Query 008735
Match_columns 555
No_of_seqs 350 out of 3142
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 15:55:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 5.7E-98 1E-102 756.0 42.8 477 30-549 39-525 (674)
2 KOG0923 mRNA splicing factor A 100.0 1.1E-96 2E-101 737.4 40.6 480 30-553 253-743 (902)
3 KOG0924 mRNA splicing factor A 100.0 3.3E-91 7.2E-96 698.7 37.5 472 34-548 348-830 (1042)
4 KOG0925 mRNA splicing factor A 100.0 6.7E-88 1.5E-92 653.3 40.9 485 20-554 24-525 (699)
5 COG1643 HrpA HrpA-like helicas 100.0 3.2E-86 6.9E-91 710.3 45.3 458 30-535 38-510 (845)
6 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.2E-80 4.7E-85 690.1 47.3 465 36-554 61-543 (1283)
7 PRK11131 ATP-dependent RNA hel 100.0 2.4E-80 5.1E-85 687.0 44.4 464 37-554 69-552 (1294)
8 KOG0920 ATP-dependent RNA heli 100.0 2.8E-80 6.1E-85 660.4 32.6 482 28-554 159-684 (924)
9 KOG0926 DEAH-box RNA helicase 100.0 1.2E-79 2.6E-84 625.1 34.9 470 27-529 241-818 (1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3E-77 6.5E-82 652.1 45.4 437 41-528 1-448 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 9.8E-75 2.1E-79 634.1 45.8 436 40-525 3-450 (812)
12 PHA02653 RNA helicase NPH-II; 100.0 5.8E-55 1.3E-59 466.3 34.7 390 45-508 167-596 (675)
13 PRK02362 ski2-like helicase; P 100.0 5.8E-45 1.2E-49 403.5 32.9 436 28-520 9-530 (737)
14 PRK01172 ski2-like helicase; P 100.0 3.5E-44 7.7E-49 394.7 29.3 433 28-519 9-505 (674)
15 KOG0921 Dosage compensation co 100.0 1.4E-45 3.1E-50 380.0 14.1 480 30-554 366-913 (1282)
16 KOG0331 ATP-dependent RNA heli 100.0 1.1E-43 2.3E-48 359.8 24.6 328 22-419 92-452 (519)
17 PRK00254 ski2-like helicase; P 100.0 2.2E-41 4.8E-46 374.1 34.1 436 28-523 9-525 (720)
18 COG1202 Superfamily II helicas 100.0 1E-41 2.3E-46 337.9 23.0 467 17-552 190-710 (830)
19 KOG0330 ATP-dependent RNA heli 100.0 1.1E-41 2.3E-46 324.0 19.2 325 19-417 59-409 (476)
20 PRK11776 ATP-dependent RNA hel 100.0 9.7E-41 2.1E-45 352.4 27.5 323 23-418 6-352 (460)
21 PRK04837 ATP-dependent RNA hel 100.0 1.1E-40 2.4E-45 348.2 25.3 328 19-418 6-365 (423)
22 COG0513 SrmB Superfamily II DN 100.0 2.2E-40 4.9E-45 349.9 26.1 323 21-415 29-380 (513)
23 PTZ00110 helicase; Provisional 100.0 4.5E-40 9.8E-45 351.0 26.8 319 28-418 138-487 (545)
24 PRK04537 ATP-dependent RNA hel 100.0 8.3E-40 1.8E-44 350.0 28.5 323 23-417 11-366 (572)
25 PRK10590 ATP-dependent RNA hel 100.0 8.3E-40 1.8E-44 343.9 26.2 317 28-418 9-355 (456)
26 PRK11192 ATP-dependent RNA hel 100.0 2.5E-39 5.5E-44 339.5 28.5 319 28-419 9-356 (434)
27 PLN00206 DEAD-box ATP-dependen 100.0 1E-39 2.3E-44 347.2 25.7 317 28-418 129-478 (518)
28 PRK11634 ATP-dependent RNA hel 100.0 2.4E-39 5.3E-44 348.2 27.7 322 23-417 8-354 (629)
29 COG1204 Superfamily II helicas 100.0 4.1E-39 9E-44 349.0 28.6 443 28-523 17-543 (766)
30 KOG0333 U5 snRNP-like RNA heli 100.0 1E-39 2.2E-44 320.9 21.2 320 26-416 252-625 (673)
31 PTZ00424 helicase 45; Provisio 100.0 4.3E-39 9.4E-44 335.2 26.7 319 28-419 36-378 (401)
32 TIGR03817 DECH_helic helicase/ 100.0 3.2E-38 6.9E-43 346.1 31.9 329 21-413 15-384 (742)
33 PRK01297 ATP-dependent RNA hel 100.0 1.4E-38 3E-43 336.8 27.8 318 28-417 95-444 (475)
34 KOG0328 Predicted ATP-dependen 100.0 1.1E-38 2.3E-43 291.1 18.5 320 28-419 35-377 (400)
35 TIGR00614 recQ_fam ATP-depende 100.0 8.8E-37 1.9E-41 321.9 28.4 301 37-419 6-337 (470)
36 PLN03137 ATP-dependent DNA hel 100.0 1.1E-36 2.3E-41 331.8 29.6 311 29-419 446-791 (1195)
37 KOG0345 ATP-dependent RNA heli 100.0 3.2E-37 7E-42 300.0 22.6 342 20-432 6-384 (567)
38 KOG0340 ATP-dependent RNA heli 100.0 6.4E-37 1.4E-41 288.1 22.6 330 17-418 3-364 (442)
39 PRK11057 ATP-dependent DNA hel 100.0 3.9E-36 8.5E-41 325.1 28.8 302 32-418 14-346 (607)
40 KOG0342 ATP-dependent RNA heli 100.0 1.4E-36 3E-41 297.6 22.7 317 28-417 90-439 (543)
41 KOG0348 ATP-dependent RNA heli 100.0 1.8E-36 4E-41 298.5 23.3 365 16-436 131-577 (708)
42 PRK13767 ATP-dependent helicas 100.0 1E-35 2.2E-40 332.7 31.9 327 25-414 16-399 (876)
43 KOG0338 ATP-dependent RNA heli 100.0 2.7E-37 5.9E-42 302.6 14.0 318 28-417 189-535 (691)
44 KOG0335 ATP-dependent RNA heli 100.0 1.6E-36 3.5E-41 302.3 19.1 321 28-413 82-442 (482)
45 TIGR01389 recQ ATP-dependent D 100.0 2.7E-35 5.9E-40 319.5 27.5 299 38-419 9-335 (591)
46 KOG0343 RNA Helicase [RNA proc 100.0 3E-36 6.5E-41 297.8 18.0 329 20-419 68-426 (758)
47 KOG0952 DNA/RNA helicase MER3/ 100.0 2.4E-35 5.1E-40 310.7 25.2 443 42-538 110-655 (1230)
48 KOG0332 ATP-dependent RNA heli 100.0 4.8E-35 1E-39 277.1 22.7 333 15-414 84-442 (477)
49 COG1201 Lhr Lhr-like helicases 100.0 2.6E-34 5.7E-39 307.4 27.8 379 24-471 5-438 (814)
50 KOG0336 ATP-dependent RNA heli 100.0 1.9E-35 4.2E-40 282.3 16.8 317 30-419 230-576 (629)
51 TIGR00580 mfd transcription-re 100.0 1.4E-33 2.9E-38 312.3 29.0 306 29-414 438-769 (926)
52 COG0514 RecQ Superfamily II DN 100.0 7.7E-34 1.7E-38 293.5 23.3 297 40-418 15-340 (590)
53 KOG0341 DEAD-box protein abstr 100.0 2.2E-35 4.8E-40 280.1 8.3 328 20-417 169-530 (610)
54 KOG0326 ATP-dependent RNA heli 100.0 6.9E-35 1.5E-39 270.5 8.6 313 31-417 96-431 (459)
55 PRK10917 ATP-dependent DNA hel 100.0 1.5E-32 3.2E-37 300.3 28.0 305 30-413 249-587 (681)
56 PRK10689 transcription-repair 100.0 2.5E-32 5.4E-37 308.6 28.2 306 29-414 587-918 (1147)
57 KOG0344 ATP-dependent RNA heli 100.0 2.4E-33 5.2E-38 281.3 16.7 325 28-419 144-499 (593)
58 PRK09751 putative ATP-dependen 100.0 5.1E-33 1.1E-37 315.4 21.3 289 62-409 1-379 (1490)
59 TIGR00643 recG ATP-dependent D 100.0 8.3E-32 1.8E-36 292.6 29.7 305 31-412 225-563 (630)
60 KOG0346 RNA helicase [RNA proc 100.0 2.7E-33 5.8E-38 270.3 15.2 325 21-417 19-412 (569)
61 KOG0347 RNA helicase [RNA proc 100.0 1E-34 2.2E-39 287.0 5.0 322 27-417 188-572 (731)
62 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.8E-31 6E-36 285.9 27.9 298 34-404 7-378 (844)
63 KOG0350 DEAD-box ATP-dependent 100.0 6.3E-32 1.4E-36 264.8 18.1 346 34-417 151-542 (620)
64 KOG0951 RNA helicase BRR2, DEA 100.0 2.9E-31 6.2E-36 283.1 24.2 438 42-531 309-853 (1674)
65 KOG0339 ATP-dependent RNA heli 100.0 1.5E-31 3.2E-36 262.1 19.0 316 30-418 233-578 (731)
66 COG1111 MPH1 ERCC4-like helica 100.0 1.6E-30 3.4E-35 257.2 26.0 304 39-415 12-481 (542)
67 TIGR01587 cas3_core CRISPR-ass 100.0 8.4E-31 1.8E-35 268.5 23.7 283 59-415 1-336 (358)
68 KOG4284 DEAD box protein [Tran 100.0 8.2E-31 1.8E-35 263.4 16.3 319 28-415 33-379 (980)
69 COG1205 Distinct helicase fami 100.0 7.9E-30 1.7E-34 280.7 24.5 327 27-413 55-420 (851)
70 KOG0334 RNA helicase [RNA proc 100.0 3.7E-30 7.9E-35 274.2 20.6 317 28-417 373-722 (997)
71 KOG0354 DEAD-box like helicase 100.0 1.4E-29 3.1E-34 264.7 23.5 121 274-415 405-529 (746)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 1.1E-28 2.4E-33 250.5 25.3 279 46-401 1-357 (357)
73 KOG0948 Nuclear exosomal RNA h 100.0 8.1E-30 1.7E-34 260.1 16.5 321 40-415 127-539 (1041)
74 KOG0327 Translation initiation 100.0 8.2E-30 1.8E-34 243.9 15.5 316 28-419 34-374 (397)
75 KOG0947 Cytoplasmic exosomal R 100.0 7.7E-29 1.7E-33 258.9 19.5 322 38-415 293-723 (1248)
76 PHA02558 uvsW UvsW helicase; P 100.0 5.2E-28 1.1E-32 256.6 22.5 291 40-407 112-443 (501)
77 COG4581 Superfamily II RNA hel 100.0 4E-28 8.6E-33 263.5 19.6 321 37-413 114-535 (1041)
78 KOG0351 ATP-dependent DNA heli 100.0 1E-27 2.2E-32 262.1 20.9 312 34-419 256-596 (941)
79 KOG0352 ATP-dependent DNA heli 100.0 6.2E-28 1.3E-32 232.3 15.7 310 30-419 6-366 (641)
80 KOG0337 ATP-dependent RNA heli 100.0 2.7E-28 5.7E-33 234.8 12.5 323 21-416 21-369 (529)
81 PRK13766 Hef nuclease; Provisi 99.9 7.6E-26 1.6E-30 254.0 27.4 108 280-414 363-478 (773)
82 PRK09401 reverse gyrase; Revie 99.9 2.1E-26 4.5E-31 261.3 20.9 305 33-401 71-429 (1176)
83 KOG0950 DNA polymerase theta/e 99.9 3.1E-26 6.7E-31 241.4 17.2 335 28-417 209-613 (1008)
84 PRK14701 reverse gyrase; Provi 99.9 6.7E-26 1.4E-30 262.3 21.0 331 31-417 68-458 (1638)
85 PRK09694 helicase Cas3; Provis 99.9 5.6E-25 1.2E-29 241.5 26.4 294 40-404 284-663 (878)
86 TIGR00603 rad25 DNA repair hel 99.9 6E-25 1.3E-29 234.8 24.7 292 41-417 254-609 (732)
87 COG1200 RecG RecG-like helicas 99.9 1.5E-24 3.2E-29 224.1 24.8 308 30-416 250-592 (677)
88 PRK05580 primosome assembly pr 99.9 9.2E-25 2E-29 238.1 23.1 309 40-411 142-545 (679)
89 COG1197 Mfd Transcription-repa 99.9 4.5E-24 9.7E-29 232.2 25.7 310 26-415 578-913 (1139)
90 KOG0353 ATP-dependent DNA heli 99.9 4E-24 8.6E-29 203.2 22.0 311 28-417 79-469 (695)
91 PRK12898 secA preprotein trans 99.9 4.3E-24 9.3E-29 225.7 24.6 164 221-416 410-587 (656)
92 TIGR00595 priA primosomal prot 99.9 2.1E-24 4.6E-29 227.2 19.5 285 61-410 1-376 (505)
93 PRK09200 preprotein translocas 99.9 1.1E-23 2.4E-28 227.2 25.4 164 221-416 365-542 (790)
94 TIGR03714 secA2 accessory Sec 99.9 3.1E-23 6.7E-28 221.7 27.3 163 221-416 361-538 (762)
95 TIGR01054 rgy reverse gyrase. 99.9 8.3E-24 1.8E-28 240.5 23.4 286 31-373 67-412 (1171)
96 COG4098 comFA Superfamily II D 99.9 3.3E-23 7.2E-28 195.2 21.0 301 34-411 91-412 (441)
97 COG1061 SSL2 DNA or RNA helica 99.9 5.4E-23 1.2E-27 214.0 23.4 287 37-404 31-377 (442)
98 TIGR00963 secA preprotein tran 99.9 1.7E-22 3.6E-27 214.8 23.9 163 221-415 342-517 (745)
99 PRK11448 hsdR type I restricti 99.9 2.7E-21 5.9E-26 218.5 24.3 112 281-412 697-812 (1123)
100 KOG0949 Predicted helicase, DE 99.9 2.6E-20 5.6E-25 195.9 19.5 330 41-431 510-1065(1330)
101 PRK04914 ATP-dependent helicas 99.9 1.1E-19 2.3E-24 201.4 25.0 118 272-415 483-605 (956)
102 COG1203 CRISPR-associated heli 99.8 3.5E-20 7.5E-25 204.3 20.6 303 40-413 193-548 (733)
103 PRK12906 secA preprotein trans 99.8 4.6E-19 9.9E-24 190.4 22.0 163 221-415 377-553 (796)
104 TIGR00631 uvrb excinuclease AB 99.8 9E-18 1.9E-22 181.3 27.0 127 265-415 427-553 (655)
105 COG1198 PriA Primosomal protei 99.8 1.7E-18 3.7E-23 185.1 19.2 309 40-410 196-598 (730)
106 KOG0329 ATP-dependent RNA heli 99.8 7E-19 1.5E-23 159.4 12.5 293 18-417 39-357 (387)
107 PRK13104 secA preprotein trans 99.8 5.9E-17 1.3E-21 175.1 23.2 177 221-412 381-584 (896)
108 PRK12904 preprotein translocas 99.8 3.6E-17 7.8E-22 176.6 21.4 178 221-412 367-570 (830)
109 PRK05298 excinuclease ABC subu 99.8 2.1E-16 4.5E-21 172.1 26.3 125 266-414 432-556 (652)
110 KOG0953 Mitochondrial RNA heli 99.7 3.6E-17 7.7E-22 163.6 15.7 277 56-415 190-477 (700)
111 KOG0349 Putative DEAD-box RNA 99.7 2.7E-17 5.9E-22 159.4 12.1 109 280-412 503-612 (725)
112 COG0556 UvrB Helicase subunit 99.7 3.1E-15 6.6E-20 149.6 23.5 169 218-413 385-555 (663)
113 COG4096 HsdR Type I site-speci 99.7 2.9E-15 6.3E-20 157.6 22.7 293 41-404 164-526 (875)
114 COG1110 Reverse gyrase [DNA re 99.7 2.1E-15 4.6E-20 160.9 21.8 295 31-372 71-419 (1187)
115 KOG4150 Predicted ATP-dependen 99.7 1.3E-16 2.7E-21 159.6 11.8 318 31-404 275-628 (1034)
116 PRK13107 preprotein translocas 99.7 6.7E-15 1.4E-19 158.8 22.0 124 221-358 386-514 (908)
117 TIGR00348 hsdR type I site-spe 99.6 1.2E-14 2.6E-19 159.0 21.9 102 282-406 514-638 (667)
118 cd00079 HELICc Helicase superf 99.6 3E-15 6.4E-20 130.0 11.0 104 281-411 27-131 (131)
119 PF00270 DEAD: DEAD/DEAH box h 99.6 7.4E-15 1.6E-19 133.6 13.9 116 44-160 1-133 (169)
120 cd00268 DEADc DEAD-box helicas 99.6 1.1E-14 2.3E-19 136.9 14.9 129 28-157 7-154 (203)
121 KOG0951 RNA helicase BRR2, DEA 99.6 1.5E-14 3.3E-19 156.4 16.9 356 4-426 1105-1508(1674)
122 PF00271 Helicase_C: Helicase 99.6 1.4E-15 3E-20 119.3 5.5 72 315-404 7-78 (78)
123 PLN03142 Probable chromatin-re 99.6 1.4E-13 2.9E-18 153.7 22.3 110 281-417 486-601 (1033)
124 TIGR02562 cas3_yersinia CRISPR 99.6 3.1E-13 6.6E-18 147.4 23.9 96 285-404 759-880 (1110)
125 TIGR01407 dinG_rel DnaQ family 99.6 6.5E-13 1.4E-17 149.9 27.4 184 220-412 596-812 (850)
126 PF04408 HA2: Helicase associa 99.5 3.2E-14 6.8E-19 117.1 8.1 80 464-544 1-82 (102)
127 PRK12899 secA preprotein trans 99.5 5.2E-12 1.1E-16 137.0 24.8 167 221-413 505-679 (970)
128 PRK12900 secA preprotein trans 99.5 1.4E-13 2.9E-18 149.5 12.6 165 221-417 535-713 (1025)
129 smart00847 HA2 Helicase associ 99.5 1.1E-13 2.4E-18 112.1 8.6 88 464-554 1-89 (92)
130 PRK12326 preprotein translocas 99.5 7E-12 1.5E-16 132.7 22.2 160 221-413 364-545 (764)
131 KOG0921 Dosage compensation co 99.4 2.4E-15 5.3E-20 157.4 -5.7 458 37-553 401-917 (1282)
132 smart00490 HELICc helicase sup 99.4 2.5E-13 5.5E-18 107.2 6.3 72 315-404 11-82 (82)
133 KOG1123 RNA polymerase II tran 99.4 4.8E-12 1E-16 125.5 13.8 116 269-416 531-654 (776)
134 PRK07246 bifunctional ATP-depe 99.4 4.8E-10 1E-14 125.2 28.7 177 220-412 574-781 (820)
135 smart00487 DEXDc DEAD-like hel 99.3 4.8E-11 1E-15 111.0 14.7 75 38-112 4-79 (201)
