BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008735
(555 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1
Length = 1244
Score = 489 bits (1259), Expect = e-137, Method: Compositional matrix adjust.
Identities = 257/528 (48%), Positives = 351/528 (66%), Gaps = 57/528 (10%)
Query: 16 PKLHSKPFFNDSSSRRQK----ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT 71
P+ F + +S +K IL+QR+SLPI ++++LV+ V N ILI++GETGSGKT
Sbjct: 560 PEWKKHAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKT 619
Query: 72 TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST 131
TQ+ Q+L AG+ GK IG TQPRRVAA++VAKRV+EE G LGQ VGY+IRF+D TS
Sbjct: 620 TQITQYLAEAGYTSRGK-IGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSP 678
Query: 132 STRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADG 182
T IK E L+DP L++Y+ I++DEAHERT+HTDVL GLLKK R
Sbjct: 679 ETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQD---- 734
Query: 183 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAK 242
+KLI+ SA+LDA FS+YF A
Sbjct: 735 -------------------------------------MKLIVTSATLDAVKFSQYFYEAP 757
Query: 243 AVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLV 302
+ GR +PVEILYT PE DYLDA+LIT+ Q+HL E PGDILVFLTGQEEI++ ++
Sbjct: 758 IFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEIL 817
Query: 303 QERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKY 362
ER+ L +L+ +P++S+LPSE Q R+F PA G RKV++ATNIAETS+TI GI Y
Sbjct: 818 YERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYY 877
Query: 363 VIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF-DKLE 421
V+DPGFVK ++Y+ G++ L+V PIS+AQA QR+GRAGR GPGKC+RLY E + D++
Sbjct: 878 VVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEML 937
Query: 422 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKL 481
+ PEI+R NL++ +L LKA+G++D++ FDFM+ P ++I ++EQL+ LGAL D+ L
Sbjct: 938 TTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLL 997
Query: 482 SDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFR 529
+ +G +MA PL+P+ K LI++ C EEML V+MLSV+++F+R
Sbjct: 998 TR-LGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYR 1044
>sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1
Length = 1220
Score = 489 bits (1259), Expect = e-137, Method: Compositional matrix adjust.
Identities = 257/528 (48%), Positives = 351/528 (66%), Gaps = 57/528 (10%)
Query: 16 PKLHSKPFFNDSSSRRQK----ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT 71
P+ F + +S +K IL+QR+SLPI ++++LV+ V N ILI++GETGSGKT
Sbjct: 536 PEWKKHAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKT 595
Query: 72 TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST 131
TQ+ Q+L AG+ GK IG TQPRRVAA++VAKRV+EE G LGQ VGY+IRF+D TS
Sbjct: 596 TQITQYLAEAGYTSRGK-IGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSP 654
Query: 132 STRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADG 182
T IK E L+DP L++Y+ I++DEAHERT+HTDVL GLLKK R
Sbjct: 655 ETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQD---- 710
Query: 183 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAK 242
+KLI+ SA+LDA FS+YF A
Sbjct: 711 -------------------------------------MKLIVTSATLDAVKFSQYFYEAP 733
Query: 243 AVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLV 302
+ GR +PVEILYT PE DYLDA+LIT+ Q+HL E PGDILVFLTGQEEI++ ++
Sbjct: 734 IFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEIL 793
Query: 303 QERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKY 362
ER+ L +L+ +P++S+LPSE Q R+F PA G RKV++ATNIAETS+TI GI Y
Sbjct: 794 YERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYY 853
Query: 363 VIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF-DKLE 421
V+DPGFVK ++Y+ G++ L+V PIS+AQA QR+GRAGR GPGKC+RLY E + D++
Sbjct: 854 VVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEML 913
Query: 422 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKL 481
+ PEI+R NL++ +L LKA+G++D++ FDFM+ P ++I ++EQL+ LGAL D+ L
Sbjct: 914 TTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLL 973
Query: 482 SDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFR 529
+ +G +MA PL+P+ K LI++ C EEML V+MLSV+++F+R
Sbjct: 974 TR-LGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYR 1020
>sp|O42643|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp22 PE=1 SV=1
Length = 1168
Score = 484 bits (1246), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/504 (50%), Positives = 337/504 (66%), Gaps = 52/504 (10%)
Query: 36 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 95
+QR+ LP+ + K+ +E V KN IL+++GETGSGKTTQ+ Q+L G+ D K+IG TQP
Sbjct: 505 EQREGLPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQYLAEEGYTSDSKMIGCTQP 564
Query: 96 RRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSR 146
RRVAA++VAKRVAEE G +G+ VGY+IRF+D+TS T+IK E L+DP LS+
Sbjct: 565 RRVAAMSVAKRVAEEVGCRVGEEVGYTIRFEDKTSRMTQIKYMTDGMLQRECLVDPLLSK 624
Query: 147 YSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGI 206
YS II+DEAHERTV TDVL GLLK +L R +
Sbjct: 625 YSVIILDEAHERTVATDVLFGLLKGT-----------------------VLKRPD----- 656
Query: 207 NTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYL 266
LKLI+ SA+LDA FS YF + GR +PVEI+YT PE DYL
Sbjct: 657 -------------LKLIVTSATLDAERFSSYFYKCPIFTIPGRSYPVEIMYTKQPEADYL 703
Query: 267 DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLP 326
DA L+T+ Q+HL E PGDILVFLTGQEEI++ ++ ER L ++ +LV +P++S+LP
Sbjct: 704 DAALMTVMQIHLSEGPGDILVFLTGQEEIDTSCEILYERSKMLGDSIPELVILPVYSALP 763
Query: 327 SEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVV 386
SE Q R+F PA G RKV++ATNIAETS+TI GI YV+DPGFVK +DP GM+SL+V
Sbjct: 764 SEIQSRIFEPAPPGGRKVVIATNIAETSLTIDGIYYVVDPGFVKQSCFDPKLGMDSLIVT 823
Query: 387 PISKAQALQRSGRAGREGPGKCFRLYPENEF-DKLEDSTKPEIKRCNLSNVILQLKALGV 445
PIS+AQA QRSGRAGR GPGKC+RLY E+ + +++ S PEI+R NLS+ IL LKA+G+
Sbjct: 824 PISQAQARQRSGRAGRTGPGKCYRLYTESAYRNEMLPSPIPEIQRQNLSHTILMLKAMGI 883
Query: 446 DDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVA 505
+D++ FDFM+ P ++I +L+ L+ L AL DD L P+G +MA P++P SK LI +
Sbjct: 884 NDLLNFDFMDPPPAQTMIAALQNLYALSAL-DDEGLLTPLGRKMADFPMEPQLSKVLITS 942
Query: 506 GQFNCLEEMLITVAMLSVESIFFR 529
+ C EEML +AMLSV +I+ R
Sbjct: 943 VELGCSEEMLSIIAMLSVPNIWSR 966
>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5
OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1
Length = 1200
Score = 478 bits (1229), Expect = e-134, Method: Compositional matrix adjust.
Identities = 263/544 (48%), Positives = 347/544 (63%), Gaps = 67/544 (12%)
Query: 34 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT 93
+++QR+SLPI +++K L+E + N IL++VGETGSGKTTQ+ Q+ AG R GK IG T
Sbjct: 533 MVEQRESLPIFALKKNLMEAMIDNQILVVVGETGSGKTTQMTQYAIEAGLGRRGK-IGCT 591
Query: 94 QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYL 144
QPRRVAA++VAKRVAEE G +LG VGY+IRF+D TS T IK E L+DP L
Sbjct: 592 QPRRVAAMSVAKRVAEEYGCKLGTDVGYTIRFEDCTSQDTIIKYMTDGMLLRECLIDPDL 651
Query: 145 SRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTN 204
S YS I++DEAHERT+HTDVL GLLK
Sbjct: 652 SGYSLIMLDEAHERTIHTDVLFGLLK---------------------------------- 677
Query: 205 GINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPD 264
RK LKLII SA+LD+ FSEYF A + GR FPVEILYT PE D
Sbjct: 678 -------AAARKRPELKLIITSATLDSVKFSEYFLEAPIFTIPGRTFPVEILYTREPESD 730
Query: 265 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 324
YL+A IT+ Q+HL E PGD+LVFLTGQEEI++ ++ ER+ + +L+ +P++ +
Sbjct: 731 YLEAAHITVMQIHLTEPPGDVLVFLTGQEEIDTSCEVLYERMKSMGPDVPELIILPVYGA 790
Query: 325 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLL 384
LPSE Q R+F PA AG RKV++ATNIAETS+TI GI YV+DPGFVK ++Y+P GM+SL+
Sbjct: 791 LPSEMQTRIFDPAPAGKRKVVIATNIAETSLTIDGIFYVVDPGFVKQKIYNPKSGMDSLV 850
Query: 385 VVPISKAQALQRSGRAGREGPGKCFRLYPENEF-DKLEDSTKPEIKRCNLSNVILQLKAL 443
V PIS+A A QRSGRAGR GPGKC+RLY E F D++ + PEI+R NL++ +LQLKA+
Sbjct: 851 VTPISQAAAKQRSGRAGRTGPGKCYRLYTERAFRDEMLPTPVPEIQRTNLASTLLQLKAM 910
Query: 444 GVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALI 503
G++++I FDFM+ P S+I +L L L AL D L+ +G +MA PL+P SK LI
Sbjct: 911 GINNLIDFDFMDAPPLDSMITALNTLHTLSALDGDGLLTK-LGRRMAEFPLEPSLSKLLI 969
Query: 504 VAGQFNCLEEMLITVAMLSVESIFFRSPGEVR-------------RGKKCNEIFCKSRWR 550
++ C EE+L VAML+V++IF+R P E + G + + W+
Sbjct: 970 MSVDLGCSEEVLTIVAMLNVQNIFYR-PKEKQDHADQKKAKFHQPEGDHLTLLAVYNSWK 1028
Query: 551 SPHF 554
+ HF
Sbjct: 1029 NHHF 1032
>sp|Q03319|PRH1_SCHPO Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=prh1 PE=3 SV=2
Length = 719
Score = 475 bits (1222), Expect = e-133, Method: Compositional matrix adjust.
Identities = 243/512 (47%), Positives = 340/512 (66%), Gaps = 52/512 (10%)
Query: 26 DSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR 85
+S S+R+ IL+QRK+LPI L ++++ N ++++VGETGSGK+TQ+PQFL + +
Sbjct: 81 NSPSKRKDILEQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECPYAQ 140
Query: 86 DGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK--------- 136
+G + +TQPRRVAAV +AKRVA E G LG++VGYSIRFDD TS TRIK
Sbjct: 141 EG-CVAITQPRRVAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLR 199
Query: 137 EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMI 196
E + DP LS+Y +I+DEAHERT+ TD+LLG +KK+ R
Sbjct: 200 ELINDPILSQYHTLILDEAHERTLMTDMLLGFVKKIIKKR-------------------- 239
Query: 197 LDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 256
L++IIMSA+L+A FSE+F A+ ++ GRQ+PV+I
Sbjct: 240 ---------------------PALRVIIMSATLNAERFSEFFDGAEICYISGRQYPVQIH 278
Query: 257 YTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 316
YT PEPDYLDA L TIFQ+H PGDILVFLTGQ+EIE++E L++ QLP ++
Sbjct: 279 YTYTPEPDYLDACLRTIFQLHTKLPPGDILVFLTGQDEIEALEALIKSYSKQLPSNLPQI 338
Query: 317 VTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 376
P+F+SLP EQQ++VF PA A RKV+L+TNIAETSVTI GI+YVID G K + ++
Sbjct: 339 QACPLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVIDTGLAKIKQFNS 398
Query: 377 VKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSNV 436
G+ESL V PIS++ A+QRSGRAGRE G+C+R+Y E +FDKL T PEIKR +LS
Sbjct: 399 KLGLESLTVQPISQSAAMQRSGRAGREAAGQCYRIYTEADFDKLPKETIPEIKRIDLSQA 458
Query: 437 ILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDP 496
+L LKA G +D+I F +M+ PS+ ++++LE L+ +GAL D+ ++D +G+QM+ +PL P
Sbjct: 459 VLTLKARGQNDVINFHYMDPPSKEGLLRALEHLYSIGALDDNGHIND-LGYQMSLIPLLP 517
Query: 497 IYSKALIVAGQFNCLEEMLITVAMLSVESIFF 528
++A++ A + NCL E++ V+ LS +S+F
