RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 008734
(555 letters)
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 726 bits (1878), Expect = 0.0
Identities = 261/480 (54%), Positives = 345/480 (71%), Gaps = 23/480 (4%)
Query: 59 LLSREVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGV 117
L ++E++A +L + YL R++ +P+L +FI V+ L +A++ D K+ E GPLAG+
Sbjct: 1 LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGEA-GPLAGI 59
Query: 118 LVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTE 177
+ +KDNICT + +T S++LENY PP+DAT V+K+K +++GKTN+DEF MGS+TE
Sbjct: 60 PIAIKDNICTKGIRTTCASKILENYVPPYDATVVEKLKAAGAVILGKTNMDEFAMGSSTE 119
Query: 178 SSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPT 237
+S+F T NPWD+ RVPGGSSGGSAAAV+A +LGSDTGGS+RQPA+FCGVVGLKPT
Sbjct: 120 NSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLKPT 179
Query: 238 YGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQISVSQE 297
YGRVSRYGLIA+ASSLD IG F +V D +LL+AI+GHD D+TS+
Sbjct: 180 YGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKDSTSAD----------VP 229
Query: 298 VPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEV 357
VPD+T+ L K +KGLK+GV +E G+D VK V A+ LE+LG + EV
Sbjct: 230 VPDYTAAL-------GKDIKGLKIGVPKEYFGEGLDPEVKEAVEAAIKKLEDLGAEIVEV 282
Query: 358 SLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAA-AEDLNALYGDSRAKGFGSEVKM 416
SLP LPAYYI+A +E+SSNL+RYDGVRYG +A A+DL +Y +R++GFG EVK
Sbjct: 283 SLPHTKYALPAYYIIAPAEASSNLARYDGVRYGYRAEDAKDLEEMYEKTRSEGFGEEVKR 342
Query: 417 RILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKND 476
RI++GTY LSAGYYDAYY +AQ+VRTLI++ F+ A ++ D+++ P AP+ A+KIGEK +D
Sbjct: 343 RIMLGTYVLSAGYYDAYYLKAQKVRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDD 402
Query: 477 PLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFE 536
PLAMY DI TV NLAGLPA+ +P GF +G GLPVGLQ+IG FDE LL V + FE
Sbjct: 403 PLAMYLSDIFTVPANLAGLPAISVPAGFDDG---GLPVGLQLIGKYFDEETLLNVAYAFE 459
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 575 bits (1485), Expect = 0.0
Identities = 245/485 (50%), Positives = 325/485 (67%), Gaps = 28/485 (5%)
Query: 55 IRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGP 113
+R L +E++ ++ E L R++ + ++ +F+ V+ LK+A+ +D I P
Sbjct: 1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAIL-----TP 55
Query: 114 LAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMG 173
LAG+ + VKDNI T + +T S++LENY PP+DAT ++++K+ +++GKTN+DEF MG
Sbjct: 56 LAGIPIAVKDNISTKGIVTTCASKILENYIPPYDATVIERLKQAGALIIGKTNMDEFAMG 115
Query: 174 STTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVG 233
S+TE+S+F T NPW++ RVPGGSSGGSAAAV+A SLGSDTGGS+RQPASFCGVVG
Sbjct: 116 SSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGVVG 175
Query: 234 LKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQIS 293
KPTYGRVSRYGL+AYASSLD IG F +V D +LL ISGHD+ D+T S
Sbjct: 176 FKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDST----------S 225
Query: 294 VSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCT 353
P+F +L K LKGLKVGV++E E +D V+ A+ LEELG
Sbjct: 226 AKVPDPEFFEEL-------KKDLKGLKVGVVKEFSEE-MDKEVQEKFENALEVLEELGAE 277
Query: 354 LSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQA-AAEDLNALYGDSRAKGFGS 412
+ EVS P LP YYI++ SE+SSNL+RYDG+RYG + L LY +RA+GFG
Sbjct: 278 IVEVSFPHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKTRAEGFGE 337
Query: 413 EVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGE 472
EVK RI++G YALSAGYYD YY +AQ+VRTLI F +E D+++SP AP+ +KIGE
Sbjct: 338 EVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGE 397
Query: 473 KKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVG 532
K +DPL MY DI+TV NLAGLPA+ +PCG GLP+GLQ+IG FD+ LL+V
Sbjct: 398 KLDDPLEMYLSDILTVPANLAGLPAISVPCGVK---EKGLPIGLQIIGKCFDDKTLLQVS 454
Query: 533 HIFEQ 537
+ FEQ
Sbjct: 455 YAFEQ 459
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 527 bits (1360), Expect = 0.0
Identities = 239/513 (46%), Positives = 319/513 (62%), Gaps = 47/513 (9%)
Query: 44 STSPPESQILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVS---NNVLKEAQS 100
+ E + L ++E++A +L E YL+R++ P L +F+ V L EA +
Sbjct: 1 MMALTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAA 60
Query: 101 IDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGI 160
D ++ E +GPLAGV + VKDNI T +P+TAGS+ LE+Y PP+DAT V++++ +
Sbjct: 61 ADARLAAGEPLGPLAGVPIAVKDNIDTAGLPTTAGSKALEDYVPPYDATVVERLRAAGAV 120
Query: 161 VVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGG 220
++GKTN+DEF MGS+TE+S+F T NPW++ RVPGGSSGGSAAAV+A ++LGSDTGG
Sbjct: 121 ILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGG 180
Query: 221 SVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLD 280
S+R PA+FCG+VGLKPTYGRVSRYG++ ASSLD IG +V D +LL I+G D D
Sbjct: 181 SIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRD 240
Query: 281 ATSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENG-VDSGVKST 339
+ VP L K LKGL++GV +E G +D V++
Sbjct: 241 SPLPPP---------PPVPP---------ALAGKDLKGLRIGVPKELGGGGPLDPDVRAA 282
Query: 340 VLGAVSHLEELGCTLSEVSLPSFS--LGLPAYYILASSESSSNLSRYDGVRYGNQAAAED 397
AV LE G + EVSLP S L AYY L+R+DG RYG +AA
Sbjct: 283 FEAAVKALEAAGAEVVEVSLPLLSDDYALAAYY----------LARFDGERYGLRAA--- 329
Query: 398 LNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDI 457
LYG +RA+GFG EVK RI++GTY LSAGYYDAYY+RAQ +TLI+++F +E D+
Sbjct: 330 --DLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQ--KTLIRRAFDKLFEEVDV 385
Query: 458 LISPAAPSAAYKIGEKK---NDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPV 514
L++P P+ A KIGE + +DPL MY D+ TV NLAGLPA+ +P GF GLPV
Sbjct: 386 LLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTA---DGLPV 442
Query: 515 GLQMIGAAFDEGKLLKVGHIFEQTLQGCRFVPP 547
GLQ+IG AFD+ LL++ EQ L R PP
Sbjct: 443 GLQLIGPAFDDATLLRLAAALEQALGWHRRPPP 475
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 460 bits (1187), Expect = e-159
Identities = 217/465 (46%), Positives = 287/465 (61%), Gaps = 39/465 (8%)
Query: 69 LAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICT 127
L E YL R + A P+L +F+ V L +A++ D + R E GPL GV + +KDNI
Sbjct: 2 LVEAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRRARKE-KGPLHGVPISLKDNIDV 60
Query: 128 VDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANP 187
+P+TAGS+ LE Y PP+DAT V++++ +++GKTN+DEF MGSTTE+S+F T NP
Sbjct: 61 KGVPTTAGSKALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGSTTENSAFGPTRNP 120
Query: 188 WDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLI 247
WD+SR PGGSSGGSAAAV+A +++G+DTGGS+R PA+FCG+VGLKPTYGRVSRYG++
Sbjct: 121 WDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVV 180
Query: 248 AYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQISVSQEVPDFTSQLIS 307
Y+SSLD +G +V D +LL I+G+D D TS+ VPDF L
Sbjct: 181 PYSSSLDHVGPLARTVEDAALLLDVIAGYDPADPTSAP----------SPVPDFAEPL-- 228
Query: 308 AALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSFSLGLP 367
K LKGL++GV RE +D V+ V A + LE LG + EV PS LP
Sbjct: 229 -----KKSLKGLRIGVPREDFYFSLDPEVQRAVRKAAAALEALGHEVVEVEPPSLKHALP 283
Query: 368 AYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGTYALSA 427
YYI+A +E+SSNLS D LY R + G EVK RI +G YALSA
Sbjct: 284 LYYIIAPAEASSNLSDLD--------------ELYPRIRDELLGDEVKRRIELGAYALSA 329
Query: 428 GYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAMYSGDIMT 487
GY AYY +AQ+VR L+++ F +E D+L+SP P+ A ++GE + P +Y+ T
Sbjct: 330 GYSGAYYLKAQKVRRLLRREFAGLFEELDVLLSPTTPTPAPRLGEAADSPTVLYNLLDFT 389
