RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 008734
(555 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 429 bits (1105), Expect = e-147
Identities = 222/499 (44%), Positives = 325/499 (65%), Gaps = 23/499 (4%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNEN 110
+ ++ + +++ + + + ++ +P +KSF+ + N +K+AQ +D+ +++
Sbjct: 8 VENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQM 67
Query: 111 VGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEF 170
G L G+ +G+KDNI T + +T S++LE + P +++T ++K+ + + +++GK N+DEF
Sbjct: 68 DGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEF 127
Query: 171 GMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCG 230
MG +TE+S F+ T NP+D VPGGSSGGSAAAV+A +SLGSDTGGS+RQPA++CG
Sbjct: 128 AMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCG 187
Query: 231 VVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVL 290
VVG+KPTYGRVSR+GL+A+ASSLD IG +V D I+L AISG D D+T
Sbjct: 188 VVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDST-------- 239
Query: 291 QISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEEL 350
S + DFTS++ K +KGLKV + +E L GV VK V AV L+ L
Sbjct: 240 --SAPVDDVDFTSEI-------GKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSL 290
Query: 351 GCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAA-AEDLNALYGDSRAKG 409
G + EVSLP+ G+P+YY++ASSE+SSNLSR+DG+RYG + A L LY SR++G
Sbjct: 291 GAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEG 350
Query: 410 FGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYK 469
FG EVK RI +GT+ALS+GYYDAYYK++Q+VRTLI+ F + D+++ P AP+ A+
Sbjct: 351 FGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFN 410
Query: 470 IGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLL 529
+GE+ +DPL MY+ D++T VNLAGLP + +PCG G P+GLQ IG FDE L
Sbjct: 411 LGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSN----GRPIGLQFIGKPFDEKTLY 466
Query: 530 KVGHIFEQTLQGCRFVPPL 548
+V + +E L
Sbjct: 467 RVAYQYETQYNLHDVYEKL 485
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 386 bits (991), Expect = e-130
Identities = 215/502 (42%), Positives = 290/502 (57%), Gaps = 39/502 (7%)
Query: 53 LSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVG 112
L+I L E +L + L +K +P +K+FI V +E S++ K G
Sbjct: 9 LTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISV-----RENVSVEKK-------G 56
Query: 113 PLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGM 172
G+ V +KDNI T+ M +T SR+LENY FDAT VKK+KE +VVGK NLDEF M
Sbjct: 57 KFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAM 116
Query: 173 GSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVV 232
GS+TE S+F T NPWD+ RVPGGSSGGSAAAVSA V +LGSDTGGSVRQPAS CGVV
Sbjct: 117 GSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVV 176
Query: 233 GLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQI 292
G KPTYG VSRYGL+A+ASSLD IG +V D IL+ ISG D
Sbjct: 177 GYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDE-------------- 222
Query: 293 SVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGC 352
++ + + + G+K V E E+ ++ GV A+ LE LG
Sbjct: 223 ----NDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGA 278
Query: 353 TLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGS 412
+ V +P + YY++A +E+SSNL+R+DGV+YG + + L +Y +R GFG
Sbjct: 279 KVERVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGE 338
Query: 413 EVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGE 472
EV+ RI++GT+ LSA YY+AY+ +A +VR I L + D +++P +P A+KIGE
Sbjct: 339 EVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGE 398
Query: 473 KKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVG 532
DPL Y DI T+ NLAGLPA+ +P GF LPVG+Q+IG F +GK+ ++
Sbjct: 399 -IKDPLTYYLMDIFTIPANLAGLPAISVPFGFSN----NLPVGVQVIGRRFADGKVFRIA 453
Query: 533 HIFEQTL----QGCRFVPPLIA 550
E+ G +P + A
Sbjct: 454 RAIEKNSPYNENGMFPLPEVKA 475
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 251 bits (640), Expect = 1e-77
Identities = 151/511 (29%), Positives = 243/511 (47%), Gaps = 42/511 (8%)
Query: 49 ESQILSIRHSLLSREVTATQLAETYLSRLKLAE---PQLKSFIHVSNNVLKEAQSIDDKI 105
E+ + ++ + + E+ +T L + YL R+ + P+L++ I ++ + LKEA D +
Sbjct: 6 ETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRER 65
Query: 106 KRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKT 165
+ GPL G+ + +KDNI M ++AGS L P DA V+++++ +V+GKT
Sbjct: 66 RDGRLRGPLHGIPLLLKDNINAAPMATSAGSLAL-QGFRPDDAYLVRRLRDAGAVVLGKT 124
Query: 166 NLDEFGMGS-----TTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGG 220
NL E+ + S+ T NP+ IS P GSS GSA AV+A V++G++T G
Sbjct: 125 NLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDG 184
Query: 221 SVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLD 280
S+ PA+ GVVGLKPT G VSR G+I + S D G SVAD +L+AI+G D D
Sbjct: 185 SIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDAD 244
Query: 281 ATSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTV 340
++ + V D+T++ L+ + L+G ++G+++ L G+ +
Sbjct: 245 PATATMPG-------RAVYDYTAR------LDPQGLRGKRIGLLQTPL--LKYRGMPPLI 289
Query: 341 LGAVSHLEELGCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNA 400
A + L G + V LP+ A L E + L RY + DL A
Sbjct: 290 EQAATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIA 349
Query: 401 LYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQK----SFKTALDEND 456
+ + + L+ +AG D Y RA+ + A + D
Sbjct: 350 FNQAHSKQEL--GLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLD 407
Query: 457 ILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGL 516
L++P A E + P YS +AG P+L +P G ++ GLPVGL
Sbjct: 408 ALVAPTTGVAWPIRSEGDDFPGESYS------AAAVAGYPSLTVPMGQID----GLPVGL 457
Query: 517 QMIGAAFDEGKLLKVGHIFEQTLQGCRFVPP 547
+G A+ E KL+++ + +EQ + R PP
Sbjct: 458 LFMGTAWSEPKLIEMAYAYEQRTRARR--PP 486