136 PRK14873 primosome assembly pr 99.3 6.9E-11 1.5E-15 127.9 17.2 277 61-415 164-539 (665)
137 PRK13103 secA preprotein trans 99.3 1.4E-10 2.9E-15 126.0 18.1 159 221-412 386-588 (913)
138 PRK12903 secA preprotein trans 99.2 7.9E-10 1.7E-14 119.0 21.4 158 221-411 363-535 (925)
139 PF04851 ResIII: Type III rest 99.2 4.5E-11 9.8E-16 110.1 9.2 66 41-111 2-74 (184)
140 PF07652 Flavi_DEAD: Flaviviru 99.2 1.8E-11 3.8E-16 104.1 5.7 111 55-174 2-123 (148)
141 PRK08074 bifunctional ATP-depe 99.2 7.5E-09 1.6E-13 117.8 26.8 141 264-412 735-891 (928)
142 cd00046 DEXDc DEAD-like helica 99.2 3.7E-10 8.1E-15 98.6 12.6 102 58-161 1-118 (144)
143 CHL00122 secA preprotein trans 99.2 2E-09 4.2E-14 116.7 19.8 124 221-358 361-491 (870)
144 KOG0385 Chromatin remodeling c 99.0 2.8E-08 6E-13 104.1 20.5 114 281-418 486-602 (971)
145 COG4889 Predicted helicase [Ge 99.0 4E-09 8.6E-14 111.4 11.1 106 284-407 462-576 (1518)
146 KOG0387 Transcription-coupled 98.9 8.4E-08 1.8E-12 101.1 20.2 114 282-418 546-661 (923)
147 PF02399 Herpes_ori_bp: Origin 98.9 1.6E-07 3.5E-12 100.9 21.1 294 55-416 47-389 (824)
148 TIGR03117 cas_csf4 CRISPR-asso 98.9 9.5E-07 2.1E-11 94.9 27.0 136 265-413 454-615 (636)
149 PRK12902 secA preprotein trans 98.9 1.2E-07 2.6E-12 103.0 18.6 124 221-358 376-506 (939)
150 KOG0952 DNA/RNA helicase MER3/ 98.8 3.7E-09 8.1E-14 114.0 4.5 210 46-298 931-1169(1230)
151 KOG0390 DNA repair protein, SN 98.7 2E-06 4.3E-11 92.9 20.6 83 315-415 619-707 (776)
152 KOG0384 Chromodomain-helicase 98.4 7.6E-06 1.7E-10 90.5 16.3 131 281-442 698-836 (1373)
153 PRK12901 secA preprotein trans 98.3 2.8E-06 6.2E-11 93.5 10.3 159 221-412 565-738 (1112)
154 KOG1000 Chromatin remodeling p 98.2 8E-05 1.7E-09 75.1 16.9 77 280-365 490-568 (689)
155 KOG0392 SNF2 family DNA-depend 98.1 9.9E-05 2.2E-09 81.8 17.1 113 282-418 1340-1457(1549)
156 PF00448 SRP54: SRP54-type pro 98.1 2.3E-05 5E-10 72.6 10.3 93 58-157 2-94 (196)
157 PF13401 AAA_22: AAA domain; P 98.0 8.1E-06 1.8E-10 70.5 5.5 103 55-172 2-111 (131)
158 PF13604 AAA_30: AAA domain; P 98.0 6.4E-05 1.4E-09 69.8 11.4 62 43-106 2-65 (196)
159 PF13245 AAA_19: Part of AAA d 98.0 2.4E-05 5.1E-10 60.3 6.9 55 53-107 6-62 (76)
160 KOG0389 SNF2 family DNA-depend 97.9 0.0003 6.5E-09 74.9 15.6 113 282-418 777-891 (941)
161 COG0653 SecA Preprotein transl 97.9 0.00021 4.6E-09 77.9 14.8 98 282-409 429-539 (822)
162 PRK12723 flagellar biosynthesi 97.8 0.00026 5.7E-09 72.2 12.5 89 57-158 174-266 (388)
163 TIGR02768 TraA_Ti Ti-type conj 97.7 0.0042 9.1E-08 69.5 22.2 63 40-104 350-413 (744)
164 TIGR01447 recD exodeoxyribonuc 97.7 0.00013 2.7E-09 78.9 9.8 65 45-109 148-215 (586)
165 PRK11747 dinG ATP-dependent DN 97.7 0.0004 8.8E-09 77.0 13.9 178 220-412 457-672 (697)
166 PF13086 AAA_11: AAA domain; P 97.7 8.9E-05 1.9E-09 70.8 7.6 67 43-109 2-75 (236)
167 TIGR01448 recD_rel helicase, p 97.7 0.00029 6.4E-09 78.3 11.8 69 36-104 317-385 (720)
168 cd00009 AAA The AAA+ (ATPases 97.7 0.00045 9.7E-09 60.3 10.8 48 47-96 7-56 (151)
169 COG0610 Type I site-specific r 97.6 0.0025 5.3E-08 73.0 18.7 51 337-406 589-639 (962)
170 PRK10875 recD exonuclease V su 97.6 0.00051 1.1E-08 74.4 11.9 66 44-109 154-221 (615)
171 TIGR00604 rad3 DNA repair heli 97.6 0.00042 9E-09 77.4 11.6 184 221-411 443-671 (705)
172 PRK14722 flhF flagellar biosyn 97.6 0.00056 1.2E-08 69.2 11.3 89 55-156 135-225 (374)
173 PF05970 PIF1: PIF1-like helic 97.6 0.00018 3.8E-09 73.7 7.8 102 43-155 2-111 (364)
174 PRK11889 flhF flagellar biosyn 97.5 0.0014 3E-08 66.2 12.5 86 58-156 242-330 (436)
175 COG1419 FlhF Flagellar GTP-bin 97.5 0.001 2.2E-08 66.9 11.6 88 56-156 202-291 (407)
176 PRK06526 transposase; Provisio 97.5 0.00026 5.5E-09 68.4 6.8 40 52-93 93-132 (254)
177 PRK13889 conjugal transfer rel 97.5 0.034 7.4E-07 63.4 24.6 64 39-104 343-407 (988)
178 PRK14974 cell division protein 97.5 0.0014 3E-08 65.7 12.2 94 57-159 140-235 (336)
179 PF00176 SNF2_N: SNF2 family N 97.5 0.00023 5E-09 70.8 6.6 55 56-111 24-81 (299)
180 PRK05703 flhF flagellar biosyn 97.4 0.0017 3.7E-08 67.5 13.1 87 57-156 221-309 (424)
181 TIGR03015 pepcterm_ATPase puta 97.4 0.001 2.3E-08 65.1 11.0 56 17-81 7-67 (269)
182 smart00382 AAA ATPases associa 97.4 0.00059 1.3E-08 59.0 8.3 41 57-99 2-42 (148)
183 COG1120 FepC ABC-type cobalami 97.4 2.1E-05 4.7E-10 74.8 -1.2 27 54-80 25-51 (258)
184 COG1199 DinG Rad3-related DNA 97.4 0.0023 5E-08 71.2 14.6 181 220-412 404-615 (654)
185 smart00489 DEXDc3 DEAD-like he 97.4 0.0004 8.7E-09 68.6 7.6 70 39-108 5-82 (289)
186 smart00488 DEXDc2 DEAD-like he 97.4 0.0004 8.7E-09 68.6 7.6 70 39-108 5-82 (289)
187 TIGR02760 TraI_TIGR conjugativ 97.4 0.012 2.6E-07 72.3 20.8 65 40-106 427-493 (1960)
188 PRK13826 Dtr system oriT relax 97.4 0.035 7.5E-07 63.8 23.0 64 39-104 378-442 (1102)
189 PRK08181 transposase; Validate 97.3 0.0034 7.4E-08 61.0 11.9 40 53-94 102-141 (269)
190 PF09848 DUF2075: Uncharacteri 97.2 0.00074 1.6E-08 68.9 7.5 91 58-157 2-94 (352)
191 PF13307 Helicase_C_2: Helicas 97.2 0.00022 4.7E-09 64.4 3.0 122 281-411 8-147 (167)
192 PRK07952 DNA replication prote 97.2 0.005 1.1E-07 58.9 12.4 92 58-176 100-191 (244)
193 PF13173 AAA_14: AAA domain 97.2 0.0023 5E-08 54.9 9.1 27 56-82 1-27 (128)
194 COG1136 SalX ABC-type antimicr 97.2 0.00049 1.1E-08 64.3 5.2 28 54-81 28-55 (226)
195 PRK10416 signal recognition pa 97.2 0.0058 1.2E-07 61.1 12.9 93 56-157 113-207 (318)
196 PRK12726 flagellar biosynthesi 97.2 0.002 4.4E-08 64.8 9.5 89 55-156 204-295 (407)
197 PF02562 PhoH: PhoH-like prote 97.2 0.00051 1.1E-08 63.5 5.0 58 41-98 3-60 (205)
198 PRK04296 thymidine kinase; Pro 97.2 0.0013 2.9E-08 60.7 7.7 37 57-95 2-38 (190)
199 PRK12727 flagellar biosynthesi 97.2 0.0032 7E-08 66.0 11.0 90 54-156 347-438 (559)
200 PRK10536 hypothetical protein; 97.2 0.00095 2.1E-08 63.5 6.6 61 37-97 54-114 (262)
201 PRK14721 flhF flagellar biosyn 97.1 0.0047 1E-07 63.7 12.1 87 56-155 190-278 (420)
202 KOG0391 SNF2 family DNA-depend 97.1 0.0033 7.1E-08 69.8 11.2 116 280-419 1274-1391(1958)
203 PRK14723 flhF flagellar biosyn 97.1 0.005 1.1E-07 67.7 12.5 87 57-156 185-273 (767)
204 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0035 7.6E-08 57.0 9.2 78 53-155 21-98 (177)
205 COG1116 TauB ABC-type nitrate/ 97.1 0.0033 7.1E-08 59.1 9.0 100 53-154 25-156 (248)
206 PRK06995 flhF flagellar biosyn 97.0 0.0046 9.9E-08 64.8 11.0 87 56-155 255-343 (484)
207 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0016 3.4E-08 57.2 6.3 75 54-155 23-97 (144)
208 cd03216 ABC_Carb_Monos_I This 97.0 0.0033 7.2E-08 56.5 8.1 86 54-155 23-109 (163)
209 PRK12724 flagellar biosynthesi 97.0 0.0064 1.4E-07 62.2 11.0 85 57-156 223-309 (432)
210 PF07517 SecA_DEAD: SecA DEAD- 96.9 0.0061 1.3E-07 58.8 10.1 89 31-124 66-154 (266)
211 PF05729 NACHT: NACHT domain 96.9 0.0052 1.1E-07 55.0 9.2 25 58-82 1-25 (166)
212 TIGR03499 FlhF flagellar biosy 96.9 0.0034 7.3E-08 61.8 8.3 86 57-155 194-281 (282)
213 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0022 4.8E-08 57.8 6.5 88 54-155 24-118 (166)
214 COG1122 CbiO ABC-type cobalt t 96.9 0.0013 2.7E-08 62.6 5.0 25 54-78 27-51 (235)
215 TIGR02788 VirB11 P-type DNA tr 96.9 0.0056 1.2E-07 61.2 9.8 29 52-80 139-167 (308)
216 cd03238 ABC_UvrA The excision 96.9 0.0026 5.6E-08 57.8 6.7 25 54-78 18-42 (176)
217 COG3839 MalK ABC-type sugar tr 96.9 0.0022 4.7E-08 63.8 6.7 27 53-79 25-51 (338)
218 PF00004 AAA: ATPase family as 96.9 0.0018 3.9E-08 55.6 5.5 22 60-81 1-22 (132)
219 COG1124 DppF ABC-type dipeptid 96.9 0.00058 1.2E-08 63.6 2.4 121 54-175 30-190 (252)
220 TIGR00376 DNA helicase, putati 96.9 0.0025 5.5E-08 69.8 7.8 66 42-109 157-223 (637)
221 PF00580 UvrD-helicase: UvrD/R 96.8 0.0023 4.9E-08 64.1 6.7 68 43-112 1-70 (315)
222 PRK09183 transposase/IS protei 96.8 0.0065 1.4E-07 59.0 9.5 39 54-94 99-137 (259)
223 COG4608 AppF ABC-type oligopep 96.8 0.00075 1.6E-08 64.2 2.9 99 54-156 36-137 (268)
224 TIGR02782 TrbB_P P-type conjug 96.8 0.0042 9.1E-08 61.6 8.3 63 36-99 112-174 (299)
225 PRK08903 DnaA regulatory inact 96.8 0.015 3.1E-07 55.5 11.7 25 56-80 41-65 (227)
226 cd01120 RecA-like_NTPases RecA 96.8 0.0046 9.9E-08 55.1 7.7 35 60-96 2-36 (165)
227 PRK06835 DNA replication prote 96.8 0.014 3.1E-07 58.5 11.7 37 56-94 182-218 (329)
228 PRK13851 type IV secretion sys 96.8 0.0073 1.6E-07 60.8 9.7 47 50-99 155-201 (344)
229 PF01695 IstB_IS21: IstB-like 96.8 0.0059 1.3E-07 55.7 8.2 41 52-94 42-82 (178)
230 KOG1803 DNA helicase [Replicat 96.7 0.0027 5.9E-08 66.2 6.3 64 43-108 186-250 (649)
231 cd03246 ABCC_Protease_Secretio 96.7 0.0046 1E-07 56.2 7.3 28 54-81 25-52 (173)
232 PF00437 T2SE: Type II/IV secr 96.7 0.0053 1.2E-07 60.2 8.1 86 52-156 122-207 (270)
233 PRK06731 flhF flagellar biosyn 96.7 0.023 5.1E-07 55.2 12.2 25 56-80 74-98 (270)
234 PRK08727 hypothetical protein; 96.7 0.0086 1.9E-07 57.3 9.0 36 57-94 41-76 (233)
235 cd01130 VirB11-like_ATPase Typ 96.7 0.017 3.6E-07 53.2 10.6 34 47-80 14-48 (186)
236 PF05621 TniB: Bacterial TniB 96.7 0.01 2.2E-07 57.8 9.3 104 58-172 62-175 (302)
237 PRK13900 type IV secretion sys 96.6 0.0089 1.9E-07 60.1 9.1 45 52-99 155-199 (332)
238 PRK13833 conjugal transfer pro 96.6 0.0043 9.2E-08 61.8 6.4 62 36-99 124-186 (323)
239 COG1121 ZnuC ABC-type Mn/Zn tr 96.6 0.0026 5.7E-08 60.4 4.7 26 54-79 27-52 (254)
240 cd00267 ABC_ATPase ABC (ATP-bi 96.6 0.0093 2E-07 53.2 7.8 87 54-156 22-108 (157)
241 TIGR01425 SRP54_euk signal rec 96.6 0.017 3.8E-07 59.6 10.7 53 58-112 101-155 (429)
242 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.019 4.2E-07 54.5 10.3 27 55-81 36-62 (226)
243 PRK06893 DNA replication initi 96.5 0.016 3.4E-07 55.3 9.6 24 57-80 39-62 (229)
244 TIGR00064 ftsY signal recognit 96.5 0.046 9.9E-07 53.5 12.9 92 57-157 72-165 (272)
245 cd03230 ABC_DR_subfamily_A Thi 96.5 0.0058 1.3E-07 55.5 6.0 27 54-80 23-49 (173)
246 PF12340 DUF3638: Protein of u 96.5 0.025 5.4E-07 53.0 10.2 98 28-130 10-111 (229)
247 cd03214 ABC_Iron-Siderophores_ 96.5 0.0062 1.3E-07 55.7 6.1 112 54-172 22-143 (180)
248 PF02456 Adeno_IVa2: Adenoviru 96.4 0.0032 6.9E-08 60.5 4.0 42 59-100 89-130 (369)
249 cd03228 ABCC_MRP_Like The MRP 96.4 0.0094 2E-07 54.0 7.1 28 54-81 25-52 (171)
250 cd03229 ABC_Class3 This class 96.4 0.0021 4.6E-08 58.7 2.8 27 54-80 23-49 (178)
251 PRK00771 signal recognition pa 96.4 0.043 9.2E-07 57.2 12.6 54 57-112 95-150 (437)
252 PF13555 AAA_29: P-loop contai 96.4 0.0038 8.3E-08 45.5 3.4 23 56-78 22-44 (62)
253 PRK13894 conjugal transfer ATP 96.4 0.0059 1.3E-07 61.0 6.0 62 36-99 128-190 (319)
254 cd03247 ABCC_cytochrome_bd The 96.4 0.0082 1.8E-07 54.8 6.4 27 54-80 25-51 (178)
255 cd03215 ABC_Carb_Monos_II This 96.3 0.014 3.1E-07 53.4 7.9 27 54-80 23-49 (182)
256 PRK11747 dinG ATP-dependent DN 96.3 0.013 2.9E-07 65.1 9.0 64 39-105 22-96 (697)
257 KOG0058 Peptide exporter, ABC 96.3 0.0068 1.5E-07 65.0 6.3 29 52-80 489-517 (716)
258 PRK08084 DNA replication initi 96.3 0.022 4.8E-07 54.5 9.3 37 56-94 44-80 (235)
259 COG1119 ModF ABC-type molybden 96.3 0.0098 2.1E-07 55.7 6.5 31 54-84 54-84 (257)
260 TIGR02868 CydC thiol reductant 96.3 0.017 3.7E-07 62.5 9.5 28 54-81 358-385 (529)
261 PRK08116 hypothetical protein; 96.3 0.074 1.6E-06 51.9 13.0 35 58-94 115-149 (268)
262 COG1484 DnaC DNA replication p 96.3 0.068 1.5E-06 51.7 12.4 52 51-105 99-150 (254)
263 COG3842 PotA ABC-type spermidi 96.3 0.00068 1.5E-08 67.7 -1.5 26 53-78 27-52 (352)
264 PRK00149 dnaA chromosomal repl 96.2 0.031 6.8E-07 59.1 10.9 39 58-96 149-187 (450)
265 COG3840 ThiQ ABC-type thiamine 96.2 0.009 2E-07 53.2 5.5 25 54-78 22-46 (231)
266 COG4555 NatA ABC-type Na+ tran 96.2 0.016 3.5E-07 52.5 7.2 26 54-79 25-50 (245)
267 PRK12402 replication factor C 96.2 0.053 1.1E-06 55.0 12.1 36 46-81 23-60 (337)
268 PRK05642 DNA replication initi 96.2 0.04 8.8E-07 52.6 10.5 35 58-94 46-80 (234)
269 KOG0388 SNF2 family DNA-depend 96.2 0.036 7.9E-07 58.9 10.7 115 280-418 1042-1157(1185)
270 COG4618 ArpD ABC-type protease 96.2 0.00076 1.6E-08 69.0 -1.5 26 53-78 358-383 (580)
271 KOG1802 RNA helicase nonsense 96.2 0.0084 1.8E-07 63.1 6.0 68 41-109 409-476 (935)
272 KOG2373 Predicted mitochondria 96.2 0.0021 4.6E-08 62.4 1.6 115 55-175 271-413 (514)
273 PRK08939 primosomal protein Dn 96.2 0.11 2.3E-06 51.8 13.5 36 56-93 155-190 (306)
274 cd03213 ABCG_EPDR ABCG transpo 96.2 0.016 3.5E-07 53.6 7.3 28 54-81 32-59 (194)
275 PF05496 RuvB_N: Holliday junc 96.1 0.016 3.5E-07 53.9 7.0 24 58-81 51-74 (233)
276 PRK09087 hypothetical protein; 96.1 0.035 7.7E-07 52.7 9.6 22 57-78 44-65 (226)
277 COG1125 OpuBA ABC-type proline 96.1 0.00021 4.6E-09 66.7 -5.3 79 54-144 24-102 (309)