Query: 488 VN---VNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLL 529
N NLAGLPA+ LP GF E GLPVGLQ+IG D+ LL
Sbjct: 390 ANTVPANLAGLPAISLPAGFSED---GLPVGLQIIGPPGDDETLL 431
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 266 bits (681), Expect = 3e-83
Identities = 145/452 (32%), Positives = 234/452 (51%), Gaps = 38/452 (8%)
Query: 92 NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAV 151
NN + + D+K ++ GPLA + +KDN T + P+ A S+ LEN++P ++AT V
Sbjct: 20 NNAV--SYVFDEKNNKD---GPLANCVFTIKDNFATSEGPTHASSKSLENFKPSYNATVV 74
Query: 152 KKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCV 211
+K+ V K + DE G+G T S+F + NP D S++ GGSS GSAA + +
Sbjct: 75 QKLINAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFN-KNIS 133
Query: 212 VSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLS 271
++GSDTG SVR PASF G VG KP+YG +SRYGL AYASSLD + F +V D IL
Sbjct: 134 FAIGSDTGDSVRLPASFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNVNDAIILSK 193
Query: 272 AISGHDRLDATSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENG 331
+ G D D TS + + ++ + ++KP KV +
Sbjct: 194 VLFGKDENDLTS------VDVKINN-------------VKKTKP---KKVAYL--DCFKE 229
Query: 332 VDSGVKSTVLGAVSHLEELGCTLSEVSLPS--FSLGLPAYYILASSESSSNLSRYDGVRY 389
++ V ++ L+ + ++ + P Y I++ SE+SSNL+ +G+ +
Sbjct: 230 LEEYVAKKYKKLINILKSENIEVEKIKIDEKLLKAIKPVYKIISYSEASSNLANLNGIAF 289
Query: 390 GNQAAAEDLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFK 449
GN+ + ++R++GFG V+ R+++G+Y L + Y+ +A++VR +I+ ++
Sbjct: 290 GNREKGSSWEEIMINTRSEGFGKMVQKRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYE 349
Query: 450 TALDENDILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGP 509
+ ++ DI+I PA A I E +N Y I+T NL G P+L +P G
Sbjct: 350 SIHNKFDIVIYPAYADIAPDIDENENKSDN-YMDYILT-ISNLVGNPSLSIPLGKYN--- 404
Query: 510 IGLPVGLQMIGAAFDEGKLLKVGHIFEQTLQG 541
LP L + +D+ KLL E+ ++G
Sbjct: 405 -NLPFNLAIDSKIYDDEKLLSYSLYIEELIKG 435
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 258 bits (662), Expect = 4e-80
Identities = 164/513 (31%), Positives = 248/513 (48%), Gaps = 62/513 (12%)
Query: 45 TSPPESQILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDD 103
+ I ++ + E++A +A+ L+R+ A PQL +F V + L EA ID
Sbjct: 2 MNLSSLSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDA 61
Query: 104 KIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPF--DATAVKKVKEFDGIV 161
E +GPLAGV VK+ + + AGS++ + RPP DATAV++++ ++
Sbjct: 62 ARAAGEPLGPLAGVPFAVKNLFDVAGLTTLAGSKINRD-RPPATRDATAVRRLEAAGAVL 120
Query: 162 VGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGS 221
VG N+DE+ G TTE+S + T NP D++R+ GGSSGGSAAAV+A +LGSDT GS
Sbjct: 121 VGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSDTNGS 180
Query: 222 VRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDA 281
+R PAS CG+ GLKPTYGR+SR G + +SLD IG F SVAD ++ + G D D
Sbjct: 181 IRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDP 240
Query: 282 TSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVL 341
+ + T+ L+ +GL++ V+ D
Sbjct: 241 -----------FQADRPAEPTAPLLDR------GAEGLRIAVLGGYFAQWAD----PEAR 279
Query: 342 GAVSHL-EELGCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNA 400
AV + + LG T EV LP + A +I+ +SE L A
Sbjct: 280 AAVDRVAKALGAT-REVELPEAARARAAAFIITASE----------------GGNLHLPA 322
Query: 401 LYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILIS 460
L +R + F + R+L G L A +Y +AQ+ R +++ + D+LI+
Sbjct: 323 L--RTRPQDFDPASRDRLLAGA-MLPAAWYV----QAQRFRRWFRQAVLELFEHVDVLIA 375
Query: 461 PAAPSAAYKIGEKK-----NDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVG 515
PA P +A IG++ + + I+T ++ GLP + +P P GLP+G
Sbjct: 376 PATPCSAPLIGQETMRIDGVELPVRANLGILTQPISFIGLPVVAVPL----RTPGGLPIG 431
Query: 516 LQMIGAAFDEGKLLKVGHIFEQTLQG-CRFVPP 547
+Q+I A + E L+ EQ QG P
Sbjct: 432 VQLIAAPWREDLALRAAAALEQ--QGVAAAPVP 462
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 257 bits (659), Expect = 2e-79
Identities = 135/437 (30%), Positives = 216/437 (49%), Gaps = 32/437 (7%)
Query: 112 GPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFG 171
G LAG V +KDN+ +P GS LE + P FDAT V ++ + +VGK ++
Sbjct: 86 GKLAGKTVALKDNVAVAGVPMMNGSSTLEGFVPSFDATVVTRLLDAGATIVGKATCEDLC 145
Query: 172 MGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGV 231
+ +S NP D GGSS GSAA V+A + +++G D GGS+R P+++CG+
Sbjct: 146 FSGGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAWCGI 205
Query: 232 VGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQ 291
G+KPT+G V G ++D +G ++V D +LL I+G D LD +Q
Sbjct: 206 YGMKPTHGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLD---PRQPA--- 259
Query: 292 ISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLE-NGVDSGVKSTVLGAVSHLEEL 350
V D+T+ L + +KGLK+G++RE + V V A LE+L
Sbjct: 260 ---QPPVDDYTAAL-------DRGVKGLKIGILREGFGLPNSEPEVDEAVRAAAKRLEDL 309
Query: 351 GCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAE-DLNALYGD---SR 406
G T+ EVS+P L L + +A+ +++ + +G + + + L +G R
Sbjct: 310 GATVEEVSIPLHRLALAIWNPIATEGATAQMMLGNGYGFNWKGLYDTGLLDAFGAGWRER 369
Query: 407 AKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSA 466
A VK+ +L+G Y L Y+ YY +A+ + ++ ++ AL + D+L+ P P
Sbjct: 370 ADDLSETVKLVMLLGQYGLER-YHGRYYAKARNLARRLRAAYDEALRKYDLLVMPTTPMV 428
Query: 467 AYKIGEKKNDPLAMYSGDI--MTVNV---NLAGLPALVLPCGFVEGGPIGLPVGLQMIGA 521
A + + Y M N ++ G PA+ +PCG V+ GLPVGL ++G
Sbjct: 429 ATPLPA-PDASREEYVSRALEMIANTAPFDVTGHPAMSVPCGLVD----GLPVGLMLVGR 483
Query: 522 AFDEGKLLKVGHIFEQT 538
FDE +L+ FE +
Sbjct: 484 HFDEATILRAAAAFEAS 500
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 237 bits (606), Expect = 3e-72
Identities = 154/495 (31%), Positives = 234/495 (47%), Gaps = 55/495 (11%)
Query: 51 QILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNE 109
I+ I ++ S V+A +AE L+R+ A+ L +F V+ L +A ID +
Sbjct: 1 SIVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGS 60
Query: 110 NVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPP-FDATAVKKVKEFDGIVVGKTNLD 168
+GPLAGV VK+ + + AG+++ + P DAT V+++ ++VG N+D
Sbjct: 61 PLGPLAGVPFAVKNLFDVAGLTTLAGAKINRDLAPAKRDATLVQRLSAAGAVLVGALNMD 120
Query: 169 EFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASF 228
EF G TTE++ + T NP D++R+ GGSSGGSAAAV+A SLGSDT GS+R PAS
Sbjct: 121 EFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASL 180
Query: 229 CGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVR 288
CGV GLKPTYGR+SR G+ + +SLD +G F SV D + + G D D + +
Sbjct: 181 CGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQDPFCTDR-- 238
Query: 289 VLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLE 348
VP L + GL++ V+ + D + V L
Sbjct: 239 ----PAEPTVP-----------LLPAGISGLRIAVLGGWFQQNADPEALAAVGRVAKALG 283
Query: 349 ELGCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAK 408
+ V LP A +++ +SE GN L+AL +R +
Sbjct: 284 ----ATTIVELPDAERARAAAFVITASEG------------GNL----HLDAL--RTRPQ 321
Query: 409 GFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAY 468
F + R+L G L A +Y +AQ+ R + + + D+LI+PA P +A
Sbjct: 322 DFDPATRDRLLAGAL-LPASWYA----QAQRFRHWFRDAIRELFQRVDVLIAPATPCSAP 376
Query: 469 KIGEKK-----NDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAF 523
IG++ + I T ++ AGLP L P P LP+G+Q+I A +
Sbjct: 377 LIGQETMIIDGVPVPVRANLGIFTQPISFAGLPVLAAPL----PRPGRLPIGVQLIAAPW 432
Query: 524 DEGKLLKVGHIFEQT 538
E L+ + E+
Sbjct: 433 REDLCLRAAAVLERQ 447
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 233 bits (597), Expect = 1e-70
Identities = 154/509 (30%), Positives = 230/509 (45%), Gaps = 62/509 (12%)
