BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008735
(555 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 226/530 (42%), Positives = 308/530 (58%), Gaps = 60/530 (11%)
Query: 34 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQF-LFHAGFCRDGKLIGV 92
IL+ R+ LP+ + ++ + N I++ VGETGSGKTTQ+PQF LF + +
Sbjct: 86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVAC 145
Query: 93 TQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPY 143
TQP EE V+LG+ VGYSIRF+++TS T +K EA+ D
Sbjct: 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHD 205
Query: 144 LSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSXXXXXXXXSDMILDRGNDT 203
LSRYS II+DEAHERT+ TD+L+GLLK+V R
Sbjct: 206 LSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD------------------------- 240
Query: 204 NGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP 263
LK+IIMSA+LDA F YF A + V GR +PVE+ YT +
Sbjct: 241 ----------------LKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQR 284
Query: 264 DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL--PEASRKLVTVPI 321
DYLD+ + T+ Q+H E GDIL+FLTG++EIE R + QL E L P+
Sbjct: 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPL 344
Query: 322 FSSLPSEQQMRVFAPAAAGF-----RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 376
+ SLP QQ R+F PA RKV+++TNIAETS+TI GI YV+DPGF K ++Y+P
Sbjct: 345 YGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNP 404
Query: 377 VKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LEDSTKPEIKRCNLSN 435
+ESLLV PISKA A QR+GRAGR PGKCFRLY E F K L + + PEI R NLS+
Sbjct: 405 RIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSS 464
Query: 436 VILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLD 495
+L+LK LG+DD++ FDFM+ P+ +++++LE+L L L D+ L+ P+G ++ PLD
Sbjct: 465 TVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLT-PLGRLASQFPLD 523
Query: 496 PIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRGKKCNEIFC 545
P+ + LI + +F C +E+L VAMLSV ++F R + +R IF
Sbjct: 524 PMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFA 573
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 226/530 (42%), Positives = 308/530 (58%), Gaps = 60/530 (11%)
Query: 34 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQF-LFHAGFCRDGKLIGV 92
IL+ R+ LP+ + ++ + N I++ VGETGSGKTTQ+PQF LF + +
Sbjct: 86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVAC 145
Query: 93 TQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPY 143
TQP EE V+LG+ VGYSIRF+++TS T +K EA+ D
Sbjct: 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHD 205
Query: 144 LSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSXXXXXXXXSDMILDRGNDT 203
LSRYS II+DEAHERT+ TD+L+GLLK+V R
Sbjct: 206 LSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD------------------------- 240
Query: 204 NGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP 263
LK+IIMSA+LDA F YF A + V GR +PVE+ YT +
Sbjct: 241 ----------------LKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQR 284
Query: 264 DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL--PEASRKLVTVPI 321
DYLD+ + T+ Q+H E GDIL+FLTG++EIE R + QL E L P+
Sbjct: 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPL 344
Query: 322 FSSLPSEQQMRVFAPAAAGF-----RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 376
+ SLP QQ R+F PA RKV+++TNIAETS+TI GI YV+DPGF K ++Y+P
Sbjct: 345 YGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNP 404
Query: 377 VKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LEDSTKPEIKRCNLSN 435
+ESLLV PISKA A QR+GRAGR PGKCFRLY E F K L + + PEI R NLS+
Sbjct: 405 RIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSS 464
Query: 436 VILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLD 495
+L+LK LG+DD++ FDFM+ P+ +++++LE+L L L D+ L+ P+G ++ PLD
Sbjct: 465 TVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLT-PLGRLASQFPLD 523
Query: 496 PIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRGKKCNEIFC 545
P+ + LI + +F C +E+L VAMLSV ++F R + +R IF
Sbjct: 524 PMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFA 573
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 77/155 (49%), Gaps = 11/155 (7%)
Query: 32 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKL-- 89
Q ILQ+R+ LP+ E ++E + +N ++II G TG GKTTQ+PQF+ D
Sbjct: 51 QAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAEC 110
Query: 90 -IGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDD---RTSTSTRIKEA-----LL 140
I VTQP E G E G+ GYS+RF+ R S L
Sbjct: 111 NIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLLRKL 170
Query: 141 DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 175
+ + S +IVDE HER ++TD LL +L+ V A
Sbjct: 171 EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 461 SIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAM 520
++I ++EQL+ LGAL D+ L+ +G +MA PL+P+ K LI++ C EEML V+M
Sbjct: 19 TLITAMEQLYTLGALDDEGLLTR-LGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSM 77
Query: 521 LSVESIFFR 529
LSV+++F+R
Sbjct: 78 LSVQNVFYR 86
>pdb|3RC8|A Chain A, Human Mitochondrial Helicase Suv3 In Complex With Short
Rna Fragment
Length = 677
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 38/181 (20%)
Query: 240 CAKAVHVQGR----QFPVEILYTLYPEPDYLDATLITIFQVHLDEA--------PGDILV 287