Sbjct: 518 SLARAVLAAREHNCLSEVIDVVSCLSTDSMFL 549
>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8
PE=3 SV=1
Length = 1160
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 249/516 (48%), Positives = 344/516 (66%), Gaps = 55/516 (10%)
Query: 24 FNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF 83
+ ++SR I +QR+SLPI + + ++ V ++ +L+++GETGSGKTTQ+ Q+L AG+
Sbjct: 493 YGKATSR--SIKEQRESLPIFPLREAFLQAVSEHQLLVVIGETGSGKTTQMAQYLAEAGY 550
Query: 84 CRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK------- 136
GK IG TQPRRVAA++V+KRVAEE G +LGQ VGY+IRF+D TS T IK
Sbjct: 551 GTRGK-IGCTQPRRVAAMSVSKRVAEEFGCQLGQEVGYAIRFEDCTSPETIIKFMTDGIL 609
Query: 137 --EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSD 194
E LLDP LS YS II+DEAHERT+ TDVL GLLK+ R +
Sbjct: 610 LRECLLDPNLSAYSVIILDEAHERTISTDVLFGLLKQALQRRPE---------------- 653
Query: 195 MILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVE 254
LK++I SA+L+A FS+YF A+ + GR FPV+
Sbjct: 654 -------------------------LKVLITSATLEAEKFSKYFMNAQLFIIPGRTFPVD 688
Query: 255 ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASR 314
I YT PE DYLDA+LIT+ Q+HL E PGDIL+FLTGQEEI++ +++ ER+ L
Sbjct: 689 IRYTKDPEADYLDASLITVMQIHLSEPPGDILLFLTGQEEIDAACQILYERMKSLGSNVP 748
Query: 315 KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLY 374
L+ +P++S+LPSE Q ++F PA G RKV++ATNIAETS+TI GI YVIDPGF K + +
Sbjct: 749 DLIILPVYSALPSEMQTKIFEPAPPGSRKVVIATNIAETSLTIDGIYYVIDPGFSKQKCF 808
Query: 375 DPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF-DKLEDSTKPEIKRCNL 433
+P GM+SL+V PIS+A A QRSGRAGR GPGKC+RLY E+ F +++ S+ PEI+R NL
Sbjct: 809 NPKNGMDSLVVAPISQAAARQRSGRAGRTGPGKCYRLYTESAFKNEMLASSIPEIQRTNL 868
Query: 434 SNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLP 493
N +L +KA+G++D++ FDFM+ P +++ ++EQL+ LGAL ++ L+ +G +MA P
Sbjct: 869 GNTVLTMKAMGINDLLNFDFMDPPPVQTLVSAMEQLYSLGALDEEGLLTR-LGRKMAEFP 927
Query: 494 LDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFR 529
LDP SK LI + C +E+L VAMLSV+++F+R
Sbjct: 928 LDPQLSKMLIASVDLGCSDEILTVVAMLSVQNVFYR 963
>sp|Q80VY9|DHX33_MOUSE Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33
PE=1 SV=1
Length = 698
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/519 (46%), Positives = 339/519 (65%), Gaps = 51/519 (9%)
Query: 27 SSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD 86
+S R+ + QR+SLPI +L+ ++R D +++GETGSGKTTQ+PQ+L+ G R
Sbjct: 51 ASPYREALELQRRSLPIFRARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQ 110
Query: 87 GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------E 137
G +I VTQPRRVAA+++A RV++E ELG+ VGY++RF+D TS TRIK E
Sbjct: 111 G-IIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLRE 169
Query: 138 ALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMIL 197
A+ D L +YS +I+DEAHERT+HTDVL G++K Q R +
Sbjct: 170 AISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGK---------------- 213
Query: 198 DRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILY 257
PLK+I+MSA++D FS+YF A ++++GRQ P++I Y
Sbjct: 214 --------------------LPLKVIVMSATMDVDLFSQYFNRAPVLYLEGRQHPIQIFY 253
Query: 258 TLYPEPDYLDATLITIFQVHLDEAPG--DILVFLTGQEEIESVERLVQERLLQLPEASRK 315
T P+ DYL A L+++FQ+H EAP DILVFLTGQEEIE++ + ++ LP+
Sbjct: 254 TKQPQQDYLHAALVSVFQIH-QEAPASQDILVFLTGQEEIEAMSKTCRDIARHLPDGCPS 312
Query: 316 LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYD 375
++ +P+++SLP QQ+RVF A G+RKVI++TNIAETS+TI GIKYV+D G VKA+ Y+
Sbjct: 313 MLVLPLYASLPYSQQLRVFQGAPKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYN 372
Query: 376 PVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSN 435
P G+E L V +SK QA QR+GRAGRE G C+RLY E+EF+K E T PEI+RCNL++
Sbjct: 373 PDSGLEVLAVQRVSKTQAWQRTGRAGREDSGICYRLYTEDEFEKFEKMTVPEIQRCNLAS 432
Query: 436 VILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGAL--TDDCKLSDPVGHQMARLP 493
VILQL A+ V +++ FDFM KPS I ++ QL LLGAL DD P+G +MA P
Sbjct: 433 VILQLLAMKVPNVLTFDFMSKPSPDHIEAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFP 492
Query: 494 LDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPG 532
L+P ++K ++++ +F+C EE+L V++LSV+S+ + P
Sbjct: 493 LEPRFAKTILLSSKFHCTEEILTIVSLLSVDSVLYNPPA 531
>sp|Q54MH3|DHX16_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1
Length = 1106
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/521 (46%), Positives = 336/521 (64%), Gaps = 56/521 (10%)
Query: 21 KPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 80
KP + S+ + I + RKSLP+ ++L++ VR+ +LIIVGETGSGKTTQ+PQ+L
Sbjct: 447 KPGDDGSAQAKMTIQEVRKSLPVYPYREQLIDAVREYQVLIIVGETGSGKTTQIPQYLHE 506
Query: 81 AGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST------- 133
AGF + GK IG TQPRRVAA++VA RVAEE G +LG VGYSIRF+D TS T
Sbjct: 507 AGFSKTGK-IGCTQPRRVAAMSVAARVAEEVGCKLGNEVGYSIRFEDCTSQKTVLQYMTD 565
Query: 134 --RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNE 191
++E L P L+ YS +I+DEAHERT+HTD+L GLLK +
Sbjct: 566 GMLVREFLTAPDLASYSVLIIDEAHERTLHTDILFGLLKDIT------------------ 607
Query: 192 NSDMILDRGNDTNGINTLKQCQGRKFAP-LKLIIMSASLDARGFSEYFGCAKAVHVQGRQ 250
+F P LKL+I SA++DA FS+YF A ++ GR+
Sbjct: 608 ------------------------RFRPDLKLLISSATMDAERFSDYFDGAPTFNIPGRK 643
Query: 251 FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP 310
+ V YT PE DYLDA ++T+ Q+H+ E GDILVFLTGQEE++ ++Q R L
Sbjct: 644 YEVTTHYTQAPEADYLDAAVVTVLQIHITEPLGDILVFLTGQEEVDQAAEMLQTRTRGLG 703
Query: 311 EASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVK 370
++L+ I+S+LP++ Q ++F P RKV+LATNIAETS+TI GI YVIDPGF K
Sbjct: 704 TKIKELIITRIYSTLPTDLQAKIFEPTPPNARKVVLATNIAETSLTIDGIIYVIDPGFCK 763
Query: 371 ARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD-KLEDSTKPEIK 429
++++P GMESL++ P+S+A A QR GRAGR PGKCFRL+ FD +LE++T PEI+
Sbjct: 764 QKMFNPRTGMESLVITPVSRASANQRKGRAGRVAPGKCFRLFTAWAFDNELEENTIPEIQ 823
Query: 430 RCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQM 489
R NL NV+L LK++G++D++ FDFM+ P ++I +LEQL+ LGAL D +L+ +G +M
Sbjct: 824 RTNLGNVVLLLKSMGINDLMNFDFMDPPPAQTLIAALEQLYALGALNDRGQLT-KLGRKM 882
Query: 490 ARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSV-ESIFFR 529
A P+DP SK +I + ++ C EE+L AMLSV +IF+R
Sbjct: 883 AEFPVDPQLSKMIIASEKYKCSEEILTICAMLSVGNTIFYR 923
>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2
Length = 1168
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 243/506 (48%), Positives = 332/506 (65%), Gaps = 53/506 (10%)
Query: 34 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT 93
I +QR+SLPI ++K L++ V N +L+++GETGSGKTTQ+ Q+L AG+ GK IG T
Sbjct: 508 IQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGK-IGCT 566
Query: 94 QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYL 144
QPRRVAA++VAKRVAEE G LG+ VGY+IRF+D T T IK E L+D L
Sbjct: 567 QPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENL 626
Query: 145 SRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTN 204
S+YS I++DEAHERT+HTDVL GLLKK+ R LD
Sbjct: 627 SQYSVIMLDEAHERTIHTDVLFGLLKKLMKRR--------------------LD------ 660
Query: 205 GINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPD 264
L+LI+ SA+LDA FS YF + GR FPVEILYT PE D
Sbjct: 661 ---------------LRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETD 705
Query: 265 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 324
YLDA LIT+ Q+HL E GDILVFLTGQEEI+S + + ER+ L + +L+ +P++S+
Sbjct: 706 YLDAALITVLQIHLTEPEGDILVFLTGQEEIDSACQSLYERMKGLGKNVPELIILPVYSA 765
Query: 325 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLL 384
LPSE Q R+F P G RKV++ATNIAE S+TI GI YV+DPGF K +Y+P +G+ESL+
Sbjct: 766 LPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLV 825
Query: 385 VVPISKAQALQRSGRAGREGPGKCFRLYPENEF-DKLEDSTKPEIKRCNLSNVILQLKAL 443
+ PIS+A A QR+GRAGR GPGKC+RLY E+ + +++ ++ PEI+R NL L +KA+
Sbjct: 826 ITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTMKAM 885
Query: 444 GVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALI 503
G++D++ FDFM+ P ++I ++EQL+ LGAL ++ L+ +G +MA PL+P SK L+
Sbjct: 886 GINDLLSFDFMDPPQPQALISAMEQLYSLGALDEEGLLTK-LGRKMAEFPLEPPLSKMLL 944
Query: 504 VAGQFNCLEEMLITVAMLSVESIFFR 529
+ C +E+L +AM+ +IF+R
Sbjct: 945 ASVDLGCSDEILTMIAMIQTGNIFYR 970
>sp|O45244|DHX16_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4
OS=Caenorhabditis elegans GN=mog-4 PE=1 SV=2
Length = 1008
Score = 458 bits (1178), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/522 (46%), Positives = 332/522 (63%), Gaps = 54/522 (10%)
Query: 25 NDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC 84
++ ++ I + RKSLP+ + +E V+++ +LII GETGSGKTTQLPQ+L+ AGFC
Sbjct: 348 TEAEKKKMSIEETRKSLPVYAFRDAFIEAVKEHQVLIIEGETGSGKTTQLPQYLYEAGFC 407
Query: 85 RDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK-------- 136
GK IG TQPRRVAA++VA RVA+E G +LG +VGYSIRF+D TS T +K
Sbjct: 408 EGGKRIGCTQPRRVAAMSVAARVADEVGCKLGTQVGYSIRFEDCTSEKTVLKYMTDGMLL 467
Query: 137 -EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDM 195
E L +P L+ YS +++DEAHERT+HTD+L GL+K + R
Sbjct: 468 REFLNEPDLASYSVMMIDEAHERTLHTDILFGLVKDIARFRKD----------------- 510
Query: 196 ILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEI 255
LKL+I SA+LDA FS +F A + GR+FPV+I
Sbjct: 511 ------------------------LKLLISSATLDAEKFSSFFDDAPIFRIPGRRFPVDI 546
Query: 256 LYTLYPEPDYLDATLITIFQVHLDEA-PGDILVFLTGQEEIESVERLVQERLLQLPEASR 314
YT PE DY+DA ++TI Q+HL + PGDILVFLTGQEEIE+V+ + ER L +
Sbjct: 547 YYTQAPEADYVDAAIVTIMQIHLTQPLPGDILVFLTGQEEIETVQEALMERSKALGSKIK 606
Query: 315 KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLY 374
+L+ +P++++LPS+ Q ++F P RKV+LATNIAETSVTI GI YVIDPGF K +
Sbjct: 607 ELIPLPVYANLPSDLQAKIFEPTPKDARKVVLATNIAETSVTIDGINYVIDPGFSKQNSF 666
Query: 375 DPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD-KLEDSTKPEIKRCNL 433
D G+E L VV ISKA A QR+GRAGR GPGKCFRLY + +LE+ PEI+R NL
Sbjct: 667 DARSGVEHLHVVTISKAAANQRAGRAGRTGPGKCFRLYTAWAYKHELEEQPIPEIQRTNL 726
Query: 434 SNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLP 493
NV+L LK+LG+ D++ FDF++ P + +++ +LEQL+ LGAL +L+ +G +MA P
Sbjct: 727 GNVVLMLKSLGIHDLVHFDFLDPPPQETLVIALEQLYALGALNHRGELT-KLGRRMAEFP 785
Query: 494 LDPIYSKALIVAGQFNCLEEMLITVAMLSVE-SIFFRSPGEV 534
DP SK +I + ++ C EE++ AMLS ++F+R +V
Sbjct: 786 CDPCMSKMIIASEKYECSEEIVTIAAMLSCNAAVFYRPKAQV 827
>sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33
PE=1 SV=2
Length = 707
Score = 455 bits (1170), Expect = e-127, Method: Compositional matrix adjust.