Query: 46 SPPESQILSI---RHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSI 101
P+ LS+ +L S ++ +L E L+R P L +F V L A+ I
Sbjct: 4 RDPDVASLSLTEAAAALRSGRLSCLELVEALLARAAALAP-LNAFTTVDAEGALAAARRI 62
Query: 102 DDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIV 161
D + LAGV + +KDNI T MP+TAG+ L + P DA V+++ + +
Sbjct: 63 DAQRAA-GAALLLAGVPIVIKDNINTAGMPTTAGTPALLGFVPATDAPVVQRLLDAGAVP 121
Query: 162 VGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGS 221
+GK N+ E G T+ + +F NP+D +R+ GGSSGG+AAAV+AR LG+DTGGS
Sbjct: 122 LGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTAAAVAARLAPAGLGTDTGGS 181
Query: 222 VRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDA 281
VR PA+ CGVVGL+PT GR S G++ + + D +G SVAD +L + I+G
Sbjct: 182 VRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAVITG------ 235
Query: 282 TSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVL 341
AAL L GL++GV +G+D V +
Sbjct: 236 -------------------------DAALPAPVALAGLRLGVPAAPFWDGLDPDVAAVAE 270
Query: 342 GAVSHLEELGCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNAL 401
A++ L G T E+ LP GL + ++ Y+ + E+ +
Sbjct: 271 AALAKLAAAGVTFVELDLP----GLHE----LNEAVGFPIALYEALADLRAYLRENGAGV 322
Query: 402 YGDSRAKGFGS-EVK--MRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDEN--D 456
+ S +V+ R L+ +S DAY R +Q ++ A + D
Sbjct: 323 SFEELVARIASPDVRAIFRDLLDPPQISE---DAYRAALDVGRPRLQAWYRQAFARHGLD 379
Query: 457 ILISPAAPSAAYKIGEKKNDPLAMYSGDIMTV---NVN---LAGLPALVLPCGFVEGGPI 510
++ P P A IG+ L + N + AGLP L LP G P
Sbjct: 380 AILFPTTPLTAPPIGDDDTVILNGAAVPTFARVIRNTDPASNAGLPGLSLPAGL---TPH 436
Query: 511 GLPVGLQMIGAAFDEGKLLKVGHIFEQTL 539
GLPVGL++ G A + +LL +G E+ L
Sbjct: 437 GLPVGLELDGPAGSDRRLLAIGRALERVL 465
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 215 bits (549), Expect = 1e-63
Identities = 150/513 (29%), Positives = 225/513 (43%), Gaps = 78/513 (15%)
Query: 63 EVTATQLAETY--------------LSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKR 107
++TA +L Y L R+ +P + +F V + L A++ +++ +R
Sbjct: 6 DLTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRR 65
Query: 108 NENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRP-PFDATAVKKVKEFDGIVVGKTN 166
E G L GV V +KD T P+ GSR ++ P DA AV +++E +++GKT
Sbjct: 66 GEPCGLLDGVPVSIKDIFLTRGWPTLRGSRAIDADGPWDVDAPAVARLREAGAVLLGKTT 125
Query: 167 LDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPA 226
EFG T+S + +T NPWD GGSSGG+AAAV+ +S+G+D GGSVR PA
Sbjct: 126 TPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPA 185
Query: 227 SFCGVVGLKPTYGRV-----SRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDA 281
SFCG G KPT+GRV S +G +A+ G +VAD +LL I+ D D
Sbjct: 186 SFCGTFGFKPTFGRVPLYPASPFGTLAHV------GPMTRTVADAALLLDVIARPDARDW 239
Query: 282 TSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVL 341
+ ++ F L + ++GL++ VD V + V
Sbjct: 240 S----------ALPPPTTSFLDAL-------DRDVRGLRIAYSPTLGYVDVDPEVAALVA 282
Query: 342 GAVSHLEELGCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNAL 401
AV L LG + EV P FS + A+++L + ++ L L+
Sbjct: 283 QAVQRLAALGARVEEVD-PGFSDPVEAFHVLWFAGAARLLRAL------PPGQRALLDPG 335
Query: 402 YGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISP 461
+G TY+ S Y DA RA + +F + D+L++P
Sbjct: 336 LRRIAERG-----------ATYSASD-YLDATAVRAALGARM--GAF---HERYDLLLTP 378
Query: 462 AAPSAAYKIGEKKNDPLAMYSGDIM-----TVNVNLAGLPALVLPCGFVEGGPIGLPVGL 516
P A++ G + P D T NL PA +PCGF GLPVGL
Sbjct: 379 TLPIPAFEAG--HDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAA---GLPVGL 433
Query: 517 QMIGAAFDEGKLLKVGHIFEQTLQGCRFVPPLI 549
Q++G + +L+V +EQ L P
Sbjct: 434 QIVGPRHSDDLVLRVARAYEQALPWPHGAPAAT 466
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 208 bits (532), Expect = 5e-61
Identities = 159/533 (29%), Positives = 240/533 (45%), Gaps = 65/533 (12%)
Query: 48 PESQILSIRHSLLSREVTATQLAETYLSRLKL---AEPQLKSFIHVSNNVLKEAQSIDDK 104
E + +++ ++ + A+QL YL R+ P+L + I ++ + +A ++D +
Sbjct: 4 LEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPDAEADAAALDAE 63
Query: 105 IKRNENVGPLAGVLVGVKDNICTVD-MPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVG 163
K + GPL G+ V +KDNI D MP+TAGS L RP DA V ++++ +++G
Sbjct: 64 RKAGKVRGPLHGIPVLLKDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDAGAVILG 123
Query: 164 KTNLDEFGMGSTTESSS-----FQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDT 218
K NL E+ +T SSS +T NP+ + R P GSS GS AAV+A V++G++T
Sbjct: 124 KANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAVAIGTET 183
Query: 219 GGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDR 278
GS+ PA+ G+VGLKPT G VSR G++ + S D G +VAD +L+AI+G D
Sbjct: 184 DGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAIAGGDP 243
Query: 279 LDATSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKS 338
D + S D+ A L++ L+G ++GV R L G V +
Sbjct: 244 ADPAT--------ASAPAPAVDY------VAALDADALRGARLGVARNYL--GYHPEVDA 287
Query: 339 TVLGAVSHLEELGCTLSEVSLPS---------------FSLGLPAYYILASSESSSNLSR 383
A++ L+ G + +V F GL AY L S+
Sbjct: 288 QFERALAELKAAGAVVIDVVDLDDGDWGEAEKVVLLHEFKAGLNAY--LRSTAPH----- 340
Query: 384 YDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTL 443
A N FG E+ + Y DA A R
Sbjct: 341 ---APVRTLADLIAFNRAQHAREMPYFGQELFEQAQAAPGLDDPAYLDA---LADAKRLA 394
Query: 444 IQKSFKTALDEN--DILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLP 501
+ AL E+ D L++P A+ I D + G T +AG P L +P
Sbjct: 395 GPEGIDAALKEHRLDALVAPTT-GPAWLIDLINGD---SFGGSSSTPAA-VAGYPHLTVP 449
Query: 502 CGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTLQGCRFVPPLIADGIP 554
G V+ GLPVGL IGAA+ E +LL++G+ +EQ R P + P
Sbjct: 450 MGQVQ----GLPVGLSFIGAAWSEARLLELGYAYEQATHA-RREPRFVETANP 497
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 194 bits (496), Expect = 7e-56
Identities = 142/512 (27%), Positives = 227/512 (44%), Gaps = 70/512 (13%)
Query: 61 SREVTATQLAETYLSRLKLAEPQLKSFIHV--SNNVLKEAQSIDDKIKRNENVGPLAGVL 118
R+V+ ++ YL+ ++ P + + + + + +L EA D + R E G L G+
Sbjct: 23 RRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEYRGWLHGMP 82
Query: 119 VGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTES 178
KD T + +T GS + + P DA V++++ I +GKTN EFG+GS T +
Sbjct: 83 QAPKDLAPTKGIRTTLGSPIFADQVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYN 142
Query: 179 SSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTY 238
+ T NP+D SR GGSSGG+AAA++ R V+ GSD GS+R PA+F V G +P+
Sbjct: 143 PVYGATRNPYDPSRSAGGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQ 202
Query: 239 GRVSRY-GLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQISVSQE 297
GRV G + L G G +V D +LL+ +G+D D +S++++
Sbjct: 203 GRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYDPRDP----------LSLAED 252
Query: 298 VPDFTSQLISAALLESKPLKGLKVGVIRETLENG---VDSGVKSTVLGAVSHLEELGCTL 354
F L L+G ++ + + G +++GV A++ L ELGC +
Sbjct: 253 PARFAQPL-------EADLRGKRIAWLGDW--GGYLPMEAGVLELCEAALATLRELGCDV 303
Query: 355 SEVSLPSFSLG-LPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSE 413
E +LP+F L ++ L ALY D +
Sbjct: 304 -EAALPAFPPERLWRAWLTLRHFLV----------------GGSLLALYRDPARRALLKP 346
Query: 414 VKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAA---------- 463
+ + G AL+A Y A +R+ ++ + D L P A
Sbjct: 347 EAIWEIEGGLALTA---AQVY-EASVIRSAWYQALLRLFERYDFLALPTAQVFPFDAEWR 402
Query: 464 -PSAAYKIGEKKNDPLAMYSGDIMTVNV--NLAGLPALVLPCGFVEGGPIGLPVGLQMIG 520
P A I + D + M V V LAGLPA+ +P GF GLP+G+Q+IG
Sbjct: 403 WPRA---IAGRAMDTYHRW----MEVVVPATLAGLPAISVPVGF---NAAGLPMGMQIIG 452
