
Q Consensus 399 ~~~piimIa~GTGIAPf~s~lq~~~~~~~--~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 475 (556)
+.+|+||||+|||||||+||++++..... .+..++++||||||+++ |++|++||++|.+. +.+. +++++||
T Consensus 499 ~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~-~~~~-----~l~~a~S 572 (688)
T 1tll_A 499 PQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNK-GVFR-----ELYTAYS 572 (688)
T ss_dssp TTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHHT-TSEE-----EEEEEES
T ss_pred CCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHHc-CCce-----EEEEEEC
Confidence 78999999999999999999999987521 11238899999999998 99999999999887 5443 8999999
Q ss_pred cCCCC-ccchhhhHHHc-HHHHHHhH-cCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEE
Q 008731 476 RKQPQ-KVYVQHKMLEQ-SQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHV 552 (556)
Q Consensus 476 r~~~~-k~yVqd~l~~~-~~~l~~~l-~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~ 552 (556)
|++.. ++|||++|.++ ...+++++ ..+++||||||+ .|+++|.++|.+++.++++++.++|++|+++|++++||+.
T Consensus 573 r~~~~~k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp~-~M~~~V~~~L~~i~~~~gg~~~~~a~~~l~~l~~~~ry~~ 651 (688)
T 1tll_A 573 REPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDV-TMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHE 651 (688)
T ss_dssp SCTTSCCCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEEH-HHHHHHHHHHHHHHHTTTCCCTTHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCccchhhhhHHhHHHHHHHhhccCCcEEEEeCCH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCCEEE
Confidence 98764 89999999988 78888877 458999999998 8999999999999999999999999999999999999999
Q ss_pred eccC
Q 008731 553 EAWS 556 (556)
Q Consensus 553 dvws 556 (556)
|+|+
T Consensus 652 Evf~ 655 (688)
T 1tll_A 652 DIFG 655 (688)
T ss_dssp EEEE
T ss_pred EecC
Confidence 9994
No 4
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=100.00 E-value=2.9e-82 Score=678.31 Aligned_cols=387 Identities=34% Similarity=0.634 Sum_probs=353.1
Q ss_pred Cccee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCC
Q 008731 156 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYL 234 (556)
Q Consensus 156 ~~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~ 234 (556)
.++|. +|++|++||+ +++|+|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||+++++.|++.........
T Consensus 60 ~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~~~~ 138 (458)
T 3qfs_A 60 KNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNK 138 (458)
T ss_dssp SSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTTCSC
T ss_pred CCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCCEEEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCccccc
Confidence 34566 9999999998 468999999999998899999999999999999999999999999999999999764322111
Q ss_pred CCccCCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcC--ccCHHHHHHHHHcCCCCHHHHhh
Q 008731 235 PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFAS--PEGRDDLYKYNQKERRTVLEVLE 312 (556)
Q Consensus 235 ~~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s--~~~~~~~~~~~~~~~~~~~d~l~ 312 (556)
..+++.|+|++++|++|+||++ +|+++||+.||.||+|+.+|++|++|++ ++|+++|.+|+.+++++++|+|.
T Consensus 139 ----~~p~~~~~tl~~~l~~~~di~~-~p~~~~l~~la~~a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~ 213 (458)
T 3qfs_A 139 ----KHPFPCPTSYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQ 213 (458)
T ss_dssp ----CCSSSSSEEHHHHHHHTBCCSS-CCCHHHHHHHGGGBCSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHH
T ss_pred ----CCCCCCCeeHHHHHHhcEeccC-CCCHHHHHHHHHHcCCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHHH
Confidence 1237789999999999999999 9999999999999999999999999997 46889999999999999999999
Q ss_pred hCCCCCCchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCc------eEE
Q 008731 313 DFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGI------YIP 386 (556)
Q Consensus 313 ~f~s~~~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~------~v~ 386 (556)
+||++++|+++|++++|+++||+|||||+|..+++.++|+|++|+|++..++.+.|+||+||+++.+ |+ .|.
T Consensus 214 ~fps~~~p~~~ll~~lp~l~pR~YSIsSsp~~~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~--gg~~~~~~~v~ 291 (458)
T 3qfs_A 214 DCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEP--VGENGGRALVP 291 (458)
T ss_dssp HSTTBCCCHHHHHHHSCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCS--SCSSCCCCEEE
T ss_pred hCCccCCCHHHHHhhCCCCcceeEeeccCcccCCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhcc--CCccCCceEEE
Confidence 9999999999999999999999999999998778999999999999998888899999999998876 54 699
Q ss_pred EEeecCCCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCC-CCCCEEEEEcccCC-CccccHHHHHHhHhcCCCcc
Q 008731 387 AWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFS 463 (556)
Q Consensus 387 v~~~~g~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~ 463 (556)
+.+|.|.|.+| ++.+|+||||+|||||||+||+|++......+ ..++++||||||+. +|++|++||++|.+. |.++
T Consensus 292 v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~-g~l~ 370 (458)
T 3qfs_A 292 MFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRD-GALT 370 (458)
T ss_dssp EEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHH-TSSS
T ss_pred EEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHc-CCCC
Confidence 99999999999 77899999999999999999999986432111 23789999999997 499999999999988 7665
Q ss_pred ccCCCcEEEEEecCCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008731 464 EAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKA 543 (556)
Q Consensus 464 ~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 543 (556)
++++||||++..|+||||+|.++.+.+|+++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++
T Consensus 371 -----~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~A~~~~~~ 445 (458)
T 3qfs_A 371 -----QLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKK 445 (458)
T ss_dssp -----EEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred -----EEEEEEECCCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 899999999988999999999999999999988999999999768999999999999999999999999999999
Q ss_pred HHHCCCEEEeccC
Q 008731 544 LQRAGRYHVEAWS 556 (556)
Q Consensus 544 l~~~~Ry~~dvws 556 (556)
|+++|||++||||
T Consensus 446 l~~~~RY~~Dvws 458 (458)
T 3qfs_A 446 LMTKGRYSLDVWS 458 (458)
T ss_dssp HHHTTSEEEEEEC
T ss_pred HHHCCCeEEEecC
Confidence 9999999999998
No 5
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=100.00 E-value=1.3e-78 Score=663.50 Aligned_cols=388 Identities=29% Similarity=0.531 Sum_probs=345.0
Q ss_pred Cccee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCC--CceEEEeecCcc-
Q 008731 156 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDP--DALITVQHKEMK- 231 (556)
Q Consensus 156 ~~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~--~~~v~i~~~~~~- 231 (556)
.++|. +|++|++||+.+++|+|+||+|++++++++|+|||||+|+|.|+++.|+++|++||+++ +..|++.+....
T Consensus 112 ~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~~~~~~~~ 191 (539)
T 2qtl_A 112 DPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLLKIKADTK 191 (539)
T ss_dssp -CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEEEEECTTCC
T ss_pred CCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEEEecccccc
Confidence 33565 99999999999999999999999998889999999999999999999999999999986 467887653221
Q ss_pred ---cCCCCccCCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHH
Q 008731 232 ---NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVL 308 (556)
Q Consensus 232 ---~~~~~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~ 308 (556)
..+| .+++.++|++++|++|+||++ +|++.||+.||.||+|+.+|++|++|++++|.++|++|+.+++++++
T Consensus 192 ~~~~~~p----~~~p~~~tl~~~L~~~lDi~~-~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~~ll 266 (539)
T 2qtl_A 192 KKGATLP----QHIPAGCSLQFIFTWCLEIRA-IPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDACACLL 266 (539)
T ss_dssp CTTCCCC----TTSCTTCBHHHHHHHTBCTTS-CCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTTCCHH
T ss_pred CCCccCC----CCCCCcccHHHHHHHHhhhcC-CCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcCCCHH
Confidence 1222 346789999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCCchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCC--CCCCccCccchhhhcc---------
Q 008731 309 EVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP--YKRKRTGLCSVWLAGL--------- 377 (556)
Q Consensus 309 d~l~~f~s~~~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~--~~~~~~G~~S~~L~~l--------- 377 (556)
|+|.+||++++|+++|++++|++++|+|||||+|..+++.++|+|++++|++. .++.+.|+||+||+++
T Consensus 267 dvL~~fps~~~p~~~ll~~lp~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~ 346 (539)
T 2qtl_A 267 DLLLAFPSCQPPLSLLLEHLPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNI 346 (539)
T ss_dssp HHHHHSTTBCCCHHHHHHHSCBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC----
T ss_pred HHHHhCCCcCCCHHHHHHhCcCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccc
Confidence 99999999999999999999999999999999997667999999999999643 3455789999999987
Q ss_pred --CCCCCc-------eEEEEeecC-CCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCC---CCCCCEEEEEcccCC
Q 008731 378 --DPQQGI-------YIPAWFQKG-SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS---GPAAPIIFFFGCRNE 443 (556)
Q Consensus 378 --~~~~G~-------~v~v~~~~g-~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~---~~~~~~~L~~G~R~~ 443 (556)
++ |+ .|.+.+|.| .|++| ++.+|+||||+||||||||||+|+|...... ...++++||||||++
T Consensus 347 ~~~~--Gd~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~ 424 (539)
T 2qtl_A 347 HASH--EDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHK 424 (539)
T ss_dssp ------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCT
T ss_pred cCCC--CCccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCc
Confidence 88 99 999999975 89999 7789999999999999999999998654311 124889999999999
Q ss_pred C-ccccHHHHHHhHhcCCCccccCCCcEEEEEecCCC------CccchhhhHHHcHHHHHHhH-cCCCEEEEeCCCCccH
Q 008731 444 D-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMP 515 (556)
Q Consensus 444 ~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~m~ 515 (556)
+ |++|++||++|.+. |.+. +++++|||++. .++||||+|.++.+++|+++ .++++|||||+++.|+
T Consensus 425 ~~D~ly~dEL~~~~~~-g~~~-----~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~ 498 (539)
T 2qtl_A 425 DRDYLFRKELRHFLKH-GILT-----HLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMA 498 (539)
T ss_dssp TTCCTTHHHHHHHHHT-TSSC-----EEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHH
T ss_pred chhhHHHHHHHHHHHh-CCCc-----EEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHH
Confidence 5 99999999999987 5444 89999999876 69999999999999999998 4589999999966899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeccC
Q 008731 516 SDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 556 (556)
Q Consensus 516 ~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvws 556 (556)
++|.++|.+|++++++++.++|++|+++|+++|||++||||
T Consensus 499 ~~V~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw~ 539 (539)
T 2qtl_A 499 KDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIWS 539 (539)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcCC
Confidence 99999999999999999999999999999999999999997
No 6
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=100.00 E-value=6.7e-79 Score=643.53 Aligned_cols=375 Identities=29% Similarity=0.512 Sum_probs=338.4
Q ss_pred EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcc-cCCCCccC
Q 008731 161 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK-NYLPDIHK 239 (556)
Q Consensus 161 ~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~-~~~~~~~~ 239 (556)
+|++|++||+++++|+|+||+|+++ ++++|+|||+|+|+|.|+++.|+++|++||+++++.|++...... ..+|
T Consensus 10 ~v~~n~~Lt~~~~~~~~~hie~~l~-~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~~p---- 84 (393)
T 4dql_A 10 NVVASKELQQPGSARSTRHLEIELP-KEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLP---- 84 (393)
T ss_dssp EEEEEEECSCTTCSCCEEEEEEECC-TTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC-------------
T ss_pred EEEeEEEcCCCCCCceEEEEEEECC-CCCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCCccccCC----
Confidence 9999999999999999999999998 699999999999999999999999999999999998887543211 1233
Q ss_pred CCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCCCCCC
Q 008731 240 NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQM 319 (556)
Q Consensus 240 ~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~s~~~ 319 (556)
++.|+|++++|++ +||++ +|+++||+.||.||+|+.+|++|++|++. ++|.+++..+++|++|+|.+||++++
T Consensus 85 --~~~~~tl~~~l~~-~di~~-~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~fps~~~ 157 (393)
T 4dql_A 85 --LAKTVSVEELLQY-VELQD-PVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKYPACEM 157 (393)
T ss_dssp ----CCEEHHHHTTS-BCSSS-BCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHCTTCCC
T ss_pred --CCCcEEHHHHHHh-ccccC-CCCHHHHHHHHHhCCCHHHHHHHHHHhCc---hHHHHHHhccCCCHHHHHHhCCCCCC
Confidence 6689999999999 99999 99999999999999999999999999974 37999999999999999999999999
Q ss_pred chhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCC-CccCccchhhhccCCCCCceEEE--EeecCCCCC
Q 008731 320 PIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKR-KRTGLCSVWLAGLDPQQGIYIPA--WFQKGSLPR 396 (556)
Q Consensus 320 p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~-~~~G~~S~~L~~l~~~~G~~v~v--~~~~g~F~l 396 (556)
|+++|++++|+++||+|||||+|..+++.++|+|+++.+++..++ .+.|+||+||+++++ |+.|.+ .+|.|.|.+
T Consensus 158 p~~~~l~~lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~--Gd~v~v~v~~P~g~F~l 235 (393)
T 4dql_A 158 KFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQE--GDTITCFISTPQSEFTL 235 (393)
T ss_dssp CHHHHHHTSCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCT--TCEEEEEEECCSSCCCC
T ss_pred CHHHHHHhCCCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCC--cCEEEEEEEcCCCCccc
Confidence 999999999999999999999998778999999999999876554 356999999999999 999995 457899999
Q ss_pred C-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCC-CCCCEEEEEcccCC-CccccHHHHHHhHhcCCCccccCCCcEEEE
Q 008731 397 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVA 473 (556)
Q Consensus 397 p-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 473 (556)
| ++.+|+||||+|||||||+||+|++......+ ..++++||||||++ +|++|++||+++.+. |++ +++++
T Consensus 236 p~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~l------~l~~a 308 (393)
T 4dql_A 236 PKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSE-GII------TLHTA 308 (393)
T ss_dssp CSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHT-TSC------EEEEE
T ss_pred CccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhC-CCe------EEEEE
Confidence 9 77899999999999999999999986543322 34789999999996 599999999999987 999 89999
Q ss_pred Eec-CCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEE
Q 008731 474 FSR-KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHV 552 (556)
Q Consensus 474 ~Sr-~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~ 552 (556)
||| ++..++||||++.++.+.+++++.++++||||||+..|+++|+++|.+|++++++++.++|++|+++|+++|||++
T Consensus 309 ~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~ 388 (393)
T 4dql_A 309 FSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAK 388 (393)
T ss_dssp ESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCEEE
T ss_pred EeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEE
Confidence 999 5567999999999999999999988999999999769999999999999999999999999999999999999999
Q ss_pred eccC
Q 008731 553 EAWS 556 (556)
Q Consensus 553 dvws 556 (556)
||||
T Consensus 389 dv~s 392 (393)
T 4dql_A 389 DVWA 392 (393)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 9997
No 7
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=100.00 E-value=7e-75 Score=621.30 Aligned_cols=386 Identities=30% Similarity=0.563 Sum_probs=341.9
Q ss_pred cee-EeEeeeecCCCCCCCcEEEEEEEecCC-CccccCCCeeEEccCCCHHHHHHHHHHcCC--CCCceEEEeecCcc--
Q 008731 158 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSA-AIEYEVGDVLEILPSQDPAAVDTFIQRCNL--DPDALITVQHKEMK-- 231 (556)
Q Consensus 158 ~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~-~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l--~~~~~v~i~~~~~~-- 231 (556)
+|. +|++|++||+.+++|+|+||+|+++++ +++|+|||+|+|+|.|+++.|+++|++|++ ++++.|++......
T Consensus 30 ~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~~~~~~~ 109 (435)
T 1f20_A 30 VSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNT 109 (435)
T ss_dssp CEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEEEEEESS
T ss_pred cEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEeccccccC
Confidence 465 999999999999999999999999754 799999999999999999999999999976 67899988642110
Q ss_pred --cCCCCc-cCCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHH
Q 008731 232 --NYLPDI-HKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVL 308 (556)
Q Consensus 232 --~~~~~~-~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~ 308 (556)
...+.+ ...++| ++|++++|++|+||++ +|++.||+.||.||+|+.+|++|++|++ +.++|.+|+....++++
T Consensus 110 ~~~~~~~~~~~~~~p-~~tl~~~l~~~~di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~i~ 185 (435)
T 1f20_A 110 ALGVISNWKDESRLP-PCTIFQAFKYYLDITT-PPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKNPTMV 185 (435)
T ss_dssp STTCEEEEEECCSSC-SBCHHHHHHHTBCCSS-CCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHCCCHH
T ss_pred CCCccccccccCCCC-CccHHHHHHhceecCC-CCCHHHHHHHHHHCCCHHHHHHHHHhhc--CHHHHHHHHhccCCCHH
Confidence 000000 012366 8999999999999999 9999999999999999999999999997 77899999999999999
Q ss_pred HHhhhCCCCCCchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCC--CCccCccchhhhccCCCCCceEE
Q 008731 309 EVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK--RKRTGLCSVWLAGLDPQQGIYIP 386 (556)
Q Consensus 309 d~l~~f~s~~~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~--~~~~G~~S~~L~~l~~~~G~~v~ 386 (556)
|+|.+||++++|+++++..+|++++|+|||||+|..+++.++|+|++++|.++.+ +.+.|.||+||+++++ |+.|.
T Consensus 186 ~vl~~fps~~~p~~~l~~~lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~--Gd~v~ 263 (435)
T 1f20_A 186 EVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQA--DDVVP 263 (435)
T ss_dssp HHHHHSTTBCBCHHHHHHHSCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCT--TCEEE
T ss_pred HHHHhCCcCCCCHHHHHHhCCCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCC--CCEEE
Confidence 9999999999999999999999999999999999876799999999999987543 4568999999999999 99999
Q ss_pred EEee-cCCCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhC--CCCCCCEEEEEcccCCC-ccccHHHHHHhHhcCCC
Q 008731 387 AWFQ-KGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGV 461 (556)
Q Consensus 387 v~~~-~g~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~--~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~ 461 (556)
+.++ .|.|.+| ++.+|+||||+|||||||+||++++..... .+..++++||||||+++ |++|++||+++.+. +.
T Consensus 264 v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~-~~ 342 (435)
T 1f20_A 264 CFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNK-GV 342 (435)
T ss_dssp EEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHT-TS
T ss_pred EEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHHHc-CC
Confidence 9995 5689999 778999999999999999999999987421 01238899999999998 99999999999887 55
Q ss_pred ccccCCCcEEEEEecCCCC-ccchhhhHHHc-HHHHHHhHc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHH
Q 008731 462 FSEAKGGGFYVAFSRKQPQ-KVYVQHKMLEQ-SQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 538 (556)
Q Consensus 462 l~~~~~~~~~~a~Sr~~~~-k~yVqd~l~~~-~~~l~~~l~-~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~ 538 (556)
+. +++++|||++.. ++|||+++.++ .+.+++++. .+++||||||+ .|+++|.++|.+++.++++++.++|+
T Consensus 343 ~~-----~l~~a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp~-~M~~~V~~~L~~i~~~~~~~~~~~a~ 416 (435)
T 1f20_A 343 FR-----ELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDV-TMAADVLKAIQRIMTQQGKLSEEDAG 416 (435)
T ss_dssp EE-----EEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEECH-HHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cc-----EEEEEECCCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCCh-hHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 44 899999998764 89999999987 788888774 58999999998 89999999999999999999999999
Q ss_pred HHHHHHHHCCCEEEeccC
Q 008731 539 NWLKALQRAGRYHVEAWS 556 (556)
Q Consensus 539 ~~~~~l~~~~Ry~~dvws 556 (556)
+|+++|+++|||++|||+
T Consensus 417 ~~~~~l~~~~RY~~Dv~~ 434 (435)
T 1f20_A 417 VFISRLRDDNRYHEDIFG 434 (435)
T ss_dssp HHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHCCCEEEEecC
Confidence 999999999999999996
No 8
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=100.00 E-value=5.4e-73 Score=595.40 Aligned_cols=360 Identities=30% Similarity=0.521 Sum_probs=330.5
Q ss_pred ccee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCCC
Q 008731 157 VCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLP 235 (556)
Q Consensus 157 ~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~ 235 (556)
++|. +|++|++||+++++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.|++..
T Consensus 10 ~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~~-------- 81 (374)
T 1ddg_A 10 APLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEG-------- 81 (374)
T ss_dssp BCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEETT--------
T ss_pred CCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEECC--------
Confidence 3466 9999999999999999999999998789999999999999999999999999999999999998731
Q ss_pred CccCCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCC
Q 008731 236 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 315 (556)
Q Consensus 236 ~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~ 315 (556)
.++|++++|++|+||+. |++.||+.||.||+|+. |++|++ +++.|.+|+. +++++|+|.+||
T Consensus 82 --------~~~tl~~~l~~~~di~~--p~~~~l~~la~~~~~~~----L~~l~~--~~~~~~~~~~--~~~~~~vl~~~p 143 (374)
T 1ddg_A 82 --------KTLPLNEALQWHFELTV--NTANIVENYATLTRSET----LLPLVG--DKAKLQHYAA--TTPIVDMVRFSP 143 (374)
T ss_dssp --------EEEEHHHHHHHHBCCSC--CCHHHHHHHHHHHTCTT----TGGGTT--CTHHHHHHHH--HSCHHHHHHHSC
T ss_pred --------CCccHHHHHHhcccCCC--CCHHHHHHHHHHCCCHH----HHHHhc--ChHHHHHHHc--CCCHHHHHHHCC
Confidence 68999999999999984 79999999999999974 888884 7788999986 589999999999
Q ss_pred CCCCchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCceEEEEeec-CC
Q 008731 316 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK-GS 393 (556)
Q Consensus 316 s~~~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~-g~ 393 (556)
+ +++.++++.+++++++|+|||||+|..+++.++|+|++++|+++ ++.+.|+||+||++ +++ |++|.+.++. |.