278 COG2256 MGS1 ATPase related to 96.1 0.027 5.8E-07 56.5 8.8 29 52-80 41-71 (436)
279 PF06862 DUF1253: Protein of u 96.1 0.39 8.5E-06 49.8 17.5 124 272-419 289-419 (442)
280 PRK06620 hypothetical protein; 96.1 0.016 3.5E-07 54.5 7.0 20 58-77 45-64 (214)
281 PRK10867 signal recognition pa 96.1 0.078 1.7E-06 55.1 12.5 91 58-156 101-193 (433)
282 PRK14087 dnaA chromosomal repl 96.1 0.058 1.3E-06 56.8 11.7 39 58-96 142-180 (450)
283 COG1199 DinG Rad3-related DNA 96.1 0.017 3.7E-07 64.3 8.2 70 34-106 7-82 (654)
284 COG4962 CpaF Flp pilus assembl 96.0 0.021 4.4E-07 56.4 7.5 55 42-99 157-212 (355)
285 TIGR00604 rad3 DNA repair heli 96.0 0.014 3.1E-07 65.2 7.3 67 42-109 10-82 (705)
286 PRK14956 DNA polymerase III su 96.0 0.044 9.5E-07 57.3 10.1 32 51-82 31-65 (484)
287 TIGR02881 spore_V_K stage V sp 96.0 0.035 7.5E-07 54.1 9.0 23 57-79 42-64 (261)
288 COG0553 HepA Superfamily II DN 96.0 0.017 3.6E-07 66.7 7.9 107 284-417 713-824 (866)
289 COG0630 VirB11 Type IV secreto 96.0 0.029 6.3E-07 55.9 8.5 93 49-156 135-227 (312)
290 PRK07003 DNA polymerase III su 95.9 0.085 1.8E-06 57.8 12.0 32 50-81 28-62 (830)
291 TIGR00362 DnaA chromosomal rep 95.9 0.058 1.3E-06 56.2 10.6 38 58-95 137-174 (405)
292 COG4604 CeuD ABC-type enteroch 95.9 0.08 1.7E-06 48.0 9.7 52 52-103 22-77 (252)
293 PRK06921 hypothetical protein; 95.9 0.15 3.2E-06 49.8 12.6 39 56-95 116-154 (266)
294 PHA02533 17 large terminase pr 95.8 0.072 1.6E-06 57.1 11.3 70 40-109 57-126 (534)
295 PRK11432 fbpC ferric transport 95.8 0.048 1E-06 55.5 9.6 26 54-79 29-54 (351)
296 cd03115 SRP The signal recogni 95.8 0.13 2.8E-06 46.5 11.6 22 59-80 2-23 (173)
297 PF00308 Bac_DnaA: Bacterial d 95.8 0.1 2.2E-06 49.3 11.2 38 58-95 35-72 (219)
298 PRK06645 DNA polymerase III su 95.8 0.047 1E-06 58.0 9.7 29 53-81 36-67 (507)
299 PRK14962 DNA polymerase III su 95.7 0.047 1E-06 57.7 9.3 31 51-81 27-60 (472)
300 PF05127 Helicase_RecD: Helica 95.7 0.015 3.3E-07 52.4 4.8 47 61-108 1-47 (177)
301 COG1126 GlnQ ABC-type polar am 95.7 0.0097 2.1E-07 54.6 3.5 29 53-81 24-52 (240)
302 TIGR02858 spore_III_AA stage I 95.7 0.04 8.7E-07 53.6 8.0 33 49-81 100-135 (270)
303 TIGR03375 type_I_sec_LssB type 95.7 0.057 1.2E-06 60.6 10.4 27 54-80 488-514 (694)
304 PRK08533 flagellar accessory p 95.6 0.046 9.9E-07 52.1 8.1 39 54-94 21-59 (230)
305 PRK14088 dnaA chromosomal repl 95.6 0.061 1.3E-06 56.5 9.7 39 58-96 131-169 (440)
306 PRK14712 conjugal transfer nic 95.6 0.13 2.8E-06 61.4 13.1 64 41-104 834-901 (1623)
307 PRK12377 putative replication 95.6 0.2 4.4E-06 48.1 12.4 35 57-93 101-135 (248)
308 PRK11174 cysteine/glutathione 95.6 0.066 1.4E-06 58.8 10.4 28 54-81 373-400 (588)
309 PRK13709 conjugal transfer nic 95.6 0.17 3.7E-06 61.1 14.2 65 40-104 965-1033(1747)
310 PRK08691 DNA polymerase III su 95.6 0.07 1.5E-06 58.2 10.1 33 49-81 27-62 (709)
311 PRK12323 DNA polymerase III su 95.6 0.042 9.1E-07 59.3 8.2 34 49-82 27-63 (700)
312 cd01122 GP4d_helicase GP4d_hel 95.6 0.13 2.8E-06 50.3 11.3 41 53-94 26-66 (271)
313 COG4181 Predicted ABC-type tra 95.5 0.044 9.5E-07 48.4 6.7 25 54-78 33-57 (228)
314 TIGR01186 proV glycine betaine 95.5 0.072 1.6E-06 54.3 9.5 27 54-80 16-42 (363)
315 TIGR00959 ffh signal recogniti 95.5 0.17 3.6E-06 52.7 12.2 92 58-157 100-193 (428)
316 TIGR02524 dot_icm_DotB Dot/Icm 95.5 0.023 5E-07 57.7 5.8 25 56-80 133-157 (358)
317 COG1135 AbcC ABC-type metal io 95.5 0.092 2E-06 51.0 9.3 50 126-175 139-190 (339)
318 COG1132 MdlB ABC-type multidru 95.5 0.037 8E-07 60.5 7.8 28 54-81 352-379 (567)
319 COG0552 FtsY Signal recognitio 95.5 0.24 5.2E-06 48.8 12.3 90 58-156 140-231 (340)
320 COG3638 ABC-type phosphate/pho 95.4 0.06 1.3E-06 50.2 7.7 26 54-79 27-52 (258)
321 COG4988 CydD ABC-type transpor 95.4 0.046 1E-06 57.5 7.8 27 52-78 342-368 (559)
322 cd01124 KaiC KaiC is a circadi 95.4 0.037 8E-07 50.7 6.5 35 59-95 1-35 (187)
323 TIGR03258 PhnT 2-aminoethylpho 95.4 0.073 1.6E-06 54.4 9.0 26 54-79 28-53 (362)
324 PRK14957 DNA polymerase III su 95.4 0.086 1.9E-06 56.5 9.8 32 50-81 28-62 (546)
325 PRK05973 replicative DNA helic 95.4 0.049 1.1E-06 51.8 7.2 45 48-94 55-99 (237)
326 PRK09536 btuD corrinoid ABC tr 95.4 0.03 6.6E-07 57.8 6.2 26 54-79 26-51 (402)
327 PRK04195 replication factor C 95.4 0.13 2.7E-06 55.0 11.1 25 57-81 39-63 (482)
328 TIGR03796 NHPM_micro_ABC1 NHPM 95.4 0.03 6.4E-07 63.0 6.7 27 54-80 502-528 (710)
329 PRK11607 potG putrescine trans 95.3 0.09 2E-06 54.0 9.6 26 54-79 42-67 (377)
330 COG1444 Predicted P-loop ATPas 95.3 0.072 1.6E-06 58.3 9.1 69 42-110 211-284 (758)
331 COG4136 ABC-type uncharacteriz 95.3 0.019 4.1E-07 49.4 3.7 26 53-78 24-49 (213)
332 PF01637 Arch_ATPase: Archaeal 95.3 0.076 1.6E-06 50.3 8.5 34 48-81 9-44 (234)
333 KOG1805 DNA replication helica 95.3 0.04 8.6E-07 60.8 7.0 67 41-109 668-735 (1100)
334 cd01131 PilT Pilus retraction 95.3 0.021 4.5E-07 53.1 4.4 35 59-94 3-37 (198)
335 TIGR00596 rad1 DNA repair prot 95.3 0.036 7.8E-07 62.1 7.0 25 280-304 293-317 (814)
336 KOG0057 Mitochondrial Fe/S clu 95.3 0.018 3.9E-07 59.8 4.2 28 53-80 374-401 (591)
337 COG4152 ABC-type uncharacteriz 95.3 0.039 8.5E-07 51.6 6.0 26 54-79 25-50 (300)
338 PRK10917 ATP-dependent DNA hel 95.3 0.14 3.1E-06 57.0 11.6 78 282-364 310-388 (681)
339 COG4178 ABC-type uncharacteriz 95.3 0.0078 1.7E-07 64.1 1.6 103 54-156 416-543 (604)
340 PRK00411 cdc6 cell division co 95.3 0.08 1.7E-06 55.0 9.2 24 58-81 56-79 (394)
341 cd01129 PulE-GspE PulE/GspE Th 95.3 0.044 9.5E-07 53.4 6.7 49 44-94 65-115 (264)
342 PF13872 AAA_34: P-loop contai 95.3 0.25 5.4E-06 48.2 11.6 52 58-110 63-114 (303)
343 COG2804 PulE Type II secretory 95.3 0.035 7.5E-07 57.6 6.1 41 41-81 240-282 (500)
344 PRK13657 cyclic beta-1,2-gluca 95.3 0.095 2.1E-06 57.6 10.1 27 54-80 358-384 (588)
345 TIGR00958 3a01208 Conjugate Tr 95.2 0.031 6.6E-07 62.8 6.3 28 54-81 504-531 (711)
346 COG3910 Predicted ATPase [Gene 95.2 0.15 3.3E-06 45.8 9.2 28 56-83 36-63 (233)
347 PRK07994 DNA polymerase III su 95.2 0.091 2E-06 57.3 9.5 33 49-81 27-62 (647)
348 PHA02544 44 clamp loader, smal 95.2 0.28 6E-06 49.2 12.6 34 47-80 30-66 (316)
349 PRK11176 lipid transporter ATP 95.2 0.1 2.2E-06 57.2 10.1 28 54-81 366-393 (582)
350 PLN03025 replication factor C 95.2 0.13 2.7E-06 51.8 9.9 23 58-80 35-57 (319)
351 TIGR02525 plasmid_TraJ plasmid 95.2 0.039 8.5E-07 56.2 6.2 42 55-96 147-188 (372)
352 PRK14960 DNA polymerase III su 95.1 0.1 2.2E-06 56.5 9.4 33 49-81 26-61 (702)
353 PRK14955 DNA polymerase III su 95.1 0.064 1.4E-06 55.7 7.8 32 50-81 28-62 (397)
354 PRK14964 DNA polymerase III su 95.1 0.069 1.5E-06 56.3 8.0 29 52-80 27-58 (491)
355 PRK14949 DNA polymerase III su 95.1 0.19 4.1E-06 56.3 11.6 30 52-81 30-62 (944)
356 COG4615 PvdE ABC-type sideroph 95.1 0.029 6.3E-07 56.0 4.8 26 53-78 345-370 (546)
357 COG1131 CcmA ABC-type multidru 95.1 0.11 2.4E-06 51.4 9.0 26 54-79 28-53 (293)
358 COG2805 PilT Tfp pilus assembl 95.1 0.025 5.4E-07 54.5 4.1 39 57-96 125-163 (353)
359 TIGR02857 CydD thiol reductant 95.1 0.096 2.1E-06 56.7 9.4 27 54-80 345-371 (529)
360 cd03227 ABC_Class2 ABC-type Cl 95.0 0.12 2.5E-06 46.4 8.3 25 57-81 21-45 (162)
361 PRK14086 dnaA chromosomal repl 95.0 0.076 1.6E-06 57.2 8.1 38 58-95 315-352 (617)
362 KOG2340 Uncharacterized conser 95.0 0.11 2.5E-06 53.6 8.8 112 282-417 552-670 (698)
363 PRK11054 helD DNA helicase IV; 95.0 0.067 1.5E-06 59.2 7.8 77 33-112 187-266 (684)
364 PRK13342 recombination factor 95.0 0.1 2.3E-06 54.4 9.0 22 59-80 38-59 (413)
365 COG3845 ABC-type uncharacteriz 95.0 0.17 3.8E-06 52.2 10.0 32 143-174 155-188 (501)
366 KOG0741 AAA+-type ATPase [Post 95.0 0.085 1.8E-06 54.6 7.8 70 58-156 539-608 (744)
367 cd00820 PEPCK_HprK Phosphoenol 95.0 0.016 3.5E-07 47.5 2.2 25 54-78 12-36 (107)
368 PRK10522 multidrug transporter 95.0 0.057 1.2E-06 58.8 7.2 26 54-79 346-371 (547)
369 KOG0989 Replication factor C, 95.0 0.15 3.2E-06 49.5 8.9 35 46-80 40-80 (346)
370 COG4586 ABC-type uncharacteriz 94.9 0.15 3.3E-06 48.6 8.8 44 54-97 47-90 (325)
371 TIGR02760 TraI_TIGR conjugativ 94.9 0.2 4.2E-06 62.1 12.2 64 40-104 1017-1085(1960)
372 TIGR01842 type_I_sec_PrtD type 94.9 0.058 1.3E-06 58.7 7.0 27 54-80 341-367 (544)
373 COG4525 TauB ABC-type taurine 94.8 0.021 4.6E-07 51.5 2.8 29 50-78 24-52 (259)
374 COG1127 Ttg2A ABC-type transpo 94.8 0.045 9.7E-07 51.2 5.0 29 53-81 30-58 (263)
375 PRK11160 cysteine/glutathione 94.8 0.1 2.2E-06 57.1 8.7 29 53-81 362-390 (574)
376 TIGR02204 MsbA_rel ABC transpo 94.8 0.15 3.3E-06 55.8 10.1 28 54-81 363-390 (576)
377 PRK14961 DNA polymerase III su 94.8 0.13 2.9E-06 52.6 9.0 31 51-81 29-62 (363)
378 TIGR01420 pilT_fam pilus retra 94.8 0.043 9.3E-07 55.7 5.3 39 56-95 121-159 (343)
379 PRK10789 putative multidrug tr 94.8 0.15 3.3E-06 55.7 9.9 27 54-80 338-364 (569)
380 PF00931 NB-ARC: NB-ARC domain 94.7 0.097 2.1E-06 51.6 7.6 32 49-80 7-42 (287)
381 COG3267 ExeA Type II secretory 94.7 0.36 7.7E-06 45.7 10.6 31 50-81 43-74 (269)
382 PRK14963 DNA polymerase III su 94.7 0.2 4.3E-06 53.5 10.2 23 59-81 38-60 (504)
383 PRK12422 chromosomal replicati 94.7 0.17 3.6E-06 53.2 9.5 36 58-95 142-177 (445)
384 PF00005 ABC_tran: ABC transpo 94.7 0.019 4E-07 49.8 2.1 25 54-78 8-32 (137)
385 COG2274 SunT ABC-type bacterio 94.7 0.064 1.4E-06 59.4 6.6 26 53-78 495-520 (709)
386 TIGR03797 NHPM_micro_ABC2 NHPM 94.7 0.051 1.1E-06 60.9 6.1 27 54-80 476-502 (686)
387 PRK10436 hypothetical protein; 94.7 0.074 1.6E-06 55.9 6.8 50 43-94 202-253 (462)
388 cd01393 recA_like RecA is a b 94.6 0.07 1.5E-06 50.7 6.1 42 55-96 17-62 (226)
389 TIGR02880 cbbX_cfxQ probable R 94.6 0.09 2E-06 51.8 7.0 22 57-78 58-79 (284)
390 TIGR02203 MsbA_lipidA lipid A 94.6 0.23 5.1E-06 54.3 10.9 28 53-80 354-381 (571)
391 TIGR02012 tigrfam_recA protein 94.6 0.086 1.9E-06 52.5 6.7 45 55-101 53-97 (321)
392 KOG0054 Multidrug resistance-a 94.6 0.15 3.2E-06 59.9 9.5 27 54-80 1163-1189(1381)
393 COG2255 RuvB Holliday junction 94.6 0.079 1.7E-06 50.8 6.0 24 58-81 53-76 (332)
394 PRK10790 putative multidrug tr 94.6 0.18 3.9E-06 55.5 9.9 28 54-81 364-391 (592)
395 PRK14951 DNA polymerase III su 94.6 0.22 4.8E-06 54.2 10.3 30 52-81 30-62 (618)
396 PRK09111 DNA polymerase III su 94.6 0.22 4.8E-06 54.2 10.3 32 50-81 36-70 (598)
397 TIGR01193 bacteriocin_ABC ABC- 94.6 0.069 1.5E-06 60.1 6.8 27 54-80 497-523 (708)
398 cd01123 Rad51_DMC1_radA Rad51_ 94.5 0.053 1.1E-06 51.8 5.1 28 54-81 16-43 (235)
399 PRK14958 DNA polymerase III su 94.5 0.089 1.9E-06 56.2 7.1 33 49-81 27-62 (509)
400 PRK11823 DNA repair protein Ra 94.5 0.061 1.3E-06 56.5 5.8 90 55-157 78-167 (446)
401 PF13207 AAA_17: AAA domain; P 94.5 0.031 6.7E-07 47.2 3.0 23 59-81 1-23 (121)
402 TIGR00635 ruvB Holliday juncti 94.5 0.12 2.7E-06 51.5 7.8 23 58-80 31-53 (305)
403 PF01443 Viral_helicase1: Vira 94.5 0.041 8.9E-07 52.5 4.1 22 60-81 1-22 (234)
404 TIGR01192 chvA glucan exporter 94.5 0.2 4.4E-06 54.9 9.9 27 54-80 358-384 (585)
405 PHA03333 putative ATPase subun 94.4 0.22 4.8E-06 53.8 9.7 57 55-112 185-241 (752)
406 TIGR01846 type_I_sec_HlyB type 94.4 0.19 4.1E-06 56.4 9.9 27 54-80 480-506 (694)
407 TIGR03238 dnd_assoc_3 dnd syst 94.4 0.044 9.5E-07 56.9 4.3 32 44-75 12-50 (504)
408 cd01121 Sms Sms (bacterial rad 94.4 0.086 1.9E-06 53.9 6.4 39 55-95 80-118 (372)
409 PLN03232 ABC transporter C fam 94.4 0.063 1.4E-06 65.2 6.3 27 54-80 1259-1285(1495)
410 KOG2028 ATPase related to the 94.4 0.12 2.6E-06 51.1 6.9 29 53-81 156-186 (554)
411 PRK10919 ATP-dependent DNA hel 94.4 0.073 1.6E-06 59.2 6.3 69 42-112 2-72 (672)
412 COG1474 CDC6 Cdc6-related prot 94.3 0.2 4.3E-06 51.2 8.8 23 58-80 43-65 (366)
413 PTZ00293 thymidine kinase; Pro 94.3 0.036 7.9E-07 51.4 3.2 39 56-96 3-41 (211)
414 TIGR03263 guanyl_kin guanylate 94.3 0.036 7.9E-07 50.5 3.2 24 57-80 1-24 (180)
415 COG4619 ABC-type uncharacteriz 94.3 0.035 7.6E-07 48.9 2.8 30 53-82 25-54 (223)
416 TIGR01166 cbiO cobalt transpor 94.3 0.031 6.8E-07 51.5 2.7 26 54-79 15-40 (190)
417 COG4133 CcmA ABC-type transpor 94.3 0.034 7.3E-07 50.0 2.7 25 54-78 25-49 (209)
418 PRK14952 DNA polymerase III su 94.3 0.48 1E-05 51.4 12.0 32 50-81 25-59 (584)
419 PRK00080 ruvB Holliday junctio 94.2 0.1 2.2E-06 52.7 6.6 24 58-81 52-75 (328)
420 PF05707 Zot: Zonular occluden 94.2 0.37 8.1E-06 44.5 9.8 22 59-80 2-24 (193)
421 PLN03130 ABC transporter C fam 94.2 0.078 1.7E-06 64.7 6.5 99 54-155 1262-1401(1622)
422 PF00265 TK: Thymidine kinase; 94.2 0.038 8.2E-07 50.1 2.9 38 57-96 1-38 (176)
423 PF03969 AFG1_ATPase: AFG1-lik 94.2 0.78 1.7E-05 46.8 12.7 90 56-169 61-150 (362)
424 TIGR02640 gas_vesic_GvpN gas v 94.1 0.067 1.4E-06 52.1 4.8 35 45-79 9-43 (262)
