Query 008733
Match_columns 555
No_of_seqs 334 out of 2476
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 15:54:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 2.3E-29 5E-34 221.0 3.7 110 91-206 1-114 (114)
2 PF00954 S_locus_glycop: S-loc 99.9 7E-27 1.5E-31 204.4 11.5 110 232-345 1-110 (110)
3 cd00028 B_lectin Bulb-type man 99.9 3.1E-25 6.7E-30 195.8 15.1 115 52-174 2-116 (116)
4 smart00108 B_lectin Bulb-type 99.9 7.6E-24 1.6E-28 186.4 14.6 113 52-173 2-114 (114)
5 PF08276 PAN_2: PAN-like domai 99.6 4.3E-15 9.3E-20 117.4 5.5 66 366-432 1-66 (66)
6 cd01098 PAN_AP_plant Plant PAN 99.4 8.3E-13 1.8E-17 109.1 7.2 80 363-447 2-84 (84)
7 cd00129 PAN_APPLE PAN/APPLE-li 99.3 4E-12 8.6E-17 104.0 5.8 71 366-445 5-79 (80)
8 KOG1187 Serine/threonine prote 98.9 2.2E-09 4.8E-14 113.1 5.4 49 503-554 61-109 (361)
9 smart00108 B_lectin Bulb-type 98.8 2.3E-08 5E-13 87.8 9.6 87 110-234 23-111 (114)
10 cd00028 B_lectin Bulb-type man 98.8 5.5E-08 1.2E-12 85.8 10.4 83 118-236 30-114 (116)
11 PF01453 B_lectin: D-mannose b 98.5 1.6E-06 3.5E-11 76.2 11.4 100 58-175 12-114 (114)
12 smart00473 PAN_AP divergent su 98.4 1.1E-06 2.5E-11 70.8 6.8 72 370-445 4-77 (78)
13 PLN00113 leucine-rich repeat r 97.1 0.0012 2.5E-08 78.8 7.8 42 507-554 683-725 (968)
14 cd01100 APPLE_Factor_XI_like S 97.0 0.00067 1.5E-08 54.5 3.7 50 374-427 8-57 (73)
15 KOG3653 Transforming growth fa 96.8 0.0012 2.7E-08 69.9 4.3 26 524-553 217-242 (534)
16 PLN03224 probable serine/threo 96.3 0.0026 5.7E-08 70.1 3.4 36 515-553 143-195 (507)
17 KOG1025 Epidermal growth facto 95.6 0.014 2.9E-07 66.0 4.7 34 521-554 700-735 (1177)
18 KOG0193 Serine/threonine prote 95.5 0.0092 2E-07 65.2 3.0 36 506-553 388-423 (678)
19 PLN03225 Serine/threonine-prot 95.0 0.016 3.4E-07 65.1 3.0 36 515-553 130-170 (566)
20 KOG0658 Glycogen synthase kina 94.3 0.026 5.5E-07 58.4 2.4 29 521-552 28-57 (364)
21 PTZ00284 protein kinase; Provi 93.6 0.031 6.8E-07 61.0 1.6 42 509-553 121-163 (467)
22 KOG0196 Tyrosine kinase, EPH ( 92.3 0.15 3.2E-06 57.7 4.3 47 506-553 609-666 (996)
23 KOG0663 Protein kinase PITSLRE 91.4 0.13 2.8E-06 52.9 2.5 30 521-553 80-110 (419)
24 PTZ00036 glycogen synthase kin 91.0 0.15 3.2E-06 55.5 2.7 34 517-553 66-100 (440)
25 cd05104 PTKc_Kit Catalytic dom 91.0 0.16 3.5E-06 53.7 3.0 32 519-553 37-74 (375)
26 KOG0192 Tyrosine kinase specif 90.9 0.2 4.3E-06 53.0 3.5 29 523-554 47-75 (362)
27 PTZ00283 serine/threonine prot 90.5 0.12 2.6E-06 57.1 1.4 35 516-553 31-66 (496)
28 KOG4236 Serine/threonine prote 90.4 0.16 3.5E-06 55.0 2.2 33 519-555 567-600 (888)
29 KOG1035 eIF-2alpha kinase GCN2 90.3 0.074 1.6E-06 62.6 -0.3 33 517-552 479-512 (1351)
30 KOG1006 Mitogen-activated prot 90.2 0.15 3.3E-06 50.8 1.7 41 503-553 57-98 (361)
31 KOG0600 Cdc2-related protein k 89.8 0.14 3E-06 55.3 1.1 27 524-553 124-151 (560)
32 cd05106 PTKc_CSF-1R Catalytic 89.5 0.26 5.6E-06 52.2 3.0 32 519-553 40-77 (374)
33 smart00090 RIO RIO-like kinase 89.4 0.35 7.5E-06 48.0 3.6 28 523-553 34-63 (237)
34 cd05105 PTKc_PDGFR_alpha Catal 89.1 0.38 8.3E-06 51.5 4.0 29 522-553 42-76 (400)
35 PF00024 PAN_1: PAN domain Thi 89.0 0.48 1E-05 37.7 3.6 54 371-428 3-57 (79)
36 cd05622 STKc_ROCK1 Catalytic d 89.0 0.21 4.6E-06 52.8 1.9 42 509-553 35-77 (371)
37 TIGR01982 UbiB 2-polyprenylphe 88.8 0.38 8.2E-06 52.3 3.7 33 517-553 118-150 (437)
38 cd05596 STKc_ROCK Catalytic do 88.6 0.16 3.6E-06 53.6 0.7 35 516-553 42-77 (370)
39 cd05107 PTKc_PDGFR_beta Cataly 88.5 0.35 7.6E-06 51.9 3.2 30 522-554 42-77 (401)
40 cd05621 STKc_ROCK2 Catalytic d 88.3 0.24 5.3E-06 52.3 1.8 37 514-553 40-77 (370)
41 PLN00034 mitogen-activated pro 88.2 0.36 7.7E-06 50.4 2.9 28 523-553 80-108 (353)
42 smart00223 APPLE APPLE domain. 88.0 0.73 1.6E-05 37.6 4.0 52 375-427 6-57 (79)
43 KOG0194 Protein tyrosine kinas 87.7 0.42 9.1E-06 52.1 3.1 30 523-553 163-195 (474)
44 PF07645 EGF_CA: Calcium-bindi 87.0 0.23 5E-06 35.2 0.4 31 312-343 3-35 (42)
45 PTZ00426 cAMP-dependent protei 86.5 0.39 8.5E-06 50.1 2.1 32 519-553 32-65 (340)
46 KOG1026 Nerve growth factor re 86.3 0.15 3.2E-06 58.0 -1.2 31 523-554 492-526 (774)
47 cd07875 STKc_JNK1 Catalytic do 86.3 0.56 1.2E-05 49.2 3.1 34 517-553 24-58 (364)
48 KOG1095 Protein tyrosine kinas 86.1 0.59 1.3E-05 55.2 3.4 32 523-554 698-732 (1025)
49 cd06635 STKc_TAO1 Catalytic do 85.6 0.62 1.3E-05 47.7 3.0 32 519-553 27-59 (317)
50 KOG0605 NDR and related serine 85.6 0.63 1.4E-05 50.6 3.0 35 517-554 141-176 (550)
51 KOG0577 Serine/threonine prote 85.3 0.36 7.8E-06 53.1 1.0 30 521-553 30-60 (948)
52 cd00053 EGF Epidermal growth f 84.3 0.78 1.7E-05 30.1 2.0 29 314-343 2-31 (36)
53 KOG0694 Serine/threonine prote 84.3 0.84 1.8E-05 51.1 3.3 35 517-554 368-403 (694)
54 PF14295 PAN_4: PAN domain; PD 84.0 0.81 1.8E-05 33.2 2.2 25 390-414 14-38 (51)
55 PF03109 ABC1: ABC1 family; I 83.6 0.36 7.9E-06 42.6 0.1 31 518-552 13-43 (119)
56 cd05055 PTKc_PDGFR Catalytic d 83.4 0.81 1.8E-05 46.5 2.7 33 518-553 36-74 (302)
57 PHA03209 serine/threonine kina 82.7 1.1 2.4E-05 46.9 3.4 34 516-552 65-99 (357)
58 PRK04750 ubiB putative ubiquin 82.5 1.4 2.9E-05 49.2 4.1 33 517-553 120-153 (537)
59 smart00179 EGF_CA Calcium-bind 82.3 1 2.3E-05 30.5 2.1 31 312-342 3-33 (39)
60 KOG1167 Serine/threonine prote 82.2 0.48 1E-05 50.0 0.4 37 514-553 33-73 (418)
61 PRK11138 outer membrane biogen 81.5 32 0.00069 36.5 14.1 77 89-170 86-186 (394)
62 PRK09605 bifunctional UGMP fam 81.3 0.96 2.1E-05 50.5 2.5 37 507-543 323-359 (535)
63 KOG0574 STE20-like serine/thre 81.3 0.4 8.7E-06 48.6 -0.5 26 524-552 40-66 (502)
64 PHA03211 serine/threonine kina 81.2 1.2 2.6E-05 48.8 3.0 34 516-552 168-202 (461)
65 KOG0032 Ca2+/calmodulin-depend 80.1 1.5 3.2E-05 46.8 3.3 29 523-554 41-70 (382)
66 KOG1166 Mitotic checkpoint ser 78.6 1.4 3.1E-05 51.9 2.8 31 518-551 699-729 (974)
67 KOG0199 ACK and related non-re 78.2 1.3 2.8E-05 49.9 2.1 29 524-553 117-147 (1039)
68 PHA03212 serine/threonine kina 77.2 1.8 3.9E-05 46.2 2.9 33 518-553 93-126 (391)
69 cd00054 EGF_CA Calcium-binding 76.4 2.1 4.4E-05 28.5 2.0 32 312-343 3-34 (38)
70 KOG0598 Ribosomal protein S6 k 76.0 1.3 2.8E-05 46.1 1.3 34 518-554 26-60 (357)
71 PHA03207 serine/threonine kina 75.7 2.7 5.9E-05 44.6 3.7 32 519-553 94-128 (392)
72 KOG2052 Activin A type IB rece 74.2 2.3 4.9E-05 45.6 2.6 27 523-553 217-243 (513)
73 PF01683 EB: EB module; Inter 74.0 2.3 5.1E-05 31.4 1.9 32 309-344 17-48 (52)
74 KOG1027 Serine/threonine prote 73.7 0.97 2.1E-05 51.7 -0.3 30 519-552 511-541 (903)
75 KOG0581 Mitogen-activated prot 70.8 5.6 0.00012 41.5 4.4 37 506-552 75-112 (364)
76 KOG1094 Discoidin domain recep 69.8 3.8 8.3E-05 45.4 3.1 29 523-554 544-572 (807)
77 PF07974 EGF_2: EGF-like domai 68.9 4.2 9.1E-05 27.1 2.0 24 318-343 6-29 (32)
78 PF12947 EGF_3: EGF domain; I 68.9 1.5 3.2E-05 30.1 -0.1 27 317-343 5-31 (36)
79 cd06639 STKc_myosinIIIB Cataly 67.9 1.7 3.7E-05 43.5 0.1 35 506-540 11-45 (291)
80 PF12662 cEGF: Complement Clr- 67.9 3.1 6.8E-05 25.8 1.2 10 335-344 4-13 (24)
81 KOG4721 Serine/threonine prote 67.7 2.6 5.5E-05 46.6 1.2 40 504-554 118-157 (904)
82 KOG1989 ARK protein kinase fam 67.2 4 8.6E-05 46.8 2.7 27 523-552 43-70 (738)
83 KOG0197 Tyrosine kinases [Sign 67.0 3.1 6.7E-05 45.1 1.7 28 523-553 212-239 (468)
84 PF00008 EGF: EGF-like domain 64.2 2.2 4.7E-05 28.3 -0.1 25 318-343 4-30 (32)
85 smart00605 CW CW domain. 63.9 15 0.00034 30.6 5.1 54 390-447 20-75 (94)
86 KOG0666 Cyclin C-dependent kin 63.5 1.9 4.1E-05 44.3 -0.6 31 523-553 30-62 (438)
87 KOG0696 Serine/threonine prote 63.4 2.3 5E-05 45.1 -0.0 47 505-554 338-384 (683)
88 KOG0986 G protein-coupled rece 62.8 1.5 3.2E-05 47.1 -1.6 35 517-554 185-220 (591)
89 KOG4257 Focal adhesion tyrosin 62.1 5.3 0.00012 44.7 2.4 29 523-552 395-426 (974)
90 KOG1165 Casein kinase (serine/ 61.4 5.6 0.00012 41.3 2.3 30 519-551 30-60 (449)
91 PF12661 hEGF: Human growth fa 60.8 2.1 4.6E-05 22.5 -0.4 9 335-343 2-10 (13)
92 smart00181 EGF Epidermal growt 60.4 7.4 0.00016 25.6 2.1 24 318-343 6-30 (35)
93 KOG0592 3-phosphoinositide-dep 60.2 4.1 8.9E-05 44.7 1.1 33 519-554 75-108 (604)
94 COG0661 AarF Predicted unusual 60.1 6.7 0.00014 43.6 2.8 33 517-553 126-158 (517)
95 PF09064 Tme5_EGF_like: Thromb 59.7 4.7 0.0001 27.2 0.9 18 325-343 11-28 (34)
96 KOG0667 Dual-specificity tyros 59.6 9.3 0.0002 42.7 3.7 28 524-554 193-221 (586)
97 PF08277 PAN_3: PAN-like domai 57.4 20 0.00044 27.9 4.5 32 390-426 18-49 (71)
98 KOG0200 Fibroblast/platelet-de 57.2 9.9 0.00021 43.2 3.6 31 523-553 302-337 (609)
99 KOG0582 Ste20-like serine/thre 56.2 9.8 0.00021 41.0 3.1 27 524-553 33-60 (516)
100 KOG0615 Serine/threonine prote 56.1 10 0.00022 40.4 3.2 29 523-554 178-207 (475)
101 KOG0984 Mitogen-activated prot 54.5 8.6 0.00019 37.5 2.1 28 523-553 52-80 (282)
102 PTZ00267 NIMA-related protein 52.8 13 0.00028 40.8 3.5 28 522-552 72-101 (478)
103 KOG0578 p21-activated serine/t 52.2 12 0.00026 41.2 3.1 29 523-554 279-308 (550)
104 KOG1151 Tousled-like protein k 49.9 3.1 6.7E-05 44.6 -1.8 26 523-551 469-495 (775)
105 PF04478 Mid2: Mid2 like cell 49.8 16 0.00035 33.5 3.0 12 516-527 111-122 (154)
106 KOG4278 Protein tyrosine kinas 49.3 9.4 0.0002 42.8 1.7 32 521-554 271-302 (1157)
107 PRK11138 outer membrane biogen 48.9 82 0.0018 33.4 8.9 50 118-170 303-361 (394)
108 cd01099 PAN_AP_HGF Subfamily o 47.9 36 0.00077 27.5 4.6 34 391-427 24-59 (80)
109 PF13360 PQQ_2: PQQ-like domai 46.3 2.4E+02 0.0051 26.8 11.1 77 89-170 53-148 (238)
110 PHA03210 serine/threonine kina 46.2 8.4 0.00018 42.6 0.8 24 516-539 147-170 (501)
111 PF13360 PQQ_2: PQQ-like domai 46.0 42 0.00091 32.2 5.7 50 118-170 2-62 (238)
112 TIGR03300 assembly_YfgL outer 45.8 77 0.0017 33.2 8.0 56 110-169 67-130 (377)
113 KOG4258 Insulin/growth factor 44.3 16 0.00034 42.3 2.5 20 521-540 998-1017(1025)
114 KOG4279 Serine/threonine prote 43.1 20 0.00044 40.9 3.1 30 522-553 580-609 (1226)
115 PRK10359 lipopolysaccharide co 41.1 19 0.00041 35.7 2.3 34 516-553 30-63 (232)
116 KOG0607 MAP kinase-interacting 40.2 14 0.0003 38.3 1.2 40 508-555 74-114 (463)
117 KOG4649 PQQ (pyrrolo-quinoline 39.5 95 0.0021 31.4 6.7 44 91-136 168-216 (354)
118 PF01436 NHL: NHL repeat; Int 39.0 51 0.0011 20.9 3.3 20 111-132 7-26 (28)
119 KOG0610 Putative serine/threon 38.9 27 0.00058 37.4 3.1 28 524-554 84-112 (459)
120 KOG0585 Ca2+/calmodulin-depend 38.1 29 0.00063 37.8 3.2 30 522-554 102-132 (576)
121 KOG0596 Dual specificity; seri 36.0 13 0.00029 41.1 0.3 27 524-553 368-394 (677)
122 KOG1235 Predicted unusual prot 35.9 34 0.00074 38.2 3.5 32 517-552 162-193 (538)
123 PF14670 FXa_inhibition: Coagu 35.7 12 0.00026 25.6 -0.0 20 325-345 11-31 (36)
124 PRK01723 3-deoxy-D-manno-octul 34.9 45 0.00098 32.9 3.9 28 522-553 36-64 (239)
125 PF15102 TMEM154: TMEM154 prot 34.4 57 0.0012 29.8 4.0 6 508-513 126-131 (146)
126 cd00216 PQQ_DH Dehydrogenases 34.2 1.2E+02 0.0026 33.5 7.4 76 90-170 37-136 (488)
127 TIGR03300 assembly_YfgL outer 32.7 5.8E+02 0.013 26.5 18.3 18 118-135 154-172 (377)
128 PF06172 Cupin_5: Cupin superf 31.6 2.1E+02 0.0045 26.0 7.3 30 261-293 60-89 (139)
129 KOG0579 Ste20-like serine/thre 30.8 8.8 0.00019 43.1 -2.0 20 524-543 39-58 (1187)
130 KOG1219 Uncharacterized conser 30.3 94 0.002 40.5 6.0 26 318-344 3870-3897(4289)
131 KOG4289 Cadherin EGF LAG seven 30.1 35 0.00077 41.8 2.5 48 312-362 1233-1286(2531)
132 cd05845 Ig2_L1-CAM_like Second 30.0 85 0.0018 26.5 4.2 34 89-125 31-64 (95)
133 KOG1024 Receptor-like protein 28.5 86 0.0019 33.6 4.7 23 519-541 286-308 (563)
134 KOG1214 Nidogen and related ba 26.9 49 0.0011 38.3 2.8 31 312-343 828-858 (1289)
135 KOG1033 eIF-2alpha kinase PEK/ 26.6 16 0.00034 40.1 -1.1 34 516-552 48-82 (516)
136 KOG0983 Mitogen-activated prot 25.3 81 0.0018 32.2 3.7 38 507-554 89-127 (391)
137 KOG0664 Nemo-like MAPK-related 25.0 30 0.00065 35.1 0.7 30 521-553 57-87 (449)
138 KOG0616 cAMP-dependent protein 24.5 51 0.0011 34.0 2.2 29 523-554 50-79 (355)
139 KOG0611 Predicted serine/threo 23.6 33 0.00071 36.7 0.7 28 524-554 60-88 (668)
140 KOG4645 MAPKKK (MAP kinase kin 23.2 35 0.00075 41.7 0.8 35 515-552 1233-1268(1509)
141 PHA02887 EGF-like protein; Pro 23.1 87 0.0019 27.5 3.0 30 311-342 83-117 (126)
142 COG0478 RIO-like serine/threon 22.9 75 0.0016 32.5 3.0 26 523-551 97-122 (304)
143 KOG0580 Serine/threonine prote 22.4 50 0.0011 33.0 1.6 23 518-540 23-45 (281)
144 smart00564 PQQ beta-propeller 22.0 1.5E+02 0.0033 18.8 3.5 16 118-133 15-31 (33)
145 PF06247 Plasmod_Pvs28: Plasmo 21.6 33 0.00072 32.6 0.2 36 317-362 49-89 (197)
146 PHA00149 DNA encapsidation pro 21.4 3.1E+02 0.0068 28.2 6.9 40 61-106 234-273 (331)
147 COG1520 FOG: WD40-like repeat 21.3 4.6E+02 0.01 27.3 8.9 77 89-169 85-178 (370)
148 KOG0612 Rho-associated, coiled 20.8 21 0.00046 42.8 -1.5 34 518-554 76-110 (1317)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.95 E-value=2.3e-29 Score=221.03 Aligned_cols=110 Identities=48% Similarity=0.779 Sum_probs=80.5
Q ss_pred CCeEEEEeCCCCCCCC--CccEEEEcccCCccEEEEeCCCCEEEee-cCCCCC-CccEEEEecCCCEEEecCCCCCCcce
Q 008733 91 EGTVTWVANRDAPLSD--RSGVLRINGERNGILVLLNSTNDTVWSS-NSSISA-QKPVAALMESGNLVVKDGKDNNPDNI 166 (555)
Q Consensus 91 ~~~~vW~anr~~p~~~--~~~~l~l~~~~dG~Lvl~~~~~~~~Wss-~~~~~~-~~~~~~L~d~GNlvl~~~~~~~~~~~ 166 (555)
++|+||+|||+.|+.. ...+|.|+. ||||+|++..++++|++ ++.+.. .++.|+|+|+|||||++.. +.+
T Consensus 1 ~~tvvW~an~~~p~~~~s~~~~L~l~~--dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~----~~~ 74 (114)
T PF01453_consen 1 PRTVVWVANRNSPLTSSSGNYTLILQS--DGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSS----GNV 74 (114)
T ss_dssp ---------TTEEEEECETTEEEEEET--TSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETT----SEE
T ss_pred CcccccccccccccccccccccceECC--CCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeec----ceE
Confidence 3689999999999953 238899999 99999999998899999 543222 4799999999999999964 899
Q ss_pred EEeecccCCCccCCCCccceecCCCCceEEEeccCCCCCC
Q 008733 167 LWQSFDYPCDTLLPGMKLGINLGTGLNRFLSSWKSTDDPA 206 (555)
Q Consensus 167 ~WqSFD~PTDTlLpgq~l~~~~~tg~~~~L~Sw~s~~dps 206 (555)
|||||||||||+||+|+|+.+..+|.+..|+||++.+|||
T Consensus 75 lW~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 75 LWQSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp EEESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred EEeecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 9999999999999999999877777667799999999996
No 2
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.94 E-value=7e-27 Score=204.35 Aligned_cols=110 Identities=45% Similarity=1.033 Sum_probs=104.1
Q ss_pred EeeCCCCCcceecccccccCCeEEEEEEecCceEEEEEecCCCCceEEEEEccCCceEEEEeecCCCCeEEEEeeccccc
Q 008733 232 FRAGSWNGLHWTGVPQLQLNPVYTFEYVSNEKEAFYTYNLSNSSVPSRMVINPAGTVQRYTWMERTKTWTLFSRFSGVTL 311 (555)
Q Consensus 232 w~sg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~Ld~dG~lr~y~~~~~~~~W~~~~~~~~~p~ 311 (555)
||+|+|+|..|+++|+|.....+.+.|+.+++|.+++|...+.+.++|++||+||++++|.|++..++|.+.|. +|.