Identities = 235/508 (46%), Positives = 333/508 (65%), Gaps = 51/508 (10%)
Query: 37 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 96
QR+SLPI +L+ ++R D +++GETGSGKTTQ+PQ+L+ G R G +I VTQPR
Sbjct: 70 QRRSLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQG-IIAVTQPR 128
Query: 97 RVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRY 147
RVAA+++A RV++E ELG+ VGY++RFDD TS TRIK EA+ D L +Y
Sbjct: 129 RVAAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLREAISDSLLRKY 188
Query: 148 SAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGIN 207
S +I+DEAHERT+HTDVL G++K Q R +
Sbjct: 189 SCVILDEAHERTIHTDVLFGVVKAAQKRRKELGK-------------------------- 222
Query: 208 TLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLD 267
PLK+I+MSA++D FS+YF A ++++GRQ P+++ YT P+ DYL
Sbjct: 223 ----------LPLKVIVMSATMDVDLFSQYFNGAPVLYLEGRQHPIQVFYTKQPQNDYLH 272
Query: 268 ATLITIFQVHLDEAPG--DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 325
A L+++FQ+H EAP DILVFLTGQEEIE++ + ++ LP+ ++ +P+++SL
Sbjct: 273 AALVSVFQIH-QEAPSSQDILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASL 331
Query: 326 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLV 385
P QQ+RVF A G+RKVI++TNIAETS+TI GIKYV+D G VKA+ Y+P G+E L V
Sbjct: 332 PYAQQLRVFQGAPKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAV 391
Query: 386 VPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSNVILQLKALGV 445
+SK QA QR+GRAGRE G C+RLY E+EF+K + T PEI+RCNL++V+LQL A+ V
Sbjct: 392 QRVSKTQAWQRTGRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKV 451
Query: 446 DDIIGFDFMEKPSRASIIKSLEQLFLLGAL--TDDCKLSDPVGHQMARLPLDPIYSKALI 503
+++ FDFM KPS I ++ QL LLGAL DD P+G +MA PL+P ++K ++
Sbjct: 452 PNVLTFDFMSKPSPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTIL 511
Query: 504 VAGQFNCLEEMLITVAMLSVESIFFRSP 531
++ +F+C EE+L V++LSV+S+ P
Sbjct: 512 MSPKFHCTEEILTIVSLLSVDSVLHNPP 539
>sp|P24384|PRP22_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP22 PE=1 SV=1
Length = 1145
Score = 453 bits (1166), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/506 (45%), Positives = 336/506 (66%), Gaps = 53/506 (10%)
Query: 34 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT 93
I QR++LP+ ++ L++ VR N L+IVGETGSGKTTQ+ Q+L GF G +IG T
Sbjct: 476 ISAQRQTLPVYAMRSELIQAVRDNQFLVIVGETGSGKTTQITQYLDEEGFSNYG-MIGCT 534
Query: 94 QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYL 144
QPRRVAAV+VAKRVAEE G ++G VGY+IRF+D T TRIK EALLDP +
Sbjct: 535 QPRRVAAVSVAKRVAEEVGCKVGHDVGYTIRFEDVTGPDTRIKYMTDGMLQREALLDPEM 594
Query: 145 SRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTN 204
S+YS I++DEAHERTV TDVL LLKK R +
Sbjct: 595 SKYSVIMLDEAHERTVATDVLFALLKKAAIKRPE-------------------------- 628
Query: 205 GINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPD 264
LK+I+ SA+L++ FSEYF +++ G+ FPVE+LY+ P+ D
Sbjct: 629 ---------------LKVIVTSATLNSAKFSEYFLNCPIINIPGKTFPVEVLYSQTPQMD 673
Query: 265 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 324
Y++A L + +H++E PGDILVFLTGQEEI+S ++ +R+ L ++ +L+ +P++S+
Sbjct: 674 YIEAALDCVIDIHINEGPGDILVFLTGQEEIDSCCEILYDRVKTLGDSIGELLILPVYSA 733
Query: 325 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLL 384
LPSE Q ++F P G RKV+ ATNIAETS+TI GI YV+DPGF K +Y+ G+E L+
Sbjct: 734 LPSEIQSKIFEPTPKGSRKVVFATNIAETSITIDGIYYVVDPGFAKINIYNARAGIEQLI 793
Query: 385 VVPISKAQALQRSGRAGREGPGKCFRLYPENEF-DKLEDSTKPEIKRCNLSNVILQLKAL 443
V PIS+AQA QR GRAGR GPGKC+RLY E+ F +++ ++T PEI+R NLS+ IL LKA+
Sbjct: 794 VSPISQAQANQRKGRAGRTGPGKCYRLYTESAFYNEMLENTVPEIQRQNLSHTILMLKAM 853
Query: 444 GVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALI 503
G++D++ FDFM+ P + ++ +L +L+ L +L D+ KL++ +G +M+ P+DP S++L+
Sbjct: 854 GINDLLKFDFMDPPPKNLMLNALTELYHLQSLDDEGKLTN-LGKEMSLFPMDPTLSRSLL 912
Query: 504 VAGQFNCLEEMLITVAMLSVESIFFR 529
+ C +E++ ++MLSV+++F+R
Sbjct: 913 SSVDNQCSDEIVTIISMLSVQNVFYR 938
>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Pan troglodytes GN=DHX16 PE=3 SV=1
Length = 1044
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/526 (44%), Positives = 334/526 (63%), Gaps = 53/526 (10%)
Query: 20 SKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 79
S P + + +++ I R+SLP+ + L+ + + +LII GETGSGKTTQ+PQ+LF
Sbjct: 381 SAPPTSTQAQQKESIQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLF 440
Query: 80 HAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST------ 133
G+ G I TQPRRVAA++VA RVA E GV+LG VGYSIRF+D TS T
Sbjct: 441 EEGYTNKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMT 500
Query: 134 ---RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNN 190
++E L +P L+ YS ++VDEAHERT+HTD+L GL+K V R +
Sbjct: 501 DGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPE------------ 548
Query: 191 ENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQ 250
LK+++ SA++D FS +F A + GR+
Sbjct: 549 -----------------------------LKVLVASATMDTARFSTFFDDAPVFRIPGRR 579
Query: 251 FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP 310
FPV+I YT PE DYL+A ++++ Q+H+ + PGDILVFLTGQEEIE+ ++Q+R +L
Sbjct: 580 FPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLG 639
Query: 311 EASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVK 370
R+L+ +PI+++LPS+ Q R+F P G RKV++ATNIAETS+TI GI YV+DPGF K
Sbjct: 640 SKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCK 699
Query: 371 ARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD-KLEDSTKPEIK 429
+ Y+P GMESL V P SKA A QR+GRAGR GKCFRLY + +LE++T PEI+
Sbjct: 700 QKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQ 759
Query: 430 RCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQM 489
R +L NV+L LK+LG+ D++ FDF++ P +++ +LEQL+ LGAL +L+ G +M
Sbjct: 760 RTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTS-GRKM 818
Query: 490 ARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSV-ESIFFRSPGEV 534
A LP+DP+ SK ++ + +++C EE+L AMLSV SIF+R +V
Sbjct: 819 AELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKV 864
>sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Homo sapiens GN=DHX16 PE=1 SV=2
Length = 1041
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/526 (44%), Positives = 334/526 (63%), Gaps = 53/526 (10%)
Query: 20 SKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 79
S P + + +++ I R+SLP+ + L+ + + +LII GETGSGKTTQ+PQ+LF
Sbjct: 378 SAPPTSTQAQQKESIQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLF 437
Query: 80 HAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST------ 133
G+ G I TQPRRVAA++VA RVA E GV+LG VGYSIRF+D TS T
Sbjct: 438 EEGYTNKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMT 497
Query: 134 ---RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNN 190
++E L +P L+ YS ++VDEAHERT+HTD+L GL+K V R +
Sbjct: 498 DGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPE------------ 545
Query: 191 ENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQ 250
LK+++ SA++D FS +F A + GR+
Sbjct: 546 -----------------------------LKVLVASATMDTARFSTFFDDAPVFRIPGRR 576
Query: 251 FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP 310
FPV+I YT PE DYL+A ++++ Q+H+ + PGDILVFLTGQEEIE+ ++Q+R +L
Sbjct: 577 FPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLG 636
Query: 311 EASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVK 370
R+L+ +PI+++LPS+ Q R+F P G RKV++ATNIAETS+TI GI YV+DPGF K
Sbjct: 637 SKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCK 696
Query: 371 ARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD-KLEDSTKPEIK 429
+ Y+P GMESL V P SKA A QR+GRAGR GKCFRLY + +LE++T PEI+
Sbjct: 697 QKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQ 756
Query: 430 RCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQM 489
R +L NV+L LK+LG+ D++ FDF++ P +++ +LEQL+ LGAL +L+ G +M
Sbjct: 757 RTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTS-GRKM 815
Query: 490 ARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSV-ESIFFRSPGEV 534
A LP+DP+ SK ++ + +++C EE+L AMLSV SIF+R +V
Sbjct: 816 AELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKV 861
>sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Sus scrofa GN=DHX16 PE=3 SV=1
Length = 1045
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 237/515 (46%), Positives = 330/515 (64%), Gaps = 53/515 (10%)
Query: 31 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLI 90
++ I R+SLP+ + L+ V + ILII GETGSGKTTQ+PQ+LF G+ + G I
Sbjct: 393 KESIQAVRRSLPVFPFREELLAAVANHQILIIEGETGSGKTTQIPQYLFEEGYTQKGMKI 452
Query: 91 GVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST---------RIKEALLD 141
TQPRRVAA++VA RVA E GV+LG VGYSIRF+D TS T ++E L +
Sbjct: 453 ACTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSE 512
Query: 142 PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGN 201
P L+ YS ++VDEAHERT+HTD+L GL+K V R +
Sbjct: 513 PDLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPE----------------------- 549
Query: 202 DTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYP 261
LK+++ SA+LD FS +F A + GR+FPV+I YT P
Sbjct: 550 ------------------LKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAP 591
Query: 262 EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI 321
E DYL+A ++++ Q+H+ + PGDILVFLTGQEEIE+ ++Q+R +L R+L+ +PI
Sbjct: 592 EADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPI 651
Query: 322 FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGME 381
+++LPS+ Q R+F P G RKV++ATNIAETS+TI GI YV+DPGF K + Y+P GME
Sbjct: 652 YANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGME 711
Query: 382 SLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD-KLEDSTKPEIKRCNLSNVILQL 440
SL V P SKA A QR+GRAGR GKCFRLY + +LE++T PEI+R +L NV+L L
Sbjct: 712 SLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLL 771
Query: 441 KALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSK 500
K+LG+ D++ FDF++ P +++ +LEQL+ LGAL +L+ G +MA LP+DP+ SK
Sbjct: 772 KSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTS-GRKMAELPVDPMLSK 830
Query: 501 ALIVAGQFNCLEEMLITVAMLSV-ESIFFRSPGEV 534
++ + +++C EE+L AMLSV SIF+R +V
Sbjct: 831 MILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKV 865
>sp|P34498|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1
OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2
Length = 1131
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 241/525 (45%), Positives = 336/525 (64%), Gaps = 57/525 (10%)
Query: 32 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIG 91
+ I QQR+ LP+ + ++++ +R+N+++IIVGETGSGKTTQL Q+L GF D LIG
Sbjct: 432 KSIKQQREYLPVFACRQKMMNVIRENNVVIIVGETGSGKTTQLAQYLLEDGFG-DSGLIG 490
Query: 92 VTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDP 142
TQPRRVAA++VA+RVA+E GV+LGQ VGY+IRF+D TS T IK E L D
Sbjct: 491 CTQPRRVAAMSVARRVADEMGVDLGQDVGYAIRFEDCTSEKTIIKYMTDGILLRECLGDG 550
Query: 143 YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGND 202
L +YSAII+DEAHER+++TDVL GLL++V R
Sbjct: 551 SLDQYSAIIMDEAHERSLNTDVLFGLLREVIAKR-------------------------- 584
Query: 203 TNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG--CAKAVHVQGRQFPVEILYTLY 260
A LKLI+ SA++DA F+++FG C + GR FPVE+ +
Sbjct: 585 ---------------ADLKLIVTSATMDADKFADFFGGNCP-TFTIPGRTFPVELFHART 628
Query: 261 PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP 320
P DY+DA + +HL GDIL+F+ GQE+IE +++E+L +L EA L +P
Sbjct: 629 PVEDYVDAAVKQAVTIHLGGMDGDILIFMPGQEDIECTCEMIKEKLGELDEAP-PLAVLP 687
Query: 321 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 380
I+S LPS+ Q ++F A G RK I+ATNIAETS+T+ GI +VIDPGF K ++Y+P GM
Sbjct: 688 IYSQLPSDLQAKIFQRAPGGMRKAIVATNIAETSLTVDGILFVIDPGFCKMKVYNPRIGM 747
Query: 381 ESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF-DKLEDSTKPEIKRCNLSNVILQ 439
++L + P+S+A A QR+GRAGR GPG+C+RLY E +F D+L ST PEI+R NL+NV+L
Sbjct: 748 DALSIFPVSQASANQRTGRAGRTGPGQCYRLYTERQFKDELLKSTVPEIQRTNLANVVLL 807
Query: 440 LKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYS 499
LK+LGVDD++ F FM+ P + +++ S+ QL+ LGAL + +L+ P+G +M PLDP S
Sbjct: 808 LKSLGVDDLLKFHFMDAPPQDNMLNSMYQLWTLGALDNTGQLT-PMGRKMVEFPLDPTLS 866
Query: 500 KALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRGKKCNEIF 544
K LI++ + C +E+L V+MLSV +IFFR G E F
Sbjct: 867 KMLIMSAEMGCSDEVLTIVSMLSVPAIFFRPKGREEEADAKKEKF 911
>sp|Q9H5Z1|DHX35_HUMAN Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35
PE=1 SV=2
Length = 703
Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/522 (44%), Positives = 327/522 (62%), Gaps = 63/522 (12%)
Query: 34 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT 93
I QQR+ LP+ + ++ + ++IVGETG GK+TQ+PQ+L AG+ +G+++GVT
Sbjct: 47 IEQQRQKLPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVT 106
Query: 94 QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST-STRIK---------EALLDPY 143
QPRRVAAVTVA RVAEE G LG VGY IRFDD T +TRIK E ++DP
Sbjct: 107 QPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPL 166
Query: 144 LSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDT 203
L++YS I++DEAHERT++TD+ +GLLKK+Q R
Sbjct: 167 LTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGD------------------------- 201
Query: 204 NGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKA----------VHVQGRQFPV 253
L+LI+ SA+LDA F ++F + + V+GR FPV
Sbjct: 202 ----------------LRLIVASATLDADKFRDFFNQNETSDPARDTCVILTVEGRTFPV 245
Query: 254 EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLV--QERLLQLPE 311
+I Y P PDY+ +T+ T+ ++H E GD+L FLTGQEE+E+V ++ Q R L
Sbjct: 246 DIFYLQSPVPDYIKSTVETVVKIHQTEGDGDVLAFLTGQEEVETVVSMLIEQARALARTG 305
Query: 312 ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 371
R L +P+++ LPS +QM+VF + RKVI+ATN+AETS+TI GI YVID GFVK
Sbjct: 306 MKRHLRVLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKL 365
Query: 372 RLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRC 431
R Y+P +E L+VVP+S+A A QR+GR GR GKC+RLY E FDKL ST PE++R
Sbjct: 366 RAYNPRTAIECLVVVPVSQASANQRAGRGGRSRSGKCYRLYTEEAFDKLPQSTVPEMQRS 425
Query: 432 NLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMAR 491
NL+ VILQLKALG+D+++ F FM P S++++LE L+ LG L DC+L++P+G ++A
Sbjct: 426 NLAPVILQLKALGIDNVLRFHFMSPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAE 485
Query: 492 LPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGE 533
PL+P+++K L+ +G F C +E+L AM+ +++IF P +
Sbjct: 486 FPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNIFVVPPNQ 527
>sp|Q5RBD4|DHX35_PONAB Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35
PE=2 SV=1
Length = 720
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 233/533 (43%), Positives = 329/533 (61%), Gaps = 63/533 (11%)
Query: 34 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT 93
I QQR+ LP+ + ++ + ++IVGETG GK+TQ+PQ+L AG+ +G+++GVT
Sbjct: 47 IEQQRQKLPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVT 106
Query: 94 QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST-STRIK---------EALLDPY 143
QPRRVAAVTVA RVAEE G LG VGY IRFDD T +TRIK E ++DP
Sbjct: 107 QPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPL 166
Query: 144 LSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDT 203
L++YS I++DEAHERT++TD+ +GLLKK+Q R
Sbjct: 167 LTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGD------------------------- 201
Query: 204 NGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG----------CAKAVHVQGRQFPV 253
L+LI+ SA+LDA F ++F + V GR FPV
Sbjct: 202 ----------------LRLIVASATLDADKFRDFFNQNETSDPARDTCVILTVGGRTFPV 245
Query: 254 EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLV--QERLLQLPE 311
+I Y P PDY+ +T+ T+ ++H E GDIL FLTGQEE+E+V ++ Q R L
Sbjct: 246 DIFYLQSPVPDYIKSTVETVVKIHQTEGDGDILAFLTGQEEVETVVSMLIEQARALARTG 305
Query: 312 ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 371