T Consensus 144 ~-~~~~Gq~v~l~~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~g~ 219 (374)
T 1ddg_A 144 A-QLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEE--EGEVRVFIEHNDN 219 (374)
T ss_dssp C-CCCHHHHHHHSCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCS--SCEEEEEEECCTT
T ss_pred C-CCCHHHHHhhccCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCC--CCEEEEEEeeCCC
Confidence 8 88999999999999999999999997667999999999999886 66678999999997 999 9999999954 58
Q ss_pred CCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCC-CccccHHHHHHhHhcCCCccccCCCcEE
Q 008731 394 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFY 471 (556)
Q Consensus 394 F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~ 471 (556)
|.+| ++.+|+||||+|||||||+||++++...+.. ++++||||||++ +|++|++||+++.+. +.++ +++
T Consensus 220 F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~~~---~~~~L~~G~R~~~~d~ly~~El~~~~~~-~~~~-----~l~ 290 (374)
T 1ddg_A 220 FRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP---GKNWLFFGNPHFTEDFLYQVEWQRYVKE-GVLT-----RID 290 (374)
T ss_dssp SCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTCC---SCEEEEEEESCHHHHCTTHHHHHHHHHT-TSCC-----EEE
T ss_pred ccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcCCC---CCEEEEEEeCCchhhhhHHHHHHHHHHh-CCCc-----EEE
Confidence 9999 7889999999999999999999999887654 789999999998 499999999999887 5444 899
Q ss_pred EEEecCCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEE
Q 008731 472 VAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 551 (556)
Q Consensus 472 ~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~ 551 (556)
++|||++..++|||++|.++.+.+++++.++++|||||++..|+++|.++|.+++.++++++.++|++|+++|+++|||+
T Consensus 291 ~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~ 370 (374)
T 1ddg_A 291 LAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQ 370 (374)
T ss_dssp EEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCEE
T ss_pred EEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeE
Confidence 99999988899999999999899999988899999999444999999999999999999999999999999999999999
Q ss_pred Eecc
Q 008731 552 VEAW 555 (556)
Q Consensus 552 ~dvw 555 (556)
+|||
T Consensus 371 ~dv~ 374 (374)
T 1ddg_A 371 RDVY 374 (374)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9999
No 9
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=3.4e-37 Score=315.13 Aligned_cols=265 Identities=26% Similarity=0.479 Sum_probs=219.4
Q ss_pred cee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCCCC
Q 008731 158 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPD 236 (556)
Q Consensus 158 ~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~ 236 (556)
.+. +|+++++|++.++.+++++++|++++..+.|+||+++.|.++|..
T Consensus 21 ~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~------------------------------- 69 (304)
T 2bmw_A 21 PFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVD------------------------------- 69 (304)
T ss_dssp CEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBC-------------------------------
T ss_pred CEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCc-------------------------------
Confidence 344 999999999988899999999999855689999999999887631
Q ss_pred ccCCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCCC
Q 008731 237 IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPS 316 (556)
Q Consensus 237 ~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~s 316 (556)
. .+ .
T Consensus 70 -------~--------------~g-~------------------------------------------------------ 73 (304)
T 2bmw_A 70 -------K--------------NG-K------------------------------------------------------ 73 (304)
T ss_dssp -------T--------------TS-C------------------------------------------------------
T ss_pred -------c--------------cC-C------------------------------------------------------
Confidence 0 00 0
Q ss_pred CCCchhHHHhhcCCCCccccccCCCCCC---CCCEEEEEEEEEEeeCCC-CCCccCccchhhhccCCCCCceEEEEeecC
Q 008731 317 VQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPY-KRKRTGLCSVWLAGLDPQQGIYIPAWFQKG 392 (556)
Q Consensus 317 ~~~p~~~l~~~lp~~~pR~YSIaSsp~~---~~~~i~l~v~~v~~~~~~-~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g 392 (556)
+..+|+|||+|+|.. .++.++|+|+++.|.++. +..+.|.+|+||+++++ |+.|.+.+|.|
T Consensus 74 -------------~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G 138 (304)
T 2bmw_A 74 -------------PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEP--GSEVKITGPVG 138 (304)
T ss_dssp -------------BCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCT--TCEEEEEEEEC
T ss_pred -------------CCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCC--CCEEEEEeccC
Confidence 136899999999852 358999999988776543 33457999999999999 99999999999
Q ss_pred CC-CCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhC----CC--CCCCEEEEEcccCCCccccHHHHHHhHhcCC-Ccc
Q 008731 393 SL-PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS----SG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFS 463 (556)
Q Consensus 393 ~F-~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~----~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~ 463 (556)
.| .+| +...|+||||+|||||||++|++++..... .. ..++++||||||+.+|++|.+||+++.+.++ ++
T Consensus 139 ~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~- 217 (304)
T 2bmw_A 139 KEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNF- 217 (304)
T ss_dssp SSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTE-
T ss_pred CceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcE-
Confidence 75 466 567899999999999999999998865431 00 1268999999999889999999999987644 67
Q ss_pred ccCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHhHcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHH
Q 008731 464 EAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 538 (556)
Q Consensus 464 ~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~ 538 (556)
++++++||+++ .+.|||+.+.+..+.+++++.. ++.||+|||+ +|+++|+++|.+++.+.+ .. ++
T Consensus 218 -----~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~~~~~~g-~~---~~ 287 (304)
T 2bmw_A 218 -----RLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPP-PMEEGIDAALSAAAAKEG-VT---WS 287 (304)
T ss_dssp -----EEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECT-THHHHHHHHHHHHHHTTT-CC---HH
T ss_pred -----EEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHHhhcCCcEEEEECCH-HHHHHHHHHHHHHHHHcC-cc---HH
Confidence 89999999753 4789999999888888877754 7899999998 999999999999988754 43 67
Q ss_pred HHHHHHHHCCCEEEecc
Q 008731 539 NWLKALQRAGRYHVEAW 555 (556)
Q Consensus 539 ~~~~~l~~~~Ry~~dvw 555 (556)
+++++|+++|||++|+|
T Consensus 288 ~~~~~m~~~~ry~~e~~ 304 (304)
T 2bmw_A 288 DYQKDLKKAGRWHVETY 304 (304)
T ss_dssp HHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHcCCeEEecC
Confidence 89999999999999999
No 10
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=1.9e-37 Score=318.55 Aligned_cols=263 Identities=25% Similarity=0.465 Sum_probs=220.3
Q ss_pred ee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCCCCc
Q 008731 159 FL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDI 237 (556)
Q Consensus 159 ~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~~ 237 (556)
+. +|++++++|+.++.+++++|+|+.++ ...|+||+++.|.++|..
T Consensus 38 ~~~~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~-------------------------------- 84 (314)
T 1fnb_A 38 YVGRCLLNTKITGDDAPGETWHMVFSHEG-EIPYREGQSVGVIPDGED-------------------------------- 84 (314)
T ss_dssp EEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBC--------------------------------
T ss_pred EEEEEEEEEEecCCCCCCcEEEEEEecCC-CCCcCCCCEEEEecCCCC--------------------------------
Confidence 44 99999999988888899999999884 489999999999877521
Q ss_pred cCCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCCCC
Q 008731 238 HKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSV 317 (556)
Q Consensus 238 ~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~s~ 317 (556)
.. |
T Consensus 85 --------------------~~--------------------------------g------------------------- 87 (314)
T 1fnb_A 85 --------------------KN--------------------------------G------------------------- 87 (314)
T ss_dssp --------------------TT--------------------------------S-------------------------
T ss_pred --------------------cC--------------------------------C-------------------------
Confidence 00 0
Q ss_pred CCchhHHHhhcCCCCccccccCCCCCC---CCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCC
Q 008731 318 QMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 394 (556)
Q Consensus 318 ~~p~~~l~~~lp~~~pR~YSIaSsp~~---~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F 394 (556)
.+..+|+|||+|+|.. .++.++|+|..+.|.+..++.+.|.+|+||+++++ |+.|.+.+|.|.|
T Consensus 88 -----------~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~~ 154 (314)
T 1fnb_A 88 -----------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKP--GAEVKLTGPVGKE 154 (314)
T ss_dssp -----------SBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCT--TCEEEEEEEECST
T ss_pred -----------CcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCC--CCEEEEEeccCCc
Confidence 0247899999999863 25899999998888776555678999999999999 9999999999986
Q ss_pred C-CC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCC--CCCCEEEEEcccCCCccccHHHHHHhHhcCC-CccccCCCc
Q 008731 395 P-RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGG 469 (556)
Q Consensus 395 ~-lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~ 469 (556)
. +| +...|+||||+|||||||++|++++......+ ..++++||||||+.+|++|++||+++.+.++ ++ +
T Consensus 155 ~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~------~ 228 (314)
T 1fnb_A 155 MLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNF------R 228 (314)
T ss_dssp TCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTE------E
T ss_pred eeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcE------E
Confidence 4 56 56789999999999999999999987643211 1267999999999999999999999987644 67 8
Q ss_pred EEEEEecCCC----CccchhhhHHHcHHHHHHhHc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008731 470 FYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKAL 544 (556)
Q Consensus 470 ~~~a~Sr~~~----~k~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l 544 (556)
+++++||+++ .++||++.|.+....+++.+. .++.||+|||+ +|+++|+++|.+++.+.+. +|++++++|
T Consensus 229 ~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~~~~~g~----~~~~~~~~l 303 (314)
T 1fnb_A 229 LDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLK-GMEKGIDDIMVSLAAAEGI----DWIEYKRQL 303 (314)
T ss_dssp EEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEECT-THHHHHHHHHHHHHHTTTC----CHHHHHHHH
T ss_pred EEEEECCCCcccCCCceechHHHHHhHHHHHHHHhcCCeEEEEECCH-HHHHHHHHHHHHHHHHhCc----hHHHHHHHH
Confidence 9999999753 478999999987777777664 58899999998 9999999999999887652 478899999
Q ss_pred HHCCCEEEecc
Q 008731 545 QRAGRYHVEAW 555 (556)
Q Consensus 545 ~~~~Ry~~dvw 555 (556)
+++|||++|+|
T Consensus 304 ~~~~r~~~d~~ 314 (314)
T 1fnb_A 304 KKAEQWNVEVY 314 (314)
T ss_dssp HHTTCEEEEEC
T ss_pred HHCCcEEEecC
Confidence 99999999999
No 11
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=9.2e-36 Score=315.97 Aligned_cols=265 Identities=25% Similarity=0.427 Sum_probs=220.9
Q ss_pred cee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCcccCCCC
Q 008731 158 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPD 236 (556)
Q Consensus 158 ~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~~~~~ 236 (556)
.+. +|+++++++++++.+++++|+|+.++....|+||+++.|.+++..
T Consensus 122 ~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~------------------------------- 170 (402)
T 2b5o_A 122 PFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED------------------------------- 170 (402)
T ss_dssp CEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE-------------------------------
T ss_pred CEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC-------------------------------
Confidence 355 999999999888888999999998844589999999999876421
Q ss_pred ccCCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhhhCCC
Q 008731 237 IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPS 316 (556)
Q Consensus 237 ~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~s 316 (556)
..+
T Consensus 171 ---------------------~~g-------------------------------------------------------- 173 (402)
T 2b5o_A 171 ---------------------KNG-------------------------------------------------------- 173 (402)
T ss_dssp ---------------------TTT--------------------------------------------------------
T ss_pred ---------------------cCC--------------------------------------------------------
Confidence 000
Q ss_pred CCCchhHHHhhcCCCCccccccCCCCCC---CCCEEEEEEEEEEeeCCC-CCCccCccchhhhccCCCCC-ceEEEEeec
Q 008731 317 VQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPY-KRKRTGLCSVWLAGLDPQQG-IYIPAWFQK 391 (556)
Q Consensus 317 ~~~p~~~l~~~lp~~~pR~YSIaSsp~~---~~~~i~l~v~~v~~~~~~-~~~~~G~~S~~L~~l~~~~G-~~v~v~~~~ 391 (556)
.+..+|+|||+|+|.. .++.++|+|+++.|.++. ++.+.|.||+||+++++ | +.|.+.+|.
T Consensus 174 ------------~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~--G~d~v~v~gP~ 239 (402)
T 2b5o_A 174 ------------KPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPV--GTDDVKITGPV 239 (402)
T ss_dssp ------------EECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCT--TCCCEEEEEEE
T ss_pred ------------CccCceeeeccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCC--CCceEEEEccc
Confidence 0136899999999863 258999999988776532 33458999999999999 9 999999999
Q ss_pred CCC-CCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCC--CCCCEEEEEcccCCCccccHHHHHHhHhcCC-CccccC
Q 008731 392 GSL-PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAK 466 (556)
Q Consensus 392 g~F-~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~ 466 (556)
|.| .+| +...|+||||+|||||||++|++++......+ ..++++||||||+.+|++|++||+++.+.++ ++
T Consensus 240 G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~---- 315 (402)
T 2b5o_A 240 GKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNF---- 315 (402)
T ss_dssp CSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTE----
T ss_pred CCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcE----
Confidence 986 566 56789999999999999999999987643211 1368999999999999999999999988644 68
Q ss_pred CCcEEEEEecCCC----CccchhhhHHHcHHHHHHhHc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008731 467 GGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL 541 (556)
Q Consensus 467 ~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~ 541 (556)
++++++||+++ .+.|||+.|.+..+.+++++. .+++||+|||+ +|+++|+++|.+++...+. .+++++
T Consensus 316 --~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGP~-~M~~~v~~~L~~~g~~~g~----~~~~~~ 388 (402)
T 2b5o_A 316 --RLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGLK-GMQPPIDETFTAEAEKRGL----NWEEMR 388 (402)
T ss_dssp --EEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECG-GGHHHHHHHHHHHHHHTTC----CHHHHH
T ss_pred --EEEEEECCCCcccCCCccchHHHHHHhHHHHHHHhccCCcEEEEECCH-HHHHHHHHHHHHHHHHcCc----hHHHHH
Confidence 89999999753 478999999988888888775 48899999998 9999999999999988764 467899
Q ss_pred HHHHHCCCEEEecc
Q 008731 542 KALQRAGRYHVEAW 555 (556)
Q Consensus 542 ~~l~~~~Ry~~dvw 555 (556)
++|+++|||++|+|
T Consensus 389 ~~m~~~~Ry~~e~~ 402 (402)
T 2b5o_A 389 RSMKKEHRWHVEVY 402 (402)
T ss_dssp HHHHHTTCEEEEEC
T ss_pred HHHHHCCCEEEecC
Confidence 99999999999999
No 12
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=1.6e-36 Score=311.18 Aligned_cols=212 Identities=27% Similarity=0.461 Sum_probs=184.4
Q ss_pred CCccccccCCCCCC---CCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCC-CC-CCCCCeEE
Q 008731 331 LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP-RP-PPSVPLIL 405 (556)
Q Consensus 331 ~~pR~YSIaSsp~~---~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~-lp-~~~~piim 405 (556)
+..|+|||+|+|.. .++.++|+|+++.|.++.++.+.|.||+||+++++ |+.|.+.+|.|.|. +| +...|+||
T Consensus 86 ~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~~~~~~~~~~~~~vl 163 (310)
T 3vo2_A 86 HKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKP--GADVKITGPVGKEMLMPKDPNATVIM 163 (310)
T ss_dssp CCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCT--TCEEEEEEEECSTTCCBSCTTCEEEE
T ss_pred CcceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCC--CCEEEEEeccCCcccCCCCCCCCEEE
Confidence 36899999999963 36899999999888877666778999999999999 99999999999855 56 57789999
Q ss_pred EcCCCCchhhHHHHHHHHHhhCCC--CCCCEEEEEcccCCCccccHHHHHHhHhcCC-CccccCCCcEEEEEecCCC---
Q 008731 406 IGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFYVAFSRKQP--- 479 (556)
Q Consensus 406 Ia~GTGIAPf~s~lq~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~~~a~Sr~~~--- 479 (556)
||+|||||||++|++++....... ..++++||||||+.+|++|.+||+++.+.++ ++ ++++++||++.
T Consensus 164 IagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~------~v~~~~sr~~~~~~ 237 (310)
T 3vo2_A 164 LATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNF------RLDFAVSREQTNAA 237 (310)
T ss_dssp EEEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTE------EEEEEETTTCBCTT
T ss_pred EeCCcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCE------EEEEEECCCCCCCC
Confidence 999999999999999987643211 1367999999999999999999999988743 78 89999999864
Q ss_pred -CccchhhhHHHcHHHHHHhHc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEecc
Q 008731 480 -QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 555 (556)
Q Consensus 480 -~k~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (556)
.++|||+.+.+..+.+++.+. +++.||+|||+ .|+++|+++|.+++.+.+ . ++++|+++|+++|||++|+|
T Consensus 238 g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp~-~M~~~v~~~L~~~~~~~g-~---~~~~~~~~l~~~~r~~~e~y 310 (310)
T 3vo2_A 238 GEKMYIQTRMAEYREELWELLKKDNTYVYMCGLK-GMEKGIDDIMLNLAAKDG-I---DWMQYKKQLKKGEQWNVEVY 310 (310)
T ss_dssp CCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEEST-THHHHHHHHHHHHHHHTT-C---CHHHHHHHHHHTTSEEEEEC
T ss_pred CcceehHHHHHHHHHHHHHhcccCCcEEEEeCCH-HHHHHHHHHHHHHHHHcC-c---CHHHHHHHHHHCCceEEecC
Confidence 478999999998888888876 48999999998 999999999999998865 3 47889999999999999999
No 13
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=100.00 E-value=1.1e-34 Score=298.04 Aligned_cols=211 Identities=20% Similarity=0.342 Sum_probs=172.2
Q ss_pred CCccccccCCCCCC---CCCEEEEEEEEEEeeCCCCCC-ccCccchhhhccCCCCCceEEEEeecCCCC-CCC--CCCCe
Q 008731 331 LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRK-RTGLCSVWLAGLDPQQGIYIPAWFQKGSLP-RPP--PSVPL 403 (556)
Q Consensus 331 ~~pR~YSIaSsp~~---~~~~i~l~v~~v~~~~~~~~~-~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~-lp~--~~~pi 403 (556)
+.+|+|||+|+|.. .++.++|+|+++.|.++.++. +.|.+|+||+++++ |++|.+.+|.|.|. +|. ..+|+
T Consensus 91 ~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~~~~~~~~~~~~~~ 168 (314)
T 2rc5_A 91 YTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKP--GDEVTMTGPSGKKFLLPNTDFSGDI 168 (314)
T ss_dssp CCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCT--TCEEEEEEEECSSSCCCSSCBCSCE
T ss_pred CCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCC--cCEEEEEeccCCceeCCCCCCCCCE
Confidence 68899999999852 358999999887666543333 57999999999999 99999999999865 443 57899
Q ss_pred EEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEecCCC----
Q 008731 404 ILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP---- 479 (556)
Q Consensus 404 imIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~---- 479 (556)
||||+|||||||++|++++......+..++++||||||+.+|++|++||+++.+.++++ ++++++||+++
T Consensus 169 vlIagGtGIaP~~s~l~~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~ 242 (314)
T 2rc5_A 169 MFLATGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKNF------KLITAISREEKNSFD 242 (314)
T ss_dssp EEEEEGGGGHHHHHHHHHHHTTCSSCBCSCEEEEEEESSGGGSCSHHHHHHHHHHHSSE------EEEEEETTTCBCTTT
T ss_pred EEEECCccHHHHHHHHHHHHHhcccCCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCCcE------EEEEEECCCCCcccC
Confidence 99999999999999999987653211126899999999999999999999998754678 89999999743
Q ss_pred -CccchhhhHHHcHHHHHHhHcCCCEEEEe-CCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEecc
Q 008731 480 -QKVYVQHKMLEQSQRIWNLLLSKASIYVA-GSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 555 (556)
Q Consensus 480 -~k~yVqd~l~~~~~~l~~~l~~~~~iyvC-G~~~~m~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (556)
.++|||+.+.+..+.+++.+.++..+|+| ||+ .|+++|+++|.++.. .++ .++.|+.+|+++|||++|+|
T Consensus 243 g~~~~v~~~l~~~~~~l~~~~~~~~~~yvCGGp~-~m~~~v~~~L~~~g~--~~i---~~e~f~~~l~~~gr~~~e~~ 314 (314)
T 2rc5_A 243 GGRMYISHRVREQAEAVKKILNGGGRFYICGGPK-GMEKGVIEEIQKISG--NTG---TYEEFKHHLEGAHQLFVETY 314 (314)
T ss_dssp SSBCCHHHHHHHTHHHHHHHHHHTCEEEEEESST-TTHHHHHHHHHHHHT--CCS---CHHHHHHHHHHTTCEEEEEC
T ss_pred CCceehhHHHHHhHHHHHHHhhcCCeEEEeCCcH-HHHHHHHHHHHHHHh--ccc---hHHHHHHHHHHCCCEEEecC
Confidence 36899999998777777766433345999 997 999999999999765 222 46789999999999999999
No 14
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=6e-35 Score=299.50 Aligned_cols=224 Identities=29% Similarity=0.431 Sum_probs=185.2
Q ss_pred CchhHHHhhcCC---------CCccccccCCCCCC---CCCEEEEEEEEEEeeCCCCC----CccCccchhhhccCCCCC
Q 008731 319 MPIDWLVQLVPP---------LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKR----KRTGLCSVWLAGLDPQQG 382 (556)
Q Consensus 319 ~p~~~l~~~lp~---------~~pR~YSIaSsp~~---~~~~i~l~v~~v~~~~~~~~----~~~G~~S~~L~~l~~~~G 382 (556)
.|+|++...+|. ..+|+|||+|+|.. .++.++|+|+++.|.++... .+.|.+|+||+++++ |
T Consensus 62 ~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~--G 139 (311)
T 3lo8_A 62 WEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKP--G 139 (311)
T ss_dssp CTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCT--T
T ss_pred cCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCC--c
Confidence 467776666664 37899999999964 25799999987654433221 267999999999999 9
Q ss_pred ceEEEEeecCCCCC-C--CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCC--CCCCEEEEEcccCCCccccHHHHHHhHh
Q 008731 383 IYIPAWFQKGSLPR-P--PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSL 457 (556)
Q Consensus 383 ~~v~v~~~~g~F~l-p--~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~ 457 (556)
++|.+.+|.|.|.+ | +...|+||||+|||||||++|++++......+ ..++++||||||+.+|++|.+||+++.+
T Consensus 140 d~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~ 219 (311)
T 3lo8_A 140 DKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLK 219 (311)
T ss_dssp CEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHH
T ss_pred CEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHH
Confidence 99999999998765 4 26789999999999999999999988654311 1267999999999999999999999987
Q ss_pred cCC-CccccCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCC
Q 008731 458 NDG-VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEA 532 (556)
Q Consensus 458 ~~g-~l~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~ 532 (556)
.++ ++ ++++++||++. .++||++.+.+..+.+++++.+++.||+|||+ .|+++|+++|.+++.+.+
T Consensus 220 ~~~~~~------~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~~~~~g-- 290 (311)
T 3lo8_A 220 QYPDNF------RYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLK-GMMPGIQDTLKKVAERRG-- 290 (311)
T ss_dssp HCTTTE------EEEEEETTTC-------CCHHHHHHHTHHHHHHHHHTTCEEEEEECG-GGHHHHHHHHHHHHHHTT--
T ss_pred hCCCcE------EEEEEECCCCcccCCCcceehHHHHHHHHHHHHhhcCCcEEEEECCH-HHHHHHHHHHHHHHHhcc--
Confidence 743 67 89999999764 47899999999888888877779999999998 999999999999998765
Q ss_pred CHHHHHHHHHHHHHCCCEEEecc
Q 008731 533 SRDSAANWLKALQRAGRYHVEAW 555 (556)
Q Consensus 533 ~~~~a~~~~~~l~~~~Ry~~dvw 555 (556)
.+|++|+++|+++|||++|+|
T Consensus 291 --~~~~~~~~~l~~~~ry~~e~y 311 (311)
T 3lo8_A 291 --ESWDQKLAQLKKNKQWHVEVY 311 (311)
T ss_dssp --CCHHHHHHHHHHTTCEEEEEC
T ss_pred --HHHHHHHHHHHHCCcEEEecC
Confidence 357899999999999999999
No 15
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=100.00 E-value=4e-33 Score=286.60 Aligned_cols=286 Identities=20% Similarity=0.292 Sum_probs=206.6
Q ss_pred cCCccee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEeecCccc
Q 008731 154 NKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKN 232 (556)
Q Consensus 154 ~~~~~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~i~~~~~~~ 232 (556)
.+.+++. +|+++.+|+.++...+|+||+|+.+ ..+.|.+|.+++|.|+..+.. .+.+..+
T Consensus 11 ~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~GQ~~~i~~~~~~~~------------------~~~~~~~ 71 (316)
T 3jqq_A 11 TVKNPLKCKIVDKINLVRPNSPNEVYHLEINHN-GLFKYLEGHTCGIIPYYNELD------------------NNPNNQI 71 (316)
T ss_dssp CSSSCEEEEEEEEEECSCTTCSCCEEEEEEECT-TCCCCCTTCEEEECTTCC----------------------------
T ss_pred cCCCCEEEEEEeeEEccCCCCCCceEEEEEeCC-CCcceecCcEeEEECCCcccc------------------ccccccc
Confidence 3344577 9999999999888899999999997 579999999999999876432 0000000
Q ss_pred CCCCccCCCccccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHHHHhh
Q 008731 233 YLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLE 312 (556)
Q Consensus 233 ~~~~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~ 312 (556)
..|+ .++-++. -+ . +..+.