T Consensus 1 wrsG~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~~s~~~r~~ld~~G~l~~~~w~~~~~~W~~~~~---~p~ 77 (110)
T PF00954_consen 1 WRSGPWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSNSSVLSRLVLDSDGQLQRYIWNESTQSWSVFWS---APK 77 (110)
T ss_pred CCccccCCeEECCcccccccceeEEEEEECCCeEEEEEecCCCceEEEEEEeeeeEEEEEEEecCCCcEEEEEE---ecc
Confidence 89999999999999999877788899999999999999988888999999999999999999999999999999 999
Q ss_pred cccccccccCCceeeecCCCCCccccCCCCccCC
Q 008733 312 DQCDSYALCGAYASCNINSNSPECECLQGFVPNS 345 (555)
Q Consensus 312 ~~C~~~~~CG~~giC~~~~~~~~C~C~~GF~~~~ 345 (555)
|+|++|+.||+||+|+.+..+. |+|||||+|++
T Consensus 78 d~Cd~y~~CG~~g~C~~~~~~~-C~Cl~GF~P~n 110 (110)
T PF00954_consen 78 DQCDVYGFCGPNGICNSNNSPK-CSCLPGFEPKN 110 (110)
T ss_pred cCCCCccccCCccEeCCCCCCc-eECCCCcCCCc
Confidence 9999999999999998877888 99999999964
No 3
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.93 E-value=3.1e-25 Score=195.84 Aligned_cols=115 Identities=43% Similarity=0.714 Sum_probs=100.6
Q ss_pred CcccCCCeEEeCCCeEEEEEEcCCCCCceEEEEEEeecCCCeEEEEeCCCCCCCCCccEEEEcccCCccEEEEeCCCCEE
Q 008733 52 QSIKDGETLVSAKESFELGFFSPGNSKSRYLGIWYKKIAEGTVTWVANRDAPLSDRSGVLRINGERNGILVLLNSTNDTV 131 (555)
Q Consensus 52 ~~l~~~~~l~S~~g~F~lgF~~~~~~~~~~l~iw~~~~~~~~~vW~anr~~p~~~~~~~l~l~~~~dG~Lvl~~~~~~~~ 131 (555)
+.|.+|++|+|+++.|++|||.+......+.+|||.+.+ .++||.||++.|.. ..++|.|+. ||+|+|+|.++.++
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~-~~~vW~snt~~~~~-~~~~l~l~~--dGnLvl~~~~g~~v 77 (116)
T cd00028 2 NPLSSGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSS-RTVVWVANRDNPSG-SSCTLTLQS--DGNLVIYDGSGTVV 77 (116)
T ss_pred cCcCCCCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCC-CeEEEECCCCCCCC-CCEEEEEec--CCCeEEEcCCCcEE
Confidence 568899999999999999999987543488999998765 78999999999843 458899999 99999999999999
Q ss_pred EeecCCCCCCccEEEEecCCCEEEecCCCCCCcceEEeecccC
Q 008733 132 WSSNSSISAQKPVAALMESGNLVVKDGKDNNPDNILWQSFDYP 174 (555)
Q Consensus 132 Wss~~~~~~~~~~~~L~d~GNlvl~~~~~~~~~~~~WqSFD~P 174 (555)
|++++.+.....+|+|+||||||||+.+ +.+||||||||
T Consensus 78 W~S~~~~~~~~~~~~L~ddGnlvl~~~~----~~~~W~Sf~~P 116 (116)
T cd00028 78 WSSNTTRVNGNYVLVLLDDGNLVLYDSD----GNFLWQSFDYP 116 (116)
T ss_pred EEecccCCCCceEEEEeCCCCEEEECCC----CCEEEcCCCCC
Confidence 9999754345688999999999999975 78999999999
No 4
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.91 E-value=7.6e-24 Score=186.41 Aligned_cols=113 Identities=45% Similarity=0.752 Sum_probs=99.7
Q ss_pred CcccCCCeEEeCCCeEEEEEEcCCCCCceEEEEEEeecCCCeEEEEeCCCCCCCCCccEEEEcccCCccEEEEeCCCCEE
Q 008733 52 QSIKDGETLVSAKESFELGFFSPGNSKSRYLGIWYKKIAEGTVTWVANRDAPLSDRSGVLRINGERNGILVLLNSTNDTV 131 (555)
Q Consensus 52 ~~l~~~~~l~S~~g~F~lgF~~~~~~~~~~l~iw~~~~~~~~~vW~anr~~p~~~~~~~l~l~~~~dG~Lvl~~~~~~~~ 131 (555)
+.|..|+.|+|+++.|++|||.... ...+.+|||...+ .++||+|||+.|+... +.|.|++ ||+|+|+++++.++
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~-q~dgnlV~~~~~~-~~~vW~snt~~~~~~~-~~l~l~~--dGnLvl~~~~g~~v 76 (114)
T smart00108 2 NTLSSGQTLVSGNSLFELGFFTLIM-QNDYNLILYKSSS-RTVVWVANRDNPVSDS-CTLTLQS--DGNLVLYDGDGRVV 76 (114)
T ss_pred cccCCCCEEecCCCcEeeeccccCC-CCCEEEEEEECCC-CcEEEECCCCCCCCCC-EEEEEeC--CCCEEEEeCCCCEE
Confidence 5678899999999999999999864 3578999998766 7899999999998754 8899999 99999999999999
Q ss_pred EeecCCCCCCccEEEEecCCCEEEecCCCCCCcceEEeeccc
Q 008733 132 WSSNSSISAQKPVAALMESGNLVVKDGKDNNPDNILWQSFDY 173 (555)
Q Consensus 132 Wss~~~~~~~~~~~~L~d~GNlvl~~~~~~~~~~~~WqSFD~ 173 (555)
|+|++..+....+|+|+|+|||||++.. ++++||||||
T Consensus 77 W~S~t~~~~~~~~~~L~ddGnlvl~~~~----~~~~W~Sf~~ 114 (114)
T smart00108 77 WSSNTTGANGNYVLVLLDDGNLVIYDSD----GNFLWQSFDY 114 (114)
T ss_pred EEecccCCCCceEEEEeCCCCEEEECCC----CCEEeCCCCC
Confidence 9999753456788999999999999875 7899999997
No 5
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.55 E-value=4.3e-15 Score=117.41 Aligned_cols=66 Identities=50% Similarity=1.052 Sum_probs=56.2
Q ss_pred CCCCCceEEEecccCCCCcccccccccchHhHHHhhccCCCceeeeeccccCCCceeEeeccccccc
Q 008733 366 CKHGDGFLEHKAVKLPDTRFSWVDKNITLWECKELCSKNCSCTAYANADVRGRGSGCLLWFHDLIDI 432 (555)
Q Consensus 366 C~~~~~f~~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~g~~C~~w~~~l~~~ 432 (555)
|+.+|+|+++++|++|+++...+..+.++++|+++||+||||+||+|.+.. ++++|++|.++|.|+
T Consensus 1 C~~~d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~-~~~~C~lW~~~L~d~ 66 (66)
T PF08276_consen 1 CGSGDGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLS-GGGGCLLWYGDLVDL 66 (66)
T ss_pred CcCCCEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccC-CCCEEEEEcCEeecC
Confidence 545789999999999998776555668999999999999999999997543 467899999999874
No 6
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.38 E-value=8.3e-13 Score=109.13 Aligned_cols=80 Identities=46% Similarity=0.897 Sum_probs=64.3
Q ss_pred CCCCCCC---CceEEEecccCCCCcccccccccchHhHHHhhccCCCceeeeeccccCCCceeEeecccccccccccCCC
Q 008733 363 PLDCKHG---DGFLEHKAVKLPDTRFSWVDKNITLWECKELCSKNCSCTAYANADVRGRGSGCLLWFHDLIDIKELPESG 439 (555)
Q Consensus 363 ~l~C~~~---~~f~~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~g~~C~~w~~~l~~~~~~~~~~ 439 (555)
+++|.+. +.|++++++++|+..+.. ...++++|++.||+||+|.||+|.+ ++++|++|...+.+.+.....+
T Consensus 2 ~~~C~~~~~~~~f~~~~~~~~~~~~~~~--~~~s~~~C~~~Cl~nCsC~a~~~~~---~~~~C~~~~~~~~~~~~~~~~~ 76 (84)
T cd01098 2 PLNCGGDGSTDGFLKLPDVKLPDNASAI--TAISLEECREACLSNCSCTAYAYNN---GSGGCLLWNGLLNNLRSLSSGG 76 (84)
T ss_pred CcccCCCCCCCEEEEeCCeeCCCchhhh--ccCCHHHHHHHHhcCCCcceeeecC---CCCeEEEEeceecceEeecCCC
Confidence 4567653 689999999999876542 5678999999999999999999974 3568999999888876544456
Q ss_pred ceEEEEec
Q 008733 440 QDLFIRMA 447 (555)
Q Consensus 440 ~~~~ikv~ 447 (555)
.++||||+
T Consensus 77 ~~~yiKv~ 84 (84)
T cd01098 77 GTLYLRLA 84 (84)
T ss_pred cEEEEEeC
Confidence 78999985
No 7
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.29 E-value=4e-12 Score=103.98 Aligned_cols=71 Identities=28% Similarity=0.433 Sum_probs=60.7
Q ss_pred CCCCCceEEEecccCCCCcccccccccchHhHHHhhcc---CCCceeeeeccccCCCceeEeecccc-cccccccCCCce
Q 008733 366 CKHGDGFLEHKAVKLPDTRFSWVDKNITLWECKELCSK---NCSCTAYANADVRGRGSGCLLWFHDL-IDIKELPESGQD 441 (555)
Q Consensus 366 C~~~~~f~~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~---nCsC~a~~y~~~~~~g~~C~~w~~~l-~~~~~~~~~~~~ 441 (555)
|..+..|+++.++++|++.. .+.++|++.|++ ||||.||+|.+. +.+|++|.+++ .+++.....+.+
T Consensus 5 ~~~~g~fl~~~~~klpd~~~------~s~~eC~~~Cl~~~~nCsC~Aya~~~~---~~gC~~W~~~l~~d~~~~~~~g~~ 75 (80)
T cd00129 5 CKSAGTTLIKIALKIKTTKA------NTADECANRCEKNGLPFSCKAFVFAKA---RKQCLWFPFNSMSGVRKEFSHGFD 75 (80)
T ss_pred eecCCeEEEeecccCCcccc------cCHHHHHHHHhcCCCCCCceeeeccCC---CCCeEEecCcchhhHHhccCCCce
Confidence 44567899999999998764 478999999999 999999999742 35899999999 998877777899
Q ss_pred EEEE
Q 008733 442 LFIR 445 (555)
Q Consensus 442 ~~ik 445 (555)
+|+|
T Consensus 76 Ly~r 79 (80)
T cd00129 76 LYEN 79 (80)
T ss_pred eEeE
Confidence 9998
No 8
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.86 E-value=2.2e-09 Score=113.09 Aligned_cols=49 Identities=47% Similarity=0.603 Sum_probs=46.1
Q ss_pred ccccccHHHHHHHhcCCCCCCeecCCCCCcEEEEEECCceEEeeEEEEEecC
Q 008733 503 ELPIFDLKIIANATDNFSEKNKLGEGGFGPVYKVTLYYVISLYHFHVKRSSL 554 (555)
Q Consensus 503 ~~~~fs~~eL~~AT~~Fs~~n~IG~GgfG~VYKg~L~~g~~~~~VAVKrL~~ 554 (555)
..+.|+|+||.+||+||+++|+||+||||+||||.|++|+. ||||+++.
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~---vAVK~~~~ 109 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTV---VAVKRLSS 109 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCE---EEEEEecC
Confidence 56789999999999999999999999999999999999988 99999864
No 9
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.81 E-value=2.3e-08 Score=87.84 Aligned_cols=87 Identities=23% Similarity=0.391 Sum_probs=63.3
Q ss_pred EEEEcccCCccEEEEeCC-CCEEEeecCCCC-CCccEEEEecCCCEEEecCCCCCCcceEEeecccCCCccCCCCcccee
Q 008733 110 VLRINGERNGILVLLNST-NDTVWSSNSSIS-AQKPVAALMESGNLVVKDGKDNNPDNILWQSFDYPCDTLLPGMKLGIN 187 (555)
Q Consensus 110 ~l~l~~~~dG~Lvl~~~~-~~~~Wss~~~~~-~~~~~~~L~d~GNlvl~~~~~~~~~~~~WqSFD~PTDTlLpgq~l~~~ 187 (555)
++.++. ||+||++... +.++|++++... ...+.+.|+++|||||++.+ +.++|+|=
T Consensus 23 ~~~~q~--dgnlV~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~----g~~vW~S~---------------- 80 (114)
T smart00108 23 TLIMQN--DYNLILYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGD----GRVVWSSN---------------- 80 (114)
T ss_pred ccCCCC--CEEEEEEECCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCC----CCEEEEec----------------
Confidence 345566 9999999875 579999997432 23478999999999999875 77999971
Q ss_pred cCCCCceEEEeccCCCCCCCcceEEEeCCCCCceEEEecCCeeEEee
Q 008733 188 LGTGLNRFLSSWKSTDDPARGDFTYGLDPRGIPQLVLRKNSIITFRA 234 (555)
Q Consensus 188 ~~tg~~~~L~Sw~s~~dps~G~f~l~l~~~g~~~l~~~~~~~~yw~s 234 (555)
+ ....|.|.+.|+++|+.+++- ..+.+.|.+
T Consensus 81 ---------t------~~~~~~~~~~L~ddGnlvl~~-~~~~~~W~S 111 (114)
T smart00108 81 ---------T------TGANGNYVLVLLDDGNLVIYD-SDGNFLWQS 111 (114)
T ss_pred ---------c------cCCCCceEEEEeCCCCEEEEC-CCCCEEeCC
Confidence 0 023567889999999866543 224577875
No 10
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.76 E-value=5.5e-08 Score=85.75 Aligned_cols=83 Identities=23% Similarity=0.373 Sum_probs=61.8
Q ss_pred CccEEEEeCC-CCEEEeecCCC-CCCccEEEEecCCCEEEecCCCCCCcceEEeecccCCCccCCCCccceecCCCCceE
Q 008733 118 NGILVLLNST-NDTVWSSNSSI-SAQKPVAALMESGNLVVKDGKDNNPDNILWQSFDYPCDTLLPGMKLGINLGTGLNRF 195 (555)
Q Consensus 118 dG~Lvl~~~~-~~~~Wss~~~~-~~~~~~~~L~d~GNlvl~~~~~~~~~~~~WqSFD~PTDTlLpgq~l~~~~~tg~~~~ 195 (555)
||+||+++.. +.++|++++.. ....+.+.|+++|||||++.+ +.++|+|=
T Consensus 30 dgnlv~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~----g~~vW~S~------------------------ 81 (116)
T cd00028 30 DYNLILYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGS----GTVVWSSN------------------------ 81 (116)
T ss_pred eEEEEEEeCCCCeEEEECCCCCCCCCCEEEEEecCCCeEEEcCC----CcEEEEec------------------------
Confidence 8999999765 47999999743 235678999999999999875 78999972
Q ss_pred EEeccCCCCCCCcceEEEeCCCCCceEEEecCCeeEEeeCC
Q 008733 196 LSSWKSTDDPARGDFTYGLDPRGIPQLVLRKNSIITFRAGS 236 (555)
Q Consensus 196 L~Sw~s~~dps~G~f~l~l~~~g~~~l~~~~~~~~yw~sg~ 236 (555)
++ ...+.+.+.|+++|+.+++-. .+.+.|.+..
T Consensus 82 -~~------~~~~~~~~~L~ddGnlvl~~~-~~~~~W~Sf~ 114 (116)
T cd00028 82 -TT------RVNGNYVLVLLDDGNLVLYDS-DGNFLWQSFD 114 (116)
T ss_pred -cc------CCCCceEEEEeCCCCEEEECC-CCCEEEcCCC
Confidence 10 135678999999998665432 3467887653
No 11
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.48 E-value=1.6e-06 Score=76.19 Aligned_cols=100 Identities=25% Similarity=0.431 Sum_probs=69.8
Q ss_pred CeEEeCCCeEEEEEEcCCCCCceEEEEEEeecCCCeEEEEe-CCCCCCCCCccEEEEcccCCccEEEEeCCCCEEEeecC
Q 008733 58 ETLVSAKESFELGFFSPGNSKSRYLGIWYKKIAEGTVTWVA-NRDAPLSDRSGVLRINGERNGILVLLNSTNDTVWSSNS 136 (555)
Q Consensus 58 ~~l~S~~g~F~lgF~~~~~~~~~~l~iw~~~~~~~~~vW~a-nr~~p~~~~~~~l~l~~~~dG~Lvl~~~~~~~~Wss~~ 136 (555)
+.+.+.+|.+.|-|+.+|+ |.| |. ...+++|.. +...... ..+.+.|++ ||||||+|..+.++|+|..
