Query 008734
Match_columns 555
No_of_seqs 191 out of 1611
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 10:29:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 3E-112 1E-116 909.5 41.6 481 46-548 2-485 (485)
2 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 6E-110 2E-114 887.7 40.7 473 47-546 2-476 (478)
3 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 4E-108 1E-112 871.7 37.0 466 50-547 1-467 (471)
4 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 1E-104 5E-109 849.1 30.1 462 44-544 4-466 (476)
5 2dc0_A Probable amidase; struc 100.0 3E-103 1E-107 827.8 38.2 426 50-539 1-433 (434)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 2E-102 6E-107 836.7 40.7 454 46-548 5-483 (493)
7 1m22_A Peptide amidase, PAM; e 100.0 2E-102 8E-107 836.7 41.7 465 45-548 6-492 (503)
8 3a1k_A Amidase; AS family enzy 100.0 2E-100 8E-105 821.2 19.7 480 49-551 12-513 (521)
9 1o9p_A Malonamidase E2; malona 100.0 8.1E-97 3E-101 773.9 36.2 409 50-541 2-412 (414)
10 3ppm_A Fatty-acid amide hydrol 100.0 8.2E-97 3E-101 796.5 33.7 461 45-543 66-570 (573)
11 3shg_B VBHA; ampylation, adeny 55.1 15 0.00051 26.1 3.9 28 52-79 32-59 (61)
12 2kvu_A MKL/myocardin-like prot 49.7 16 0.00056 27.3 3.7 49 32-80 11-59 (75)
13 1nha_A TFIIF-alpha, transcript 22.6 1.2E+02 0.004 23.0 4.5 35 48-82 31-67 (82)
14 3n2l_A OPRT, oprtase, orotate 22.5 3.4E+02 0.011 25.0 8.8 22 149-170 160-181 (238)
No 1
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=3.3e-112 Score=909.49 Aligned_cols=481 Identities=47% Similarity=0.805 Sum_probs=439.2
Q ss_pred CCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEec-CHHHHHHHHhhhHHH-HcCCCCCCccccEEEEec
Q 008734 46 SPPESQILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKI-KRNENVGPLAGVLVGVKD 123 (555)
Q Consensus 46 ~~~~~s~~~l~~~~~~g~~t~~el~~~~l~ri~~~~~~~na~~~~-~~~al~~A~~~d~~~-~~g~~~gpL~GiPi~vKD 123 (555)
++..+|+.+|+++|++|++|++||+++||+||+++|+.+|||+++ .|+|+++|+++|+++ ++|+. ||||||||+|||
T Consensus 2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD 80 (485)
T 3ip4_A 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKD 80 (485)
T ss_dssp CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEET
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEc
Confidence 367899999999999999999999999999999999999999999 889999999999999 78988 999999999999
Q ss_pred CccCCCcccCcccchhcCCCCCCchHHHHHHHHCCCeEEEecccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHH
Q 008734 124 NICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAA 203 (555)
Q Consensus 124 ~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaa 203 (555)
||+|+|++||+||..++++++.+|+++|+|||+||||++||||||||+++..|+|++||+|+||||+.|+|||||||||+
T Consensus 81 ~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsAa 160 (485)
T 3ip4_A 81 NIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAA 160 (485)
T ss_dssp TBCBTTBCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHH
T ss_pred CcccCCCccCCCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcceeccccCCCcccccccccCcceeccCCCcccCCCCcccCCCCceeccccCCHHHHHHHHHHHcCCCCCCcch
Q 008734 204 AVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATS 283 (555)
Q Consensus 204 aVaag~~~~alGtDtgGSiR~PAa~~Gv~g~kPT~g~v~~~g~~~~s~~~d~~Gpmarsv~Dla~ll~~l~g~d~~D~~s 283 (555)
+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|+|+|+.|+.+
T Consensus 161 aVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~~~ 240 (485)
T 3ip4_A 161 AVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTS 240 (485)
T ss_dssp HHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTS
T ss_pred HhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred hhhHHhhhhcccCCCCchhHHHHHhhhhcCCCCCCcEEEEecccccCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcc
Q 008734 284 SKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSFS 363 (555)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lRIGv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~Vvev~lp~~~ 363 (555)
.+. +.++|...+ ..+++++||||+.+++...++++++++++++++.|+++||+|+++++|.+.
T Consensus 241 ~~~----------~~~~~~~~~-------~~~~~~lrigv~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p~~~ 303 (485)
T 3ip4_A 241 APV----------DDVDFTSEI-------GKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTK 303 (485)
T ss_dssp CCC----------CCCCCSTTT-------TCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHTTCEEEEECCTTGG
T ss_pred ccc----------Cccchhhhh-------ccCccCcEEEEECCcccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCcHH
Confidence 644 566666554 457899999999987767899999999999999999999999999999887
Q ss_pred chhhHHHHHHHhhhhccccccccccccCcch-hhhHHHHHhhhhccCCCHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHH
Q 008734 364 LGLPAYYILASSESSSNLSRYDGVRYGNQAA-AEDLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRT 442 (555)
Q Consensus 364 ~~~~~~~~l~~~e~~~~l~~~~~~~~g~~~~-~~~l~~l~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~y~~a~~~r~ 442 (555)
+....|+.++..|+..++.+|++..++.+.. ...+.+++...+.+.++++++.++..|.+.....++..+|.++++.|.
T Consensus 304 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~ 383 (485)
T 3ip4_A 304 FGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRT 383 (485)
T ss_dssp GHHHHHHHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 7788888999999999999998877766432 345666665555566899999999888765555555567899999999
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCccccCcccCCcccccccccccccccccCCCeEeecCcccCCCCCCCceeEEEEcCC
Q 008734 443 LIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAA 522 (555)
Q Consensus 443 ~~~~~~~~~~~~~D~Ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~~~~GlPvGvQlvg~~ 522 (555)
.+++.+.++|+++|+||+|++|.+||++++...++...+....||.+||++|+|+++||+|+. +|||+||||+|++
T Consensus 384 ~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~----~GlPvGlqlvg~~ 459 (485)
T 3ip4_A 384 LIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS----NGRPIGLQFIGKP 459 (485)
T ss_dssp HHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE----TTEEEEEEEECST
T ss_pred HHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHhhhhhhhhhhHhhCCCeEEEeCCcC----CCCCEeEEEEcCC
Confidence 999999999999999999999999999988655555445555699999999999999999997 5999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCc
Q 008734 523 FDEGKLLKVGHIFEQTLQGCRFVPPL 548 (555)
Q Consensus 523 ~~D~~LL~~A~~lE~~~~~~~~~P~~ 548 (555)
|+|++||++|++||+.++|+++.|++
T Consensus 460 ~~d~~lL~~A~~lE~~~~~~~~~p~~ 485 (485)
T 3ip4_A 460 FDEKTLYRVAYQYETQYNLHDVYEKL 485 (485)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTTGGGC
T ss_pred CCHHHHHHHHHHHHHhcCcccCCCCC
Confidence 99999999999999999998777764
No 2
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=6.3e-110 Score=887.71 Aligned_cols=473 Identities=48% Similarity=0.827 Sum_probs=432.6
Q ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEec-CHHHHHHHHhhhHHHHcCCCCCCccccEEEEecCc
Q 008734 47 PPESQILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNI 125 (555)
Q Consensus 47 ~~~~s~~~l~~~~~~g~~t~~el~~~~l~ri~~~~~~~na~~~~-~~~al~~A~~~d~~~~~g~~~gpL~GiPi~vKD~~ 125 (555)
+..+|+.+|+++|++|++|++||+++||+||+++|+.+|||+++ .|+|+++|+++|++ .||||||||+|||+|
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~------~gpL~GvPi~vKD~~ 75 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER------ELPLFGIPIAVKDNI 75 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCT------TSTTTTCEEEEETTB
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchh------cCCcCCceEEEEcCc
Confidence 56789999999999999999999999999999999999999999 88999999999975 589999999999999
Q ss_pred cCCCcccCcccchhcCCCCCCchHHHHHHHHCCCeEEEecccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHH
Q 008734 126 CTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAV 205 (555)
Q Consensus 126 ~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaV 205 (555)
+++|++||+||+.++++++.+|+++|+||++||||++||||||||+++..+.|+.||+|+||||+.|+|||||||||++|
T Consensus 76 ~~~G~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaV 155 (478)
T 3h0l_A 76 LVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASV 155 (478)
T ss_dssp CCTTSBCCTTCGGGTTCBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHHHH
T ss_pred cCCCCCcCCcCHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcceeccccCCCcccccccccCcceeccCCCcccCCCCcccCCCCceeccccCCHHHHHHHHHHHcCCCCCCcchhh
Q 008734 206 SARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSK 285 (555)
Q Consensus 206 aag~~~~alGtDtgGSiR~PAa~~Gv~g~kPT~g~v~~~g~~~~s~~~d~~Gpmarsv~Dla~ll~~l~g~d~~D~~s~~ 285 (555)
|+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|+|+|+.|+.+.+
T Consensus 156 Aag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~ 235 (478)
T 3h0l_A 156 AVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAK 235 (478)
T ss_dssp HHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCC
T ss_pred HCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred hHHhhhhcccCCCCchhHHHHHhhhhcCCCCCCcEEEEecccccCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCccch
Q 008734 286 QVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSFSLG 365 (555)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lRIGv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~Vvev~lp~~~~~ 365 (555)
. +.++|...+ ..+++++||||+.+++...++++++++++++++.|+++||+|+++++|.+.+.