T Consensus 72 ~~~~-----------------~~~~~~~-~~-------------------------------~--------h~~~~---- 90 (316)
T 3jqq_A 72 NKDH-----------------NIINTTN-HT-------------------------------N--------HNNIA---- 90 (316)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-----------------ccccccc-cc-------------------------------c--------ccccc----
Confidence 0110 1111111 00 0 00000
Q ss_pred hCCCCCCchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCC---CCCCccCccchhhhccCCCCCceEEEEe
Q 008731 313 DFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP---YKRKRTGLCSVWLAGLDPQQGIYIPAWF 389 (556)
Q Consensus 313 ~f~s~~~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~---~~~~~~G~~S~~L~~l~~~~G~~v~v~~ 389 (556)
....-+...+|+|||+|+|.. +.++|+|+++.|.+. .++.+.|.||+||+++++ |++|.+.+
T Consensus 91 -----------~~~~~g~~~~R~ySIaS~p~~--~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~g 155 (316)
T 3jqq_A 91 -----------LSHIKKQRCARLYSISSSNNM--ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKI--NDDIYLTG 155 (316)
T ss_dssp -----------------CCCCEEEEBCSCTTS--SSEEEEEECCBC---------CCBCHHHHHHHTCCT--TCEEEEEE
T ss_pred -----------cccCCCcccceeeecccCCCC--CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCC--CCEEEEEe
Confidence 000124578999999999964 789999988877643 124578999999999999 99999999
Q ss_pred ecCCCCCC-C---CCCCeEEEcCCCCchhhHHHHHHHHHhhCC-------CCCCCEEEEEcccCCCccccHHHHHHhHhc
Q 008731 390 QKGSLPRP-P---PSVPLILIGPGTGCAPFRGFVEERAIQSSS-------GPAAPIIFFFGCRNEDDFLYRELWLSHSLN 458 (556)
Q Consensus 390 ~~g~F~lp-~---~~~piimIa~GTGIAPf~s~lq~~~~~~~~-------~~~~~~~L~~G~R~~~d~ly~~el~~~~~~ 458 (556)
|.|.|.+| + ..+|+||||+|||||||+||++++...... ...++++||||||+.+|++|.+||+++.+.
T Consensus 156 P~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~ 235 (316)
T 3jqq_A 156 AHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKM 235 (316)
T ss_dssp EECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHH
T ss_pred cCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHh
Confidence 99999998 4 379999999999999999999998865310 023789999999999999999999999876
Q ss_pred CC-CccccCCCcEEEEEecCCC---CccchhhhHHHcHHHHHHhHc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCC
Q 008731 459 DG-VFSEAKGGGFYVAFSRKQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEAS 533 (556)
Q Consensus 459 ~g-~l~~~~~~~~~~a~Sr~~~---~k~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~ 533 (556)
++ ++ ++++++||++. .++|||+.+.+....+++++. .++.||+|||+ .|.++++++|.+. +.++
T Consensus 236 ~~~~~------~~~~~~s~~~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP~-~m~~~v~~~l~~~----G~~~ 304 (316)
T 3jqq_A 236 YPNNI------NIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKK-SIRYKVMDILKSH----DQFD 304 (316)
T ss_dssp CTTTE------EEEEEEGGGCC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEECS-THHHHHHHHHHC--------C
T ss_pred CCCcE------EEEEEECCCcccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCCH-HHHHHHHHHHHHc----CCCc
Confidence 44 68 89999999853 589999999998888888775 48999999998 9998888777653 3222
Q ss_pred HHHHHHHHHHHHHCCCEEEecc
Q 008731 534 RDSAANWLKALQRAGRYHVEAW 555 (556)
Q Consensus 534 ~~~a~~~~~~l~~~~Ry~~dvw 555 (556)
. ...+|++.|+|
T Consensus 305 ~----------v~~~rih~E~f 316 (316)
T 3jqq_A 305 E----------KKKKRVHVEVY 316 (316)
T ss_dssp H----------HHHTTEEEEEC
T ss_pred c----------cccccEEEEeC
Confidence 2 34568998875
No 16
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=99.94 E-value=2.6e-26 Score=227.72 Aligned_cols=180 Identities=15% Similarity=0.184 Sum_probs=149.0
Q ss_pred CchhHHHhhcCC-CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCCCCC
Q 008731 319 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~l 396 (556)
.|+|++...+|. ...|+|||+|+|.. .+.++|+| ++...|.+|+||. ++++ |++|.+.+|.|.|.+
T Consensus 45 ~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~i~v---------k~~~~G~~s~~l~~~l~~--Gd~v~v~gP~G~~~~ 112 (250)
T 1tvc_A 45 EPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLI---------RVLPEGRFSDYLRNDARV--GQVLSVKGPLGVFGL 112 (250)
T ss_dssp CSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEE---------CCCTTSSSHHHHHHHSSS--SSEEEEEEEECCCSC
T ss_pred CCCcEEEEEeCCCccccccccCCCCCC-CCeEEEEE---------EECCCCCchHHHHhcCCC--CCEEEEEcCcccccc
Confidence 477877766776 67899999999863 47899998 3345699999995 8999 999999999999998
Q ss_pred C-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEe
Q 008731 397 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 475 (556)
Q Consensus 397 p-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 475 (556)
+ +...+++|||+|||||||++|+++....+.. .+++|+||+|+.+|++|.+||+++.+.++++ ++++++|
T Consensus 113 ~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~s 183 (250)
T 1tvc_A 113 KERGMAPRYFVAGGTGLAPVVSMVRQMQEWTAP---NETRIYFGVNTEPELFYIDELKSLERSMRNL------TVKACVW 183 (250)
T ss_dssp CCCSSSCEEEEEESSTTHHHHHHHHHHHHHTCC---SCEEEEEECSSSTTCCCHHHHHHHHHHSSSC------EEEECCS
T ss_pred CccCCceEEEEEeccCHHHHHHHHHHHHhcCCC---ceEEEEEEeCCHHHhhhHHHHHHHHHhCCCe------EEEEEec
Confidence 8 5568999999999999999999999876543 7899999999999999999999998755778 8888999
Q ss_pred cCCC----CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHH
Q 008731 476 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 476 r~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
|+++ .++||++.+.+... +. ..+..+|+|||+ .|+++|++.|.+
T Consensus 184 ~~~~~~~g~~g~v~~~l~~~~~---~~-~~~~~vyvCGp~-~m~~~v~~~l~~ 231 (250)
T 1tvc_A 184 HPSGDWEGEQGSPIDALREDLE---SS-DANPDIYLCGPP-GMIDAACELVRS 231 (250)
T ss_dssp SCSSCCSSSSSSSSHHHHHHHH---HS-SSSSEEEEESSH-HHHHHHHHHHHH
T ss_pred cCCCCcCCccceehHHHHhhhh---cc-cCCcEEEEeCCH-HHHHHHHHHHHH
Confidence 8533 46788887764321 11 247899999998 999999988765
No 17
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=99.93 E-value=5.5e-26 Score=230.17 Aligned_cols=181 Identities=19% Similarity=0.333 Sum_probs=141.9
Q ss_pred CCccccccCCCCCCCCCEEEEEEEEEEe--eCC----CCCCccCccchhhhccCCCCCceEEEEeecCCCCCCCCCCCeE
Q 008731 331 LKTRAFSISSSPLAHPNQVHLTVSVVSW--TTP----YKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLI 404 (556)
Q Consensus 331 ~~pR~YSIaSsp~~~~~~i~l~v~~v~~--~~~----~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~lp~~~~pii 404 (556)
...|+|||+|+|.. .+.++|+|+++.. .+. .++...|.+|+||+++++ |++|.+.+|.|.|.+++...|+|
T Consensus 84 ~~~R~ySi~s~~~~-~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~--Gd~v~v~gP~G~f~~~~~~~~~v 160 (290)
T 2r6h_A 84 ETVRAYSMANYPAE-GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKP--GDKVMMSGPYGDFHIQDTDAEML 160 (290)
T ss_dssp CEEEEEECCSCTTC-CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCT--TCEEEEEEEECCCCCCSSSCEEE
T ss_pred CcceeeeccCCCCC-CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCC--CCEEEEEecccCCcCCCCCCeEE
Confidence 56899999999864 5789999865311 000 012457999999999999 99999999999999876678999
Q ss_pred EEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEecCCC-----
Q 008731 405 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----- 479 (556)
Q Consensus 405 mIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~----- 479 (556)
|||+|||||||++|++++...... ..+++||||+|+.+|++|++||+++.+.++++ ++++++||+..
T Consensus 161 liagGtGitP~~s~l~~~~~~~~~--~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~ 232 (290)
T 2r6h_A 161 YIGGGAGMAPLRAQILHLFRTLKT--GRKVSYWYGARSKNEIFYEEDFREIEREFPNF------KFHIALSDPQPEDNWT 232 (290)
T ss_dssp EEEEGGGHHHHHHHHHHHHHTSCC--CSCEEEEEEESSGGGCCSHHHHHHHHHHCTTE------EEEEEESSCCGGGCCC
T ss_pred EEECccCHHHHHHHHHHHHHhcCC--CCcEEEEEEcCCHHHHHHHHHHHHHHHhCCCe------EEEEEEccCCcccCCC
Confidence 999999999999999988775322 27899999999999999999999998765678 89999998642
Q ss_pred -CccchhhhHHHcHHHHHHhH-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 480 -QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 480 -~k~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
.++||++.+.+. .+.+.. ..++.+|+|||+ .|+++|++.|.+.
T Consensus 233 g~~g~v~~~~~~~--~l~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~~ 277 (290)
T 2r6h_A 233 GYVGFIHQVIYDN--YLKDHDAPEDIEYYMCGPG-PMANAVKGMLENL 277 (290)
T ss_dssp SCBSCHHHHHHHH--TTTTCSCGGGEEEEEECCH-HHHHHHHHHHHHH
T ss_pred CeeEecCHHHHHh--HHhhccCcCCcEEEEECCH-HHHHHHHHHHHHc
Confidence 367888766432 011111 136789999998 9999999888654
No 18
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=99.93 E-value=6.2e-26 Score=222.31 Aligned_cols=176 Identities=18% Similarity=0.209 Sum_probs=143.1
Q ss_pred CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchh-hhccCCCCCceEEEEeecCCCCCC
Q 008731 319 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW-LAGLDPQQGIYIPAWFQKGSLPRP 397 (556)
Q Consensus 319 ~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~-L~~l~~~~G~~v~v~~~~g~F~lp 397 (556)
.|+|++...+|....|+|||+|+|.. ++.++|+|++ ...|.+|++ +.++++ |++|.+.+|.|.|.++
T Consensus 31 ~pGq~v~l~~~~~~~R~ySi~s~~~~-~~~l~l~i~~---------~~~G~~s~~~~~~l~~--Gd~v~v~gP~G~~~~~ 98 (232)
T 1qfj_A 31 RAGQYLMVVMDERDKRPFSMASTPDE-KGFIELHIGA---------SEINLYAKAVMDRILK--DHQIVVDIPHGEAWLR 98 (232)
T ss_dssp CTTCEEEEESSSSCEEEEECCSCTTS-TTCEEEEEC---------------CCHHHHHHHHH--HSEEEEEEEECSCCCC
T ss_pred CCCCEEEEECCCCceeeeecCCCCCC-CCcEEEEEEE---------ccCCchhHHHHHhCCC--CCEEEEeCCccceEeC
Confidence 57888877788888999999999864 4689999843 345766765 678999 9999999999999988
Q ss_pred -CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 398 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 398 -~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
+...+++|||+|||||||+++++++...+.. .+++|+||+|+.+|++|.+||+++.+.++++ +++.++|+
T Consensus 99 ~~~~~~~vliagG~GitP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~s~ 169 (232)
T 1qfj_A 99 DDEERPMILIAGGTGFSYARSILLTALARNPN---RDITIYWGGREEQHLYDLCELEALSLKHPGL------QVVPVVEQ 169 (232)
T ss_dssp SCSSSCEEEEEETTCHHHHHHHHHHHHHHCTT---CCEEEEEEESSGGGCTTHHHHHHHHHHCTTE------EEEEEESS
T ss_pred CCCCCcEEEEEecccHhHHHHHHHHHHhcCCC---CcEEEEEeeCCHHHhhhHHHHHHHHHHCCCe------EEEEEEcC
Confidence 5678999999999999999999999876543 7899999999999999999999998765778 89999998
Q ss_pred CCC----CccchhhhHHHcHHHHHHhHc-CCCEEEEeCCCCccHHHHHHHH
Q 008731 477 KQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTF 522 (556)
Q Consensus 477 ~~~----~k~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~m~~~v~~~L 522 (556)
+++ .++||++.+.+. +.. .+..+|+|||+ .|.+++++.|
T Consensus 170 ~~~~~~g~~g~v~~~~~~~------~~~~~~~~vyvCGp~-~m~~~v~~~l 213 (232)
T 1qfj_A 170 PEAGWRGRTGTVLTAVLQD------HGTLAEHDIYIAGRF-EMAKIARDLF 213 (232)
T ss_dssp CCTTCCSEESCHHHHHHHH------CSCCTTCEEEEESCH-HHHHHHHHHH
T ss_pred CCCCcCCceeeHHHHHHHh------cCCccccEEEEECCH-HHHHHHHHHH
Confidence 654 357888766542 112 37899999998 9999998877
No 19
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=99.92 E-value=5.1e-26 Score=225.15 Aligned_cols=184 Identities=16% Similarity=0.172 Sum_probs=147.7
Q ss_pred CchhHHHhhcCC---CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEE-eecCCC
Q 008731 319 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGSL 394 (556)
Q Consensus 319 ~p~~~l~~~lp~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~-~~~g~F 394 (556)
.|+|++...+|. ...|+|||+|+|.. +.++|+|.. .+.|.+|+||+++++ |++|.+. +|.|.|
T Consensus 32 ~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gP~G~f 98 (248)
T 1fdr_A 32 TAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVT---------VPDGKLSPRLAALKP--GDEVQVVSEAAGFF 98 (248)
T ss_dssp CTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEEC---------CTTCSSHHHHHTCCT--TCEEEEESSCBCCC
T ss_pred CCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEE---------eCCCchhhHHHhCCC--cCEEEEecCCccee
Confidence 477877766763 56899999999864 789999842 356999999999999 9999999 999999
Q ss_pred CCC-CC-CCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcC-CCccccCCCcEE
Q 008731 395 PRP-PP-SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGFY 471 (556)
Q Consensus 395 ~lp-~~-~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~~~~~~~~~ 471 (556)
.++ .. ..+++|||+|||||||++++++....+.. .+++|+||+|+.+|++|.+||+++.+.+ +++ +++
T Consensus 99 ~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~------~~~ 169 (248)
T 1fdr_A 99 VLDEVPHCETLWMLATGTAIGPYLSILRLGKDLDRF---KNLVLVHAARYAADLSYLPLMQELEKRYEGKL------RIQ 169 (248)
T ss_dssp SGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCTTC---SEEEEEEEESSGGGCTTHHHHHHHHHHTTTSE------EEE
T ss_pred EcCCCCCCceEEEEEecccHHHHHHHHHHHHhhCCC---CcEEEEEEcCCHHHhhHHHHHHHHHHhCcCcE------EEE
Confidence 987 43 68999999999999999999987543322 6899999999999999999999998753 478 889
Q ss_pred EEEecCCC---CccchhhhHHHcH-HHHHHh-Hc-CCCEEEEeCCCCccHHHHHHHH-HHH
Q 008731 472 VAFSRKQP---QKVYVQHKMLEQS-QRIWNL-LL-SKASIYVAGSATKMPSDVWSTF-EEI 525 (556)
Q Consensus 472 ~a~Sr~~~---~k~yVqd~l~~~~-~~l~~~-l~-~~~~iyvCG~~~~m~~~v~~~L-~~i 525 (556)
.++|+++. .+++|++.+.+.. ...... .. .+..+|+|||+ .|.++|++.| .+.
T Consensus 170 ~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp~-~m~~~v~~~l~~~~ 229 (248)
T 1fdr_A 170 TVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNP-QMVRDTQQLLKETR 229 (248)
T ss_dssp EEESSSCCTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECH-HHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCCH-HHHHHHHHHHHHHc
Confidence 99998764 3688998876542 222211 22 47899999998 9999999888 553
No 20
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=99.92 E-value=8.8e-26 Score=222.80 Aligned_cols=180 Identities=18% Similarity=0.215 Sum_probs=144.2
Q ss_pred CchhHHHhhcC---CCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCC
Q 008731 319 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 395 (556)
Q Consensus 319 ~p~~~l~~~lp---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~ 395 (556)
.|+|++...+| ....|+|||+|.+.. .+.++|+|.+ ...|.+|+||+++++ |++|.+.+|.|.|.
T Consensus 43 ~pGq~v~l~~~~~g~~~~R~ysi~s~~~~-~~~~~l~vk~---------~~~G~~S~~l~~l~~--Gd~v~v~gP~G~f~ 110 (243)
T 2eix_A 43 PIGQHMSVKATVDGKEIYRPYTPVSSDDE-KGYFDLIIKV---------YEKGQMSQYIDHLNP--GDFLQVRGPKGQFD 110 (243)
T ss_dssp CTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEEC---------CTTCHHHHHHHTCCT--TCEEEEEEEECSCC
T ss_pred CCceEEEEEEeeCCCEEEeeeeecCCCCC-CCEEEEEEEE---------cCCCCcchHhhcCCC--CCEEEEECCeEEEE
Confidence 46777666555 236899999999853 5789999843 356999999999999 99999999999999
Q ss_pred CC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEE
Q 008731 396 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 474 (556)
Q Consensus 396 lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 474 (556)
++ +...+++|||+|||||||++|++++...... ..+++|+||+|+.+|++|++||+++.+.++++ ++++++
T Consensus 111 ~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~--~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~ 182 (243)
T 2eix_A 111 YKPNMVKEMGMIAGGTGITPMLQVARAIIKNPKE--KTIINLIFANVNEDDILLRTELDDMAKKYSNF------KVYYVL 182 (243)
T ss_dssp CCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTTC--CCEEEEEEEEEEGGGCTTHHHHHHHHHHCTTE------EEEEEE
T ss_pred eCCCCCcEEEEEecCccHHHHHHHHHHHHhCCCC--CcEEEEEEEcCCHHHhhHHHHHHHHHHHCCCe------EEEEEe
Confidence 88 5678999999999999999999998764211 26899999999999999999999998765678 899999
Q ss_pred ecCCC----CccchhhhHHHcHHHHHHhHc---CCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 475 SRKQP----QKVYVQHKMLEQSQRIWNLLL---SKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 475 Sr~~~----~k~yVqd~l~~~~~~l~~~l~---~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
|++++ .++||++.+.+ +.+. .+..+|+|||+ .|+++|++.|.+.
T Consensus 183 s~~~~~~~g~~g~v~~~~l~------~~~~~~~~~~~vy~CGp~-~m~~~v~~~l~~~ 233 (243)
T 2eix_A 183 NNPPAGWTGGVGFVSADMIK------QHFSPPSSDIKVMMCGPP-MMNKAMQGHLETL 233 (243)
T ss_dssp EECCTTCCSEESSCCHHHHH------HHSCCTTSSEEEEEESSH-HHHHHHHHHHHHH
T ss_pred CCCCccccCcCCccCHHHHH------HhcCCCCCCeEEEEECCH-HHHHHHHHHHHHc
Confidence 98543 35677753321 1222 35789999998 9999999888654
No 21
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.92 E-value=2.2e-25 Score=231.00 Aligned_cols=178 Identities=21% Similarity=0.275 Sum_probs=148.4
Q ss_pred CchhHHHhhcCC-CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecCCCCC
Q 008731 319 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~l 396 (556)
.|+|++...+|. ...|+|||+|+|. .+.++|+|++ ...|.+|+||. ++++ |+.|.+.+|.|.|.+
T Consensus 140 ~pGQ~v~l~~~~~~~~R~ySi~s~~~--~~~l~~~vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~G~f~~ 206 (338)
T 1krh_A 140 LAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVRN---------VPQGKMSEYLSVQAKA--GDKMSFTGPFGSFYL 206 (338)
T ss_dssp CTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEEC---------CTTCHHHHHHHTTCCT--TCEEEEEEEECSCSC
T ss_pred CCCCeEEEEcCCCCccccccccCCCC--CCeEEEEEEE---------cCCCCchhhHhhccCC--CCEEEEECCccceEe
Confidence 477777666776 5789999999986 5899999843 35699999995 8999 999999999999998
Q ss_pred CCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 397 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 397 p~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
+....|++|||+|||||||++|++++...+.. .+++||||+|+.+|++|.+||+++.+.++++ ++++++|+
T Consensus 207 ~~~~~~~vliagGtGiaP~~s~l~~l~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~ 277 (338)
T 1krh_A 207 RDVKRPVLMLAGGTGIAPFLSMLQVLEQKGSE---HPVRLVFGVTQDCDLVALEQLDALQQKLPWF------EYRTVVAH 277 (338)
T ss_dssp CCCSSCEEEEEEGGGHHHHHHHHHHHHHHCCS---SCEEEEEEESSGGGCCCHHHHHHHHHHCTTE------EEEEEETT
T ss_pred CCCCceEEEEEccccHhHHHHHHHHHHHcCCC---CeEEEEEEeCCHHHhhhHHHHHHHHHhCCCe------EEEEEEec
Confidence 84358999999999999999999999886543 7899999999999999999999998765778 89999998
Q ss_pred CCC---CccchhhhHHHcHHHHHHhHc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 477 KQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 477 ~~~---~k~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
++. .++||++.+.+. .+. .+..+|+|||+ .|.+++++.|.+.