T Consensus 12 ~p~~~~s~~~~L~l~~dGn-----Lvl-~~--~~~~~iWss~~t~~~~~-~~~~~~L~~--~GNlvl~d~~~~~lW~Sf~ 80 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQSDGN-----LVL-YD--SNGSVIWSSNNTSGRGN-SGCYLVLQD--DGNLVLYDSSGNVLWQSFD 80 (114)
T ss_dssp EEEEECETTEEEEEETTSE-----EEE-EE--TTTEEEEE--S-TTSS--SSEEEEEET--TSEEEEEETTSEEEEESTT
T ss_pred cccccccccccceECCCCe-----EEE-Ec--CCCCEEEEecccCCccc-cCeEEEEeC--CCCEEEEeecceEEEeecC
Confidence 4566656999999999886 333 32 235789999 5454432 348899999 9999999998999999953
Q ss_pred CCCCCccEEEEec--CCCEEEecCCCCCCcceEEeecccCC
Q 008733 137 SISAQKPVAALME--SGNLVVKDGKDNNPDNILWQSFDYPC 175 (555)
Q Consensus 137 ~~~~~~~~~~L~d--~GNlvl~~~~~~~~~~~~WqSFD~PT 175 (555)
....+.+..++ +||++ +... ..+.|.|=+.|+
T Consensus 81 --~ptdt~L~~q~l~~~~~~-~~~~----~~~sw~s~~dps 114 (114)
T PF01453_consen 81 --YPTDTLLPGQKLGDGNVT-GKND----SLTSWSSNTDPS 114 (114)
T ss_dssp --SSS-EEEEEET--TSEEE-EEST----SSEEEESS----
T ss_pred --CCccEEEeccCcccCCCc-cccc----eEEeECCCCCCC
Confidence 34567788888 99999 7542 579999877663
No 12
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.35 E-value=1.1e-06 Score=70.80 Aligned_cols=72 Identities=33% Similarity=0.629 Sum_probs=54.1
Q ss_pred CceEEEecccCCCCcccccccccchHhHHHhhcc-CCCceeeeeccccCCCceeEeec-ccccccccccCCCceEEEE
Q 008733 370 DGFLEHKAVKLPDTRFSWVDKNITLWECKELCSK-NCSCTAYANADVRGRGSGCLLWF-HDLIDIKELPESGQDLFIR 445 (555)
Q Consensus 370 ~~f~~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~-nCsC~a~~y~~~~~~g~~C~~w~-~~l~~~~~~~~~~~~~~ik 445 (555)
..|..++++.+++..... ....++++|++.|++ +|+|.||.|.. ++.+|.+|. +.+.+.......+.+.|.|
T Consensus 4 ~~f~~~~~~~l~~~~~~~-~~~~s~~~C~~~C~~~~~~C~s~~y~~---~~~~C~l~~~~~~~~~~~~~~~~~~~y~~ 77 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIV-ISVASLEECASKCLNSNCSCRSFTYNN---GTKGCLLWSESSLGDARLFPSGGVDLYEK 77 (78)
T ss_pred ceeEEecCccCCCCccee-EcCCCHHHHHHHhCCCCCceEEEEEcC---CCCEEEEeeCCccccceecccCCceeEEe
Confidence 568899999998655432 346689999999999 99999999974 345899999 6666665444445566665
No 13
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.05 E-value=0.0012 Score=78.81 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=33.7
Q ss_pred ccHHHHHHHhcCCCCCCeecCCCCCcEEEEEE-CCceEEeeEEEEEecC
Q 008733 507 FDLKIIANATDNFSEKNKLGEGGFGPVYKVTL-YYVISLYHFHVKRSSL 554 (555)
Q Consensus 507 fs~~eL~~AT~~Fs~~n~IG~GgfG~VYKg~L-~~g~~~~~VAVKrL~~ 554 (555)
++++++.. .|++.++||+|+||.||||+. .+|.. ||||++..
T Consensus 683 ~~~~~~~~---~~~~~~~ig~G~~g~Vy~~~~~~~~~~---vavK~~~~ 725 (968)
T PLN00113 683 ITINDILS---SLKEENVISRGKKGASYKGKSIKNGMQ---FVVKEIND 725 (968)
T ss_pred hhHHHHHh---hCCcccEEccCCCeeEEEEEECCCCcE---EEEEEccC
Confidence 55555544 567888999999999999997 57788 99999853
No 14
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=97.02 E-value=0.00067 Score=54.48 Aligned_cols=50 Identities=18% Similarity=0.360 Sum_probs=36.8
Q ss_pred EEecccCCCCcccccccccchHhHHHhhccCCCceeeeeccccCCCceeEeecc
Q 008733 374 EHKAVKLPDTRFSWVDKNITLWECKELCSKNCSCTAYANADVRGRGSGCLLWFH 427 (555)
Q Consensus 374 ~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~g~~C~~w~~ 427 (555)
.+++++++..+.... ...+.++|++.|+.+|+|.||.|.. +...|+++..
T Consensus 8 ~~~~~~~~g~d~~~~-~~~s~~~Cq~~C~~~~~C~afT~~~---~~~~C~lk~~ 57 (73)
T cd01100 8 QGSNVDFRGGDLSTV-FASSAEQCQAACTADPGCLAFTYNT---KSKKCFLKSS 57 (73)
T ss_pred ccCCCccccCCccee-ecCCHHHHHHHcCCCCCceEEEEEC---CCCeEEcccC
Confidence 335677776655433 2458899999999999999999974 2347998665
No 15
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=96.78 E-value=0.0012 Score=69.86 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=23.2
Q ss_pred eecCCCCCcEEEEEECCceEEeeEEEEEec
Q 008733 524 KLGEGGFGPVYKVTLYYVISLYHFHVKRSS 553 (555)
Q Consensus 524 ~IG~GgfG~VYKg~L~~g~~~~~VAVKrL~ 553 (555)
+||+|+||.||||.|.+ +. ||||.+.
T Consensus 217 li~~Grfg~V~KaqL~~-~~---VAVKifp 242 (534)
T KOG3653|consen 217 LIGRGRFGCVWKAQLDN-RL---VAVKIFP 242 (534)
T ss_pred HhhcCccceeehhhccC-ce---eEEEecC
Confidence 89999999999999966 66 9999863
No 16
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=96.32 E-value=0.0026 Score=70.08 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=29.8
Q ss_pred HhcCCCCCCeecCCCCCcEEEEEE-----------------CCceEEeeEEEEEec
Q 008733 515 ATDNFSEKNKLGEGGFGPVYKVTL-----------------YYVISLYHFHVKRSS 553 (555)
Q Consensus 515 AT~~Fs~~n~IG~GgfG~VYKg~L-----------------~~g~~~~~VAVKrL~ 553 (555)
.+++|...++||+|+||+||||.+ .+++. ||||++.
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~---VAVK~l~ 195 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRR---VVLKRVN 195 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCce---EEEEEec
Confidence 366899999999999999999975 23456 9999974
No 17
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=95.59 E-value=0.014 Score=66.02 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=26.4
Q ss_pred CCCeecCCCCCcEEEEEE-CCceEEe-eEEEEEecC
Q 008733 521 EKNKLGEGGFGPVYKVTL-YYVISLY-HFHVKRSSL 554 (555)
Q Consensus 521 ~~n~IG~GgfG~VYKg~L-~~g~~~~-~VAVKrL~~ 554 (555)
+..+||+|+||+||||+. |.|+.++ +||+|.|..
T Consensus 700 k~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~ 735 (1177)
T KOG1025|consen 700 KDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIE 735 (1177)
T ss_pred hhceeccccceeEEeeeEecCCceecceeEEEEeec
Confidence 346999999999999986 6665433 599998754
No 18
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=95.50 E-value=0.0092 Score=65.20 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=27.8
Q ss_pred cccHHHHHHHhcCCCCCCeecCCCCCcEEEEEECCceEEeeEEEEEec
Q 008733 506 IFDLKIIANATDNFSEKNKLGEGGFGPVYKVTLYYVISLYHFHVKRSS 553 (555)
Q Consensus 506 ~fs~~eL~~AT~~Fs~~n~IG~GgfG~VYKg~L~~g~~~~~VAVKrL~ 553 (555)
.+.++|++-+ ..||+|+||+||||...+ . ||||.|+
T Consensus 388 eIp~~ev~l~-------~rIGsGsFGtV~Rg~whG--d---VAVK~Ln 423 (678)
T KOG0193|consen 388 EIPPEEVLLG-------ERIGSGSFGTVYRGRWHG--D---VAVKLLN 423 (678)
T ss_pred ccCHHHhhcc-------ceeccccccceeeccccc--c---eEEEEEe
Confidence 3455665543 389999999999999854 3 8999985
No 19
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=94.99 E-value=0.016 Score=65.14 Aligned_cols=36 Identities=39% Similarity=0.652 Sum_probs=30.8
Q ss_pred HhcCCCCCCeecCCCCCcEEEEEECC-----ceEEeeEEEEEec
Q 008733 515 ATDNFSEKNKLGEGGFGPVYKVTLYY-----VISLYHFHVKRSS 553 (555)
Q Consensus 515 AT~~Fs~~n~IG~GgfG~VYKg~L~~-----g~~~~~VAVKrL~ 553 (555)
..++|...++||+|+||.||+|+..+ +.. ||||++.
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~---vAvK~~~ 170 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGK---YVLKKAT 170 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcE---EEEEEec
Confidence 56778888899999999999999865 467 9999875
No 20
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=94.33 E-value=0.026 Score=58.35 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=24.5
Q ss_pred CCCeecCCCCCcEEEEEECCc-eEEeeEEEEEe
Q 008733 521 EKNKLGEGGFGPVYKVTLYYV-ISLYHFHVKRS 552 (555)
Q Consensus 521 ~~n~IG~GgfG~VYKg~L~~g-~~~~~VAVKrL 552 (555)
+.+++|+|+||.||+|++... +. |||||.
T Consensus 28 ~~~liG~GsFg~Vyq~~~~e~~~~---vAIKKv 57 (364)
T KOG0658|consen 28 AVRLIGSGSFGVVYQAKLRETEEE---VAIKKV 57 (364)
T ss_pred eeEEEeecccceEEEEEEcCCCce---eEEEEe
Confidence 346999999999999999654 55 999986
No 21
>PTZ00284 protein kinase; Provisional
Probab=93.63 E-value=0.031 Score=61.04 Aligned_cols=42 Identities=29% Similarity=0.166 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCCCCCeecCCCCCcEEEEEEC-CceEEeeEEEEEec
Q 008733 509 LKIIANATDNFSEKNKLGEGGFGPVYKVTLY-YVISLYHFHVKRSS 553 (555)
Q Consensus 509 ~~eL~~AT~~Fs~~n~IG~GgfG~VYKg~L~-~g~~~~~VAVKrL~ 553 (555)
.+++..+++.|...++||+|+||+||++... .++. ||||++.
T Consensus 121 ~~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~---vAvK~i~ 163 (467)
T PTZ00284 121 GEDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEY---CAVKIVR 163 (467)
T ss_pred CCccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeE---EEEEEEe
Confidence 3445556677777789999999999999875 4666 9999874
No 22
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=92.25 E-value=0.15 Score=57.69 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=33.3
Q ss_pred cccHHHHHHHhcCCCC---------CCeecCCCCCcEEEEEEC--CceEEeeEEEEEec
Q 008733 506 IFDLKIIANATDNFSE---------KNKLGEGGFGPVYKVTLY--YVISLYHFHVKRSS 553 (555)
Q Consensus 506 ~fs~~eL~~AT~~Fs~---------~n~IG~GgfG~VYKg~L~--~g~~~~~VAVKrL~ 553 (555)
.++|+|=-.|...|.. +.+||.|-||-||+|.|. +.++ ..||||-|+
T Consensus 609 P~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre-~~VAIKTLK 666 (996)
T KOG0196|consen 609 PHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKRE-ITVAIKTLK 666 (996)
T ss_pred CccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcc-eeEEEeeec
Confidence 4677666555555543 368999999999999994 3222 239999885
No 23
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=91.40 E-value=0.13 Score=52.89 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=24.5
Q ss_pred CCCeecCCCCCcEEEEEECC-ceEEeeEEEEEec
Q 008733 521 EKNKLGEGGFGPVYKVTLYY-VISLYHFHVKRSS 553 (555)
Q Consensus 521 ~~n~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL~ 553 (555)
.-|+|++|.||.||||.=.. .+. ||.||+.
T Consensus 80 ~lnrI~EGtyGiVYRakdk~t~eI---VALKr~k 110 (419)
T KOG0663|consen 80 KLNRIEEGTYGVVYRAKDKKTDEI---VALKRLK 110 (419)
T ss_pred HHhhcccCcceeEEEeccCCccee---EEeeecc
Confidence 34699999999999999643 455 9999984
No 24
>PTZ00036 glycogen synthase kinase; Provisional
Probab=91.05 E-value=0.15 Score=55.45 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=27.6
Q ss_pred cCCCCCCeecCCCCCcEEEEEEC-CceEEeeEEEEEec
Q 008733 517 DNFSEKNKLGEGGFGPVYKVTLY-YVISLYHFHVKRSS 553 (555)
Q Consensus 517 ~~Fs~~n~IG~GgfG~VYKg~L~-~g~~~~~VAVKrL~ 553 (555)
+.|.-.++||+|+||.||+|+.. .++. ||||++.
T Consensus 66 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~~---vAiK~i~ 100 (440)
T PTZ00036 66 KSYKLGNIIGNGSFGVVYEAICIDTSEK---VAIKKVL 100 (440)
T ss_pred CeEEEeEEEEeCCCEEEEEEEECCCCCE---EEEEEEe
Confidence 34555679999999999999975 4677 9999874
No 25
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=90.99 E-value=0.16 Score=53.69 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=24.3
Q ss_pred CCCCCeecCCCCCcEEEEEE------CCceEEeeEEEEEec
Q 008733 519 FSEKNKLGEGGFGPVYKVTL------YYVISLYHFHVKRSS 553 (555)
Q Consensus 519 Fs~~n~IG~GgfG~VYKg~L------~~g~~~~~VAVKrL~ 553 (555)
|.-..+||+|+||.||+|+. ..+.. ||||++.
T Consensus 37 ~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~---vavK~l~ 74 (375)
T cd05104 37 LSFGKTLGAGAFGKVVEATAYGLFKSDAAMT---VAVKMLK 74 (375)
T ss_pred eehhheecCCccceEEEEEEeccccCcccee---EEEEecc
Confidence 33345999999999999974 23446 9999985
No 26
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=90.92 E-value=0.2 Score=53.03 Aligned_cols=29 Identities=38% Similarity=0.352 Sum_probs=25.3
Q ss_pred CeecCCCCCcEEEEEECCceEEeeEEEEEecC
Q 008733 523 NKLGEGGFGPVYKVTLYYVISLYHFHVKRSSL 554 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L~~g~~~~~VAVKrL~~ 554 (555)
..||+|+||+||||...+-.. ||||++..
T Consensus 47 ~~iG~G~~g~V~~~~~~g~~~---vavK~~~~ 75 (362)
T KOG0192|consen 47 EVLGSGSFGTVYKGKWRGTDV---VAVKIISD 75 (362)
T ss_pred hhcccCCceeEEEEEeCCcee---EEEEEecc
Confidence 369999999999999987777 99999863
No 27
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=90.49 E-value=0.12 Score=57.13 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=28.0
Q ss_pred hcCCCCCCeecCCCCCcEEEEEE-CCceEEeeEEEEEec
Q 008733 516 TDNFSEKNKLGEGGFGPVYKVTL-YYVISLYHFHVKRSS 553 (555)
Q Consensus 516 T~~Fs~~n~IG~GgfG~VYKg~L-~~g~~~~~VAVKrL~ 553 (555)
.+.|.-.++||+|+||+||++.. .+|+. ||||++.
T Consensus 31 ~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~---vAvK~i~ 66 (496)
T PTZ00283 31 AKKYWISRVLGSGATGTVLCAKRVSDGEP---FAVKVVD 66 (496)
T ss_pred CCCEEEEEEEecCCCEEEEEEEEcCCCCE---EEEEEEe
Confidence 34555557999999999999985 46788 9999874
No 28
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=90.38 E-value=0.16 Score=54.99 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=28.2
Q ss_pred CCCCCeecCCCCCcEEEEEEC-CceEEeeEEEEEecCC
Q 008733 519 FSEKNKLGEGGFGPVYKVTLY-YVISLYHFHVKRSSLL 555 (555)
Q Consensus 519 Fs~~n~IG~GgfG~VYKg~L~-~g~~~~~VAVKrL~~~ 555 (555)
|.+ ..||+|-||+||-|+-. .|+. ||||.++++
T Consensus 567 f~d-evLGSGQFG~VYgg~hRktGrd---VAvKvIdKl 600 (888)
T KOG4236|consen 567 FAD-EVLGSGQFGTVYGGKHRKTGRD---VAVKVIDKL 600 (888)
T ss_pred hhH-hhccCCcceeeecceecccCce---eeeeeeecc
Confidence 554 69999999999999974 6888 999999874
No 29
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=90.34 E-value=0.074 Score=62.63 Aligned_cols=33 Identities=36% Similarity=0.583 Sum_probs=27.4
Q ss_pred cCCCCCCeecCCCCCcEEEEEEC-CceEEeeEEEEEe
Q 008733 517 DNFSEKNKLGEGGFGPVYKVTLY-YVISLYHFHVKRS 552 (555)
Q Consensus 517 ~~Fs~~n~IG~GgfG~VYKg~L~-~g~~~~~VAVKrL 552 (555)
+.|-+-..||+||||.|||+.-. ||+. .||||+
T Consensus 479 ~DFEEL~lLGkGGFG~VvkVRNKlDGr~---YAIKKI 512 (1351)
T KOG1035|consen 479 NDFEELELLGKGGFGSVVKVRNKLDGRE---YAIKKI 512 (1351)
T ss_pred hhhHHHHHhcCCCCceEEEEeecccchh---hhhhhc
Confidence 34555569999999999998754 8999 999997
No 30
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=90.18 E-value=0.15 Score=50.85 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=31.9
Q ss_pred ccccccHHHHHHHhcCCCCCCeecCCCCCcEEEEEE-CCceEEeeEEEEEec
Q 008733 503 ELPIFDLKIIANATDNFSEKNKLGEGGFGPVYKVTL-YYVISLYHFHVKRSS 553 (555)
Q Consensus 503 ~~~~fs~~eL~~AT~~Fs~~n~IG~GgfG~VYKg~L-~~g~~~~~VAVKrL~ 553 (555)
+...|+-+.|+.-- .||+|.||+|+|-.- +.|.. +||||+.
T Consensus 57 ~~~~F~~~~Lqdlg-------~iG~G~fG~V~KM~hk~sg~~---mAVKrIr 98 (361)
T KOG1006|consen 57 HLHTFTSDNLQDLG-------EIGNGAFGTVNKMLHKPSGKL---MAVKRIR 98 (361)
T ss_pred cccccccchHHHHH-------HhcCCcchhhhhhhcCccCcE---EEEEEee
Confidence 35567777666533 799999999999776 56778 9999985
No 31
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=89.79 E-value=0.14 Score=55.26 Aligned_cols=27 Identities=37% Similarity=0.562 Sum_probs=23.6
Q ss_pred eecCCCCCcEEEEE-ECCceEEeeEEEEEec
Q 008733 524 KLGEGGFGPVYKVT-LYYVISLYHFHVKRSS 553 (555)
Q Consensus 524 ~IG~GgfG~VYKg~-L~~g~~~~~VAVKrL~ 553 (555)
+||+|.||.|||+. +..|.. ||.||+.