425 COG1110 Reverse gyrase [DNA re 94.1 0.15 3.2E-06 56.9 7.8 74 274-350 117-190 (1187)
426 PRK00300 gmk guanylate kinase; 94.1 0.041 8.8E-07 51.4 3.2 26 55-80 3-28 (205)
427 KOG1131 RNA polymerase II tran 94.1 0.44 9.5E-06 49.3 10.5 33 46-78 24-57 (755)
428 TIGR02928 orc1/cdc6 family rep 94.1 0.19 4E-06 51.6 8.3 24 454-477 326-349 (365)
429 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.1 0.035 7.5E-07 52.4 2.6 27 54-80 27-53 (218)
430 cd03226 ABC_cobalt_CbiO_domain 94.1 0.035 7.6E-07 51.9 2.6 27 54-80 23-49 (205)
431 PF03354 Terminase_1: Phage Te 94.0 0.44 9.5E-06 50.8 11.2 67 45-111 1-78 (477)
432 TIGR00150 HI0065_YjeE ATPase, 94.0 0.065 1.4E-06 46.0 3.9 46 49-99 14-59 (133)
433 PRK05580 primosome assembly pr 94.0 0.11 2.4E-06 57.8 6.8 74 282-364 190-263 (679)
434 cd03269 ABC_putative_ATPase Th 94.0 0.038 8.2E-07 51.8 2.7 27 54-80 23-49 (210)
435 PRK09354 recA recombinase A; P 94.0 0.13 2.9E-06 51.6 6.7 45 55-101 58-102 (349)
436 PRK10078 ribose 1,5-bisphospho 94.0 0.046 9.9E-07 50.3 3.2 24 57-80 2-25 (186)
437 TIGR00954 3a01203 Peroxysomal 94.0 0.093 2E-06 58.3 6.1 27 54-80 475-501 (659)
438 PRK14954 DNA polymerase III su 94.0 0.22 4.7E-06 54.4 8.7 32 50-81 28-62 (620)
439 TIGR02688 conserved hypothetic 94.0 0.22 4.8E-06 51.0 8.2 26 52-77 204-229 (449)
440 COG1123 ATPase components of v 94.0 0.052 1.1E-06 57.2 3.8 26 54-79 314-339 (539)
441 cd03292 ABC_FtsE_transporter F 93.9 0.04 8.7E-07 51.8 2.7 27 54-80 24-50 (214)
442 PRK15177 Vi polysaccharide exp 93.9 0.041 8.8E-07 51.8 2.7 27 54-80 10-36 (213)
443 cd03258 ABC_MetN_methionine_tr 93.9 0.041 8.8E-07 52.6 2.7 27 54-80 28-54 (233)
444 PLN03232 ABC transporter C fam 93.9 0.13 2.8E-06 62.6 7.5 99 54-155 640-767 (1495)
445 TIGR00957 MRP_assoc_pro multi 93.9 0.1 2.2E-06 63.6 6.6 27 54-80 1309-1335(1522)
446 cd03225 ABC_cobalt_CbiO_domain 93.9 0.04 8.6E-07 51.8 2.6 27 54-80 24-50 (211)
447 KOG2228 Origin recognition com 93.9 0.86 1.9E-05 44.9 11.5 96 56-160 48-151 (408)
448 CHL00176 ftsH cell division pr 93.9 0.25 5.4E-06 54.2 9.0 24 58-81 217-240 (638)
449 cd03259 ABC_Carb_Solutes_like 93.9 0.042 9E-07 51.7 2.7 26 54-79 23-48 (213)
450 KOG0349 Putative DEAD-box RNA 93.8 0.019 4.2E-07 57.4 0.4 47 31-77 13-61 (725)
451 TIGR02238 recomb_DMC1 meiotic 93.8 0.11 2.4E-06 51.8 5.8 39 56-94 95-137 (313)
452 PRK13341 recombination factor 93.8 0.3 6.5E-06 54.4 9.7 23 58-80 53-75 (725)
453 TIGR02533 type_II_gspE general 93.8 0.11 2.4E-06 55.2 6.0 50 43-94 226-277 (486)
454 TIGR02673 FtsE cell division A 93.8 0.043 9.4E-07 51.6 2.7 27 54-80 25-51 (214)
455 TIGR03608 L_ocin_972_ABC putat 93.8 0.042 9E-07 51.4 2.6 27 54-80 21-47 (206)
456 KOG1970 Checkpoint RAD17-RFC c 93.8 0.08 1.7E-06 55.2 4.7 28 56-83 109-136 (634)
457 COG0396 sufC Cysteine desulfur 93.8 0.056 1.2E-06 50.2 3.3 29 54-82 27-55 (251)
458 COG2884 FtsE Predicted ATPase 93.8 0.065 1.4E-06 48.3 3.6 30 53-82 24-53 (223)
459 TIGR00960 3a0501s02 Type II (G 93.8 0.042 9.2E-07 51.8 2.6 27 54-80 26-52 (216)
460 TIGR00580 mfd transcription-re 93.8 0.35 7.5E-06 55.5 10.2 78 282-364 500-578 (926)
461 PF13671 AAA_33: AAA domain; P 93.8 0.059 1.3E-06 46.9 3.3 23 59-81 1-23 (143)
462 PF02367 UPF0079: Uncharacteri 93.8 0.072 1.6E-06 45.0 3.6 36 47-82 5-40 (123)
463 cd03265 ABC_DrrA DrrA is the A 93.7 0.045 9.8E-07 51.8 2.7 26 54-79 23-48 (220)
464 PRK14969 DNA polymerase III su 93.7 0.43 9.4E-06 51.3 10.4 33 49-81 27-62 (527)
465 cd03261 ABC_Org_Solvent_Resist 93.7 0.044 9.6E-07 52.4 2.6 27 54-80 23-49 (235)
466 PF12846 AAA_10: AAA-like doma 93.7 0.066 1.4E-06 53.1 4.0 42 57-100 1-42 (304)
467 PRK13541 cytochrome c biogenes 93.7 0.047 1E-06 50.6 2.7 28 54-81 23-50 (195)
468 PRK04301 radA DNA repair and r 93.7 0.11 2.4E-06 52.2 5.6 27 55-81 100-126 (317)
469 cd03235 ABC_Metallic_Cations A 93.7 0.043 9.2E-07 51.6 2.4 26 54-79 22-47 (213)
470 cd03282 ABC_MSH4_euk MutS4 hom 93.7 0.077 1.7E-06 49.5 4.1 23 56-78 28-50 (204)
471 TIGR00643 recG ATP-dependent D 93.7 0.43 9.4E-06 52.7 10.7 78 282-364 284-362 (630)
472 TIGR02655 circ_KaiC circadian 93.7 0.15 3.3E-06 54.4 6.8 38 55-94 261-298 (484)
473 COG1117 PstB ABC-type phosphat 93.7 0.05 1.1E-06 49.9 2.7 28 53-80 29-56 (253)
474 cd03301 ABC_MalK_N The N-termi 93.7 0.047 1E-06 51.3 2.7 27 54-80 23-49 (213)
475 cd03293 ABC_NrtD_SsuB_transpor 93.6 0.043 9.4E-07 51.9 2.4 26 54-79 27-52 (220)
476 PRK14948 DNA polymerase III su 93.6 0.34 7.3E-06 53.1 9.5 32 50-81 28-62 (620)
477 TIGR00595 priA primosomal prot 93.6 0.14 3E-06 54.9 6.4 74 282-364 25-98 (505)
478 cd03224 ABC_TM1139_LivF_branch 93.6 0.044 9.6E-07 51.9 2.5 26 54-79 23-48 (222)
479 PTZ00112 origin recognition co 93.6 0.97 2.1E-05 50.6 12.7 20 59-78 783-802 (1164)
480 COG1219 ClpX ATP-dependent pro 93.6 0.05 1.1E-06 52.8 2.7 22 57-78 97-118 (408)
481 PRK09112 DNA polymerase III su 93.6 0.44 9.4E-06 48.4 9.7 34 47-80 32-68 (351)
482 TIGR02315 ABC_phnC phosphonate 93.6 0.048 1E-06 52.5 2.7 26 54-79 25-50 (243)
483 PRK10247 putative ABC transpor 93.6 0.049 1.1E-06 51.7 2.8 27 54-80 30-56 (225)
484 COG4167 SapF ABC-type antimicr 93.6 0.092 2E-06 46.9 4.1 25 54-78 36-60 (267)
485 cd03268 ABC_BcrA_bacitracin_re 93.6 0.049 1.1E-06 51.0 2.6 27 54-80 23-49 (208)
486 PRK13539 cytochrome c biogenes 93.6 0.05 1.1E-06 50.9 2.7 27 54-80 25-51 (207)
487 TIGR00678 holB DNA polymerase 93.6 0.49 1.1E-05 43.4 9.2 31 50-80 4-37 (188)
488 TIGR02322 phosphon_PhnN phosph 93.5 0.062 1.3E-06 49.0 3.2 24 57-80 1-24 (179)
489 cd03219 ABC_Mj1267_LivG_branch 93.5 0.048 1E-06 52.2 2.5 26 54-79 23-48 (236)
490 cd03257 ABC_NikE_OppD_transpor 93.5 0.05 1.1E-06 51.7 2.7 27 54-80 28-54 (228)
491 PF13871 Helicase_C_4: Helicas 93.5 0.075 1.6E-06 51.5 3.8 63 332-404 52-114 (278)
492 PRK13764 ATPase; Provisional 93.5 0.12 2.7E-06 55.8 5.8 45 50-96 249-294 (602)
493 cd03262 ABC_HisP_GlnQ_permease 93.5 0.052 1.1E-06 51.0 2.7 27 54-80 23-49 (213)
494 cd03263 ABC_subfamily_A The AB 93.5 0.052 1.1E-06 51.3 2.7 27 54-80 25-51 (220)
495 PRK10584 putative ABC transpor 93.5 0.052 1.1E-06 51.7 2.7 27 54-80 33-59 (228)
496 TIGR02211 LolD_lipo_ex lipopro 93.5 0.052 1.1E-06 51.4 2.7 27 54-80 28-54 (221)
497 COG0541 Ffh Signal recognition 93.5 0.99 2.1E-05 46.2 11.6 99 58-163 101-199 (451)
498 PTZ00265 multidrug resistance 93.5 0.13 2.9E-06 62.1 6.6 28 54-81 1191-1218(1466)
499 cd03237 ABC_RNaseL_inhibitor_d 93.4 0.057 1.2E-06 52.0 2.9 27 54-80 22-48 (246)
500 TIGR01978 sufC FeS assembly AT 93.4 0.053 1.1E-06 52.2 2.7 27 54-80 23-49 (243)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-98 Score=755.97 Aligned_cols=477 Identities=56% Similarity=0.905 Sum_probs=460.1
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 30 RRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 30 ~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
....+..+|..||++++..+++..+.++++++|+|+|||||||++|+++++.++...|. |.|++|+|.+|..++++++.
T Consensus 39 ~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~-I~~TQPRRVAavslA~RVAe 117 (674)
T KOG0922|consen 39 TNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGK-IACTQPRRVAAVSLAKRVAE 117 (674)
T ss_pred cccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCc-EEeecCchHHHHHHHHHHHH
Confidence 45567788899999999999999999999999999999999999999999999988876 99999999999999999999
Q ss_pred HhCCccCCEEEEEEecCCCCCchhhHH---------HhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccc
Q 008735 110 ESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 180 (555)
Q Consensus 110 ~~~~~~~~~vg~~~~~~~~~~~~~~i~---------~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~ 180 (555)
+.+..+|..|||.++++..++..|+++ +++.||.++++++||+||||||+..+|.++++||+++.+|
T Consensus 118 E~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R---- 193 (674)
T KOG0922|consen 118 EMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR---- 193 (674)
T ss_pred HhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC----
Confidence 999999999999999999998888765 7788999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCCccccceEEEcCC
Q 008735 181 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLY 260 (555)
Q Consensus 181 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 260 (555)
+++|+|+||||+|.+.|.+||++++++.++|+.+|+++.|...
T Consensus 194 -------------------------------------~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~ 236 (674)
T KOG0922|consen 194 -------------------------------------PDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKE 236 (674)
T ss_pred -------------------------------------CCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccC
Confidence 8999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCC
Q 008735 261 PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG 340 (555)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g 340 (555)
+..+|++..+..+.+++.++++|.||||++++++++.+++.|.+.......+.+. .+.++||.|+.++|.+||...+.|
T Consensus 237 p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g 315 (674)
T KOG0922|consen 237 PTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPG 315 (674)
T ss_pred CchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCC
Confidence 9999999999999999999999999999999999999999999987766655555 789999999999999999999999
Q ss_pred CcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHhcc
Q 008735 341 FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKL 420 (555)
Q Consensus 341 ~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~ 420 (555)
.+|||+|||++|++++||+|.||||+|+.|.+.|++..|+..|...|+|++++.||+|||||.++|+||+||++++|+.|
T Consensus 316 ~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~ 395 (674)
T KOG0922|consen 316 KRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKM 395 (674)
T ss_pred cceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCchHHHHHHhhcCCCCccCCcCCCCCcHHHHHHHHHHHHHcCCccCCCCCCHHHHhhcccCCCChHHHH
Q 008735 421 EDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSK 500 (555)
Q Consensus 421 ~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~~~~~~ 500 (555)
+..+.|||.|++|...+|++|++|++|+..|+|++||+.+++..|++.|..+|+||++|.+|.|+|+.|+.+|++|.++|
T Consensus 396 ~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk 475 (674)
T KOG0922|consen 396 PLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSK 475 (674)
T ss_pred ccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHhhhcCCHHHHHHHHHhhcCCCcccCChhhHHH-HHHHhhhccCCCC
Q 008735 501 ALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRR-GKKCNEIFCKSRW 549 (555)
Q Consensus 501 ~l~~~~~~~~~~~~l~i~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 549 (555)
+++.+..++|++++++|+|+||++++|.+|.+.+.. ++..|++|....-
T Consensus 476 ~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eG 525 (674)
T KOG0922|consen 476 MLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFANPEG 525 (674)
T ss_pred hhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhcCccc
Confidence 999999999999999999999999999999998777 9999999988765
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-96 Score=737.37 Aligned_cols=480 Identities=54% Similarity=0.895 Sum_probs=463.6
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 30 RRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 30 ~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
+...+...|+.||++.+..+++.++..+++++|+|.|||||||++||++.+.++..+++.|.|++|+|.+|..++.++++
T Consensus 253 ~~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~ 332 (902)
T KOG0923|consen 253 RRESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAE 332 (902)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHH
Confidence 45566677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCccCCEEEEEEecCCCCCchhhHH---------HhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccc
Q 008735 110 ESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 180 (555)
Q Consensus 110 ~~~~~~~~~vg~~~~~~~~~~~~~~i~---------~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~ 180 (555)
+++..+|..|||.++++..++..+.++ +++.+|.|..+++|||||||||+..+|+|++++|++...|
T Consensus 333 EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R---- 408 (902)
T KOG0923|consen 333 EMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR---- 408 (902)
T ss_pred HhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC----
Confidence 999999999999999999988777655 7788999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCCccccceEEEcCC
Q 008735 181 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLY 260 (555)
Q Consensus 181 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 260 (555)
++++++++|||+|+++|..||+++|++.++|+.|||+++|...