T Consensus 278 ~~~~~~~~g~v~~~l~~~------~~~~~~~~vy~CGp~-~m~~~v~~~l~~~ 323 (338)
T 1krh_A 278 AESQHERKGYVTGHIEYD------WLNGGEVDVYLCGPV-PMVEAVRSWLDTQ 323 (338)
T ss_dssp CCSSSSEESCSGGGCCGG------GGGGGCSEEEEEEEH-HHHHHHHHHHHHH
T ss_pred CCCCCCccCccCHHHHHh------hcccCCcEEEEECCH-HHHHHHHHHHHHc
Confidence 654 367888877632 112 47889999998 9999999888653
No 22
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=99.92 E-value=5e-26 Score=228.82 Aligned_cols=192 Identities=17% Similarity=0.156 Sum_probs=146.8
Q ss_pred CchhHHHhhcC---CCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCCC
Q 008731 319 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 395 (556)
Q Consensus 319 ~p~~~l~~~lp---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~ 395 (556)
.|+|++...+| ...+|+|||+|+|. .++.++|+|+++.+.+..+....|.+|+||+++++ |++|.+.+|.|.|.
T Consensus 48 ~pGQ~v~l~~~~~g~~~~R~ySi~s~~~-~~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~~~ 124 (275)
T 1umk_A 48 PVGQHIYLSARIDGNLVVRPYTPISSDD-DKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQI--GDTIEFRGPSGLLV 124 (275)
T ss_dssp CTTCEEEEEEEETTEEEEEEECCSSCTT-CCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCT--TCEEEEEEEECSEE
T ss_pred CCCcEEEEEEeeCCcEEEeccccCCccC-CCCeEEEEEEEeccCcccccCCCChhHHHHhcCCC--CCEEEEEcCccceE
Confidence 46776655543 24789999999985 35899999977655544333467999999999999 99999999999875
Q ss_pred C--------C-C--------CCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhc
Q 008731 396 R--------P-P--------PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN 458 (556)
Q Consensus 396 l--------p-~--------~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~ 458 (556)
+ + + ...++||||+|||||||++|++++..... ...+++|+||+|+.+|++|++||+++.+.
T Consensus 125 ~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~~--~~~~v~l~~~~r~~~d~~~~~el~~l~~~ 202 (275)
T 1umk_A 125 YQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPD--DHTVCHLLFANQTEKDILLRPELEELRNK 202 (275)
T ss_dssp EEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTT--CCCEEEEEEEESSGGGCTTHHHHHHHHHH
T ss_pred ecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHhCCC--CCcEEEEEEEcCCHHHhhHHHHHHHHHHh
Confidence 3 2 1 35799999999999999999999876421 12789999999999999999999999876
Q ss_pred CC-CccccCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHH-HHHHHHHHH
Q 008731 459 DG-VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPS-DVWSTFEEI 525 (556)
Q Consensus 459 ~g-~l~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~-~v~~~L~~i 525 (556)
++ ++ ++++++|+++. .++||++.+.+. ......+++.+|+|||+ .|++ ++++.|.+.
T Consensus 203 ~~~~~------~~~~~~s~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp~-~m~~~~v~~~L~~~ 265 (275)
T 1umk_A 203 HSARF------KLWYTLDRAPEAWDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGPP-PMIQYACLPNLDHV 265 (275)
T ss_dssp CTTTE------EEEEEESSCCSSCSSEESSCCHHHHHH---HSCCGGGCCEEEEESCH-HHHHHTTHHHHHHH
T ss_pred CcCcE------EEEEEEcCCCccccCccCccCHHHHHH---hcCCCCCCeEEEEECCH-HHHHHHHHHHHHHc
Confidence 44 57 88899998653 256787643221 11111247899999998 8988 888888754
No 23
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=99.92 E-value=4.1e-26 Score=229.01 Aligned_cols=200 Identities=18% Similarity=0.251 Sum_probs=153.1
Q ss_pred CchhHHHhhcC---CCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEE-eecCCC
Q 008731 319 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGSL 394 (556)
Q Consensus 319 ~p~~~l~~~lp---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~-~~~g~F 394 (556)
.|+|++...+| ....|+|||+|+|.. +.++|+|. +...|.+|+||+++++ |++|.+. +|.|.|
T Consensus 48 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~--~~~~~~v~---------~~~~G~~s~~l~~l~~--Gd~v~v~~gP~G~~ 114 (271)
T 4fk8_A 48 NNGEFTMVGLEVDGKPLTRAYSIVSPNYE--EHLEFFSI---------KVQNGPLTSRLQHLKV--GDPVLIGKKPTGTL 114 (271)
T ss_dssp CTTCEEEEEEEETTEEEEEEEECCSCTTS--SSEEEEEE---------CCTTCTTHHHHTTCCT--TCEEEEESCCBCSC
T ss_pred CCCCEEEEEccCCCceeeeeEeccCCCCC--CcEEEEEE---------EECCCchhhHHhcCCC--CCEEEEecCCCcce
Confidence 47787777676 245899999999853 67888873 2356999999999999 9999999 999999
Q ss_pred CCC--CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCC--------Cccc
Q 008731 395 PRP--PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG--------VFSE 464 (556)
Q Consensus 395 ~lp--~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g--------~l~~ 464 (556)
.++ ....+++|||+|||||||+++++++...... .+++|+||+|+.+|++|.+||+++.+.+. ++
T Consensus 115 ~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~-- 189 (271)
T 4fk8_A 115 VADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERF---DKVVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIREKL-- 189 (271)
T ss_dssp CGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHHC---SEEEEEECCCSHHHHHHHHHHHTCCTTCTTHHHHHHHHE--
T ss_pred ecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCCC---CCEEEEEecCCHHHHhHHHHHHHHHHhCccccccccceE--
Confidence 887 3678999999999999999999998775544 68999999999999999999999876633 46
Q ss_pred cCCCcEEEEEecCCC-CccchhhhHHHcHHHHHHh-----H-cCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHH
Q 008731 465 AKGGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNL-----L-LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSA 537 (556)
Q Consensus 465 ~~~~~~~~a~Sr~~~-~k~yVqd~l~~~~~~l~~~-----l-~~~~~iyvCG~~~~m~~~v~~~L~~i~~~~~~~~~~~a 537 (556)
+++.++|+++. .++++++.+.+. .+.+. + .+++.+|+|||+ .|+++|++.|.+.......
T Consensus 190 ----~~~~~~s~~~~~~~G~v~~~~~~~--~l~~~~~~~~~~~~~~~v~vCGp~-~m~~~v~~~l~~~gv~~~~------ 256 (271)
T 4fk8_A 190 ----VYYPTVTREEFENEGRITDLIASG--KLFTDLDMPPFSPEQDRVMLCGST-AMLKDTTELLKKAGLVEGK------ 256 (271)
T ss_dssp ----EEEECC-------CCHHHHHHHHS--HHHHHTTCCCCCTTTEEEEEEECH-HHHHHHHHHHHHTTCCBCB------
T ss_pred ----EEEEEecCCccccccccChHHhcc--hhhhhcccccCCCCCCEEEEECCH-HHHHHHHHHHHHcCCchhh------
Confidence 78888888764 467888877553 11111 1 247899999998 9999999988765433222
Q ss_pred HHHHHHHHHCCCEEEecc
Q 008731 538 ANWLKALQRAGRYHVEAW 555 (556)
Q Consensus 538 ~~~~~~l~~~~Ry~~dvw 555 (556)
+...|+|+.|.|
T Consensus 257 ------i~~~~~~~~E~y 268 (271)
T 4fk8_A 257 ------NSAPGHYVIERA 268 (271)
T ss_dssp ------TTBCBSEEEEES
T ss_pred ------cCCCCcEEEEEe
Confidence 233678888765
No 24
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=99.92 E-value=2.4e-25 Score=219.56 Aligned_cols=180 Identities=17% Similarity=0.277 Sum_probs=143.5
Q ss_pred CchhHHHhhcCCC-----CccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecC
Q 008731 319 MPIDWLVQLVPPL-----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG 392 (556)
Q Consensus 319 ~p~~~l~~~lp~~-----~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g 392 (556)
.|+|++...+|.- .+|+|||+|+|.. +.++|+|..+.. +....|.+|+||+ ++++ |++|.+.+|.|
T Consensus 35 ~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~~~i~vk~~~~----~~~~~G~~S~~l~~~l~~--G~~v~v~gP~G 106 (243)
T 4eh1_A 35 QPGQYIGIEVTPEGSDYREIRQYSLSHASNG--REYRISVKREGV----GSDNPGLVSHYLHNNVKV--GDSVKLYAPAG 106 (243)
T ss_dssp CTTCEEEEEECCSSCSSCEEEEEEBCSCCCS--SCEEEEEECTTT----TSSSCCHHHHHHHHHCCT--TCEEEEEEEEC
T ss_pred CCCCEEEEEEecCCCccccceeeEeccCCCC--CeEEEEEEEeec----CCCCCCeehhHHHhcCCC--CCEEEEEccCc
Confidence 4788877777632 4699999999853 788988843110 1125699999997 6999 99999999999
Q ss_pred CCCCCCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEE
Q 008731 393 SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 472 (556)
Q Consensus 393 ~F~lp~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~ 472 (556)
.|.+++...++||||+|||||||++|++++...... . ++|+||+|+.+|++|.+||+++.+.+ ++ ++++
T Consensus 107 ~~~~~~~~~~~vliagGtGitp~~~~l~~l~~~~~~---~-v~l~~~~r~~~~~~~~~el~~l~~~~-~~------~~~~ 175 (243)
T 4eh1_A 107 DFFYVERERPVVLISAGVGATPMQAILHTLAKQNKS---G-VTYLYACNSAKEHTFAQETAQLIAQQ-GW------MQQV 175 (243)
T ss_dssp SCCCCCCSSCEEEEEEGGGHHHHHHHHHHHHHTTCC---S-EEEEEEESSGGGCTTHHHHHHHHHHH-TC------EEEE
T ss_pred ccCcCCCCCCEEEEEccccHHHHHHHHHHHHHcCCC---e-EEEEEEeCChhhhhHHHHHHHHHHhC-Ce------EEEE
Confidence 999886678999999999999999999999876543 4 99999999999999999999998874 77 8899
Q ss_pred EEecCCCC---ccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 473 AFSRKQPQ---KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 473 a~Sr~~~~---k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
++|++.+. +++++..+. . +-..+..||+|||+ .|+++|++.|.+.
T Consensus 176 ~~s~~~~~~~~~g~~~~~~~-~------~~~~~~~vyvCGp~-~m~~~v~~~l~~~ 223 (243)
T 4eh1_A 176 WYRDESADDVLQGEMQLAEL-I------LPIEDGDFYLCGPI-GFMQYVVKQLLAL 223 (243)
T ss_dssp EESSCCCTTCEESSCCCTTS-C------CCTTTCEEEEEECH-HHHHHHHHHHHHH
T ss_pred EEccCCCcccccCCccHHHe-e------ccCCCcEEEEECCH-HHHHHHHHHHHHc
Confidence 99986542 455554332 1 11248899999998 8999999888764
No 25
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=99.91 E-value=3.8e-25 Score=222.27 Aligned_cols=184 Identities=17% Similarity=0.216 Sum_probs=146.2
Q ss_pred CchhHHHhhcCC----CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEE-eecCC
Q 008731 319 MPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGS 393 (556)
Q Consensus 319 ~p~~~l~~~lp~----~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~-~~~g~ 393 (556)
.|+|++...+|. ...|+|||+|+|.. +.++|+|.. .+.|.+|+||+++++ |++|.+. +|.|.
T Consensus 45 ~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~--~~~~l~v~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gP~G~ 111 (272)
T 2bgi_A 45 RSGEFVMIGLLDDNGKPIMRAYSIASPAWD--EELEFYSIK---------VPDGPLTSRLQHIKV--GEQIILRPKPVGT 111 (272)
T ss_dssp CTTCEEEEEEECTTSCEEEEEEECCSCTTC--SEEEEEEEC---------CTTCTTHHHHTTCCT--TCEEEEEEEEECS
T ss_pred CCCCEEEEEeccCCCCeeeeeeeeccCCCC--CeEEEEEEE---------ccCCCchhHHHhCCC--CCEEEEeeCCCCc
Confidence 477877666662 36899999999863 789998842 356999999999999 9999999 89999
Q ss_pred CCCC-CC-CCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHH-HhHh-----cC--CCcc
Q 008731 394 LPRP-PP-SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWL-SHSL-----ND--GVFS 463 (556)
Q Consensus 394 F~lp-~~-~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~-~~~~-----~~--g~l~ 463 (556)
|.++ .. ..+++|||+|||||||++|++++...... .+++|+||+|+.+|++|.+||+ ++.+ .+ +++
T Consensus 112 f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~- 187 (272)
T 2bgi_A 112 LVIDALLPGKRLWFLATGTGIAPFASLMREPEAYEKF---DEVIMMHACRTVAELEYGRQLVEALQEDPLIGELVEGKL- 187 (272)
T ss_dssp CCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGTSC---SEEEEEEEESSSGGGHHHHHHHHHHHHCTTTTTTSTTTE-
T ss_pred ccccccccCCeEEEEeecccHHHHHHHHHHHHhcCCC---CcEEEEEEeCCHHHhhHHHHHHHHHHhcchhhcccCCcE-
Confidence 9987 43 68999999999999999999987654333 6799999999999999999999 8876 22 577
Q ss_pred ccCCCcEEEEEecCCC-CccchhhhHHHcH-HHHHHh--Hc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 464 EAKGGGFYVAFSRKQP-QKVYVQHKMLEQS-QRIWNL--LL-SKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 464 ~~~~~~~~~a~Sr~~~-~k~yVqd~l~~~~-~~l~~~--l~-~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+++.++|+++. .++||++.+.+.. .....+ +. .++.+|+|||+ .|+++|++.|.+.
T Consensus 188 -----~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~~ 248 (272)
T 2bgi_A 188 -----KYYPTTTREEFHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGSL-AFNVDVMKVLESY 248 (272)
T ss_dssp -----EEEEEESSSCCSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEECH-HHHHHHHHHHHTT
T ss_pred -----EEEEEecCCccccCceechHHHhhhHhhhcccccCCCCCcEEEEECCH-HHHHHHHHHHHHc
Confidence 78899998743 4789998876542 111111 11 47899999998 9999998887653
No 26
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=99.91 E-value=2.8e-25 Score=221.24 Aligned_cols=183 Identities=17% Similarity=0.207 Sum_probs=145.3
Q ss_pred CchhHHHhhcC---CCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEE-eecCCC
Q 008731 319 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGSL 394 (556)
Q Consensus 319 ~p~~~l~~~lp---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~-~~~g~F 394 (556)
.|+|++...+| ....|+|||+|+|.. +.++|+|.. .+.|.+|+||+++++ |++|.+. +|.|.|
T Consensus 32 ~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~~~~~i~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gp~G~f 98 (257)
T 2qdx_A 32 KTGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIK---------VPDGPLTSRLQHLKE--GDELMVSRKPTGTL 98 (257)
T ss_dssp CTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEEC---------CTTCTTHHHHTTCCT--TCEEEECSCCBCSC
T ss_pred CCCCEEEEEecCCCCceeeeeEeecCCCC--CeEEEEEEE---------eCCCcchhHHHhCCC--CCEEEEecCCCCCc
Confidence 47777766665 246899999999864 789998843 356999999999999 9999999 799999
Q ss_pred CCC-C-CCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHH-HhHh-----cC--CCccc
Q 008731 395 PRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWL-SHSL-----ND--GVFSE 464 (556)
Q Consensus 395 ~lp-~-~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~-~~~~-----~~--g~l~~ 464 (556)
.++ . ...++||||+|||||||+++++++...+.. .+++|+||+|+.+|++|.+||+ ++.+ .+ +++
T Consensus 99 ~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~-- 173 (257)
T 2qdx_A 99 VHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERY---EKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKL-- 173 (257)
T ss_dssp CGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHHC---SEEEEEEEESSGGGCTTHHHHHTTGGGCTTTHHHHHHHE--
T ss_pred cCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCCC---CeEEEEEEcCCHHHhHhHHHHHHHHHhchhhhccCCCcE--
Confidence 887 4 368999999999999999999988765433 6799999999999999999999 8865 11 467
Q ss_pred cCCCcEEEEEecCCC-CccchhhhHHHcH-HHHHHh--H-cCCCEEEEeCCCCccHHHHHHHHHH
Q 008731 465 AKGGGFYVAFSRKQP-QKVYVQHKMLEQS-QRIWNL--L-LSKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 465 ~~~~~~~~a~Sr~~~-~k~yVqd~l~~~~-~~l~~~--l-~~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
++++++|+++. .+++|++.+.+.. .....+ + ..++.+|+|||+ .|+++|++.|.+
T Consensus 174 ----~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~ 233 (257)
T 2qdx_A 174 ----IYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSP-SMLEETSAVLDS 233 (257)
T ss_dssp ----EEEEEESSSCCSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEECH-HHHHHHHHHHHH
T ss_pred ----EEEEEecCCCcccCceechhhhhhhHHHhcccccCCcCCCEEEEECCH-HHHHHHHHHHHH
Confidence 78889998753 4689998876532 111111 1 247899999998 999999988865
No 27
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=99.91 E-value=1.6e-24 Score=229.20 Aligned_cols=177 Identities=15% Similarity=0.221 Sum_probs=142.5
Q ss_pred CchhHHHhhcCC-----CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhc-cCCCCCceEEEEeecC
Q 008731 319 MPIDWLVQLVPP-----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG 392 (556)
Q Consensus 319 ~p~~~l~~~lp~-----~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g 392 (556)
.|+|++...+|+ ...|+|||+|+|. .+.++|+|+. ...|.+|+||++ +++ |++|.+.+|.|
T Consensus 184 ~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~G 250 (396)
T 1gvh_A 184 RPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKR---------EEGGQVSNWLHNHANV--GDVVKLVAPAG 250 (396)
T ss_dssp CTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEEC---------CTTCHHHHHHHHTCCT--TCEEEEEEEEC
T ss_pred CCCCeEEEEecCCCCccceeecceeccCCC--CCeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCCc
Confidence 477877666653 3589999999986 4789999842 346999999996 999 99999999999
Q ss_pred CCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEE
Q 008731 393 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY 471 (556)
Q Consensus 393 ~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~ 471 (556)
.|.++ +..+|++|||+|||||||++|++++...+.. .+++|+||+|+.+|++|++||+++.+.++++ +++
T Consensus 251 ~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~ 321 (396)
T 1gvh_A 251 DFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGHT---AQVNWFHAAENGDVHAFADEVKELGQSLPRF------TAH 321 (396)
T ss_dssp SCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHTCC---SCEEEEEEESCTTTCCSHHHHHHHHHTSSSE------EEE
T ss_pred ceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcCCC---CcEEEEEEeCCHHHhhhHHHHHHHHHHCCCe------EEE
Confidence 99998 6789999999999999999999999876544 7899999999999999999999998765778 889
Q ss_pred EEEecCCC---------Cccchhhh-HHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHH
Q 008731 472 VAFSRKQP---------QKVYVQHK-MLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 472 ~a~Sr~~~---------~k~yVqd~-l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
+++|+++. ..+++... +.+. + . ..++.+|+|||+ +|+++|++.|.+
T Consensus 322 ~~~s~~~~~~~~~~~~~~~G~~~~~~l~~~---~--~-~~~~~vyvCGp~-~m~~~v~~~L~~ 377 (396)
T 1gvh_A 322 TWYRQPSEADRAKGQFDSEGLMDLSKLEGA---F--S-DPTMQFYLCGPV-GFMQFTAKQLVD 377 (396)
T ss_dssp EEESSCCHHHHHHTCCSEESSCCGGGSSSC---C--C-CTTCEEEEESCH-HHHHHHHHHHHH
T ss_pred EEECCCCccccccCccCccCcCCHHHHhhc---c--C-CCCCEEEEeCCH-HHHHHHHHHHHH
Confidence 99998653 12344332 2110 0 1 127899999998 999999988764
No 28
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=99.91 E-value=3.1e-24 Score=227.41 Aligned_cols=181 Identities=17% Similarity=0.234 Sum_probs=145.0
Q ss_pred CchhHHHhhc--C--C---CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEee
Q 008731 319 MPIDWLVQLV--P--P---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQ 390 (556)
Q Consensus 319 ~p~~~l~~~l--p--~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~ 390 (556)
.|+|++...+ | . ...|+|||+|+|. ++.++|+|+... . ....+.|.+|+||+ ++++ |++|.+.+|
T Consensus 185 ~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~--~~~~~i~Vk~~~--~-~~~~~~G~~S~~L~~~l~~--Gd~v~v~gP 257 (399)
T 4g1v_A 185 TPGQYITVNTHPIRQENQYDALRHYSLCSAST--KNGLRFAVKMEA--A-RENFPAGLVSEYLHKDAKV--GDEIKLSAP 257 (399)
T ss_dssp CTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC--TTCEEEEEECCC--C-BTTBCCCHHHHHHHHTCCT--TCEEEEEEE
T ss_pred CCCCEEEEEEeCCCCCCccceeeeecccCCCC--CCeEEEEEEecc--C-CCCCCCCEehhHHHhCCCC--CCEEEEEec
Confidence 4778776664 4 3 4689999999985 378999884311 0 01135899999996 8999 999999999
Q ss_pred cCCCCCC-C----CCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCcccc
Q 008731 391 KGSLPRP-P----PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEA 465 (556)
Q Consensus 391 ~g~F~lp-~----~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~ 465 (556)
.|.|.++ + ...|+||||+|||||||++|++++...+.. .+++|+||+|+.+|++|.++|+++.+.++++
T Consensus 258 ~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~--- 331 (399)
T 4g1v_A 258 AGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNPN---RPIYWIQSSYDEKTQAFKKHVDELLAECANV--- 331 (399)
T ss_dssp ECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCTT---SCEEEEEEESSSTTSTTHHHHHHHHTTCSSE---
T ss_pred ccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCCC---CCEEEEEecCCHHHhhhHHHHHHHHHhCCCc---
Confidence 9999998 5 588999999999999999999999887654 7899999999999999999999998776778
Q ss_pred CCCcEEEEEecCCCCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 466 KGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 466 ~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
++++++|+++ ++++. +.+.+.+.+++.+|+|||+ +|+++|++.|.+.