T Consensus 124 kIGeGTyg~VYkAr~~~tgki---vALKKvr 151 (560)
T KOG0600|consen 124 KIGEGTYGQVYKARDLETGKI---VALKKVR 151 (560)
T ss_pred HhcCcchhheeEeeecccCcE---EEEEEee
Confidence 89999999999998 456778 9999973
No 32
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=89.49 E-value=0.26 Score=52.21 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=24.4
Q ss_pred CCCCCeecCCCCCcEEEEEE------CCceEEeeEEEEEec
Q 008733 519 FSEKNKLGEGGFGPVYKVTL------YYVISLYHFHVKRSS 553 (555)
Q Consensus 519 Fs~~n~IG~GgfG~VYKg~L------~~g~~~~~VAVKrL~ 553 (555)
|.-.++||+|+||.||+++. .++.. ||||++.
T Consensus 40 ~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~---vavK~~~ 77 (374)
T cd05106 40 LQFGKTLGAGAFGKVVEATAFGLGKEDNVLR---VAVKMLK 77 (374)
T ss_pred ceehheecCCCcccEEEEEEecCCcccccce---eEEEecc
Confidence 44456999999999999873 23346 9999985
No 33
>smart00090 RIO RIO-like kinase.
Probab=89.37 E-value=0.35 Score=48.02 Aligned_cols=28 Identities=18% Similarity=-0.051 Sum_probs=25.1
Q ss_pred CeecCCCCCcEEEEE--ECCceEEeeEEEEEec
Q 008733 523 NKLGEGGFGPVYKVT--LYYVISLYHFHVKRSS 553 (555)
Q Consensus 523 n~IG~GgfG~VYKg~--L~~g~~~~~VAVKrL~ 553 (555)
..||+|+||.||+|+ ..+|+. ||||.+.
T Consensus 34 ~~Lg~G~~g~Vy~a~~~~~~g~~---vaiK~~~ 63 (237)
T smart00090 34 GCISTGKEANVYHALDFDGSGKE---RAVKIYR 63 (237)
T ss_pred CeeccCcceeEEEEEecCCCCcE---EEEEEEE
Confidence 489999999999998 778998 9999864
No 34
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=89.09 E-value=0.38 Score=51.54 Aligned_cols=29 Identities=38% Similarity=0.488 Sum_probs=23.0
Q ss_pred CCeecCCCCCcEEEEEEC------CceEEeeEEEEEec
Q 008733 522 KNKLGEGGFGPVYKVTLY------YVISLYHFHVKRSS 553 (555)
Q Consensus 522 ~n~IG~GgfG~VYKg~L~------~g~~~~~VAVKrL~ 553 (555)
..+||+|+||.||+|+.. .+.. ||||++.
T Consensus 42 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~---vavK~l~ 76 (400)
T cd05105 42 GRILGSGAFGKVVEGTAYGLSRSQPVMK---VAVKMLK 76 (400)
T ss_pred hheecCCCCceEEEEEEcccCCCCCceE---EEEEecC
Confidence 358999999999999852 1345 9999985
No 35
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=89.00 E-value=0.48 Score=37.68 Aligned_cols=54 Identities=20% Similarity=0.383 Sum_probs=39.5
Q ss_pred ceEEEecccCCCCcccccccccchHhHHHhhccCCC-ceeeeeccccCCCceeEeeccc
Q 008733 371 GFLEHKAVKLPDTRFSWVDKNITLWECKELCSKNCS-CTAYANADVRGRGSGCLLWFHD 428 (555)
Q Consensus 371 ~f~~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~nCs-C~a~~y~~~~~~g~~C~~w~~~ 428 (555)
.|..+++..+........ ...++++|.+.|+.+=. |.+|.|.. ....|.+....
T Consensus 3 ~f~~~~~~~l~~~~~~~~-~v~s~~~C~~~C~~~~~~C~s~~y~~---~~~~C~L~~~~ 57 (79)
T PF00024_consen 3 AFERIPGYRLSGHSIKEI-NVPSLEECAQLCLNEPRRCKSFNYDP---SSKTCYLSSSD 57 (79)
T ss_dssp TEEEEEEEEEESCEEEEE-EESSHHHHHHHHHHSTT-ESEEEEET---TTTEEEEECSS
T ss_pred CeEEECCEEEeCCcceEE-cCCCHHHHHhhcCcCcccCCeEEEEC---CCCEEEEcCCC
Confidence 477777777766444333 34489999999999999 99999974 24579986543
No 36
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=88.98 E-value=0.21 Score=52.75 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCCCCeecCCCCCcEEEEEECC-ceEEeeEEEEEec
Q 008733 509 LKIIANATDNFSEKNKLGEGGFGPVYKVTLYY-VISLYHFHVKRSS 553 (555)
Q Consensus 509 ~~eL~~AT~~Fs~~n~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL~ 553 (555)
+.++..+.++|....+||+|+||.||++.... ++. +|+|.+.
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~---~aiK~i~ 77 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKV---YAMKLLS 77 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcE---EEEEEEE
Confidence 44555566778878899999999999999864 556 9999874
No 37
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=88.79 E-value=0.38 Score=52.33 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=28.5
Q ss_pred cCCCCCCeecCCCCCcEEEEEECCceEEeeEEEEEec
Q 008733 517 DNFSEKNKLGEGGFGPVYKVTLYYVISLYHFHVKRSS 553 (555)
Q Consensus 517 ~~Fs~~n~IG~GgfG~VYKg~L~~g~~~~~VAVKrL~ 553 (555)
..|.+ +.||.|++|.||||++.+|+. ||||...
T Consensus 118 ~~fd~-~plasaSigQVh~A~l~~G~~---VaVKv~r 150 (437)
T TIGR01982 118 AEFEE-KPLAAASIAQVHRARLVDGKE---VAVKVLR 150 (437)
T ss_pred hhCCC-cceeeeehhheEEEEecCCCE---EEEEeeC
Confidence 34654 689999999999999999999 9999863
No 38
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=88.64 E-value=0.16 Score=53.56 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=28.3
Q ss_pred hcCCCCCCeecCCCCCcEEEEEEC-CceEEeeEEEEEec
Q 008733 516 TDNFSEKNKLGEGGFGPVYKVTLY-YVISLYHFHVKRSS 553 (555)
Q Consensus 516 T~~Fs~~n~IG~GgfG~VYKg~L~-~g~~~~~VAVKrL~ 553 (555)
.++|....+||+|+||.||++... .+.. +|||++.
T Consensus 42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~---~aiK~~~ 77 (370)
T cd05596 42 AEDFDVIKVIGRGAFGEVQLVRHKSSKQV---YAMKLLS 77 (370)
T ss_pred HHHcEEEEEEeeCCCEEEEEEEECCCCCE---EEEEEEE
Confidence 345666679999999999999875 4667 9999875
No 39
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=88.51 E-value=0.35 Score=51.88 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=24.1
Q ss_pred CCeecCCCCCcEEEEEECC------ceEEeeEEEEEecC
Q 008733 522 KNKLGEGGFGPVYKVTLYY------VISLYHFHVKRSSL 554 (555)
Q Consensus 522 ~n~IG~GgfG~VYKg~L~~------g~~~~~VAVKrL~~ 554 (555)
..+||+|+||.||+|...+ +.. ||||++..
T Consensus 42 ~~~lG~G~fG~Vy~~~~~~~~~~~~~~~---vavK~l~~ 77 (401)
T cd05107 42 GRTLGSGAFGRVVEATAHGLSHSQSTMK---VAVKMLKS 77 (401)
T ss_pred hhhccCCCceeEEEEEEcCCCCCCCceE---EEEEecCC
Confidence 3599999999999998642 346 99999863
No 40
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=88.34 E-value=0.24 Score=52.31 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=29.3
Q ss_pred HHhcCCCCCCeecCCCCCcEEEEEECC-ceEEeeEEEEEec
Q 008733 514 NATDNFSEKNKLGEGGFGPVYKVTLYY-VISLYHFHVKRSS 553 (555)
Q Consensus 514 ~AT~~Fs~~n~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL~ 553 (555)
...++|....+||+|+||.||++.... ++. +|+|.+.
T Consensus 40 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~---~aiK~~~ 77 (370)
T cd05621 40 MKAEDYDVVKVIGRGAFGEVQLVRHKSSQKV---YAMKLLS 77 (370)
T ss_pred CCHHHCeEEEEEEecCCeEEEEEEECCCCCE---EEEEEEE
Confidence 334556666799999999999999864 566 9999875
No 41
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=88.22 E-value=0.36 Score=50.45 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=24.2
Q ss_pred CeecCCCCCcEEEEEEC-CceEEeeEEEEEec
Q 008733 523 NKLGEGGFGPVYKVTLY-YVISLYHFHVKRSS 553 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L~-~g~~~~~VAVKrL~ 553 (555)
++||+|+||.||+|+.. +|+. ||||.+.
T Consensus 80 ~~lg~G~~g~V~~~~~~~~~~~---vaiK~~~ 108 (353)
T PLN00034 80 NRIGSGAGGTVYKVIHRPTGRL---YALKVIY 108 (353)
T ss_pred hhccCCCCeEEEEEEECCCCCE---EEEEEEe
Confidence 48999999999999875 5777 9999874
No 42
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=88.01 E-value=0.73 Score=37.60 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=36.9
Q ss_pred EecccCCCCcccccccccchHhHHHhhccCCCceeeeeccccCCCceeEeecc
Q 008733 375 HKAVKLPDTRFSWVDKNITLWECKELCSKNCSCTAYANADVRGRGSGCLLWFH 427 (555)
Q Consensus 375 l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~g~~C~~w~~ 427 (555)
..+++++..+.... ...+.++|++.|..+=.|.+|.|.........|+++..
T Consensus 6 ~~~~df~G~Dl~~~-~~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 6 YKNVDFRGSDINTV-YVPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred ccCccccCceeeee-ecCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCcC
Confidence 35677777666443 35589999999999999999999753222227887543
No 43
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=87.65 E-value=0.42 Score=52.09 Aligned_cols=30 Identities=40% Similarity=0.546 Sum_probs=22.9
Q ss_pred CeecCCCCCcEEEEEECCc---eEEeeEEEEEec
Q 008733 523 NKLGEGGFGPVYKVTLYYV---ISLYHFHVKRSS 553 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L~~g---~~~~~VAVKrL~ 553 (555)
.+||+|.||.||+|.|.-+ .. ..||||...
T Consensus 163 kkLGeGaFGeV~~G~l~~~~~~~~-~~VAvK~~k 195 (474)
T KOG0194|consen 163 KKLGEGAFGEVFKGKLKLKNGFKV-VPVAVKTTK 195 (474)
T ss_pred ceeecccccEEEEEEEEecCCcee-eeeEEEeec
Confidence 4999999999999999543 12 127999865
No 44
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=86.98 E-value=0.23 Score=35.17 Aligned_cols=31 Identities=23% Similarity=0.597 Sum_probs=24.1
Q ss_pred cccccc-cccCCceeeecC-CCCCccccCCCCcc
Q 008733 312 DQCDSY-ALCGAYASCNIN-SNSPECECLQGFVP 343 (555)
Q Consensus 312 ~~C~~~-~~CG~~giC~~~-~~~~~C~C~~GF~~ 343 (555)
|+|... ..|..++.|... ++.. |.|++||+.
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~-C~C~~Gy~~ 35 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYS-CSCPPGYEL 35 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEE-EEESTTEEE
T ss_pred cccCCCCCcCCCCCEEEcCCCCEE-eeCCCCcEE
Confidence 577774 489999999865 3445 999999984
No 45
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=86.52 E-value=0.39 Score=50.07 Aligned_cols=32 Identities=31% Similarity=0.374 Sum_probs=25.2
Q ss_pred CCCCCeecCCCCCcEEEEEECCc--eEEeeEEEEEec
Q 008733 519 FSEKNKLGEGGFGPVYKVTLYYV--ISLYHFHVKRSS 553 (555)
Q Consensus 519 Fs~~n~IG~GgfG~VYKg~L~~g--~~~~~VAVKrL~ 553 (555)
|.-..+||+|+||.||+|...+. .. ||||++.
T Consensus 32 y~~~~~ig~G~~g~Vy~a~~~~~~~~~---vavK~~~ 65 (340)
T PTZ00426 32 FNFIRTLGTGSFGRVILATYKNEDFPP---VAIKRFE 65 (340)
T ss_pred cEEEEEEeecCCeEEEEEEEECCCCeE---EEEEEEE
Confidence 44456999999999999986543 46 9999874
No 46
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.33 E-value=0.15 Score=58.00 Aligned_cols=31 Identities=32% Similarity=0.388 Sum_probs=24.6
Q ss_pred CeecCCCCCcEEEEEECC----ceEEeeEEEEEecC
Q 008733 523 NKLGEGGFGPVYKVTLYY----VISLYHFHVKRSSL 554 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L~~----g~~~~~VAVKrL~~ 554 (555)
.+||+|.||.||+|+.++ +.. +.||||.|++
T Consensus 492 ~eLGegaFGkVf~a~~~~l~p~~~~-~lVAVK~LKd 526 (774)
T KOG1026|consen 492 EELGEGAFGKVFLAEAYGLLPGQDE-QLVAVKALKD 526 (774)
T ss_pred hhhcCchhhhhhhhhccCCCCCccc-eehhHhhhcc
Confidence 399999999999999854 222 4599999864
No 47
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=86.27 E-value=0.56 Score=49.17 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=27.5
Q ss_pred cCCCCCCeecCCCCCcEEEEEEC-CceEEeeEEEEEec
Q 008733 517 DNFSEKNKLGEGGFGPVYKVTLY-YVISLYHFHVKRSS 553 (555)
Q Consensus 517 ~~Fs~~n~IG~GgfG~VYKg~L~-~g~~~~~VAVKrL~ 553 (555)
+.|....+||+|+||.||++.-. .++. ||||++.
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~---vaiK~~~ 58 (364)
T cd07875 24 KRYQNLKPIGSGAQGIVCAAYDAILERN---VAIKKLS 58 (364)
T ss_pred cceeEEEEeecCCCeEEEEEEECCCCcE---EEEEEeC
Confidence 45655679999999999999864 4667 9999985
No 48
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=86.09 E-value=0.59 Score=55.15 Aligned_cols=32 Identities=34% Similarity=0.359 Sum_probs=24.9
Q ss_pred CeecCCCCCcEEEEEECC--ce-EEeeEEEEEecC
Q 008733 523 NKLGEGGFGPVYKVTLYY--VI-SLYHFHVKRSSL 554 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L~~--g~-~~~~VAVKrL~~ 554 (555)
..||+|.||.||+|.+.+ |. .+..||||+|.+
T Consensus 698 ~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~ 732 (1025)
T KOG1095|consen 698 RVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKR 732 (1025)
T ss_pred eeeccccccceEEEEEecCCCCccceEEEEEeccc
Confidence 589999999999999854 32 123499999976
No 49
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=85.61 E-value=0.62 Score=47.72 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=26.4
Q ss_pred CCCCCeecCCCCCcEEEEEEC-CceEEeeEEEEEec
Q 008733 519 FSEKNKLGEGGFGPVYKVTLY-YVISLYHFHVKRSS 553 (555)
Q Consensus 519 Fs~~n~IG~GgfG~VYKg~L~-~g~~~~~VAVKrL~ 553 (555)
|...++||+|+||.||+|... ++.. ||||++.
T Consensus 27 f~~~~~lg~G~~~~v~~~~~~~~~~~---valK~~~ 59 (317)
T cd06635 27 FTDLREIGHGSFGAVYFARDVRTNEV---VAIKKMS 59 (317)
T ss_pred hhhhheeccCCCeEEEEEEEcCCCcE---EEEEEEe
Confidence 445569999999999999975 5667 9999875
No 50
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=85.60 E-value=0.63 Score=50.60 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=28.2
Q ss_pred cCCCCCCeecCCCCCcEEEEEECC-ceEEeeEEEEEecC
Q 008733 517 DNFSEKNKLGEGGFGPVYKVTLYY-VISLYHFHVKRSSL 554 (555)
Q Consensus 517 ~~Fs~~n~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL~~ 554 (555)
+.|.--.+||+|+||.||-+.-.+ |.. +|+|+|.+
T Consensus 141 ~DFe~Lk~IgkGAfGeVrLarKk~Tg~i---yAmK~LkK 176 (550)
T KOG0605|consen 141 DDFELLKVIGKGAFGEVRLARKKDTGEI---YAMKILKK 176 (550)
T ss_pred ccchhheeeccccceeEEEEEEccCCcE---EeeecccH
Confidence 445555599999999999988765 677 99999965
No 51
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.26 E-value=0.36 Score=53.14 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=23.9
Q ss_pred CCCeecCCCCCcEEEEEEC-CceEEeeEEEEEec
Q 008733 521 EKNKLGEGGFGPVYKVTLY-YVISLYHFHVKRSS 553 (555)
Q Consensus 521 ~~n~IG~GgfG~VYKg~L~-~g~~~~~VAVKrL~ 553 (555)
+-..||.|+||.||-+.-. +.++ |||||++
T Consensus 30 dLrEIGHGSFGAVYfArd~~n~ev---VAIKKMs 60 (948)
T KOG0577|consen 30 DLREIGHGSFGAVYFARDVRNSEV---VAIKKMS 60 (948)
T ss_pred HHHHhcCCccceeEEeeccCccce---eeeeecc
Confidence 3348999999999988753 4566 9999986
No 52
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=84.29 E-value=0.78 Score=30.12 Aligned_cols=29 Identities=21% Similarity=0.594 Sum_probs=21.2
Q ss_pred cccccccCCceeeecCC-CCCccccCCCCcc
Q 008733 314 CDSYALCGAYASCNINS-NSPECECLQGFVP 343 (555)
Q Consensus 314 C~~~~~CG~~giC~~~~-~~~~C~C~~GF~~ 343 (555)
|.....|..++.|.... ... |.|++||..
T Consensus 2 C~~~~~C~~~~~C~~~~~~~~-C~C~~g~~g 31 (36)
T cd00053 2 CAASNPCSNGGTCVNTPGSYR-CVCPPGYTG 31 (36)
T ss_pred CCCCCCCCCCCEEecCCCCeE-eECCCCCcc
Confidence 44346788899998653 445 999999964
No 53
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.26 E-value=0.84 Score=51.06 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=28.2
Q ss_pred cCCCCCCeecCCCCCcEEEEEECC-ceEEeeEEEEEecC
Q 008733 517 DNFSEKNKLGEGGFGPVYKVTLYY-VISLYHFHVKRSSL 554 (555)
Q Consensus 517 ~~Fs~~n~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL~~ 554 (555)
.+|.--.+||+|.||+|+.+.+.. ++. .|||.|+|
T Consensus 368 ~~F~~l~vLGkGsFGkV~lae~k~~~e~---yAIK~LKK 403 (694)
T KOG0694|consen 368 DDFRLLAVLGRGSFGKVLLAELKGTNEY---YAIKVLKK 403 (694)
T ss_pred cceEEEEEeccCcCceEEEEEEcCCCcE---EEEEEeec
Confidence 345555699999999999999965 455 99999976
No 54
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=83.95 E-value=0.81 Score=33.20 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=17.3
Q ss_pred cccchHhHHHhhccCCCceeeeecc
Q 008733 390 KNITLWECKELCSKNCSCTAYANAD 414 (555)
Q Consensus 390 ~~~~~~~C~~~Cl~nCsC~a~~y~~ 414 (555)
...+.++|.++|..+=.|.++.|..
T Consensus 14 ~~~s~~~C~~~C~~~~~C~~~~~~~ 38 (51)
T PF14295_consen 14 TASSPEECQAACAADPGCQAFTFNP 38 (51)
T ss_dssp ----HHHHHHHHHTSTT--EEEEET
T ss_pred cCCCHHHHHHHccCCCCCCEEEEEC
Confidence 3558999999999999999999864
No 55
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=83.56 E-value=0.36 Score=42.57 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=27.2
Q ss_pred CCCCCCeecCCCCCcEEEEEECCceEEeeEEEEEe
Q 008733 518 NFSEKNKLGEGGFGPVYKVTLYYVISLYHFHVKRS 552 (555)
Q Consensus 518 ~Fs~~n~IG~GgfG~VYKg~L~~g~~~~~VAVKrL 552 (555)
.|.+ +-|+.|+.|-||+|+|.+|+. ||||..