Query: 521 AAFDEGKLLKVGHIFEQTLQGCRFVPPLIADG 552
+ +L++ H +EQ + PP +
Sbjct: 453 PPRADLAVLQLAHAYEQATDWVQRRPPALLAA 484
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 182 bits (464), Expect = 3e-51
Identities = 147/521 (28%), Positives = 237/521 (45%), Gaps = 74/521 (14%)
Query: 44 STSPPESQILSIRHSLLSREVTATQLAETYLSRLKLAE---PQLKSFIHVSNNVLKEAQS 100
+ E I I+ ++ ++T+ +L YL R+ + P++ S + ++ + + A++
Sbjct: 7 TLLQKELTIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPDAIFIAEA 66
Query: 101 IDDKIKRNENVGPLAGVLVGVKDNICTVD-MPSTAGSRVLENYRPPFDATAVKKVKEFDG 159
+D + K GPL G+ V +KDNI T D M ++AG+ LE + DA V K++E
Sbjct: 67 LDHERKIKGVRGPLHGIPVLLKDNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGA 126
Query: 160 IVVGKTNLDEFGMGSTTE-----SSSFQVTANPWD---ISRVPGGSSGGSAAAVSARQCV 211
+++GK N+ E + E S+ T NP+ GGSS GSA AV+A V
Sbjct: 127 VILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTV 186
Query: 212 VSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLS 271
VS+G++T GS+ PA VVG+KPT G +SR G+I + S D G F +V D ILL
Sbjct: 187 VSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLG 246
Query: 272 AISGHDRLDATSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENG 331
+++G D D + K S D+T L++ L G K+GV +
Sbjct: 247 SLTGVDEKDVVTHK-------SEGIAEHDYTK------YLDANGLNGAKIGVYNNAPKEY 293
Query: 332 VDSGVKSTVL--GAVSHLEELGCTLSE-VSLPSF----SLGLPAYYI-------LASSES 377
+SG L + L G T+ E + +PSF S G+ Y + L+ S
Sbjct: 294 YESGEYDEKLFKETIEVLRSEGATVVEDIDIPSFHREWSWGVLLYELKHSLDNYLSKLPS 353
Query: 378 SSNLSRYDGVRYGNQAAAEDLNAL-YGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKR 436
+ + + N+ AE AL YG ++ + + L L+A D Y+ +
Sbjct: 354 TIPVHSISELMEFNENIAE--RALKYGQTKLE--RRKDFPNTLRNPEYLNARLEDIYFSQ 409
Query: 437 AQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLP 496
Q + ++K D ++ P+ I K AG P
Sbjct: 410 EQGIDFALEKY------NLDAILFPS--YIGSTICAK-------------------AGYP 442
Query: 497 ALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQ 537
++ +P G++EG G P G+ + AF EG L+K+ + FEQ
Sbjct: 443 SIAIPAGYMEG---GRPFGITLASTAFSEGTLIKLAYAFEQ 480
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 180 bits (459), Expect = 1e-49
Identities = 150/512 (29%), Positives = 223/512 (43%), Gaps = 76/512 (14%)
Query: 44 STSPPESQILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHV--SNNVLKEAQSI 101
P + + S+R + + +T + +R+ A + +IH+ ++L +A ++
Sbjct: 1 MPLPTDLTLASLRAAYRAGTLTPRAVVAALYARI-AAVDDPEVWIHLRPEADLLAQAAAL 59
Query: 102 DDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIV 161
+ + PL GV VKDNI +P+TA Y P DAT V +++ IV
Sbjct: 60 EARDPAA---LPLYGVPFAVKDNIDVAGLPTTAACPAFA-YTPERDATVVARLRAAGAIV 115
Query: 162 VGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGS 221
+GKTNLD+F G S + N +D V GGSS GSA AV+ +LG+DT GS
Sbjct: 116 IGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLVSFALGTDTAGS 175
Query: 222 VRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDA 281
R PA+F +VGLKPT G +S G++ +LD + F +V D +L+ ++G D D
Sbjct: 176 GRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAGFDPADP 235
Query: 282 TSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIR-ETLENGVDSGVKSTV 340
S R +P G +VGV R LE D+ ++
Sbjct: 236 YS----RANPADAPAALPA-----------------GPRVGVPRAAQLEFFGDAEAEAAF 274
Query: 341 LGAVSHLEELGCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDG--V--RYGNQAAAE 396
A++ LE LG L E+ F L A +L Y+G V RY AA
Sbjct: 275 AAALARLEALGAELVEIDFSPF---LEAARLL-----------YEGPWVAERY---AAVG 317
Query: 397 DLNALYGDS-----RAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTA 451
+ + D+ R I+ G A SA DA+ RA ++++ +
Sbjct: 318 EFLEAHPDAVDPVVRG----------IIAGAAAFSA--ADAF--RALYRLAELRRAAEAV 363
Query: 452 LDENDILISPAAPSAAYKIGEKKNDPLAMYS--GDIMTVNVNLAGLPALVLPCGFVEGGP 509
L D L+ P AP+ I E DP+ + S G T VNL L AL +P GF
Sbjct: 364 LAGIDALLVPTAPT-HPTIAEVAADPIGLNSRLG-TYTNFVNLLDLCALAVPAGFRAD-- 419
Query: 510 IGLPVGLQMIGAAFDEGKLLKVGHIFEQTLQG 541
GLP G+ +I AF + L + + L
Sbjct: 420 -GLPFGVTLIAPAFADQALADLAARLQAALAL 450
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 179 bits (455), Expect = 2e-49
Identities = 138/455 (30%), Positives = 191/455 (41%), Gaps = 57/455 (12%)
Query: 87 FIHV--SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRP 144
+I + ++L +A ++D + R E + PL GV VKDNI +P+TA Y P
Sbjct: 4 WISLLSEEDLLAQAAALDARDARPERL-PLYGVPFAVKDNIDVAGLPTTAACPAFA-YTP 61
Query: 145 PFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAA 204
DAT V ++ IVVGKTNLD+F G S + N +D + + GGSS GSA A
Sbjct: 62 EEDATVVALLRAAGAIVVGKTNLDQFATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVA 121
Query: 205 VSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVA 264
V+ +LG+DT GS R PA+ +VGLKPT G VS G++ SLD + F +VA
Sbjct: 122 VARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVA 181
Query: 265 DTGILLSAISGHDRLDATSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVI 324
D +L + D D S A + +VGV
Sbjct: 182 DAEQVLRIAAAPDARDPYSR---------------------PLPAAALRRFPPPPRVGVP 220
Query: 325 R-ETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSL-PSFSLGLPAYYILASSESSSNLS 382
R LE DS ++ AV LE LG + E+ P Y E
Sbjct: 221 RAAQLEFFGDSQAEAAFAAAVERLEALGVEVVEIDFAPFLETAALLY------EGPWVAE 274
Query: 383 RYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGTYALSAG-YYDAYYKRAQQVR 441
RY V +A + L+ V I+ SA + A Y+ A R
Sbjct: 275 RYAAVGEFVEAQPDALD-------------PVVRGIITSATRFSAADAFAAQYRLAALRR 321
Query: 442 TLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVN-VNLAGLPALVL 500
+ D+L+ P AP+ I E DP+ + S N VNL L A+ +
Sbjct: 322 K-AEALLAGV----DVLLVPTAPT-HPTIEEVLADPVGLNSRLGTYTNFVNLLDLCAVAV 375
Query: 501 PCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIF 535
P GF GLP G+ +IG AF + L +G
Sbjct: 376 PAGFR---SDGLPFGVTLIGPAFHDAALASLGRRL 407
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 175 bits (446), Expect = 6e-49
Identities = 140/502 (27%), Positives = 224/502 (44%), Gaps = 94/502 (18%)
Query: 61 SREVTATQLAETYLSRLKLAEPQLKSF-IHVSNNVLKEAQSIDDKIKRNENVGPLAGVLV 119
+R ++ ++ E L+ + EP L + A++ + + E +GPL GV V
Sbjct: 18 ARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPV 77
Query: 120 GVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESS 179
+K+NI T +P G+ + DA +++E +++ KT + ++GM S+ SS
Sbjct: 78 TIKENIATRGVPVPLGTAATDLPPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSS 137
Query: 180 SFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYG 239
+T NPWD+ + PGGSS G+ AA +A + LG+D GGSVR PA +CG+VGLKP+ G
Sbjct: 138 FHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLG 197
Query: 240 RVSRYGLIAYASSLD------VIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQIS 293
R+ +D G +V D +L+S +S D D TS
Sbjct: 198 RI----------PIDPPYTGRCAGPMTRTVDDAALLMSVLSRPDARDGTS---------- 237
Query: 294 VSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENG----VDSGVKSTVLGAVSHLEE 349
+P Q I + L+ ++GL++G++ L+ G VD V++ V A E
Sbjct: 238 ----LP---PQDIDWSDLD-IDVRGLRIGLM---LDAGCGLAVDPEVRAAVEAAARRFEA 286
Query: 350 LGCTLSEVSLPSFSLGLPAYYILASSESSSNLSR--YDGV-RYGNQAAAEDLNALYGDSR 406
G + V P F L+R DG+ R+ DL AL + R
Sbjct: 287 AGAIVEPV--PPF------------------LTRAMLDGLDRFWRARLWSDLAALPPERR 326
Query: 407 AK---------GFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDI 457
AK G+++ G A+ + + +R + F E D
Sbjct: 327 AKVLPYIRRWAEGGADLS-----GVEAVRG------FNQTFAMRAAAARLFA----EFDY 371
Query: 458 LISPAAPSAAY--KIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVG 515
++SP AP A+ + NDP + TV N++ PA + CGF GLP+G