R L +P+++ LPS +QM+VF + RKVI+ATN+AETS+TI GI YVID GFVK
Sbjct: 306 MKRHLRVLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKL 365
Query: 372 RLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRC 431
R Y+P +E L+VVP+S+A A QR+GR GR GKC+RLY E FDKL ST PE++R
Sbjct: 366 RAYNPRTAIECLVVVPVSQASANQRAGRGGRSRSGKCYRLYTEEAFDKLPQSTVPEMQRS 425
Query: 432 NLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMAR 491
NL+ VILQLKALG+D+++ F FM P S++++LE L+ LG L DC+L++P+G ++A
Sbjct: 426 NLAPVILQLKALGIDNVLRFHFMSPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAE 485
Query: 492 LPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRGKKCNEIF 544
PL+P+++K L+ +G F C +E+L AM+ +++IF P + + + + F
Sbjct: 486 FPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNIFVVPPNQKSQAIRVHRKF 538
>sp|Q10752|CDC28_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
cdc28 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cdc28 PE=3 SV=2
Length = 1055
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/525 (45%), Positives = 334/525 (63%), Gaps = 63/525 (12%)
Query: 38 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 97
RKSLP+ + L++ + + +L+IV ETGSGKTTQLPQFL AG+ + K I TQPRR
Sbjct: 415 RKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKGNKKICCTQPRR 474
Query: 98 VAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYS 148
VAA++VA RVA+E V LGQ VGYSIRF++ TS T IK E L +P L+ YS
Sbjct: 475 VAAMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLREFLTEPDLASYS 534
Query: 149 AIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINT 208
II+DEAHERT+HTD+L GL+K +
Sbjct: 535 VIIIDEAHERTLHTDILFGLVKDIA----------------------------------- 559
Query: 209 LKQCQGRKFAP-LKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLD 267
+F P LK++I SA++DA FS YF A +V GR++PV+I YT PE +Y+
Sbjct: 560 -------RFRPDLKVLISSATIDAEKFSAYFDEAPVFYVPGRRYPVDIYYTPQPEANYIQ 612
Query: 268 ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQE--RLL--QLPEASRKLVTVPIFS 323
A + TI Q+H + GDILVFLTGQ+EIE + +QE R+L ++PE ++ PI++
Sbjct: 613 AAITTILQIHTTQPAGDILVFLTGQDEIELMSENMQELCRILGKRIPE----IILCPIYA 668
Query: 324 SLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESL 383
+LPSE Q ++F P G RKV+LATNIAETS+TI G+ +VID GFVK +Y+P GMESL
Sbjct: 669 NLPSELQAKIFDPTPPGARKVVLATNIAETSITIDGVNFVIDSGFVKQNMYNPRTGMESL 728
Query: 384 LVVPISKAQALQRSGRAGREGPGKCFRLYPENEF-DKLEDSTKPEIKRCNLSNVILQLKA 442
+ VP S+A A QR+GRAGR GPGKCFRLY + ++L+ T PEI+R NL+N++L LK+
Sbjct: 729 VSVPCSRASADQRAGRAGRVGPGKCFRLYTRRTYNNELDMVTSPEIQRTNLTNIVLLLKS 788
Query: 443 LGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKAL 502
LG+++++ FDFM+ P ++++SLE L+ LGAL + +L+ +G QMA P DP+ SK+L
Sbjct: 789 LGINNLLDFDFMDAPPPETLMRSLELLYALGALNNRGELTK-LGRQMAEFPTDPMLSKSL 847
Query: 503 IVAGQFNCLEEMLITVAML-SVESIFFRSPGEVRRGKKCNEIFCK 546
I + ++ C+EE+L V+ML S+F+R ++ K F +
Sbjct: 848 IASSKYGCVEEVLSIVSMLGEASSLFYRPKDKIMEADKARANFTQ 892
>sp|Q17R09|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos
taurus GN=DHX38 PE=2 SV=1
Length = 1227
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/527 (45%), Positives = 334/527 (63%), Gaps = 54/527 (10%)
Query: 29 SRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK 88
++++ IL+QR+ LPI +V++ L+ +R N I+I+VGETGSGKTTQL Q+L G+ D
Sbjct: 520 AKKKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYT-DYG 578
Query: 89 LIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EAL 139
+IG TQPRRVAA++VAKRV+EE G LG+ VGY+IRF+D TS ST IK E+L
Sbjct: 579 MIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSESTLIKYMTDGILLRESL 638
Query: 140 LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDR 199
+ L YSAII+DEAHER+++TDVL GLL++V RS
Sbjct: 639 READLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSD--------------------- 677
Query: 200 GNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTL 259
LKLI+ SA++DA F+ +FG H+ GR FPV+IL++
Sbjct: 678 --------------------LKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDILFSK 717
Query: 260 YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 319
P+ DY++A + QVHL APGDIL+F+ GQE+IE + E L +L E + L +
Sbjct: 718 TPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEEL-ENAPALAVL 776
Query: 320 PIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKG 379
PI+S LPS+ Q ++F A G RK I+ATNIAETS+T+ GI +VID G+ K ++++P G
Sbjct: 777 PIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIG 836
Query: 380 MESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF-DKLEDSTKPEIKRCNLSNVIL 438
M++L + PIS+A A QRSGRAGR GPG+CFRLY ++ + ++L +T PEI+R NL+NV+L
Sbjct: 837 MDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVL 896
Query: 439 QLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIY 498
LK+LGV D++ F FM+ P +++ S+ QL++LGAL + L+ G M PLDP
Sbjct: 897 LLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTS-TGRLMVEFPLDPAL 955
Query: 499 SKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRGKKCNEIFC 545
SK LIV+ C E+L+ V+MLSV +IF+R G + E F
Sbjct: 956 SKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFA 1002
>sp|Q92620|PRP16_HUMAN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo
sapiens GN=DHX38 PE=1 SV=2
Length = 1227
Score = 436 bits (1120), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/527 (44%), Positives = 334/527 (63%), Gaps = 54/527 (10%)
Query: 29 SRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK 88
++++ IL+QR+ LPI +V++ L+ +R N I+I+VGETGSGKTTQL Q+L G+ D
Sbjct: 520 AKKKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYT-DYG 578
Query: 89 LIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EAL 139
+IG TQPRRVAA++VAKRV+EE G LG+ VGY+IRF+D TS +T IK E+L
Sbjct: 579 MIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESL 638
Query: 140 LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDR 199
+ L YSAII+DEAHER+++TDVL GLL++V RS
Sbjct: 639 READLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSD--------------------- 677
Query: 200 GNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTL 259
LKLI+ SA++DA F+ +FG H+ GR FPV+IL++
Sbjct: 678 --------------------LKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSK 717
Query: 260 YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 319
P+ DY++A + QVHL APGDIL+F+ GQE+IE + E L +L E + L +
Sbjct: 718 TPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEEL-ENAPALAVL 776
Query: 320 PIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKG 379
PI+S LPS+ Q ++F A G RK I+ATNIAETS+T+ GI +VID G+ K ++++P G
Sbjct: 777 PIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIG 836
Query: 380 MESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF-DKLEDSTKPEIKRCNLSNVIL 438
M++L + PIS+A A QRSGRAGR GPG+CFRLY ++ + ++L +T PEI+R NL+NV+L
Sbjct: 837 MDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVL 896
Query: 439 QLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIY 498
LK+LGV D++ F FM+ P +++ S+ QL++LGAL + L+ G M PLDP
Sbjct: 897 LLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTS-TGRLMVEFPLDPAL 955
Query: 499 SKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRGKKCNEIFC 545
SK LIV+ C E+L+ V+MLSV +IF+R G + E F
Sbjct: 956 SKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFA 1002
>sp|O22899|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1
Length = 729
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 244/532 (45%), Positives = 324/532 (60%), Gaps = 65/532 (12%)
Query: 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDG 87
S R +IL++R+ LP+ + + + N LI+VGETGSGKTTQ+PQF+ A +
Sbjct: 52 SQRYFEILEKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNS 111
Query: 88 K-----LIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK------ 136
L+G TQPRRVAA++V++RVA+E V +G+ VGYSIRF+D TS+ T +K
Sbjct: 112 DKGRKWLVGCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGM 171
Query: 137 ---EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENS 193
EA+ DP L RY II+DEAHERT+ TDVL GLLK+V R
Sbjct: 172 LLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPD--------------- 216
Query: 194 DMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPV 253
LKL++MSA+L+A F EYF A + V GR PV
Sbjct: 217 --------------------------LKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHPV 250
Query: 254 EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEAS 313
EI YT PE DYL+A + T+ Q+H+ E PGDILVFLTG+EEIE R + + + L +
Sbjct: 251 EIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVSNLGDQV 310
Query: 314 RKLVTVPIFSSLPSEQQMRVFAPAAAGF-------RKVILATNIAETSVTIPGIKYVIDP 366
+ VP++S+LP Q ++F PA RK++++TNIAETS+TI GI YVIDP
Sbjct: 311 GPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTIDGIVYVIDP 370
Query: 367 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LEDSTK 425
GF K ++Y+P +ESLLV PISKA A QRSGRAGR PGKCFRLY E F+ L+ T
Sbjct: 371 GFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTY 430
Query: 426 PEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPV 485
PEI R NL+N +L LK LG+DD++ FDFM+ P+ +++++LE L LGAL D+ L+
Sbjct: 431 PEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTK-T 489
Query: 486 GHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRG 537
G M+ PLDP SK LIV+ +FNC E+L AMLSV + F R P E ++
Sbjct: 490 GEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVR-PREAQKA 540
>sp|Q9P774|PRP16_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp16 PE=3 SV=2
Length = 1173
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/526 (43%), Positives = 338/526 (64%), Gaps = 54/526 (10%)
Query: 29 SRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK 88
+R + +QR+ LP +V ++L+ +R N +LI+VGETGSGKTTQL QFL+ G+ R+G
Sbjct: 480 ARTKSYREQREFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYEDGYHRNG- 538
Query: 89 LIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EAL 139
+IG TQPRRVAA++VAKRV+EE GV LG VGYSIRF+D T T IK E+L
Sbjct: 539 MIGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTDGVLLRESL 598
Query: 140 LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDR 199
+ L +YS II+DEAHER+++TD+L+GLLKKV L R
Sbjct: 599 MQNNLEKYSVIIMDEAHERSLNTDILMGLLKKV------------------------LSR 634
Query: 200 GNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTL 259
D +KL++ SA+++++ FS++FG A + GR +PV+I++
Sbjct: 635 RRD-----------------IKLLVTSATMNSQKFSDFFGGAPQFTIPGRTYPVDIMFAK 677
Query: 260 YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 319
P DY++A + + Q+HL + GDILVF+TGQE+IE+ ++ +RL QL +A R L +
Sbjct: 678 APCSDYVEAAVRQVLQIHLSQPAGDILVFMTGQEDIEATCEIIADRLNQLHDAPR-LSIL 736
Query: 320 PIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKG 379
PI+S +P++ Q ++F A G RKV++ATNIAETS+T+ GI YV+D G+ K ++Y+ G
Sbjct: 737 PIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVHGISYVVDTGYCKLKMYNSKLG 796
Query: 380 MESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF-DKLEDSTKPEIKRCNLSNVIL 438
+++L V PIS+A A QR+GRAGR GPG +RLY E + ++ ++T PEI+R NLSN +L
Sbjct: 797 IDTLQVTPISQANANQRAGRAGRTGPGIAYRLYTEMAYIREMFETTLPEIQRTNLSNTVL 856
Query: 439 QLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIY 498
LK+LGV++I FDFM++P +++ SL +L+ LGAL + KL+ +G +M+ P+DP
Sbjct: 857 ILKSLGVEEISDFDFMDRPPNDTLMASLYELWTLGALDNFGKLT-TLGKKMSLFPMDPSL 915
Query: 499 SKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRGKKCNEIF 544
SK +I+A + C EE++ V+MLSV S+F+R E F
Sbjct: 916 SKLIIIAEDYKCTEEIITIVSMLSVPSVFYRPKERAEESDAAREKF 961
>sp|Q54NJ4|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15
OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1
Length = 727
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 239/516 (46%), Positives = 325/516 (62%), Gaps = 64/516 (12%)
Query: 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDG 87
S R +IL++RK LP+ ++ ++ +++N ++I+VGETGSGKTTQ+PQF+ AG R G
Sbjct: 64 SKRYYEILEKRKELPVWKQKEDFIKVIKENQVVILVGETGSGKTTQIPQFVVDAGLIRPG 123
Query: 88 KLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EA 138
K++GVTQPRRVAA++VAKRV+EE ELG+ VGYSIRF++ +S T +K E+
Sbjct: 124 KMVGVTQPRRVAAISVAKRVSEEMDFELGEEVGYSIRFEELSSARTFMKYLTDGMLLRES 183
Query: 139 LLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILD 198
+ DP L++Y II+DEAHERT+ TD+L GL+K IL
Sbjct: 184 MSDPTLNKYDVIILDEAHERTLSTDILFGLIKD------------------------ILK 219
Query: 199 RGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYT 258
R D LKLI+MSA+L+A F +YF A + V GR PVEI YT
Sbjct: 220 RRKD-----------------LKLIVMSATLEAGKFQKYFENAPLIKVPGRLHPVEIFYT 262
Query: 259 LYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIES----VERLVQERLLQLPEASR 314
DYL++ + T+ +H +E GDILVFLTG+EEIE ++R +ER LP
Sbjct: 263 EEAAKDYLESAVRTVIDIHTNEGTGDILVFLTGEEEIEDTCAKIQRETRER--GLP---- 316
Query: 315 KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLY 374
+ T+P++SSLP QQ ++F RK I++TNIAETS+TI GI +V+DPGF K + Y
Sbjct: 317 PMKTLPLYSSLPIYQQSKIFDTCKE--RKCIVSTNIAETSLTIDGIVFVVDPGFSKQKTY 374
Query: 375 DPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLE-DSTKPEIKRCNL 433
+P +ESLLV PISKA A QR+GRAGR PGKCFRLY E F +L T PEI R NL
Sbjct: 375 NPRSRVESLLVAPISKASANQRAGRAGRTRPGKCFRLYTEKAFKELMIQQTHPEILRSNL 434
Query: 434 SNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLP 493
++V+LQL LGV D++ FDFM+ P ++I++LE L LGAL D+ +L++ +G M+ P
Sbjct: 435 ASVVLQLLKLGVVDLVHFDFMDPPVPDTLIRALEVLHYLGALDDEGQLTE-IGSIMSEFP 493
Query: 494 LDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFR 529
LDP SK LIV+ + +C E+L AMLS + F R
Sbjct: 494 LDPQLSKMLIVSAERSCSNEILTIAAMLSAPNCFMR 529
>sp|P20095|PRP2_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
PRP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PRP2 PE=1 SV=1
Length = 876
Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/505 (45%), Positives = 314/505 (62%), Gaps = 59/505 (11%)
Query: 34 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKL-IGV 92
I + RK LP+ + L++E++KN +LII+GETGSGKTTQLPQ+L GF GKL I +
Sbjct: 216 IQEARKLLPVHQYKDELLQEIKKNQVLIIMGETGSGKTTQLPQYLVEDGFTDQGKLQIAI 275
Query: 93 TQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI----------KEALLDP 142
TQPRRVAA +VA RVA+E V LG+ VGY IRF+D+T+ + + +E L D
Sbjct: 276 TQPRRVAATSVAARVADEMNVVLGKEVGYQIRFEDKTTPNKTVLKYMTDGMLLREFLTDS 335
Query: 143 YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGND 202
LS+YS I++DEAHERT+ TD+L+GLLK + R
Sbjct: 336 KLSKYSCIMIDEAHERTLATDILIGLLKDILPQR-------------------------- 369
Query: 203 TNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPE 262
LKL+I SA+++A+ FSE+F +V GR++PV+I YTL PE
Sbjct: 370 ---------------PTLKLLISSATMNAKKFSEFFDNCPIFNVPGRRYPVDIHYTLQPE 414
Query: 263 PDYLDATLITIFQVHLDEA-PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI 321
+Y+ A + TIFQ+H ++ PGDILVFLTGQEEIE + ++E + +L +++++ PI
Sbjct: 415 ANYIHAAITTIFQIHTTQSLPGDILVFLTGQEEIERTKTKLEEIMSKLGSRTKQMIITPI 474
Query: 322 FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGME 381
+++LP EQQ+++F P RKV+LATNIAETS+TI GI+YVIDPGFVK Y P GM
Sbjct: 475 YANLPQEQQLKIFQPTPENCRKVVLATNIAETSLTIDGIRYVIDPGFVKENSYVPSTGMT 534
Query: 382 SLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF-DKLEDSTKPEIKRCNLSNVILQL 440
LL VP S+A QR+GRAGR GPGKCFR++ + + +LE KPEI R NLSN +L L
Sbjct: 535 QLLTVPCSRASVDQRAGRAGRVGPGKCFRIFTKWSYLHELELMPKPEITRTNLSNTVLLL 594
Query: 441 KALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSK 500
+LGV D+I F M+KPS ++ KSLE L++LGAL ++ +G M P +P ++K
Sbjct: 595 LSLGVTDLIKFPLMDKPSIPTLRKSLENLYILGALNSKGTITR-LGKMMCEFPCEPEFAK 653
Query: 501 ALIVAGQFN----CLEEMLITVAML 521
L A LEE L V+ML
Sbjct: 654 VLYTAATHEQCQGVLEECLTIVSML 678
>sp|O42945|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp43 PE=3 SV=1
Length = 735
Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust.