T Consensus 13 ~fd~-~PlasASiaQVh~a~l~~g~~---VaVKV~ 43 (119)
T PF03109_consen 13 EFDP-EPLASASIAQVHRARLKDGEE---VAVKVQ 43 (119)
T ss_pred HCCc-chhhheehhhheeeeecccch---hhhhhc
Confidence 3553 789999999999999999999 999975
No 56
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=83.40 E-value=0.81 Score=46.54 Aligned_cols=33 Identities=39% Similarity=0.539 Sum_probs=25.7
Q ss_pred CCCCCCeecCCCCCcEEEEEEC------CceEEeeEEEEEec
Q 008733 518 NFSEKNKLGEGGFGPVYKVTLY------YVISLYHFHVKRSS 553 (555)
Q Consensus 518 ~Fs~~n~IG~GgfG~VYKg~L~------~g~~~~~VAVKrL~ 553 (555)
+|.-.++||+|+||.||++... .+.. ||||++.
T Consensus 36 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~---vavK~~~ 74 (302)
T cd05055 36 NLSFGKTLGAGAFGKVVEATAYGLSKSDAVMK---VAVKMLK 74 (302)
T ss_pred HeEEcceeeccCCeeEEEEEEecCCCCCceeE---EEEEecC
Confidence 4666779999999999999741 2345 9999875
No 57
>PHA03209 serine/threonine kinase US3; Provisional
Probab=82.66 E-value=1.1 Score=46.89 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=27.3
Q ss_pred hcCCCCCCeecCCCCCcEEEEEECC-ceEEeeEEEEEe
Q 008733 516 TDNFSEKNKLGEGGFGPVYKVTLYY-VISLYHFHVKRS 552 (555)
Q Consensus 516 T~~Fs~~n~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL 552 (555)
..+|....+||+|+||.||+|.... +.. ||+|..
T Consensus 65 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~---valK~~ 99 (357)
T PHA03209 65 SLGYTVIKTLTPGSEGRVFVATKPGQPDP---VVLKIG 99 (357)
T ss_pred hcCcEEEEEecCCCCeEEEEEEECCCCce---EEEEeC
Confidence 3467777899999999999999864 455 899864
No 58
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=82.48 E-value=1.4 Score=49.22 Aligned_cols=33 Identities=21% Similarity=0.109 Sum_probs=29.0
Q ss_pred cCCCCCCeecCCCCCcEEEEEECC-ceEEeeEEEEEec
Q 008733 517 DNFSEKNKLGEGGFGPVYKVTLYY-VISLYHFHVKRSS 553 (555)
Q Consensus 517 ~~Fs~~n~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL~ 553 (555)
..|++ ..||+|++|.||+|++.+ |+. ||||.+.
T Consensus 120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~---VAVKV~r 153 (537)
T PRK04750 120 DDFDI-KPLASASIAQVHFARLKDNGRE---VVVKVLR 153 (537)
T ss_pred HhcCh-hhhcCCCccEEEEEEECCCCCE---EEEEEeC
Confidence 34766 789999999999999998 999 9999874
No 59
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=82.34 E-value=1 Score=30.47 Aligned_cols=31 Identities=32% Similarity=0.679 Sum_probs=22.1
Q ss_pred cccccccccCCceeeecCCCCCccccCCCCc
Q 008733 312 DQCDSYALCGAYASCNINSNSPECECLQGFV 342 (555)
Q Consensus 312 ~~C~~~~~CG~~giC~~~~~~~~C~C~~GF~ 342 (555)
++|.....|...+.|........|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 4676545788888998653332399999996
No 60
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=82.16 E-value=0.48 Score=49.99 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=29.7
Q ss_pred HHhcCCCCCCeecCCCCCcEEEEEECC----ceEEeeEEEEEec
Q 008733 514 NATDNFSEKNKLGEGGFGPVYKVTLYY----VISLYHFHVKRSS 553 (555)
Q Consensus 514 ~AT~~Fs~~n~IG~GgfG~VYKg~L~~----g~~~~~VAVKrL~ 553 (555)
...+.|...++||+|.|++|||+++.. .+. ||+|++.
T Consensus 33 ~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~---valk~i~ 73 (418)
T KOG1167|consen 33 FISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRY---VALKAIY 73 (418)
T ss_pred hhhhhhhhhccccccchhhhhhhhHhhhccccce---Eeeeecc
Confidence 344567778999999999999999865 345 9999874
No 61
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=81.46 E-value=32 Score=36.53 Aligned_cols=77 Identities=17% Similarity=0.328 Sum_probs=46.8
Q ss_pred cCCCeEEEEeCCCC----------------CCCCCccEEEEcccCCccEEEEeC-CCCEEEeecCCCC--CC-----ccE
Q 008733 89 IAEGTVTWVANRDA----------------PLSDRSGVLRINGERNGILVLLNS-TNDTVWSSNSSIS--AQ-----KPV 144 (555)
Q Consensus 89 ~~~~~~vW~anr~~----------------p~~~~~~~l~l~~~~dG~Lvl~~~-~~~~~Wss~~~~~--~~-----~~~ 144 (555)
.....++|..+-.. |+.. ...+.+... +|.|+-+|. +|+++|+....+. .. ...
T Consensus 86 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v 163 (394)
T PRK11138 86 ADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGSE-KGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLV 163 (394)
T ss_pred CCCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEcC-CCEEEEEECCCCCCcccccCCCceecCCEEECCEE
Confidence 34578899876432 1111 134555431 788988886 6889999875321 11 122
Q ss_pred EEEecCCCEEEecCCCCCCcceEEee
Q 008733 145 AALMESGNLVVKDGKDNNPDNILWQS 170 (555)
Q Consensus 145 ~~L~d~GNlvl~~~~~~~~~~~~WqS 170 (555)
.....+|.|+-.|.. +++++|+-
T Consensus 164 ~v~~~~g~l~ald~~---tG~~~W~~ 186 (394)
T PRK11138 164 LVHTSNGMLQALNES---DGAVKWTV 186 (394)
T ss_pred EEECCCCEEEEEEcc---CCCEeeee
Confidence 233457778888865 48899975
No 62
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=81.34 E-value=0.96 Score=50.47 Aligned_cols=37 Identities=8% Similarity=-0.058 Sum_probs=26.7
Q ss_pred ccHHHHHHHhcCCCCCCeecCCCCCcEEEEEECCceE
Q 008733 507 FDLKIIANATDNFSEKNKLGEGGFGPVYKVTLYYVIS 543 (555)
Q Consensus 507 fs~~eL~~AT~~Fs~~n~IG~GgfG~VYKg~L~~g~~ 543 (555)
.++......+..+...++||+|+||+||||...+...
T Consensus 323 ~~~~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~ 359 (535)
T PRK09605 323 VTWIKEEEVKRRKIPDHLIGKGAEADIKKGEYLGRDA 359 (535)
T ss_pred eeeccccccccccCccceeccCCcEEEEEEeecCccc
Confidence 3344444445555667899999999999999876654
No 63
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=81.34 E-value=0.4 Score=48.61 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=23.3
Q ss_pred eecCCCCCcEEEEEEC-CceEEeeEEEEEe
Q 008733 524 KLGEGGFGPVYKVTLY-YVISLYHFHVKRS 552 (555)
Q Consensus 524 ~IG~GgfG~VYKg~L~-~g~~~~~VAVKrL 552 (555)
+||+|++|+|||++-. .|++ ||||+.
T Consensus 40 KLGEGSYGSV~KAIH~EsG~v---~AIK~V 66 (502)
T KOG0574|consen 40 KLGEGSYGSVHKAIHRESGHV---LAIKKV 66 (502)
T ss_pred HhcCCcchHHHHHHHhccCcE---EEEEec
Confidence 8999999999999874 5888 999985
No 64
>PHA03211 serine/threonine kinase US3; Provisional
Probab=81.19 E-value=1.2 Score=48.85 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=27.4
Q ss_pred hcCCCCCCeecCCCCCcEEEEEECC-ceEEeeEEEEEe
Q 008733 516 TDNFSEKNKLGEGGFGPVYKVTLYY-VISLYHFHVKRS 552 (555)
Q Consensus 516 T~~Fs~~n~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL 552 (555)
..+|.-..+||+|+||.||++..+. ++. ||||+.
T Consensus 168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~---vavK~~ 202 (461)
T PHA03211 168 GLGFAIHRALTPGSEGCVFESSHPDYPQR---VVVKAG 202 (461)
T ss_pred cCCeEEEEEEccCCCeEEEEEEECCCCCE---EEEecc
Confidence 3456666799999999999999875 566 999963
No 65
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=80.12 E-value=1.5 Score=46.81 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=25.8
Q ss_pred CeecCCCCCcEEEEEECC-ceEEeeEEEEEecC
Q 008733 523 NKLGEGGFGPVYKVTLYY-VISLYHFHVKRSSL 554 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL~~ 554 (555)
.+||+|.||.||+++-.. |+. +|+|.+.+
T Consensus 41 ~~lG~G~Fg~v~~~~~~~tg~~---~A~K~i~k 70 (382)
T KOG0032|consen 41 RELGRGQFGVVYLCREKSTGKE---VACKVIPK 70 (382)
T ss_pred hhhCCCCceEEEEEEecCCCce---eEEEEeeh
Confidence 499999999999999877 888 99999864
No 66
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=78.62 E-value=1.4 Score=51.91 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=26.9
Q ss_pred CCCCCCeecCCCCCcEEEEEECCceEEeeEEEEE
Q 008733 518 NFSEKNKLGEGGFGPVYKVTLYYVISLYHFHVKR 551 (555)
Q Consensus 518 ~Fs~~n~IG~GgfG~VYKg~L~~g~~~~~VAVKr 551 (555)
.|.-..+||+|++|+||+|+-.+|+. ||+|.
T Consensus 699 ~~~I~~e~G~g~y~~vy~a~~~~~~~---~alK~ 729 (974)
T KOG1166|consen 699 KFCISKEIGEGSYGSVYVATHSNGKL---VALKV 729 (974)
T ss_pred eEEEEeeeccccceEEEEeecCCCcE---EEEEe
Confidence 35555699999999999999999988 99995
No 67
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=78.24 E-value=1.3 Score=49.90 Aligned_cols=29 Identities=34% Similarity=0.281 Sum_probs=24.1
Q ss_pred eecCCCCCcEEEEEE--CCceEEeeEEEEEec
Q 008733 524 KLGEGGFGPVYKVTL--YYVISLYHFHVKRSS 553 (555)
Q Consensus 524 ~IG~GgfG~VYKg~L--~~g~~~~~VAVKrL~ 553 (555)
+||+|.||.|.+|.. ++|.. ..||||.|.
T Consensus 117 ~LG~GsFgvV~rg~Wt~psgk~-V~VAVKclr 147 (1039)
T KOG0199|consen 117 LLGEGSFGVVKRGTWTQPSGKH-VNVAVKCLR 147 (1039)
T ss_pred HhcCcceeeEeeccccCCCCcE-EeEEEEecc
Confidence 899999999999987 45654 349999985
No 68
>PHA03212 serine/threonine kinase US3; Provisional
Probab=77.22 E-value=1.8 Score=46.20 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=25.9
Q ss_pred CCCCCCeecCCCCCcEEEEEEC-CceEEeeEEEEEec
Q 008733 518 NFSEKNKLGEGGFGPVYKVTLY-YVISLYHFHVKRSS 553 (555)
Q Consensus 518 ~Fs~~n~IG~GgfG~VYKg~L~-~g~~~~~VAVKrL~ 553 (555)
+|.-..+||+|+||.||++.-. .++. ||||+..
T Consensus 93 ~y~~~~~lg~G~~g~V~~~~d~~~~~~---vaiK~~~ 126 (391)
T PHA03212 93 GFSILETFTPGAEGFAFACIDNKTCEH---VVIKAGQ 126 (391)
T ss_pred CcEEEEEEcCCCCeEEEEEEECCCCCE---EEEechh
Confidence 3444569999999999999864 4667 9999764
No 69
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=76.43 E-value=2.1 Score=28.51 Aligned_cols=32 Identities=28% Similarity=0.606 Sum_probs=21.8
Q ss_pred cccccccccCCceeeecCCCCCccccCCCCcc
Q 008733 312 DQCDSYALCGAYASCNINSNSPECECLQGFVP 343 (555)
Q Consensus 312 ~~C~~~~~CG~~giC~~~~~~~~C~C~~GF~~ 343 (555)
++|.....|...+.|........|.|++||..
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 45665456888889976533323999999853
No 70
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=75.99 E-value=1.3 Score=46.10 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=27.1
Q ss_pred CCCCCCeecCCCCCcEEEEEECC-ceEEeeEEEEEecC
Q 008733 518 NFSEKNKLGEGGFGPVYKVTLYY-VISLYHFHVKRSSL 554 (555)
Q Consensus 518 ~Fs~~n~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL~~ 554 (555)
.|.--++||+|+||.||...-.+ ++. .|+|.|++
T Consensus 26 dF~~lkviGkG~fGkV~~Vrk~dt~ki---YAmKvl~K 60 (357)
T KOG0598|consen 26 DFEILKVIGKGSFGKVFQVRKKDTGKI---YAMKVLKK 60 (357)
T ss_pred heeeeeeeeccCCceEEEEEEcccCce---eehhhhhh
Confidence 35556799999999999887655 555 99999865
No 71
>PHA03207 serine/threonine kinase US3; Provisional
Probab=75.66 E-value=2.7 Score=44.62 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=24.5
Q ss_pred CCCCCeecCCCCCcEEEEEECC---ceEEeeEEEEEec
Q 008733 519 FSEKNKLGEGGFGPVYKVTLYY---VISLYHFHVKRSS 553 (555)
Q Consensus 519 Fs~~n~IG~GgfG~VYKg~L~~---g~~~~~VAVKrL~ 553 (555)
|.-..+||+|+||.||++...+ +.. ||||.+.
T Consensus 94 y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~---v~vK~~~ 128 (392)
T PHA03207 94 YNILSSLTPGSEGEVFVCTKHGDEQRKK---VIVKAVT 128 (392)
T ss_pred eEEEEeecCCCCeEEEEEEEcCCcccee---EEEEecc
Confidence 4444589999999999998643 345 9999875
No 72
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.20 E-value=2.3 Score=45.56 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=23.2
Q ss_pred CeecCCCCCcEEEEEECCceEEeeEEEEEec
Q 008733 523 NKLGEGGFGPVYKVTLYYVISLYHFHVKRSS 553 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L~~g~~~~~VAVKrL~ 553 (555)
..||+|.||-|.||.. -|+. ||||...
T Consensus 217 e~IGkGRyGEVwrG~w-rGe~---VAVKiF~ 243 (513)
T KOG2052|consen 217 EIIGKGRFGEVWRGRW-RGED---VAVKIFS 243 (513)
T ss_pred EEecCccccceeeccc-cCCc---eEEEEec
Confidence 4899999999999999 4566 8999864
No 73
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=73.99 E-value=2.3 Score=31.36 Aligned_cols=32 Identities=28% Similarity=0.624 Sum_probs=26.7
Q ss_pred ccccccccccccCCceeeecCCCCCccccCCCCccC
Q 008733 309 VTLDQCDSYALCGAYASCNINSNSPECECLQGFVPN 344 (555)
Q Consensus 309 ~p~~~C~~~~~CG~~giC~~~~~~~~C~C~~GF~~~ 344 (555)
.|.+.|....-|-.++.|. ... |.|++||.+.
T Consensus 17 ~~g~~C~~~~qC~~~s~C~---~g~-C~C~~g~~~~ 48 (52)
T PF01683_consen 17 QPGESCESDEQCIGGSVCV---NGR-CQCPPGYVEV 48 (52)
T ss_pred CCCCCCCCcCCCCCcCEEc---CCE-eECCCCCEec
Confidence 5677899999999999995 345 9999999764
No 74
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=73.66 E-value=0.97 Score=51.68 Aligned_cols=30 Identities=37% Similarity=0.417 Sum_probs=25.5
Q ss_pred CCCCCeecCCCCCc-EEEEEECCceEEeeEEEEEe
Q 008733 519 FSEKNKLGEGGFGP-VYKVTLYYVISLYHFHVKRS 552 (555)
Q Consensus 519 Fs~~n~IG~GgfG~-VYKg~L~~g~~~~~VAVKrL 552 (555)
|+.+.++|.|..|+ ||+|+. +|+. ||||||
T Consensus 511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~---VAVKrl 541 (903)
T KOG1027|consen 511 FSPKEILGYGSNGTVVFRGVY-EGRE---VAVKRL 541 (903)
T ss_pred eccHHHcccCCCCcEEEEEee-CCce---ehHHHH
Confidence 67777899999986 599998 6678 999997
No 75
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=70.75 E-value=5.6 Score=41.55 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=29.7
Q ss_pred cccHHHHHHHhcCCCCCCeecCCCCCcEEEEEECC-ceEEeeEEEEEe
Q 008733 506 IFDLKIIANATDNFSEKNKLGEGGFGPVYKVTLYY-VISLYHFHVKRS 552 (555)
Q Consensus 506 ~fs~~eL~~AT~~Fs~~n~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL 552 (555)
.++..||+.. ++||+|..|+|||+.... +.. +|.|.+
T Consensus 75 ~i~~~dle~~-------~~lG~G~gG~V~kv~Hk~t~~i---~AlK~I 112 (364)
T KOG0581|consen 75 GISLSDLERL-------GVLGSGNGGTVYKVRHKPTGKI---YALKVI 112 (364)
T ss_pred ccCHHHhhhh-------hhcccCCCcEEEEEEEcCCCeE---EEEEee
Confidence 4677777762 489999999999999854 555 999987
No 76
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=69.84 E-value=3.8 Score=45.42 Aligned_cols=29 Identities=31% Similarity=0.345 Sum_probs=26.2
Q ss_pred CeecCCCCCcEEEEEECCceEEeeEEEEEecC
Q 008733 523 NKLGEGGFGPVYKVTLYYVISLYHFHVKRSSL 554 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L~~g~~~~~VAVKrL~~ 554 (555)
.+||+|-||.|-..++.++.. ||||.|..
T Consensus 544 ekiGeGqFGEVhLCeveg~lk---VAVK~Lr~ 572 (807)
T KOG1094|consen 544 EKIGEGQFGEVHLCEVEGPLK---VAVKILRP 572 (807)
T ss_pred hhhcCcccceeEEEEecCceE---EEEeecCc
Confidence 399999999999999988888 99999863
No 77
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=68.93 E-value=4.2 Score=27.09 Aligned_cols=24 Identities=21% Similarity=0.645 Sum_probs=18.8
Q ss_pred cccCCceeeecCCCCCccccCCCCcc
Q 008733 318 ALCGAYASCNINSNSPECECLQGFVP 343 (555)
Q Consensus 318 ~~CG~~giC~~~~~~~~C~C~~GF~~ 343 (555)
..|..+|.|... ... |.|.+||.-
T Consensus 6 ~~C~~~G~C~~~-~g~-C~C~~g~~G 29 (32)
T PF07974_consen 6 NICSGHGTCVSP-CGR-CVCDSGYTG 29 (32)
T ss_pred CccCCCCEEeCC-CCE-EECCCCCcC
Confidence 479999999853 355 999999853
No 78
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=68.92 E-value=1.5 Score=30.07 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=17.8
Q ss_pred ccccCCceeeecCCCCCccccCCCCcc
Q 008733 317 YALCGAYASCNINSNSPECECLQGFVP 343 (555)
Q Consensus 317 ~~~CG~~giC~~~~~~~~C~C~~GF~~ 343 (555)
.+-|.++..|........|.|.+||.-
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~G 31 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYEG 31 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEEC
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCcc
Confidence 357999999987643333999999964
No 79
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=67.94 E-value=1.7 Score=43.53 Aligned_cols=35 Identities=31% Similarity=0.589 Sum_probs=29.9
Q ss_pred cccHHHHHHHhcCCCCCCeecCCCCCcEEEEEECC
Q 008733 506 IFDLKIIANATDNFSEKNKLGEGGFGPVYKVTLYY 540 (555)
Q Consensus 506 ~fs~~eL~~AT~~Fs~~n~IG~GgfG~VYKg~L~~ 540 (555)
.++.+++.+++++|.-..+||+|+||.||++...+
T Consensus 11 ~~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~ 45 (291)
T cd06639 11 MLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKK 45 (291)
T ss_pred hhhcccCCCCCCCeEEEEEeecCCCeEEEEEEECC
Confidence 45667888889999988999999999999998743
No 80
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=67.94 E-value=3.1 Score=25.83 Aligned_cols=10 Identities=30% Similarity=0.982 Sum_probs=8.9
Q ss_pred cccCCCCccC
Q 008733 335 CECLQGFVPN 344 (555)
Q Consensus 335 C~C~~GF~~~ 344 (555)
|.|++||+..