T Consensus 332 ---~~~~~~s~~~---g~~~~------~~l~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~ 378 (399)
T 4g1v_A 332 ---DKIIVHTDTE---PLINA------AFLKEKSPAHADVYTCGSL-AFMQAMIGHLKEL 378 (399)
T ss_dssp ---EEEEEETTTS---CCCCH------HHHHHHSCSSCEEEEEECH-HHHHHHHHHHHHT
T ss_pred ---EEEEEEeCCC---CcccH------HHHHhhCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 8999999864 34432 2223344458999999998 9999999888654
No 29
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.90 E-value=3.3e-24 Score=214.28 Aligned_cols=169 Identities=18% Similarity=0.227 Sum_probs=135.8
Q ss_pred CchhHHHhhcCC---CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCC-C
Q 008731 319 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-L 394 (556)
Q Consensus 319 ~p~~~l~~~lp~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F 394 (556)
.|+|++...+|. ..+|+|||+|+|.. .+.++|+|.. ...|.+|+||+++++ |++|.+.+|.|. |
T Consensus 35 ~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~---------~~~G~~S~~l~~l~~--Gd~v~v~gP~G~~f 102 (262)
T 1ep3_B 35 LPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRI---------GDETTGTYKLSKLES--GAKVDVMGPLGNGF 102 (262)
T ss_dssp STTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEEC---------CCTTSHHHHHHTCCT--TCEEEEEEEESBCC
T ss_pred CCCceEEEEcCCCCceeeEEEEeeeecCC-CCEEEEEEEE---------ecCCchHHHHhcCCC--CCEEEEEcccCCCc
Confidence 477777666664 68999999999853 5789999842 346999999999999 999999999998 9
Q ss_pred CCCC--CCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEE
Q 008731 395 PRPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 472 (556)
Q Consensus 395 ~lp~--~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~ 472 (556)
.++. ...|++|||+|||||||++|++++...+ .+++|+||+|+.+|++|++||+++... ++++
T Consensus 103 ~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~-----~~v~l~~~~r~~~~~~~~~el~~l~~~----------~~~~ 167 (262)
T 1ep3_B 103 PVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG-----CQMTILLGFASENVKILENEFSNLKNV----------TLKI 167 (262)
T ss_dssp CCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT-----CEEEEEEEESSGGGCCCHHHHHTSTTE----------EEEE
T ss_pred cCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC-----CeEEEEEEcCCHHHhhhHHHHhhhccC----------cEEE
Confidence 9883 4789999999999999999999998753 579999999999999999999987532 2233
Q ss_pred EEecCC--CCccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHH
Q 008731 473 AFSRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 473 a~Sr~~--~~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
+ ++++ ..++||++.+.+. +.++..+|+|||+ .|++++++ |.+
T Consensus 168 ~-~~~~~~~~~g~v~~~l~~~-------~~~~~~vyvCGp~-~m~~~v~~-l~~ 211 (262)
T 1ep3_B 168 A-TDDGSYGTKGHVGMLMNEI-------DFEVDALYTCGAP-AMLKAVAK-KYD 211 (262)
T ss_dssp E-ETTCSSSEESCHHHHHHHC-------CSCCSEEEEESCH-HHHHHHHH-HTT
T ss_pred E-ECCCCCcceeehHHHHHhh-------ccCCCEEEEECCH-HHHHHHHH-HHh
Confidence 3 4443 2367888866542 3447899999998 99999888 754
No 30
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=99.90 E-value=1.3e-24 Score=217.77 Aligned_cols=192 Identities=17% Similarity=0.140 Sum_probs=139.5
Q ss_pred CchhHHHhhcC---CCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCC--
Q 008731 319 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-- 393 (556)
Q Consensus 319 ~p~~~l~~~lp---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-- 393 (556)
.|+|++...++ ....|+|||+|++.. ++.++|+|.++.+....+....|.+|+||+++++ |+.|.+.+|.|.
T Consensus 44 ~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~~~~~~~~~~G~~s~~l~~l~~--Gd~v~v~gP~G~~~ 120 (270)
T 2cnd_A 44 PIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPV--GSYIDVKGPLGHVE 120 (270)
T ss_dssp CTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCCSSCBTTBTTCCHHHHHHHHCCT--TCEEEEEEEECSEE
T ss_pred CCCCEEEEEeeeCCcEEEEeeccCCCccC-CCEEEEEEEEeccCcccccCCCCchhhHHhcCCC--CCEEEEECCcccce
Confidence 46776554443 246899999999853 5799999976422111111135999999999999 999999999986
Q ss_pred ------CCCCC---CCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCC-Ccc
Q 008731 394 ------LPRPP---PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFS 463 (556)
Q Consensus 394 ------F~lp~---~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~ 463 (556)
|.++. ...|+||||+|||||||++|++++...... ...+++|+||+|+.+|++|.+||+++.+.++ .+
T Consensus 121 ~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~-~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~- 198 (270)
T 2cnd_A 121 YTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPE-DHTEMHLVYANRTEDDILLRDELDRWAAEYPDRL- 198 (270)
T ss_dssp CCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTT-CCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTE-
T ss_pred eccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCCC-CCcEEEEEEEcCCHHHcchHHHHHHHHHHCcCcE-
Confidence 55552 468999999999999999999999875210 1278999999999999999999999987643 57
Q ss_pred ccCCCcEEEEEecC---CC----CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHH-HHHHHHH
Q 008731 464 EAKGGGFYVAFSRK---QP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSD-VWSTFEE 524 (556)
Q Consensus 464 ~~~~~~~~~a~Sr~---~~----~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~-v~~~L~~ 524 (556)
++++++|++ ++ .++||++.+.+. +......++.+|+|||+ .|+++ +++.|.+
T Consensus 199 -----~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp~-~m~~~~~~~~L~~ 258 (270)
T 2cnd_A 199 -----KVWYVIDQVKRPEEGWKYSVGFVTEAVLRE---HVPEGGDDTLALACGPP-PMIQFAISPNLEK 258 (270)
T ss_dssp -----EEEEEESCCSCGGGCCCSEESSCCHHHHHH---HSCCCSSSEEEEEECCH-HHHHTTTHHHHHT
T ss_pred -----EEEEEECCCCCCCCCcccccccCCHHHHHH---hcCCCcCCEEEEEECCH-HHHHHHHHHHHHH
Confidence 788888873 11 257787754321 11111125689999998 88886 4666653
No 31
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=99.89 E-value=8.5e-24 Score=224.23 Aligned_cols=182 Identities=18% Similarity=0.266 Sum_probs=142.1
Q ss_pred CchhHHHhhcC--C---CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhh-ccCCCCCceEEEEeecC
Q 008731 319 MPIDWLVQLVP--P---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG 392 (556)
Q Consensus 319 ~p~~~l~~~lp--~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g 392 (556)
.|+|++...+| . ...|+|||+|+|. .+.++|+|+.+. ....+.|.+|+||+ ++++ |++|.+.+|.|
T Consensus 186 ~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~~----~~~~~~G~~S~~L~~~l~~--Gd~v~v~gP~G 257 (403)
T 1cqx_A 186 EPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKREG----GGPQPPGYVSNLLHDHVNV--GDQVKLAAPYG 257 (403)
T ss_dssp CTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECCC----BTTBCCCHHHHHHHHHCCT--TCEEEECCCBC
T ss_pred CCCCEEEEEEecCCCCcceeecceecCCCC--CCeEEEEEEECC----CCCCCCCeehHHHhhCCCC--CCEEEEecCcc
Confidence 47787766655 2 3579999999985 478999985431 01123699999998 5999 99999999999
Q ss_pred CCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEE
Q 008731 393 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY 471 (556)
Q Consensus 393 ~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~ 471 (556)
.|.++ +..+|+||||+|||||||++|++++.. +.. .+++|+||+|+.+|++|++||+++.+.++++ +++
T Consensus 258 ~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~ 327 (403)
T 1cqx_A 258 SFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-APP---RQVVFVHGARNSAVHAMRDRLREAAKTYENL------DLF 327 (403)
T ss_dssp SCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-SSC---CCEEEEEEESCSSSCHHHHHHHHHHHHCTTE------EEE
T ss_pred CcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-CCC---CcEEEEEEeCChhhCcHHHHHHHHHHhCCCc------EEE
Confidence 99997 678899999999999999999999876 333 7899999999999999999999998765778 889
Q ss_pred EEEecCCCC---------ccchhhhHHHcHHHHHHh-HcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 472 VAFSRKQPQ---------KVYVQHKMLEQSQRIWNL-LLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 472 ~a~Sr~~~~---------k~yVqd~l~~~~~~l~~~-l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
+++|+++.. .+++.... +.+. ...++.+|+|||+ +|+++|++.|.+.
T Consensus 328 ~~~s~~~~~~~~~~~~~~~G~i~~~~------l~~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~ 384 (403)
T 1cqx_A 328 VFYDQPLPEDVQGRDYDYPGLVDVKQ------IEKSILLPDADYYICGPI-PFMRMQHDALKNL 384 (403)
T ss_dssp EEESSCCTTCCBTTTBSEESSCCGGG------SHHHHCCTTCEEEEESSH-HHHHHHHHHHHHT
T ss_pred EEECCCCcccccccccCcCCCcCHHH------HhhccCCCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence 999986542 23443211 1111 1237899999998 8999998887653
No 32
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.88 E-value=2.3e-23 Score=214.31 Aligned_cols=172 Identities=13% Similarity=0.200 Sum_probs=138.7
Q ss_pred CchhHHHhhcCCCCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCc-cchhhh-ccCCCCCceEEEEeecCCCCC
Q 008731 319 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGL-CSVWLA-GLDPQQGIYIPAWFQKGSLPR 396 (556)
Q Consensus 319 ~p~~~l~~~lp~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~-~S~~L~-~l~~~~G~~v~v~~~~g~F~l 396 (556)
.|+|++...+|....|+|||+|+|.. .+.++|+|. +...|. +|+||+ ++++ |+.|.+.+|.|.|.+
T Consensus 40 ~pGQ~v~l~~~~g~~R~ySi~s~~~~-~~~l~i~Vk---------~~~~G~g~S~~L~~~l~~--Gd~v~v~gP~g~f~l 107 (321)
T 2pia_A 40 EAGANLTVAVPNGSRRTYSLCNDSQE-RNRYVIAVK---------RDSNGRGGSISFIDDTSE--GDAVEVSLPRNEFPL 107 (321)
T ss_dssp CTTCEEEEECTTSCEEEEECCSCTTC-CSEEEEEEE---------CCTTSCSHHHHHHHSCCT--TCEEEECCCBCCSCC
T ss_pred CCCCEEEEECCCCCcEEEEeCCCCCC-CCeEEEEEE---------EecCCcchhHHHHhcCCC--CCEEEEeCCcccccc
Confidence 47888777777778999999999853 478999984 345688 899999 8999 999999999999999
Q ss_pred CCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEec
Q 008731 397 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 476 (556)
Q Consensus 397 p~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 476 (556)
+....+++|||+|||||||++|+++....+. .+++|+||+|+.+|++|.+||+++... . ++.+.+++
T Consensus 108 ~~~~~~~vliagG~GItP~~s~l~~l~~~~~----~~v~l~~~~r~~~~~~~~~el~~l~~~-~--------~~~~~~~~ 174 (321)
T 2pia_A 108 DKRAKSFILVAGGIGITPMLSMARQLRAEGL----RSFRLYYLTRDPEGTAFFDELTSDEWR-S--------DVKIHHDH 174 (321)
T ss_dssp CTTCSEEEEEEEGGGHHHHHHHHHHHHHHCS----SEEEEEEEESCGGGCTTHHHHHSTTTT-T--------TEEEEECT
T ss_pred CCCCCCEEEEEecccHhHHHHHHHHHHHcCC----CcEEEEEEECChhhhHHHHHHhcCccC-C--------eEEEEECC
Confidence 8447899999999999999999999987641 579999999999999999999998632 3 34555666
Q ss_pred CCC-CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHH
Q 008731 477 KQP-QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 477 ~~~-~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
++. .+.++++++.. ...+..+|+|||+ .|+++|++.|.+
T Consensus 175 ~~~~g~~~~~~ll~~--------~~~~~~vyvCGP~-~m~~~v~~~l~~ 214 (321)
T 2pia_A 175 GDPTKAFDFWSVFEK--------SKPAQHVYCCGPQ-ALMDTVRDMTGH 214 (321)
T ss_dssp TCTTSCCCHHHHHSS--------CCTTEEEEEESCH-HHHHHHHHHTTT
T ss_pred CcccCccCHHHHhcc--------cCCCCEEEEECCH-HHHHHHHHHHHh
Confidence 532 34455554432 1347899999998 999999988876
No 33
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.75 E-value=4.4e-19 Score=176.11 Aligned_cols=166 Identities=11% Similarity=0.049 Sum_probs=119.9
Q ss_pred CchhHHHhhcCC----CCccccccCCCCCCCCCEEEEEEEEEEeeCCCCCCccCccchhhhccCCCCCceEEEEeecCCC
Q 008731 319 MPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 394 (556)
Q Consensus 319 ~p~~~l~~~lp~----~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F 394 (556)
.|+|++...+|. ...|+|||+|.+. ++++|.|.++ ...|.+|+||+++++ ||+|.+.+|.|.|
T Consensus 40 ~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~--------~~~G~~S~~l~~l~~--Gd~l~v~gP~G~f 106 (252)
T 2gpj_A 40 QESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLH--------DTDGPASSWAKTAQV--GELIQIGGPGLKK 106 (252)
T ss_dssp CTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECC--------SSCCHHHHHHHHCCT--TCEEEEEEEECCC
T ss_pred CCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEe--------CCCCcHHHHHhhCCC--CCEEEEecCCCCC
Confidence 578887776764 4679999999764 6777776421 123899999999999 9999999999999
Q ss_pred CCCCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEE
Q 008731 395 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 474 (556)
Q Consensus 395 ~lp~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 474 (556)
.++....+++|||+||||||+++|+++... . .++.+++++|+.+|..+ | ... ..+ +++.++
T Consensus 107 ~l~~~~~~~lliagGtGitPi~s~l~~l~~---~---~~~~~~~~~~~~~d~~~---l---~~~-~~~------~v~~~~ 167 (252)
T 2gpj_A 107 LINFEADWFLLAGDMTALPAISVNLAKLPN---N---AVGYAVIEVLSEADIQP---L---VHP-EHV------ELHWVI 167 (252)
T ss_dssp CCCSSSSEEEEEEEGGGHHHHHHHHHHSCT---T---CEEEEEEEESSGGGCCC---C---CCC-TEE------EEEEEE
T ss_pred cCCCCCceEEEEcchhhHHHHHHHHHhCCC---C---CcEEEEEEECCHHHhhc---c---cCC-CCc------EEEEEe
Confidence 987445799999999999999999998743 1 46789999999876543 1 111 345 666666
Q ss_pred ecCCCC-ccchhhhHHHcHHHHHHhHc-CCCEEEEeCCCCccHHHHHHHHH
Q 008731 475 SRKQPQ-KVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFE 523 (556)
Q Consensus 475 Sr~~~~-k~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~m~~~v~~~L~ 523 (556)
+.+... ...+.+.+.+. .+. .+.++|+|||+ +|++++++.|.
T Consensus 168 ~~~~~~~g~~~~~~l~~~------~~~~~~~~vy~CGP~-~m~~av~~~l~ 211 (252)
T 2gpj_A 168 NPEADPEGRPLVERIAQL------PWLAGEPAVWIACEF-NSMRALRRHFK 211 (252)
T ss_dssp CSSCCTTCHHHHHHHTTS------CCCSSCEEEEEEEEH-HHHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHhc------cCCCCCcEEEEEcCH-HHHHHHHHHHH
Confidence 554321 12233332211 011 26689999998 99999998887
No 34
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.70 E-value=8.1e-18 Score=155.09 Aligned_cols=126 Identities=10% Similarity=0.001 Sum_probs=84.4
Q ss_pred cCCCCCce-EEEEeecCCCCCCCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHh
Q 008731 377 LDPQQGIY-IPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSH 455 (556)
Q Consensus 377 l~~~~G~~-v~v~~~~g~F~lp~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~ 455 (556)
|++ ||+ +.+.+|.|+|...+..+|++|||+||||||+++++++....+ .+++|+ |+|+.+|.+|++||+++
T Consensus 1 L~~--Gd~vl~v~gP~G~~f~~~~~~~~llIaGG~GItPl~sm~~~l~~~~-----~~v~l~-g~r~~~d~~~~~el~~l 72 (158)
T 3lrx_A 1 MKE--GDSLLNVAGPLGTPVPMEKFGKILAIGAYTGIVEVYPIAKAWQEIG-----NDVTTL-HVTFEPMVILKEELEKA 72 (158)
T ss_dssp -------------CCCCCCBCCCCCSEEEEEEETTHHHHHHHHHHHHHHHT-----CEEEEE-EECBGGGCCSHHHHHHH
T ss_pred CcC--CCEeeEEECCCCCCCccCCCCeEEEEEccCcHHHHHHHHHHHHhcC-----CcEEEE-EeCCHHHhhHHHHHHHH
Confidence 467 999 599999998654445689999999999999999999987653 469999 99999999999999998
Q ss_pred HhcCCCccccCCCcEEEEEecCCC--------CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 456 SLNDGVFSEAKGGGFYVAFSRKQP--------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 456 ~~~~g~l~~~~~~~~~~a~Sr~~~--------~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
..+ + .+..++++... .+++|++.+.+... . .+...||+|||+ +|.+++.+.+.+.
T Consensus 73 ~~~---~------~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~l~----~-~~~~~vy~CGP~-~mm~~v~~~l~~~ 135 (158)
T 3lrx_A 73 VTR---H------IVEPVPLNPNQDFLANMKNVSQRLKEKVRELLE----S-EDWDLVFMVGPV-GDQKQVFEVVKEY 135 (158)
T ss_dssp SSE---E------EECCBCCCTTSCHHHHHHHHHHHHHHHHHHHHH----H-SCCSEEEEESCH-HHHHHHHHHHGGG
T ss_pred Hhc---e------EEEEeeccccccCCCCCCCCcccccHHHHHhhc----c-CCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 643 3 33323333211 24566654433211 1 146789999998 9999998877654
No 35
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.64 E-value=1.9e-16 Score=143.19 Aligned_cols=120 Identities=10% Similarity=-0.007 Sum_probs=85.2
Q ss_pred EEEEeecCCCCCCCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccc
Q 008731 385 IPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSE 464 (556)
Q Consensus 385 v~v~~~~g~F~lp~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~ 464 (556)
+.+.+|.|+|...+..++++|||+|+||||+++++++....+ .++.|+ |+|+++|++|++||+++..+ +
T Consensus 3 ~~v~GP~G~~~~~~~~~~~llIaGG~GiaPl~sm~~~l~~~~-----~~v~l~-g~R~~~~~~~~~el~~l~~~---~-- 71 (142)
T 3lyu_A 3 LNVAGPLGTPVPMEKFGKILAIGAYTGIVEVYPIAKAWQEIG-----NDVTTL-HVTFEPMVILKEELEKAVTR---H-- 71 (142)
T ss_dssp ----CCCSCCBCCCCCSEEEEEEETTHHHHHHHHHHHHHHTT-----CEEEEE-EEEEGGGCCSHHHHHTTSSE---E--
T ss_pred eeeeCCCCCCccCCCCCeEEEEECcCcHHHHHHHHHHHHhcC-----CcEEEE-EeCCHHHhhHHHHHHHHHhh---e--
Confidence 467889998766544689999999999999999999987643 468999 99999999999999998643 3
Q ss_pred cCCCcEEEEEecCCC--------CccchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHHH
Q 008731 465 AKGGGFYVAFSRKQP--------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 525 (556)
Q Consensus 465 ~~~~~~~~a~Sr~~~--------~k~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~i 525 (556)
.+..++++... .+++|.+.+.+. ... .+...||+|||+ +|.++|.+.+.+.
T Consensus 72 ----~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~----~~~-~~~~~vy~CGP~-~Mm~av~~~l~~~ 130 (142)
T 3lyu_A 72 ----IVEPVPLNPNQDFLANMKNVSQRLKEKVREL----LES-EDWDLVFMVGPV-GDQKQVFEVVKEY 130 (142)
T ss_dssp ----EEEEECCCTTSCHHHHHHHHHHHHHHHHHHH----HHS-SCCSEEEEESCH-HHHHHHHHHHHHH
T ss_pred ----EEEEeecccccCCCCCCCCCccchhHHHHHh----ccc-CCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 34444444321 135555544322 111 135689999998 9999998887764
No 36
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.63 E-value=6.4e-17 Score=152.03 Aligned_cols=133 Identities=14% Similarity=0.225 Sum_probs=91.6
Q ss_pred EEeecCCCCCC-CCCCCeEEEcCCCCchhhHHHHHHHHHhhC----CCCCCCEEEEEcccCCCccc-cHHHHHHhHhcC-
Q 008731 387 AWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS----SGPAAPIIFFFGCRNEDDFL-YRELWLSHSLND- 459 (556)
Q Consensus 387 v~~~~g~F~lp-~~~~piimIa~GTGIAPf~s~lq~~~~~~~----~~~~~~~~L~~G~R~~~d~l-y~~el~~~~~~~- 459 (556)
+.+|.|.|.++ ....++||||+|||||||++|++++..... .....+++|+||+|+.++++ |+++|+++.+.+
T Consensus 3 v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~~~~ 82 (186)
T 3a1f_A 3 VDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQMQ 82 (186)
T ss_dssp TTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHHHHH
T ss_pred EECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHHHHh
Confidence 45688887765 567899999999999999999999887531 00237899999999999988 999999997642
Q ss_pred -----CCccccCCCcEEEEEecCCC---Cccchhh-----hHH----------HcHHH----HHHhHc-CCCEEEEeCCC
Q 008731 460 -----GVFSEAKGGGFYVAFSRKQP---QKVYVQH-----KML----------EQSQR----IWNLLL-SKASIYVAGSA 511 (556)
Q Consensus 460 -----g~l~~~~~~~~~~a~Sr~~~---~k~yVqd-----~l~----------~~~~~----l~~~l~-~~~~iyvCG~~ 511 (556)
+++ ++++++|++.. .+.|++. .+. -+.+. +.+... .+..||+|||+
T Consensus 83 ~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP~ 156 (186)
T 3a1f_A 83 ERNNAGFL------SYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGPE 156 (186)
T ss_dssp HTTCTTSE------EEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESCH
T ss_pred hccCCCeE------EEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCCH
Confidence 467 78889998532 1122221 000 01111 211122 36789999998
Q ss_pred CccHHHHHHHHHHHH
Q 008731 512 TKMPSDVWSTFEEIV 526 (556)
Q Consensus 512 ~~m~~~v~~~L~~i~ 526 (556)
+|.++|++++.+..