Identities = 239/534 (44%), Positives = 328/534 (61%), Gaps = 63/534 (11%)
Query: 23 FFNDS--SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 80
FFND S KIL+ R+ LP+ + ++ +N I++ VGETGSGKTTQ+PQF+ +
Sbjct: 55 FFNDKPFSQNYFKILETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLY 114
Query: 81 AGFCR-DGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK--- 136
I TQPRRVAA++VAKRVA+E V+LG+ VGY+IRF+D + +T +K
Sbjct: 115 DELPHLTNTQIACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLLKYMT 174
Query: 137 ------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNN 190
EA+ D LSRYS II+DEAHERT+ TD+L+GL+K++ R
Sbjct: 175 DGMLLREAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLATRRPD------------ 222
Query: 191 ENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQ 250
LK+I+MSA+LDA+ F +YF A + V GR
Sbjct: 223 -----------------------------LKIIVMSATLDAKKFQKYFFDAPLLAVPGRT 253
Query: 251 FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP 310
+PVEI YT PE DYL+A L T+ Q+H++E PGDILVFLTG+EEIE R + L
Sbjct: 254 YPVEIYYTQEPERDYLEAALRTVLQIHVEEGPGDILVFLTGEEEIEDACRKITLEADDLV 313
Query: 311 E--ASRKLVTVPIFSSLPSEQQMRVFAPA----AAGF-RKVILATNIAETSVTIPGIKYV 363
A+ L P++ SLP QQ R+F P +G+ RKV+++TNIAETS+TI GI YV
Sbjct: 314 REGAAGPLKVYPLYGSLPPNQQQRIFEPTPEDTKSGYGRKVVISTNIAETSLTIDGIVYV 373
Query: 364 IDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LED 422
+DPGF K ++Y+P +ESLLV PISKA A QR+GRAGR PGKCFRLY E F K L +
Sbjct: 374 VDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFRKELIE 433
Query: 423 STKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLS 482
T PEI R NLS+ +L+LK LG+DD++ FD+M+ P+ +++++LE+L L L D+ L+
Sbjct: 434 QTYPEILRSNLSSTVLELKKLGIDDLVHFDYMDPPAPETMMRALEELNYLNCLDDNGDLT 493
Query: 483 DPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRR 536
P+G + + PLDP + LI + +F C E+L A+LSV ++F R P R+
Sbjct: 494 -PLGRKASEFPLDPNLAVMLIRSPEFYCSNEVLSLTALLSVPNVFVR-PNSARK 545
>sp|P53131|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP43 PE=1 SV=1
Length = 767
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 236/530 (44%), Positives = 321/530 (60%), Gaps = 60/530 (11%)
Query: 34 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQF-LFHAGFCRDGKLIGV 92
IL+ R+ LP+ + ++ + N I++ VGETGSGKTTQ+PQF LF + +
Sbjct: 86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVAC 145
Query: 93 TQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPY 143
TQPRRVAA++VA+RVAEE V+LG+ VGYSIRF+++TS T +K EA+ D
Sbjct: 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHD 205
Query: 144 LSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDT 203
LSRYS II+DEAHERT+ TD+L+GLLK+V R
Sbjct: 206 LSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD------------------------- 240
Query: 204 NGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP 263
LK+IIMSA+LDA F YF A + V GR +PVE+ YT +
Sbjct: 241 ----------------LKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQR 284
Query: 264 DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL--PEASRKLVTVPI 321
DYLD+ + T+ Q+H E GDIL+FLTG++EIE R + QL E L P+
Sbjct: 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPL 344
Query: 322 FSSLPSEQQMRVFAPAAAGF-----RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 376
+ SLP QQ R+F PA RKV+++TNIAETS+TI GI YV+DPGF K ++Y+P
Sbjct: 345 YGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNP 404
Query: 377 VKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LEDSTKPEIKRCNLSN 435
+ESLLV PISKA A QR+GRAGR PGKCFRLY E F K L + + PEI R NLS+
Sbjct: 405 RIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSS 464
Query: 436 VILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLD 495
+L+LK LG+DD++ FDFM+ P+ +++++LE+L L L D+ L+ P+G ++ PLD
Sbjct: 465 TVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLT-PLGRLASQFPLD 523
Query: 496 PIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRGKKCNEIFC 545
P+ + LI + +F C +E+L VAMLSV ++F R + +R IF
Sbjct: 524 PMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFA 573
>sp|Q9BKQ8|DHX35_CAEEL Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis
elegans GN=Y67D2.6 PE=3 SV=1
Length = 732
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/578 (40%), Positives = 327/578 (56%), Gaps = 88/578 (15%)
Query: 17 KLHSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQ 76
K+H+ P+ + I QQR LPI ++ + +IIVGETG GK+TQ+PQ
Sbjct: 59 KVHNNPYAS------LNIQQQRIRLPIFKNRGHILYMCERYRTIIIVGETGCGKSTQVPQ 112
Query: 77 FLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK 136
FL AG+ DG+ I +TQPRRVA VT+A RVAEE LG VGY++RFDD + T++K
Sbjct: 113 FLLEAGWAADGRQIVITQPRRVAVVTLATRVAEEKDCILGHDVGYTVRFDDVSDKDTKVK 172
Query: 137 ---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 187
E L DP LS+YS I++DEAHER+ +TD+LLGLL+K+ R
Sbjct: 173 FMTDGLLLREILADPLLSKYSIIMIDEAHERSCNTDILLGLLRKIIQIR----------- 221
Query: 188 NNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYF--------- 238
ND L++I+ SA+LDA F ++F
Sbjct: 222 -------------ND-----------------LRIIVSSATLDAELFKDFFEMNETGNSD 251
Query: 239 -GCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIES 297
A + V+GR PV + +T PDY + + T+ +H E PGDILVFLTGQ+E+E
Sbjct: 252 KDTAGIISVEGRTHPVAVHHTKTSVPDYCQSAVDTVINIHKHENPGDILVFLTGQDEVED 311
Query: 298 VERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTI 357
V ++E L R L VP + +LP+ +QM+ F G RKV++ATNIAE S+TI
Sbjct: 312 VCEKLRELAGNLKNCDR-LWVVPCYGALPAREQMKAFDSTPHGTRKVVVATNIAEASITI 370
Query: 358 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF 417
PGI YVID G+VK R G+E+L+ V +SKA A QR+GRAGR PGKC+RLYPE+EF
Sbjct: 371 PGICYVIDTGYVKLRAQHAANGVETLMRVTVSKASAEQRAGRAGRIRPGKCYRLYPESEF 430
Query: 418 DKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTD 477
++ + T PEI+RC +++ ILQLKALGV ++ F ++ P ++I LE L+ LGA+ +
Sbjct: 431 ERFAEGTVPEIQRCQMASTILQLKALGVQNVHRFHYLSPPPSWAMINGLELLYALGAIDE 490
Query: 478 DCKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFF-----RSPG 532
+L+ P+G QMA PL P++SK L+ + +F C EM+ VAM+ ++ +F R
Sbjct: 491 TSQLTSPLGLQMAEFPLPPMHSKCLLKSAEFGCSTEMVTIVAMMQIQDVFITPYRQRHQA 550
Query: 533 EVRRGKKCNE---------IFCK-------SRWRSPHF 554
+V R K E +F K +W S HF
Sbjct: 551 DVIRKKFAVEEGDHMTMLNVFTKFVENGRSKKWCSDHF 588
>sp|Q20875|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1
Length = 739
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 232/546 (42%), Positives = 324/546 (59%), Gaps = 68/546 (12%)
Query: 15 NPKLHSKPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQ 73
N K+ P+ N S+R I ++R LP+ +++ +E +R N + +VGETGSGKTTQ
Sbjct: 49 NMKIQINPYNNQPFSNRYWAIWEKRSQLPVWEYKEKFMELLRNNQCITLVGETGSGKTTQ 108
Query: 74 LPQFLFH-------AGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFD 126
+PQ+ +L+ TQPRRVAA++VA RVAEE V LGQ VGYSIRF+
Sbjct: 109 IPQWAVEFMKQQQQGQPPGQARLVACTQPRRVAAMSVATRVAEEMDVVLGQEVGYSIRFE 168
Query: 127 DRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 177
D S T +K EA+ P L +Y +I+DEAHERT+ TD+L+GL+K++ R
Sbjct: 169 DCISERTVLKYCTDGMLLREAMNSPLLDKYKVLILDEAHERTLATDILMGLIKEIVRNR- 227
Query: 178 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEY 237
A +K++IMSA+LDA F Y
Sbjct: 228 ----------------------------------------ADIKVVIMSATLDAGKFQRY 247
Query: 238 FGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHL-DEAPGDILVFLTGQEEIE 296
F + V GR FPVEI +T E DYL+A + T+ Q+H+ +E GDIL+FLTGQEEIE
Sbjct: 248 FEDCPLLSVPGRTFPVEIFFTPNAEKDYLEAAIRTVIQIHMVEEVEGDILLFLTGQEEIE 307
Query: 297 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPA------AAGFRKVILATNI 350
+ + + L + L +P++S+LP Q R+F PA A RK +++TNI
Sbjct: 308 EACKRIDREIQALGADAGALSCIPLYSTLPPAAQQRIFEPAPPNRPNGAISRKCVISTNI 367
Query: 351 AETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFR 410
AETS+TI G+ +VIDPGF K ++Y+P +ESLLV PISKA A+QR+GRAGR PGKCFR
Sbjct: 368 AETSLTIDGVVFVIDPGFSKQKVYNPRIRVESLLVCPISKASAMQRAGRAGRTKPGKCFR 427
Query: 411 LYPENEF-DKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQL 469
LY E + +++D T PEI R NL +V+LQLK LG +D++ FDFM+ P+ +++++LE L
Sbjct: 428 LYTETAYGSEMQDQTYPEILRSNLGSVVLQLKKLGTEDLVHFDFMDPPAPETLMRALELL 487
Query: 470 FLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFR 529
L A+ DD +L++ +G MA PLDP +K LI + + NC E+L AMLSV + R
Sbjct: 488 NYLQAINDDGELTE-LGSLMAEFPLDPQLAKMLITSTELNCSNEILSITAMLSVPQCWVR 546
Query: 530 SPGEVR 535
P E+R
Sbjct: 547 -PNEMR 551
>sp|Q5RAZ4|DHX15_PONAB Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Pongo abelii GN=DHX15 PE=2 SV=2
Length = 795
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/536 (43%), Positives = 323/536 (60%), Gaps = 63/536 (11%)
Query: 22 PFFN-DSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 80
PF N + R IL++R LP+ + R + + ++ ++VGETGSGKTTQ+PQ+
Sbjct: 117 PFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVE 176
Query: 81 AGFCRDGKLIGV--TQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK-- 136
G GV TQPRRVAA++VA+RVA+E V LGQ VGYSIRF+D +S T +K
Sbjct: 177 YMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYM 236
Query: 137 -------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNN 189
EA+ DP L RY II+DEAHERT+ TD+L+G+LK+V RS
Sbjct: 237 TDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSD----------- 285
Query: 190 NENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGR 249
LK+I+MSA+LDA F YF + + GR
Sbjct: 286 ------------------------------LKVIVMSATLDAGKFQIYFDNCPLLTIPGR 315
Query: 250 QFPVEILYTLYPEPDYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQ 308
PVEI YT PE DYL+A + T+ Q+H+ +E GD+L+FLTGQEEI+ + ++ +
Sbjct: 316 THPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREVDD 375
Query: 309 LPEASRKLVTVPIFSSLPSEQQMRVFAPA------AAGFRKVILATNIAETSVTIPGIKY 362
L + +P++S+LP +QQ R+F P A RKV+++TNIAETS+TI G+ +
Sbjct: 376 LGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVF 435
Query: 363 VIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD-KLE 421
VIDPGF K ++Y+P +ESLLV ISKA A QR+GRAGR PGKCFRLY E + +++
Sbjct: 436 VIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQ 495
Query: 422 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKL 481
D+T PEI R NL +V+LQLK LG+DD++ FDFM+ P+ +++++LE L L AL DD L
Sbjct: 496 DNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDL 555
Query: 482 SDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRG 537
++ +G MA PLDP +K +I + +NC E+L AMLSV F R P E ++
Sbjct: 556 TE-LGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVR-PTEAKKA 609
>sp|O35286|DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Mus musculus GN=Dhx15 PE=2 SV=2
Length = 795
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/536 (43%), Positives = 323/536 (60%), Gaps = 63/536 (11%)
Query: 22 PFFN-DSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 80
PF N + R IL++R LP+ + R + + ++ ++VGETGSGKTTQ+PQ+
Sbjct: 117 PFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVE 176
Query: 81 AGFCRDGKLIGV--TQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK-- 136
G GV TQPRRVAA++VA+RVA+E V LGQ VGYSIRF+D +S T +K
Sbjct: 177 YMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYM 236
Query: 137 -------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNN 189
EA+ DP L RY II+DEAHERT+ TD+L+G+LK+V RS
Sbjct: 237 TDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSD----------- 285
Query: 190 NENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGR 249
LK+I+MSA+LDA F YF + + GR
Sbjct: 286 ------------------------------LKVIVMSATLDAGKFQIYFDNCPLLTIPGR 315
Query: 250 QFPVEILYTLYPEPDYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQ 308
PVEI YT PE DYL+A + T+ Q+H+ +E GD+L+FLTGQEEI+ + ++ +
Sbjct: 316 THPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREVDD 375
Query: 309 LPEASRKLVTVPIFSSLPSEQQMRVFAPA------AAGFRKVILATNIAETSVTIPGIKY 362
L + +P++S+LP +QQ R+F P A RKV+++TNIAETS+TI G+ +
Sbjct: 376 LGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVF 435
Query: 363 VIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD-KLE 421
VIDPGF K ++Y+P +ESLLV ISKA A QR+GRAGR PGKCFRLY E + +++
Sbjct: 436 VIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQ 495
Query: 422 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKL 481
D+T PEI R NL +V+LQLK LG+DD++ FDFM+ P+ +++++LE L L AL DD L
Sbjct: 496 DNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDL 555
Query: 482 SDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRG 537
++ +G MA PLDP +K +I + +NC E+L AMLSV F R P E ++
Sbjct: 556 TE-LGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVR-PTEAKKA 609
>sp|O43143|DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Homo sapiens GN=DHX15 PE=1 SV=2
Length = 795
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/536 (43%), Positives = 323/536 (60%), Gaps = 63/536 (11%)
Query: 22 PFFN-DSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 80
PF N + R IL++R LP+ + R + + ++ ++VGETGSGKTTQ+PQ+
Sbjct: 117 PFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVE 176
Query: 81 AGFCRDGKLIGV--TQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK-- 136
G GV TQPRRVAA++VA+RVA+E V LGQ VGYSIRF+D +S T +K
Sbjct: 177 YMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYM 236
Query: 137 -------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNN 189
EA+ DP L RY II+DEAHERT+ TD+L+G+LK+V RS
Sbjct: 237 TDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSD----------- 285
Query: 190 NENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGR 249
LK+I+MSA+LDA F YF + + GR
Sbjct: 286 ------------------------------LKVIVMSATLDAGKFQIYFDNCPLLTIPGR 315
Query: 250 QFPVEILYTLYPEPDYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQ 308
PVEI YT PE DYL+A + T+ Q+H+ +E GD+L+FLTGQEEI+ + ++ +
Sbjct: 316 THPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREVDD 375
Query: 309 LPEASRKLVTVPIFSSLPSEQQMRVFAPA------AAGFRKVILATNIAETSVTIPGIKY 362
L + +P++S+LP +QQ R+F P A RKV+++TNIAETS+TI G+ +
Sbjct: 376 LGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVF 435
Query: 363 VIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD-KLE 421
VIDPGF K ++Y+P +ESLLV ISKA A QR+GRAGR PGKCFRLY E + +++
Sbjct: 436 VIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQ 495
Query: 422 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKL 481
D+T PEI R NL +V+LQLK LG+DD++ FDFM+ P+ +++++LE L L AL DD L
Sbjct: 496 DNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDL 555
Query: 482 SDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRG 537
++ +G MA PLDP +K +I + +NC E+L AMLSV F R P E ++
Sbjct: 556 TE-LGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVR-PTEAKKA 609
>sp|P15938|PRP16_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP16 PE=1 SV=2
Length = 1071
Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust.
