RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 008734
(555 letters)
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 739 bits (1910), Expect = 0.0
Identities = 222/499 (44%), Positives = 326/499 (65%), Gaps = 23/499 (4%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSN-NVLKEAQSIDDKIKRNEN 110
+ ++ + +++ + + + ++ +P +KSF+ + N +K+AQ +D+ +++
Sbjct: 8 VENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQM 67
Query: 111 VGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEF 170
G L G+ +G+KDNI T + +T S++LE + P +++T ++K+ + + +++GK N+DEF
Sbjct: 68 DGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEF 127
Query: 171 GMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCG 230
MG +TE+S F+ T NP+D VPGGSSGGSAAAV+A +SLGSDTGGS+RQPA++CG
Sbjct: 128 AMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCG 187
Query: 231 VVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVL 290
VVG+KPTYGRVSR+GL+A+ASSLD IG +V D I+L AISG D D+TS+
Sbjct: 188 VVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAP----- 242
Query: 291 QISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEEL 350
+ DFTS++ K +KGLKV + +E L GV VK V AV L+ L
Sbjct: 243 -----VDDVDFTSEI-------GKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSL 290
Query: 351 GCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAA-AEDLNALYGDSRAKG 409
G + EVSLP+ G+P+YY++ASSE+SSNLSR+DG+RYG + A L LY SR++G
Sbjct: 291 GAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEG 350
Query: 410 FGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYK 469
FG EVK RI +GT+ALS+GYYDAYYK++Q+VRTLI+ F + D+++ P AP+ A+
Sbjct: 351 FGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFN 410
Query: 470 IGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLL 529
+GE+ +DPL MY+ D++T VNLAGLP + +PCG G P+GLQ IG FDE L
Sbjct: 411 LGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSN----GRPIGLQFIGKPFDEKTLY 466
Query: 530 KVGHIFEQTLQGCRFVPPL 548
+V + +E L
Sbjct: 467 RVAYQYETQYNLHDVYEKL 485
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 725 bits (1874), Expect = 0.0
Identities = 226/490 (46%), Positives = 318/490 (64%), Gaps = 29/490 (5%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSN-NVLKEAQSIDDKIKRNEN 110
+ +R L EV+ ++ E++ R E ++K++I LK+A+S+ ++
Sbjct: 7 LSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKERE----- 61
Query: 111 VGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEF 170
PL G+ + VKDNI +T S++LEN+ P+DAT ++++K+ ++VGKTNLDEF
Sbjct: 62 -LPLFGIPIAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEF 120
Query: 171 GMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCG 230
MGS+TE S+F T NPWD+ RVPGGSSGGSAA+V+ VSLGSDTGGS+RQPASFCG
Sbjct: 121 AMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCG 180
Query: 231 VVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVL 290
V+G+KPTYGRVSRYGL+A+ASSLD IG FG D ++L ISG D D+TS+K
Sbjct: 181 VIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAK----- 235
Query: 291 QISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEEL 350
VP+++ ++ K +KGLK+G+ +E E + VK + LE+
Sbjct: 236 -----VPVPEWSEEV-------KKEVKGLKIGLPKEFFEYELQPQVKEAFENFIKELEKE 283
Query: 351 GCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAA-AEDLNALYGDSRAKG 409
G + EVSLP +P YYI+A SE+SSNL+RYDGVRYG +A +D+ +Y +R +G
Sbjct: 284 GFEIKEVSLPHVKYSIPTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEG 343
Query: 410 FGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYK 469
FG EVK RI++GT+ALSAGYYDAYY +AQ+VR LI F A +E D++ SP P+ +K
Sbjct: 344 FGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFK 403
Query: 470 IGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLL 529
GE+ +P+ MY DI+TV NLAGLPA+ +P + + GLPVG Q+IG +DE LL
Sbjct: 404 FGERLENPIEMYLSDILTVPANLAGLPAISIPIAWKD----GLPVGGQLIGKHWDETTLL 459