T Consensus 4 C~C~~Gy~l~ 13 (24)
T PF12662_consen 4 CSCPPGYQLS 13 (24)
T ss_pred eeCCCCCcCC
Confidence 9999999864
No 81
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=67.67 E-value=2.6 Score=46.58 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=30.1
Q ss_pred cccccHHHHHHHhcCCCCCCeecCCCCCcEEEEEECCceEEeeEEEEEecC
Q 008733 504 LPIFDLKIIANATDNFSEKNKLGEGGFGPVYKVTLYYVISLYHFHVKRSSL 554 (555)
Q Consensus 504 ~~~fs~~eL~~AT~~Fs~~n~IG~GgfG~VYKg~L~~g~~~~~VAVKrL~~ 554 (555)
+-.+.|++|.+- .-||.|+-|.||.|.|.+ ++ |||||...
T Consensus 118 ~WeiPFe~IsEL-------eWlGSGaQGAVF~Grl~n-et---VAVKKV~e 157 (904)
T KOG4721|consen 118 LWEIPFEEISEL-------EWLGSGAQGAVFLGRLHN-ET---VAVKKVRE 157 (904)
T ss_pred hccCCHHHhhhh-------hhhccCcccceeeeeccC-ce---ehhHHHhh
Confidence 334566666542 389999999999999966 45 89999754
No 82
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=67.24 E-value=4 Score=46.83 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=24.7
Q ss_pred CeecCCCCCcEEEEEECCc-eEEeeEEEEEe
Q 008733 523 NKLGEGGFGPVYKVTLYYV-ISLYHFHVKRS 552 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L~~g-~~~~~VAVKrL 552 (555)
+.|-+|||+.||-+....+ .. +|+||+
T Consensus 43 ~vLAEGGFa~VYla~~~~~~~~---~AlKrm 70 (738)
T KOG1989|consen 43 KVLAEGGFAQVYLAQDVKGGKK---YALKRM 70 (738)
T ss_pred EEEccCCcEEEEEEEecCCCce---eeeeee
Confidence 5899999999999999877 78 999997
No 83
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=66.96 E-value=3.1 Score=45.13 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=24.7
Q ss_pred CeecCCCCCcEEEEEECCceEEeeEEEEEec
Q 008733 523 NKLGEGGFGPVYKVTLYYVISLYHFHVKRSS 553 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L~~g~~~~~VAVKrL~ 553 (555)
++||+|-||.|+.|...+... ||||.+.
T Consensus 212 ~~LG~G~FG~V~~g~~~~~~~---vavk~ik 239 (468)
T KOG0197|consen 212 RELGSGQFGEVWLGKWNGSTK---VAVKTIK 239 (468)
T ss_pred HHhcCCccceEEEEEEcCCCc---ccceEEe
Confidence 389999999999999977767 9999874
No 84
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=64.20 E-value=2.2 Score=28.31 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=18.6
Q ss_pred cccCCceeeecCC--CCCccccCCCCcc
Q 008733 318 ALCGAYASCNINS--NSPECECLQGFVP 343 (555)
Q Consensus 318 ~~CG~~giC~~~~--~~~~C~C~~GF~~ 343 (555)
..|...|.|.... ... |.|++||.-
T Consensus 4 ~~C~n~g~C~~~~~~~y~-C~C~~G~~G 30 (32)
T PF00008_consen 4 NPCQNGGTCIDLPGGGYT-CECPPGYTG 30 (32)
T ss_dssp TSSTTTEEEEEESTSEEE-EEEBTTEES
T ss_pred CcCCCCeEEEeCCCCCEE-eECCCCCcc
Confidence 3788889997643 345 999999953
No 85
>smart00605 CW CW domain.
Probab=63.86 E-value=15 Score=30.58 Aligned_cols=54 Identities=19% Similarity=0.482 Sum_probs=35.0
Q ss_pred cccchHhHHHhhccCCCceeeeeccccCCCceeEeecc-ccccccccc-CCCceEEEEec
Q 008733 390 KNITLWECKELCSKNCSCTAYANADVRGRGSGCLLWFH-DLIDIKELP-ESGQDLFIRMA 447 (555)
Q Consensus 390 ~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~g~~C~~w~~-~l~~~~~~~-~~~~~~~ikv~ 447 (555)
...+.++|.+.|..+..|..+... ....|.++.. .+..+++.. +.+..+-+|+.
T Consensus 20 ~~~sw~~Ci~~C~~~~~Cvlay~~----~~~~C~~f~~~~~~~v~~~~~~~~~~VAfK~~ 75 (94)
T smart00605 20 ATLSWDECIQKCYEDSNCVLAYGN----SSETCYLFSYGTVLTVKKLSSSSGKKVAFKVS 75 (94)
T ss_pred cCCCHHHHHHHHhCCCceEEEecC----CCCceEEEEcCCeEEEEEccCCCCcEEEEEEe
Confidence 355789999999999999976543 1247987543 344444433 24455666664
No 86
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=63.52 E-value=1.9 Score=44.25 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=22.8
Q ss_pred CeecCCCCCcEEEEEECCceE--EeeEEEEEec
Q 008733 523 NKLGEGGFGPVYKVTLYYVIS--LYHFHVKRSS 553 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L~~g~~--~~~VAVKrL~ 553 (555)
-+||+|.+|.|||++-.++.. .+.+|+|+++
T Consensus 30 g~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk 62 (438)
T KOG0666|consen 30 GKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFK 62 (438)
T ss_pred ceecccccceeeEeeeccCCcccchhhHHHHHh
Confidence 489999999999997654321 1138999875
No 87
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.41 E-value=2.3 Score=45.10 Aligned_cols=47 Identities=26% Similarity=0.180 Sum_probs=33.7
Q ss_pred ccccHHHHHHHhcCCCCCCeecCCCCCcEEEEEECCceEEeeEEEEEecC
Q 008733 505 PIFDLKIIANATDNFSEKNKLGEGGFGPVYKVTLYYVISLYHFHVKRSSL 554 (555)
Q Consensus 505 ~~fs~~eL~~AT~~Fs~~n~IG~GgfG~VYKg~L~~g~~~~~VAVKrL~~ 554 (555)
+..+-.+..+||+ |+--.+||+|+||.|..++-....++ .|||.|.+
T Consensus 338 ~~~~~~d~i~~tD-FnFl~VlGKGSFGKVlLaerkgtdEL--yAiKiLkK 384 (683)
T KOG0696|consen 338 HNSSKRDRIKATD-FNFLMVLGKGSFGKVLLAERKGTDEL--YAIKILKK 384 (683)
T ss_pred CCCCcccceeecc-cceEEEeccCccceeeeecccCcchh--hhhhhhcc
Confidence 3444455566664 54445999999999999887665553 89998865
No 88
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=62.81 E-value=1.5 Score=47.11 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=27.9
Q ss_pred cCCCCCCeecCCCCCcEEEEEECC-ceEEeeEEEEEecC
Q 008733 517 DNFSEKNKLGEGGFGPVYKVTLYY-VISLYHFHVKRSSL 554 (555)
Q Consensus 517 ~~Fs~~n~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL~~ 554 (555)
+-|+.-.+||+||||-||-....+ |.. .|-|+|++
T Consensus 185 n~F~~~RvlGkGGFGEV~acqvraTGKM---YAcKkL~K 220 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCACQVRATGKM---YACKKLDK 220 (591)
T ss_pred cceeeeEEEecccccceeEEEEecchhh---HHHHHHHH
Confidence 447777899999999999877754 566 88888864
No 89
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=62.11 E-value=5.3 Score=44.68 Aligned_cols=29 Identities=34% Similarity=0.394 Sum_probs=21.4
Q ss_pred CeecCCCCCcEEEEEECC---ceEEeeEEEEEe
Q 008733 523 NKLGEGGFGPVYKVTLYY---VISLYHFHVKRS 552 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L~~---g~~~~~VAVKrL 552 (555)
.+||+|-||-||+|+..+ |.. .-||||--
T Consensus 395 r~iG~GqFGdVy~gvYt~~~kge~-iaVAvKtC 426 (974)
T KOG4257|consen 395 RLIGEGQFGDVYKGVYTDPEKGER-IAVAVKTC 426 (974)
T ss_pred HhhcCCcccceeeeEecccccCcc-eeeeeehh
Confidence 499999999999999743 332 12888853
No 90
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=61.43 E-value=5.6 Score=41.30 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=24.5
Q ss_pred CCCCCeecCCCCCcEEEEE-ECCceEEeeEEEEE
Q 008733 519 FSEKNKLGEGGFGPVYKVT-LYYVISLYHFHVKR 551 (555)
Q Consensus 519 Fs~~n~IG~GgfG~VYKg~-L~~g~~~~~VAVKr 551 (555)
|.--.+||+|.||..+.|+ |-+++. ||||-
T Consensus 30 yrVGkKIGeGsFG~lf~G~Nl~nne~---VAIKf 60 (449)
T KOG1165|consen 30 YRVGKKIGEGSFGVLFLGKNLYNNEP---VAIKF 60 (449)
T ss_pred ceeccccccCcceeeecccccccCce---EEEEe
Confidence 4445699999999999988 457777 99994
No 91
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=60.85 E-value=2.1 Score=22.50 Aligned_cols=9 Identities=33% Similarity=1.139 Sum_probs=6.7
Q ss_pred cccCCCCcc
Q 008733 335 CECLQGFVP 343 (555)
Q Consensus 335 C~C~~GF~~ 343 (555)
|.|++||.-
T Consensus 2 C~C~~G~~G 10 (13)
T PF12661_consen 2 CQCPPGWTG 10 (13)
T ss_dssp EEE-TTEET
T ss_pred ccCcCCCcC
Confidence 999999963
No 92
>smart00181 EGF Epidermal growth factor-like domain.
Probab=60.44 E-value=7.4 Score=25.62 Aligned_cols=24 Identities=21% Similarity=0.611 Sum_probs=17.3
Q ss_pred cccCCceeeecC-CCCCccccCCCCcc
Q 008733 318 ALCGAYASCNIN-SNSPECECLQGFVP 343 (555)
Q Consensus 318 ~~CG~~giC~~~-~~~~~C~C~~GF~~ 343 (555)
..|... .|... +... |.|++||+.
T Consensus 6 ~~C~~~-~C~~~~~~~~-C~C~~g~~g 30 (35)
T smart00181 6 GPCSNG-TCINTPGSYT-CSCPPGYTG 30 (35)
T ss_pred CCCCCC-EEECCCCCeE-eECCCCCcc
Confidence 457766 88765 3445 999999964
No 93
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=60.21 E-value=4.1 Score=44.69 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=26.2
Q ss_pred CCCCCeecCCCCCcEEEEEEC-CceEEeeEEEEEecC
Q 008733 519 FSEKNKLGEGGFGPVYKVTLY-YVISLYHFHVKRSSL 554 (555)
Q Consensus 519 Fs~~n~IG~GgfG~VYKg~L~-~g~~~~~VAVKrL~~ 554 (555)
|.=..+||+|+|.+||+++=. .+.+ +|||.|++
T Consensus 75 F~Fg~~lGeGSYStV~~A~~~~t~ke---YAiKVl~K 108 (604)
T KOG0592|consen 75 FKFGKILGEGSYSTVVLAREKATGKE---YAIKVLDK 108 (604)
T ss_pred cchhheeccccceeEEEeeecCCCce---eeHhhhhH
Confidence 333459999999999999854 4667 99999875
No 94
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=60.14 E-value=6.7 Score=43.56 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=28.5
Q ss_pred cCCCCCCeecCCCCCcEEEEEECCceEEeeEEEEEec
Q 008733 517 DNFSEKNKLGEGGFGPVYKVTLYYVISLYHFHVKRSS 553 (555)
Q Consensus 517 ~~Fs~~n~IG~GgfG~VYKg~L~~g~~~~~VAVKrL~ 553 (555)
..|++ +-|+.++-|-||+|+|++|+. ||||.+.
T Consensus 126 ~eF~~-~PiAsASIaQVH~A~L~sG~~---VAVKVqr 158 (517)
T COG0661 126 SEFEP-EPIASASIAQVHRAVLKSGEE---VAVKVQR 158 (517)
T ss_pred HHcCC-CchhhhhHhhheeEEecCCCE---EEEEecC
Confidence 44764 688999999999999999999 9999763
No 95
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=59.70 E-value=4.7 Score=27.16 Aligned_cols=18 Identities=33% Similarity=0.886 Sum_probs=13.0
Q ss_pred eeecCCCCCccccCCCCcc
Q 008733 325 SCNINSNSPECECLQGFVP 343 (555)
Q Consensus 325 iC~~~~~~~~C~C~~GF~~ 343 (555)
.|+.+.... |.||.||..
T Consensus 11 ~CDpn~~~~-C~CPeGyIl 28 (34)
T PF09064_consen 11 DCDPNSPGQ-CFCPEGYIL 28 (34)
T ss_pred ccCCCCCCc-eeCCCceEe
Confidence 455554556 999999965
No 96
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=59.63 E-value=9.3 Score=42.66 Aligned_cols=28 Identities=29% Similarity=0.199 Sum_probs=24.0
Q ss_pred eecCCCCCcEEEEEECC-ceEEeeEEEEEecC
Q 008733 524 KLGEGGFGPVYKVTLYY-VISLYHFHVKRSSL 554 (555)
Q Consensus 524 ~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL~~ 554 (555)
.||+|.||.|-|+.=.. ++. ||||.+.+
T Consensus 193 ~LGkGtFGQVvk~~d~~T~e~---VAIKIiKN 221 (586)
T KOG0667|consen 193 VLGKGSFGQVVKAYDHKTGEI---VAIKIIKN 221 (586)
T ss_pred EecccccceeEEEEecCCCcE---EEEEeecc
Confidence 89999999999998654 666 99998864
No 97
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=57.41 E-value=20 Score=27.90 Aligned_cols=32 Identities=19% Similarity=0.420 Sum_probs=25.7
Q ss_pred cccchHhHHHhhccCCCceeeeeccccCCCceeEeec
Q 008733 390 KNITLWECKELCSKNCSCTAYANADVRGRGSGCLLWF 426 (555)
Q Consensus 390 ~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~g~~C~~w~ 426 (555)
...+-++|-+.|..+-.|..+.+. ...|.++.
T Consensus 18 ~~~sw~~Cv~~C~~~~~C~la~~~-----~~~C~~y~ 49 (71)
T PF08277_consen 18 TNTSWDDCVQKCYNDENCVLAYFD-----SGKCYLYN 49 (71)
T ss_pred cCCCHHHHhHHhCCCCEEEEEEeC-----CCCEEEEE
Confidence 455789999999999999998775 23798764
No 98
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=57.16 E-value=9.9 Score=43.22 Aligned_cols=31 Identities=35% Similarity=0.450 Sum_probs=22.6
Q ss_pred CeecCCCCCcEEEEEECCce-----EEeeEEEEEec
Q 008733 523 NKLGEGGFGPVYKVTLYYVI-----SLYHFHVKRSS 553 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L~~g~-----~~~~VAVKrL~ 553 (555)
..||+|.||.|+||.+..-. ....||||.+.
T Consensus 302 ~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k 337 (609)
T KOG0200|consen 302 KYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLK 337 (609)
T ss_pred ceeecccccceEeEEEeecccccccceEEEEEEecc
Confidence 39999999999999974210 01239999985
No 99
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.18 E-value=9.8 Score=40.97 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=23.8
Q ss_pred eecCCCCCcEEEEE-ECCceEEeeEEEEEec
Q 008733 524 KLGEGGFGPVYKVT-LYYVISLYHFHVKRSS 553 (555)
Q Consensus 524 ~IG~GgfG~VYKg~-L~~g~~~~~VAVKrL~ 553 (555)
+||.|..++||+|. +|-++. ||||++.
T Consensus 33 ~IG~G~sa~V~~A~c~p~~e~---VAIK~in 60 (516)
T KOG0582|consen 33 VIGVGASAVVYLARCIPTNEV---VAIKIIN 60 (516)
T ss_pred EEeccceeEeeeeeecccCCE---EEEEEee
Confidence 99999999999987 467788 9999974
No 100
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=56.06 E-value=10 Score=40.40 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=24.5
Q ss_pred CeecCCCCCcEEEEEE-CCceEEeeEEEEEecC
Q 008733 523 NKLGEGGFGPVYKVTL-YYVISLYHFHVKRSSL 554 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L-~~g~~~~~VAVKrL~~ 554 (555)
..||+|+||.|-+|.= ..|+. ||||-+++
T Consensus 178 ~~LGsGafg~Vkla~e~~tgk~---vAiKIi~k 207 (475)
T KOG0615|consen 178 KTLGSGAFGLVKLAYEKKTGKQ---VAIKIINK 207 (475)
T ss_pred eeecCCceeEEEEEEEcccCcE---EEeeeeeh
Confidence 4899999999998875 45778 99998865
No 101
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=54.48 E-value=8.6 Score=37.47 Aligned_cols=28 Identities=32% Similarity=0.410 Sum_probs=23.1
Q ss_pred CeecCCCCCcEEEEEE-CCceEEeeEEEEEec
Q 008733 523 NKLGEGGFGPVYKVTL-YYVISLYHFHVKRSS 553 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L-~~g~~~~~VAVKrL~ 553 (555)
..||+|++|.|=|-.+ ++|+. +||||+.
T Consensus 52 ~elGrGayG~vekmrh~~sg~i---mAvKri~ 80 (282)
T KOG0984|consen 52 EELGRGAYGVVEKMRHIQSGTI---MAVKRIR 80 (282)
T ss_pred hhhcCCccchhhheeeccCCeE---EEEeeeh
Confidence 4899999999876554 68888 9999973
No 102
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=52.80 E-value=13 Score=40.78 Aligned_cols=28 Identities=11% Similarity=-0.069 Sum_probs=22.2
Q ss_pred CCeecCCCCCcEEEEEECC--ceEEeeEEEEEe
Q 008733 522 KNKLGEGGFGPVYKVTLYY--VISLYHFHVKRS 552 (555)
Q Consensus 522 ~n~IG~GgfG~VYKg~L~~--g~~~~~VAVKrL 552 (555)
.++||+|+||.||++.-.. +.. ||+|++
T Consensus 72 ~~~lg~G~~g~vy~a~~~~~~~~~---vv~K~~ 101 (478)
T PTZ00267 72 TTLVGRNPTTAAFVATRGSDPKEK---VVAKFV 101 (478)
T ss_pred EEEEEeCCCcEEEEEEEcCCCCeE---EEEEEc
Confidence 4599999999999997643 456 888865
No 103
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.22 E-value=12 Score=41.21 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=24.0
Q ss_pred CeecCCCCCcEEEEEE-CCceEEeeEEEEEecC
Q 008733 523 NKLGEGGFGPVYKVTL-YYVISLYHFHVKRSSL 554 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L-~~g~~~~~VAVKrL~~ 554 (555)
.+||+|..|.||-+.= ..+++ ||||+++.