Identities = 226/525 (43%), Positives = 325/525 (61%), Gaps = 70/525 (13%)
Query: 31 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-GKL 89
+ I ++ LP+ +L+ +R+N +++I+GETGSGKTTQL Q+L+ G+ D GK
Sbjct: 340 KDDIKHTKEQLPVFRCRSQLLSLIRENQVVVIIGETGSGKTTQLAQYLYEEGYANDRGKS 399
Query: 90 IGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRT-STSTRIK---------EAL 139
I VTQPRRVAA++VAKRVA E V LG+ VGYSIRF+D T S T++K E L
Sbjct: 400 IVVTQPRRVAAISVAKRVAMEMQVPLGKEVGYSIRFEDVTDSECTKLKFVTDGILLRETL 459
Query: 140 LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDR 199
LD L +YS +I+DEAHER+++TD+LLG K ++L R
Sbjct: 460 LDDTLDKYSCVIIDEAHERSLNTDILLGFFK------------------------ILLAR 495
Query: 200 GNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTL 259
D LKLII SA+++A+ FS +FG A + GR FPV+ +YT
Sbjct: 496 RRD-----------------LKLIITSATMNAKKFSAFFGNAPQFTIPGRTFPVQTIYTS 538
Query: 260 YPEPDYLDATLITIFQVHL--DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLV 317
P DY++A + ++HL D + GDIL+F+TGQE+IE+ +QE+ LQ+ S+K
Sbjct: 539 NPVQDYVEAAVSQAVKIHLANDCSSGDILIFMTGQEDIETTFDTLQEKFLQV--YSKKFG 596
Query: 318 T-----------VPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDP 366
T +PI+S+LP++ Q ++F RK+I+ATNIAETS+TI GI+YVID
Sbjct: 597 TANFEEINDIEILPIYSALPADLQFKIFQDLHGTKRKIIIATNIAETSLTIKGIRYVIDC 656
Query: 367 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF-DKLEDSTK 425
G+ K ++Y+P G++SL++ PISKA A QRSGRAGR PG +RLY E+ F + + T
Sbjct: 657 GYSKLKVYNPKIGLDSLVITPISKANADQRSGRAGRTAPGTAYRLYTEDTFKEDMYLQTI 716
Query: 426 PEIKRCNLSNVILQLKALGV-DDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDP 484
PEI+R NLSN +L LK+L V D++ F F++KP + + SL +L+ +GA+ +L+ P
Sbjct: 717 PEIQRTNLSNTLLLLKSLDVTDELSKFPFIDKPPLQTFLSSLYELWFIGAIDTSGQLT-P 775
Query: 485 VGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFR 529
+G QMA+ PL P SK L++A + C +EML V+MLSV +F+R
Sbjct: 776 LGLQMAKFPLQPSLSKILLIAVRNGCSDEMLTIVSMLSVPQVFYR 820
>sp|Q9HE06|YK99_SCHPO Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
C20H4.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPAC20H4.09 PE=3 SV=1
Length = 647
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/503 (39%), Positives = 295/503 (58%), Gaps = 52/503 (10%)
Query: 37 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 96
Q+K LPI +L+ V +N I I++G TG GKTTQ+PQFL+ AG+ +IG TQPR
Sbjct: 21 QKKLLPITKYRNQLLYAVEQNQITIVLGHTGCGKTTQIPQFLYEAGWASQNGIIGCTQPR 80
Query: 97 RVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRY 147
R+ A +V++RV+ E G GYSI+FD S T+IK E DP L RY
Sbjct: 81 RLVAKSVSERVSLELNSPPGSLCGYSIQFDHNVSEKTKIKYMTDGILLNEIFFDPLLERY 140
Query: 148 SAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGIN 207
S +I+DE HERT+ TD+LLG+LK+ IL++ ND
Sbjct: 141 SIVILDEVHERTLSTDLLLGVLKR------------------------ILEKRND----- 171
Query: 208 TLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAK--AVHVQGRQFPVEILYTLYPEPDY 265
+L++ SAS+DA S++FG K + ++G+ FPVE L+ P +Y
Sbjct: 172 ------------FRLVLSSASVDANKLSQFFGQDKVCTMSIEGKLFPVETLFLQKPTENY 219
Query: 266 LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 325
+D+ + T+ ++ PGDILVFL+G++EIE + +++ L+ E + LV +P+ + L
Sbjct: 220 VDSAIETVININSTYPPGDILVFLSGRKEIEYCIKKIEDSLIHASEDCQTLVPLPLHAGL 279
Query: 326 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLV 385
++QMRVF FRKVI +TNIAETS+TI GI YV+D GF K R+Y+P L+
Sbjct: 280 TVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYVVDSGFNKQRIYNPYTRTSKLIN 339
Query: 386 VPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSNVILQLKALGV 445
VPISK+ A+QRSGRAGR GK FRLY E + +++ + +I C++S ++L LK LG+
Sbjct: 340 VPISKSSAIQRSGRAGRTMRGKVFRLYTEKAYSLMKEEFEADILNCDMSPLVLFLKGLGL 399
Query: 446 DDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVA 505
+I+ F F +P ++ +LE L+LLG L + L+DP+G Q++ LD SKAL+ +
Sbjct: 400 KNILQFPFFVRPPTVHLMAALEDLYLLGVLDESGNLTDPLGIQISNSFLDANISKALLTS 459
Query: 506 GQFNCLEEMLITVAMLSVESIFF 528
QF C E+L ++L+ +F+
Sbjct: 460 NQFGCTHEILSIASILTAGEVFY 482
>sp|P36009|DHR2_YEAST Probable ATP-dependent RNA helicase DHR2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DHR2 PE=1
SV=1
Length = 735
Score = 362 bits (930), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 208/536 (38%), Positives = 315/536 (58%), Gaps = 59/536 (11%)
Query: 24 FNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF 83
+ SR +L+ R++LP+ ++ ++ + N + +++GETGSGK+TQ+PQF+ +
Sbjct: 64 YKSLKSRASDLLKMRETLPVYQHKREIMSYIESNPVTVLIGETGSGKSTQIPQFVLEKLY 123
Query: 84 -CRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK------ 136
+ I VTQPRRVAA+ +A RVA+E G +LG++VGYS+RFD+ T+T TR+K
Sbjct: 124 DTKKHGSIAVTQPRRVAAINLATRVAQEHGCKLGEQVGYSVRFDNTTTTRTRLKYLTDGM 183
Query: 137 ---EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENS 193
E +++ L YS I++DEAHERTV TD++LG LK +
Sbjct: 184 LLRELMMNSDLREYSVIVIDEAHERTVLTDLILGFLKSL--------------------- 222
Query: 194 DMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPV 253
QG + L++I+MSA+L A FSE+F A + V+GR+F V
Sbjct: 223 ------------------IQGPR-PDLRIIVMSATLQAEKFSEFFNNAPILFVEGRKFDV 263
Query: 254 EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEAS 313
+ Y P D +DA + Q++ E GDIL FL GQEEI+ ++++ + + +
Sbjct: 264 KQYYLKAPTDDIVDAVIRCCIQINQGEELGDILCFLPGQEEIDKAVTIMEKIAKYVSDEA 323
Query: 314 RK--LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 371
+V P++++LP+ QQ VFAP RKV+ +TNIAETSVTI G+K+V+D G K
Sbjct: 324 PVPLIVPYPLYAALPAVQQSLVFAPIKGFKRKVVFSTNIAETSVTISGVKFVVDSGLRKV 383
Query: 372 RLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRC 431
+++ G+ +LL VPIS+A A+QRSGRAGRE GK FRLY E+++ KL ++PEI R
Sbjct: 384 KVWRHQLGLATLLTVPISQASAMQRSGRAGRESEGKSFRLYCESDYVKLPKQSEPEIARS 443
Query: 432 NLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMAR 491
++++ +L LK GVDD++ + + E P + +I+ L++L+ LGAL K++ G QMA
Sbjct: 444 DVTSPVLMLKRYGVDDLLNWTWFENPGKEAIVMGLQELYELGALDTRGKITKR-GQQMAL 502
Query: 492 LPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFR-SPGE-----VRRGKKCN 541
LPL P S LI A + CL +++ V+ LSVE++ SP E RR CN
Sbjct: 503 LPLQPHLSSVLIKASEVGCLSQVIDIVSCLSVENLLLNPSPEERDEVNERRLSLCN 558
>sp|Q5XI69|DHX40_RAT Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus
GN=Dhx40 PE=2 SV=1
Length = 779
Score = 355 bits (910), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 207/517 (40%), Positives = 301/517 (58%), Gaps = 69/517 (13%)
Query: 40 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99
+ PI K+L++ VR N LI+ G TGSGKTTQLP++L+ AGF + G +IGVTQPR+VA
Sbjct: 52 TFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVA 110
Query: 100 AVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAI 150
A++VA+RVAEE LG +VGY +RFDD +S T IK L DP L+++S I
Sbjct: 111 AISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLNKFSVI 170
Query: 151 IVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLK 210
I+DEAHERT+ TD+L GLLKK+ +S + H
Sbjct: 171 ILDEAHERTLTTDILFGLLKKLFQDKSPNRKEH--------------------------- 203
Query: 211 QCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPV-EILYTLYPEPD----- 264
LK+++MSA+++ S +FG + GR +PV E L D
Sbjct: 204 ---------LKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTA 254
Query: 265 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK--------- 315
Y+ A + +HL+E GDILVFLTGQ EIE L L Q+ E+
Sbjct: 255 YIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCEL----LFQMAESVDYDYDVQDTTL 310
Query: 316 --LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARL 373
L+ +P + S+ ++QQ R+F P G RK +++TNI+ TS+TI GI+YV+D GFVK
Sbjct: 311 DGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLN 370
Query: 374 YDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LEDSTKPEIKRCN 432
++P G++ L VVPISK++ALQRSGRAGR GKCFR+Y ++ +++ + D PEIKR +
Sbjct: 371 HNPRLGLDILEVVPISKSEALQRSGRAGRTASGKCFRIYSKDFWNQCMPDHVIPEIKRTS 430
Query: 433 LSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARL 492
L++V+L LK L + D+I F +++ P+ I+++L+QL+ A+ ++ +G M
Sbjct: 431 LTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTR-LGLSMVEF 489
Query: 493 PLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFR 529
PL P + A+I A +C + +L AMLSVE++F R
Sbjct: 490 PLPPHLTCAVIRAASLDCEDLLLPIAAMLSVENVFIR 526
>sp|Q5R864|DHX40_PONAB Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40
PE=2 SV=1
Length = 779
Score = 355 bits (910), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 206/517 (39%), Positives = 301/517 (58%), Gaps = 69/517 (13%)
Query: 40 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99
+ PI K++++ VR N LI+ G TGSGKTTQLP++L+ AGF + G +IGVTQPR+VA
Sbjct: 52 TFPIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVA 110
Query: 100 AVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAI 150
A++VA+RVAEE LG +VGY +RFDD +S T IK L DP L+++S I
Sbjct: 111 AISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLTKFSVI 170
Query: 151 IVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLK 210
I+DEAHERT+ TD+L GLLKK+ +S + H
Sbjct: 171 ILDEAHERTLTTDILFGLLKKLFQEKSPNRKEH--------------------------- 203
Query: 211 QCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPV-EILYTLYPEPD----- 264
LK+++MSA+++ S +FG + GR +PV E L D
Sbjct: 204 ---------LKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTA 254
Query: 265 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK--------- 315
Y+ A + +HL+E GDILVFLTGQ EIE L L Q+ E+
Sbjct: 255 YIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCEL----LFQMAESVDYDYDVQDTTL 310
Query: 316 --LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARL 373
L+ +P + S+ ++QQ R+F P G RK +++TNI+ TS+TI GI+YV+D GFVK
Sbjct: 311 DGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLN 370
Query: 374 YDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LEDSTKPEIKRCN 432
++P G++ L VVPISK++ALQRSGRAGR GKCFR+Y ++ +++ + D PEIKR +
Sbjct: 371 HNPRLGLDILEVVPISKSEALQRSGRAGRTASGKCFRIYSKDFWNQCMPDHVIPEIKRTS 430
Query: 433 LSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARL 492
L++V+L LK L + D+I F +++ P+ I+++L+QL+ A+ ++ +G M
Sbjct: 431 LTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTR-LGLSMVEF 489
Query: 493 PLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFR 529
PL P + A+I A +C + +L AMLSVE++F R
Sbjct: 490 PLPPHLTCAVIKAASLDCEDLLLPIAAMLSVENVFIR 526
>sp|Q6PE54|DHX40_MOUSE Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40
PE=2 SV=1
Length = 779
Score = 355 bits (910), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 208/517 (40%), Positives = 299/517 (57%), Gaps = 69/517 (13%)
Query: 40 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99
+ PI K+L++ VR N LI+ G TGSGKTTQLP++L+ AGF + G +IGVTQPR+VA
Sbjct: 52 TFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVA 110
Query: 100 AVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAI 150
A++VA+RVAEE LG +VGY +RFDD +S T IK L DP LS++S I
Sbjct: 111 AISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLSKFSVI 170
Query: 151 IVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLK 210
I+DEAHERT+ TD+L GLLKK+ +S + H
Sbjct: 171 ILDEAHERTLTTDILFGLLKKLFQDKSPNRKEH--------------------------- 203
Query: 211 QCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPV-EILYTLYPEPD----- 264
LK+++MSA+++ S +FG + GR +PV E L D
Sbjct: 204 ---------LKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTA 254
Query: 265 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK--------- 315
Y+ A + +HL+E GDILVFLTGQ EIE L L Q+ E+
Sbjct: 255 YIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCEL----LFQMAESVDYDYDVQDTTL 310
Query: 316 --LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARL 373
L+ +P + S+ ++QQ R+F P G RK +++TNI+ TS+TI GI+YV+D GFVK
Sbjct: 311 DGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLN 370
Query: 374 YDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LEDSTKPEIKRCN 432
++P G++ L VVPISK++ALQRSGRAGR GKCFR+Y + + + + D PEIKR +
Sbjct: 371 HNPRLGLDILEVVPISKSEALQRSGRAGRTASGKCFRIYSKEFWSQCMPDHVIPEIKRTS 430
Query: 433 LSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARL 492
L++V+L LK L + D+I F +++ P+ I+++L+QL+ A+ ++ +G M
Sbjct: 431 LTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTR-LGLSMVEF 489
Query: 493 PLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFR 529
PL P + A+I A +C + +L AMLSVE++F R
Sbjct: 490 PLPPHLTCAVIRAASLDCEDLLLPIAAMLSVENVFIR 526
>sp|Q8IX18|DHX40_HUMAN Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40
PE=1 SV=2
Length = 779
Score = 354 bits (909), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 206/517 (39%), Positives = 301/517 (58%), Gaps = 69/517 (13%)