Query: 530 KVGHIFEQTL 539
++ +++EQ
Sbjct: 460 QISYLWEQKF 469
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 720 bits (1862), Expect = 0.0
Identities = 233/497 (46%), Positives = 311/497 (62%), Gaps = 32/497 (6%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENV 111
IR + EV+ ++A+ YL R++ +P L +F+ ++ +L+EA+++D +
Sbjct: 3 AHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVDPGL------ 56
Query: 112 GPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFG 171
PLAG++V VKDNI T + +TAGSR+LEN+ PP++ATAV ++K +V+GKTNLDEFG
Sbjct: 57 -PLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFG 115
Query: 172 MGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGV 231
MGS+TE S+F T NP+D RVPGGSSGGSAAA++A ++LGSDTGGSVRQPA+FCGV
Sbjct: 116 MGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGV 175
Query: 232 VGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQ 291
GLKPTYGRVSR+GLIAYASSLD IG SV D +L+ A +G D LDATS
Sbjct: 176 YGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDL----- 230
Query: 292 ISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELG 351
P F L PL L++GV+RE L G GV+ + A+ ELG
Sbjct: 231 ------PPRFQEAL-------EGPLPPLRLGVVREALA-GNSPGVERALEEALKVFRELG 276
Query: 352 CTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFG 411
++ EVS PS L AYYILA +E+SSNL+RYDG YG +AA E++ + +RA FG
Sbjct: 277 LSVREVSWPSLPQALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRA-LFG 335
Query: 412 SEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIG 471
EVK R+L+GT+ LS+GYY+AYY RAQ R ++ + E D+L+ P P A+ G
Sbjct: 336 LEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFG 395
Query: 472 EKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKV 531
+ DPLAMY D+ TV NL GLPAL P GF LPVGLQ++ ++ +LL+
Sbjct: 396 A-RRDPLAMYREDLYTVGANLTGLPALSFPAGFEG----HLPVGLQLLAPWGEDERLLRA 450
Query: 532 GHIFEQTLQGCRFVPPL 548
FE+ PL
Sbjct: 451 ALAFEEATARAHLKAPL 467
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 712 bits (1840), Expect = 0.0
Identities = 216/487 (44%), Positives = 290/487 (59%), Gaps = 37/487 (7%)
Query: 53 LSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENV 111
L+I L E +L + L +K +P +K+FI V N +++
Sbjct: 10 LTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKK------------- 56
Query: 112 GPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFG 171
G G+ V +KDNI T+ M +T SR+LENY FDAT VKK+KE +VVGK NLDEF
Sbjct: 57 GKFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFA 116
Query: 172 MGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGV 231
MGS+TE S+F T NPWD+ RVPGGSSGGSAAAVSA V +LGSDTGGSVRQPAS CGV
Sbjct: 117 MGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGV 176
Query: 232 VGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQ 291
VG KPTYG VSRYGL+A+ASSLD IG +V D IL+ ISG D DAT+ +
Sbjct: 177 VGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNR----- 231
Query: 292 ISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELG 351
DF S++ + + G+K V E E+ ++ GV A+ LE LG
Sbjct: 232 ------KVDFLSEI-------EEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLG 278
Query: 352 CTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFG 411
+ V +P + YY++A +E+SSNL+R+DGV+YG + + L +Y +R GFG
Sbjct: 279 AKVERVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFG 338
Query: 412 SEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIG 471
EV+ RI++GT+ LSA YY+AY+ +A +VR I L + D +++P +P A+KIG
Sbjct: 339 EEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIG 398
Query: 472 EKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKV 531
E DPL Y DI T+ NLAGLPA+ +P GF LPVG+Q+IG F +GK+ ++
Sbjct: 399 E-IKDPLTYYLMDIFTIPANLAGLPAISVPFGFSN----NLPVGVQVIGRRFADGKVFRI 453
Query: 532 GHIFEQT 538
E+
Sbjct: 454 ARAIEKN 460
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 642 bits (1657), Expect = 0.0