T Consensus 409 -------------------------------------pdLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~ 451 (902)
T KOG0923|consen 409 -------------------------------------PDLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKA 451 (902)
T ss_pred -------------------------------------CcceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccC
Confidence 9999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCC
Q 008735 261 PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG 340 (555)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g 340 (555)
|..+|+++.+..+++++.+++.|.||||+.+.++++.+.+.|.+.+..+......+.+.++|+++|.+.|.+||++.++|
T Consensus 452 PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~g 531 (902)
T KOG0923|consen 452 PEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPG 531 (902)
T ss_pred CchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCC
Confidence 99999999999999999999999999999999999999999999998888888899999999999999999999999999
Q ss_pred CcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHhc-
Q 008735 341 FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK- 419 (555)
Q Consensus 341 ~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~- 419 (555)
.+|||+|||+||++++|++|.||||.|++|...|+|.+||.++...|+|++++.||+|||||.|||+||+||+.-.|+.
T Consensus 532 aRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~e 611 (902)
T KOG0923|consen 532 ARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHE 611 (902)
T ss_pred ceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccCCCCCcccccCchHHHHHHhhcCCCCccCCcCCCCCcHHHHHHHHHHHHHcCCccCCCCCCHHHHhhcccCCCChHHH
Q 008735 420 LEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYS 499 (555)
Q Consensus 420 ~~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~~~~~ 499 (555)
+...+.|||+|.+|..++|.|+++|+.++.+|+|++||+.+++..|+++|+.+||++..|++|. +|+.|+++|++|.++
T Consensus 612 LE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLTk-~GrrMaEfP~dPmls 690 (902)
T KOG0923|consen 612 LEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHLGELTK-LGRRMAEFPVDPMLS 690 (902)
T ss_pred hccCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhccccccchhh-hhhhhhhcCCCHHHH
Confidence 7888889999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCHHHHHHHHHhhcCC-CcccCChhhHHHHHHHhhhccCCCCCCCC
Q 008735 500 KALIVAGQFNCLEEMLITVAMLSVE-SIFFRSPGEVRRGKKCNEIFCKSRWRSPH 553 (555)
Q Consensus 500 ~~l~~~~~~~~~~~~l~i~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (555)
|||+.+..+.|.+++++|+||||+. ++|.+|.++...|+.+++.|..+ .++|
T Consensus 691 Kmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~--~gDh 743 (902)
T KOG0923|consen 691 KMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEP--VGDH 743 (902)
T ss_pred hHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCC--Ccch
Confidence 9999999999999999999999998 69999999999999999999776 4565
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-91 Score=698.72 Aligned_cols=472 Identities=51% Similarity=0.872 Sum_probs=452.2
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCC
Q 008735 34 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGV 113 (555)
Q Consensus 34 ~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~ 113 (555)
..+++..||++..+++++..|..+++++|+|.|||||||++++++++.++...| .|.|++|+|.+|+.++++++.+++.
T Consensus 348 i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~G-mIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 348 IREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNG-MIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred HHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCC-eeeecCchHHHHHHHHHHHHHHhCC
Confidence 678899999999999999999999999999999999999999999999998776 7999999999999999999999999
Q ss_pred ccCCEEEEEEecCCCCCchhhHH---------HhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCC
Q 008735 114 ELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHS 184 (555)
Q Consensus 114 ~~~~~vg~~~~~~~~~~~~~~i~---------~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~ 184 (555)
.+|..|||.++|+..++..++|+ +.+.+..|.++++||+||||||+.++|.+++++|.++.+|
T Consensus 427 ~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larR-------- 498 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARR-------- 498 (1042)
T ss_pred ccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhh--------
Confidence 99999999999999988888765 5666788999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCCccccceEEEcCCCCCC
Q 008735 185 NGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPD 264 (555)
Q Consensus 185 ~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 264 (555)
.++++|.+|||++.+.|+.|||++|.+.++|+.|||++.|...+..+
T Consensus 499 ---------------------------------rdlKliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eD 545 (1042)
T KOG0924|consen 499 ---------------------------------RDLKLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVED 545 (1042)
T ss_pred ---------------------------------ccceEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchHH
Confidence 89999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCC-CCCeEEEEecCCCCHHHHHhhcCcCCCCCcE
Q 008735 265 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA-SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRK 343 (555)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~-~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~ 343 (555)
|++..+...+.++....+|.+|||.+++++++-.+..+...+.++... ..++.|.++|+.||.+-|.++|+....|.+|
T Consensus 546 YVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK 625 (1042)
T KOG0924|consen 546 YVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRK 625 (1042)
T ss_pred HHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCcee
Confidence 999999999999999989999999999999999999998887654322 2488999999999999999999999999999
Q ss_pred EEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHhc-ccC
Q 008735 344 VILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LED 422 (555)
Q Consensus 344 vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~-~~~ 422 (555)
||||||+||+++++|++.||||+|+.|.++|++..|+..|...|+|.+++.||+|||||.|+|.||++|+++.|.. |.+
T Consensus 626 ~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 626 CIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred EEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988864 999
Q ss_pred CCCCcccccCchHHHHHHhhcCCCCccCCcCCCCCcHHHHHHHHHHHHHcCCccCCCCCCHHHHhhcccCCCChHHHHHH
Q 008735 423 STKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKAL 502 (555)
Q Consensus 423 ~~~pei~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~~~~~~~l 502 (555)
.++|||+|.+|..++|.|+++|++++..|+|++||+.+.+..++-.|-.+|||+..|.+|+ +|+.|+.+|++|.++|||
T Consensus 706 stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g~LT~-lG~~MvefpLDP~lsKml 784 (1042)
T KOG0924|consen 706 STVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTGQLTP-LGRKMVEFPLDPPLSKML 784 (1042)
T ss_pred CCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCCccch-hhHHhhhCCCCchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997 999999999999999999
Q ss_pred HHhhhcCCHHHHHHHHHhhcCCCcccCChhhHHHHHHHhhhccCCC
Q 008735 503 IVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRGKKCNEIFCKSR 548 (555)
Q Consensus 503 ~~~~~~~~~~~~l~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (555)
+-+..++|.+|+|+|++|||+...|.+|.+..+.++.+|.+|+.+.
T Consensus 785 l~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~~ 830 (1042)
T KOG0924|consen 785 LMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVPE 830 (1042)
T ss_pred HHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCCC
Confidence 9999999999999999999999999999999999999999998764
No 4
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-88 Score=653.27 Aligned_cols=485 Identities=50% Similarity=0.805 Sum_probs=459.8
Q ss_pred CCCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHH
Q 008735 20 SKPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 98 (555)
Q Consensus 20 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~ 98 (555)
.+||.+.+ ++++.+++++|..||+|.+++++++.+.+++.++++|.|||||||++|+|..+...... ..+.|++|+|.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-~~v~CTQprrv 102 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-TGVACTQPRRV 102 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-cceeecCchHH
Confidence 67777777 77899999999999999999999999999999999999999999999999988766544 56999999999
Q ss_pred HHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhHH---------HhhcCCCCCCCceeEeecccccccchhHHHHHH
Q 008735 99 AAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLL 169 (555)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~---------~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l 169 (555)
++.+++++++++++..+|..|||.++++...+..+.++ +...+|.+..+++||+||+|||+..+|.+++++
T Consensus 103 aamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGll 182 (699)
T KOG0925|consen 103 AAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLL 182 (699)
T ss_pred HHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999998887765 667789999999999999999999999999999
Q ss_pred HHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCCc
Q 008735 170 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGR 249 (555)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~ 249 (555)
|+++..| +++++|.||||++..+|..||+++|++.++|
T Consensus 183 k~v~~~r-----------------------------------------pdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg- 220 (699)
T KOG0925|consen 183 KEVVRNR-----------------------------------------PDLKLVVMSATLDAEKFQRYFGNAPLLAVPG- 220 (699)
T ss_pred HHHHhhC-----------------------------------------CCceEEEeecccchHHHHHHhCCCCeeecCC-
Confidence 9999998 9999999999999999999999999999999
Q ss_pred cccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHH
Q 008735 250 QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 329 (555)
Q Consensus 250 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 329 (555)
.+|++++|...+..++++.++..+++++..+.+|.+|||+++.++++.+++.+......+....+.+.+.++| +.+
T Consensus 221 ~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~ 296 (699)
T KOG0925|consen 221 THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQ 296 (699)
T ss_pred CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chh
Confidence 8999999999999999999999999999999999999999999999999999998888888888899999999 666
Q ss_pred HHhhcCcCCCC-----CcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC
Q 008735 330 QMRVFAPAAAG-----FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 404 (555)
Q Consensus 330 r~~i~~~f~~g-----~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~ 404 (555)
+..+|+..+.. .+||+|+|+++|.++++++|.+|||.|+.++++|+|.-+..++...|+|++++.||+|||||..
T Consensus 297 qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~ 376 (699)
T KOG0925|consen 297 QQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 376 (699)
T ss_pred hccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC
Confidence 77888776532 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccChhhHhc-ccCCCCCcccccCchHHHHHHhhcCCCCccCCcCCCCCcHHHHHHHHHHHHHcCCccCCCCCCH
Q 008735 405 PGKCFRLYPENEFDK-LEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSD 483 (555)
Q Consensus 405 ~G~~~~l~~~~~~~~-~~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~l~~~~~~T~ 483 (555)
+|+||+||+++.|+. +.+.+.|||++++|.+.+|++|.+|++++..|+|++||.++++.+|++.|-.++++|++|++|+
T Consensus 377 pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~ 456 (699)
T KOG0925|consen 377 PGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLTS 456 (699)
T ss_pred CCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccch
Confidence 999999999999986 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhcccCCCChHHHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCCh-hhHHHHHHHhhhccCCCCCCCCC
Q 008735 484 PVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSP-GEVRRGKKCNEIFCKSRWRSPHF 554 (555)
Q Consensus 484 ~lG~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~i~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 554 (555)
+|..|+.+|++|.+||||+.+..|+|..|+|+|+|+||+.+.|.+|. +.+++|+++++.|.|.. .||+
T Consensus 457 -lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH~d--GDHl 525 (699)
T KOG0925|consen 457 -LGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAHID--GDHL 525 (699)
T ss_pred -hhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhccCC--cchH
Confidence 99999999999999999999999999999999999999999999998 78999999999999875 4554
No 5
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.2e-86 Score=710.32 Aligned_cols=458 Identities=50% Similarity=0.799 Sum_probs=435.5
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 30 RRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 30 ~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
........+..||++.+..+++.++.+++.++|+|||||||||++|+++++.++ ..++.|++++|+|.+|..+++++++
T Consensus 38 ~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-~~~g~I~~tQPRRlAArsvA~RvAe 116 (845)
T COG1643 38 NVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-GIAGKIGCTQPRRLAARSVAERVAE 116 (845)
T ss_pred ccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-ccCCeEEecCchHHHHHHHHHHHHH
Confidence 456678888999999999999999999999999999999999999999999988 3455899999999999999999999
Q ss_pred HhCCccCCEEEEEEecCCCCCchhhHH---------HhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccc
Q 008735 110 ESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 180 (555)
Q Consensus 110 ~~~~~~~~~vg~~~~~~~~~~~~~~i~---------~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~ 180 (555)
+++..+|..|||.+++++.++..|+++ +++.|+.++.+++|||||+|||+.++|++++++++++..|+
T Consensus 117 el~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr--- 193 (845)
T COG1643 117 ELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRR--- 193 (845)
T ss_pred HhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC---
Confidence 999999999999999999998888776 66779999999999999999999999999999999888772
Q ss_pred cCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCCccccceEEEcCC
Q 008735 181 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLY 260 (555)
Q Consensus 181 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 260 (555)
+++|+|+||||+|.+.|++||+++|++.++|+.|||+++|...
T Consensus 194 -------------------------------------~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~ 236 (845)
T COG1643 194 -------------------------------------DDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPE 236 (845)
T ss_pred -------------------------------------CCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCC
Confidence 5799999999999999999999999999999999999999888
Q ss_pred CCCCh-HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHH-HhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCC
Q 008735 261 PEPDY-LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQE-RLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAA 338 (555)
Q Consensus 261 ~~~~~-~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~-~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~ 338 (555)
...++ ++..+...+.++..+..|.+|||+|+..+++.+++.|++ .+. ..+.+.++||.|+.++|.++|+...
T Consensus 237 ~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~------~~~~i~PLy~~L~~~eQ~rvF~p~~ 310 (845)
T COG1643 237 AEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELG------DDLEILPLYGALSAEEQVRVFEPAP 310 (845)
T ss_pred CCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhcccc------CCcEEeeccccCCHHHHHhhcCCCC
Confidence 88888 888999999999999999999999999999999999998 221 3789999999999999999999999
Q ss_pred CCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHh
Q 008735 339 AGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 418 (555)
Q Consensus 339 ~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 418 (555)
.|++|||+||||+|+|++||+|++|||+|+.+.++||+.+|+..+.+.|+|++++.||+|||||.++|+||+||++++|+
T Consensus 311 ~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 311 GGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred CCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccccCchHHHHHHhhcCCC-CccCCcCCCCCcHHHHHHHHHHHHHcCCccCCCCCCHHHHhhcccCCCChH
Q 008735 419 KLEDSTKPEIKRCNLSNVILQLKALGVD-DIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPI 497 (555)
Q Consensus 419 ~~~~~~~pei~~~~l~~~~l~l~~~~~~-~~~~~~~~~~p~~~~~~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~~~ 497 (555)
.++.++.|||++++|..++|+++++|+. ++..|+|++||+..++..|++.|..+||+|.+|.+|+ +|+.|+.+|++|+
T Consensus 391 ~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT~-lG~~ms~lpldpr 469 (845)
T COG1643 391 AFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLTP-LGKQMSLLPLDPR 469 (845)
T ss_pred hcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCCCH-HHHHHHhCCCChH
Confidence 9999999999999999999999999995 9999999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhhcCCC---cccCChhhHH
Q 008735 498 YSKALIVAGQFNCLEEMLITVAMLSVES---IFFRSPGEVR 535 (555)
Q Consensus 498 ~~~~l~~~~~~~~~~~~l~i~a~~~~~~---~~~~~~~~~~ 535 (555)
+|+|++.+..++|++++++|+|+||+++ .|..+.+.++
T Consensus 470 LA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~ 510 (845)
T COG1643 470 LARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRK 510 (845)
T ss_pred HHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhh
Confidence 9999999999999999999999999999 6888877666
No 6
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.2e-80 Score=690.07 Aligned_cols=465 Identities=43% Similarity=0.700 Sum_probs=421.7
Q ss_pred HhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCcc
Q 008735 36 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 115 (555)
Q Consensus 36 ~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~ 115 (555)
.....||++.+.+++++++.++++++|+|+|||||||++|+++++.+... ...|++++|+|.++..++.+++++++..+
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~-~~~I~~tQPRRlAA~svA~RvA~elg~~l 139 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGS-HGLIGHTQPRRLAARTVAQRIAEELGTPL 139 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCC-CceEecCCccHHHHHHHHHHHHHHhCCCc
Confidence 34567999999999999999999999999999999999999999876543 34799999999999999999999999999
Q ss_pred CCEEEEEEecCCCCCchhhHH---------HhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCC
Q 008735 116 GQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNG 186 (555)
Q Consensus 116 ~~~vg~~~~~~~~~~~~~~i~---------~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~ 186 (555)
|..|||.++++...+..+++. .+..++.++++++|||||+|||+.++|.+++++++++..|
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r---------- 209 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR---------- 209 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhC----------
Confidence 999999999988877666553 5556789999999999999999999999999999998877
Q ss_pred CCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCCccccceEEEcCCCCC---
Q 008735 187 NNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP--- 263 (555)
Q Consensus 187 ~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 263 (555)
++.|+|+||||++.+.|+++|++++++.++|+.+|++.+|......
T Consensus 210 -------------------------------pdLKlIlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~ 258 (1283)
T TIGR01967 210 -------------------------------PDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQED 258 (1283)
T ss_pred -------------------------------CCCeEEEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccc
Confidence 8899999999999999999999999999999999999998754321
Q ss_pred ---ChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCC
Q 008735 264 ---DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG 340 (555)
Q Consensus 264 ---~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g 340 (555)
++.+.....+..+.. ..+|++|||+|++.+++.+++.|.+.. ..++.+.++||+|+.++|.++++.+ +
T Consensus 259 ~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~------~~~~~VlpLhg~Ls~~eQ~~vf~~~--~ 329 (1283)
T TIGR01967 259 DDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILRKRN------LRHTEILPLYARLSNKEQQRVFQPH--S 329 (1283)
T ss_pred hhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcC------CCCcEEEeccCCCCHHHHHHHhCCC--C
Confidence 233444444444433 357899999999999999999998752 1257799999999999999998875 3
Q ss_pred CcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHhcc
Q 008735 341 FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKL 420 (555)
Q Consensus 341 ~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~ 420 (555)
.++||||||++|+|||||+|++|||+|+.+.+.||+.++++.+...|+|+++|.||+|||||.++|+||+||++++|+.+
T Consensus 330 ~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~ 409 (1283)
T TIGR01967 330 GRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSR 409 (1283)
T ss_pred CceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCchHHHHHHhhcCCCCccCCcCCCCCcHHHHHHHHHHHHHcCCccCCC---CCCHHHHhhcccCCCChH
Q 008735 421 EDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDC---KLSDPVGHQMARLPLDPI 497 (555)
Q Consensus 421 ~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~l~~~~---~~T~~lG~~~~~~~~~~~ 497 (555)
+++..|||++.+|..++|+++++|+.++..|+|++||+.+++..|++.|..+||||+++ ++|+ +|+.|+.+|++|+
T Consensus 410 ~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~-lGr~ma~LPldPr 488 (1283)
T TIGR01967 410 PEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLTP-IGRQLAQLPVDPR 488 (1283)
T ss_pred hhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCccccH-HHHHHhhcCCChH
Confidence 99999999999999999999999999999999999999999999999999999999988 7997 9999999999999
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCChhhHHHHHHHhhhccCCCCCCCCC
Q 008735 498 YSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRGKKCNEIFCKSRWRSPHF 554 (555)
Q Consensus 498 ~~~~l~~~~~~~~~~~~l~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (555)
+|+||+.+..++|++++++|+|+|+++++|..|.++++.++.++++|.+. .|||.