T Consensus 236 ~----------p~~~~~~~~-------~~~~~~lrIgv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~v~~p~~~~~ 298 (478)
T 3h0l_A 236 V----------PVPEWSEEV-------KKEVKGLKIGLPKEFFEYELQPQVKEAFENFIKELEKEGFEIKEVSLPHVKYS 298 (478)
T ss_dssp C----------CCCCHHHHT-------TCCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGH
T ss_pred c----------Cccchhhhh-------ccCCCCCEEEEECCcccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCcHHHH
Confidence 4 667777665 56789999999998776789999999999999999999999999999988777
Q ss_pred hhHHHHHHHhhhhccccccccccccCcch-hhhHHHHHhhhhccCCCHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHHH
Q 008734 366 LPAYYILASSESSSNLSRYDGVRYGNQAA-AEDLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLI 444 (555)
Q Consensus 366 ~~~~~~l~~~e~~~~l~~~~~~~~g~~~~-~~~l~~l~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~y~~a~~~r~~~ 444 (555)
...|+.++..|+..++.+|++..++.+.. ...+.+++...+.+.++++++.++..|.+.....++..+|.++++.|..+
T Consensus 299 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~ 378 (478)
T 3h0l_A 299 IPTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLI 378 (478)
T ss_dssp HHHHHHHHHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHH
Confidence 88889999999999999999887766432 34566666555556689999999988876655555666789999999999
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCccccCcccCCcccccccccccccccccCCCeEeecCcccCCCCCCCceeEEEEcCCCC
Q 008734 445 QKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFD 524 (555)
Q Consensus 445 ~~~~~~~~~~~D~Ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~~~~GlPvGvQlvg~~~~ 524 (555)
++.+.++|+++|+||+||+|.+||++++...++...+....||.+||++|+|+++||+|+ . +|||+||||+|++|+
T Consensus 379 ~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~---~GlPvGlQlvg~~~~ 454 (478)
T 3h0l_A 379 TNDFLKAFEEVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW-K---DGLPVGGQLIGKHWD 454 (478)
T ss_dssp HHHHHHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHHGGGTTTHHHHHHTCCEEEEEEEE-E---TTEEEEEEEEECTTC
T ss_pred HHHHHHHHhcCCEEEcCCCCCCCCCcccccCChHhhhhhhhhhhhhHhhCCCeEEEeCCC-C---CCCCeEEEEECCCCC
Confidence 999999999999999999999999998865555544555569999999999999999999 4 799999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCC
Q 008734 525 EGKLLKVGHIFEQTLQGCRFVP 546 (555)
Q Consensus 525 D~~LL~~A~~lE~~~~~~~~~P 546 (555)
|+.||++|++||+.++|+++.|
T Consensus 455 D~~LL~~A~~lE~~~~~~~~~p 476 (478)
T 3h0l_A 455 ETTLLQISYLWEQKFKHYEKIP 476 (478)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCS
T ss_pred HHHHHHHHHHHHHhcCcccCCC
Confidence 9999999999999999865544
No 3
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=3.6e-108 Score=871.71 Aligned_cols=466 Identities=50% Similarity=0.820 Sum_probs=421.0
Q ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEecCHHHHHHHHhhhHHHHcCCCCCCccccEEEEecCccCCC
Q 008734 50 SQILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVD 129 (555)
Q Consensus 50 ~s~~~l~~~~~~g~~t~~el~~~~l~ri~~~~~~~na~~~~~~~al~~A~~~d~~~~~g~~~gpL~GiPi~vKD~~~v~G 129 (555)
|++.+|+++|++|++|++||+++||+||+++|+.+|||+++.|+|+++|+++|+++ |||||||+|||+|+++|
T Consensus 1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~al~~A~~~d~~~-------pL~GvPi~vKD~~~~~G 73 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVDPGL-------PLAGLVVAVKDNIATRG 73 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECCTTTHHHHTSCCSC-------TTTTCEEEEETTBCCTT
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHhcCccC-------CcCCCeEEEECCcccCC
Confidence 68999999999999999999999999999999999999999888999999999643 99999999999999999
Q ss_pred cccCcccchhcCCCCCCchHHHHHHHHCCCeEEEecccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcC
Q 008734 130 MPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQ 209 (555)
Q Consensus 130 ~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~ 209 (555)
++||+||+.++++++.+|+++|+||+++|||++||||||||+++..++|+.||.|+||||+.|+|||||||||++||+|+
T Consensus 74 ~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~ 153 (471)
T 3kfu_E 74 LRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADL 153 (471)
T ss_dssp SCCCTTCSTTTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTS
T ss_pred ccccccCHhHcCCCCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccccCCCcccccccccCcceeccCCCcccCCCCcccCCCCceeccccCCHHHHHHHHHHHcCCCCCCcchhhhHHh
Q 008734 210 CVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRV 289 (555)
Q Consensus 210 ~~~alGtDtgGSiR~PAa~~Gv~g~kPT~g~v~~~g~~~~s~~~d~~Gpmarsv~Dla~ll~~l~g~d~~D~~s~~~~~~ 289 (555)
+++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|+|+|+.|+.+.+.
T Consensus 154 ~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~--- 230 (471)
T 3kfu_E 154 APLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDL--- 230 (471)
T ss_dssp CSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCCCC---
T ss_pred CccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCcccccccCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred hhhcccCCCCchhHHHHHhhhhcCCCCCCcEEEEecccccCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCccchhhHH
Q 008734 290 LQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSFSLGLPAY 369 (555)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lRIGv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~Vvev~lp~~~~~~~~~ 369 (555)
+ ++|...+ ..+++++||||+.+++ ..++++++++++++++.|+++||+|+++++|.+.+....|
T Consensus 231 -------~-~~~~~~~-------~~~~~~lrIgv~~~~~-~~~~p~v~~a~~~a~~~L~~~G~~v~~v~~p~~~~~~~~~ 294 (471)
T 3kfu_E 231 -------P-PRFQEAL-------EGPLPPLRLGVVREAL-AGNSPGVERALEEALKVFRELGLSVREVSWPSLPQALAAY 294 (471)
T ss_dssp -------C-CCTTCCS-------CCCCSSCEEEEEGGGT-TTCCHHHHHHHHHHHHHHHTTTCEEEEECCTTGGGHHHHH
T ss_pred -------C-cchhhhh-------ccCCCCCEEEEECCcc-CCCCHHHHHHHHHHHHHHHHcCCeeeeecCccHHHHHHHH
Confidence 4 4554333 3467899999999877 7899999999999999999999999999999888888888
Q ss_pred HHHHHhhhhccccccccccccCcchhhhHHHHHhhhhccCCCHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 008734 370 YILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFK 449 (555)
Q Consensus 370 ~~l~~~e~~~~l~~~~~~~~g~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~y~~a~~~r~~~~~~~~ 449 (555)
+.++..|+..++.+|++..++.+.....+.+++...+.. ++++++.++..|.......++..+|.++++.|..+++.+.