Identities = 138/521 (26%), Positives = 219/521 (42%), Gaps = 41/521 (7%)
Query: 53 LSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQS-------IDDKI 105
+++ + A + + S + S
Sbjct: 20 ITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSREHAVPSASENPLSAWYVTTS 79
Query: 106 KRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKT 165
+ G L G V +KDN+ +P GSR +E + P DAT V ++ V GK
Sbjct: 80 IPPTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKA 139
Query: 166 NLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQP 225
++ ++ + + NPWD R GGSSGGSAA V+ ++G D GGS+R P
Sbjct: 140 VCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIP 199
Query: 226 ASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSK 285
A+FCGVVG KPT+G V G ++D +G +V D ++LS I+G D D +
Sbjct: 200 AAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQAD 259
Query: 286 QVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVD-SGVKSTVLGAV 344
V E D+ S L + GL++G++RE + V V V A
Sbjct: 260 SV---------EAGDYLSTL-------DSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAA 303
Query: 345 SHLEELGCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAE------DL 398
L E+GCT+ EV++P + ++A+ + + DG YG A
Sbjct: 304 HSLTEIGCTVEEVNIPWHLHAFHIWNVIATDGGAYQM--LDGNGYGMNAEGLYDPELMAH 361
Query: 399 NALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDIL 458
A A VK+ L G + ++ A Y +A+ + L + ++ TAL + D+L
Sbjct: 362 FASRRIQHADALSETVKLVALTGHHGITT-LGGASYGKARNLVPLARAAYDTALRQFDVL 420
Query: 459 ISPAAPSAAYKIGEKKNDPLAMYSGDIM----TVNVNLAGLPALVLPCGFVEGGPIGLPV 514
+ P P A ++ K D + + T ++ G P+L +P G V GLPV
Sbjct: 421 VMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVN----GLPV 476
Query: 515 GLQMIGAAFDEGKLLKVGHIFEQTLQGCRFVPPLIADGIPQ 555
G+ + G FD+ +L+VG FE+ ++ PQ
Sbjct: 477 GMMITGRHFDDATVLRVGRAFEKLRGAFPTPAERASNSAPQ 517
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 610 bits (1575), Expect = 0.0
Identities = 139/494 (28%), Positives = 212/494 (42%), Gaps = 69/494 (13%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSN-NVLKEAQSIDDKIKRNEN 110
+L + L + T L E L R K + + ++ KEA ++ ++++R +
Sbjct: 3 LLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQV 61
Query: 111 VGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEF 170
GPL G+ + VKD MP+ AG++ P +A AV++++E ++ KTN+ E
Sbjct: 62 RGPLHGLPLTVKDLFPVKGMPTRAGTKAPLPPLP-EEARAVRRLREAGALLFAKTNMHEI 120
Query: 171 GMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCG 230
+G T E+ N D SR GGSSGGSA AV+ + SLG+DTGGS+R PA F G
Sbjct: 121 ALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNG 180
Query: 231 VVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVL 290
VVG KP+YGRVS G + + S D G SV D L ++G
Sbjct: 181 VVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGESIPL---------- 230
Query: 291 QISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEEL 350
+ ++ GV + LE + V+ + L L
Sbjct: 231 -----------------------EGVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLPAL 267
Query: 351 GCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGF 410
+ EVSLP + E + L RY+ R + +GF
Sbjct: 268 RAEVREVSLP----------LEGVYEVYTRLVRYEAARIHEK---------ALKEHPEGF 308
Query: 411 GSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKI 470
+V+ +L G Y DA R ++ AL D L+ P P A +
Sbjct: 309 SPQVREALLAGLALTEKDYRDAVA-----EREALRLELVKALRGVDALLLPVQPLPAPPL 363
Query: 471 GEKKNDPLAMYSGD-----IMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDE 525
G ++ + + G +T+ +L G+P L LP VE G+PVGLQ++GA ++
Sbjct: 364 GTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAKVE----GMPVGLQVVGAYGED 419
Query: 526 GKLLKVGHIFEQTL 539
GK+L +G E L
Sbjct: 420 GKVLALGGWLEARL 433
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 592 bits (1529), Expect = 0.0