Sbjct: 372 VLSPVAPVPAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFT---RDGLPIG 428
Query: 516 LQMIGAAFDEGKLLKVGHIFEQ 537
LQ++G FD+ +L++ FE
Sbjct: 429 LQIVGPRFDDLGVLRLAKAFEG 450
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 167 bits (425), Expect = 6e-46
Identities = 139/503 (27%), Positives = 211/503 (41%), Gaps = 69/503 (13%)
Query: 61 SREVTATQLAETYLSRLKLAEPQLKSFI-HVSNNVLKEAQSIDDKIKRNENVGPLAGVLV 119
SR+V+A + AE L+RL P + + + H L +A ++D R ++ GPLAGV V
Sbjct: 19 SRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAGVPV 78
Query: 120 GVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESS 179
VK N+ +T G R+ ++ P D+ V +++ +++G+TN F T++
Sbjct: 79 TVKVNVDQAGFATTNGVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNP 138
Query: 180 SFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYG 239
T NPWD S PGGSSGG+AAAV+A ++ G+D GGS+R PA CGV GL+PT G
Sbjct: 139 LHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLG 198
Query: 240 RVSRY-------GLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQI 292
RV Y + A S V G +VAD + L+A++ D D
Sbjct: 199 RVPAYNASSPERPIGAQLMS--VQGPLARTVADLRLALAAMAAPDPRDPW---------- 246
Query: 293 SVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGC 352
VP A LE P +V + VD V++ + A LE+ G
Sbjct: 247 ----WVP---------APLEGPPRP-KRVALCVRPDGLDVDPEVEAALRDAARRLEDAGW 292
Query: 353 TLSEVS-LPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFG 411
T+ EV P L + L G+ A L +A+
Sbjct: 293 TVEEVDDTPPLREAAELQERLWLGDGYEALLA-AAEAEGDPGALAALRGQRA--KARPLD 349
Query: 412 SEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIG 471
AGY +A +RA TL + ++ ++ +L+ P + +
Sbjct: 350 --------------LAGYMNALARRA----TLT-RQWQLFFEDYPLLLMPVSAELPFPDD 390
Query: 472 EKKNDPLAM---YSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKL 528
+ + + + + GLP L +P G V G+PVG+Q++ F E
Sbjct: 391 LDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLVG----GVPVGVQLVAGRFREDLC 446
Query: 529 LKVGHIFEQTLQGCRFVPPLIAD 551
L G E R PP D
Sbjct: 447 LAAGEAIEA-----RGGPPTPID 464
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 167 bits (424), Expect = 8e-46
Identities = 136/515 (26%), Positives = 215/515 (41%), Gaps = 80/515 (15%)
Query: 45 TSPPESQILSIRHSLLSREVTATQLAETYLSRLKLAEPQ---LKSFIHVS-NNVLKEAQS 100
T + ++ L + T+ L E L+R+ A+P + F HV + A +
Sbjct: 1 TFTMLPTLAALAADLAAGRTTSRALVEAALARI--ADPAGEGARVFTHVDADAARAAADA 58
Query: 101 IDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRP-PFDATAVKKVKEFDG 159
D PLAG+ V VKD + AGSRVL + P DA AV +++
Sbjct: 59 ADALRAAGAAPSPLAGIPVSVKDLFDVAGQVTRAGSRVLADAPPAAADAPAVARLRRAGA 118
Query: 160 IVVGKTNLDEF---GMGSTTESSSFQVTANPW----DISRVPGGSSGGSAAAVSARQCVV 212
+++G+TN+ EF G+G + + NPW R+PGGSS G+A +V+
Sbjct: 119 VLIGRTNMTEFAFSGLGL---NPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMAAA 175
Query: 213 SLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSA 272
+LG+DTGGS+R PA+ CG+ G KPT RV G + +++LD IG SVA ++ +
Sbjct: 176 ALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDAV 235
Query: 273 ISGHDRLDATSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGV 332
++G + + ++PL+GL++ V + +G+
Sbjct: 236 LAGEEPVV------------------------------PAARPLEGLRLAVPTTVVLDGL 265
Query: 333 DSGVKSTVLGAVSHLEELGCTLSEVSLPSFS--LGLPAYYILASSESSSNLSRYDGVRYG 390
D+ V + A+ L G + E++ P + + A +++ES Y R
Sbjct: 266 DATVAAAFERALKRLSAAGAIIEEIAFPELAELAEINAKGGFSAAES------YAWHRPL 319
Query: 391 NQAAAEDLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKT 450
Y D R V RIL G +A Y D RA
Sbjct: 320 LARHR----DQY-DPR-------VAARILRGEPMSAADYIDLLAARAA-----WIARAAA 362
Query: 451 ALDENDILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVN----VNLAGLPALVLPCGFVE 506
L D L+ P P +I + + D A + + + + +N AL LPC
Sbjct: 363 RLARFDALVMPTVPIVPPRIADLEADDAAFFRTNALLLRNPSLINFLDGCALSLPC---- 418
Query: 507 GGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTLQG 541
P PVGL + GA + +LL + E L+G
Sbjct: 419 HAPGEAPVGLMLAGAPGRDDRLLAIALAVEAVLRG 453
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 162 bits (412), Expect = 3e-44
Identities = 135/491 (27%), Positives = 214/491 (43%), Gaps = 68/491 (13%)
Query: 59 LLSREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGV 117
L E+TA L E YL R++ + L+++ V + EA++ ++ E + PL GV
Sbjct: 18 LADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERL-PLLGV 76
Query: 118 LVGVKDNICTVDMPSTAGSRVLENYRPPFDATA--VKKVKEFDGIVVGKTNLDEFGMGST 175
+ +KD++ +T GS + P + A V++++ +++GKTN+ E +
Sbjct: 77 PIAIKDDVDVAGEVTTYGS---AGHGPAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPF 133
Query: 176 TESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLK 235
TES +F T NPWD +R PGGSSGGSAAAV+A V+LGSD GGS+R P+++CG+ GLK
Sbjct: 134 TESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLK 193
Query: 236 PTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQISVS 295
P R+S L V G SV D +LL DAT++
Sbjct: 194 PQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLL---------DATTT----------- 233
Query: 296 QEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLS 355
VP + ++AA E L+ + L + V A + L +LG +
Sbjct: 234 --VPGPEGEFVAAAAREPGRLRIALSTRVPTPLPVRCGKQELAAVHQAGALLRDLGHDVV 291
Query: 356 EVSLPSFSLGLPAYYILASSESSSNLSRY-DGVRYGNQAAAEDLNALYGDSRAKGFGSEV 414
P + A Y L R+ G+ +D +A R E
Sbjct: 292 VRD-PDYPAATYANY----------LPRFFRGIS-------DDADAQAHPDRL-----EA 328
Query: 415 KMRIL--MGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGE 472
+ R + +G++ S A + IQ F D+ D++++P + +IG
Sbjct: 329 RTRAIARLGSFF-SDRRMAALRAAEVVLSARIQSIF----DDVDVVVTPGTATGPSRIGA 383
Query: 473 KKNDPLAMYSGDIMTVNV-----NLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGK 527
+ ++ NL G PA V+P F GLP+ +Q++G +DE
Sbjct: 384 YQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGD---GLPMSVQLVGRPYDEAT 440
Query: 528 LLKVGHIFEQT 538
LL + E
Sbjct: 441 LLALAAQIESA 451
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 163 bits (414), Expect = 7e-44
Identities = 143/505 (28%), Positives = 226/505 (44%), Gaps = 59/505 (11%)
Query: 55 IRHSLLSREVTATQLAETYLSRLK---LAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENV 111
I LS E +L YL R++ L S ++ N ++EA+ +D + RN+
Sbjct: 80 IDDGKLSYE----ELTSIYLFRIQEHDQNGITLNSVTEINPNAMEEARKLDQERSRNKK- 134
Query: 112 GPLAGVLVGVKDNICTV-DMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDE- 169
L G+ V VKDN+ T MP++AG+ VL+++ DAT VK++KE V+GK N+ E
Sbjct: 135 SNLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWIADQDATIVKQLKEEGAFVLGKANMSEW 194
Query: 170 -----FGMGSTTESSSFQVTANPWD-ISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVR 223
F M S Q NP+ I GSS GSA V+A +++G++T GS+
Sbjct: 195 ANYLSFTMPSGYSGKKGQ-NLNPYGPIKFDTSGSSSGSATVVAADFAPLAVGTETTGSIV 253
Query: 224 QPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATS 283
PA+ VVGL+P+ G VSR G+I A +LD G +V D L +A+ G+D D +
Sbjct: 254 APAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNAMIGYDEKDVMT 313
Query: 284 SKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGA 343
K +E D+T L LKG K+G++ + D K+
Sbjct: 314 EK-------VKDKERIDYTKD------LSIDGLKGKKIGLLFSV--DQQDENRKAVAEKI 358
Query: 344 VSHLEELGCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYG 403
L++ G L++ + + G+ L E N++ Y + + L +
Sbjct: 359 RKDLQDAGAILTDYIQLN-NGGVDNLQTL-EYEFKHNVNDYFSQQK--NVPVKSLEEIIA 414
Query: 404 DSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAA 463
++ + K RI G + A A K + ++Q S + A E D +
Sbjct: 415 FNK-----KDSKRRIKYGQTLIEASEKSAITK--DEFEKVVQTSQENAKKELDRYLV--- 464