T Consensus 295 ~~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~ 373 (471)
T 3kfu_E 295 YILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRAL-FGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQ 373 (471)
T ss_dssp HHHHHHHHHHHGGGCSTTTTSCCCCCSSSHHHHHHHHTT-SCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhhh-cCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999888777643223455555555555 8999999998887665555556689999999999999999
Q ss_pred HHhcCCCEEEeCCCCCCccccCcccCCcccccccccccccccccCCCeEeecCcccCCCCCCCceeEEEEcCCCCHHHHH
Q 008734 450 TALDENDILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLL 529 (555)
Q Consensus 450 ~~~~~~D~Ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~~~~GlPvGvQlvg~~~~D~~LL 529 (555)
++|+++|+||+|++|.+||++++... +...+....||.+||++|+|+++||+|+ . +|+|+||||+|++|+|+.||
T Consensus 374 ~~~~~~Dvll~Pt~~~~a~~~~~~~~-~~~~~~~~~~t~~~nl~G~PaisvP~g~-~---~GlPvGlQlvg~~~~D~~LL 448 (471)
T 3kfu_E 374 ALFREVDLLLLPTTPHPAFPFGARRD-PLAMYREDLYTVGANLTGLPALSFPAGF-E---GHLPVGLQLLAPWGEDERLL 448 (471)
T ss_dssp HHTTTCSEEEEESCSSSCCBTTTTCS-HHHHHGGGTTTHHHHHHCCCEEEEEEEE-E---TTEEEEEEEECSTTCHHHHH
T ss_pred HHHhcCCEEEeCCcCCCCCccccccc-hHHHHHHhhhhhcchhhCCCeEEEeCCC-C---CCCCeEEEEECCCCCHHHHH
Confidence 99999999999999999999987533 4444444559999999999999999999 6 89999999999999999999
Q ss_pred HHHHHHHHHc-CCCCCCCC
Q 008734 530 KVGHIFEQTL-QGCRFVPP 547 (555)
Q Consensus 530 ~~A~~lE~~~-~~~~~~P~ 547 (555)
++|++||+.+ +|.++.|+
T Consensus 449 ~~A~~lE~~~g~w~~~~p~ 467 (471)
T 3kfu_E 449 RAALAFEEATARAHLKAPL 467 (471)
T ss_dssp HHHHHHHHHSSCCCCCTTC
T ss_pred HHHHHHHHHhcCcccCCCc
Confidence 9999999999 77766665
No 4
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=1.5e-104 Score=849.11 Aligned_cols=462 Identities=47% Similarity=0.770 Sum_probs=393.6
Q ss_pred CCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEec-CHHHHHHHHhhhHHHHcCCCCCCccccEEEEe
Q 008734 44 STSPPESQILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVK 122 (555)
Q Consensus 44 ~~~~~~~s~~~l~~~~~~g~~t~~el~~~~l~ri~~~~~~~na~~~~-~~~al~~A~~~d~~~~~g~~~gpL~GiPi~vK 122 (555)
++++..+|+.+| |++|++|++||+++||+||+++|+.+|||+++ .++|+ |+ + ||||||||+||
T Consensus 4 ~~~~~~~s~~~l---i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~al------d~-----~--gpL~GvPi~vK 67 (476)
T 2gi3_A 4 DLDFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV------EK-----K--GKFWGIPVAIK 67 (476)
T ss_dssp CSCGGGCCHHHH---TTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC------CC-----C--STTTTCEEEEE
T ss_pred ccccccCCHHHH---HHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhh------hc-----c--CCcCCceEEEE
Confidence 346777899999 99999999999999999999999999999999 77777 32 2 89999999999
Q ss_pred cCccCCCcccCcccchhcCCCCCCchHHHHHHHHCCCeEEEecccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchHHH
Q 008734 123 DNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSA 202 (555)
Q Consensus 123 D~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsa 202 (555)
|||+|+|++||+||..++++++.+||++|+|||+||||++||||||||+++..++|++||+|+||||+.|+|||||||||
T Consensus 68 D~~~v~G~~Tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsA 147 (476)
T 2gi3_A 68 DNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSA 147 (476)
T ss_dssp TTBCCSSSCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHH
T ss_pred cCccCCCCccCccChhhcCCCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcceeccccCCCcccccccccCcceeccCCCcccCCCCcccCCCCceeccccCCHHHHHHHHHHHcCCCCCCcc
Q 008734 203 AAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDAT 282 (555)
Q Consensus 203 aaVaag~~~~alGtDtgGSiR~PAa~~Gv~g~kPT~g~v~~~g~~~~s~~~d~~Gpmarsv~Dla~ll~~l~g~d~~D~~ 282 (555)
+|||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|+|.|+.|+.
T Consensus 148 aAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~ 227 (476)
T 2gi3_A 148 AAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDAT 227 (476)
T ss_dssp HHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTT
T ss_pred HHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhhhHHhhhhcccCCCCchhHHHHHhhhhcCCCCCCcEEEEecccccCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCc
Q 008734 283 SSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSF 362 (555)
Q Consensus 283 s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lRIGv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~Vvev~lp~~ 362 (555)
+.+. |. +|...+ ..+++++||||+.++++..++++++++++++++.|+++|++|+++++|..
T Consensus 228 ~~~~----------p~-~~~~~~-------~~~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p~~ 289 (476)
T 2gi3_A 228 TVNR----------KV-DFLSEI-------EEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHI 289 (476)
T ss_dssp CCSC----------CC-CSSTTT-------TSCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEECCTTG
T ss_pred ccCC----------Cc-chhhhh-------hcCCCCCEEEEECccccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCch
Confidence 5432 32 344333 34678999999998766789999999999999999999999999999887
Q ss_pred cchhhHHHHHHHhhhhccccccccccccCcchhhhHHHHHhhhhccCCCHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHH
Q 008734 363 SLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRT 442 (555)
Q Consensus 363 ~~~~~~~~~l~~~e~~~~l~~~~~~~~g~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~y~~a~~~r~ 442 (555)
.+....++.++..|...++.+|++..++.+....++.+++...+.+.+++.++.++..|.......++..+|.++++.|.
T Consensus 290 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~ 369 (476)
T 2gi3_A 290 KYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRR 369 (476)
T ss_dssp GGHHHHHHHHHHHHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 77677788888899999998888766654311123334444334456788898888887655444344457899999999
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCccccCcccCCcccccccccccccccccCCCeEeecCcccCCCCCCCceeEEEEcCC
Q 008734 443 LIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAA 522 (555)
Q Consensus 443 ~~~~~~~~~~~~~D~Ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~~~~GlPvGvQlvg~~ 522 (555)
.+++++.++|+++|+||+|++|.+||++++ ..++...+....||.+||++|+|+++||+|+. +|||+||||+|++
T Consensus 370 ~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~-~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~----~GlPvGvqlvg~~ 444 (476)
T 2gi3_A 370 KISDELNEVLSQYDAILTPTSPVTAFKIGE-IKDPLTYYLMDIFTIPANLAGLPAISVPFGFS----NNLPVGVQVIGRR 444 (476)
T ss_dssp HHHHHHHHHHHHSSEEEEESCSSCCCBTTT-CCCHHHHHTTTTTTHHHHHHTCCEEEEEEEEE----TTEEEEEEEECCT
T ss_pred HHHHHHHHHHhcCCEEEeCCCCCCCCcccc-cccchhhhhccceeccccccCCceEEEecccC----CCCCeEEEEEcCC
Confidence 999999999999999999999999999987 33444334445689999999999999999987 5999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCC
Q 008734 523 FDEGKLLKVGHIFEQTLQGCRF 544 (555)
Q Consensus 523 ~~D~~LL~~A~~lE~~~~~~~~ 544 (555)
|+|+.||++|++||++++|+++
T Consensus 445 ~~d~~lL~~A~~lE~~~~~~~~ 466 (476)
T 2gi3_A 445 FADGKVFRIARAIEKNSPYNEN 466 (476)
T ss_dssp TCHHHHHHHHHHHHHHCTTSBT
T ss_pred CCHHHHHHHHHHHHHhcCcccc
Confidence 9999999999999999988643
No 5
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=3.4e-103 Score=827.82 Aligned_cols=426 Identities=31% Similarity=0.459 Sum_probs=383.2
Q ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEec-CHHHHHHHHhhhHHHHcCCCCCCccccEEEEecCccCC
Q 008734 50 SQILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTV 128 (555)
Q Consensus 50 ~s~~~l~~~~~~g~~t~~el~~~~l~ri~~~~~~~na~~~~-~~~al~~A~~~d~~~~~g~~~gpL~GiPi~vKD~~~v~ 128 (555)
+|+.+|+++|++|++|++||+++||+||+++|+ +|||+++ .|+|+++|+++|+++++|+.+||||||||+|||+|+|+
T Consensus 1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~ 79 (434)
T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVK 79 (434)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBT
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccC
Confidence 589999999999999999999999999999999 9999999 89999999999999999999999999999999999999
Q ss_pred CcccCcccchhcCCCC-CCchHHHHHHHHCCCeEEEecccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHh
Q 008734 129 DMPSTAGSRVLENYRP-PFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSA 207 (555)
Q Consensus 129 G~~tt~Gs~~~~~~~~-~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVaa 207 (555)
|++||+||..+ +++ .+|+++|+|||+||||++||||||||+++..++|++||+|+||||+.|+|||||||||++||+
T Consensus 80 G~~tt~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAa 157 (434)
T 2dc0_A 80 GMPTRAGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVAL 157 (434)
T ss_dssp TBCCCTTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHHH
T ss_pred CcccCCCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHc
Confidence 99999999999 677 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeccccCCCcccccccccCcceeccCCCcccCCCCcccCCCCceeccccCCHHHHHHHHHHHcCCCCCCcchhhhH
Q 008734 208 RQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQV 287 (555)
Q Consensus 208 g~~~~alGtDtgGSiR~PAa~~Gv~g~kPT~g~v~~~g~~~~s~~~d~~Gpmarsv~Dla~ll~~l~g~d~~D~~s~~~~ 287 (555)
|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|.|+ +.|+.