Identities = 158/518 (30%), Positives = 245/518 (47%), Gaps = 47/518 (9%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSR---LKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRN 108
+ ++ + + E+ +T L + YL R L P+L++ I ++ + LKEA D + +
Sbjct: 13 VADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRERRDG 72
Query: 109 ENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLD 168
GPL G+ + +KDNI M ++AGS L+ +RP DA V+++++ +V+GKTNL
Sbjct: 73 RLRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPD-DAYLVRRLRDAGAVVLGKTNLS 131
Query: 169 EFGMGSTTE-----SSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVR 223
E+ + S+ T NP+ IS P GSS GSA AV+A V++G++T GS+
Sbjct: 132 EWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIV 191
Query: 224 QPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATS 283
PA+ GVVGLKPT G VSR G+I + S D G SVAD +L+AI+G D D +
Sbjct: 192 CPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPAT 251
Query: 284 SKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGA 343
+ + V D+T A L+ + L+G ++G+++ L G+ + A
Sbjct: 252 ATM-------PGRAVYDYT------ARLDPQGLRGKRIGLLQTPL--LKYRGMPPLIEQA 296
Query: 344 VSHLEELGCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDL---NA 400
+ L G + V LP+ A L E + L RY + DL N
Sbjct: 297 ATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQ 356
Query: 401 LYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQ-VRTLIQKS---FKTALDEND 456
+ FG E L+ +AG D Y RA+ R L A + D
Sbjct: 357 AHSKQELGLFGQE-----LLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLD 411
Query: 457 ILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGL 516
L++P A E + P YS +AG P+L +P G ++ GLPVGL
Sbjct: 412 ALVAPTTGVAWPIRSEGDDFPGESYS------AAAVAGYPSLTVPMGQID----GLPVGL 461
Query: 517 QMIGAAFDEGKLLKVGHIFEQTLQGCRFVPPLIADGIP 554
+G A+ E KL+++ + +EQ + R P D +
Sbjct: 462 LFMGTAWSEPKLIEMAYAYEQRTRA-RRPPHFDTDALI 498
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 563 bits (1453), Expect = 0.0
Identities = 110/490 (22%), Positives = 190/490 (38%), Gaps = 85/490 (17%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENV 111
+ ++ + + E++ + ++ E ++ +F+ DK R +
Sbjct: 4 LADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRH------------DKSARAQAS 51
Query: 112 GPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFG 171
GPL G+ VG+KD I T +MP+ GS + ++P DA V +K ++GKT F
Sbjct: 52 GPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 172 MGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGV 231
T T NP + PGG+S GSAAAV A ++LG+ TGGSV +PA++CG
Sbjct: 112 SRDPTA------TLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 232 VGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQ 291
+KP++ + G+ Y+ +LD +G FG+ D L A++G
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIV-------- 217
Query: 292 ISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELG 351
P K ++GV+R+ V+ + + A+ E G
Sbjct: 218 -----------------------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAG 254
Query: 352 CTLSEVSLPS-FSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGF 410
++ + LP + I+ E+ L+ +
Sbjct: 255 ASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFSEHHDE------------------- 295
Query: 411 GSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPS-AAYK 469
+ + L T L+ YD A+++ ++ + D+L++ +AP A K
Sbjct: 296 IAPMLRASLDATVGLTPKEYD----EARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAK 351
Query: 470 IGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLL 529
DP L G P + +P V GLP+G+Q+I ++ L
Sbjct: 352 ALASTGDPRYNRL-------WTLMGNPCVNVPVLKVG----GLPIGVQVIARFGNDAHAL 400
Query: 530 KVGHIFEQTL 539
E L
Sbjct: 401 ATAWFLEDAL 410
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 406 bits (1045), Expect = e-137
Identities = 132/518 (25%), Positives = 211/518 (40%), Gaps = 69/518 (13%)
Query: 61 SREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLV 119