Query: 40 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99
+ PI K++++ VR N LI+ G TGSGKTTQLP++L+ AGF + G +IGVTQPR+VA
Sbjct: 52 TFPIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVA 110
Query: 100 AVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAI 150
A++VA+RVAEE LG +VGY +RFDD +S T IK L DP L+++S I
Sbjct: 111 AISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLTKFSVI 170
Query: 151 IVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLK 210
I+DEAHERT+ TD+L GLLKK+ +S + H
Sbjct: 171 ILDEAHERTLTTDILFGLLKKLFQEKSPNRKEH--------------------------- 203
Query: 211 QCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPV-EILYTLYPEPD----- 264
LK+++MSA+++ S +FG + GR +PV E L D
Sbjct: 204 ---------LKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTA 254
Query: 265 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK--------- 315
Y+ A + +HL+E GDILVFLTGQ EIE L L Q+ E+
Sbjct: 255 YIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCEL----LFQMAESVDYDYDVQDTTL 310
Query: 316 --LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARL 373
L+ +P + S+ ++QQ R+F P G RK +++TNI+ TS+TI GI+YV+D GFVK
Sbjct: 311 DGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLN 370
Query: 374 YDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LEDSTKPEIKRCN 432
++P G++ L VVPISK++ALQRSGRAGR GKCFR+Y ++ +++ + D PEIKR +
Sbjct: 371 HNPRLGLDILEVVPISKSEALQRSGRAGRTSSGKCFRIYSKDFWNQCMPDHVIPEIKRTS 430
Query: 433 LSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARL 492
L++V+L LK L + D+I F +++ P+ I+++L+QL+ A+ ++ +G M
Sbjct: 431 LTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTR-LGLSMVEF 489
Query: 493 PLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFR 529
PL P + A+I A +C + +L AMLSVE++F R
Sbjct: 490 PLPPHLTCAVIKAASLDCEDLLLPIAAMLSVENVFIR 526
>sp|Q9HDY4|YK16_SCHPO Putative ATP-dependent RNA helicase PB1A10.06c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAPB1A10.06c PE=3 SV=1
Length = 1183
Score = 332 bits (852), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 208/562 (37%), Positives = 301/562 (53%), Gaps = 97/562 (17%)
Query: 29 SRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC---- 84
+R +I + R +LPI + E+R++E++ ND++II G TGSGKTTQLPQFLF AGF
Sbjct: 386 NRPPEIQESRLALPIVAEEQRIMEQIFANDVVIICGATGSGKTTQLPQFLFEAGFSSPES 445
Query: 85 RDGKLIGVTQPRRVAAVTVAKRVAEE-SGVELGQRVGYSIRFDDRTSTSTRIK------- 136
+ +I +TQPRRVAAV++AKRV+EE +G +V Y IRFD + T IK
Sbjct: 446 ENPGMIAITQPRRVAAVSIAKRVSEELTG--FSSKVSYQIRFDSTINPDTAIKFMTDGIL 503
Query: 137 --EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSD 194
E D L+ YSA+IVDEAHER+V+TD+LLGLL ++ R + +
Sbjct: 504 LRELSSDFLLTAYSAVIVDEAHERSVNTDILLGLLSRIVRLRREMSKS------------ 551
Query: 195 MILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSE----YFGCAKAVHVQGRQ 250
+K PLKLIIMSA+L FSE + + + RQ
Sbjct: 552 -------------------DQKVKPLKLIIMSATLRVTDFSENKLLFSVPPPIIKIDARQ 592
Query: 251 FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLL--- 307
+PV I + +PDYL + +H G ILVFLTGQ+E+E + +++++R +
Sbjct: 593 YPVSIHFNRTTKPDYLQDAFDKVCLIHKRLPAGSILVFLTGQQEVEQLCQMLRKRFVRSF 652
Query: 308 -------------------------------QLP----------EASRKLVTVPIFSSLP 326
Q+P + S + +P++S L
Sbjct: 653 RPLKSRARIVVSRKTMSVENEDLQSETEDIDQVPTSSSSSVTYDDESEPMYVLPLYSLLT 712
Query: 327 SEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVV 386
+E QM+VF + G R I+ATN+AETS+TIP I+YV+D G K R+Y+ ++ V
Sbjct: 713 TEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVDCGKAKERVYNEKTSVQKFEVR 772
Query: 387 PISKAQALQRSGRAGREGPGKCFRLYPENEFD-KLEDSTKPEIKRCNLSNVILQLKALGV 445
ISKA A QR+GRAGR GPG C+RLY FD + PEI R + +++LQ+K + +
Sbjct: 773 WISKANADQRAGRAGRTGPGHCYRLYSSAVFDSSFPLHSLPEILRTPVESIVLQMKNMNI 832
Query: 446 DDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVA 505
D+I F F P R+ + KSL+ L LGA+ + L+ +G QM+ PL P +SK LI+
Sbjct: 833 DNIANFPFPTSPGRSRLEKSLKLLSNLGAIDSEGVLTK-LGEQMSLFPLSPRFSKMLIIG 891
Query: 506 GQFNCLEEMLITVAMLSVESIF 527
Q CL ++ V+ LS+ +F
Sbjct: 892 QQHGCLPYVIALVSALSINQLF 913
>sp|O17438|DHX15_STRPU Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
(Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2
SV=1
Length = 455
Score = 329 bits (843), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 183/410 (44%), Positives = 249/410 (60%), Gaps = 51/410 (12%)
Query: 135 IKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSD 194
++E + DP L RY I++DEAHERTV TD+L+GLLK+V+ RS
Sbjct: 10 LREGMTDPLLERYGVILLDEAHERTVATDILMGLLKEVEKQRSD---------------- 53
Query: 195 MILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVE 254
LKL++MSA+LDA F YF A + V GR PVE
Sbjct: 54 -------------------------LKLVVMSATLDAGKFQHYFDNAPLMTVPGRTHPVE 88
Query: 255 ILYTLYPEPDYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEAS 313
I YT PE DYL+A + T+ Q+H+ +E GD+L+FLTGQEEIE + ++ + L
Sbjct: 89 IFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKREVDNLGPEV 148
Query: 314 RKLVTVPIFSSLPSEQQMRVFAPA------AAGFRKVILATNIAETSVTIPGIKYVIDPG 367
L T+P++S+LP Q R+F A A RKV+++TNIAETS+TI G+ +VIDPG
Sbjct: 149 GDLKTIPLYSTLPPAMQQRIFEHAPPNKANGAIGRKVVVSTNIAETSLTIDGVVFVIDPG 208
Query: 368 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD-KLEDSTKP 426
F K ++Y+P +ESLLV PISKA A QR GRAGR PGKCFRLY E +D +++D+T P
Sbjct: 209 FAKQKVYNPRIRVESLLVSPISKASAQQRVGRAGRTRPGKCFRLYTEKAYDSEMQDNTYP 268
Query: 427 EIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVG 486
EI R NL V+LQLK LG+DD++ FDFM+ P+ +++++LE L LGAL D L+ +G
Sbjct: 269 EILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDSGDLTR-LG 327
Query: 487 HQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRR 536
MA PLDP +K +I + ++C E+L AMLSV F R P E ++
Sbjct: 328 SMMAEFPLDPQLAKMVIASTDYSCSNEILSVTAMLSVPQCFLR-PNEAKK 376
>sp|P45018|HRPA_HAEIN ATP-dependent RNA helicase HrpA homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hrpA PE=3
SV=2
Length = 1304
Score = 315 bits (807), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 189/504 (37%), Positives = 284/504 (56%), Gaps = 68/504 (13%)
Query: 39 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 98
+SLP++ + + + + ++ ++++ GETGSGKTTQLP+ GF G +IG TQPRR+
Sbjct: 81 ESLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGFGNLG-MIGHTQPRRI 139
Query: 99 AAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSA 149
AA +VA R+AEE ELG VGY +RF+D+ S +T+IK E D +L++YS
Sbjct: 140 AARSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILLAEIQNDRFLNQYSC 199
Query: 150 IIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTL 209
+I+DEAHER+++ D +LG L
Sbjct: 200 LIIDEAHERSLNNDFILGYL---------------------------------------- 219
Query: 210 KQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPD---YL 266
KQ R+ LKLII SA++D FS++F A + V GR +PVE+ Y E D L
Sbjct: 220 KQLLPRRRRDLKLIITSATIDVERFSKHFNNAPIIEVSGRTYPVEVRYRPVVEEDDQDQL 279
Query: 267 DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLP 326
L + ++ E GDIL+F+ G+ EI +Q++ L+ E +P+F+ L
Sbjct: 280 QGILNAVDELQA-EGRGDILIFMNGEREIRDTAEALQKQNLKHTE------ILPLFARLS 332
Query: 327 SEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVV 386
+++Q ++F P+ G +++LATN+AETS+T+P IKYVIDPG + Y ++ L +
Sbjct: 333 AQEQNKIFHPS--GLNRIVLATNVAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIE 390
Query: 387 PISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSNVILQLKALGVD 446
PIS+A A QR GR GR G C RLY E +F+ + T PEI R NL++VILQ+ ALG+D
Sbjct: 391 PISQASANQRKGRCGRVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLD 450
Query: 447 DIIGFDFMEKPSRASIIKSLEQLFLLGAL------TDDCKLSDPVGHQMARLPLDPIYSK 500
DI F F++ P I ++ L LGA + + +L VG Q+A+LP+DP +K
Sbjct: 451 DIEAFPFVDAPDERHIQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAK 510
Query: 501 ALIVAGQFNCLEEMLITVAMLSVE 524
++ A F C+ EM+I V+ LS++
Sbjct: 511 MILSAVNFGCVYEMMIIVSALSIQ 534
>sp|Q14147|DHX34_HUMAN Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34
PE=1 SV=2
Length = 1143
Score = 307 bits (787), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 191/523 (36%), Positives = 282/523 (53%), Gaps = 74/523 (14%)
Query: 30 RRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKL 89
R K+ ++R +LPIA R+++ ++++ ++++ G+TG GK+TQ+PQ+L AGF
Sbjct: 151 RLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSH---- 206
Query: 90 IGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI---------KEALL 140
+ TQPRR+A +++AKRV ES + G +VGY IRF+ S +T+I ++
Sbjct: 207 VACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQR 266
Query: 141 DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRG 200
+P L +Y +IVDE HER +H D LLG+L+++ R
Sbjct: 267 EPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPD---------------------- 304
Query: 201 NDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYT-- 258
LK+I+MSA+++ FS YF A V V GR FP+ ++Y
Sbjct: 305 -------------------LKVILMSATINISLFSSYFSNAPVVQVPGRLFPITVVYQPQ 345
Query: 259 -----------LYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLL 307
L P P L +I + E GD+LVFL+G EI +V Q
Sbjct: 346 EAEPTTSKSEKLDPRP--FLRVLESIDHKYPPEERGDLLVFLSGMAEISAVLEAAQ---- 399
Query: 308 QLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPG 367
+++ V +P+ S+L Q +VF A G RK IL+TNIAETSVTI GI++V+D G
Sbjct: 400 TYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSG 459
Query: 368 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPE 427
VK YDP ++ L IS+A A QR GRAGR GPG CFRLY E+++D PE
Sbjct: 460 KVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESDYDAFAPYPVPE 519
Query: 428 IKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGH 487
I+R L +++LQ+K++ V D F F+E P AS+ ++ L GAL D + P+G
Sbjct: 520 IRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGAL-DSSEALTPIGS 578
Query: 488 QMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRS 530
+A+LP+D + K LI+ F+ +E +L A LSV+S F RS
Sbjct: 579 LLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRS 621
>sp|Q9DBV3|DHX34_MOUSE Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34
PE=2 SV=2
Length = 1145
Score = 306 bits (784), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 191/525 (36%), Positives = 281/525 (53%), Gaps = 78/525 (14%)
Query: 30 RRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKL 89
R K+ ++R +LPIA R+++ ++++ ++++ G+TG GK+TQ+PQ+L AGF
Sbjct: 153 RLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSH---- 208
Query: 90 IGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI---------KEALL 140
+ TQPRR+A +++AKRV ES + G +VGY IRF+ S +T+I ++
Sbjct: 209 VACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQR 268
Query: 141 DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRG 200
+P L +Y +IVDE HER +H D LLG+L+++ R
Sbjct: 269 EPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPD---------------------- 306
Query: 201 NDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLY 260
LK+I+MSA+++ FS YF A V V GR FP+ ++Y
Sbjct: 307 -------------------LKVILMSATINISLFSSYFSHAPVVQVPGRLFPITVVY--- 344
Query: 261 PEPDYLDAT---------------LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQER 305
+P D T L I + E GD+LVFL+G EI +V Q
Sbjct: 345 -QPQEADQTASKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSGMAEITTVLDAAQA- 402
Query: 306 LLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVID 365
+++ V +P+ S+L Q +VF A AG RK IL+TNIAETSVTI GI++V+D
Sbjct: 403 ---YASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIAETSVTIDGIRFVVD 459
Query: 366 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTK 425
G VK YDP ++ L IS+A A QR GRAGR GPG C+RLY E+++D
Sbjct: 460 SGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAESDYDAFAPYPV 519
Query: 426 PEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPV 485
PEI+R L ++LQ+K++ V D F F+E P AS+ ++ L GAL D + P+
Sbjct: 520 PEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASVETAILYLQEQGAL-DSSEALTPI 578
Query: 486 GHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRS 530
G +A+LP+D + K LI+ F+ E +L A LSV+S F RS
Sbjct: 579 GSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRS 623
>sp|P43329|HRPA_ECOLI ATP-dependent RNA helicase HrpA OS=Escherichia coli (strain K12)
GN=hrpA PE=3 SV=3
Length = 1300
Score = 298 bits (764), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 187/504 (37%), Positives = 277/504 (54%), Gaps = 70/504 (13%)
Query: 40 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99
+LP++ ++ ++E +R + ++I+ GETGSGKTTQLP+ G G LIG TQPRR+A