T Consensus 489 larmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~f~~~--~sD~l 543 (1283)
T TIGR01967 489 LARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAADQAHARFKDP--RSDFL 543 (1283)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHHhcCC--CCCHH
Confidence 99999999999999999999999999999999999999999999999765 36663
No 7
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.4e-80 Score=687.02 Aligned_cols=464 Identities=41% Similarity=0.661 Sum_probs=416.8
Q ss_pred hhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccC
Q 008735 37 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 116 (555)
Q Consensus 37 ~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~ 116 (555)
.+..||++.+.+++++++.++++++|+|+|||||||++|+++++.+... ...|++++|+|.++..++.+++++++..+|
T Consensus 69 ~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~-~g~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 69 YPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGV-KGLIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCC-CCceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 4567999999999999999999999999999999999999998865432 246899999999999999999999999899
Q ss_pred CEEEEEEecCCCCCchhhHH---------HhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCC
Q 008735 117 QRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 187 (555)
Q Consensus 117 ~~vg~~~~~~~~~~~~~~i~---------~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~ 187 (555)
..+||.++++...+..+.+. .+..++.++++++|||||||||..++|++++++++++..+
T Consensus 148 ~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r----------- 216 (1294)
T PRK11131 148 GCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR----------- 216 (1294)
T ss_pred ceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcC-----------
Confidence 99999999887665544433 4556788999999999999999999999999999988776
Q ss_pred CCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCCccccceEEEcCCCCC----
Q 008735 188 NNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP---- 263 (555)
Q Consensus 188 ~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 263 (555)
++.|+|+||||++.+.|+++|++++++.++++.+|++.+|......
T Consensus 217 ------------------------------pdlKvILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~ 266 (1294)
T PRK11131 217 ------------------------------PDLKVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDT 266 (1294)
T ss_pred ------------------------------CCceEEEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchh
Confidence 7899999999999999999999999999999999999998765432
Q ss_pred --ChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCC
Q 008735 264 --DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF 341 (555)
Q Consensus 264 --~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~ 341 (555)
+++...+..+..+. ...+|++|||||++.+++.+++.|.+.. .+...+.++||+|++++|..+++. .|.
T Consensus 267 ~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~~------~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~ 337 (1294)
T PRK11131 267 ERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADALNKLN------LRHTEILPLYARLSNSEQNRVFQS--HSG 337 (1294)
T ss_pred hHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhcC------CCcceEeecccCCCHHHHHHHhcc--cCC
Confidence 23333333333333 3457899999999999999999998741 124568999999999999999987 478
Q ss_pred cEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHhccc
Q 008735 342 RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLE 421 (555)
Q Consensus 342 ~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~ 421 (555)
++||||||++|+|||||+|++|||+|+.+.+.||+.+++..+...|+|+++|.||+|||||.++|.||+||++++|+.++
T Consensus 338 rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~ 417 (1294)
T PRK11131 338 RRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRP 417 (1294)
T ss_pred eeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCchHHHHHHhhcCCCCccCCcCCCCCcHHHHHHHHHHHHHcCCccCC-----CCCCHHHHhhcccCCCCh
Q 008735 422 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDD-----CKLSDPVGHQMARLPLDP 496 (555)
Q Consensus 422 ~~~~pei~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~l~~~-----~~~T~~lG~~~~~~~~~~ 496 (555)
++..|||++.+|..++|+++++|+.++..|+|++||+.+++..|++.|..+||||.+ +++|+ +|+.|+++|++|
T Consensus 418 ~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~-lG~~la~LPldP 496 (1294)
T PRK11131 418 EFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTP-LGRQLAQLPVDP 496 (1294)
T ss_pred cccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcH-HHHHHHhCCCCh
Confidence 999999999999999999999999999999999999999999999999999999854 57997 999999999999
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCChhhHHHHHHHhhhccCCCCCCCCC
Q 008735 497 IYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRGKKCNEIFCKSRWRSPHF 554 (555)
Q Consensus 497 ~~~~~l~~~~~~~~~~~~l~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (555)
++||+|+.+..++|++++++|+|+||+++||..|.++++.++.+|++|.+. .|||.
T Consensus 497 rlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~~f~~~--~sD~l 552 (1294)
T PRK11131 497 RLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKHRRFADK--ESDFL 552 (1294)
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHHhhCCC--CCCHH
Confidence 999999999999999999999999999999999999999999999999754 47774
No 8
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=2.8e-80 Score=660.45 Aligned_cols=482 Identities=39% Similarity=0.605 Sum_probs=436.2
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccC-CCcEEEEeCccHHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~-~~~~i~~~~P~r~l~~~~~~~ 106 (555)
++.+.+++..|..||++.+++++++++.++++++|+|.|||||||++|+++++..... ....|+|++|+|..|+.++++
T Consensus 159 s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeR 238 (924)
T KOG0920|consen 159 SESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAER 238 (924)
T ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHH
Confidence 5668889999999999999999999999999999999999999999999999976443 356899999999999999999
Q ss_pred HHHHhCCccCCEEEEEEecCCCCCchhhHH---------HhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhc
Q 008735 107 VAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 177 (555)
Q Consensus 107 ~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~---------~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~ 177 (555)
++.+.+...|..|||.++.+...+..+++. .+..++.+.++++||+||+|||+.++|.++.++|.++.+|
T Consensus 239 Va~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~- 317 (924)
T KOG0920|consen 239 VAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRN- 317 (924)
T ss_pred HHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhC-
Confidence 999999999999999999988776655443 5666899999999999999999999999999999999998
Q ss_pred ccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCCccccceEEE
Q 008735 178 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILY 257 (555)
Q Consensus 178 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 257 (555)
+++|+|+||||+|.+.|..||++++++.++|+.+|+..+|
T Consensus 318 ----------------------------------------p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~f 357 (924)
T KOG0920|consen 318 ----------------------------------------PDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYF 357 (924)
T ss_pred ----------------------------------------CCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHH
Confidence 9999999999999999999999999999999999998877
Q ss_pred cCCC-----------------CCC--------------hHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHh
Q 008735 258 TLYP-----------------EPD--------------YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERL 306 (555)
Q Consensus 258 ~~~~-----------------~~~--------------~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~ 306 (555)
++.. ... ..+.....+..++.....|.||||+|+..++..+...|....
T Consensus 358 LEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~ 437 (924)
T KOG0920|consen 358 LEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNL 437 (924)
T ss_pred HHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcc
Confidence 5430 011 112233344455556668999999999999999999997643
Q ss_pred hcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCcccccee
Q 008735 307 LQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVV 386 (555)
Q Consensus 307 ~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~ 386 (555)
.-.. ..++.+.++|+.|+.++|..|+...+.|.+|||+|||+||++|+||||.||||+|+.|.+.||+..++..+...
T Consensus 438 ~f~~--~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~ 515 (924)
T KOG0920|consen 438 PFAD--SLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLS 515 (924)
T ss_pred cccc--ccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhhee
Confidence 2211 24689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHhHHHHhcccCCCCCCEEEEccChhhHhcccC-CCCCcccccCchHHHHHHhhcCCCCccCC--cCCCCCcHHHHH
Q 008735 387 PISKAQALQRSGRAGREGPGKCFRLYPENEFDKLED-STKPEIKRCNLSNVILQLKALGVDDIIGF--DFMEKPSRASII 463 (555)
Q Consensus 387 p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~-~~~pei~~~~l~~~~l~l~~~~~~~~~~~--~~~~~p~~~~~~ 463 (555)
|+|++++.||+|||||..+|.||+||++..|+.+.. ++.|||+|.+|.++||++|.++...+..| ..++||+.+++.
T Consensus 516 wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~ 595 (924)
T KOG0920|consen 516 WVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVD 595 (924)
T ss_pred eccccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHH
Confidence 999999999999999999999999999999999777 99999999999999999999988777654 568999999999
Q ss_pred HHHHHHHHcCCccCCCCCCHHHHhhcccCCCChHHHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCChhhHHHHHHHhhh
Q 008735 464 KSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRGKKCNEI 543 (555)
Q Consensus 464 ~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~i~a~~~~~~~~~~~~~~~~~~~~~~~~ 543 (555)
.|+..|..+||++.++++|+ ||+.++.+|++|+.||++++|..|+|++|+++|+|+|++++||..|.++++.++++++.
T Consensus 596 ~a~~~L~~igaL~~~e~LT~-LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~ 674 (924)
T KOG0920|consen 596 LAIERLKQIGALDESEELTP-LGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKL 674 (924)
T ss_pred HHHHHHHHhccccCcccchH-HHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHH
Confidence 99999999999999999997 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCC
Q 008735 544 FCKSRWRSPHF 554 (555)
Q Consensus 544 ~~~~~~~~~~~ 554 (555)
|.... .|||.
T Consensus 675 ~~~~~-~SD~l 684 (924)
T KOG0920|consen 675 LALDS-ISDHL 684 (924)
T ss_pred hccCC-cchHH
Confidence 98665 57774
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-79 Score=625.06 Aligned_cols=470 Identities=44% Similarity=0.704 Sum_probs=433.0
Q ss_pred ChhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCC----CcEEEEeCccHHHHHH
Q 008735 27 SSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----GKLIGVTQPRRVAAVT 102 (555)
Q Consensus 27 ~~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~----~~~i~~~~P~r~l~~~ 102 (555)
..++-.++.+.|..||+....++++++|..+..+||||.|||||||++|+++++.++... ++.|.+++|+|.++..
T Consensus 241 ~V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaia 320 (1172)
T KOG0926|consen 241 IVSRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIA 320 (1172)
T ss_pred EecCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHH
Confidence 345667888999999999999999999999999999999999999999999999998765 6789999999999999
Q ss_pred HHHHHHHHhCCccCCEEEEEEecCCCCCchhhHH---------HhhcCCCCCCCceeEeecccccccchhHHHHHHHHHH
Q 008735 103 VAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 173 (555)
Q Consensus 103 ~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~---------~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~ 173 (555)
++++++.+++. .+..|||.+++++..+..+.++ ++..|..|..|+.||+||||||++++|.++++|.+++
T Consensus 321 mAkRVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV 399 (1172)
T KOG0926|consen 321 MAKRVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIV 399 (1172)
T ss_pred HHHHHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHH
Confidence 99999999997 8899999999999988887765 5666788999999999999999999999999999999
Q ss_pred HhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHH---hhhC-CCCeEEeCCc
Q 008735 174 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS---EYFG-CAKAVHVQGR 249 (555)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~---~~~~-~~~~~~~~~~ 249 (555)
..|+++.. .. + ...++++|+||||+...+|. ..|. .+|++.++.|
T Consensus 400 ~LR~k~~k-----------------e~-----------~---~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdAR 448 (1172)
T KOG0926|consen 400 PLRQKYYK-----------------EQ-----------C---QIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDAR 448 (1172)
T ss_pred HHHHHHhh-----------------hh-----------c---ccCceeEEEEeeeEEecccccCceecCCCCceeeeecc
Confidence 98854321 00 1 11578999999999888887 4454 3679999999
Q ss_pred cccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhc---------------------
Q 008735 250 QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQ--------------------- 308 (555)
Q Consensus 250 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~--------------------- 308 (555)
.|||.+++......+|+..+....+.+|...++|.||||+.+..++.++++.|++.++.
T Consensus 449 QfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~ 528 (1172)
T KOG0926|consen 449 QFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENP 528 (1172)
T ss_pred cCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccch
Confidence 99999999999999999999999999999999999999999999999999999998440
Q ss_pred ---------------------------------------------------------------------CCCCCCCeEEE
Q 008735 309 ---------------------------------------------------------------------LPEASRKLVTV 319 (555)
Q Consensus 309 ---------------------------------------------------------------------~~~~~~~~~v~ 319 (555)
-......+.|.
T Consensus 529 s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvL 608 (1172)
T KOG0926|consen 529 SDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVL 608 (1172)
T ss_pred hhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEe
Confidence 00013367899
Q ss_pred EecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcc
Q 008735 320 PIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 399 (555)
Q Consensus 320 ~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GR 399 (555)
++|+-++.++|.+||...+.|.+-+|||||+||++++||+|+||||+|..|.+.||..+|++++...|+|+++.-||+||
T Consensus 609 PLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGR 688 (1172)
T KOG0926|consen 609 PLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGR 688 (1172)
T ss_pred ehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEccChhhHh-cccCCCCCcccccCchHHHHHHhhcCCCCccCCcCCCCCcHHHHHHHHHHHHHcCCccCC
Q 008735 400 AGREGPGKCFRLYPENEFD-KLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDD 478 (555)
Q Consensus 400 aGR~~~G~~~~l~~~~~~~-~~~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~l~~~ 478 (555)
|||.|+|+||+||+...|+ .|+.+..|||++.+.++++|++|++++.++..|+|++||...+++.|...|..+||||.+
T Consensus 689 AGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~ 768 (1172)
T KOG0926|consen 689 AGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSN 768 (1172)
T ss_pred cCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999998 599999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhhcccCCCChHHHHHHHHhhhcCCHHHHHHHHHhhcCCCcccC
Q 008735 479 CKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFR 529 (555)
Q Consensus 479 ~~~T~~lG~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~i~a~~~~~~~~~~ 529 (555)
|.+|. ||+.|+.+|++|+.+|||+.+.+.+|+.-.+.++++||+.++|..
T Consensus 769 g~lT~-lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e~~i~ 818 (1172)
T KOG0926|consen 769 GGLTK-LGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYEVLIV 818 (1172)
T ss_pred CCccc-ccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccchhhh
Confidence 99998 999999999999999999999999999999999999999988854
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3e-77 Score=652.15 Aligned_cols=437 Identities=35% Similarity=0.528 Sum_probs=396.4
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEE
Q 008735 41 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 120 (555)
Q Consensus 41 l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg 120 (555)
||++++..++++++.++++++++|+|||||||++|+++++... .+.+|+|++|+|+++.++++++++.++..+|..+|
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 6999999999999999999999999999999999999998753 34589999999999999999999999999999999
Q ss_pred EEEecCCCCCchhhHH---------HhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHh-hcccccCCCCCCCCC
Q 008735 121 YSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA-RSKSADGHSNGNNNN 190 (555)
Q Consensus 121 ~~~~~~~~~~~~~~i~---------~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~-~~~~~~~~~~~~~~~ 190 (555)
|.++++...+..+++. .+..++.++++++|||||+|||..++|.++++++++... +
T Consensus 79 y~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr-------------- 144 (819)
T TIGR01970 79 YRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLR-------------- 144 (819)
T ss_pred EEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcC--------------
Confidence 9999877665444432 444578899999999999999999999999988877653 3
Q ss_pred CcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCCccccceEEEcCCCCCChHHHHH
Q 008735 191 ENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATL 270 (555)
Q Consensus 191 ~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 270 (555)
++.|+|+||||++.+.+.+||++++++.++++.+|++.+|......++....+
T Consensus 145 ---------------------------~dlqlIlmSATl~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v 197 (819)
T TIGR01970 145 ---------------------------EDLKILAMSATLDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAV 197 (819)
T ss_pred ---------------------------CCceEEEEeCCCCHHHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHH
Confidence 78899999999999999999999999999999999999998765555443333
Q ss_pred H-HHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecC
Q 008735 271 I-TIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN 349 (555)
Q Consensus 271 ~-~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~ 349 (555)
. .+.... ....|++|||||++++++.+++.|.+.+. .++.+.++||+|++++|.++++.|++|+++||||||
T Consensus 198 ~~~l~~~l-~~~~g~iLVFlpg~~eI~~l~~~L~~~~~------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn 270 (819)
T TIGR01970 198 SRAVEHAL-ASETGSILVFLPGQAEIRRVQEQLAERLD------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN 270 (819)
T ss_pred HHHHHHHH-HhcCCcEEEEECCHHHHHHHHHHHHhhcC------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc
Confidence 2 233333 33478999999999999999999987532 278899999999999999999999999999999999
Q ss_pred ccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHhcccCCCCCccc
Q 008735 350 IAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIK 429 (555)
Q Consensus 350 ~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~pei~ 429 (555)
++|+|||||+|++|||+|+.+...||+.+|++.+.+.|+|+++|.||+|||||.++|.||+||++++++.+.++..|||+
T Consensus 271 IAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~ 350 (819)
T TIGR01970 271 IAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEIL 350 (819)
T ss_pred hHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHhhcCCCCccCCcCCCCCcHHHHHHHHHHHHHcCCccCCCCCCHHHHhhcccCCCChHHHHHHHHhhhcC
Q 008735 430 RCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFN 509 (555)
Q Consensus 430 ~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~~~~~~~l~~~~~~~ 509 (555)
+.+|..++|+++.+|+.++..|+|++||+.+++..|++.|..+||||.++++|+ +|+.|+++|++|++|++|+.+..++
T Consensus 351 r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~lgald~~~~lT~-~G~~~~~lp~~p~l~~~ll~~~~~~ 429 (819)
T TIGR01970 351 QADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQRLGALDAQGRLTA-HGKAMAALGCHPRLAAMLLSAHSTG 429 (819)
T ss_pred ccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHHCCCCCCCCCcCH-HHHHHHhcCCCHHHHHHHHHhhhcC
Confidence 999999999999999998889999999999999999999999999999999998 9999999999999999999999999
Q ss_pred CHHHHHHHHHhhcCCCccc
Q 008735 510 CLEEMLITVAMLSVESIFF 528 (555)
Q Consensus 510 ~~~~~l~i~a~~~~~~~~~ 528 (555)
|.+++++|+|+|++++++.
T Consensus 430 ~~~~~~~iaa~ls~~~~~~ 448 (819)
T TIGR01970 430 LAALACDLAALLEERGLPR 448 (819)
T ss_pred CHHHHHHHHHHHcCCCCCC
Confidence 9999999999999998754
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9.8e-75 Score=634.09 Aligned_cols=436 Identities=35% Similarity=0.553 Sum_probs=392.1
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEE
Q 008735 40 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 119 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~v 119 (555)
.||++++..++++++.++++++++|||||||||++|+++++.... +.+|+|++|+|+++.++++++++.++..+|..+
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--CCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 599999999999999999999999999999999999999986543 347999999999999999999999999999999
Q ss_pred EEEEecCCCCCchhhHH---------HhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHh-hcccccCCCCCCCC
Q 008735 120 GYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA-RSKSADGHSNGNNN 189 (555)
Q Consensus 120 g~~~~~~~~~~~~~~i~---------~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~-~~~~~~~~~~~~~~ 189 (555)
||.++++...+..+++. .+..++.++++++|||||+|||+.++|.++++++++... +
T Consensus 81 Gy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr------------- 147 (812)
T PRK11664 81 GYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLR------------- 147 (812)
T ss_pred EEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCC-------------
Confidence 99999876555443332 344578899999999999999999999999998877653 3
Q ss_pred CCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCCccccceEEEcCCCCCChHHHH
Q 008735 190 NENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDAT 269 (555)
Q Consensus 190 ~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 269 (555)
++.|+|+||||++.+.+++||++++++.++++.++++.+|...+..+++...