CA+ VH+ G +E++YT E + D +T V LD A PGD +V
Sbjct: 268 CAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISV-LDHALESLDNLRPGDCIV 326
Query: 288 FLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR----- 342
+ + +I SV R ++ R L+ + I+ SLP ++ A F
Sbjct: 327 CFS-KNDIYSVSRQIEIRGLE---------SAVIYGSLPPGTKL----AQAKKFNDPNDP 372
Query: 343 -KVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 401
K+++AT+ + + I+ +I +K + + KG L PI+ +QALQ +GRAG
Sbjct: 373 CKILVATDAIGMGLNL-SIRRIIFYSLIKPSINE--KGEREL--EPITTSQALQIAGRAG 427
Query: 402 R 402
R
Sbjct: 428 R 428
>pdb|3RC3|A Chain A, Human Mitochondrial Helicase Suv3
Length = 677
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 38/181 (20%)
Query: 240 CAKAVHVQGRQFPV----EILYTLYPEPDYLDATLITIFQVHLDEA--------PGDILV 287
CA+ VH+ G + E+ YT E + D +T V LD A PGD +V
Sbjct: 268 CAEEVHLCGEPAAIDLVXELXYTTGEEVEVRDYKRLTPISV-LDHALESLDNLRPGDCIV 326
Query: 288 FLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR----- 342
+ + +I SV R ++ R L+ + I+ SLP ++ A F
Sbjct: 327 CFS-KNDIYSVSRQIEIRGLE---------SAVIYGSLPPGTKL----AQAKKFNDPNDP 372
Query: 343 -KVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 401
K+++AT+ + + I+ +I +K + + KG L PI+ +QALQ +GRAG
Sbjct: 373 CKILVATDAIGXGLNL-SIRRIIFYSLIKPSINE--KGEREL--EPITTSQALQIAGRAG 427
Query: 402 R 402
R
Sbjct: 428 R 428
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 325 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLL 384
L +Q + A G V++AT++ E + +P + V+ Y+PV
Sbjct: 403 LSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV--------FYEPVP------ 448
Query: 385 VVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK 419
S +++QR GR GR PG+ L + D+
Sbjct: 449 ----SAIRSIQRRGRTGRHMPGRVIILMAKGTRDE 479
>pdb|3K1A|A Chain A, Insights Into Substrate Binding At Femo-Cofactor In
Nitrogenase From The Structure Of An Alpha-70ile Mofe
Protein Variant
pdb|3K1A|C Chain C, Insights Into Substrate Binding At Femo-Cofactor In
Nitrogenase From The Structure Of An Alpha-70ile Mofe
Protein Variant
Length = 491
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETS- 354
E VE L+QE L PE +RK + + V PA +K I++ ++
Sbjct: 6 EEVESLIQEVLEVYPEKARK----------DRNKHLAVNDPAVTQSKKCIISNKKSQPGL 55
Query: 355 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 399
+TI G Y G V + P+K M + P+ Q R+GR
Sbjct: 56 MTIRGCAYAGSKGIV----WGPIKDMIHISHGPVGCGQ-YSRAGR 95
>pdb|3MIN|A Chain A, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|3MIN|C Chain C, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|A Chain A, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|C Chain C, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|1N2C|A Chain A, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|C Chain C, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1L5H|A Chain A, Femo-Cofactor Deficient Nitrogenase Mofe Protein
pdb|1M1N|A Chain A, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|C Chain C, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|E Chain E, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|G Chain G, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1Y|A Chain A, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|C Chain C, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|I Chain I, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|K Chain K, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M34|A Chain A, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|C Chain C, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|I Chain I, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|K Chain K, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|2AFH|A Chain A, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFH|C Chain C, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFI|A Chain A, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|C Chain C, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|I Chain I, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|K Chain K, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFK|A Chain A, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|C Chain C, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
Length = 491
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETS- 354
E VE L+QE L PE +RK + + V PA +K I++ ++
Sbjct: 6 EEVESLIQEVLEVYPEKARK----------DRNKHLAVNDPAVTQSKKCIISNKKSQPGL 55
Query: 355 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 399
+TI G Y G V + P+K M + P+ Q R+GR
Sbjct: 56 MTIRGCAYAGSKGVV----WGPIKDMIHISHGPVGCGQ-YSRAGR 95
>pdb|1G20|A Chain A, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|C Chain C, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|A Chain A, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|C Chain C, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|3U7Q|A Chain A, A. Vinelandii Nitrogenase Mofe Protein At Atomic
Resolution
pdb|3U7Q|C Chain C, A. Vinelandii Nitrogenase Mofe Protein At Atomic
Resolution
Length = 492
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETS- 354
E VE L+QE L PE +RK + + V PA +K I++ ++
Sbjct: 7 EEVESLIQEVLEVYPEKARK----------DRNKHLAVNDPAVTQSKKCIISNKKSQPGL 56
Query: 355 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 399
+TI G Y G V + P+K M + P+ Q R+GR