Sbjct: 76 NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKG-LIGHTQPRRLA 134
Query: 100 AVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAI 150
A TVA R+AEE E G +GY +RF D S +T +K E D L +Y I
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTI 194
Query: 151 IVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLK 210
I+DEAHER+++ D LLG LK+ +L R D
Sbjct: 195 IIDEAHERSLNIDFLLGYLKE------------------------LLPRRPD-------- 222
Query: 211 QCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLY------PEPD 264
LK+II SA++D FS +F A + V GR +PVE+ Y E D
Sbjct: 223 ---------LKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERD 273
Query: 265 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 324
L A + ++ E+ GDIL+F++G+ EI + + L+ E +P+++
Sbjct: 274 QLQAIFDAVDELS-QESHGDILIFMSGEREIRDTADALNKLNLRHTE------ILPLYAR 326
Query: 325 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLL 384
L + +Q RVF + R+++LATN+AETS+T+PGIKYVIDPG + Y ++ L
Sbjct: 327 LSNSEQNRVFQSHSG--RRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLP 384
Query: 385 VVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSNVILQLKALG 444
+ PIS+A A QR GR GR G C RLY E++F + T PEI R NL++VILQ+ ALG
Sbjct: 385 IEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALG 444
Query: 445 VDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLS----DPVGHQMARLPLDPIYSK 500
+ DI F F+E P + +I + L LGA+T D + S P+G Q+++LP+DP ++
Sbjct: 445 LGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLAR 504
Query: 501 ALIVAGQFNCLEEMLITVAMLSVE 524
++ A + C+ E +I + LS++
Sbjct: 505 MVLEAQKHGCVREAMIITSALSIQ 528
>sp|P0CE10|Y4102_ARATH Putative uncharacterized protein At4g01020, chloroplastic
OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1
Length = 1787
Score = 251 bits (642), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 172/512 (33%), Positives = 264/512 (51%), Gaps = 76/512 (14%)
Query: 41 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAA 100
LPI + +++++++ I++++GETGSGK+TQL QFL +G ++ TQPR++AA
Sbjct: 303 LPIYAYRRQILKKIHCEQIMVLIGETGSGKSTQLVQFLADSGVAASESIV-CTQPRKIAA 361
Query: 101 VTVAKRVAEES-GVELGQRVGYSIRFDDRTSTSTRI----KEALLDPY-----LSRYSAI 150
+T+ RV EES G V + F S+++ LL Y LS S +
Sbjct: 362 MTLTDRVREESSGCYEENTVSCTPTFSSTEEISSKVVYMTDNCLLQHYMKDRSLSGISCV 421
Query: 151 IVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLK 210
I+DEAHER++ +T+ + L
Sbjct: 422 IIDEAHERSL-----------------------------------------NTDLLLALL 440
Query: 211 QCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPD------ 264
+ + L+L+IMSA+ DA S+Y +HV GR FPVEI+Y+ +
Sbjct: 441 RKLLSRRIDLRLVIMSATADANQLSQYLFDCGILHVNGRNFPVEIVYSPSGTEENSVVGR 500
Query: 265 ---YLDATLITIFQVHLDEAPGDILVFLTGQEEIE-SVERLVQERLLQLPEASRKLVTVP 320
Y + ++H E G IL FLT Q E+E + ER V P A + +P
Sbjct: 501 IASYAGDVVKMAVEIHKTEKEGTILAFLTSQAEVEWACERFVA------PSA----IALP 550
Query: 321 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 380
+ L E+Q VF G RKVI ATNIAETS+TIPG+KYVID G VK Y+P GM
Sbjct: 551 LHGKLSFEEQFMVFQ-NYPGRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGM 609
Query: 381 ESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSNVILQL 440
L V +S++ A QR+GRAGR PG+C+RLY + +FD + + +PEI+R +L +L++
Sbjct: 610 SILKVCQVSQSSARQRAGRAGRTEPGRCYRLYSKTDFDSMNLNQEPEIRRVHLGVALLRM 669
Query: 441 KALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPV--GHQMARLPLDPIY 498
ALG+D+I F+F++ P +I +++ L LGA+ + + + GH + +L L+P
Sbjct: 670 LALGIDNIAAFEFVDAPVPEAIAMAIQNLVQLGAVVEKNGVLELTQEGHCLVKLGLEPKL 729
Query: 499 SKALIVAGQFNCLEEMLITVA-MLSVESIFFR 529
K ++ + +E ++ A M + SIF R
Sbjct: 730 GKLILGCFRHRMGKEGIVLAAVMANASSIFCR 761
>sp|Q9H2U1|DHX36_HUMAN Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36
PE=1 SV=2
Length = 1008
Score = 242 bits (617), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 186/586 (31%), Positives = 269/586 (45%), Gaps = 135/586 (23%)
Query: 38 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK----LIGVT 93
R+ LP ++K LV + + + +I GETG GKTTQ+ QF+ + GK I T
Sbjct: 204 REKLPSYGMQKELVNLIDNHQVTVISGETGCGKTTQVTQFILD-NYIERGKGSACRIVCT 262
Query: 94 QPRRVAAVTVAKRVAEESGVELG--QRVGYSIRFDDR----------TSTSTRIKEALLD 141
QPRR++A++VA+RVA E G GY IR R +T ++ D
Sbjct: 263 QPRRISAISVAERVAAERAESCGSGNSTGYQIRLQSRLPRKQGSILYCTTGIILQWLQSD 322
Query: 142 PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGN 201
PYLS S I++DE HER + +DVL+ ++K + N RS
Sbjct: 323 PYLSSVSHIVLDEIHERNLQSDVLMTVVKDLLNFRSD----------------------- 359
Query: 202 DTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPV-------- 253
LK+I+MSA+L+A FSEYFG +H+ G FPV
Sbjct: 360 ------------------LKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDV 401
Query: 254 --EILYT-----------------------------LYPE--PDY--------------- 265
+I Y +Y E PDY
Sbjct: 402 IEKIRYVPEQKEHRSQFKRGFMQGHVNRQEKEEKEAIYKERWPDYVRELRRRYSASTVDV 461
Query: 266 --------LDATLIT--IFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK 315
+D LI I + L+E G ILVFL G + I ++ L+ + Q+ S K
Sbjct: 462 IEMMEDDKVDLNLIVALIRYIVLEEEDGAILVFLPGWDNISTLHDLL---MSQVMFKSDK 518
Query: 316 LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYD 375
+ +P+ S +P+ Q +VF G RK+++ATNIAETS+TI + YVID G +K +D
Sbjct: 519 FLIIPLHSLMPTVNQTQVFKRTPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFD 578
Query: 376 PVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSN 435
+ ++ +SKA A QR GRAGR PG C+ LY L+D PEI R L
Sbjct: 579 TQNNISTMSAEWVSKANAKQRKGRAGRVQPGHCYHLYNGLRASLLDDYQLPEILRTPLEE 638
Query: 436 VILQLKALGVDDIIGF--DFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLP 493
+ LQ+K L + I F M+ PS +++ S+ L L AL +L+ P+G +ARLP
Sbjct: 639 LCLQIKILRLGGIAYFLSRLMDPPSNEAVLLSIRHLMELNALDKQEELT-PLGVHLARLP 697
Query: 494 LDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRGKK 539
++P K ++ F CL+ +L A LS F+ P + GK+
Sbjct: 698 VEPHIGKMILFGALFCCLDPVLTIAASLS-----FKDPFVIPLGKE 738
>sp|Q5ZI74|DHX30_CHICK Putative ATP-dependent RNA helicase DHX30 OS=Gallus gallus GN=DHX30
PE=2 SV=1
Length = 1231
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 170/533 (31%), Positives = 270/533 (50%), Gaps = 89/533 (16%)
Query: 30 RRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK- 88
RR Q+ LP+ + ++ + +N +++I G+TG GKTT++PQ L + +G+
Sbjct: 467 RRGSSWQESHPLPVDPHKDTILSAIEQNPVVVIAGDTGCGKTTRIPQLLLEH-YILEGRG 525
Query: 89 ---LIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDR----------TSTSTRI 135
+ +TQPRR++A++VA+RVA+E G + + VGY +R + + + +
Sbjct: 526 ARCNVVITQPRRISAISVAQRVAQELGPNMRKNVGYQVRLESKPPARGGALLFCTVGILL 585
Query: 136 KEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDM 195
++ +P L S ++VDE HER V+TD LL LLK +Q N D
Sbjct: 586 RKLQGNPSLEGVSHVVVDEVHERDVNTDFLLILLKGIQKL----------------NPD- 628
Query: 196 ILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPV-- 253
L+L++MSA+ D + FS YFG V V G +PV
Sbjct: 629 ------------------------LRLVLMSATGDNQRFSHYFGGCPVVKVPGFMYPVKE 664
Query: 254 ----EIL----------YTLYPEPD--YLDATLIT--IFQVHLDEAPGDILVFLTGQEEI 295
EIL Y + D LD LIT + Q+ PG IL FL G +EI
Sbjct: 665 YYLEEILAKLGRHRHRHYEIKQSDDECVLDLDLITDLVLQIDAHGEPGGILCFLPGWQEI 724
Query: 296 ESVERLVQERLLQL--PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAET 353
+ V Q+RLL++ + SR LV +P+ S++P Q +F G RK++LATNIAET
Sbjct: 725 KGV----QQRLLEMLGSQNSRYLV-LPVHSNIPMMDQQNIFQRPPPGVRKIVLATNIAET 779
Query: 354 SVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYP 413
S+TI I +V+D G K YD + L V +SK+ +QR GRAGR G + L+P
Sbjct: 780 SITINDIVHVVDSGTHKEERYDLKTKVSCLETVWVSKSNVVQRRGRAGRCQSGFAYHLFP 839
Query: 414 ENEFDKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLL- 472
+ DK+ PEI R L N+++Q K + + + +F+ K + IK++++ +L
Sbjct: 840 RSRLDKMPTYQVPEILRTPLENLVVQAK-IHMPEKTAVEFLSKALDSPDIKAVDEAVILL 898
Query: 473 ---GALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLS 522
G L L+ +G ++A++ DP +KA+++A + CL +L+ V+ L+
Sbjct: 899 QEIGVLDQREALTT-LGKRLAQISTDPRLAKAIVLASIYRCLHPLLVIVSCLT 950
>sp|Q99PU8|DHX30_MOUSE Putative ATP-dependent RNA helicase DHX30 OS=Mus musculus GN=Dhx30
PE=2 SV=1
Length = 1217
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 166/532 (31%), Positives = 266/532 (50%), Gaps = 86/532 (16%)
Query: 30 RRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK- 88
RR I Q+ LP+ ++ + ++ +++I G+TG GKTT++PQ L + +G+
Sbjct: 446 RRGPIWQEAPQLPVDPHRDTILSAIEQHPVVVISGDTGCGKTTRIPQLLLER-YVTEGRG 504
Query: 89 ---LIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDR----------TSTSTRI 135
+ +TQPRR++AV+VA+RV+ E G L + VG+ +R + + + +
Sbjct: 505 ARCNVIITQPRRISAVSVAQRVSHELGPSLRRNVGFQVRLESKPPARGGALLFCTVGILL 564
Query: 136 KEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDM 195
++ +P L S +IVDE HER V+TD LL LLK +Q
Sbjct: 565 RKLQSNPSLEGVSHVIVDEVHERDVNTDFLLILLKGLQ---------------------- 602
Query: 196 ILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPV-- 253
R L+L++MSA+ D FS YFG + V G +PV
Sbjct: 603 -------------------RLNPALRLVLMSATGDNERFSRYFGGCPVIKVPGFMYPVKE 643
Query: 254 ----EILYTL----YPEPD---------YLDATLITIFQVHLDE--APGDILVFLTGQEE 294
+IL L YP LD L+T +H+D PG IL FL G +E
Sbjct: 644 HYLEDILAKLGKHQYPHRHRHHESEDECALDLDLVTDLVLHIDARGEPGGILCFLPGWQE 703
Query: 295 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETS 354
I+ V++ +QE L + E+ K + +P+ S++P Q +F G RK++LATNIAETS
Sbjct: 704 IKGVQQRLQE-ALGMHES--KYLILPVHSNIPMMDQKAIFQQPPLGVRKIVLATNIAETS 760
Query: 355 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 414
+T+ I +V+D G K YD + L V +S+A +QR GRAGR G + L+P
Sbjct: 761 ITVNDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPR 820
Query: 415 NEFDKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLL-- 472
+ +K+ PEI R L N++LQ K + + + +F+ K + IK++++ +L
Sbjct: 821 SRLEKMVPFQVPEILRTPLENLVLQAK-IHMPEKTAVEFLSKAVDSPNIKAVDEAVILLQ 879
Query: 473 --GALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLS 522
G L D + +G ++A + DP +KA+++A F CL +L+ V+ L+
Sbjct: 880 EIGVL-DQREYLTTLGQRLAHISTDPRLAKAIVLAAIFRCLHPLLVVVSCLT 930
>sp|Q2NKY8|DHX30_BOVIN Putative ATP-dependent RNA helicase DHX30 OS=Bos taurus GN=DHX30
PE=2 SV=1
Length = 1220
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 165/532 (31%), Positives = 266/532 (50%), Gaps = 86/532 (16%)
Query: 30 RRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK- 88
RR + Q+ LP+ ++ + ++ +++I G+TG GKTT++PQ L + +G+
Sbjct: 449 RRGPVWQEAPQLPVDPHRDTILNAIEQHPVVVIAGDTGCGKTTRIPQLLLER-YVTEGRG 507
Query: 89 ---LIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDR----------TSTSTRI 135
+ +TQPRR++AV+VA+RV+ E G L + VG+ +R + + + +
Sbjct: 508 ARCNVIITQPRRISAVSVAQRVSHELGPTLRRNVGFQVRLESKPPARGGALLFCTVGILL 567
Query: 136 KEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDM 195
++ +P L S ++VDE HER V+TD LL LLK +Q
Sbjct: 568 RKLQSNPSLEGVSHVVVDEEHERDVNTDFLLILLKGLQ---------------------- 605
Query: 196 ILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPV-- 253
R L+L++MSA+ D FS YFG + V G +PV
Sbjct: 606 -------------------RLNPALRLVLMSATGDNERFSRYFGGCPVIKVPGFMYPVKE 646
Query: 254 ----EILYTL----YPEPD---------YLDATLITIFQVHLDE--APGDILVFLTGQEE 294
+IL L YP LD L+T +H+D PG IL FL G +E
Sbjct: 647 HYLEDILAKLGKHQYPHRHRHHESEDECALDLDLVTDLVLHIDARGEPGGILCFLPGWQE 706
Query: 295 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETS 354
I+ V++ +QE L + E+ K + +P+ S++P Q +F G RK++LATNIAETS
Sbjct: 707 IKGVQQRLQE-ALGMHES--KYLILPVHSNIPMMDQKAIFQQPPIGVRKIVLATNIAETS 763
Query: 355 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 414
+TI I +V+D G K YD + L V +S+A +QR GRAGR G + L+P
Sbjct: 764 ITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPR 823
Query: 415 NEFDKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLL-- 472
+ +K+ PEI R L N++LQ K + + + +F+ K + IK++++ +L
Sbjct: 824 SRLEKMAPFQVPEILRTPLENLVLQAK-IHMPEKTAVEFLSKAVDSPNIKAVDEAVILLQ 882
Query: 473 --GALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLS 522
G L D + +G ++A + DP +KA+++A F CL +L+ V+ L+
Sbjct: 883 EIGVL-DQREYLTTLGQRLAHISTDPRLAKAIVLAAIFRCLHPLLVVVSCLT 933
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,088,231
Number of Sequences: 539616
Number of extensions: 8507578
Number of successful extensions: 65876
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 62502
Number of HSP's gapped (non-prelim): 2706
length of query: 555
length of database: 191,569,459
effective HSP length: 123
effective length of query: 432
effective length of database: 125,196,691
effective search space: 54084970512
effective search space used: 54084970512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)