S E++ T+L E ++ ++ P++ + I +E++ GP AGV
Sbjct: 19 SGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELAS---------GPFAGVPY 69
Query: 120 GVKD-NICTVDMPSTAGSRVLEN--YRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTT 176
+KD + + +T+ + ++ YR DA V++++ +++GKTN E G TT
Sbjct: 70 LLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTT 129
Query: 177 ESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKP 236
E ++ T NPW++ R GGSSGGS AAV+A V+ G+D G+VR PAS CGVVGLKP
Sbjct: 130 EPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKP 189
Query: 237 TYGRVSRYGLIAYASS---LDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQIS 293
T GR+S L+ + + G F SV D LL +SGH D
Sbjct: 190 TRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTF----------C 239
Query: 294 VSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENG--VDSGVKSTVLGAVSHLEELG 351
+ + S+ L+VGV+ +D + GA + L LG
Sbjct: 240 APTASRPYAQGI-------SENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALG 292
Query: 352 CTLSEVSLPSFSLG--LPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKG 409
+++ + L Y + + + R +G G +D+ +
Sbjct: 293 HDVNDAYPEALGDRSFLKDYSTICDVAIAREIER-NGELIGRPLTEDDV---------EW 342
Query: 410 FGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYK 469
E+ R T A D A +V + + D+LI P +
Sbjct: 343 TSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGW-------DLLILPTVTRQTPE 395
Query: 470 IGE-------KKNDPLAMYSGDIM-----TVNVNLAGLPALVLPCGFVEGGPIGLPVGLQ 517
IGE + + + TV N++G PA+ LP G G+P+G+Q
Sbjct: 396 IGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSD---GMPIGVQ 452
Query: 518 MIGAAFDEGKLLKVGHIFEQTLQGCRFVPPLIADGIPQ 555
++ A E LL+V E L P L+
Sbjct: 453 IVAAYGREDLLLQVAAQLEGALPWVARRPQLLNPSRKI 490
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 338 bits (868), Expect = e-109
Identities = 106/559 (18%), Positives = 182/559 (32%), Gaps = 74/559 (13%)
Query: 31 LSSSQPVTDQSPSSTSPPESQIL------SIRHSLLSREVTATQLAETYLSRLKLAEPQL 84
L + + +S+ L + L S E++ + TYL +
Sbjct: 46 LETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGT 105
Query: 85 KSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRP 144
L + + ++ + G L GV V +K+ ST G + E
Sbjct: 106 NCVTSY----LTDC---ETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPS 158
Query: 145 PFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAA 204
D V+ +K + TN+ + + F T NPW S+ PGGSSGG A
Sbjct: 159 ESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGAL 218
Query: 205 VSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYA----SSLDVIGCFG 260
+ + + LG+D GGS+R P++FCG+ GLKPT R+S+ GL + +G
Sbjct: 219 IGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMA 278
Query: 261 SSVADTGILLSAISGHDRLDATSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLK 320
V + L A+ + V + +EV + + L+
Sbjct: 279 RDVESLALCLKALLCEHLFTLDPT----VPPLPFREEVY--------------RSSRPLR 320
Query: 321 VGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSFSLGLPAYYI-LASSESSS 379
VG ++ ++ LE G TL + L S+
Sbjct: 321 VGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGGLFSDGGR 380
Query: 380 NLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRIL--MGTYALSAGYYDAY-YKR 436
+ + + + + + L S K S + + + + + A +
Sbjct: 381 SFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWK 440
Query: 437 AQQVRTLIQKSFKTALDEN--DILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAG 494
Q + ++S D+L++P A N P T+ N
Sbjct: 441 LQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPAL-----DLNTPGRATGAVSYTMLYNCLD 495
Query: 495 LPALVLPCGFVEG--------------------------GPIGLPVGLQMIGAAFDEGKL 528
PA V+P V +GLPV +Q + + E
Sbjct: 496 FPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELC 555
Query: 529 LKVGHIFEQTLQGCRFVPP 547
L+ EQ + P
Sbjct: 556 LRFMREVEQLMTP--QKQP 572
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 74.3 bits (182), Expect = 6e-14