T Consensus 279 ~kigqgaSG~vy~A~~~~~~~~---VaiK~m~l 308 (550)
T KOG0578|consen 279 KKIGQGATGGVYVARKISTKQE---VAIKRMDL 308 (550)
T ss_pred hhhccccccceeeeeeccCCce---EEEEEEEe
Confidence 4899999999998764 56777 99999853
No 104
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=49.92 E-value=3.1 Score=44.56 Aligned_cols=26 Identities=42% Similarity=0.508 Sum_probs=21.0
Q ss_pred CeecCCCCCcEEEEE-ECCceEEeeEEEEE
Q 008733 523 NKLGEGGFGPVYKVT-LYYVISLYHFHVKR 551 (555)
Q Consensus 523 n~IG~GgfG~VYKg~-L~~g~~~~~VAVKr 551 (555)
++||+|||.-|||+. |...+- ||||.
T Consensus 469 hLLGrGGFSEVyKAFDl~EqRY---vAvKI 495 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAFDLTEQRY---VAVKI 495 (775)
T ss_pred HHhccccHHHHHHhcccchhhe---eeEee
Confidence 589999999999987 344555 99985
No 105
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=49.81 E-value=16 Score=33.52 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=7.3
Q ss_pred hcCCCCCCeecC
Q 008733 516 TDNFSEKNKLGE 527 (555)
Q Consensus 516 T~~Fs~~n~IG~ 527 (555)
++.|..+.-||.
T Consensus 111 ~~~y~s~splg~ 122 (154)
T PF04478_consen 111 SDKYESNSPLGS 122 (154)
T ss_pred ccccccCCCCCC
Confidence 456666666665
No 106
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=49.31 E-value=9.4 Score=42.77 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=25.8
Q ss_pred CCCeecCCCCCcEEEEEECCceEEeeEEEEEecC
Q 008733 521 EKNKLGEGGFGPVYKVTLYYVISLYHFHVKRSSL 554 (555)
Q Consensus 521 ~~n~IG~GgfG~VYKg~L~~g~~~~~VAVKrL~~ 554 (555)
..++||-|-+|-||.|+...-... ||||-|..
T Consensus 271 MkhKLGGGQYGeVYeGvWKkyslT--vAVKtLKE 302 (1157)
T KOG4278|consen 271 MKHKLGGGQYGEVYEGVWKKYSLT--VAVKTLKE 302 (1157)
T ss_pred eeeccCCCcccceeeeeeecccee--eehhhhhh
Confidence 357999999999999999754322 99998864
No 107
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=48.94 E-value=82 Score=33.41 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=26.3
Q ss_pred CccEEEEeC-CCCEEEeecCCCC---C-----CccEEEEecCCCEEEecCCCCCCcceEEee
Q 008733 118 NGILVLLNS-TNDTVWSSNSSIS---A-----QKPVAALMESGNLVVKDGKDNNPDNILWQS 170 (555)
Q Consensus 118 dG~Lvl~~~-~~~~~Wss~~~~~---~-----~~~~~~L~d~GNlvl~~~~~~~~~~~~WqS 170 (555)
||.|+..|. +|..+|+.+.... . ........++|.|...|.. +++++|+-
T Consensus 303 ~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~---tG~~~~~~ 361 (394)
T PRK11138 303 NDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINRE---DGRFVAQQ 361 (394)
T ss_pred CCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECC---CCCEEEEE
Confidence 677766666 4567786552110 0 1122233456666666653 36666654
No 108
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=47.93 E-value=36 Score=27.50 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=26.3
Q ss_pred ccchHhHHHhhcc--CCCceeeeeccccCCCceeEeecc
Q 008733 391 NITLWECKELCSK--NCSCTAYANADVRGRGSGCLLWFH 427 (555)
Q Consensus 391 ~~~~~~C~~~Cl~--nCsC~a~~y~~~~~~g~~C~~w~~ 427 (555)
..+.++|.+.|++ +=.|.++.|... ...|.+-..
T Consensus 24 ~~s~~~C~~~C~~~~~f~CrSf~y~~~---~~~C~L~~~ 59 (80)
T cd01099 24 VASLEECLRKCLEETEFTCRSFNYNYK---SKECILSDE 59 (80)
T ss_pred cCCHHHHHHHhCCCCCceEeEEEEEcC---CCEEEEeCC
Confidence 4689999999999 778999988632 347987443
No 109
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=46.32 E-value=2.4e+02 Score=26.85 Aligned_cols=77 Identities=27% Similarity=0.413 Sum_probs=47.1
Q ss_pred cCCCeEEEEeCCCCCCCCC----ccEE-EEcccCCccEEEEe-CCCCEEEee-cCCC---C-CC-------ccEEE-Eec
Q 008733 89 IAEGTVTWVANRDAPLSDR----SGVL-RINGERNGILVLLN-STNDTVWSS-NSSI---S-AQ-------KPVAA-LME 149 (555)
Q Consensus 89 ~~~~~~vW~anr~~p~~~~----~~~l-~l~~~~dG~Lvl~~-~~~~~~Wss-~~~~---~-~~-------~~~~~-L~d 149 (555)
....+++|...-+.++... ...+ ..+. ||.|..+| .+|.++|.. .... . .. ...+. ...
T Consensus 53 ~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~--~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (238)
T PF13360_consen 53 AKTGKVLWRFDLPGPISGAPVVDGGRVYVGTS--DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS 130 (238)
T ss_dssp TTTSEEEEEEECSSCGGSGEEEETTEEEEEET--TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET
T ss_pred CCCCCEEEEeeccccccceeeecccccccccc--eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec
Confidence 4568899998876554321 2333 3445 78888888 689999994 3210 0 00 11223 334
Q ss_pred CCCEEEecCCCCCCcceEEee
Q 008733 150 SGNLVVKDGKDNNPDNILWQS 170 (555)
Q Consensus 150 ~GNlvl~~~~~~~~~~~~WqS 170 (555)
+|.|+..|.. +++++|+-
T Consensus 131 ~g~l~~~d~~---tG~~~w~~ 148 (238)
T PF13360_consen 131 SGKLVALDPK---TGKLLWKY 148 (238)
T ss_dssp CSEEEEEETT---TTEEEEEE
T ss_pred cCcEEEEecC---CCcEEEEe
Confidence 8889999854 48899975
No 110
>PHA03210 serine/threonine kinase US3; Provisional
Probab=46.19 E-value=8.4 Score=42.57 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=19.3
Q ss_pred hcCCCCCCeecCCCCCcEEEEEEC
Q 008733 516 TDNFSEKNKLGEGGFGPVYKVTLY 539 (555)
Q Consensus 516 T~~Fs~~n~IG~GgfG~VYKg~L~ 539 (555)
.+.|.-..+||+|+||+||++.+.
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~~~ 170 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICALR 170 (501)
T ss_pred hhccEEEeEecCCCCcceEEEEEe
Confidence 345666679999999999998764
No 111
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=46.03 E-value=42 Score=32.22 Aligned_cols=50 Identities=28% Similarity=0.466 Sum_probs=32.7
Q ss_pred CccEEEEeC-CCCEEEeecCCCCCC----------ccEEEEecCCCEEEecCCCCCCcceEEee
Q 008733 118 NGILVLLNS-TNDTVWSSNSSISAQ----------KPVAALMESGNLVVKDGKDNNPDNILWQS 170 (555)
Q Consensus 118 dG~Lvl~~~-~~~~~Wss~~~~~~~----------~~~~~L~d~GNlvl~~~~~~~~~~~~WqS 170 (555)
+|.|..+|. +|+.+|+.+...... ........+|+|+.+|.. +++++|+-
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~---tG~~~W~~ 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAK---TGKVLWRF 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETT---TSEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECC---CCCEEEEe
Confidence 788988897 788999986411011 111222477778888754 48899974
No 112
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=45.77 E-value=77 Score=33.19 Aligned_cols=56 Identities=20% Similarity=0.358 Sum_probs=32.5
Q ss_pred EEEEcccCCccEEEEe-CCCCEEEeecCCCCC--C-----ccEEEEecCCCEEEecCCCCCCcceEEe
Q 008733 110 VLRINGERNGILVLLN-STNDTVWSSNSSISA--Q-----KPVAALMESGNLVVKDGKDNNPDNILWQ 169 (555)
Q Consensus 110 ~l~l~~~~dG~Lvl~~-~~~~~~Wss~~~~~~--~-----~~~~~L~d~GNlvl~~~~~~~~~~~~Wq 169 (555)
.+.+... +|.|+-+| .+|+++|........ . .....-..+|+|+..|.. +++++|+
T Consensus 67 ~v~v~~~-~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~---tG~~~W~ 130 (377)
T TIGR03300 67 KVYAADA-DGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAE---DGKELWR 130 (377)
T ss_pred EEEEECC-CCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECC---CCcEeee
Confidence 4444431 68888788 478899987643211 0 111222356777777653 4888896
No 113
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=44.31 E-value=16 Score=42.31 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=16.4
Q ss_pred CCCeecCCCCCcEEEEEECC
Q 008733 521 EKNKLGEGGFGPVYKVTLYY 540 (555)
Q Consensus 521 ~~n~IG~GgfG~VYKg~L~~ 540 (555)
....||+|+||+||-|.-.+
T Consensus 998 ~~relg~gsfg~Vy~g~~nn 1017 (1025)
T KOG4258|consen 998 LGRELGQGSFGMVYEGNANN 1017 (1025)
T ss_pred hhhhhccCccceEEEecCCc
Confidence 34699999999999998533
No 114
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.14 E-value=20 Score=40.85 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=23.6
Q ss_pred CCeecCCCCCcEEEEEECCceEEeeEEEEEec
Q 008733 522 KNKLGEGGFGPVYKVTLYYVISLYHFHVKRSS 553 (555)
Q Consensus 522 ~n~IG~GgfG~VYKg~L~~g~~~~~VAVKrL~ 553 (555)
.-+||+|.+|+||-|.=-+.++ .||||-+.
T Consensus 580 rvVLGKGTYG~VYA~RD~~tqv--rIaIKEIp 609 (1226)
T KOG4279|consen 580 RVVLGKGTYGTVYAARDMDTQV--RIAIKEIP 609 (1226)
T ss_pred eEEeecCceeEEEeecccccee--EEEeeecc
Confidence 3489999999999998655544 39999763
No 115
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=41.12 E-value=19 Score=35.66 Aligned_cols=34 Identities=9% Similarity=-0.106 Sum_probs=27.5
Q ss_pred hcCCCCCCeecCCCCCcEEEEEECCceEEeeEEEEEec
Q 008733 516 TDNFSEKNKLGEGGFGPVYKVTLYYVISLYHFHVKRSS 553 (555)
Q Consensus 516 T~~Fs~~n~IG~GgfG~VYKg~L~~g~~~~~VAVKrL~ 553 (555)
.+.+...++||.||||.||...- ++.. +|||.+.
T Consensus 30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~---~iiKvf~ 63 (232)
T PRK10359 30 SYNIKTIKVFRNIDDTKVSLIDT-DYGK---YILKVFA 63 (232)
T ss_pred hCceEEEEEecCCCceEEEEEec-CCCc---EEEEEec
Confidence 35677778999999999998655 5667 9999874
No 116
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=40.17 E-value=14 Score=38.28 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=32.8
Q ss_pred cHHHHHHHhcCCCCCCeecCCCCCcEEEEE-ECCceEEeeEEEEEecCC
Q 008733 508 DLKIIANATDNFSEKNKLGEGGFGPVYKVT-LYYVISLYHFHVKRSSLL 555 (555)
Q Consensus 508 s~~eL~~AT~~Fs~~n~IG~GgfG~VYKg~-L~~g~~~~~VAVKrL~~~ 555 (555)
+|+|+.+-|. .+||+|+++.|--.+ +..|.+ .|||.+++.
T Consensus 74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~E---YAVKiidKq 114 (463)
T KOG0607|consen 74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKE---YAVKIIDKQ 114 (463)
T ss_pred hHHHHHHhHH-----HHhcCccceeeeeeeeeccchh---hhhhhhhcC
Confidence 5688888885 499999999998755 578888 999998763
No 117
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.48 E-value=95 Score=31.35 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=33.0
Q ss_pred CCeEEEEeCCCCCCCCC----ccEEEE-cccCCccEEEEeCCCCEEEeecC
Q 008733 91 EGTVTWVANRDAPLSDR----SGVLRI-NGERNGILVLLNSTNDTVWSSNS 136 (555)
Q Consensus 91 ~~~~vW~anr~~p~~~~----~~~l~l-~~~~dG~Lvl~~~~~~~~Wss~~ 136 (555)
+.+..|.+.|..|+-.+ +..+.+ +- ||+|.-.|+.|+.||...+
T Consensus 168 ~~~~~w~~~~~~PiF~splcv~~sv~i~~V--dG~l~~f~~sG~qvwr~~t 216 (354)
T KOG4649|consen 168 SSTEFWAATRFGPIFASPLCVGSSVIITTV--DGVLTSFDESGRQVWRPAT 216 (354)
T ss_pred CcceehhhhcCCccccCceeccceEEEEEe--ccEEEEEcCCCcEEEeecC
Confidence 45889999999998643 233444 35 8999889999999997664
No 118
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=39.02 E-value=51 Score=20.87 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=14.8
Q ss_pred EEEcccCCccEEEEeCCCCEEE
Q 008733 111 LRINGERNGILVLLNSTNDTVW 132 (555)
Q Consensus 111 l~l~~~~dG~Lvl~~~~~~~~W 132 (555)
+.+.. +|++++.|..+.-||
T Consensus 7 vav~~--~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 7 VAVDS--DGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEET--TSEEEEEECCCTEEE
T ss_pred EEEeC--CCCEEEEECCCCEEE
Confidence 66666 888888887766665
No 119
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=38.93 E-value=27 Score=37.36 Aligned_cols=28 Identities=36% Similarity=0.455 Sum_probs=24.5
Q ss_pred eecCCCCCcEEEEEECCc-eEEeeEEEEEecC
Q 008733 524 KLGEGGFGPVYKVTLYYV-ISLYHFHVKRSSL 554 (555)
Q Consensus 524 ~IG~GgfG~VYKg~L~~g-~~~~~VAVKrL~~ 554 (555)
.||+|.-|+||-+.+.+- .. .|+|.+++
T Consensus 84 ~LG~GdiG~VyL~~l~~t~~~---fAmKVmdK 112 (459)
T KOG0610|consen 84 RLGCGDIGTVYLVELRGTNCL---FAMKVMDK 112 (459)
T ss_pred HcCCCCceeEEEEEecCCCce---EEEEEecH
Confidence 899999999999999765 45 99999875
No 120
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=38.13 E-value=29 Score=37.84 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=24.3
Q ss_pred CCeecCCCCCcEEEEEEC-CceEEeeEEEEEecC
Q 008733 522 KNKLGEGGFGPVYKVTLY-YVISLYHFHVKRSSL 554 (555)
Q Consensus 522 ~n~IG~GgfG~VYKg~L~-~g~~~~~VAVKrL~~ 554 (555)
..+||+|.||.|-+|.-. +++. +|||.|.+
T Consensus 102 ~~eiG~G~yGkVkLar~~~~~~l---~AiKil~K 132 (576)
T KOG0585|consen 102 IKEIGSGQYGKVKLARDEVDGKL---YAIKILPK 132 (576)
T ss_pred hhhhcCCccceEEEEeecCCCcE---EEEEeech
Confidence 348999999999888753 5667 99999865
No 121
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=35.98 E-value=13 Score=41.06 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.3
Q ss_pred eecCCCCCcEEEEEECCceEEeeEEEEEec
Q 008733 524 KLGEGGFGPVYKVTLYYVISLYHFHVKRSS 553 (555)
Q Consensus 524 ~IG~GgfG~VYKg~L~~g~~~~~VAVKrL~ 553 (555)
+||+||...|||..-.+.+. +|.||..
T Consensus 368 ~iG~GGSSkV~kV~~s~~~i---yalkkv~ 394 (677)
T KOG0596|consen 368 QIGSGGSSKVFKVLNSDKQI---YALKKVV 394 (677)
T ss_pred hhcCCCcceeeeeecCCCcc---hhhhHHH
Confidence 89999999999999988888 9998863
No 122
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=35.89 E-value=34 Score=38.18 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=27.3
Q ss_pred cCCCCCCeecCCCCCcEEEEEECCceEEeeEEEEEe
Q 008733 517 DNFSEKNKLGEGGFGPVYKVTLYYVISLYHFHVKRS 552 (555)
Q Consensus 517 ~~Fs~~n~IG~GgfG~VYKg~L~~g~~~~~VAVKrL 552 (555)
..|++ .-||.-+.|-|||++|++|+. ||||.-
T Consensus 162 ~~f~~-~piaaASlaQVhrA~L~~G~~---VaVKVQ 193 (538)
T KOG1235|consen 162 SEFDE-EPIAAASLAQVHRARLKNGED---VAVKVQ 193 (538)
T ss_pred HhcCc-chhhhcchhheEEEEecCCCE---EEEEec
Confidence 34664 578999999999999999999 999974
No 123
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=35.74 E-value=12 Score=25.63 Aligned_cols=20 Identities=20% Similarity=0.534 Sum_probs=11.8
Q ss_pred eeecC-CCCCccccCCCCccCC
Q 008733 325 SCNIN-SNSPECECLQGFVPNS 345 (555)
Q Consensus 325 iC~~~-~~~~~C~C~~GF~~~~ 345 (555)
+|... .... |+|++||....
T Consensus 11 ~C~~~~g~~~-C~C~~Gy~L~~ 31 (36)
T PF14670_consen 11 ICVNTPGSYR-CSCPPGYKLAE 31 (36)
T ss_dssp EEEEETTSEE-EE-STTEEE-T
T ss_pred CCccCCCceE-eECCCCCEECc
Confidence 45543 3344 99999998643
No 124
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=34.88 E-value=45 Score=32.94 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=22.7
Q ss_pred CCeec-CCCCCcEEEEEECCceEEeeEEEEEec
Q 008733 522 KNKLG-EGGFGPVYKVTLYYVISLYHFHVKRSS 553 (555)
Q Consensus 522 ~n~IG-~GgfG~VYKg~L~~g~~~~~VAVKrL~ 553 (555)
..+|| .||.|+||+.... +.. ++||+.+
T Consensus 36 ~~~lg~~~g~gtv~~v~~~-~~~---~vlk~~~ 64 (239)
T PRK01723 36 ARVVGSAKGRGTTWFVQTP-GVN---WVLRHYR 64 (239)
T ss_pred CceeecCCCCccEEEEEeC-Cce---EEEEEee
Confidence 35898 9999999999996 455 7888764
No 125
>PF15102 TMEM154: TMEM154 protein family
Probab=34.45 E-value=57 Score=29.80 Aligned_cols=6 Identities=0% Similarity=0.363 Sum_probs=2.6
Q ss_pred cHHHHH
Q 008733 508 DLKIIA 513 (555)
Q Consensus 508 s~~eL~ 513 (555)
..+||.
T Consensus 126 Emeeld 131 (146)
T PF15102_consen 126 EMEELD 131 (146)
T ss_pred hHHHHH
Confidence 344443
No 126
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=34.17 E-value=1.2e+02 Score=33.45 Aligned_cols=76 Identities=20% Similarity=0.380 Sum_probs=45.4
Q ss_pred CCCeEEEEeCCC-------CCCCCCccEEEEcccCCccEEEEeC-CCCEEEeecCCCC---------C------C-ccEE
Q 008733 90 AEGTVTWVANRD-------APLSDRSGVLRINGERNGILVLLNS-TNDTVWSSNSSIS---------A------Q-KPVA 145 (555)
Q Consensus 90 ~~~~~vW~anr~-------~p~~~~~~~l~l~~~~dG~Lvl~~~-~~~~~Wss~~~~~---------~------~-~~~~ 145 (555)
...+++|..+-. .|+... .++.+... +|.|+-+|. .|+.+|+...... . . ....