T Consensus 158 g~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~~----- 231 (434)
T 2dc0_A 158 GIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPLE----- 231 (434)
T ss_dssp TSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCCC-----
T ss_pred CCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 55531
Q ss_pred HhhhhcccCCCCchhHHHHHhhhhcCCCCCCcEEEEecccccCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCccchhh
Q 008734 288 RVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSFSLGLP 367 (555)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lRIGv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~Vvev~lp~~~~~~~ 367 (555)
+++++||||+.++++..++++++++++++++.|+++|++|+++++| +.+...
T Consensus 232 ---------------------------~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p-~~~~~~ 283 (434)
T 2dc0_A 232 ---------------------------GVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLP-LEGVYE 283 (434)
T ss_dssp ---------------------------CCCSCEEEECHHHHTTCSCHHHHHHHHHHHHHTTTTTCEEEECCCC-CTTHHH
T ss_pred ---------------------------cccCCEEEEECccccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCC-cHHHHH
Confidence 3567999999887667899999999999999999999999999998 776666
Q ss_pred HHHHHHHhhhhccccccccccccCcchhhhHHHHHhhhhccCCCHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHH
Q 008734 368 AYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKS 447 (555)
Q Consensus 368 ~~~~l~~~e~~~~l~~~~~~~~g~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~y~~a~~~r~~~~~~ 447 (555)
.++.++..|...++.. .+ ..+.+.+.+.++.++..+.. ++..+|.++++.|..++++
T Consensus 284 ~~~~~~~~e~~~~~~~-----------------~~-~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~a~~~r~~~~~~ 340 (434)
T 2dc0_A 284 VYTRLVRYEAARIHEK-----------------AL-KEHPEGFSPQVREALLAGLA-----LTEKDYRDAVAEREALRLE 340 (434)
T ss_dssp HHHHHHHHHHHHHSHH-----------------HH-HHCGGGSCHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----------------HH-HhchhhcCHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHH
Confidence 7777777777553321 12 12234578888888877643 3557899999999999999
Q ss_pred HHHHhcCCCEEEeCCCCCCccccCcccC----Cccccccc-ccccccccccCCCeEeecCcccCCCCCCCceeEEEEcCC
Q 008734 448 FKTALDENDILISPAAPSAAYKIGEKKN----DPLAMYSG-DIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAA 522 (555)
Q Consensus 448 ~~~~~~~~D~Ll~Pt~p~~a~~~~~~~~----~~~~~~~~-~~~t~~~nl~G~PaisvP~g~~~~~~~GlPvGvQlvg~~ 522 (555)
+.++|+++|+||+|++|.++|++++... .....+.. ..||.+||++|+|+++||+|+ . +|+|+||||+|++
T Consensus 341 ~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~---~GlPvGvqlvg~~ 416 (434)
T 2dc0_A 341 LVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAK-V---EGMPVGLQVVGAY 416 (434)
T ss_dssp HHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHHHTTCCEEEEEEEE-E---TTEEEEEEEECCT
T ss_pred HHHHHhcCCEEEECCCCCCCccCcccccccccchhhhhhhhhhhhhhhhhhCCCeEEEecCC-C---CCCCeEEEEECCC
Confidence 9999999999999999999999986421 00111212 358999999999999999999 5 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHc
Q 008734 523 FDEGKLLKVGHIFEQTL 539 (555)
Q Consensus 523 ~~D~~LL~~A~~lE~~~ 539 (555)
|+|+.||++|++||+.+
T Consensus 417 ~~d~~lL~~A~~lE~~~ 433 (434)
T 2dc0_A 417 GEDGKVLALGGWLEARL 433 (434)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHhh
Confidence 99999999999999875
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=1.7e-102 Score=836.73 Aligned_cols=454 Identities=27% Similarity=0.366 Sum_probs=397.0
Q ss_pred CCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEec-CHHHHHHHHhhhHHHHcCCCCCCccccEEEEecC
Q 008734 46 SPPESQILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDN 124 (555)
Q Consensus 46 ~~~~~s~~~l~~~~~~g~~t~~el~~~~l~ri~~~~~~~na~~~~-~~~al~~A~~~d~~~~~g~~~gpL~GiPi~vKD~ 124 (555)
++.. |+.+|+++|++|++|++||+++||+||+++|+.+|||+++ .|+|+++|++ | .||||||||+||||
T Consensus 5 ~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d--------~gpL~GvPi~vKD~ 74 (493)
T 3a2q_A 5 DLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A--------SGPFAGVPYLLKDL 74 (493)
T ss_dssp CTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C--------CSTTTTCEEEEESS
T ss_pred hhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c--------CCCcCCcEEEEecC
Confidence 5667 9999999999999999999999999999999999999999 8899999998 8 38999999999999
Q ss_pred c-cCCCcccCcccchhc--CCCCCCchHHHHHHHHCCCeEEEecccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchHH
Q 008734 125 I-CTVDMPSTAGSRVLE--NYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGS 201 (555)
Q Consensus 125 ~-~v~G~~tt~Gs~~~~--~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGs 201 (555)
| +|+|++||+||..++ ++++.+|+++|+|||+|||||+||||||||+++..|+|+.||.|+||||+.|+||||||||
T Consensus 75 ~~~v~G~~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGs 154 (493)
T 3a2q_A 75 TVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGS 154 (493)
T ss_dssp SSCCTTSBCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSHHH
T ss_pred CcCcCCCcccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHH
Confidence 9 999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcceeccccCCCcccccccccCcceeccCCCcccCCCC--c-ccCCCCceeccccCCHHHHHHHHHHHcCCCC
Q 008734 202 AAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGL--I-AYASSLDVIGCFGSSVADTGILLSAISGHDR 278 (555)
Q Consensus 202 aaaVaag~~~~alGtDtgGSiR~PAa~~Gv~g~kPT~g~v~~~g~--~-~~s~~~d~~Gpmarsv~Dla~ll~~l~g~d~ 278 (555)
|++||+|++++|+|||||||||+||+||||||||||+|+||+.|+ . +++.++|++|||||||+|+++++++|+|+|+
T Consensus 155 AAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g~d~ 234 (493)
T 3a2q_A 155 GAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRP 234 (493)
T ss_dssp HHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBSCCT
T ss_pred HHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999998 5 8888999999999999999999999999999
Q ss_pred CCcchhhhHHhhhhcccCCCCchhHHHHHhhhhcCCCCCCcEEEEecccc--cCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 008734 279 LDATSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETL--ENGVDSGVKSTVLGAVSHLEELGCTLSE 356 (555)
Q Consensus 279 ~D~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lRIGv~~~~~--~~~~~p~v~~a~~~a~~~L~~~G~~Vve 356 (555)
.|+.+.+. +..+|...+ ..+.+++||||+.+++ ...++++++++++++++.|+++||+|++