T Consensus 157 -~m~~~v~~~l~~~g 170 (186)
T 3a1f_A 157 -ALAETLSKQSISNS 170 (186)
T ss_dssp -HHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHHHHhh
Confidence 99999998887754
No 37
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=99.63 E-value=3.2e-16 Score=151.06 Aligned_cols=85 Identities=29% Similarity=0.466 Sum_probs=78.0
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
|+.||++|.... ..|+|++||||||||++|++||.+++.++++|+++||++++|++++|+.. +.+++|+.|.+++
T Consensus 106 a~~F~~~L~~~~---~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~g~~D~~~--~~e~~~~~W~~~l 180 (219)
T 3hr4_A 106 GEKLKKSLFMLK---ELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELS--GQEDAFRSWAVQT 180 (219)
T ss_dssp GHHHHHHHHHCC---CCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEETTS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc---hhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCCEEEecCC--CcHHHHHHHHHHH
Confidence 468999998753 23899999999999999999999999999999999999999999999974 4899999999999
Q ss_pred HHHHhhhCCC
Q 008731 81 WRRLHQIDPS 90 (556)
Q Consensus 81 ~~~l~~~~~~ 90 (556)
|++|++.++.
T Consensus 181 ~~~l~~~~~~ 190 (219)
T 3hr4_A 181 FKAACETFDV 190 (219)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999999984
No 38
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.34 E-value=1.5e-12 Score=123.45 Aligned_cols=81 Identities=32% Similarity=0.641 Sum_probs=71.0
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCc-hHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRS 79 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y-~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~ 79 (556)
++.|+++|.... ...|+|++|||||+||++| ++||.+++.++++|+++||+++.+.+++|.. .+.+.+++.|.++
T Consensus 86 ~~~fl~~L~~~~--~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~~d~~--~d~e~~~~~w~~~ 161 (191)
T 1bvy_F 86 AKQFVDWLDQAS--ADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADAS--DDFEGTYEEWREH 161 (191)
T ss_dssp THHHHHHHHTCC--SSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETT--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--chhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEEEecC--CChHHHHHHHHHH
Confidence 578999997653 2348999999999999999 5999999999999999999999999999883 3477779999999
Q ss_pred HHHHHh
Q 008731 80 LWRRLH 85 (556)
Q Consensus 80 ~~~~l~ 85 (556)
+|++|.
T Consensus 162 l~~~l~ 167 (191)
T 1bvy_F 162 MWSDVA 167 (191)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999996
No 39
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.14 E-value=7.2e-12 Score=113.44 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=72.2
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
+++|+++|.... + .|++++|||||+||++|+.||.+++.++++|+++||+++.+.+.+|...+.+.++.++.|.+++
T Consensus 66 ~~~f~~~l~~~~-~--~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~d~~~~~~~~~~~~~w~~~~ 142 (147)
T 2hna_A 66 LSPFYEALQEQK-P--DLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSW 142 (147)
T ss_dssp CHHHHHHHHHHC-C--CTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSSCBCCCCSSCCSSCSCCHHHHHHH
T ss_pred HHHHHHHHHhhc-c--ccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeeeeEEEecCCCCCcHHHHHHHHHHH
Confidence 478999997642 1 3889999999999999999999999999999999999999999999887666888999999999
Q ss_pred HHHH
Q 008731 81 WRRL 84 (556)
Q Consensus 81 ~~~l 84 (556)
++.|
T Consensus 143 ~~~l 146 (147)
T 2hna_A 143 VNLL 146 (147)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9876
No 40
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.13 E-value=9.5e-11 Score=108.49 Aligned_cols=83 Identities=30% Similarity=0.527 Sum_probs=71.1
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
++.|+++|.....+ .|++++|+|||+||++|.+||.+++.++++|+++|++++.+.+.+|. +.++.++.|.+++
T Consensus 76 ~~~f~~~l~~~~~~--~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~~~d~----~~~~~~~~w~~~l 149 (167)
T 1ykg_A 76 AVALHKFLFSKKAP--KLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADV----EYQAAASEWRARV 149 (167)
T ss_dssp GHHHHHHHTSTTCC--CCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEEECT----TCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc--ccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecceecCC----CcHHHHHHHHHHH
Confidence 46799998753222 38999999999999999999999999999999999999999988883 2678999999999
Q ss_pred HHHHhhhCC
Q 008731 81 WRRLHQIDP 89 (556)
Q Consensus 81 ~~~l~~~~~ 89 (556)
++.|.+.++
T Consensus 150 ~~~l~~~~~ 158 (167)
T 1ykg_A 150 VDALKSRAP 158 (167)
T ss_dssp HHHHHTCC-
T ss_pred HHHHHhhcC
Confidence 999977655
No 41
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=98.85 E-value=1.1e-09 Score=98.91 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHH
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 81 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~ 81 (556)
+.|+++|.... ++|++|+|||+||++|..||.+++.++++|+++|++++.+...++...++ ....++.|.+++.
T Consensus 72 ~~fl~~l~~~~-----l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~-~~~~~~~~~~~l~ 145 (148)
T 3f6r_A 72 LSLFEEFDRIG-----LAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLKMEGDASN-DPEAVASFAEDVL 145 (148)
T ss_dssp HHHHTTGGGTC-----CTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEEEESSGGG-CHHHHHHHHHHHH
T ss_pred HHHHHHhhccC-----CCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceEeecCcch-HHHHHHHHHHHHH
Confidence 56777775433 89999999999999999999999999999999999999888888776544 6677888888776
Q ss_pred H
Q 008731 82 R 82 (556)
Q Consensus 82 ~ 82 (556)
+
T Consensus 146 ~ 146 (148)
T 3f6r_A 146 K 146 (148)
T ss_dssp H
T ss_pred h
Confidence 5
No 42
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=98.61 E-value=2.9e-08 Score=89.27 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=63.1
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
++.|+++|.... +++++++|||+||++|..||.+.+.+++.|+.+|++.+.+...+|...+. ..+.+..|.+++
T Consensus 70 ~~~fl~~l~~~~-----l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~p~~-~~~~~~~~~~~l 143 (147)
T 1f4p_A 70 FIPLFDSLEETG-----AQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRA-ARDDIVGWAHDV 143 (147)
T ss_dssp THHHHHTGGGSC-----CTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEESCGGG-GHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-----cCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccccccCchh-HHHHHHHHHHHH
Confidence 467888886543 88999999999999998899999999999999999999887777765332 556788998887
Q ss_pred HH
Q 008731 81 WR 82 (556)
Q Consensus 81 ~~ 82 (556)
++
T Consensus 144 ~~ 145 (147)
T 1f4p_A 144 RG 145 (147)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 43
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=98.49 E-value=8.6e-08 Score=89.61 Aligned_cols=82 Identities=26% Similarity=0.344 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEEEecCCC-ch-HHHHHHHHHHHHHHhcCCeEeecc-------------------ccc
Q 008731 3 VFWRFLLQKSLSKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GLG 61 (556)
Q Consensus 3 ~F~~~l~~~~~~~~~l~~~~~avfGlGds~-Y~-~fc~~~~~l~~~l~~lGa~~~~~~-------------------~~~ 61 (556)
.|+++|... .|+|++|+|||+||++ |. +||.+.+.++++|.++||+.+.+. +.+
T Consensus 77 ~f~~~l~~~-----~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~~~gl~ 151 (182)
T 2wc1_A 77 EFLPRIADQ-----DFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGEFLGLA 151 (182)
T ss_dssp HHGGGGTTC-----CCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTEESSEE
T ss_pred HHHHHhhhc-----cCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCceeeee
Confidence 466555432 3899999999999998 96 899999999999999999988753 443
Q ss_pred -cCCCC-CCchhhHHHHHHHHHHHHhhhCC
Q 008731 62 -DDQHP-SGYEGALDPWMRSLWRRLHQIDP 89 (556)
Q Consensus 62 -D~~~~-~~~~~~~~~W~~~~~~~l~~~~~ 89 (556)
|..++ +..++.++.|.+++++.|....+
T Consensus 152 ~d~~~~~~~~~~~~~~w~~~l~~~l~~~~~ 181 (182)
T 2wc1_A 152 LDQDNQAALTPERLKGWLSLIAADFGLVLP 181 (182)
T ss_dssp ECTTTCGGGHHHHHHHHHHHTHHHHTCCCC
T ss_pred ccCCCCccccHHHHHHHHHHHHHHHhcccC
Confidence 32222 22577899999999999866543
No 44
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=98.41 E-value=2.6e-07 Score=86.10 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCC-ch-HHHHHHHHHHHHHHhcCCeEeecc-------------------cc
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL 60 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~-Y~-~fc~~~~~l~~~l~~lGa~~~~~~-------------------~~ 60 (556)
+.|+++|.... |+|++||+||+||+. |. +||.+.+.++++|.++||+.+.+. +.
T Consensus 75 ~~fl~~l~~~~-----l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f~gl 149 (179)
T 1yob_A 75 EEFLPKIEGLD-----FSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGL 149 (179)
T ss_dssp HHHHHHHTTCC-----CTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSBSSE
T ss_pred HHHHHHhhhcc-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCCCcccchhhhcCceecc
Confidence 46777775433 899999999999998 96 799999999999999999988653 22
Q ss_pred -ccCCC-CCCchhhHHHHHHHHHHHHh
Q 008731 61 -GDDQH-PSGYEGALDPWMRSLWRRLH 85 (556)
Q Consensus 61 -~D~~~-~~~~~~~~~~W~~~~~~~l~ 85 (556)
.|..+ ++..++.++.|.+++++.+.
T Consensus 150 ~~d~~~~~~~~~~~i~~w~~~l~~~~~ 176 (179)
T 1yob_A 150 ALDLDNQSGKTDERVAAWLAQIAPEFG 176 (179)
T ss_dssp EECTTTCGGGHHHHHHHHHHHHGGGGT
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHh
Confidence 34321 23467889999999877653
No 45
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=98.36 E-value=5.1e-07 Score=83.63 Aligned_cols=78 Identities=23% Similarity=0.349 Sum_probs=59.0
Q ss_pred HHHH-HHHHhcCCCCCCCCCceEEEEEecCCC-ch-HHHHHHHHHHHHHHhcCCeEeecc-------------------c
Q 008731 2 KVFW-RFLLQKSLSKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------G 59 (556)
Q Consensus 2 ~~F~-~~l~~~~~~~~~l~~~~~avfGlGds~-Y~-~fc~~~~~l~~~l~~lGa~~~~~~-------------------~ 59 (556)
++|+ +.|.... |+|++|+|||+||+. |. +||.+++.++++|+++||+.+.+. +
T Consensus 70 ~~fl~~~l~~~~-----l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~ 144 (173)
T 2fcr_A 70 DEFLYDKLPEVD-----MKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLG 144 (173)
T ss_dssp HHHHHHTGGGCC-----CTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESS
T ss_pred HHHHHhhccccc-----cCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCcccccchhhhCCeeee
Confidence 4566 6554433 899999999999999 85 899999999999999999988652 1
Q ss_pred c-ccCC-CCCCchhhHHHHHHHHHHHH
Q 008731 60 L-GDDQ-HPSGYEGALDPWMRSLWRRL 84 (556)
Q Consensus 60 ~-~D~~-~~~~~~~~~~~W~~~~~~~l 84 (556)
. .|.. .++..++.++.|.+++.+.|
T Consensus 145 l~~~~~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 145 LPLDMVNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp EEEETTTCSSCHHHHHHHHHHHHHHHH
T ss_pred eeecCCCCccccHHHHHHHHHHHHHHh
Confidence 1 1221 22336678999999998766
No 46
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=98.21 E-value=1.3e-06 Score=80.96 Aligned_cols=80 Identities=25% Similarity=0.382 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCC-c-hHHHHHHHHHHHHHHhcCCeEeecc--------------------c
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSG-Y-QKFNFVAKKLDNRLLDLGATAVVER--------------------G 59 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~-Y-~~fc~~~~~l~~~l~~lGa~~~~~~--------------------~ 59 (556)
++|+++|.... |+|++++|||+||+. | ++||.+.+.+++.|+++||+.+... +
T Consensus 66 ~~f~~~l~~~~-----l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~~~~~~g 140 (175)
T 1ag9_A 66 DDFFPTLEEID-----FNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVG 140 (175)
T ss_dssp HHHHHHHTTCC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESS
T ss_pred HHHHhhhhhcc-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchheeeCCeEEe
Confidence 56888886433 899999999999986 8 4899999999999999999987541 1
Q ss_pred c-ccCCCC-CCchhhHHHHHHHHHHHHhh
Q 008731 60 L-GDDQHP-SGYEGALDPWMRSLWRRLHQ 86 (556)
Q Consensus 60 ~-~D~~~~-~~~~~~~~~W~~~~~~~l~~ 86 (556)
. .|..++ +..++.++.|.+++++.+..
T Consensus 141 l~~~~~~~~~~~~~~i~~w~~~i~~~~~~ 169 (175)
T 1ag9_A 141 LAIDEDRQPELTAERVEKWVKQISEELHL 169 (175)
T ss_dssp EEECTTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred eecCCCCcccccHHHHHHHHHHHHHHhhh
Confidence 1 222111 12456788999999988754
No 47
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=98.10 E-value=3.4e-06 Score=77.44 Aligned_cols=78 Identities=23% Similarity=0.366 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCC-Cch-HHHHHHHHHHHHHHhcCCeEeecc-------------------cc
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDS-GYQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL 60 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds-~Y~-~fc~~~~~l~~~l~~lGa~~~~~~-------------------~~ 60 (556)
++|+++|... .|+|+++++||+|++ .|. +||.+.+.+++.|.++|++.+.+. +.
T Consensus 67 ~~fl~~l~~~-----~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~~l 141 (169)
T 1obo_A 67 EGLYSELDDV-----DFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGL 141 (169)
T ss_dssp HHHHTTGGGC-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSE
T ss_pred HHHHHHhhhc-----CcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhhcCCceeeE
Confidence 4577766543 389999999999998 598 799999999999999999987541 11
Q ss_pred -ccCC-CCCCchhhHHHHHHHHHHHH
Q 008731 61 -GDDQ-HPSGYEGALDPWMRSLWRRL 84 (556)
Q Consensus 61 -~D~~-~~~~~~~~~~~W~~~~~~~l 84 (556)
.|.. .++..++.++.|.+++++.|
T Consensus 142 ~~~~~~~~~~~~~~~~~w~~~~~~~l 167 (169)
T 1obo_A 142 ALDEDNQSDLTDDRIKSWVAQLKSEF 167 (169)
T ss_dssp EECTTTCGGGHHHHHHHHHHHHHHHH
T ss_pred EeeCCCccccCHHHHHHHHHHHHHHh
Confidence 1221 12335677899999998877
No 48
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=98.01 E-value=4.9e-06 Score=76.37 Aligned_cols=78 Identities=24% Similarity=0.419 Sum_probs=59.0
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCC-ch-HHHHHHHHHHHHHHhcCCeEeecc-------------------cc
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL 60 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~-Y~-~fc~~~~~l~~~l~~lGa~~~~~~-------------------~~ 60 (556)
++|+++|.... |+|+++++||+||+. |. .||.+.+.+++.|.++||+.+... +.
T Consensus 67 ~~f~~~l~~~~-----l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~gl 141 (169)
T 1czn_A 67 EGIYDDLDSVN-----FQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGL 141 (169)
T ss_dssp HHHGGGGGGSC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSE
T ss_pred HHHHHHhhhhc-----cCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchheeCCeeeee
Confidence 46777775433 899999999999995 97 799999999999999999987521 11
Q ss_pred -ccCCC-CCCchhhHHHHHHHHHHHH
Q 008731 61 -GDDQH-PSGYEGALDPWMRSLWRRL 84 (556)
Q Consensus 61 -~D~~~-~~~~~~~~~~W~~~~~~~l 84 (556)
.|... +...++.++.|.+++++.|
T Consensus 142 ~~~~~~~~~~~~~~~~~w~~~~~~~~ 167 (169)
T 1czn_A 142 AIDEDNQPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp EECTTTCGGGHHHHHHHHHHHHHHHT
T ss_pred eecCCCccccCHHHHHHHHHHHHHHh
Confidence 23221 2235678999999998765
No 49
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=97.98 E-value=9.7e-07 Score=80.87 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCC-ch-HHHHHHHHHHHHHHhcCCeEeecc-------------------cc
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL 60 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~-Y~-~fc~~~~~l~~~l~~lGa~~~~~~-------------------~~ 60 (556)
+.|+++|... .|++++|||||+||+. |. +||.+++.++++|++ |+.+.+. +.
T Consensus 65 ~~f~~~l~~~-----~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~~~~~~~~~~l 137 (164)
T 2bmv_A 65 EDFLGTLEAS-----DFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASKAVEGGKFVGL 137 (164)
T ss_dssp HHHHTTCCTH-----HHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCTTEETTEESSE
T ss_pred HHHHHHHhhh-----hcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchhhhhcCcccCc
Confidence 3455554322 3789999999999995 98 799999999999998 7777652 22
Q ss_pred -ccCCCC-CCchhhHHHHHHHHHHH
Q 008731 61 -GDDQHP-SGYEGALDPWMRSLWRR 83 (556)
Q Consensus 61 -~D~~~~-~~~~~~~~~W~~~~~~~ 83 (556)
.|...+ +..++.++.|.+++++.
T Consensus 138 ~~~~~~~~~~~~~~~~~w~~~l~~~ 162 (164)
T 2bmv_A 138 VIDEDNQDDLTDERISKWVEQVKGS 162 (164)
T ss_dssp EECTTTCGGGHHHHHHHHHHHHTTT
T ss_pred cCCCCCccccCHHHHHHHHHHHHHh
Confidence 232221 12467888999888653
No 50
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=97.57 E-value=2.6e-05 Score=67.36 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=40.6
Q ss_pred CCCceEEEEEecCCCch-HHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHH
Q 008731 18 LEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 81 (556)
Q Consensus 18 l~~~~~avfGlGds~Y~-~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~ 81 (556)
+++++|+|||+||++|. +||.+++.++++|.. ...... +...++...+.++.|.++++
T Consensus 59 ~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~~---~~~~~~---~~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 59 NNEKLKGVSASGNRNWGDMFGASADKISAKYEV---PIVSKF---ELSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CEEEEE---ETTCCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhCC---ccEEEE---ecCCCHHHHHHHHHHHHHhc
Confidence 56789999999999998 599999999999754 222221 22221123456788988775
No 51
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=97.50 E-value=0.00014 Score=64.05 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
++|+++|... |+|+++++||+++..| |.+.+.++++|+++|++.+.+...++...+... +.+..|.+++
T Consensus 67 ~~fl~~l~~~------l~~k~~~~f~t~g~~~---~~a~~~l~~~l~~~G~~~v~~~~~~~~~p~~~d-~~~~~~~~~l 135 (138)
T 5nul_A 67 EPFIEEISTK------ISGKKVALFGSYGWGD---GKWMRDFEERMNGYGCVVVETPLIVQNEPDEAE-QDCIEFGKKI 135 (138)
T ss_dssp HHHHHHHGGG------CTTCEEEEEEEESSSC---SHHHHHHHHHHHHTTCEECSCCEEEESSCGGGH-HHHHHHHHHH
T ss_pred HHHHHHHHhh------cCCCEEEEEEecCCCC---ChHHHHHHHHHHHCCCEEECCceEEecCCCHHH-HHHHHHHHHH
Confidence 5788887542 7899999999988764 889999999999999999987777666554334 5566666554
No 52
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=96.98 E-value=0.00046 Score=61.33 Aligned_cols=59 Identities=8% Similarity=0.021 Sum_probs=40.9
Q ss_pred CCceEEEEEecCCCc-hHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHHHH
Q 008731 19 EGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRR 83 (556)
Q Consensus 19 ~~~~~avfGlGds~Y-~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~~~ 83 (556)
.+..|||+|+||++| +.||.+++.+++++ |...+. ..+.+ ......+.+..|++++|..
T Consensus 71 ~~~~~~V~g~Gd~~yg~~f~~a~~~i~~~~---~~~~~~-~~el~--g~~~D~~~~~~~~~~~~~~ 130 (139)
T 1rlj_A 71 AHLLLGVAASGNKVWGDNFAKSADTISRQY---QVPILH-KFELS--GTSKDVELFTQEVERVVTK 130 (139)
T ss_dssp GGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEEE-EEETT--CCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHHHHc---CCCCcc-eEEEc--CCHHHHHHHHHHHHHHHHH
Confidence 347899999999999 58999999998776 443322 22222 1112346688999988863
No 53
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=96.76 E-value=0.0013 Score=59.70 Aligned_cols=76 Identities=12% Similarity=-0.015 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHH
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 81 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~ 81 (556)
++|++.|.... ++|+++++||.++ .+|.+.+.+.++|+++|++.+.+...+....+....+.+..|.+.+.
T Consensus 74 ~~~l~~l~~~~-----~~~k~va~fgs~g----~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la 144 (159)
T 3fni_A 74 QGALSTILGSV-----NEKQAVGIFETGG----GDDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTYKLCEEAGTDLG 144 (159)
T ss_dssp HHHHHHHHHHC-----CTTSEEEEECCSS----SCBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhc-----ccCCEEEEEEcCC----CCcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHHHHHHHHHHHHH
Confidence 46888887654 7899999999754 46788999999999999999987777666654445566778888887
Q ss_pred HHHhh
Q 008731 82 RRLHQ 86 (556)
Q Consensus 82 ~~l~~ 86 (556)
+.+..
T Consensus 145 ~~~~~ 149 (159)
T 3fni_A 145 QWVTR 149 (159)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 54
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=96.67 E-value=0.00059 Score=61.19 Aligned_cols=58 Identities=5% Similarity=0.056 Sum_probs=40.7
Q ss_pred CCceEEEEEecCCCc-hHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHHH
Q 008731 19 EGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR 82 (556)
Q Consensus 19 ~~~~~avfGlGds~Y-~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~~ 82 (556)
.+.-++|+|.||++| ++||.|++.+.+++.. ..+ .+.+-..+....+.+..|++++|+
T Consensus 92 ~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~~v---P~l---~kfEL~Gt~eDv~~v~~~~~~~~~ 150 (153)
T 3n3a_C 92 RALLRGVIASGNRNFGEAYGRAGDVIARKCGV---PWL---YRFELMGTQSDIENVRKGVTEFWQ 150 (153)
T ss_dssp HHHEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CEE---EEEETTCCHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEecCCCchhHHHHHHHHHHHHHhCC---CeE---EEEeCCCCHHHHHHHHHHHHHHHh
Confidence 356799999999999 6999999999999963 111 333333322234567777777775
No 55
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=96.63 E-value=0.0025 Score=57.88 Aligned_cols=77 Identities=10% Similarity=-0.028 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHH
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 81 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~ 81 (556)
+.|++.|.... ++|+++++||.++. +|.+.+.+++.|+++|++.+.+...+....+....+.+..|.+++.