Query: 464 PSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAF 523
EK D L M + + + ++ +AG P L +P G+ G PVG +G F
Sbjct: 465 --------EKGLDALVMINNEEVLLSA-VAGYPELAVPAGYDNNGE---PVGAVFVGKQF 512
Query: 524 DEGKLLKVGHIFEQTLQGCRFVPPL 548
E +L +G+ +EQ + R P L
Sbjct: 513 GEKELFNIGYAYEQQSKN-RKPPKL 536
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 161 bits (410), Expect = 1e-43
Identities = 136/512 (26%), Positives = 223/512 (43%), Gaps = 67/512 (13%)
Query: 59 LLSREVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGV 117
L + EV++ +L + ++R++ + ++ + + + A++ D R E GPL G+
Sbjct: 21 LAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARGER-GPLLGI 79
Query: 118 LVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTE 177
V VK++ +P+T G L +Y P DA AV ++K +++GKTN+ G+
Sbjct: 80 PVTVKESFNVAGLPTTWGFPDLRDYVPAEDAVAVARLKAAGAVILGKTNVPL-GLQDWQS 138
Query: 178 SSS-FQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKP 236
+ + T NPWD++R PGGSSGGSAAA++A +S+GSD GGS+R PA +CGV KP
Sbjct: 139 YNEIYGTTNNPWDLARTPGGSSGGSAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKP 198
Query: 237 TYGRVSRYGLIAYAS-------SLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRV 289
T G V G I + L V G S D +LL ++G D LD + ++
Sbjct: 199 TLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALLLDVMAGPDPLDGGVAYRLA- 257
Query: 290 LQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEE 349
L + + DF +L+ PL L D+ V++ + + L +
Sbjct: 258 LPPARHGRLKDF-----RVLVLDEHPL-----------LP--TDAAVRAAIERLAAALAD 299
Query: 350 LGCTLSEVS--LPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRA 407
G + S LP + Y L + S++ Y D++A
Sbjct: 300 AGARVVRHSPLLPDLAESARLYMRLLFAASAARFP----------------PDAYADAQA 343
Query: 408 KGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAA 467
+ G R L A + A R ++ +++ E D+++ P P+ A
Sbjct: 344 RAAGLSADDRSLAAERLRGAVLSHRDWLFADAAREELRAAWRRFFAEFDVVLCPVTPTPA 403
Query: 468 YKIGEKKNDPLAMYSGDIMTVNV------------NLAGLPALVLPCGFVEGGPIGLPVG 515
+ DI V+ L GLPA +P G GLPVG
Sbjct: 404 F--PHDHAPDPLERRIDIDGVSYPYWDQLVWAGLATLPGLPATAIPIGLSAT---GLPVG 458
Query: 516 LQMIGAAFDEGKLLKVGHIFEQTLQGCRFVPP 547
+Q++G A ++ L++ + E+ G F PP
Sbjct: 459 VQIVGPALEDRTPLRLAELLEEEFGG--FRPP 488
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 151 bits (383), Expect = 1e-40
Identities = 111/427 (25%), Positives = 158/427 (37%), Gaps = 89/427 (20%)
Query: 112 GPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATA--VKKVKEFDGIVVGKTNLDE 169
GPLAG+ VKD + G+ P TA V+K+ VGKT DE
Sbjct: 24 GPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGKTQTDE 83
Query: 170 FGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFC 229
+++ + NP RVPGGSS GSAAAV+ +LG+DTGGSVR PASFC
Sbjct: 84 LAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFC 143
Query: 230 GVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSV---ADTG-ILLSAISGHDRLDATSSK 285
G+ GL+PT+GR+S G++ A S D +G F + G +LL + L
Sbjct: 144 GLYGLRPTHGRISLEGVMPLAPSFDTVGWFARDIALLERVGEVLLGDDAQEFPLT----- 198
Query: 286 QVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVS 345
R+L + D + AAL + LG
Sbjct: 199 -QRLLIPVDLFALLD---PAVRAALEAALAR--------------------LRPHLGPAK 234
Query: 346 HLEELGCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDS 405
++ +SL + A+ +L ++E A + S
Sbjct: 235 -----PASVPPLSLDEWYE---AFRVLQAAE----------------AWETH--GAWISS 268
Query: 406 RAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPS 465
G V R +A A + A+ R + L + +L+ P P
Sbjct: 269 GNPQLGPGVADR-----FAAGAEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPG 323
Query: 466 AAYKIGEKKNDPLAMYSGDIMTVNVN----------LAGLPALVLPCGFVEGGPIGLPVG 515
AA PL + + LAGLP + LP V+ G P G
Sbjct: 324 AA---------PLRGAPFEALEAYRERALRLLCIAGLAGLPQISLPLASVD----GAPFG 370
Query: 516 LQMIGAA 522
L +IG
Sbjct: 371 LSLIGPR 377
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 152 bits (387), Expect = 2e-40
Identities = 135/491 (27%), Positives = 210/491 (42%), Gaps = 79/491 (16%)
Query: 59 LLSREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGV 117
L S VT+ +L L R++ ++P L +F V + L EA D + + + PL GV
Sbjct: 27 LASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDRL-PLLGV 85
Query: 118 LVGVKDNICTVDMPSTAGSRVLENYRPPF--DATAVKKVKEFDGIVVGKTNLDEFGMGST 175
+ VKD++ +P+ G+ PP D+ V++++ ++VGKTN E G
Sbjct: 86 PIAVKDDVDVAGVPTAFGT---AGEVPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPF 142
Query: 176 TESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLK 235
T +F T NPW PGGSSGGSAAAV+A ++GSD GSVR PA++ +VG+K
Sbjct: 143 TSGPAFGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIK 202
Query: 236 PTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRV------ 289
P GR+S + L + L V G +VAD +LL A SG+ D V V
Sbjct: 203 PQRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDAASGNHPGDRHRPPPVTVSDAVGR 262
Query: 290 ----LQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVS 345
L+I++S P FT G + +++ V
Sbjct: 263 APGPLRIALSTRFP-FT---------------GFPA---------KLHPEIRAAVRRVAE 297
Query: 346 HLEELGCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDS 405
L LG T+ P + L L ++ S++ L + R G+ D
Sbjct: 298 QLALLGHTVVPAD-PDYGLRLGLNFL---PRSTAGLRDWAE-RLGDPVLL--------DP 344
Query: 406 RAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPS 465
R S +M L+ L RA + Q+ + D D++++P
Sbjct: 345 RTV---SNARMGRLLSQAILRLA-------RAAEAA--AQRRVGSIFDIVDVVLAPTTAQ 392
Query: 466 AAYKIGEKKNDPLAMYSGDIMTVNV-------NLAGLPALVLPCGFVEGGPIGLPVGLQM 518
++G D L ++ D + N+ G P++ +P GF GLP+G Q+
Sbjct: 393 PPPRVGAF--DRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSD---GLPIGAQL 447
Query: 519 IGAAFDEGKLL 529
+G A E L+
Sbjct: 448 MGPANSEPLLI 458
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 141 bits (358), Expect = 8e-37
Identities = 123/465 (26%), Positives = 192/465 (41%), Gaps = 82/465 (17%)
Query: 95 LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPP-FDATAVKK 153
++EA++ + + ++G L G+ + KD +TAGS VL N P DA V
Sbjct: 51 MREAEASSARWRAGRSLGLLDGIPIAWKDLFDVAGSVTTAGSVVLANAAPASRDAAVVAL 110
Query: 154 VKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW--DISRVPGGSSGGSAAAVSARQCV 211
+ + +G+TN+ EF + + NP D+ R+PGGSS GSA AV+A
Sbjct: 111 LARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVP 170
Query: 212 VSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLS 271
V++G+DTGGSVR PA+F G+VG K T GR S G+ A SLD +G SV D + +
Sbjct: 171 VAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDA 230
Query: 272 AISGHDRLDATSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENG 331
A+ G T+ + PL GL++ V + +
Sbjct: 231 AMRG-------------------------LTAPDVVRR-----PLAGLRLVVPETVVFDD 260
Query: 332 VDSGVKSTVLGAVSHLEELGCTLSEVSLPSFS--LGLPAYY-ILASSES-SSNLSRYDGV 387
+ GV++ AV L+ G + + P+F L L A + L ++E+ + + R DG
Sbjct: 261 AEPGVRAAFEAAVERLQAAGALVERQAFPAFQEILDLIARHGWLVTAEAFALHQERLDG- 319
Query: 388 RYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKS 447
A + D R V R +G ++ Y R + +
Sbjct: 320 -----PDAARM-----DPR-------VVKRTRLGRKITASDYIALLEARER-----LIAQ 357
Query: 448 FKTALDENDILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGL-----------P 496
L +L +P A + + D D + NL L
Sbjct: 358 VTRELG-GALLATPTVAHVAPPLAPLEAD-------DDLFFATNLKTLRNTMPGNFLDMC 409
Query: 497 ALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTLQG 541
+ LPCG G G+PVGL + A + +LL+ E ++G
Sbjct: 410 GVSLPCGT---GAAGMPVGLLLSAPAGRDERLLRAALAVEAVIRG 451
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 136 bits (343), Expect = 1e-34