T Consensus 235 ~d~~~~~~----------p~~~~~~~~-------~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~ 297 (493)
T 3a2q_A 235 GDTFCAPT----------ASRPYAQGI-------SENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVND 297 (493)
T ss_dssp TCSCCCCC----------CSSCHHHHT-------TSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCcccccC----------CCcchhhhc-------ccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99776533 334565544 4467899999998876 4679999999999999999999999999
Q ss_pred ecCCCcc--chhhHHHHHHHhhhhccccccccccccCcchhhhHHHHHh-hhhccCCCHHHHHHHHhhhhhhhcCCCHHH
Q 008734 357 VSLPSFS--LGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYG-DSRAKGFGSEVKMRILMGTYALSAGYYDAY 433 (555)
Q Consensus 357 v~lp~~~--~~~~~~~~l~~~e~~~~l~~~~~~~~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~ 433 (555)
+++|.+. +....|+.++..|...++..+ .+.+. ......+.+.++.++..+. .++..+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~ 358 (493)
T 3a2q_A 298 AYPEALGDRSFLKDYSTICDVAIAREIERN--------------GELIGRPLTEDDVEWTSWEMVKRAD-----QVTGRA 358 (493)
T ss_dssp CCCGGGGCCTHHHHHHHHHHHHHHHHHHHH--------------HHHHTSCCCTTTSCHHHHHHHHHHH-----TCCHHH
T ss_pred eCCCccCHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhcCccChhhcCHHHHHHHHhhc-----cCCHHH
Confidence 9987443 445567777777775533221 11121 1123357788888877663 345678
Q ss_pred HHHHHHHHHHHHHHHHHHh-cCCCEEEeCCCCCCccccCcccCC-c----------ccccc-cccccccccccCCCeEee
Q 008734 434 YKRAQQVRTLIQKSFKTAL-DENDILISPAAPSAAYKIGEKKND-P----------LAMYS-GDIMTVNVNLAGLPALVL 500 (555)
Q Consensus 434 y~~a~~~r~~~~~~~~~~~-~~~D~Ll~Pt~p~~a~~~~~~~~~-~----------~~~~~-~~~~t~~~nl~G~Paisv 500 (555)
|.++++.|..+++.+.++| +++|+||+|+++.+||++++...+ + ...+. ...||.+||++|+|+++|
T Consensus 359 ~~~a~~~r~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~Paisv 438 (493)
T 3a2q_A 359 FAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISL 438 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCCceec
Confidence 9999999999999999999 999999999999999999864321 1 11111 135899999999999999
Q ss_pred cCcccCCCCCCCceeEEEEcCCCCHHHHHHHHHHHHHHcCCCCCCCCc
Q 008734 501 PCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTLQGCRFVPPL 548 (555)
Q Consensus 501 P~g~~~~~~~GlPvGvQlvg~~~~D~~LL~~A~~lE~~~~~~~~~P~~ 548 (555)
|+|+.. +|||+||||+|++|+|+.||++|++||+.++|+++.|++
T Consensus 439 P~g~~~---~GlPvGvQlvg~~~~d~~lL~~A~~lE~~~~~~~~~p~~ 483 (493)
T 3a2q_A 439 PIGMSS---DGMPIGVQIVAAYGREDLLLQVAAQLEGALPWVARRPQL 483 (493)
T ss_dssp EEEECT---TSCEEEEEEEESTTCHHHHHHHHHHHHHHSCCTTCCCGG
T ss_pred cCCcCC---CCCCeEEEEecCCCChHHHHHHHHHHHHhcCcccCCCCC
Confidence 999987 899999999999999999999999999999987777776
No 7
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=2.4e-102 Score=836.74 Aligned_cols=465 Identities=32% Similarity=0.480 Sum_probs=399.2
Q ss_pred CCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCccEEEec-CHHHHHHHHhhhHHHHcCCCCCCccccEEE
Q 008734 45 TSPPESQILSIRHSLLSREVTATQLAETYLSRLKLAE---PQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVG 120 (555)
Q Consensus 45 ~~~~~~s~~~l~~~~~~g~~t~~el~~~~l~ri~~~~---~~~na~~~~-~~~al~~A~~~d~~~~~g~~~gpL~GiPi~ 120 (555)
+++..+|+.+|+++|++|++|++||+++||+||+++| +.+|||+++ .+ |+++|+++|+++++|+.+||||||||+
T Consensus 6 ~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvPi~ 84 (503)
T 1m22_A 6 FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLL 84 (503)
T ss_dssp CTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEE
T ss_pred CCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCceeE
Confidence 4677889999999999999999999999999999999 999999999 66 999999999999999999999999999
Q ss_pred EecCccCCCcccCcccchhcCCCCCCchHHHHHHHHCCCeEEEecccccccC-----CCCCCCCCCCCCCCCCCCCCCCC
Q 008734 121 VKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGM-----GSTTESSSFQVTANPWDISRVPG 195 (555)
Q Consensus 121 vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~-----~~~~~n~~~G~t~NP~~~~~~~G 195 (555)
|||||+|+|++||+||..++++++ +|+++|+|||+|||||+||||||||++ +..|+|++||+|+||||+.|+||
T Consensus 85 vKD~~~v~G~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~pG 163 (503)
T 1m22_A 85 LKDNINAAPMATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPC 163 (503)
T ss_dssp EETTBCCTTSCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCCC
T ss_pred eecccccCCCCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999 999999999999999999999999998 78899999999999999999999
Q ss_pred CCchHHHHHHHhcCcceeccccCCCcccccccccCcceeccCCCcccCCCCcccCCCCceeccccCCHHHHHHHHHHHcC
Q 008734 196 GSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISG 275 (555)
Q Consensus 196 GSSgGsaaaVaag~~~~alGtDtgGSiR~PAa~~Gv~g~kPT~g~v~~~g~~~~s~~~d~~Gpmarsv~Dla~ll~~l~g 275 (555)
|||||||+|||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|+|
T Consensus 164 GSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~vl~g 243 (503)
T 1m22_A 164 GSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAG 243 (503)
T ss_dssp SSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhhHHhhhhcccCC---CCchhHHHHHhhhhcCCCCCCcEEEEecccccCCCChHHHHHHHHHHHHHHHcCC
Q 008734 276 HDRLDATSSKQVRVLQISVSQE---VPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGC 352 (555)
Q Consensus 276 ~d~~D~~s~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~l~~lRIGv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~ 352 (555)
+|+.|+.+.+. + .++|...+ ...+++++||||+.+++ .++++++++++++++.|+++|+
T Consensus 244 ~d~~d~~~~~~----------~~~~~~~~~~~~------~~~~~~~lrIgv~~~~~--~~~~~v~~a~~~a~~~L~~~G~ 305 (503)
T 1m22_A 244 RDDADPATATM----------PGRAVYDYTARL------DPQGLRGKRIGLLQTPL--LKYRGMPPLIEQAATELRRAGA 305 (503)
T ss_dssp CCTTCGGGGGC----------TTCCCCCGGGGC------CTTTTTTCEEEEECSGG--GGSTTHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccccc----------ccccccchhhhc------cccCCCCCEEEEECccc--cCCHHHHHHHHHHHHHHHHcCC
Confidence 99999876533 2 23454433 12357899999998775 3899999999999999999999
Q ss_pred EEEEecCCCccchhhHHHHHHHhhhhccccccccccccCcchhhhHHHHHhhh------hccCCCHHHHHHHHhhhhhhh
Q 008734 353 TLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDS------RAKGFGSEVKMRILMGTYALS 426 (555)
Q Consensus 353 ~Vvev~lp~~~~~~~~~~~l~~~e~~~~l~~~~~~~~g~~~~~~~l~~l~~~~------~~~~~~~~~~~~i~~g~~~~~ 426 (555)
+|+++++|.+.+....++.++..|+..++.+|+.... .. ...+.+++... ....+++++..++..+.