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 242 bits (617), Expect = 1e-73
Identities = 105/527 (19%), Positives = 176/527 (33%), Gaps = 72/527 (13%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENV 111
+L + L S E++ + TYL + L + + ++ +
Sbjct: 43 LLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSY----LTDC---ETQLSQAPRQ 95
Query: 112 GPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFG 171
G L GV V +K+ ST G + E D V+ +K + TN+ +
Sbjct: 96 GLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 155
Query: 172 MGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGV 231
+ + F T NPW S+ PGGSSGG A + + + LG+D GGS+R P++FCG+
Sbjct: 156 LSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 215
Query: 232 VGLKPTYGRVSRYGLIA----YASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQV 287
GLKPT R+S+ GL + +G V + L A+
Sbjct: 216 CGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFT------- 268
Query: 288 RVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHL 347
D T + + + L+VG ++ ++ L
Sbjct: 269 -----------LDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRL 317
Query: 348 EELGCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRA 407
E G TL + L +L++ S+ R + L L R
Sbjct: 318 EAAGHTLIPFLPNNIPYALE---VLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRL 374
Query: 408 KGFGSEVKMRILMGTYALSAGYYDAY-------YKRAQQVRTLIQKSFKTALDEN--DIL 458
+ + +L + A + ++ + Q + ++S D+L
Sbjct: 375 PSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVL 434
Query: 459 ISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEG----------- 507
++P A N P TV N PA V+P V
Sbjct: 435 LTPMLGPAL-----DLNTPGRATGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKG 489
Query: 508 ---------------GPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTL 539
+GLPV +Q + + E L+ EQ +
Sbjct: 490 YFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLM 536
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 198 bits (502), Expect = 3e-58
Identities = 103/488 (21%), Positives = 183/488 (37%), Gaps = 81/488 (16%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENV 111
+ ++ + + E++ + ++ E ++ +F+ DK R +
Sbjct: 4 LADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRH------------DKSARAQAS 51
Query: 112 GPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFG 171
GPL G+ VG+KD I T +MP+ GS + ++P DA V +K ++GKT F
Sbjct: 52 GPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 172 MGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGV 231
T + + T + GGSS GSAAAV A ++LG+ TGGSV +PA++CG
Sbjct: 112 SRDPTATLNPHNTGHSP------GGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 232 VGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQ 291
+KP++ + G+ Y+ +LD +G FG+ D L A++G
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGI--------- 216
Query: 292 ISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELG 351
P K ++GV+R+ V+ + + A+ E G
Sbjct: 217 ----------------------VPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAG 254
Query: 352 CTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFG 411
++ + LP + + R +
Sbjct: 255 ASVQAIDLPEAV---HEAWRIHPIIQDFEAHRALAWEFSEH------------------- 292
Query: 412 SEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIG 471
+ +L + + G Y A+++ ++ + D+L++ +AP A
Sbjct: 293 HDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKA 352
Query: 472 EKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKV 531
LA L G P + +P V GLP+G+Q+I ++ L
Sbjct: 353 ------LASTGDPRYNRLWTLMGNPCVNVPVLKVG----GLPIGVQVIARFGNDAHALAT 402
Query: 532 GHIFEQTL 539
E L
Sbjct: 403 AWFLEDAL 410
>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 223
Score = 29.8 bits (66), Expect = 0.72
Identities = 24/145 (16%), Positives = 40/145 (27%), Gaps = 17/145 (11%)
Query: 409 GFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAY 468
G GS D + L+++S ++ ++
Sbjct: 88 GSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 147
Query: 469 KIGEKKNDPLAMYSGDIMTVNVNLAGLPAL--VLPCGFVEGGPIGLPVGLQMIGAAFDEG 526
G K P A Y+ + A P L GG + +PVG
Sbjct: 148 GDGRKGYPPNAPYNAIHVG-----AAAPDTPTELINQLASGGRLIVPVGPDG-----GSQ 197
Query: 527 KLLKV-----GHIFEQTLQGCRFVP 546
+ + G + L G +VP
Sbjct: 198 YMQQYDKDANGKVEMTRLMGVMYVP 222
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 28.3 bits (62), Expect = 2.4
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 10/46 (21%)
Query: 506 EGGPIGLPVGLQMIGAAFDEGKLLKV-----GHIFEQTLQGCRFVP 546
GG + LPVG L + G I + L G +VP
Sbjct: 173 PGGRLILPVGPAG-----GNQMLEQYDKLQDGSIKMKPLMGVIYVP 213
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis)
[TaxId: 5482]}
Length = 334
Score = 27.6 bits (60), Expect = 4.6
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 176 TESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGL 234
+ SSS Q + I SS GS + +S+ + V + G++G+
Sbjct: 68 SSSSSAQNLNQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTTSVDQGIMGI 126
>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable
domain, VL-lambda {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 110
Score = 25.9 bits (56), Expect = 5.8
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 35 QPVTDQSPS-STSPPESQILSIRHS 58
Q V Q + +TSP E+ L+ R S
Sbjct: 1 QAVVTQESALTTSPGETVTLTCRSS 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.375
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,907,754
Number of extensions: 85756
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 10
Length of query: 555
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 465
Effective length of database: 1,171,896
Effective search space: 544931640
Effective search space used: 544931640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.6 bits)