Sbjct: 57 MTIRGCAYAGSKGVV----WGPIKDMIHISHGPVGCGQ-YSRAGR 96
>pdb|1FP4|A Chain A, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
pdb|1FP4|C Chain C, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
Length = 492
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETS- 354
E VE L+QE L PE +RK + + V PA +K I++ ++
Sbjct: 7 EEVESLIQEVLEVYPEKARK----------DRNKHLAVNDPAVTQSKKCIISNKKSQPGL 56
Query: 355 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 399
+TI G Y G V + P+K M + P+ Q R+GR
Sbjct: 57 MTIRGCAYAGSKGVV----WGPIKDMIHISHGPVGCGQ-YSRAGR 96
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 321 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 380
+ L ++++ R+ G KV++ TN+ + IP + V++ YD + +
Sbjct: 65 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN--------YD-LPTL 115
Query: 381 ESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKL 420
+ P + + R+GR GR+G F ++ +N F+ L
Sbjct: 116 ANGQADPATYIHRIGRTGRFGRKGVAISF-VHDKNSFNIL 154
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 19 HSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 78
H +P + Q++L +++ S +R V+ R ++++ GETGSGKTT + +
Sbjct: 140 HVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLER---VIVVAGETGSGKTTLMKALM 196
Query: 79 FHAGFCRDGKLIGV 92
F D +LI +
Sbjct: 197 QEIPF--DQRLITI 208
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 321 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 380
+ L ++++ R+ G KV++ TN+ + IP + V++ YD + +
Sbjct: 67 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVN--------YD-LPTL 117
Query: 381 ESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKL 420
+ P + + R+GR GR+G F ++ +N F+ L
Sbjct: 118 ANGQADPATYIHRIGRTGRFGRKGVAISF-VHDKNSFNIL 156
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 321 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 380
+ L ++++ R+ G KV++ TN+ + IP + V++ YD + +
Sbjct: 66 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVN--------YD-LPTL 116
Query: 381 ESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKL 420
+ P + + R+GR GR+G F ++ +N F+ L
Sbjct: 117 ANGQADPATYIHRIGRTGRFGRKGVAISF-VHDKNSFNIL 155
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 50 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF 83
+E++RK I+ I+G GSGK TQ + + GF
Sbjct: 5 FMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKYGF 38
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
Query: 50 LVEEVRKND---ILIIVGETGSGKTT---QLPQFLFHAGFC 84
L+EE+RK + +++ VG GSGKTT +L +L + GF
Sbjct: 119 LIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFS 159
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 321 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 380
+ L ++++ R+ G KV++ TN+ + IP + V++ YD + +
Sbjct: 273 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN--------YD-LPTL 323
Query: 381 ESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKL 420
+ P + + R+GR GR+G F ++ +N F+ L
Sbjct: 324 ANGQADPATYIHRIGRTGRFGRKGVAISF-VHDKNSFNIL 362
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 321 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 380
+ L ++++ R+ G KV++ TN+ + IP + V++ YD + +
Sbjct: 273 LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN--------YD-LPTL 323
Query: 381 ESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKL 420
+ P + + R+GR GR+G F ++ +N F+ L
Sbjct: 324 ANGQADPATYIHRIGRTGRFGRKGVAISF-VHDKNSFNIL 362
>pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor
pdb|2X24|B Chain B, Bovine Acc2 Ct Domain In Complex With Inhibitor
Length = 793
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 15/145 (10%)
Query: 254 EILYTLYPEPDYLDATLITIFQVHLDEAPGDILV---FLTGQEEIESVERLVQERLLQLP 310
+ L+ ++P PD ++T ++ LD P LV L G E+ V + + L+ P
Sbjct: 61 QALFKMWPSPDKYPKDILTYTELVLD--PQGQLVEMNRLPGGNEVGMVAFKMTLKTLEYP 118
Query: 311 EASRKL-----VTVPIFSSLPSEQQMRVFAPA---AAGFRKVILATNIAETSVTIPGIKY 362
E + +T I S P E + + A A G +V LA N IK+
Sbjct: 119 EGRDIILISNDITFRIGSFGPGEDLLYLRASELARAEGIPRVYLAANSGARIGLAEEIKH 178
Query: 363 VIDPGFVKARLYDPVKGMESLLVVP 387
+ +V DP KG++ L + P
Sbjct: 179 MFQVAWVDPE--DPHKGIKYLYLTP 201
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 52 EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC 84
E+++K +I+ +VG GSGK TQ + + G+
Sbjct: 4 EKLKKTNIIFVVGGPGSGKGTQCEKIVQKYGYT 36
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 36 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQL 74
Q +KS V K + +R+ ++++++G +GSGK+T L
Sbjct: 29 QLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFL 67
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 36 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQL 74
Q +KS V K + +R+ ++++++G +GSGK+T L
Sbjct: 8 QLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFL 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,080,425
Number of Sequences: 62578
Number of extensions: 579749
Number of successful extensions: 1750
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1724
Number of HSP's gapped (non-prelim): 33
length of query: 555
length of database: 14,973,337
effective HSP length: 104
effective length of query: 451
effective length of database: 8,465,225
effective search space: 3817816475
effective search space used: 3817816475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)