Identities = 101/586 (17%), Positives = 189/586 (32%), Gaps = 157/586 (26%)
Query: 54 SIRHSLL---SREVTATQLAETYLSRL-----KLA---EPQ-----LKSFI-HVSN---- 92
S+ H LL + A+QL E + L A EP + F+ +VS+
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP 74
Query: 93 -------NVLKEA-QSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRP 144
VL ++ ++ LA L+ D +++NY
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT------TLVKTKELIKNY-- 126
Query: 145 PFDATAVKKVKE--------FDGIVVGKTNL-DEF-GMGST----TESSSFQVTANPW-- 188
A + K F + G L F G G+T E T +
Sbjct: 127 -ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 189 DISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIA 248
D+ + + + V + G + + P++ P + L++
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN-------TP-----DKDYLLS 233
Query: 249 YASSLDVIG-----CF-------GSSVADTGILLSAISGHDRLDATSSKQVRV-LQISVS 295
S +IG + G + + L +GH S+ + + I+ +
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH-------SQGLVTAVAIAET 286
Query: 296 QEVPDFTSQLISA-ALL--------ESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSH 346
F + A +L E+ P L ++ ++LEN GV S +L ++S+
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN--EGVPSPML-SISN 343
Query: 347 L--EELGCTLSEV--SLPS---FSLGL---PAYYILASSESSSNLSRYDGVRYGNQAAAE 396
L E++ +++ LP+ + L +++ S L YG
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS--L-------YGLNLTLR 394
Query: 397 DLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDEND 456
A G +++ SE K++ +++ ++ A + L +N+
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL-------INKDLVKNN 447
Query: 457 ILISPAA---PSAAYKIGEKKNDPLAMYSGD--------IMTVNVN---LAGLPAL-VLP 501
+ + P Y + + L + SG I+ + V A +L
Sbjct: 448 VSFNAKDIQIP--VYDTFDGSD--LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 502 CGFVEGGPIGLPV---------GLQMI-GAAFDEGKLLKVGHIFEQ 537
G GG GL V G+++I D G F+Q
Sbjct: 504 FG--PGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG--FKQ 545
Score = 73.2 bits (179), Expect = 1e-13
Identities = 96/607 (15%), Positives = 187/607 (30%), Gaps = 153/607 (25%)
Query: 4 TLHHPPRRLSRFFPANNKPRHFHT---KPVLSSSQPVTDQSPSSTSPPESQILSIRHSLL 60
TL H P + F + + P + ++ P + L+
Sbjct: 10 TLSHGSLEHVLLVPTAS---FFIASQLQEQFNKILPEPTEGFAADDEPTTPA-----ELV 61
Query: 61 SREVTATQLAETYLSRL-KLAEP-QLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVL 118
+ +L + L EP ++ F V N L E ++ ++ LA L
Sbjct: 62 GK----------FLGYVSSLVEPSKVGQFDQVLNLCLTE---FENCYLEGNDIHALAAKL 108
Query: 119 VGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKE--------FDGIVVGKTNL-DE 169
+ D +++NY A + K F + G L
Sbjct: 109 LQENDT------TLVKTKELIKNY---ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 170 F-GMGST----TESSSFQVTANPW--DISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSV 222
F G G+T E T + D+ + + + V + G + +
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 223 RQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIG-----CF-------GSSVADTGILL 270
P++ P + L++ S +IG + G + + L
Sbjct: 220 ENPSN-------TP-----DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 271 SAISGHDRLDATSSKQVRV-LQISVSQEVPDFTSQLISA-ALL--------ESKPLKGLK 320
+GH S+ + + I+ + F + A +L E+ P L
Sbjct: 268 KGATGH-------SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 321 VGVIRETLENGVDSGVKSTVLGAVSHL--EELGCTLSEV--SLPS---FSLGL---PAYY 370
++ ++LEN GV S +L ++S+L E++ +++ LP+ + L
Sbjct: 321 PSILEDSLENN--EGVPSPML-SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 371 ILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGTYALSAGYY 430
+++ S L YG A G +++ SE K++ +++ ++
Sbjct: 378 VVSGPPQS--L-------YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 431 DAYYKRAQQVRTLIQKSFKTALDENDILISPAA---PSAAYKIGEKKNDPLAMYSGDIMT 487
A + L +N++ + P Y + + L + SG I
Sbjct: 429 SHLLVPASDL-------INKDLVKNNVSFNAKDIQIP--VYDTFDGSD--LRVLSGSI-- 475