Identities = 132/516 (25%), Positives = 209/516 (40%), Gaps = 95/516 (18%)
Query: 62 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVG 120
+VT +L + + K P L + + L+EA+ +R+ + P AGV +
Sbjct: 16 GQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAK------QRDFSGKPFAGVPIF 69
Query: 121 VKD-NICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESS 179
+KD ST+GSR+ +NY+ VK++++ I++G++N EFG + ++SS
Sbjct: 70 LKDLGQELKGQLSTSGSRLFKNYQATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSS 129
Query: 180 SFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYG 239
P+D SR GGSSGG+AA VS+ ++ SD GGS+R PASF G++GLKP+ G
Sbjct: 130 LHGPVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSIRIPASFNGLIGLKPSRG 189
Query: 240 RVSRYGLIAYAS--SLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQISVSQE 297
R+ G +Y V SV DT LL + Q+ E
Sbjct: 190 RIP-VGPGSYRGWQGASVHFALTKSVRDTRRLLYYL---------QMYQM---------E 230
Query: 298 VPDFTSQLISAALLESKPLKGLKVGVI-RETLENGVDSGVKSTVLGAVSHLEELGCTLSE 356
P F +S L + LK+ R + V + AV+ L E G + E
Sbjct: 231 SP-FPLATLSKESLFQSLQRPLKIAFYQRSPDGSPVSLDAAKALKQAVTFLREQGHEVVE 289
Query: 357 VSLPSFSLGLPA----YYILASSESSSNLSRYDGVR--YGNQAAAEDLN----ALYGDSR 406
+ F L + YYI+ S E++ + +D + G +D+ A+Y +
Sbjct: 290 LE--EFPLDMTEVMRSYYIMNSVETA---AMFDDIEDALGRPMTKDDMETMTWAIYQSGQ 344
Query: 407 AKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSA 466
I Y+ +D Y + D+L++ +
Sbjct: 345 ----------DIPAKRYSQVLQKWDTYSATMASF-----------HETYDLLLTFTTNTP 383
Query: 467 AYKIGEKKNDPLAM--------YS------------GDIMTVN-----VNLAGLPALVLP 501
A K G+ D M +S + + NL G PA+ LP
Sbjct: 384 APKHGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYTALANLTGQPAISLP 443
Query: 502 CGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQ 537
+ GLP+G+Q+I A E LL + FE
Sbjct: 444 TYETKE---GLPMGVQLIAAKGREDLLLGIAEQFEA 476
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 131 bits (330), Expect = 3e-33
Identities = 112/458 (24%), Positives = 188/458 (41%), Gaps = 76/458 (16%)
Query: 97 EAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPF-DATAVKKVK 155
EA + D + + ++GPL G +V +KD P+ AGS + + P DA V++++
Sbjct: 29 EADAADARRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRDAPPAGADALIVQRLR 88
Query: 156 EFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLG 215
+++GKT++ EF + + N D +R+PGGSS G+A +V+ +++G
Sbjct: 89 NAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIG 148
Query: 216 SDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISG 275
SDTGGSVR PA+ G+VG KPT R+ G + SLD IG +VAD + ++G
Sbjct: 149 SDTGGSVRIPAALNGLVGFKPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAVMAG 208
Query: 276 HDRLDATSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSG 335
E P LE P+ GL++G+ + L ++
Sbjct: 209 ---------------------EKP---------IPLEVLPVAGLRIGLPKGYLLADMEPD 238
Query: 336 VKSTVLGAVSHLEELGCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYD-GVRYGNQAA 394
V + +++ LE+ G ++++++ ++R R G+ A
Sbjct: 239 VAAAFEASLAALEKAGARIADLAIDDL------------------IARLAEATRIGSIAG 280
Query: 395 AE--DLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTAL 452
E ++A + VK + Y+ RA R A+
Sbjct: 281 IEASHIHADWLADLDANVDIRVKRPLSRRIKVPLEAYHRLMRTRAALAR---------AM 331
Query: 453 DEN----DILISPAAPSAAYKIGEKKNDPLAMYS--GDIMTVNV---NLAGLPALVLPCG 503
DE D+ PA P A I D Y +++ N N L ++ LP
Sbjct: 332 DERLAGFDMFALPATPIVAPTIASVSEDE-EEYDRVENLLLRNTQVANQFDLCSITLP-- 388
Query: 504 FVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTLQG 541
+ G LP GL + + +LL E+ L+
Sbjct: 389 -MPGMA--LPAGLMLTARNGSDRRLLAAAASVEKLLEH 423
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 122 bits (308), Expect = 6e-30
Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 61 SREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVG 120
+ V+A ++ E ++R + P L + + + D R G G G
Sbjct: 26 AGRVSAAEVVEAAIARAEAVNPALNALAYAA---------FDRARDRAARPGSQGGFFSG 76
Query: 121 V----KDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTT 176
V KDN+ +P+ GS D+ ++ I +GKT L EFG ++T
Sbjct: 77 VPTFIKDNVDVAGLPTMHGSDAWTPRPAKADSDFARQFLATGLISLGKTQLPEFGFSAST 136
Query: 177 ESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKP 236
E NPW+ G SSGGSAA V+A ++ +D GGS+R PA+ CG+VGLKP
Sbjct: 137 EHPRLGPVRNPWNTDYSAGASSGGSAALVAAGVVPIAHANDGGGSIRIPAACCGLVGLKP 196
Query: 237 TYGRV 241
+ GR+
Sbjct: 197 SRGRL 201
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 106 bits (265), Expect = 3e-24
Identities = 82/287 (28%), Positives = 138/287 (48%), Gaps = 41/287 (14%)
Query: 17 PANNKPRHFHTKPV--LSSSQPVTDQSPSS-------TSPPESQILSI--------RHSL 59
P NN + + KPV + S + SPS +P +Q+ ++ +
Sbjct: 103 PKNNPQKKQNIKPVKPIPSKPEKPEDSPSPFYDKARVMTPINNQLATLDLAVLEAKEPLI 162
Query: 60 LSREVTATQ------------LAETYLSRLKLAEPQ---LKSFIHVSNNVLKEAQSIDDK 104
+ +VT Q LA YL+R+K + L + ++ ++ EA+ +D
Sbjct: 163 IGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPTIIAEAEQLD-- 220
Query: 105 IKRNE-NVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVG 163
K N N L G+ V +KDNI T ++P++AG+ L+++ DAT V+ +K +++G
Sbjct: 221 -KENTTNKSALYGMPVLLKDNIGTKELPTSAGTVALKDWVIGKDATIVENLKANGALILG 279
Query: 164 KTNLDEFGMGSTTE-----SSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDT 218
KTN+ E+ G + S + NP+ + P GSS GSA A ++ +++G++T
Sbjct: 280 KTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSATAATSDFAAIAIGTET 339
Query: 219 GGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVAD 265
GS+ PAS VG KP+ G V+ G+I +S D G +V D
Sbjct: 340 NGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVND 386
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 103 bits (257), Expect = 1e-23
Identities = 53/112 (47%), Positives = 66/112 (58%)
Query: 148 ATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSA 207
A AV V VGKT +DE E++ + NP RVPGGSS GSA AV A
Sbjct: 63 APAVLAVLRGGATCVGKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGA 122
Query: 208 RQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCF 259
+ SLG+DTGGSVR PAS+CG+ G +P++G VS G+I A S D +G F
Sbjct: 123 KLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWF 174
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 77.1 bits (190), Expect = 7e-15
Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 10/239 (4%)
Query: 49 ESQILSIRHSLLSREVTATQLAETYLSRLKL-----AEPQLKSFIHVSNNVLKEAQSIDD 103
E I +R +L S TA +L + YL+R+ L + + + + LKEA++ D
Sbjct: 6 EVSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPDALKEAEASDA 65
Query: 104 KIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVG 163
+ R E +GPL G+ KD+ + + +GS ++ DA +++++ I +G
Sbjct: 66 RRARGETLGPLDGIPYTAKDSYLVKGLTAASGSPAFKDLVAQRDAFTIERLRAAGAICLG 125
Query: 164 KTNLDEFGMGSTTESSSFQVTANPWD----ISRVPGGSSGGSAAAVSARQCVVSLGSDTG 219
KTN+ G + + +P++ + GSS G+ A +A L +T
Sbjct: 126 KTNMPPMANGG-MQRGVYGRAESPYNAAYLTAPFASGSSNGAGTATAASFSAFGLAEETW 184
Query: 220 GSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDR 278
S R PAS G+ P+ G +S G ++DV+ + ++AD +L I D
Sbjct: 185 SSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDVIVADDP 243
Score = 41.7 bits (98), Expect = 8e-04
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 481 YSGDIMTVNVNLA----GLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFE 536
+S + N NLA G+P + +P G + IG+PVGL G A+D+ LL+ FE
Sbjct: 494 WSNGVWVANGNLAIRHLGVPTVTVPMGVM--ADIGMPVGLTFAGRAYDDNALLRFAAAFE 551
Query: 537 QTLQGCRFVPP 547
T G R + P
Sbjct: 552 AT--GSRRMVP 560
>gnl|CDD|234762 PRK00439, leuD, 3-isopropylmalate dehydratase small subunit;
Reviewed.