T Consensus 69 ~~fl~~l~~~~-----l~gk~v~~fgs~g~----~g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la 139 (161)
T 3hly_A 69 ATALSTIFAAA-----HNKQAIGLFDSYGG----DDEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIYQQCEESGTDLG 139 (161)
T ss_dssp HHHHHHHHHHC-----CTTSEEEEECCCCS----SBCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhh-----hCCCEEEEEEcCCC----CcHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHH
Confidence 46888887654 78999999997654 4889999999999999999877666555544334466778888888
Q ss_pred HHHhhh
Q 008731 82 RRLHQI 87 (556)
Q Consensus 82 ~~l~~~ 87 (556)
+.+.+.
T Consensus 140 ~~l~~~ 145 (161)
T 3hly_A 140 QWLTRA 145 (161)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 877654
No 56
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=96.03 E-value=0.008 Score=52.22 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHH
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 81 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~ 81 (556)
+.|++++.. .++|+++++||.+... ||.+.+.+++.|+.+|++.+ +...++...++ .+.+..|.+++.
T Consensus 68 ~~fl~~l~~------~l~~k~~~~~~t~g~~---~~~~~~~l~~~l~~~g~~~~-~~~~~~g~~~~--~~~~~~~~~~l~ 135 (137)
T 2fz5_A 68 EPFFTDLAP------KLKGKKVGLFGSYGWG---SGEWMDAWKQRTEDTGATVI-GTAIVNEMPDN--APECKELGEAAA 135 (137)
T ss_dssp HHHHHHHGG------GCSSCEEEEEEEESSC---CSHHHHHHHHHHHHTTCEEE-EEEEEESSSSS--CTHHHHHHHHHH
T ss_pred HHHHHHhhh------hcCCCEEEEEEecCCC---CchHHHHHHHHHHHCCCEEc-CcEEEeeCCCh--HHHHHHHHHHHh
Confidence 578888853 3899999999975432 88999999999999999987 54444443322 566778877664
No 57
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=95.05 E-value=0.018 Score=59.61 Aligned_cols=75 Identities=15% Similarity=-0.034 Sum_probs=53.6
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeecc-ccccCCCCCCchhhHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER-GLGDDQHPSGYEGALDPWMRS 79 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~-~~~D~~~~~~~~~~~~~W~~~ 79 (556)
++.|+++|.... ++|+++++||. |..||.+.+.+++.|..+|++.+.+. ..++...+....+.+..|.++
T Consensus 321 ~~~~l~~l~~~~-----~~~k~~~~~~s----~g~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 391 (398)
T 1ycg_A 321 VSPLLDDLVGLR-----PKNKVGLAFGA----YGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRK 391 (398)
T ss_dssp GHHHHHHHHHHC-----CSSCEEEEEEE----ESSSCCHHHHHHHHHHHTTCEESCSSCCEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-----cCCCEEEEEEe----CCCchHHHHHHHHHHHHCCeEEecCceEEEecCCCHHHHHHHHHHHHH
Confidence 467888887544 78999999997 44579999999999999999988754 444433322233455666666
Q ss_pred HHHHH
Q 008731 80 LWRRL 84 (556)
Q Consensus 80 ~~~~l 84 (556)
+...+
T Consensus 392 l~~~~ 396 (398)
T 1ycg_A 392 IAARI 396 (398)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 58
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=94.72 E-value=0.032 Score=57.82 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=56.1
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
++.|++++.... ++|+++++||. |..||.+.+.+.+.|.++|++.+.+...++...+......+..|.+++
T Consensus 322 ~~~~l~~l~~~~-----l~~k~~~~f~t----~g~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 392 (402)
T 1e5d_A 322 VAGTLQYIKGLR-----PQNKIGGAFGS----FGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTI 392 (402)
T ss_dssp HHHHHHHHHHTC-----CCSCEEEEEEE----ESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcc-----cCCCEEEEEEc----CCCccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHH
Confidence 367888887544 89999999997 445799999999999999999886544444333222345677888877
Q ss_pred HHHHhh
Q 008731 81 WRRLHQ 86 (556)
Q Consensus 81 ~~~l~~ 86 (556)
...+.+
T Consensus 393 ~~~l~~ 398 (402)
T 1e5d_A 393 ARALKA 398 (402)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 776654
No 59
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=93.82 E-value=0.049 Score=56.41 Aligned_cols=77 Identities=13% Similarity=-0.015 Sum_probs=54.7
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
++.|++++.....+ . |+|+++++||+|+.. +.+.+.+.+.|..+|++.+.+ ..+....+......++.|.+++
T Consensus 326 ~k~~ld~l~~~~~~-~-l~~k~~~~~~~~g~~----~~a~~~l~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 398 (404)
T 2ohh_A 326 VGDLLMYLRGLKFN-R-TLTRKALVFGSMGGN----GGATGTMKELLAEAGFDVACE-EEVYYVPTGDELDACFEAGRKL 398 (404)
T ss_dssp HHHHHHHHHHHCGG-G-TCCEEEEEEEEESSS----CCHHHHHHHHHHHTTEEEEEE-EEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccc-c-cCCCEEEEEEecCCC----ChhHHHHHHHHHHCCCEEEeE-EEEeeCCCHHHHHHHHHHHHHH
Confidence 47899998765432 2 799999999998875 667889999999999998876 3333322222345566777777
Q ss_pred HHHH
Q 008731 81 WRRL 84 (556)
Q Consensus 81 ~~~l 84 (556)
.+.+
T Consensus 399 ~~~~ 402 (404)
T 2ohh_A 399 AAEI 402 (404)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 60
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=90.32 E-value=0.29 Score=50.79 Aligned_cols=77 Identities=14% Similarity=-0.042 Sum_probs=53.1
Q ss_pred CHHHHHHHHhcCCCCCCC-CCceEEEEEecCCCchHHHHHHHHHHHHHHh-cCCeEeecc-ccccCCCCCCchhhHHHHH
Q 008731 1 MKVFWRFLLQKSLSKQWL-EGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD-LGATAVVER-GLGDDQHPSGYEGALDPWM 77 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l-~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~-lGa~~~~~~-~~~D~~~~~~~~~~~~~W~ 77 (556)
++.|++++.... + +|+++++||+|+.. +.+.+.+.+.|.. +|++.+.+. ..+....+......+..|.
T Consensus 326 ~k~fld~l~~~~-----~~~~K~~~~~~t~g~~----~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~g 396 (414)
T 2q9u_A 326 VAAALNYVRGLT-----LIKGKPAFAFGAFGWS----NRAVPDIVAELRDGCKADVYDEKGITFKFNYTEELLEQAYNAG 396 (414)
T ss_dssp HHHHHHHHHHHT-----TTTTSBEEEEEEESSS----CCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc-----ccCCCEEEEEEecCCC----chhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHHHHHHHHHH
Confidence 367889887644 6 89999999998764 5678899999999 999987653 2333222222335566777
Q ss_pred HHHHHHHhh
Q 008731 78 RSLWRRLHQ 86 (556)
Q Consensus 78 ~~~~~~l~~ 86 (556)
+++...+..
T Consensus 397 ~~l~~~~~~ 405 (414)
T 2q9u_A 397 VDLGKRAIA 405 (414)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777665543
No 61
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=86.30 E-value=1.3 Score=40.64 Aligned_cols=55 Identities=20% Similarity=-0.062 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeec
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 57 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~ 57 (556)
+.|++++.... +...|+|+++++|+.+...+..++.+...+.+.|..+|+..+.+
T Consensus 91 k~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~ 145 (200)
T 2a5l_A 91 KYFLDGTSSLW-LTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGI 145 (200)
T ss_dssp HHHHHTCHHHH-HHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred HHHHHHHHHHh-hccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECC
Confidence 45666654320 01238999999999998877666888899999999999987644
No 62
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=80.01 E-value=1.4 Score=45.87 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHH
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 81 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~ 81 (556)
..|+..|+... ++|+++|+||.+- | -+.+++.+.++|+++|++.+-+... -.... .++.+++-.+.+.
T Consensus 339 ~~~l~~l~~~~-----~~~K~~~~FGSyG--W--sg~a~~~~~~~l~~~~~~~v~~~~~-~~~~~--de~~lee~~~~~~ 406 (410)
T 4dik_A 339 RFTLLEIIDKA-----NYEKPVLVFGVHG--W--APSAERTAGELLKETKFRILSFTEI-KGSNM--DERKIEEAISLLK 406 (410)
T ss_dssp HHHHHHHHHHC-----CCCCEEEEEEECC--C--CCTTSCCHHHHHTTSSCEEEEEEEE-CSTTC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-----cCCCEEEEEECCC--C--CcHHHHHHHHHHHHCCCEEECcEEE-ECCCC--CHHHHHHHHHHHH
Confidence 46777777665 7899999999732 2 2678999999999999987654432 22221 3445555444333
No 63
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=79.17 E-value=3.6 Score=40.69 Aligned_cols=45 Identities=18% Similarity=0.377 Sum_probs=38.8
Q ss_pred cee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCC
Q 008731 158 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 203 (556)
Q Consensus 158 ~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N 203 (556)
.+. +|++++.+++.+...++++|+|+.+ ..+.|+||.++.|.++.
T Consensus 33 ~~~~~V~~~~~l~~~~~~~~v~~l~l~~~-~~~~~~pGQ~v~l~~~~ 78 (310)
T 3vo2_A 33 PYVGRCLSNTRITGDDAPGETWHMVFSTE-GEIPYREGQSIGIIADG 78 (310)
T ss_dssp CEEEEEEEEEECSCSSSSSCEEEEEEECT-TCCCCCTTCEEEEECSS
T ss_pred CEEEEEEEEEEccCCCCCccEEEEEEeCC-CCCcccCCCEEEEECCC
Confidence 455 9999999998777788999999976 57889999999998764
No 64
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=76.42 E-value=1.5 Score=40.32 Aligned_cols=49 Identities=27% Similarity=0.222 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEee
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 56 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~ 56 (556)
+.|++++.. ..++|+++++|+.|... ..++.....+...|..+|+..+.
T Consensus 89 K~~ld~l~~-----~~~~gK~~~~~~tgg~~-~~~~a~~~~l~~~l~~~g~~~v~ 137 (197)
T 2vzf_A 89 KAFLDILPQ-----FALAGKAALPLATGGSP-AHVLALDYGLRPVLHSMGVRHVV 137 (197)
T ss_dssp HHHHTTSCT-----TTTTTCEEEEEEEESSG-GGGGHHHHTHHHHHHTTTCSEEC
T ss_pred HHHHHhccc-----cccCCCEEEEEEECCCc-chhhHHHHHHHHHHHHcCCEecc
Confidence 456665532 24899999999998764 34443334699999999998764
No 65
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=72.21 E-value=6.3 Score=35.72 Aligned_cols=53 Identities=17% Similarity=0.028 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEee
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 56 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~ 56 (556)
+.|++++.... +...++|+++++|+.+... .....+.+.+...|..+|+..+.
T Consensus 88 k~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 88 RTFLDQTGGLW-ASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp HHHHTTCHHHH-HHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHHhhhhh-hhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 45555554320 0123899999999998765 44556778888899999998764
No 66
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=71.88 E-value=4.4 Score=36.94 Aligned_cols=55 Identities=13% Similarity=0.010 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeec
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 57 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~ 57 (556)
+.|++++...- ....++|+++++|+.+...+.-...+.+.+...|..+|+..+.+
T Consensus 90 k~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~ 144 (199)
T 2zki_A 90 KTFLDTTAILW-KDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPI 144 (199)
T ss_dssp HHHHHTTHHHH-HTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCC
T ss_pred HHHHHHhhhcc-cccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCC
Confidence 45666653220 11248999999999887765444678889999999999987643
No 67
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=70.09 E-value=6.5 Score=35.87 Aligned_cols=53 Identities=13% Similarity=-0.175 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEe
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 55 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~ 55 (556)
+.|++++...- ....++|+++++|+.+.+.+.-+..+...+...|..+|...+
T Consensus 74 k~fld~~~~~~-~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~v 126 (193)
T 3d7n_A 74 KKFADASSKPW-FSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWV 126 (193)
T ss_dssp HHHHHHTHHHH-HTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHhhhhc-cccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEe
Confidence 56777765211 012389999999999988877778888999999999999765
No 68
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=69.37 E-value=13 Score=32.83 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCCCCCCCceEEEEEe-cCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 4 FWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 4 F~~~l~~~~~~~~~l~~~~~avfGl-Gds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
+.++|...+ ++|+++++|+. |.+.+. .+.+.+.+.|. ||+.+ +...+... ..++.++.|++++
T Consensus 97 ~~~fl~~~~-----l~gk~v~~f~t~g~~~~g---~~~~~l~~~l~--~~~~~-~g~~~~g~---~~~~~v~~W~~~~ 160 (162)
T 3klb_A 97 INTFLESYD-----FAGKIVVPFATSGGSGIG---NCEKNLHKAYP--DIVWK-DGKLLNGQ---ITRDLVTEWFEKI 160 (162)
T ss_dssp HHHHHHTSC-----CTTCEEEEEEECSSCCSH---HHHHHHHHHCT--TSEEC-CCEECCSC---CCHHHHHHHHHHT
T ss_pred HHHHHHhcC-----CCCCEEEEEEEeCCCCcc---HHHHHHHHHcC--CCEee-cceEEeCC---CCHHHHHHHHHHh
Confidence 344555443 89999999998 665663 45667777775 66643 43333322 1467899998764
No 69
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=65.51 E-value=5.6 Score=35.54 Aligned_cols=48 Identities=13% Similarity=0.062 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEe-cCCCchHHHHHHHHHHHHHHhcCCeEee
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVV 56 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGl-Gds~Y~~fc~~~~~l~~~l~~lGa~~~~ 56 (556)
+.|++++... .++|+.+++||. |... .++.+...+...|..+|+..+-
T Consensus 83 k~~lD~l~~~-----~~~gK~~~~~~~sgg~~--g~~~a~~~l~~~l~~~g~~~v~ 131 (174)
T 3gfs_A 83 KNALDFLSSE-----QFKYKPVALLAVAGGGD--GGINALNNMRTVMRGVYANVIP 131 (174)
T ss_dssp HHHHHTCCHH-----HHTTCEEEEEEECCSTT--CSHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhCHh-----hhCCCcEEEEEECCCCh--hHHHHHHHHHHHHHHcCCEEec
Confidence 5677766442 388999999994 4332 2456778899999999998653
No 70
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=64.52 E-value=11 Score=34.55 Aligned_cols=55 Identities=13% Similarity=0.010 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeec
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 57 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~ 57 (556)
+.|++++.... ....++|+++++|+.+...+.-+..+...+...|..+|...+.+
T Consensus 98 k~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 152 (211)
T 1ydg_A 98 RAFIDTLGGLW-SSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPP 152 (211)
T ss_dssp HHHHHTTHHHH-HTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCC
T ss_pred HHHHHHhcccc-ccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCC
Confidence 55666654210 11248999999999988776545778889999999999987644
No 71
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=61.26 E-value=11 Score=34.12 Aligned_cols=81 Identities=12% Similarity=0.003 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCC--------CCCCCCCceEEEEEecCCCch--HHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchh
Q 008731 2 KVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSGYQ--KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEG 71 (556)
Q Consensus 2 ~~F~~~l~~~~~--------~~~~l~~~~~avfGlGds~Y~--~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~ 71 (556)
+.|++++..... +...|+|+++++|+.+...|. .|+.+...+...|..+|++.+-........ . .+.
T Consensus 106 K~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~-~--~~~ 182 (201)
T 1t5b_A 106 KNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFLGFIGITDVNFVFAEGIA-Y--GPE 182 (201)
T ss_dssp HHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHHHHHTTCCCEEEEEECCGG-G--CHH
T ss_pred HHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHHHhhcCcceeEEEEEeccc-C--ChH
Confidence 567777753110 113489999999998777664 377788889999999999876333221111 1 223
Q ss_pred hHHHHHHHHHHHHh
Q 008731 72 ALDPWMRSLWRRLH 85 (556)
Q Consensus 72 ~~~~W~~~~~~~l~ 85 (556)
..+.|+++..+.+.
T Consensus 183 ~~~~~l~~a~~~~~ 196 (201)
T 1t5b_A 183 VAAKAQADAKAAID 196 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44677776655543
No 72
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=59.93 E-value=24 Score=31.44 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=36.4
Q ss_pred CCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHH
Q 008731 18 LEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 80 (556)
Q Consensus 18 l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~ 80 (556)
|+|+++++|+.+-... +..+.+.+.+.|. ||+ +.+....+.. .++.+..|++++
T Consensus 115 l~gk~v~~f~t~g~~~--~g~a~~~l~~~l~--~~~-~~~g~~~~~~----~~~~i~~Wl~~~ 168 (171)
T 4ici_A 115 LKGKTVVPFATSGGSS--IGNSATVLKKTYP--DLN-WKEGRLLNRT----DEKAIRAWLDVI 168 (171)
T ss_dssp CTTSEEEEEEECSSCC--SHHHHHHHHHHST--TSE-ECCCEECSSC----CHHHHHHHHHHH
T ss_pred CCcCEEEEEEecCCCC--cchHHHHHHHHcC--CCe-eccCeEecCC----CHHHHHHHHHHh
Confidence 8999999999964332 3566777888776 555 3343333332 457899998875
No 73
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=59.55 E-value=17 Score=32.68 Aligned_cols=85 Identities=16% Similarity=0.111 Sum_probs=50.3
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEe-cCCCchHHHHHHHHHHHHHHhcCCeEeec------ccc---c---cCCCC-
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVE------RGL---G---DDQHP- 66 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGl-Gds~Y~~fc~~~~~l~~~l~~lGa~~~~~------~~~---~---D~~~~- 66 (556)
++.|++++..... ..++|+++++||. |+.. ..+..+...+.+.|..+|...+.. ... + ....+
T Consensus 71 lk~fld~~~~~~~--~~l~gk~~~~~~t~g~~~-g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 147 (188)
T 2ark_A 71 MKRFFDDVLGDLW--GEIDGKIACAFSSSGGWG-GGNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGEPRS 147 (188)
T ss_dssp HHHHHHHTGGGTT--TSCTTCEEEEEEEESSBT-SSHHHHHHHHHHHHHHTTCEECCEEEEEETTEEESSSEEEESSCCS
T ss_pred HHHHHHHHhhhhH--HHhCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHHCCcEEeCCCccccccccCCCcceeecCCCc
Confidence 3567777754211 2389999999999 5433 124566677888888899865421 100 0 11111
Q ss_pred CCchhhHHHHHHHHHHHHhhhC
Q 008731 67 SGYEGALDPWMRSLWRRLHQID 88 (556)
Q Consensus 67 ~~~~~~~~~W~~~~~~~l~~~~ 88 (556)
+...+.+..|.+++...+.+..
T Consensus 148 ~~~~~~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 148 EEEKEACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 1133556678888877776643
No 74
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=55.82 E-value=23 Score=34.62 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=37.4
Q ss_pred cee-EeEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeeEEccCC
Q 008731 158 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 203 (556)
Q Consensus 158 ~~~-~v~~~~~Lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~i~p~N 203 (556)
.+. +|++.+.+|+++...++++++|..+ ....|+||.++.|..+.
T Consensus 28 ~~~~~V~~~~~~t~~~~~~~v~~~~l~~~-~~~~~~pGQ~v~l~~~~ 73 (311)
T 3lo8_A 28 PFTATIVSVESLVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPG 73 (311)
T ss_dssp CEEEEEEEEEECSCTTSSSCEEEEEEECT-TSSCCCTTCEEEEECSS
T ss_pred CeEEEEEeeEeccCCCCCCccEEEEEeCC-CCCcccCCCEEEEeCCC
Confidence 344 9999999996655678999999987 46899999999998764
No 75
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=51.71 E-value=19 Score=32.36 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=38.1
Q ss_pred CCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCC
Q 008731 18 LEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQ 64 (556)
Q Consensus 18 l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~ 64 (556)
....+++|+-.||..-..++..+..+.++|.++|+....-....|+.
T Consensus 8 ~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~ 54 (172)
T 1mkz_A 8 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENR 54 (172)
T ss_dssp CCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCH
T ss_pred CCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCH
Confidence 56789999999999877889999999999999999765443444543
No 76
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=49.73 E-value=55 Score=29.27 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEee
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 56 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~ 56 (556)
+.|++++..... ..++|+++++|+.+...+. ...+...+...|..+|++.+.
T Consensus 92 K~~iD~~~~~~~--~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~~ 143 (193)
T 1rtt_A 92 KNAIDWASRPPE--QPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPLN 143 (193)
T ss_dssp HHHHHHHTCSSS--CTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEECC
T ss_pred HHHHHHhccccC--cccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEcC
Confidence 678888864311 3489999999999754443 235678899999999998765
No 77
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=47.73 E-value=12 Score=34.36 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=35.4
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeec
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 57 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~ 57 (556)
+|.|++++.. ..|.|+++++++.|... ......-..+...|..+|+..+-+
T Consensus 104 lK~~iD~~~~-----~~l~gK~~~~v~t~G~~-~~~~~~~~~L~~il~~lg~~vv~~ 154 (191)
T 3k1y_A 104 FKMFFDILDT-----DALTGMPTIIAATAGSA-RHSLVLDYALRPLLSYMRAVVVPT 154 (191)
T ss_dssp HHHHHHHSCT-----TTTTTCEEEEEEEESSS-TTTTHHHHTHHHHHHHTTCEECSC
T ss_pred HHHHHHHhhh-----hhcCCCEEEEEEeCCCc-chhhHHHHHHHHHHHHCCCEEcCc
Confidence 3678888754 34899999999988543 233333334888999999987533
No 78
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=41.45 E-value=9 Score=34.29 Aligned_cols=57 Identities=12% Similarity=0.013 Sum_probs=37.5
Q ss_pred CCCCceEEEEEecCCCch--HHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHH
Q 008731 17 WLEGVRYAVFGLGDSGYQ--KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPW 76 (556)
Q Consensus 17 ~l~~~~~avfGlGds~Y~--~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W 76 (556)
..+..+++|+-.||.-+. .++..+..+.++|+++|++...-....|+ +. ..+.+..|
T Consensus 4 ~~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~--i~~al~~a 62 (164)
T 3pzy_A 4 SMTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SP--VGEALRKA 62 (164)
T ss_dssp ---CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HH--HHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HH--HHHHHHHH
Confidence 356789999999998764 57888889999999999986543333344 32 44444444
No 79
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=40.61 E-value=1.3e+02 Score=27.23 Aligned_cols=52 Identities=21% Similarity=0.095 Sum_probs=38.6
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEe
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 55 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~ 55 (556)
+|.|++|+... ....|.|+.+++++.+-..+... .+...+...|..+|+..+
T Consensus 92 LK~~iD~~~~~--~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v 143 (199)
T 4hs4_A 92 LKNAIDWLSRV--SPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVL 143 (199)
T ss_dssp HHHHHHHHTTS--SSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHhccc--CCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEc
Confidence 37889999762 23459999999999965555322 245679999999999876
No 80
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=37.88 E-value=22 Score=35.71 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=26.4
Q ss_pred CCCeEEEcCCCC--chhhHHHHHHHHHhhCCCCCCCEEEEEccc
Q 008731 400 SVPLILIGPGTG--CAPFRGFVEERAIQSSSGPAAPIIFFFGCR 441 (556)
Q Consensus 400 ~~piimIa~GTG--IAPf~s~lq~~~~~~~~~~~~~~~L~~G~R 441 (556)
++.|++.|+||| |.|.+++.++...++ .-.+|.|..