T Consensus 148 ----------------------------~~lqlilmSATl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~ 199 (812)
T PRK11664 148 ----------------------------DDLKLLIMSATLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEA 199 (812)
T ss_pred ----------------------------ccceEEEEecCCCHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHH
Confidence 7889999999999999999999999999999999999999877666665544
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecC
Q 008735 270 LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN 349 (555)
Q Consensus 270 ~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~ 349 (555)
+...+........|++|||||++++++.+++.|.+... .++.+.++||+|+.++|.++++.|++|+++||||||
T Consensus 200 v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn 273 (812)
T PRK11664 200 VARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN 273 (812)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc
Confidence 33333333333478999999999999999999987432 268899999999999999999999999999999999
Q ss_pred ccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHhcccCCCCCccc
Q 008735 350 IAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIK 429 (555)
Q Consensus 350 ~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~pei~ 429 (555)
++|+|||||+|++|||+|+.+...||+.+|++.+.+.|+|+++|.||+|||||.++|.||+||++++++.+.++..|||+
T Consensus 274 IAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~ 353 (812)
T PRK11664 274 IAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEIL 353 (812)
T ss_pred hHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHhhcCCCCccCCcCCCCCcHHHHHHHHHHHHHcCCccCCCCCCHHHHhhcccCCCChHHHHHHHHhhhcC
Q 008735 430 RCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFN 509 (555)
Q Consensus 430 ~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~~~~~~~l~~~~~~~ 509 (555)
+.+|.+++|.++++|+.++..|+|++||+.+++..|++.|..+||+|++|++|+ +|+.|+.+|++|++|++|+.+..++
T Consensus 354 r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~lgald~~g~lT~-~G~~m~~lp~~Prla~~ll~a~~~~ 432 (812)
T PRK11664 354 HSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQLGALDGQGRLTA-RGRKMAALGNDPRLAAMLVAAKEDD 432 (812)
T ss_pred ccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCcCH-HHHHHHhcCCchHHHHHHHHHHhcC
Confidence 999999999999999988888999999999999999999999999999999997 9999999999999999999999988
Q ss_pred CHH--HHHHHHHhhcCCC
Q 008735 510 CLE--EMLITVAMLSVES 525 (555)
Q Consensus 510 ~~~--~~l~i~a~~~~~~ 525 (555)
|.. .+..++|+++.++
T Consensus 433 ~~~l~~a~~laall~e~~ 450 (812)
T PRK11664 433 EAALATAAKLAAILEEPP 450 (812)
T ss_pred chhhHHHHHHHHhhccCC
Confidence 764 6788889988764
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5.8e-55 Score=466.33 Aligned_cols=390 Identities=24% Similarity=0.322 Sum_probs=299.2
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcc-----c--------cCCCcEEEEeCccHHHHHHHHHHHHHHh
Q 008735 45 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG-----F--------CRDGKLIGVTQPRRVAAVTVAKRVAEES 111 (555)
Q Consensus 45 ~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~-----~--------~~~~~~i~~~~P~r~l~~~~~~~~~~~~ 111 (555)
.+|+++++.+.+|++++++|+||||||+++|+++++.. + ...+..+++++|+++++.++..++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999987631 1 1134589999999999999998887766
Q ss_pred CCccCCEEEEEEecCCCCCc--hhhH---H-----HhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhccccc
Q 008735 112 GVELGQRVGYSIRFDDRTST--STRI---K-----EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 181 (555)
Q Consensus 112 ~~~~~~~vg~~~~~~~~~~~--~~~i---~-----~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~ 181 (555)
+......+.+..++...... .+.. . ..+..+.++++++||||||||+...+|.+++++++....+
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~----- 321 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKI----- 321 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccchhHHHHHHHHhhhhc-----
Confidence 53211111122222222111 1110 0 1122356888999999999999999999999988654322
Q ss_pred CCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC--CHHHHHhhhCCCCeEEeCCcc-ccceEEEc
Q 008735 182 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAKAVHVQGRQ-FPVEILYT 258 (555)
Q Consensus 182 ~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~--~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~ 258 (555)
.|+++||||+ +.+.+.+||++++.+.++++. ++++.+|.
T Consensus 322 --------------------------------------rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi 363 (675)
T PHA02653 322 --------------------------------------RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYV 363 (675)
T ss_pred --------------------------------------CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEe
Confidence 3899999999 456788999999999999875 89998886
Q ss_pred CCCC-----CChHHHHHHHHHHHHh---cCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHH
Q 008735 259 LYPE-----PDYLDATLITIFQVHL---DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 330 (555)
Q Consensus 259 ~~~~-----~~~~~~~~~~~~~~~~---~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 330 (555)
.... .++.+.....+..... ...++++|||||++.+|+.+++.|.+.. +++.+.++||+|++.+
T Consensus 364 ~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~e- 435 (675)
T PHA02653 364 KNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNID- 435 (675)
T ss_pred ecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHH-
Confidence 5432 1222222122222222 2235789999999999999999998752 2588999999999853
Q ss_pred HhhcCcC-CCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEE
Q 008735 331 MRVFAPA-AAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCF 409 (555)
Q Consensus 331 ~~i~~~f-~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~ 409 (555)
+.++.| ++|+++||||||+||+|||||+|++|||+|+.+.+. +..++ ..|+|+++|.||+|||||.++|.||
T Consensus 436 -q~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~ 508 (675)
T PHA02653 436 -EILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYV 508 (675)
T ss_pred -HHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEE
Confidence 455555 689999999999999999999999999999877653 33333 3589999999999999999999999
Q ss_pred EccChhhHhcccCCCCCcccccC---chHHHHHHhhcCCCCccCCcCCCCCcHHHHHHHHHHHHHcCCccCCCCCCHHH-
Q 008735 410 RLYPENEFDKLEDSTKPEIKRCN---LSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPV- 485 (555)
Q Consensus 410 ~l~~~~~~~~~~~~~~pei~~~~---l~~~~l~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~l~~~~~~T~~l- 485 (555)
+||+++++. | +.+.+ |..++|+++++|++... +.|++||+.+++..|++.|..+|++|+ ++|. |
T Consensus 509 rLyt~~~~~-------p-I~ri~~~~L~~~vL~lk~~g~~~~~-~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~-l~ 576 (675)
T PHA02653 509 YFYDLDLLK-------P-IKRIDSEFLHNYILYAKYFNLTLPE-DLFVIPSNLDRLRKTEEYIDSFNISIE--KWYE-IL 576 (675)
T ss_pred EEECHHHhH-------H-HHHHhHHHHHHHHHHHHHcCCCCcc-cccCCCCCHHHHHHHHHHHHHcCCCch--hhhh-hh
Confidence 999998752 3 55555 89999999999995444 459999999999999999999998754 7998 9
Q ss_pred -HhhcccCCCChHHHHHHHHhhhc
Q 008735 486 -GHQMARLPLDPIYSKALIVAGQF 508 (555)
Q Consensus 486 -G~~~~~~~~~~~~~~~l~~~~~~ 508 (555)
|+.++-+ +.||.+++|...
T Consensus 577 ~~~~~~~~----~~~k~~~~g~~~ 596 (675)
T PHA02653 577 SNYYVNML----EYAKIYVKGGIL 596 (675)
T ss_pred ccccHHHH----HHhHHHhcccHh
Confidence 9999998 999999988643
No 13
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.8e-45 Score=403.53 Aligned_cols=436 Identities=22% Similarity=0.246 Sum_probs=302.4
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHH-HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~-i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
.+.+.+.+...++..++++|.++++. +.+|+++++++|||||||.++.++++.... ++.+++++.|+++++.|....
T Consensus 9 p~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~ 86 (737)
T PRK02362 9 PEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEE 86 (737)
T ss_pred CHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHH
Confidence 45667788888899999999999998 889999999999999999777666665532 356799999999999999998
Q ss_pred HHHHhCCccCCEEEEEEec-----------CCCCCchhhHHHhhcC--CCCCCCceeEeecccccccchhHHHHHHHHHH
Q 008735 107 VAEESGVELGQRVGYSIRF-----------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 173 (555)
Q Consensus 107 ~~~~~~~~~~~~vg~~~~~-----------~~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~ 173 (555)
+..... .+..++..... +..+.+..++..++.+ .++++++++|+||+|
T Consensus 87 ~~~~~~--~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H----------------- 147 (737)
T PRK02362 87 FERFEE--LGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH----------------- 147 (737)
T ss_pred HHHhhc--CCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc-----------------
Confidence 875421 23333322111 1112334444444442 467899999999998
Q ss_pred HhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhCCCCeEEeCCcccc
Q 008735 174 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFP 252 (555)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~ 252 (555)
++.+.++++.++.++.++.... ++.|+|+||||+ |.+++++|++.. .+....++.+
T Consensus 148 ---------------------~l~d~~rg~~le~il~rl~~~~-~~~qii~lSATl~n~~~la~wl~~~-~~~~~~rpv~ 204 (737)
T PRK02362 148 ---------------------LIDSANRGPTLEVTLAKLRRLN-PDLQVVALSATIGNADELADWLDAE-LVDSEWRPID 204 (737)
T ss_pred ---------------------ccCCCcchHHHHHHHHHHHhcC-CCCcEEEEcccCCCHHHHHHHhCCC-cccCCCCCCC
Confidence 4556666666666666664322 678999999999 889999999753 2222223333
Q ss_pred ceEEEcCC-----CC------CChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCC-----------
Q 008735 253 VEILYTLY-----PE------PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP----------- 310 (555)
Q Consensus 253 v~~~~~~~-----~~------~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~----------- 310 (555)
+....... .. ..........+.+... .++++||||+|+++|+.++..|.+......
T Consensus 205 l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 282 (737)
T PRK02362 205 LREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAEL 282 (737)
T ss_pred CeeeEecCCeeccccccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 32211100 00 0000222333333322 478899999999999999999876532100
Q ss_pred --------C--------CCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceee
Q 008735 311 --------E--------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLY 374 (555)
Q Consensus 311 --------~--------~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~y 374 (555)
. ......+..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ ....|
T Consensus 283 ~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~----~~~~y 358 (737)
T PRK02362 283 AEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIR----DYRRY 358 (737)
T ss_pred HHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEe----cceee
Confidence 0 001236899999999999999999999999999999999999999999999997 46678
Q ss_pred cCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEccChhh-----HhcccCCCCCcccc------cCchHHHHHH
Q 008735 375 DPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENE-----FDKLEDSTKPEIKR------CNLSNVILQL 440 (555)
Q Consensus 375 d~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~-----~~~~~~~~~pei~~------~~l~~~~l~l 440 (555)
|+..|. .|.+..+|.||+|||||.| .|.|+.+....+ |+.+... .|+-.. ..+...++..
T Consensus 359 d~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~-~~~~i~S~l~~~~~l~~~lla~ 432 (737)
T PRK02362 359 DGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWA-DPEDVRSKLATEPALRTHVLST 432 (737)
T ss_pred cCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhC-CCCceeecCCChhhHHHHHHHH
Confidence 865443 5899999999999999998 499999986531 2222211 222222 2466667777
Q ss_pred hhcCCC----CccCC---cCCCC------CcHHHHHHHHHHHHHcCCccCCC---CCCHHHHhhcccCCCChHHHHHHHH
Q 008735 441 KALGVD----DIIGF---DFMEK------PSRASIIKSLEQLFLLGALTDDC---KLSDPVGHQMARLPLDPIYSKALIV 504 (555)
Q Consensus 441 ~~~~~~----~~~~~---~~~~~------p~~~~~~~al~~L~~~g~l~~~~---~~T~~lG~~~~~~~~~~~~~~~l~~ 504 (555)
.+.|.- ++.++ .|+.. ...+.++.+++.|.+.|+|+.++ .+|+ +|++++.+|++|.++..+..
T Consensus 433 I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~-lG~~~s~~~l~~~t~~~~~~ 511 (737)
T PRK02362 433 IASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATE-LGHLVSRLYIDPLSAAEIID 511 (737)
T ss_pred HHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeECh-HHHHHHHhcCCHHHHHHHHH
Confidence 666632 11111 23221 23467899999999999998765 3887 99999999999999999988
Q ss_pred hhhcC---CHHHHHHHHHh
Q 008735 505 AGQFN---CLEEMLITVAM 520 (555)
Q Consensus 505 ~~~~~---~~~~~l~i~a~ 520 (555)
+.... ....+|.++|.
T Consensus 512 ~l~~~~~~~~~~~l~~i~~ 530 (737)
T PRK02362 512 GLEAAKKPTDLGLLHLVCS 530 (737)
T ss_pred HhhhcccCchHHHHHHhhc
Confidence 86543 23445555553
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.5e-44 Score=394.67 Aligned_cols=433 Identities=19% Similarity=0.207 Sum_probs=286.4
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRV 107 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~ 107 (555)
.+.+.+.+...+ +.++++|+++++.+.+|++++++||||||||.++.++++..... +.+++++.|+++++.+..+.+
T Consensus 9 ~~~~~~~~~~~~-~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--~~k~v~i~P~raLa~q~~~~~ 85 (674)
T PRK01172 9 DDEFLNLFTGND-FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVPLRSLAMEKYEEL 85 (674)
T ss_pred CHHHHHHHhhCC-CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--CCcEEEEechHHHHHHHHHHH
Confidence 445666666554 45899999999999999999999999999998887777665432 456888889999999999988
Q ss_pred HHHhCCccCCEEEEEEecCC-----------CCCchhhHHHhhc-C-CCCCCCceeEeecccccccchhHHHHHHHHHHH
Q 008735 108 AEESGVELGQRVGYSIRFDD-----------RTSTSTRIKEALL-D-PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 174 (555)
Q Consensus 108 ~~~~~~~~~~~vg~~~~~~~-----------~~~~~~~i~~~~~-~-~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~ 174 (555)
.+.. ..|..++....... .+.+..+...++. . ..+++++++|+||+|+
T Consensus 86 ~~l~--~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~----------------- 146 (674)
T PRK01172 86 SRLR--SLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHI----------------- 146 (674)
T ss_pred HHHh--hcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchh-----------------
Confidence 7643 23444544332111 1122223323322 2 2478899999999994
Q ss_pred hhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhCCCCeEEeCCccccc
Q 008735 175 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPV 253 (555)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~v 253 (555)
+.+..++..++.++.++.... ++.|+|+||||+ |.+++++|++.. .+....++.|+
T Consensus 147 ---------------------l~d~~rg~~le~ll~~~~~~~-~~~riI~lSATl~n~~~la~wl~~~-~~~~~~r~vpl 203 (674)
T PRK01172 147 ---------------------IGDEDRGPTLETVLSSARYVN-PDARILALSATVSNANELAQWLNAS-LIKSNFRPVPL 203 (674)
T ss_pred ---------------------ccCCCccHHHHHHHHHHHhcC-cCCcEEEEeCccCCHHHHHHHhCCC-ccCCCCCCCCe
Confidence 333444444444444332211 678999999999 889999999753 44444555555
Q ss_pred eEEEc--CCC----CCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCC---------------
Q 008735 254 EILYT--LYP----EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA--------------- 312 (555)
Q Consensus 254 ~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~--------------- 312 (555)
+.... ... ...........+... ...++++||||+++++++.++..|.+.+.....-
T Consensus 204 ~~~i~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~ 281 (674)
T PRK01172 204 KLGILYRKRLILDGYERSQVDINSLIKET--VNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLN 281 (674)
T ss_pred EEEEEecCeeeecccccccccHHHHHHHH--HhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHH
Confidence 43221 110 000000011111111 1247889999999999999999998764321100
Q ss_pred -CCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHH
Q 008735 313 -SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKA 391 (555)
Q Consensus 313 -~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~ 391 (555)
.....+..+||+|+.++|..+++.|++|.++|||||+++++|||+|+..+||+ ....|+.. ...|+|..
T Consensus 282 ~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~----~~~~~~~~------~~~~~s~~ 351 (674)
T PRK01172 282 EMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR----DITRYGNG------GIRYLSNM 351 (674)
T ss_pred HHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc----CceEeCCC------CceeCCHH
Confidence 01235888999999999999999999999999999999999999999988885 33444421 22579999
Q ss_pred hHHHHhcccCCCC---CCEEEEccC-hhhHh---cccCCCCCcccccC------chHHHHHHhhcCC----CCccCC---
Q 008735 392 QALQRSGRAGREG---PGKCFRLYP-ENEFD---KLEDSTKPEIKRCN------LSNVILQLKALGV----DDIIGF--- 451 (555)
Q Consensus 392 ~~~Qr~GRaGR~~---~G~~~~l~~-~~~~~---~~~~~~~pei~~~~------l~~~~l~l~~~~~----~~~~~~--- 451 (555)
+|.||+|||||.| .|.++.+.. .++++ ++.. ..|+..++. +...++...+.|. .++.+|
T Consensus 352 ~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~-~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~ 430 (674)
T PRK01172 352 EIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLS-GEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNE 430 (674)
T ss_pred HHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHc-CCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHh
Confidence 9999999999998 677776653 22222 3221 122222222 2223445555553 233322
Q ss_pred cCC--CCCc---HHHHHHHHHHHHHcCCccCCC--CCCHHHHhhcccCCCChHHHHHHHHhhhcC-CHHHHHHHHH
Q 008735 452 DFM--EKPS---RASIIKSLEQLFLLGALTDDC--KLSDPVGHQMARLPLDPIYSKALIVAGQFN-CLEEMLITVA 519 (555)
Q Consensus 452 ~~~--~~p~---~~~~~~al~~L~~~g~l~~~~--~~T~~lG~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l~i~a 519 (555)
.|+ ..++ .+.++++++.|.+.|+|+.++ .+|+ +|++++++|++|.+++.+..+..-. ....+|.+++
T Consensus 431 tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~-lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~ 505 (674)
T PRK01172 431 TLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATR-LGKLTSDLYIDPESALILKSAFDHDYDEDLALYYIS 505 (674)
T ss_pred hhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECH-HHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhh
Confidence 333 3222 567899999999999998654 5787 9999999999999999998887543 3334444443
No 15
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1.4e-45 Score=379.96 Aligned_cols=480 Identities=33% Similarity=0.513 Sum_probs=406.4
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCC---CcEEEEeCccHHHHHHHHHH
Q 008735 30 RRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD---GKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 30 ~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~---~~~i~~~~P~r~l~~~~~~~ 106 (555)
....++..+..+|+..+.+++++++..++.++|.+.||+||||++.+++++...++. -..+.+.+|++..++.++++
T Consensus 366 e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaer 445 (1282)
T KOG0921|consen 366 ALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAER 445 (1282)
T ss_pred chhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHH
Confidence 366678889999999999999999999999999999999999999999999876654 22578899999999999999
Q ss_pred HHHHhCCccCCEEEEEEecCCCCCchhhHH------Hh--hcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcc
Q 008735 107 VAEESGVELGQRVGYSIRFDDRTSTSTRIK------EA--LLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSK 178 (555)
Q Consensus 107 ~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~------~~--~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~ 178 (555)
++.+....++..+||..++++.++...... .+ .....+..++++|+||.|+|...+|+++.+++.+....