T Consensus 306 ~v~~~~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 378 (503)
T 1m22_A 306 VVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHR-AP--LRSLADLIAFNQAHSKQELGLFGQELLVEADATA---- 378 (503)
T ss_dssp EEEEECCTTTTTTHHHHHHHHHHHHHHHHHHHHHHTT-CS--CCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCC----
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cc--cccHHHHHHHhhhcchhcccccCHHHHHHHHhcC----
Confidence 9999999876655556677778888877777765421 00 12233333211 12357788888776652
Q ss_pred cCCCHHHHHHHHHHHHHHHHH--HHHHhcC--CCEEEeCCCCCCccccCcccCCcccccccccccccccccCCCeEeecC
Q 008734 427 AGYYDAYYKRAQQVRTLIQKS--FKTALDE--NDILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPC 502 (555)
Q Consensus 427 ~~~~~~~y~~a~~~r~~~~~~--~~~~~~~--~D~Ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~ 502 (555)
.++..+|.++++.|..++++ +.++|++ +|+||+|++ .++++++.. .+.. . ..||.+||++|+|+++||+
T Consensus 379 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~-~~~~---~-~~~t~~~nl~G~PaisvP~ 451 (503)
T 1m22_A 379 -GLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSE-GDDF---P-GESYSAAAVAGYPSLTVPM 451 (503)
T ss_dssp -CTTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC----CC---T-TCCHHHHHHHTCCEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCcccccc-cCcc---c-ccccccchhhCCCeEEecc
Confidence 34457788888888887765 9999974 999999999 567777532 1211 1 4589999999999999999
Q ss_pred cccCCCCCCCceeEEEEcCCCCHHHHHHHHHHHHHHcCCCCCCCCc
Q 008734 503 GFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTLQGCRFVPPL 548 (555)
Q Consensus 503 g~~~~~~~GlPvGvQlvg~~~~D~~LL~~A~~lE~~~~~~~~~P~~ 548 (555)
|+. +|||+||||+|++|+|++||++|++||++++|+ ++|.+
T Consensus 452 g~~----~GlPvGvqlvg~~~~d~~lL~~A~~~E~~~~~~-~~p~~ 492 (503)
T 1m22_A 452 GQI----DGLPVGLLFMGTAWSEPKLIEMAYAYEQRTRAR-RPPHF 492 (503)
T ss_dssp EEE----TTEEEEEEEECSTTCHHHHHHHHHHHHHHHCCC-CCCCC
T ss_pred ccC----CCCCeEEEEECCCCChHHHHHHHHHHHHhhCCC-CCCCC
Confidence 987 599999999999999999999999999999873 44444
No 8
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=2.4e-100 Score=821.24 Aligned_cols=480 Identities=28% Similarity=0.437 Sum_probs=399.7
Q ss_pred cCCHHHHHHHHHcCCCCH-HHHHHHHHHHHHHhCCCccEEE-ec-CHHHHHHHHhhhHH---------HHcCCCCCCccc
Q 008734 49 ESQILSIRHSLLSREVTA-TQLAETYLSRLKLAEPQLKSFI-HV-SNNVLKEAQSIDDK---------IKRNENVGPLAG 116 (555)
Q Consensus 49 ~~s~~~l~~~~~~g~~t~-~el~~~~l~ri~~~~~~~na~~-~~-~~~al~~A~~~d~~---------~~~g~~~gpL~G 116 (555)
.+++.++...|.+++++. +|+++.++++++++++.+|+++ ++ .+++ .++.+.|+. ..+|+..|||||
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~~~gpL~G 90 (521)
T 3a1k_A 12 DAAARHYGITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPTSDGVLTG 90 (521)
T ss_dssp HHHHHHTTCCCCTTHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCSSCCTTTT
T ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhcCCCCCCCCC
Confidence 457888888999999999 9999999999999988887776 66 6666 667777651 224777899999
Q ss_pred cEEEEecCccCCCcccCcccchhcCCCCCCchHHHHHHHHCCCeEEEecccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008734 117 VLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGG 196 (555)
Q Consensus 117 iPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GG 196 (555)
|||+|||||+|+|++||+||..++++++.+||++|+|||+||||++|||||+||+++..++|+.||+|+||||+.|+|||
T Consensus 91 vPi~vKD~i~v~G~~Tt~Gs~~~~~~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGG 170 (521)
T 3a1k_A 91 RRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGG 170 (521)
T ss_dssp CEEEEETTBCCTTSCBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETTEEEEECCS
T ss_pred CEEEEEcCcccCCcccCCCChhhcCCCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHhcCcceeccccCCCcccccccccCcceeccCCCcccCCCCcccCCCCceeccccCCHHHHHHHHHHHcCC
Q 008734 197 SSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGH 276 (555)
Q Consensus 197 SSgGsaaaVaag~~~~alGtDtgGSiR~PAa~~Gv~g~kPT~g~v~~~g~~~~s~~~d~~Gpmarsv~Dla~ll~~l~g~ 276 (555)
||||||+|||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|+|+
T Consensus 171 SSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vlag~ 250 (521)
T 3a1k_A 171 SSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGR 250 (521)
T ss_dssp SSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHHHHHHCSC
T ss_pred CCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhHHhhhhcccCCCCchhHHHHHhhhhcCCCCCCcEEEEeccccc-CCCChHHHHHHHHHHHHHHHcCCEEE
Q 008734 277 DRLDATSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLE-NGVDSGVKSTVLGAVSHLEELGCTLS 355 (555)
Q Consensus 277 d~~D~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lRIGv~~~~~~-~~~~p~v~~a~~~a~~~L~~~G~~Vv 355 (555)
|+.|+.+... .+.++|...+ ..+++++||||+.+.+. ..++++++++++++++.|+++|++|+
T Consensus 251 d~~D~~~~~~---------~~~~~~~~~l-------~~~~~~lrIgv~~~~~~~~~~~~~v~~a~~~a~~~L~~~Ga~v~ 314 (521)
T 3a1k_A 251 DGNDPRQADS---------VEAGDYLSTL-------DSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVE 314 (521)
T ss_dssp CSSCTTSCTT---------CCCCCSSTTT-------TSCCTTCEEEEEGGGSCCSSSCHHHHHHHHHHHHGGGGGTCEEE
T ss_pred CCCCcccccc---------CCCcchhhhh-------ccCccCcEEEEECccccccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 9988765211 0344565544 45678999999987653 46899999999999999999999999
Q ss_pred EecCCCccchhhHHHHHHHhhhhccccccccccccCcch-hhhHHH---HHhhhhccCCCHHHHHHHHhhhhhhhcCCCH
Q 008734 356 EVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAA-AEDLNA---LYGDSRAKGFGSEVKMRILMGTYALSAGYYD 431 (555)
Q Consensus 356 ev~lp~~~~~~~~~~~l~~~e~~~~l~~~~~~~~g~~~~-~~~l~~---l~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~ 431 (555)
++++|...+....++.+...+...++.++++..+..... ..++.+ .+...+.+.+.++++.++..|.+. ...++.
T Consensus 315 ev~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~-~~~~~~ 393 (521)
T 3a1k_A 315 EVNIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHG-ITTLGG 393 (521)
T ss_dssp EECCTHHHHHHHHHHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHH-HTTTTT
T ss_pred EeCCCchHhHHHHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhhhhhhcCHHHHHHHHhchhh-hccCCH
Confidence 999987665556666666666666776666532211110 112222 222334566899999999888653 344666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCccccCcccCCccc----ccccccccccccccCCCeEeecCcccCC
Q 008734 432 AYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLA----MYSGDIMTVNVNLAGLPALVLPCGFVEG 507 (555)
Q Consensus 432 ~~y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~a~~~~~~~~~~~~----~~~~~~~t~~~nl~G~PaisvP~g~~~~ 507 (555)
.+|.++++.|..+++.|+++|+++|+||+||+|.+||++++...+... .+....||.+||++|+|+++||+|+.