Query: 488 VNVNLAGLPALVLPCGFVEGGPIGLPV---GLQMIGA----AFDEGKLLKVGHIFEQTLQ 540
+V C PV A F G +G + +
Sbjct: 476 -------SERIV-DCIIRL------PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 541 G--CRFV 545
G R +
Sbjct: 522 GTGVRVI 528
Score = 46.2 bits (109), Expect = 3e-05
Identities = 80/505 (15%), Positives = 143/505 (28%), Gaps = 153/505 (30%)
Query: 16 FPANNKPRHFHTKPVLSS---SQPVTDQSPSSTSPPESQILSIRHSLLSREVTA--TQL- 69
N TK ++ + ++ + + S S L R V QL
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN----------SALFRAVGEGNAQLV 157
Query: 70 --------AETYLSRL----KLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVG-PLAG 116
+ Y L + + I S L E ++ G +
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 117 VLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTT 176
L + PS P D + I V
Sbjct: 218 WL----------ENPSN---------TPDKDYLLSIPI-SCPLIGV-------------I 244
Query: 177 ESSSFQVTA-----NPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPAS---- 227
+ + + VTA P ++ G++G S V+A ++ +D+ S
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV--AIAE-TDSWESFFVSVRKAIT 301
Query: 228 ---FCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSS 284
F GV + Y S SL+ V + +L +IS +
Sbjct: 302 VLFFIGVRCYE-AYPNTSL-PPSILEDSLEN----NEGVP-SPML--SISNLTQ------ 346
Query: 285 KQVRVLQISVSQEVPDFTSQLISAALLESK--------P--LKGLKVGVIRETLENGVD- 333
+QV+ + +P + + +L+ P L GL + + + +G+D
Sbjct: 347 EQVQDYVNKTNSHLP--AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 334 -----SGVK---------------STVLGAVSHLEELGCTLSEVSLPSFSLGLPAYYILA 373
S K S +L S L + VS + + +P Y
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY---- 460
Query: 374 SSESSSNLSRYDG--------------VRYGNQAAAEDLNAL-YGDSRAKGFGSEVK--- 415
+ S+L G V++ + + L +G A G G
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 416 ----MRILMGTYALSAGYYDAY-YK 435
+R+++ L D Y +K
Sbjct: 521 DGTGVRVIVAG-TLDINPDDDYGFK 544
Score = 30.4 bits (68), Expect = 2.1
Identities = 46/317 (14%), Positives = 88/317 (27%), Gaps = 106/317 (33%)
Query: 23 RHFHTKPVLSSSQPVTDQSPSST---SPPESQILSIRHSLLSREVTATQLAETYLSRLKL 79
HF S V + + T + + + RE + + ET +
Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI--------RENYSAMIFETIVDGKLK 1702
Query: 80 AEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLV-----------GVKDNICTV 128
E K S + ++ + + P A L+ G+ T
Sbjct: 1703 TEKIFKEINEHSTSYTFRSE--KGLLSATQFTQP-ALTLMEKAAFEDLKSKGLIPADATF 1759
Query: 129 DMPSTAG------------SRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTT 176
AG + V+ ++ V+ +V F G T
Sbjct: 1760 -----AGHSLGEYAALASLADVM-----SIES-LVE-------VV--------FYRGMTM 1793
Query: 177 ESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKP 236
+ A P R G S A++ + S + +++ VG K
Sbjct: 1794 Q------VAVP----RDELGRSNYGMIAINPGRVAASFSQE---ALQY---VVERVG-KR 1836
Query: 237 TYGRVSRYGLIA--------YASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVR 288
T V I Y V G A L ++ + L+ +++
Sbjct: 1837 TGWLVE----IVNYNVENQQY-----VAA--GDLRA-----LDTVT--NVLNFIKLQKID 1878
Query: 289 VLQISVSQEVPDFTSQL 305
++++ S + + L
Sbjct: 1879 IIELQKSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 8e-06
Identities = 68/440 (15%), Positives = 126/440 (28%), Gaps = 133/440 (30%)
Query: 138 VLENYRPPF----DATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRV 193
+L + F D K V++ ++ K +D + + +S
Sbjct: 21 ILSVFEDAFVDNFD---CKDVQDMPKSILSKEEIDH-------------IIMSKDAVSGT 64
Query: 194 PGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSL 253
+ +L S V++ F V L+ Y + S +
Sbjct: 65 --------------LRLFWTLLSKQEEMVQK---FVEEV-LRINYKFL--------MSPI 98
Query: 254 DVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQISVSQEVPDFTSQLISAALLES 313
+ + I DRL + + +VS+ P +L A LLE
Sbjct: 99 KT-----EQRQPSMMTRMYIEQRDRLYNDNQV---FAKYNVSRLQP--YLKLRQA-LLEL 147
Query: 314 KPLKGLKV-GVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSFSLGLPAYYIL 372