Length = 163
Score = 34.4 bits (80), Expect = 0.070
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 138 VLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTE 177
+E+ P F KKVK D IV GK FG GS+ E
Sbjct: 34 CMEDLDPEF----AKKVKPGDIIVAGKN----FGCGSSRE 65
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play
a role in the biomineralisation of teeth. They seem to
regulate formation of crystallites during the secretory
stage of tooth enamel development and are thought to
play a major role in the structural organisation and
mineralisation of developing enamel. The extracellular
matrix of the developing enamel comprises two major
classes of protein: the hydrophobic amelogenins and the
acidic enamelins. Circular dichroism studies of porcine
amelogenin have shown that the protein consists of 3
discrete folding units: the N-terminal region appears
to contain beta-strand structures, while the C-terminal
region displays characteristics of a random coil
conformation. Subsequent studies on the bovine protein
have indicated the amelogenin structure to contain a
repetitive beta-turn segment and a "beta-spiral"
between Gln112 and Leu138, which sequester a (Pro, Leu,
Gln) rich region. The beta-spiral offers a probable
site for interactions with Ca2+ ions. Muatations in the
human amelogenin gene (AMGX) cause X-linked hypoplastic
amelogenesis imperfecta, a disease characterised by
defective enamel. A 9bp deletion in exon 2 of AMGX
results in the loss of codons for Ile5, Leu6, Phe7 and
Ala8, and replacement by a new threonine codon,
disrupting the 16-residue (Met1-Ala16) amelogenin
signal peptide.
Length = 165
Score = 32.1 bits (73), Expect = 0.44
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 5 LHHPPRRLSRFFPANNKPRHFHTKPVLSSSQPVTDQSPSSTSPPESQILSIRH 57
LHH +S+ P + + H PVL + QPV Q P P + + +H
Sbjct: 35 LHHQIIPVSQQHPPTHTLQPHHHIPVLPAQQPVVPQQPLMPVPGQHSMTPTQH 87
>gnl|CDD|233716 TIGR02087, LEUD_arch, 3-isopropylmalate dehydratase, small subunit.
This subfamily is most closely related to the
3-isopropylmalate dehydratase, small subunits which form
TIGR00171. This subfamily includes the members of
TIGR02084 which are gene clustered with other genes of
leucine biosynthesis. The rest of the subfamily includes
mainly archaeal species which exhibit two hits to this
model. In these cases it is possible that one or the
other of the hits does not have a 3-isopropylmalate
dehydratase activity but rather one of the other related
aconitase-like activities.
Length = 154
Score = 31.2 bits (71), Expect = 0.64
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 131 PSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESS 179
P S +E P F KKV+ D IV GK FG GS+ E +
Sbjct: 26 PDELASHAMEGIDPEF----AKKVRPGDVIVAGKN----FGCGSSREQA 66
>gnl|CDD|219969 pfam08687, ASD2, Apx/Shroom domain ASD2. This region is found in
the actin binding protein Shroom which mediates apical
contriction in epithelial cells and is required for
neural tube closure.
Length = 274
Score = 31.2 bits (71), Expect = 1.2
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 23/82 (28%)
Query: 43 SSTSPPESQILSIRHSLLS---------------REVTATQLAETYLSRLKLAEPQLKS- 86
P E L + LL+ RE + YL QL
Sbjct: 185 EDADPEERASLLEKRKLLTRQHEDAKELKEHVDRRERAVRGILARYLP-----AEQLADY 239
Query: 87 --FIHVSNNVLKEAQSIDDKIK 106
F+ + +L E + ++DKIK
Sbjct: 240 QHFVKMKAALLIEQRELEDKIK 261
>gnl|CDD|235326 PRK04976, torD, chaperone protein TorD; Validated.
Length = 202
Score = 29.5 bits (67), Expect = 3.1
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 57 HSLLSREVTATQLAE-------TYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDD 103
SL ++E+ QLA+ ++ + L +EP L + ++ N L DD
Sbjct: 19 SSLFAKELDDEQLAQLQSAEFASFFALLA-SEPPLTASVNELQNALATLTDRDD 71
>gnl|CDD|130079 TIGR01006, polys_exp_MPA1, polysaccharide export protein, MPA1
family, Gram-positive type. This family contains
members from Low GC Gram-positive bacteria; they are
proposed to have a function in the export of complex
polysaccharides [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 226
Score = 29.4 bits (66), Expect = 4.1
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 43 SSTSPPESQILSIRHSLLSREVTATQLAETYLSRL-KLAEPQLKSFIHVSN-NVLKEAQS 100
+ T+P +++++SI S + Q A + L ++A ++ +VS+ L+EA+
Sbjct: 111 TVTNPTDTRLISI-----SVKDKTPQDASKIANSLREVASKKIPKITNVSDVTTLEEAKP 165
Query: 101 ----IDDKIKRNENVGPLAGVLVGV 121
KRN +G L G++V +
Sbjct: 166 ATTPSSPNPKRNLLIGFLLGLVVAL 190
>gnl|CDD|151982 pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor
SCIN. SCIN is released by Staphylococcus aureus to
counteract the host immune defense. The protein binds to
and inhibits C3 convertases on the bacterial surface,
reducing phagocytosis and blocking downstream effector
functions by C3b deposition on its surface. An 18
residue stretch 31-48 is crucial for SCIN activity.
Length = 114
Score = 28.3 bits (63), Expect = 4.3
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 18/115 (15%)
Query: 364 LGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGTY 423
L L +E+ ++ S Y ++ AE+L +L +S
Sbjct: 16 LSTTGIKTLDKNEADASTSYPTSSEYQDKRLAEELKSLLDNSN---------------VN 60
Query: 424 ALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPL 478
L+AG + YYKR + K+ AL + A KI ++ ++ L
Sbjct: 61 KLAAGSLNPYYKRTIMMNHYRAKA---ALKSKNFDKMAEAKVRLEKIYKEIDEIL 112
>gnl|CDD|132312 TIGR03268, methan_mark_3, putative methanogenesis marker protein 3.
A single member of this protein family is found in each
of the first ten complete genome sequences of archaeal
methanogens, and nowhere else. This protein family was
detected by the method of partial phylogenetic profiling
(see Haft, et al., 2006). The functions of proteins in
this family are unknown, but their role is likely one
essential to methanogenesis [Energy metabolism,
Methanogenesis].
Length = 503
Score = 29.7 bits (67), Expect = 4.7
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 10/106 (9%)
Query: 95 LKEAQSIDDKIK---RNENVGPLAGVLVGVKDNICTVD---MPSTAGSRVLENYRPPFDA 148
+ + ++ D +K G G++ GV++ + +T G V+E
Sbjct: 10 VPDGSTVRDALKASDAPYIEGATIGIIKGVQELERETKEYLIKTTKGEVVIELTPNTEAG 69
Query: 149 TAVKKV-KEFDGIVVGKTNLDEFGMGSTT---ESSSFQVTANPWDI 190
++ KE +G + T E G E S WD+
Sbjct: 70 KFWSEIYKELEGKQIRWTTPQEVAFGPFPSDLEPSREPSEYERWDV 115
>gnl|CDD|233381 TIGR01371, met_syn_B12ind,
5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase. This model describes the
cobalamin-independent methionine synthase. A family of
uncharacterized archaeal proteins is homologous to the
C-terminal region of this family. That family is
excluded from this model but, along with this family,
belongs to Pfam model pfam01717 [Amino acid
biosynthesis, Aspartate family].
Length = 750
Score = 29.2 bits (66), Expect = 6.7
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 461 PAAPSAAYK-IGEKKNDP---LAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGL 516
AA AY + E + L Y + L LP + FV G L
Sbjct: 211 LAAFKEAYTELSEALSGLKLLLQTYFDSVGDALEALVSLPVKGIGLDFVHG-----KGTL 265
Query: 517 QMIGAAFDEGKLLKVGHI 534
+++ A F E K+L G I
Sbjct: 266 ELVKAGFPEDKVLSAGVI 283
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 28.9 bits (65), Expect = 8.3
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 145 PFDATAV--KKVKEFDGIVVGKTNLDEFGMGSTTE--------SSSFQVTANPWDISRVP 194
P DA AV KK K G V G+T LD G SS FQ T+N W++ ++P
Sbjct: 181 PKDAYAVWSKKQKSLIGPVGGET-LDCSFCGECIAVCPVGALSSSDFQYTSNAWELKKIP 239
>gnl|CDD|220591 pfam10131, PTPS_related, 6-pyruvoyl-tetrahydropterin synthase
related domain; membrane protein. This domain is found
in various bacterial hypothetical membrane proteins, as
well as in tetratricopeptide TPR_2 repeat protein. The
exact function of the domain has not, as yet, been
established.
Length = 620
Score = 28.9 bits (65), Expect = 8.9
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 411 GSEVKMRILMGTYALSAGYYDAYYKRAQQVRTL---IQKSFKTALDENDILISPAAPSAA 467
G+ I++ AL GYY + R ++ L I+K T E I +A +
Sbjct: 368 GAPTSRNIVLLNTALENGYYGYMFDRNVEMGALTAVIRKDLITKSSETFKAIDQSAAKSG 427
Query: 468 YKIGEKKND 476
Y + + D
Sbjct: 428 YVLYTEIGD 436
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.375
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,654,719
Number of extensions: 2695686
Number of successful extensions: 2465
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2355
Number of HSP's successfully gapped: 74
Length of query: 555
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 453
Effective length of database: 6,413,494
Effective search space: 2905312782
Effective search space used: 2905312782
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.8 bits)