T Consensus 394 ~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-- 471 (521)
T 3a1k_A 394 ASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLV-- 471 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeecccC--
Confidence 789999999999999999999999999999999999999874222110 11123579999999999999999994
Q ss_pred CCCCCceeEEEEcCCCCHHHHHHHHHHHHH-HcCCCCCCCCcccC
Q 008734 508 GPIGLPVGLQMIGAAFDEGKLLKVGHIFEQ-TLQGCRFVPPLIAD 551 (555)
Q Consensus 508 ~~~GlPvGvQlvg~~~~D~~LL~~A~~lE~-~~~~~~~~P~~~~~ 551 (555)
+|||+||||||++|+|++||++|++||+ ..+|++ ++...++
T Consensus 472 --~GlPvGlQlvg~~~~d~~LL~~A~~~E~~~~~~~~-~~~~~~~ 513 (521)
T 3a1k_A 472 --NGLPVGMMITGRHFDDATVLRVGRAFEKLRGAFPT-PAERASN 513 (521)
T ss_dssp --TTEEEEEEEECSTTCHHHHHHHHHHHHHHHCCCCC-TTC----
T ss_pred --CCCCeeEEEEcCCCCHHHHHHHHHHHHHhhcccCC-ccccccC
Confidence 6999999999999999999999999999 666543 3333333
No 9
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=8.1e-97 Score=773.94 Aligned_cols=409 Identities=24% Similarity=0.428 Sum_probs=360.1
Q ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEec-CHHHHHHHHhhhHHHHcCCCCCCccccEEEEecCccCC
Q 008734 50 SQILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTV 128 (555)
Q Consensus 50 ~s~~~l~~~~~~g~~t~~el~~~~l~ri~~~~~~~na~~~~-~~~al~~A~~~d~~~~~g~~~gpL~GiPi~vKD~~~v~ 128 (555)
+|+.+|+++|++|++|++||+++||+||+++|+.+|||+++ .++| + +..||||||||+|||+|+|+
T Consensus 2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~------------~~~gpL~GvPi~vKD~~~v~ 68 (414)
T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A------------QASGPLRGIAVGIKDIIDTA 68 (414)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C------------CSSSTTTTCEEEEETTBCCS
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c------------ccCCCcCCCEEEEEcccccC
Confidence 68999999999999999999999999999999999999999 7766 2 34689999999999999999
Q ss_pred CcccCcccchhcCCCCCCchHHHHHHHHCCCeEEEecccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhc
Q 008734 129 DMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSAR 208 (555)
Q Consensus 129 G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVaag 208 (555)
|++||+||..+.++++.+|+++|+|||+||||++||||||||++ .|+ |.|+||||+.|+|||||||||++||+|
T Consensus 69 G~~tt~Gs~~~~~~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaaVAag 142 (414)
T 1o9p_A 69 NMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAAVGAG 142 (414)
T ss_dssp SSCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHHHHTT
T ss_pred CcccCcCCHhhccCCCCCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999998 455 999999999999999999999999999
Q ss_pred CcceeccccCCCcccccccccCcceeccCCCcccCCCCcccCCCCceeccccCCHHHHHHHHHHHcCCCCCCcchhhhHH
Q 008734 209 QCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVR 288 (555)
Q Consensus 209 ~~~~alGtDtgGSiR~PAa~~Gv~g~kPT~g~v~~~g~~~~s~~~d~~Gpmarsv~Dla~ll~~l~g~d~~D~~s~~~~~ 288 (555)
++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|.|.+ +..
T Consensus 143 ~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~--~~~------ 214 (414)
T 1o9p_A 143 MIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS--EFS------ 214 (414)
T ss_dssp SCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCG--GGS------
T ss_pred CCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCC--ccc------
Confidence 999999999999999999999999999999999999999999999999999999999999999999975 110
Q ss_pred hhhhcccCCCCchhHHHHHhhhhcCCCCCCcEEEEecccccCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCc-cchhh
Q 008734 289 VLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSF-SLGLP 367 (555)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lRIGv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~Vvev~lp~~-~~~~~ 367 (555)
+ ..+.+++||||+.++++..++++++++++++++.|+++|++|+++++|.. .....
T Consensus 215 --------~---------------~~~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~~~~~~~~~~ 271 (414)
T 1o9p_A 215 --------G---------------IVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWR 271 (414)
T ss_dssp --------S---------------CCCCSSCEEEECCCGGGCCCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHH
T ss_pred --------c---------------ccCCCCCEEEEECccccCCCCHHHHHHHHHHHHHHHHCCCEEEEecCcchHHHHHH
Confidence 0 22467899999998877789999999999999999999999999998753 33334
Q ss_pred HHHHHHHhhhhccccccccccccCcchhhhHHHHHhhhhccCCCHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHH
Q 008734 368 AYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKS 447 (555)
Q Consensus 368 ~~~~l~~~e~~~~l~~~~~~~~g~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~y~~a~~~r~~~~~~ 447 (555)
.+..++..|...++.. .+.. ..+.+.+.++.++..+. .++..+|.++++.|..++++
T Consensus 272 ~~~~~~~~e~~~~~~~-----------------~~~~-~~~~~~~~~~~~~~~g~-----~~~~~~~~~a~~~r~~~~~~ 328 (414)
T 1o9p_A 272 IHPIIQDFEAHRALAW-----------------EFSE-HHDEIAPMLRASLDATV-----GLTPKEYDEARRIGRRGRRE 328 (414)
T ss_dssp HHHHHHHHHHHHHTHH-----------------HHHH-SGGGSCHHHHHHHHHTT-----TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHh-ChhhcCHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHH
Confidence 4556666776543322 1211 22347888888887663 44668899999999999999
Q ss_pred HHHHhcCCCEEEeCCCCCCccccCcccCCcccccccccccccccccCCCeEeecCcccCCCCCCCceeEEEEcCCCCHHH
Q 008734 448 FKTALDENDILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGK 527 (555)
Q Consensus 448 ~~~~~~~~D~Ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~~~~GlPvGvQlvg~~~~D~~ 527 (555)
+.++|+++|+||+|++|.++|+++..... ...||.+||++|+|+++||+|+.. |+|+||||+|++|+|+.