T Consensus 37 ~~~~~~W~~~~~~~~~~~~sPvv~~-g~vy~~~~-~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~ 114 (488)
T cd00216 37 KKLKVAWTFSTGDERGQEGTPLVVD-GDMYFTTS-HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVF 114 (488)
T ss_pred hcceeeEEEECCCCCCcccCCEEEC-CEEEEeCC-CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEE
Confidence 445678887654 244332 44544431 799888886 6889998764211 0 0 1111
Q ss_pred EEecCCCEEEecCCCCCCcceEEee
Q 008733 146 ALMESGNLVVKDGKDNNPDNILWQS 170 (555)
Q Consensus 146 ~L~d~GNlvl~~~~~~~~~~~~WqS 170 (555)
.-..+|.++-.|.. +++++|+-
T Consensus 115 v~~~~g~v~AlD~~---TG~~~W~~ 136 (488)
T cd00216 115 FGTFDGRLVALDAE---TGKQVWKF 136 (488)
T ss_pred EecCCCeEEEEECC---CCCEeeee
Confidence 12347888888865 58999983
No 127
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=32.74 E-value=5.8e+02 Score=26.46 Aligned_cols=18 Identities=28% Similarity=0.711 Sum_probs=10.5
Q ss_pred CccEEEEeC-CCCEEEeec
Q 008733 118 NGILVLLNS-TNDTVWSSN 135 (555)
Q Consensus 118 dG~Lvl~~~-~~~~~Wss~ 135 (555)
+|.|+.+|. +|..+|...
T Consensus 154 ~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 154 DGRLTALDAATGERLWTYS 172 (377)
T ss_pred CCeEEEEEcCCCceeeEEc
Confidence 566666664 456666544
No 128
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=31.58 E-value=2.1e+02 Score=25.98 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=18.3
Q ss_pred cCceEEEEEecCCCCceEEEEEccCCceEEEEe
Q 008733 261 NEKEAFYTYNLSNSSVPSRMVINPAGTVQRYTW 293 (555)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~rl~Ld~dG~lr~y~~ 293 (555)
+.+|+++-+. +..+....+++||..+....
T Consensus 60 ~sdEiw~~~~---G~pl~l~~i~~dg~~~~~~L 89 (139)
T PF06172_consen 60 DSDEIWHFHA---GDPLELHLIDPDGSYETVVL 89 (139)
T ss_dssp SSEEEEEEEE---ES-EEEEEECTTSTEEEEEE
T ss_pred CCCEEEEEEc---CCCEEEEEEcCCCCeEEEEE
Confidence 3445544332 34567788888888877655
No 129
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.81 E-value=8.8 Score=43.08 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=16.6
Q ss_pred eecCCCCCcEEEEEECCceE
Q 008733 524 KLGEGGFGPVYKVTLYYVIS 543 (555)
Q Consensus 524 ~IG~GgfG~VYKg~L~~g~~ 543 (555)
.||-|+||.|||++-.+-..
T Consensus 39 ELGDGAFGKVyKA~nket~~ 58 (1187)
T KOG0579|consen 39 ELGDGAFGKVYKAVNKETKL 58 (1187)
T ss_pred hhcCccchhhhhhhcccchh
Confidence 78999999999999765443
No 130
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=30.29 E-value=94 Score=40.49 Aligned_cols=26 Identities=19% Similarity=0.493 Sum_probs=19.4
Q ss_pred cccCCceeeecCC--CCCccccCCCCccC
Q 008733 318 ALCGAYASCNINS--NSPECECLQGFVPN 344 (555)
Q Consensus 318 ~~CG~~giC~~~~--~~~~C~C~~GF~~~ 344 (555)
..|---|.|+..+ ... |.||+-|.-+
T Consensus 3870 npCqhgG~C~~~~~ggy~-CkCpsqysG~ 3897 (4289)
T KOG1219|consen 3870 NPCQHGGTCISQPKGGYK-CKCPSQYSGN 3897 (4289)
T ss_pred CcccCCCEecCCCCCceE-EeCcccccCc
Confidence 6788889998753 334 9999988643
No 131
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=30.14 E-value=35 Score=41.78 Aligned_cols=48 Identities=27% Similarity=0.672 Sum_probs=31.5
Q ss_pred ccccc------ccccCCceeeecCCCCCccccCCCCccCCccccccCCCCCCcccCC
Q 008733 312 DQCDS------YALCGAYASCNINSNSPECECLQGFVPNSQREWDMQYKSGGCVRRT 362 (555)
Q Consensus 312 ~~C~~------~~~CG~~giC~~~~~~~~C~C~~GF~~~~~~~w~~~~~s~GC~~~~ 362 (555)
|.|+. .+.||++|-|....+..+|.|-|||.-..=+ ....++-|++..
T Consensus 1233 d~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGehCE---vs~~agrCvpGv 1286 (2531)
T KOG4289|consen 1233 DYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGEHCE---VSARAGRCVPGV 1286 (2531)
T ss_pred ccccchhHhhhcCCCCCCCceEEecCceeEEecCCcccccee---eecccCccccce
Confidence 55654 4899999999865333349999999753221 123456676654
No 132
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=30.01 E-value=85 Score=26.46 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=22.2
Q ss_pred cCCCeEEEEeCCCCCCCCCccEEEEcccCCccEEEEe
Q 008733 89 IAEGTVTWVANRDAPLSDRSGVLRINGERNGILVLLN 125 (555)
Q Consensus 89 ~~~~~~vW~anr~~p~~~~~~~l~l~~~~dG~Lvl~~ 125 (555)
.|..++.|+-+....+. ...++.++. +|||.+.+
T Consensus 31 ~P~P~i~W~~~~~~~i~-~~~Ri~~~~--~GnL~fs~ 64 (95)
T cd05845 31 AVPLRIYWMNSDLLHIT-QDERVSMGQ--NGNLYFAN 64 (95)
T ss_pred CCCCEEEEECCCCcccc-ccccEEECC--CceEEEEE
Confidence 35678889854433444 346788887 88887753
No 133
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=28.51 E-value=86 Score=33.62 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=18.6
Q ss_pred CCCCCeecCCCCCcEEEEEECCc
Q 008733 519 FSEKNKLGEGGFGPVYKVTLYYV 541 (555)
Q Consensus 519 Fs~~n~IG~GgfG~VYKg~L~~g 541 (555)
|.-...+-+|.||-||+|++.+.
T Consensus 286 v~l~~llqEGtFGri~~gI~~eE 308 (563)
T KOG1024|consen 286 VRLSCLLQEGTFGRIYRGIWREE 308 (563)
T ss_pred eechhhhhcCchhheeeeeeccc
Confidence 55556889999999999987544
No 134
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=26.95 E-value=49 Score=38.32 Aligned_cols=31 Identities=29% Similarity=0.689 Sum_probs=24.0
Q ss_pred cccccccccCCceeeecCCCCCccccCCCCcc
Q 008733 312 DQCDSYALCGAYASCNINSNSPECECLQGFVP 343 (555)
Q Consensus 312 ~~C~~~~~CG~~giC~~~~~~~~C~C~~GF~~ 343 (555)
|+|. +..|-++..|-+..+..+|.|.|||.-
T Consensus 828 DeC~-psrChp~A~CyntpgsfsC~C~pGy~G 858 (1289)
T KOG1214|consen 828 DECS-PSRCHPAATCYNTPGSFSCRCQPGYYG 858 (1289)
T ss_pred cccC-ccccCCCceEecCCCcceeecccCccC
Confidence 6677 788999999977655444999999964
No 135
>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]
Probab=26.60 E-value=16 Score=40.14 Aligned_cols=34 Identities=32% Similarity=0.532 Sum_probs=27.6
Q ss_pred hcCCCCCCeecCCCCCcEEEEEECCce-EEeeEEEEEe
Q 008733 516 TDNFSEKNKLGEGGFGPVYKVTLYYVI-SLYHFHVKRS 552 (555)
Q Consensus 516 T~~Fs~~n~IG~GgfG~VYKg~L~~g~-~~~~VAVKrL 552 (555)
.++|.....+|+||||+|+.+....+. . .|||||
T Consensus 48 a~~~e~~~~~~~~g~~~~~~~~n~~d~~~---~avkri 82 (516)
T KOG1033|consen 48 ANDFEPGQCLGRGGFGVVFSAQNKADENK---YAVKRI 82 (516)
T ss_pred hccccccccccccCccccCCccccccchh---hHHHHh
Confidence 456888889999999999998876554 5 788876
No 136
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=25.25 E-value=81 Score=32.24 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=28.7
Q ss_pred ccHHHHHHHhcCCCCCCeecCCCCCcEEEEEECC-ceEEeeEEEEEecC
Q 008733 507 FDLKIIANATDNFSEKNKLGEGGFGPVYKVTLYY-VISLYHFHVKRSSL 554 (555)
Q Consensus 507 fs~~eL~~AT~~Fs~~n~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL~~ 554 (555)
-...||+..- .||.|..|.|.|..... |.. +|||.+.+
T Consensus 89 ~dindl~~l~-------dlGsGtcG~V~k~~~rs~~~i---iAVK~M~r 127 (391)
T KOG0983|consen 89 ADINDLENLG-------DLGSGTCGQVWKMRFRSTGHI---IAVKQMRR 127 (391)
T ss_pred cChHHhhhHH-------hhcCCCccceEEEEEcccceE---EEEEeecc
Confidence 3456665433 69999999999998765 667 99998753
No 137
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.03 E-value=30 Score=35.06 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=24.8
Q ss_pred CCCeecCCCCCcEEEEEEC-CceEEeeEEEEEec
Q 008733 521 EKNKLGEGGFGPVYKVTLY-YVISLYHFHVKRSS 553 (555)
Q Consensus 521 ~~n~IG~GgfG~VYKg~L~-~g~~~~~VAVKrL~ 553 (555)
.+.-||-|+||.|+..+-| +|+. ||.||+-
T Consensus 57 PDRPIGYGAFGVVWsVTDPRdgrr---valkK~p 87 (449)
T KOG0664|consen 57 PDRPIGYGAFGVVWSVTDPRSGKR---VALKKMP 87 (449)
T ss_pred CCCcccccceeEEEeccCCCCccc---hhHhhcc
Confidence 3568999999999988765 5777 9999874
No 138
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=24.54 E-value=51 Score=33.96 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=24.0
Q ss_pred CeecCCCCCcEEEEEEC-CceEEeeEEEEEecC
Q 008733 523 NKLGEGGFGPVYKVTLY-YVISLYHFHVKRSSL 554 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L~-~g~~~~~VAVKrL~~ 554 (555)
..||.|+||.|--.... +|.. .|.|.|++
T Consensus 50 ~tlGtGSFGrV~LVr~k~~g~y---YAmKvL~k 79 (355)
T KOG0616|consen 50 KTLGTGSFGRVHLVREKHSGNY---YAMKVLDK 79 (355)
T ss_pred eeeccCccceEEEEEEccCCce---eehhhcCH
Confidence 48999999999987774 5666 99999875
No 139
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=23.60 E-value=33 Score=36.70 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=24.1
Q ss_pred eecCCCCCcEEEEEE-CCceEEeeEEEEEecC
Q 008733 524 KLGEGGFGPVYKVTL-YYVISLYHFHVKRSSL 554 (555)
Q Consensus 524 ~IG~GgfG~VYKg~L-~~g~~~~~VAVKrL~~ 554 (555)
.||+|.+|.|-++.= ..|++ ||||.+.+
T Consensus 60 tLGkGTYGKVk~A~e~~sgR~---VAiKsIrK 88 (668)
T KOG0611|consen 60 TLGKGTYGKVKLAYEHKSGRE---VAIKSIRK 88 (668)
T ss_pred HhcCCcccceeehhhccCCcE---eehhhhhh
Confidence 899999999999876 57899 99997754
No 140
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=23.19 E-value=35 Score=41.71 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=26.4
Q ss_pred HhcCCCCCCeecCCCCCcEEEEEECC-ceEEeeEEEEEe
Q 008733 515 ATDNFSEKNKLGEGGFGPVYKVTLYY-VISLYHFHVKRS 552 (555)
Q Consensus 515 AT~~Fs~~n~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL 552 (555)
.|-..-..++||.|-||.||-++-.+ |+. .|||-+
T Consensus 1233 V~~rWqrg~~Ig~G~fG~VYtavN~~tGel---lAvKEI 1268 (1509)
T KOG4645|consen 1233 VTFRWQRGNFIGGGTFGKVYTAVNLDTGEL---LAVKEI 1268 (1509)
T ss_pred ceeeeccccccCCcceeeeEEeecCCccch---hhhhhh
Confidence 34445556899999999999988655 555 899854
No 141
>PHA02887 EGF-like protein; Provisional
Probab=23.13 E-value=87 Score=27.45 Aligned_cols=30 Identities=20% Similarity=0.640 Sum_probs=22.1
Q ss_pred cccccc--ccccCCceeeecC---CCCCccccCCCCc
Q 008733 311 LDQCDS--YALCGAYASCNIN---SNSPECECLQGFV 342 (555)
Q Consensus 311 ~~~C~~--~~~CG~~giC~~~---~~~~~C~C~~GF~ 342 (555)
-.+|.- .++|= +|.|-+- +.+. |.|++||.
T Consensus 83 f~pC~~eyk~YCi-HG~C~yI~dL~eps-CrC~~GYt 117 (126)
T PHA02887 83 FEKCKNDFNDFCI-NGECMNIIDLDEKF-CICNKGYT 117 (126)
T ss_pred ccccChHhhCEee-CCEEEccccCCCce-eECCCCcc
Confidence 346754 57887 7899763 4577 99999995
No 142
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=22.87 E-value=75 Score=32.49 Aligned_cols=26 Identities=27% Similarity=0.123 Sum_probs=24.2
Q ss_pred CeecCCCCCcEEEEEECCceEEeeEEEEE
Q 008733 523 NKLGEGGFGPVYKVTLYYVISLYHFHVKR 551 (555)
Q Consensus 523 n~IG~GgfG~VYKg~L~~g~~~~~VAVKr 551 (555)
++||.|.=+.||.|.-++|.. +|||-
T Consensus 97 ~~IGvGKEsdVY~~~~~~g~~---~~vKf 122 (304)
T COG0478 97 TKIGVGKESDVYVAIDPKGRK---VAVKF 122 (304)
T ss_pred cccccCccceEEEEECCCCCE---EEEEE
Confidence 599999999999999999999 99983
No 143
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=22.39 E-value=50 Score=33.02 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=18.6
Q ss_pred CCCCCCeecCCCCCcEEEEEECC
Q 008733 518 NFSEKNKLGEGGFGPVYKVTLYY 540 (555)
Q Consensus 518 ~Fs~~n~IG~GgfG~VYKg~L~~ 540 (555)
+|.-...||+|.||.||-|.-..
T Consensus 23 dfeigr~LgkgkFG~vYlarekk 45 (281)
T KOG0580|consen 23 DFEIGRPLGKGKFGNVYLAREKK 45 (281)
T ss_pred hccccccccCCccccEeEeeecc
Confidence 45556799999999999887654
No 144
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=21.99 E-value=1.5e+02 Score=18.76 Aligned_cols=16 Identities=31% Similarity=0.827 Sum_probs=7.9
Q ss_pred CccEEEEeC-CCCEEEe
Q 008733 118 NGILVLLNS-TNDTVWS 133 (555)
Q Consensus 118 dG~Lvl~~~-~~~~~Ws 133 (555)
+|.|+-+|. +|..+|.
T Consensus 15 ~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 15 DGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEEcccCcEEEE
Confidence 455554444 4445554
No 145
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=21.56 E-value=33 Score=32.61 Aligned_cols=36 Identities=33% Similarity=0.880 Sum_probs=24.1
Q ss_pred ccccCCceeeecCCC-----CCccccCCCCccCCccccccCCCCCCcccCC
Q 008733 317 YALCGAYASCNINSN-----SPECECLQGFVPNSQREWDMQYKSGGCVRRT 362 (555)
Q Consensus 317 ~~~CG~~giC~~~~~-----~~~C~C~~GF~~~~~~~w~~~~~s~GC~~~~ 362 (555)
.-.||.|+.|..... ...|.|.+||.... .-|+|..
T Consensus 49 ~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~----------~vCvp~~ 89 (197)
T PF06247_consen 49 NKPCGDYAKCINQANKGEERAYKCDCINGYILKQ----------GVCVPNK 89 (197)
T ss_dssp TSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESS----------SSEEEGG
T ss_pred CccccchhhhhcCCCcccceeEEEecccCceeeC----------CeEchhh
Confidence 468999999986532 11399999998642 4687654
No 146
>PHA00149 DNA encapsidation protein
Probab=21.38 E-value=3.1e+02 Score=28.22 Aligned_cols=40 Identities=20% Similarity=0.437 Sum_probs=32.2
Q ss_pred EeCCCeEEEEEEcCCCCCceEEEEEEeecCCCeEEEEeCCCCCCCC
Q 008733 61 VSAKESFELGFFSPGNSKSRYLGIWYKKIAEGTVTWVANRDAPLSD 106 (555)
Q Consensus 61 ~S~~g~F~lgF~~~~~~~~~~l~iw~~~~~~~~~vW~anr~~p~~~ 106 (555)
.+.++.|.+.++.+++ |+++|..- .+..||.|.+-.|-..
T Consensus 234 ~~~~~k~~ysi~~~g~----~~~vwvd~--~~~~~y~~~~~dp~~~ 273 (331)
T PHA00149 234 RSKNSKFVFSIRYNGN----YYTVWVDL--TQMLVYIATAHDPSTK 273 (331)
T ss_pred hccCceEEEEEEECCe----EEEEEEEc--cceEEEEecccCCCCC
Confidence 4789999999988874 89999643 5678999998877554
No 147
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=21.34 E-value=4.6e+02 Score=27.34 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=48.0
Q ss_pred cCCCeEEEEeCCC-------CCCCCCccEEEEcccCCccEEEEeC-CCCEEEeecCCC---CCCc-----cEEEEe-cCC
Q 008733 89 IAEGTVTWVANRD-------APLSDRSGVLRINGERNGILVLLNS-TNDTVWSSNSSI---SAQK-----PVAALM-ESG 151 (555)
Q Consensus 89 ~~~~~~vW~anr~-------~p~~~~~~~l~l~~~~dG~Lvl~~~-~~~~~Wss~~~~---~~~~-----~~~~L~-d~G 151 (555)
.....++|.-.-. .|+....+++.+... +|.|..+|. +|+.+|+.+... -.+. ...... ++|
T Consensus 85 ~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~-~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g 163 (370)
T COG1520 85 PDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW-DGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDG 163 (370)
T ss_pred CCCCcEEecccCcCcceeccCceEEeCCeEEEecc-cceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCC
Confidence 3445668943322 233333467777753 787888888 899999988644 0111 112223 678
Q ss_pred CEEEecCCCCCCcceEEe
Q 008733 152 NLVVKDGKDNNPDNILWQ 169 (555)
Q Consensus 152 Nlvl~~~~~~~~~~~~Wq 169 (555)
.++-.+.+ ++..+|+
T Consensus 164 ~~~al~~~---tG~~~W~ 178 (370)
T COG1520 164 HLYALNAD---TGTLKWT 178 (370)
T ss_pred eEEEEEcc---CCcEEEE
Confidence 99888875 4889997
No 148
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=20.75 E-value=21 Score=42.81 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=26.5
Q ss_pred CCCCCCeecCCCCCcEEEEEECC-ceEEeeEEEEEecC
Q 008733 518 NFSEKNKLGEGGFGPVYKVTLYY-VISLYHFHVKRSSL 554 (555)
Q Consensus 518 ~Fs~~n~IG~GgfG~VYKg~L~~-g~~~~~VAVKrL~~ 554 (555)
+|.--.+||+|+||-|.-..... +++ .|.|+|++
T Consensus 76 DfeilKvIGrGaFGEV~lVr~k~t~~V---YAMK~lnK 110 (1317)
T KOG0612|consen 76 DFEILKVIGRGAFGEVALVRHKSTEKV---YAMKILNK 110 (1317)
T ss_pred hhHHHHHhcccccceeEEEEeeccccc---hhHHHhhH
Confidence 34434599999999999988855 555 89999876
Done!