T Consensus 2 ~~~i~i~~GGTgGHi~palala~~L~~~g------~~V~~vg~~ 39 (365)
T 3s2u_A 2 KGNVLIMAGGTGGHVFPALACAREFQARG------YAVHWLGTP 39 (365)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHHHHHTT------CEEEEEECS
T ss_pred CCcEEEEcCCCHHHHHHHHHHHHHHHhCC------CEEEEEECC
Confidence 356888999997 889999999987753 335555543
No 81
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=32.65 E-value=13 Score=33.74 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=35.2
Q ss_pred CCCceEEEEEecCCCc-------hHHHHHHHHHHHHHHhcCCeEeeccccccC
Q 008731 18 LEGVRYAVFGLGDSGY-------QKFNFVAKKLDNRLLDLGATAVVERGLGDD 63 (556)
Q Consensus 18 l~~~~~avfGlGds~Y-------~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~ 63 (556)
.+..++||+-.||.-+ ..++..+..+.++|+++|++...-....|+
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd 65 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD 65 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC
Confidence 5678999999999765 347778888999999999986543333344
No 82
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=31.20 E-value=56 Score=30.53 Aligned_cols=81 Identities=15% Similarity=0.036 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHH
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 81 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~ 81 (556)
+.|.+++.... ....+.|+++++|+.+...- +..+...+...|..+|+..+.+....+... +.....++.+.+.+.
T Consensus 99 K~~iDr~~~~~-~~~~l~gK~~~~i~t~g~~g--~~~~~~~l~~~l~~~G~~~v~~~~~~~~~~-~~~~~~~~~~~~~la 174 (242)
T 1sqs_A 99 KNFIERIGGWS-HLFRLAGKFVVTLDVAESNG--SDNVSEYLRDIFSYMGGQILHQVSITNSLK-DIAEAQLMEATYKIE 174 (242)
T ss_dssp HHHHHHTGGGT-TTTTTTTCEEEEEEEESSCC--SCCHHHHHHHHHHHTTCEEEEEEEEEGGGG-GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cccccCCCEEEEEEeCCCCc--hhhHHHHHHHHHHHCCCeeeeEEEEeccCC-hHHHHHHHHHHHHHH
Confidence 56777774321 12258999999998654321 224567789999999998765543323211 124567778888888
Q ss_pred HHHhh
Q 008731 82 RRLHQ 86 (556)
Q Consensus 82 ~~l~~ 86 (556)
..+..
T Consensus 175 ~~i~~ 179 (242)
T 1sqs_A 175 DVLEG 179 (242)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 87755
No 83
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=30.70 E-value=2.1e+02 Score=26.45 Aligned_cols=70 Identities=10% Similarity=-0.004 Sum_probs=46.4
Q ss_pred CCCCCceEEEEEecCCCchHH-------HH-HH----HHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHHHHHHH
Q 008731 16 QWLEGVRYAVFGLGDSGYQKF-------NF-VA----KKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRR 83 (556)
Q Consensus 16 ~~l~~~~~avfGlGds~Y~~f-------c~-~~----~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~~~~~~ 83 (556)
..|+|+++.|+-........| +. .. .-+...|.-+|.+.+-+....+... +..++.|++++.+.
T Consensus 136 glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~~~~~l~p~~~~l~f~G~~~l~~~~~~g~~~----~~~~~~~~~~~~~~ 211 (218)
T 3rpe_A 136 GLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKANQFLGMKPLPTFMCNDVIK----QPDIEGDIARYRQH 211 (218)
T ss_dssp BSCTTCEEEEEEECSSCTHHHHCTTSTTTTCHHHHHTHHHHHHHHHTTCEECCCEEECSTTT----SCCHHHHHHHHHHH
T ss_pred cCCCCCEEEEEEcCCCChHhhcccccccccCCHHHHHHHHHHHHHhCCCEEeceEEEeCCCC----hHHHHHHHHHHHHH
Confidence 458999998886655543322 22 11 2257788889999876655555443 34788999998888
Q ss_pred HhhhCC
Q 008731 84 LHQIDP 89 (556)
Q Consensus 84 l~~~~~ 89 (556)
|.+.++
T Consensus 212 L~~~~~ 217 (218)
T 3rpe_A 212 LAENVN 217 (218)
T ss_dssp HHHHTC
T ss_pred HHHhcc
Confidence 877654
No 84
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=27.99 E-value=85 Score=28.34 Aligned_cols=85 Identities=9% Similarity=-0.038 Sum_probs=54.1
Q ss_pred HHHHHHHHhcC--------CCCCCCCCceEEEEEecCCC--chH--HHHHHHHHHHHHHhcCCeEeeccccccCCCCCCc
Q 008731 2 KVFWRFLLQKS--------LSKQWLEGVRYAVFGLGDSG--YQK--FNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGY 69 (556)
Q Consensus 2 ~~F~~~l~~~~--------~~~~~l~~~~~avfGlGds~--Y~~--fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~ 69 (556)
|.|++++.... .+...|+|+++.++..+... |.. |......+...|.-+|.+.+-......... ..
T Consensus 93 K~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~--~~ 170 (196)
T 3lcm_A 93 KGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAISPVKLTELTSIEK--IS 170 (196)
T ss_dssp HHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCCCEEEEEECSTTT--SC
T ss_pred HHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCceeeEEEEeCcCC--CC
Confidence 67888875321 11235899999999887766 531 111125577788889998765544434332 24
Q ss_pred hhhHHHHHHHHHHHHhhhC
Q 008731 70 EGALDPWMRSLWRRLHQID 88 (556)
Q Consensus 70 ~~~~~~W~~~~~~~l~~~~ 88 (556)
++..+.|++++.+...+.+
T Consensus 171 ~~~~~~~l~~~~~~~~~~~ 189 (196)
T 3lcm_A 171 DDERQKLLHKVAQITRNIL 189 (196)
T ss_dssp HHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678899998887776653
No 85
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=27.92 E-value=39 Score=30.09 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=34.9
Q ss_pred CCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeeccccccC
Q 008731 18 LEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDD 63 (556)
Q Consensus 18 l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~~~~~D~ 63 (556)
....+++|+-.||.--..++..+..+.++|+++|+....-....|+
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd 56 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD 56 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC
Confidence 4668999999999884467778888999999999976543334344
No 86
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=27.89 E-value=58 Score=28.97 Aligned_cols=46 Identities=20% Similarity=0.115 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEee
Q 008731 2 KVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 56 (556)
Q Consensus 2 ~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~ 56 (556)
+.|++++.. .++|+++++|+.|...- ..+...+...|..+|++.+.
T Consensus 104 K~~iD~~~~------~l~gK~~~~~~~G~~~~---~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 104 KNAIDRLYH------EWHGKPALVVSYGGHGG---SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHHHTCST------TTTTCEEEEEEEETTTT---HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHh------hcCCCEEEEEEeCCcch---hhHHHHHHHHHHHCCCEEcc
Confidence 455555532 38899999999988542 35667899999999998654
No 87
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=27.46 E-value=2.7e+02 Score=24.87 Aligned_cols=52 Identities=17% Similarity=0.011 Sum_probs=36.7
Q ss_pred CHHHHHHHHhcCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEe
Q 008731 1 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 55 (556)
Q Consensus 1 ~~~F~~~l~~~~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~ 55 (556)
++.|++|+... ....+.|+.+++++..-..+... .+...+...|..+|+..+
T Consensus 91 lK~~iD~~~~~--~~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~ 142 (193)
T 3svl_A 91 LKNAIDWLSRL--PDQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVM 142 (193)
T ss_dssp HHHHHHHHHTS--TTCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHhhc--CccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEc
Confidence 37899999763 23458999999999732223221 345778999999999865
No 88
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=27.13 E-value=3.6e+02 Score=27.52 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=55.5
Q ss_pred CCeEEEcCCCCchhhHHHHHHHH------HhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEE
Q 008731 401 VPLILIGPGTGCAPFRGFVEERA------IQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 474 (556)
Q Consensus 401 ~piimIa~GTGIAPf~s~lq~~~------~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 474 (556)
.|.+++=.+.=-.-+.++++... ..... ++++++||+-...|+ ++-+..+.. .+. .++ ++
T Consensus 311 ~~~vi~D~AHNp~a~~all~~l~~~~~~~~~~~~---~r~i~V~G~~~dkd~--~~~~~~l~~---~~~-----~v~-~~ 376 (437)
T 3nrs_A 311 QPLLILDVAHNPHAARYLVNRLAQVINPVNASKQ---GKVRAVVGMLSDKDI--AGTLACLSE---RVD-----EWY-CA 376 (437)
T ss_dssp TTEEEECCCCSHHHHHHHHHHHHHTC-----------CCEEEEECCBTTBCH--HHHHHHHTT---TCC-----EEE-EC
T ss_pred CCeEEEECCCCHHHHHHHHHHHHhhcchhhhcCC---CCEEEEEeCCCCCCH--HHHHHHHHh---cCC-----EEE-Ee
Confidence 35666665555556777777665 32122 679999998754464 555555543 232 333 33
Q ss_pred ecCCCCc-------------cchhhhHHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHH
Q 008731 475 SRKQPQK-------------VYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF 522 (556)
Q Consensus 475 Sr~~~~k-------------~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L 522 (556)
.-+.... .++.+ +.+..+.+.+...++..|.|||+- .|+.++++.+
T Consensus 377 ~~~~~r~~~~~~l~~~~~~~~~~~d-~~~Ai~~a~~~a~~~D~VLv~GS~-~~v~~~~~~~ 435 (437)
T 3nrs_A 377 PLEGPRGASAGQLAEHLVSARQFSD-VETAWRQAMQDADTQDVVIVCGSF-HTVAHVMAAL 435 (437)
T ss_dssp CCSSTTBCCHHHHHTTCSSCEECSS-HHHHHHHHHHHCCTTCEEEEESSH-HHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHhhCCCcCC-HHHHHHHHHHhcCCCCeEEEEehH-HHHHHHHHHh
Confidence 3222110 01111 111122233334458899999997 8887777654
No 89
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=26.29 E-value=27 Score=31.31 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=35.0
Q ss_pred CCceEEEEEecCCCchH-------HHHHHHHHHHHHHhcCCeEeeccccccCC
Q 008731 19 EGVRYAVFGLGDSGYQK-------FNFVAKKLDNRLLDLGATAVVERGLGDDQ 64 (556)
Q Consensus 19 ~~~~~avfGlGds~Y~~-------fc~~~~~l~~~l~~lGa~~~~~~~~~D~~ 64 (556)
+.+++||+=.||+.|.. +...+..|.++|.++|+..+.-..-.|+.
T Consensus 14 ~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~ 66 (178)
T 3iwt_A 14 KSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDK 66 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCH
T ss_pred CCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCH
Confidence 56899999999987641 36678889999999999866544444543
No 90
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=26.06 E-value=3.8e+02 Score=27.02 Aligned_cols=108 Identities=7% Similarity=0.076 Sum_probs=55.2
Q ss_pred CeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCCccccHHHHHHhHhcCCCccccCCCcEEEEEecCCCCc
Q 008731 402 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQK 481 (556)
Q Consensus 402 piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k 481 (556)
+.+++=.+.=-.-+.+.++........ ++++++||+....|+ ++.+..+... +. .+ +++..+....
T Consensus 297 ~~~i~D~Ahnp~s~~~~l~~l~~~~~~---~~~i~V~g~~~~kd~--~~~~~~l~~~---~d-----~v-i~~~~~~~r~ 362 (422)
T 1w78_A 297 PRVIFDVAHNPHAAEYLTGRMKALPKN---GRVLAVIGMLHDKDI--AGTLAWLKSV---VD-----DW-YCAPLEGPRG 362 (422)
T ss_dssp TEEEEECCCSHHHHHHHHHHHHHSCSC---SCEEEEECCBTTSCH--HHHHHHHHTT---CS-----EE-EECCCCSSSB
T ss_pred CeEEEECCCCHHHHHHHHHHHHHhCCC---CCEEEEEeccCCCCH--HHHHHHHHhh---CC-----EE-EEECCCCCCC
Confidence 556666555555567776665543222 678999998544454 4444444332 31 23 3332111100
Q ss_pred c---chhhh---------HHHcHHHHHHhHcCCCEEEEeCCCCccHHHHHHHHHH
Q 008731 482 V---YVQHK---------MLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 524 (556)
Q Consensus 482 ~---yVqd~---------l~~~~~~l~~~l~~~~~iyvCG~~~~m~~~v~~~L~~ 524 (556)
. -+.+. +.+..+.+.+...++..|++||+- .|..++++.|..
T Consensus 363 ~~~~~l~~~~~~~~~~~~~~~ai~~a~~~~~~~d~vLv~GS~-~~~~~~~~~l~~ 416 (422)
T 1w78_A 363 ATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGSF-HTVAHVMEVIDA 416 (422)
T ss_dssp CCHHHHHHHHSSCEECSSHHHHHHHHHHHCCTTCEEEEESSH-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhcccCCCHHHHHHHHHHhcCCCCEEEEEeeH-HHHHHHHHHHHh
Confidence 0 01110 111112222333458899999996 777777766544
No 91
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=25.62 E-value=34 Score=31.43 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=26.3
Q ss_pred CceEEEEEecCCCch--HHHHHHHHHHHHHHhcCCe
Q 008731 20 GVRYAVFGLGDSGYQ--KFNFVAKKLDNRLLDLGAT 53 (556)
Q Consensus 20 ~~~~avfGlGds~Y~--~fc~~~~~l~~~l~~lGa~ 53 (556)
..+++|+-.||.-+. .++..+..+.++|+++|+.
T Consensus 3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~ 38 (195)
T 1di6_A 3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTT 38 (195)
T ss_dssp CEEEEEEEEECC-------CCHHHHHHHHHHHHBCS
T ss_pred CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCC
Confidence 478999999999875 5777888899999999987
No 92
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=25.05 E-value=30 Score=20.41 Aligned_cols=12 Identities=25% Similarity=0.750 Sum_probs=9.2
Q ss_pred CceEEEEEecCC
Q 008731 20 GVRYAVFGLGDS 31 (556)
Q Consensus 20 ~~~~avfGlGds 31 (556)
.+-|-|||+||-
T Consensus 3 slFyEIFGtG~E 14 (26)
T 2xpn_B 3 HMFFEIFGTGEE 14 (26)
T ss_pred cEEEEEecCCce
Confidence 356789999985
No 93
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=24.83 E-value=1.1e+02 Score=29.20 Aligned_cols=38 Identities=11% Similarity=0.325 Sum_probs=31.3
Q ss_pred EeEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeeEEccCC
Q 008731 161 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 203 (556)
Q Consensus 161 ~v~~~~~Lt~~~~~~~v~~i~l~~~~-~~~~y~~GD~l~i~p~N 203 (556)
+|++++.+|+ ++++++|..++ ..+.|+||.++.|..+.
T Consensus 13 ~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~p~ 51 (290)
T 2r6h_A 13 EVLSNKNVST-----FIKEFVVKLPEGETMNFKSGSYAQIKIPK 51 (290)
T ss_dssp EEEEEEESSS-----SEEEEEEECSTTCCCCCCTTCEEEEEECS
T ss_pred EEEEeeecCC-----CeEEEEEEcCCCCccccCCCceEEEEccc
Confidence 8999999984 58999999873 35789999999997654
No 94
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=22.04 E-value=2.2e+02 Score=25.31 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=37.7
Q ss_pred CHHHHHHHHhcCC-----CCCCCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEeec
Q 008731 1 MKVFWRFLLQKSL-----SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 57 (556)
Q Consensus 1 ~~~F~~~l~~~~~-----~~~~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~~~ 57 (556)
+|.|.+++..... ....|+|+++++++.+... .+..+...+...|..+|+..+-.
T Consensus 86 lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~--g~~~~~~~l~~~l~~~G~~~v~~ 145 (192)
T 3fvw_A 86 VKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA--SPEEVFEDYRSLLPFIRMHLVDQ 145 (192)
T ss_dssp HHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCC
T ss_pred HHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc--chhHHHHHHHHHHHHcCCeeecc
Confidence 3678888875321 1235899999999887763 23345577899999999987633
No 95
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=21.26 E-value=4.1e+02 Score=23.78 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=35.5
Q ss_pred CCCCCceEEEEEecCCCchHH------------HHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHHH
Q 008731 16 QWLEGVRYAVFGLGDSGYQKF------------NFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMR 78 (556)
Q Consensus 16 ~~l~~~~~avfGlGds~Y~~f------------c~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~~ 78 (556)
..|.|++++++.........| ..+...+...|.-+|++.+-+....+.......+..++.+.+
T Consensus 123 ~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~~~~l~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (204)
T 2amj_A 123 GLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEPLPTFIANDVIKMPDVPRYTEEYRK 197 (204)
T ss_dssp BSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCHHHHTHHHHHHHHHTTCEECCCEEECSTTTSCCTTTHHHHHHH
T ss_pred cccCCCeEEEEEeCCCChHHHccCcccccCCCHHHHHHHHHHHHHHcCCeecceEEEeCCCCcHHHHHHHHHHHH
Confidence 458999999988765543222 122233678899999987644433332221123444444443
No 96
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=21.04 E-value=2.3e+02 Score=25.15 Aligned_cols=86 Identities=6% Similarity=-0.070 Sum_probs=52.4
Q ss_pred HHHHHHHHhcC---CCCCCCCCceEEEEEecCCCchH----------HHHHHHHHHHHHHhcCCeEeeccccccCCCCCC
Q 008731 2 KVFWRFLLQKS---LSKQWLEGVRYAVFGLGDSGYQK----------FNFVAKKLDNRLLDLGATAVVERGLGDDQHPSG 68 (556)
Q Consensus 2 ~~F~~~l~~~~---~~~~~l~~~~~avfGlGds~Y~~----------fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~ 68 (556)
|.|++.+.... .....|+|+++.++......... +...-.-+...+.-+|.+.+-+....+... .
T Consensus 71 K~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~~~~g~~~--~ 148 (177)
T 3ha2_A 71 KQWMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPILAVHQFLY--L 148 (177)
T ss_dssp HHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCEEEESGGG--S
T ss_pred HHHHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeEEEeCCCC--C
Confidence 55666653210 01245899999988765554322 233444457778889998765444433221 1
Q ss_pred chhhHHHHHHHHHHHHhhhCC
Q 008731 69 YEGALDPWMRSLWRRLHQIDP 89 (556)
Q Consensus 69 ~~~~~~~W~~~~~~~l~~~~~ 89 (556)
.++..+.|++++.+.|.....
T Consensus 149 ~~~~~~~~l~~~~~~l~~~~~ 169 (177)
T 3ha2_A 149 EPDAQQRLLVAYQQYATNVGA 169 (177)
T ss_dssp CHHHHHHHHHHHHHHHHCCC-
T ss_pred CHHHHHHHHHHHHHHHccccc
Confidence 457889999999988877544
No 97
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=20.87 E-value=66 Score=32.56 Aligned_cols=31 Identities=48% Similarity=0.589 Sum_probs=27.5
Q ss_pred CCCCceEEEEEecCCCchHHHHHHHHHHHHHHhcCCeEe
Q 008731 17 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 55 (556)
Q Consensus 17 ~l~~~~~avfGlGds~Y~~fc~~~~~l~~~l~~lGa~~~ 55 (556)
.|+|++++|.|+|+ ++..+-+.|.++|++.+
T Consensus 170 ~L~GktV~V~G~G~--------VG~~~A~~L~~~GakVv 200 (364)
T 1leh_A 170 SLEGLAVSVQGLGN--------VAKALCKKLNTEGAKLV 200 (364)
T ss_dssp CCTTCEEEEECCSH--------HHHHHHHHHHHTTCEEE
T ss_pred CCCcCEEEEECchH--------HHHHHHHHHHHCCCEEE
Confidence 49999999999987 78889999999999754
No 98
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=20.85 E-value=34 Score=30.82 Aligned_cols=55 Identities=18% Similarity=0.024 Sum_probs=38.3
Q ss_pred ceEEEEEecCCCch--HHHHHHHHHHHHHHhcCCeEeeccccccCCCCCCchhhHHHHH
Q 008731 21 VRYAVFGLGDSGYQ--KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWM 77 (556)
Q Consensus 21 ~~~avfGlGds~Y~--~fc~~~~~l~~~l~~lGa~~~~~~~~~D~~~~~~~~~~~~~W~ 77 (556)
++++|+-.||.-.. .++.-+..+.++|.++|+....-....|+.+. ..+.+..|.
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~--I~~~l~~a~ 60 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDE--IGWAFRVAL 60 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHH--HHHHHHHHH
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHH--HHHHHHHHH
Confidence 78999999997553 57777888999999999986544444455422 444454443
No 99
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=20.70 E-value=3.7e+02 Score=22.37 Aligned_cols=85 Identities=9% Similarity=0.083 Sum_probs=58.4
Q ss_pred ceEEEEee-cCCCCCCCCCCCeEEEcCCCCchhhHHHHHHHHHhhCCCCCCCEEEEEcccCCC-ccccHHHHHHhHhcCC
Q 008731 383 IYIPAWFQ-KGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDG 460 (556)
Q Consensus 383 ~~v~v~~~-~g~F~lp~~~~piimIa~GTGIAPf~s~lq~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g 460 (556)
+.|+|-+. ...=.+|..++.-.+|-...=++-|..+|+.++..... ..+.||.+..-+. |-...+-.+.+....|
T Consensus 30 ~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~---~alFl~Vn~~~p~~~~~m~~lY~~~kd~DG 106 (119)
T 3h9d_A 30 DRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAE---SALFVYTNDTVLPSSAQMADIYSKYKDEDG 106 (119)
T ss_dssp TEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTT---SCCEEEETTEECCTTSBHHHHHHHHCCTTS
T ss_pred CeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCcc---ceEEEEECCcCCCccchHHHHHHHcCCCCC
Confidence 67776663 33334665556667888888899999999999876543 4567777766666 7777777777754324
Q ss_pred CccccCCCcEEEEEecCC
Q 008731 461 VFSEAKGGGFYVAFSRKQ 478 (556)
Q Consensus 461 ~l~~~~~~~~~~a~Sr~~ 478 (556)
.+++.||.++
T Consensus 107 --------fLyv~Ys~e~ 116 (119)
T 3h9d_A 107 --------FLYMKYSGEA 116 (119)
T ss_dssp --------CEEEEEECC-
T ss_pred --------eEEEEEeccc
Confidence 4688888654
Done!