T Consensus 329 ~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~------~~~~t~~~nl~G~PaisvP~g~~~----GlPvGvqlvg~~~~d~~ 398 (414)
T 1o9p_A 329 LGEVFEGVDVLLTYSAPGTAPAKALASTG------DPRYNRLWTLMGNPCVNVPVLKVG----GLPIGVQVIARFGNDAH 398 (414)
T ss_dssp HHHHTTTCSEEEEESSSSSCCBGGGCCCC------CGGGTHHHHHHCCCEEEEEEEEET----TEEEEEEEEESTTCHHH
T ss_pred HHHHHcCCCEEEeCCCCCCCCcccccCCc------ccchhhhhHhcCCCeEEeeCCCCC----CCCeEEEEECCCCChHH
Confidence 99999999999999999999998753111 125899999999999999999874 99999999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 008734 528 LLKVGHIFEQTLQG 541 (555)
Q Consensus 528 LL~~A~~lE~~~~~ 541 (555)
||++|++||+.+++
T Consensus 399 lL~~a~~le~~~~g 412 (414)
T 1o9p_A 399 ALATAWFLEDALAK 412 (414)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998764
No 10
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=8.2e-97 Score=796.47 Aligned_cols=461 Identities=21% Similarity=0.263 Sum_probs=374.9
Q ss_pred CCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEecCHHHHHHHHhhhHHHHcCCCCCCccccEEEEecC
Q 008734 45 TSPPESQILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDN 124 (555)
Q Consensus 45 ~~~~~~s~~~l~~~~~~g~~t~~el~~~~l~ri~~~~~~~na~~~~~~~al~~A~~~d~~~~~g~~~gpL~GiPi~vKD~ 124 (555)
.++..+|+.+|+++|++|++|++||+++|++||+++|+.+||++++.++++++|+++|+ .||||||||+||||
T Consensus 66 ~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a~~~a~~~~~-------~gpL~GvPi~vKD~ 138 (573)
T 3ppm_A 66 EALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPR-------QGLLYGVPVSLKEC 138 (573)
T ss_dssp HHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTHHHHHHHCCT-------TCTTTTCEEEEETT
T ss_pred hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHHHHHHHhhhh-------cCCcCCCeEEEEcc
Confidence 45778999999999999999999999999999999999999999994446777777653 28999999999999
Q ss_pred ccCCCcccCcccchhcCCCCCCchHHHHHHHHCCCeEEEecccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 008734 125 ICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAA 204 (555)
Q Consensus 125 ~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaa 204 (555)
|+++|++||+||..+.++++.+|+++|++|++||||++||||||||+++..+.|+.||+|+||||+.++||||||||||+
T Consensus 139 ~~~~G~~tt~Gs~~~~~~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaa 218 (573)
T 3ppm_A 139 FSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGAL 218 (573)
T ss_dssp BCCBTCCCCTTCGGGTTCCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHHHHHH
T ss_pred cCCCCCCcCCcChhhcCCCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcceeccccCCCcccccccccCcceeccCCCcccCCCCcccCCC----CceeccccCCHHHHHHHHHHHcCCCCC-
Q 008734 205 VSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASS----LDVIGCFGSSVADTGILLSAISGHDRL- 279 (555)
Q Consensus 205 Vaag~~~~alGtDtgGSiR~PAa~~Gv~g~kPT~g~v~~~g~~~~s~~----~d~~Gpmarsv~Dla~ll~~l~g~d~~- 279 (555)
||+|++++|+|||||||||+||+||||||||||+||||+.|+++.+++ +|++|||||||+|+++++++|+|.|++
T Consensus 219 VAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~~~ 298 (573)
T 3ppm_A 219 IGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFT 298 (573)
T ss_dssp HHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSHHHHH
T ss_pred HHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999998765 899999999999999999999997743
Q ss_pred -CcchhhhHHhhhhcccCCCCchhHHHHHhhhhcCCCCCCcEEEEecccccCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 008734 280 -DATSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVS 358 (555)
Q Consensus 280 -D~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lRIGv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~Vvev~ 358 (555)
|+... +.+ |...+ ..+.+++||||+.+++...++|+++++++++++.|+++||+|++++
T Consensus 299 ~d~~~~------------~~~-~~~~~-------~~~~~~lrigv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~~~ 358 (573)
T 3ppm_A 299 LDPTVP------------PLP-FREEV-------YRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFL 358 (573)
T ss_dssp HCTTSC------------CCC-CCHHH-------HTCCCCCEEEECSCCSSSCCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred cCCCCC------------ccc-cchhh-------cccCCCCEEEEEcccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 44322 223 33333 3467899999998877678899999999999999999999999999
Q ss_pred CCCccchhhHHH-HHHHhhhhccc-cccccccccC--cch------hhhHHHHHhhhhccCCCHHHHHHHHhhhhhhhcC
Q 008734 359 LPSFSLGLPAYY-ILASSESSSNL-SRYDGVRYGN--QAA------AEDLNALYGDSRAKGFGSEVKMRILMGTYALSAG 428 (555)
Q Consensus 359 lp~~~~~~~~~~-~l~~~e~~~~l-~~~~~~~~g~--~~~------~~~l~~l~~~~~~~~~~~~~~~~i~~g~~~~~~~ 428 (555)
+|.+.+....++ ..+..|....+ ..+.+..... +.. ...+..++.... ..+.+.+...+..+ ..
T Consensus 359 ~p~~~~~~~~~~~~~~~~dg~~~~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~-~~~~p~~~~~~~~~-----~~ 432 (573)
T 3ppm_A 359 PNNIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLL-KPLFPRLAAFLNNM-----RP 432 (573)
T ss_dssp CTTHHHHHHTHHHHHHTTBTTHHHHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHH-TTTCHHHHHHHHHT-----SB
T ss_pred CccHHHHHHHHHHHHHhhhhHHHHHHHhccCcccHHHHHHhhhccchHHHHHHHHHHh-hhcchHHHHHHhhc-----cc
Confidence 998766544333 34434432221 1111111000 000 011222221111 12334333222211 23
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEeCCCCCCccccCcccCCcccccccccccccccccCCCeEeecCcccC
Q 008734 429 YYDAYYKRAQQVRTLIQKSFKTALD--ENDILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVE 506 (555)
Q Consensus 429 ~~~~~y~~a~~~r~~~~~~~~~~~~--~~D~Ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~ 506 (555)
.+..+|++++..|+.++++|.+.|+ ++|+||+|+ +.+|++|+... ..+....||.+||++|||+++||+|++.
T Consensus 433 ~s~~e~~~~~~~r~~~r~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~----~~~~~~~YT~l~NLLDyPA~vVPvg~v~ 507 (573)
T 3ppm_A 433 RSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPM-LGPALDLNTPG----RATGAVSYTMLYNCLDFPAGVVPVTTVT 507 (573)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEC-CCSCCBTTCGG----GCGGGGHHHHHHHHTTCCEEEEEEEECC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhcCCCEeeCCC-CCCCcCCcccc----ccccccchhhhhHhhCCCeEEEeccccc
Confidence 4567889999999999999999996 599999999 56889887521 1223346999999999999999999762
Q ss_pred --------------------------CCCCCCceeEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Q 008734 507 --------------------------GGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTLQGCR 543 (555)
Q Consensus 507 --------------------------~~~~GlPvGvQlvg~~~~D~~LL~~A~~lE~~~~~~~ 543 (555)
+..+|+|+||||||++|+|++||++|+.+|++++.++
T Consensus 508 ~~~d~~~~~~~~~~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~~ 570 (573)
T 3ppm_A 508 AEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQK 570 (573)
T ss_dssp HHHHHHHTTCCCSSCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTTS
T ss_pred ccccccccccccccchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhccc
Confidence 1247999999999999999999999999999999864
No 11
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=55.14 E-value=15 Score=26.08 Aligned_cols=28 Identities=11% Similarity=0.313 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 008734 52 ILSIRHSLLSREVTATQLAETYLSRLKL 79 (555)
Q Consensus 52 ~~~l~~~~~~g~~t~~el~~~~l~ri~~ 79 (555)
+.++.+..-.|++|..++++.|.+||++
T Consensus 32 ~l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 32 VVAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 4567888999999999999999999975
No 12
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=49.70 E-value=16 Score=27.32 Aligned_cols=49 Identities=10% Similarity=0.169 Sum_probs=33.6
Q ss_pred cCCCCCCCCCCCCCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q 008734 32 SSSQPVTDQSPSSTSPPESQILSIRHSLLSREVTATQLAETYLSRLKLA 80 (555)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~g~~t~~el~~~~l~ri~~~ 80 (555)
+++.++........++..+++.||.+.++.+.+...-.-...++|++++
T Consensus 11 ~~~~~~~~~g~l~~~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~ 59 (75)
T 2kvu_A 11 MSTPLTGKPGALPANLDDMKVAELKQELKLRSLPVSGTKTELIERLRAY 59 (75)
T ss_dssp CCSCSCSSCSSCCTTTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHH
T ss_pred cccCCCCCCccchHHHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 3444443334455578899999999999999998744444556666654
No 13
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=22.62 E-value=1.2e+02 Score=23.00 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=25.2
Q ss_pred CcCCHHHHHHHHHcCC--CCHHHHHHHHHHHHHHhCC
Q 008734 48 PESQILSIRHSLLSRE--VTATQLAETYLSRLKLAEP 82 (555)
Q Consensus 48 ~~~s~~~l~~~~~~g~--~t~~el~~~~l~ri~~~~~ 82 (555)
..++..||...++++. +++.|.++.+.+-+++++|
T Consensus 31 kPmTT~dLl~KFK~r~~~~~~~e~v~~~a~ILKki~p 67 (82)
T 1nha_A 31 KPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNP 67 (82)
T ss_dssp SCBCHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHCC
T ss_pred CCccHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCH
Confidence 4567788888887764 6788888777666666665
No 14
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae}
Probab=22.49 E-value=3.4e+02 Score=25.03 Aligned_cols=22 Identities=5% Similarity=-0.025 Sum_probs=17.8
Q ss_pred HHHHHHHHCCCeEEEecccccc
Q 008734 149 TAVKKVKEFDGIVVGKTNLDEF 170 (555)
Q Consensus 149 ~~V~~L~~aGAi~~gkt~~~e~ 170 (555)
.+++.|+++||.++|-..+=+-
T Consensus 160 ~a~~~l~~~Ga~vv~v~vlvdr 181 (238)
T 3n2l_A 160 ESMELIQANKADLAGVLVAIDR 181 (238)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEEEEEEc
Confidence 5789999999999998766443
Done!