+P K + + GV+ G SG K+ V V ++ C + +++
Sbjct: 148 RPAKNVLIDGVL------G--SG-KTWVALDVCLSYKVQCK--------MDFKI--FWL- 187
Query: 373 ASSESSSNLSRYDGVRYGNQAAAEDLNALY------GDSRAKGFGSEVKMRILMGTYALS 426
NL + E L L SR+ S +K+RI L
Sbjct: 188 -------NLKNCNSPE----TVLEMLQKLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELR 235
Query: 427 AGYYDAYYKRA-------QQVRTLIQKSF----KTALDENDILISPAAPSAAYKIGEKKN 475
Y+ Q + +F K L ++ +A +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 476 DPLAMYSGDIMT-----VNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLL- 529
+ + ++ + ++ LP V P L +I + +G
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREV--LT-------TNPRRLSIIAESIRDGLATW 344
Query: 530 ---------KVGHIFEQTLQ 540
K+ I E +L
Sbjct: 345 DNWKHVNCDKLTTIIESSLN 364
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.75
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 20/47 (42%)
Query: 285 KQ-VRVLQISVSQEVPDFTSQLISA-ALLESKPLKGLKVGVIRETLE 329
KQ ++ LQ S+ D SA AL I+ T+E
Sbjct: 19 KQALKKLQASLKLYADD------SAPAL------------AIKATME 47
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.0 bits (70), Expect = 1.3
Identities = 28/162 (17%), Positives = 49/162 (30%), Gaps = 32/162 (19%)
Query: 334 SGVKSTV---LGAVSHLEELGCTLSEVSLPSFSLG-LPAYYILASSESSSNLSRYDGVRY 389
K GA G + G +P + L +++ V Y
Sbjct: 1376 VFQKFLTGHPKGAAGAWMMNGALQI------LNSGIIPG--NRNADNVDKILEQFEYVLY 1427
Query: 390 GNQAA-AEDLN-ALYGDSRAKGFGSE------VKMRILMGTYALSAGYYDAYYKRAQQVR 441
++ + + + GFG + V L G A++ Y+ Y +
Sbjct: 1428 PSKTLKTDGVRAVS---ITSFGFGQKGGQAIVVHPDYLYG--AITEDRYNEYVAKVSARE 1482
Query: 442 TLIQKSFKTALDENDIL-ISPAAPSAAYKIGEKKN---DPLA 479
K F + N + AP Y +++ DPLA
Sbjct: 1483 KSAYKFFHNGMIYNKLFVSKEHAP---YTDELEEDVYLDPLA 1521
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA);
alpha-beta protein, structural genomics, PSI-2, protein
STRU initiative; 2.31A {Archaeoglobus fulgidus}
Length = 208
Score = 29.2 bits (66), Expect = 3.0
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 77 LKLAEPQLKSFIHVSNNVLKEAQSIDDKIK----RNENVGPLAGVLVGVK--DNICTV-- 128
L+ P F+ + E S + + ++ VG +AG+ ++ +
Sbjct: 33 LEKYSPFQTVFV-CRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIHAALRHFGSCVVAAI 91
Query: 129 DMP 131
DMP
Sbjct: 92 DMP 94
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 28.7 bits (63), Expect = 3.8
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 3/99 (3%)
Query: 12 LSRFFPANNKPRHFHTKPVLSSSQPVTDQSP---SSTSPPESQILSIRHSLLSREVTATQ 68
S P+ P H + SS P +P + S S L+ + E + +
Sbjct: 15 FSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNHSEPLSAE 74
Query: 69 LAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKR 107
LA L A + V+ + + + + R
Sbjct: 75 LASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNR 113
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A;
putative protein, molybdenum cofactor, structural G
NPPSFA; 1.61A {Aquifex aeolicus}
Length = 201
Score = 28.0 bits (63), Expect = 6.5
Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 13/65 (20%)
Query: 77 LKLAEPQLKSFIHVSNNVLKEAQS----IDDKIKRNENVGPLAGVLVGVKDN------IC 126
+ A+ K V+ + K + + D+ + + G+ +K +
Sbjct: 47 YETAKSVFKEVYIVAKDREKFSFLNAPVVLDEFE---ESASIIGLYTALKHAKEENVFVL 103
Query: 127 TVDMP 131
+ D+P
Sbjct: 104 SGDLP 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.375
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,145,502
Number of extensions: 498775
Number of successful extensions: 1049
Number of sequences better than 10.0: 1
Number of HSP's gapped: 971
Number of HSP's successfully gapped: 22
Length of query: 555
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 457
Effective length of database: 3,965,535
Effective search space: 1812249495
Effective search space used: 1812249495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.1 bits)