T Consensus 446 va~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~m~~ty-- 523 (1282)
T KOG0921|consen 446 VANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTY-- 523 (1282)
T ss_pred HHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHhhhccc--
Confidence 999999999999999999998887665433 11 11234678899999999999999999999999887655
Q ss_pred cccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCCccccceEEEc
Q 008735 179 SADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYT 258 (555)
Q Consensus 179 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 258 (555)
+++++++||||+|.+.|..||+..+.+.+.++.+|+..++.
T Consensus 524 ---------------------------------------~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~l 564 (1282)
T KOG0921|consen 524 ---------------------------------------RDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFL 564 (1282)
T ss_pred ---------------------------------------hhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHH
Confidence 78999999999999999999999998888888888765443
Q ss_pred CCC--------------------------C------------CChH----------------HHHHHHHHH-HHhcCCCC
Q 008735 259 LYP--------------------------E------------PDYL----------------DATLITIFQ-VHLDEAPG 283 (555)
Q Consensus 259 ~~~--------------------------~------------~~~~----------------~~~~~~~~~-~~~~~~~~ 283 (555)
... . +.+. ....+.++. +....-.|
T Consensus 565 ed~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~g 644 (1282)
T KOG0921|consen 565 EDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDG 644 (1282)
T ss_pred HHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCcc
Confidence 210 0 0000 011122222 22222368
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEE
Q 008735 284 DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYV 363 (555)
Q Consensus 284 ~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~V 363 (555)
-|+||++....+..+..++...- .......+.+++.|+.++..++.++++..+.|..++|++|++++..+++.++.+|
T Consensus 645 ailvflpgwa~i~~L~~~ll~~~--~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 645 AVLVFLPGWAEIMTLCNRLLEHQ--EFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ceeeecCchHHhhhhhhhhhhhh--hhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 89999999999999988887652 2223347789999999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHhcccCCCCCcccccCchHHHHHHhhc
Q 008735 364 IDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSNVILQLKAL 443 (555)
Q Consensus 364 Id~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~pei~~~~l~~~~l~l~~~ 443 (555)
||++..+.+.|-...++....+.|.|+-+..||.||+||..+|.|+++++...|+.+.....+|+.+.++.++.|..|.+
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll 802 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLL 802 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHH
Confidence 99999999999988888889999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCccCC--cCCCCCcHHHHHHHHHHHHHcCCccCCCCCCHHHHhhcccCCCChHHHHHHHHhhhcCCHHHHHHHHHhh
Q 008735 444 GVDDIIGF--DFMEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAML 521 (555)
Q Consensus 444 ~~~~~~~~--~~~~~p~~~~~~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~i~a~~ 521 (555)
.+..+..| .-+.||+..++..+-..|..++++|.++.+|+ +|+.++++|+.|..+++++.+..++|..-++..++..
T Consensus 803 ~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~-lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~ 881 (1282)
T KOG0921|consen 803 RLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTP-LGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAM 881 (1282)
T ss_pred HhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccc-hhhhhhhccCcccccceeeechhhccchhhhhhhccc
Confidence 66555544 45899999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred cCCCcccCChhhHHHHHHHhhhccCCCCCCCCC
Q 008735 522 SVESIFFRSPGEVRRGKKCNEIFCKSRWRSPHF 554 (555)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (555)
++..+|..-..+...-...++.|.++-| |+|.
T Consensus 882 s~~~~~~~~~~~~~rl~g~q~~~~g~kf-sdhv 913 (1282)
T KOG0921|consen 882 SFPTPFVPREKHHSRLSGTQRKFAGNKF-SDHV 913 (1282)
T ss_pred ccccccccccccccccccchhhcccccc-ccch
Confidence 9998887766444333334567777777 6663
No 16
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-43 Score=359.77 Aligned_cols=328 Identities=21% Similarity=0.290 Sum_probs=252.4
Q ss_pred CCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhccc-----cCCCcEEEEe
Q 008735 22 PFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF-----CRDGKLIGVT 93 (555)
Q Consensus 22 ~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~-----~~~~~~i~~~ 93 (555)
.|..++ ++....+++.+++-.|+++|.+.++.++.|++++.++.|||||| |++|.+...... ..++.+++++
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 344444 55677789999999999999999999999999999999999999 888888866541 1235689999
Q ss_pred CccHHHHHHHHHHHHHHhCCccCCEEEEEEe--------------cCCCCCchhhHHHhhcC--CCCCCCceeEeecccc
Q 008735 94 QPRRVAAVTVAKRVAEESGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 157 (555)
Q Consensus 94 ~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~--------------~~~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He 157 (555)
.|+|+||.|+.+...++.... ....-.... .+..+.++.++..++.. -.+++++|+|+|||
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEA-- 248 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEA-- 248 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccH--
Confidence 999999999998876655422 211111111 12223445555555553 34789999999999
Q ss_pred cccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCH--HHHH
Q 008735 158 RTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS 235 (555)
Q Consensus 158 ~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~--~~~~ 235 (555)
|+|++++|.++++.++.++.. ++.|.++.|||++. ..++
T Consensus 249 ------------------------------------DrMldmGFe~qI~~Il~~i~~---~~rQtlm~saTwp~~v~~lA 289 (519)
T KOG0331|consen 249 ------------------------------------DRMLDMGFEPQIRKILSQIPR---PDRQTLMFSATWPKEVRQLA 289 (519)
T ss_pred ------------------------------------HhhhccccHHHHHHHHHhcCC---CcccEEEEeeeccHHHHHHH
Confidence 799999999999999999954 55589999999965 4555
Q ss_pred -hhhCCCCeEEeCCcc-----ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcC
Q 008735 236 -EYFGCAKAVHVQGRQ-----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL 309 (555)
Q Consensus 236 -~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~ 309 (555)
+|+++...+.+.+.. ..+........ ..-....+..++.......++++||||+|++.|++++..++..
T Consensus 290 ~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~---- 364 (519)
T KOG0331|consen 290 EDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK---- 364 (519)
T ss_pred HHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc----
Confidence 666644444443321 11111111222 1122333444444444566889999999999999999999885
Q ss_pred CCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecC
Q 008735 310 PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 389 (555)
Q Consensus 310 ~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s 389 (555)
++.+..+||+.++.+|..+++.|++|+..||||||+|++|+|+|+|++||| || .|.+
T Consensus 365 -----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn--------yd----------fP~~ 421 (519)
T KOG0331|consen 365 -----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN--------YD----------FPNN 421 (519)
T ss_pred -----CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe--------CC----------CCCC
Confidence 689999999999999999999999999999999999999999999999999 99 7999
Q ss_pred HHhHHHHhcccCCCC-CCEEEEccChhhHhc
Q 008735 390 KAQALQRSGRAGREG-PGKCFRLYPENEFDK 419 (555)
Q Consensus 390 ~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~~ 419 (555)
.++|+||+||+||.| .|.+|.+|+..++..
T Consensus 422 vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 422 VEDYVHRIGRTGRAGKKGTAITFFTSDNAKL 452 (519)
T ss_pred HHHHHhhcCccccCCCCceEEEEEeHHHHHH
Confidence 999999999999988 999999999887753
No 17
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.2e-41 Score=374.05 Aligned_cols=436 Identities=16% Similarity=0.168 Sum_probs=293.7
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHH-HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~-i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
++.+.+.++.+++-.++++|.++++. +.+|+++++++|||||||.++..+++..... .+.+++++.|+++++.+..+.
T Consensus 9 ~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~~~~~l~l~P~~aLa~q~~~~ 87 (720)
T PRK00254 9 DERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-EGGKAVYLVPLKALAEEKYRE 87 (720)
T ss_pred CHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHHH
Confidence 56788889999999999999999986 8999999999999999997776666554332 355788999999999999988
Q ss_pred HHHHhCCccCCEEEEEEec-----------CCCCCchhhHHHhhc--CCCCCCCceeEeecccccccchhHHHHHHHHHH
Q 008735 107 VAEESGVELGQRVGYSIRF-----------DDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 173 (555)
Q Consensus 107 ~~~~~~~~~~~~vg~~~~~-----------~~~~~~~~~i~~~~~--~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~ 173 (555)
+..+. ..+..++..... +..+.+..++..++. ..+++++++||+||+|
T Consensus 88 ~~~~~--~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H----------------- 148 (720)
T PRK00254 88 FKDWE--KLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIH----------------- 148 (720)
T ss_pred HHHHh--hcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcC-----------------
Confidence 76532 233444422221 111223333333333 2467899999999998
Q ss_pred HhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhCCCCeEEeCCcccc
Q 008735 174 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFP 252 (555)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~ 252 (555)
.+.+.+++..++.++.++. .+.|+|+||||+ |++++++|++.. .+....++.+
T Consensus 149 ---------------------~l~~~~rg~~le~il~~l~----~~~qiI~lSATl~n~~~la~wl~~~-~~~~~~rpv~ 202 (720)
T PRK00254 149 ---------------------LIGSYDRGATLEMILTHML----GRAQILGLSATVGNAEELAEWLNAE-LVVSDWRPVK 202 (720)
T ss_pred ---------------------ccCCccchHHHHHHHHhcC----cCCcEEEEEccCCCHHHHHHHhCCc-cccCCCCCCc
Confidence 4555566666666766664 568999999999 899999999754 3333334444
Q ss_pred ceE--EEcC-----CCC-CChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCC-------------
Q 008735 253 VEI--LYTL-----YPE-PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE------------- 311 (555)
Q Consensus 253 v~~--~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~------------- 311 (555)
... .+.. ... ..+.......+.+... .++++||||+|++.|+.++..|.+.+.....
T Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (720)
T PRK00254 203 LRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADS 280 (720)
T ss_pred ceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 321 1111 000 1111222222223222 3678999999999999998887654321100
Q ss_pred -----C------CCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCc
Q 008735 312 -----A------SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 380 (555)
Q Consensus 312 -----~------~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~ 380 (555)
. .....+.+|||+|++++|..+++.|++|.++|||||+++++|||+|++++||. ....|+ ..++
T Consensus 281 ~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~----~~~~~~-~~~~ 355 (720)
T PRK00254 281 LEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIR----DTKRYS-NFGW 355 (720)
T ss_pred HhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEEC----CceEcC-CCCc
Confidence 0 01235899999999999999999999999999999999999999999999996 334454 1221
Q ss_pred cccceeecCHHhHHHHhcccCCCC---CCEEEEccChhh----HhcccCCCCCccc------ccCchHHHHHHhhcCC-C
Q 008735 381 ESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENE----FDKLEDSTKPEIK------RCNLSNVILQLKALGV-D 446 (555)
Q Consensus 381 ~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~----~~~~~~~~~pei~------~~~l~~~~l~l~~~~~-~ 446 (555)
.+.+..+|.||+|||||.| .|.++.+.+.++ ++.+.. ..|+-. ...+...++.....+. .
T Consensus 356 -----~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~-~~pe~l~s~l~~es~l~~~ll~~i~~~~~~ 429 (720)
T PRK00254 356 -----EDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIF-GKPEKLFSMLSNESAFRSQVLALITNFGVS 429 (720)
T ss_pred -----eeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHh-CCchhhhccCCchHHHHHHHHHHHHhCCCC
Confidence 3567789999999999987 699999986433 333321 112221 1234455555555442 2
Q ss_pred CccC--------CcCCCCCc----HHHHHHHHHHHHHcCCccCC--C--CCCHHHHhhcccCCCChHHHHHHHHhhh---
Q 008735 447 DIIG--------FDFMEKPS----RASIIKSLEQLFLLGALTDD--C--KLSDPVGHQMARLPLDPIYSKALIVAGQ--- 507 (555)
Q Consensus 447 ~~~~--------~~~~~~p~----~~~~~~al~~L~~~g~l~~~--~--~~T~~lG~~~~~~~~~~~~~~~l~~~~~--- 507 (555)
+..+ |-+...|. .+.+++++..|.+.|+|+.+ + ..|+ +|++++.++++|.+++.+..++.
T Consensus 430 ~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~-lG~~~s~~~i~~~t~~~~~~~l~~~~ 508 (720)
T PRK00254 430 NFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLP-LGIRTSQLYIDPLTAKKFKDAFPKIE 508 (720)
T ss_pred CHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeCh-HHHHHHHHhCCHHHHHHHHHHHHhhc
Confidence 1111 11111222 35678899999999999643 3 4686 99999999999999999987764
Q ss_pred -cCCHHHHHHHHHhhcC
Q 008735 508 -FNCLEEMLITVAMLSV 523 (555)
Q Consensus 508 -~~~~~~~l~i~a~~~~ 523 (555)
......++-+++..+.
T Consensus 509 ~~~~~~~~l~~~~~~~e 525 (720)
T PRK00254 509 KNPNPLGIFQLIASTPD 525 (720)
T ss_pred cCCCHHHHHHHhhCCcc
Confidence 2345556666654443
No 18
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1e-41 Score=337.93 Aligned_cols=467 Identities=18% Similarity=0.208 Sum_probs=322.6
Q ss_pred CCCCCCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHH-HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 17 KLHSKPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~-i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
..+.-|...+. .+.+.++++.+++-.+.|+|.-++++ +.+|++.+|+++|+||||.+. .++-......++++.+++.
T Consensus 190 ~~~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIg-ElAGi~~~l~~g~KmlfLv 268 (830)
T COG1202 190 EVERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIG-ELAGIPRLLSGGKKMLFLV 268 (830)
T ss_pred ccccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHH-HhhCcHHHHhCCCeEEEEe
Confidence 34455555555 66788899999999999999999887 789999999999999999443 3332222234467899999
Q ss_pred ccHHHHHHHHHHHHHHhC---CccCCEEEEEEec--------------CCCCCchhhHHHhhcC-CCCCCCceeEeeccc
Q 008735 95 PRRVAAVTVAKRVAEESG---VELGQRVGYSIRF--------------DDRTSTSTRIKEALLD-PYLSRYSAIIVDEAH 156 (555)
Q Consensus 95 P~r~l~~~~~~~~~~~~~---~~~~~~vg~~~~~--------------~~~~~~~~~i~~~~~~-~~l~~~~~iIiDE~H 156 (555)
|.-++|.|-+..+.+... ..+...||..--. +..+.+..-+..++.. ..+.+++.+||||+|
T Consensus 269 PLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiH 348 (830)
T COG1202 269 PLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIH 348 (830)
T ss_pred hhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeee
Confidence 999999999888766542 2222333311100 0011222333445443 678999999999999
Q ss_pred ccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHH
Q 008735 157 ERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFS 235 (555)
Q Consensus 157 e~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~ 235 (555)
...+..+|+++|-++.+. +.+. ++.|+|.+|||+ |+++++
T Consensus 349 --------------------------tL~deERG~RLdGLI~RL---------r~l~----~~AQ~i~LSATVgNp~elA 389 (830)
T COG1202 349 --------------------------TLEDEERGPRLDGLIGRL---------RYLF----PGAQFIYLSATVGNPEELA 389 (830)
T ss_pred --------------------------eccchhcccchhhHHHHH---------HHhC----CCCeEEEEEeecCChHHHH
Confidence 333444444444443331 1111 789999999999 999999
Q ss_pred hhhCCCCeEEeCCccccceEEEcCCCC-CChHHHHHHHHHH-----HHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcC
Q 008735 236 EYFGCAKAVHVQGRQFPVEILYTLYPE-PDYLDATLITIFQ-----VHLDEAPGDILVFLTGQEEIESVERLVQERLLQL 309 (555)
Q Consensus 236 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~ 309 (555)
+.++ ...+....++.|++.+...... .+..+. +..+.+ .....-.|++|||++||..|+++++.|...
T Consensus 390 ~~l~-a~lV~y~~RPVplErHlvf~~~e~eK~~i-i~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k---- 463 (830)
T COG1202 390 KKLG-AKLVLYDERPVPLERHLVFARNESEKWDI-IARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK---- 463 (830)
T ss_pred HHhC-CeeEeecCCCCChhHeeeeecCchHHHHH-HHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC----
Confidence 9996 4567778888888876654432 222222 222211 112223689999999999999999999876
Q ss_pred CCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecC
Q 008735 310 PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 389 (555)
Q Consensus 310 ~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s 389 (555)
++.+.+||+||+..+|+.++..|.++++.++|+|.+++.|||+|+-.+|+. .-.|...|.|
T Consensus 464 -----G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFE--------------sLaMG~~WLs 524 (830)
T COG1202 464 -----GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFE--------------SLAMGIEWLS 524 (830)
T ss_pred -----CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHH--------------HHHcccccCC
Confidence 899999999999999999999999999999999999999999998766654 1224457999
Q ss_pred HHhHHHHhcccCCCC---CCEEEEccCh-hhHhc-------------ccCCCCCccc---ccCchHHHHHHhhcCCCCcc
Q 008735 390 KAQALQRSGRAGREG---PGKCFRLYPE-NEFDK-------------LEDSTKPEIK---RCNLSNVILQLKALGVDDII 449 (555)
Q Consensus 390 ~~~~~Qr~GRaGR~~---~G~~~~l~~~-~~~~~-------------~~~~~~pei~---~~~l~~~~l~l~~~~~~~~~ 449 (555)
+.+|.||.|||||++ .|++|.+..+ ..|.. +.....|-+. ..+-.+-+|. ..|+.+..
T Consensus 525 ~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~ 602 (830)
T COG1202 525 VREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSL 602 (830)
T ss_pred HHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcH
Confidence 999999999999999 8999999732 22222 1111111111 1111222333 22221111
Q ss_pred C-CcCCCC-C--cHHHHHHHHHHHHHcCCccCCC---CCCHHHHhhcccCCCChHHHHHHHHhhhcCCHHHHHHHHHhhc
Q 008735 450 G-FDFMEK-P--SRASIIKSLEQLFLLGALTDDC---KLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLS 522 (555)
Q Consensus 450 ~-~~~~~~-p--~~~~~~~al~~L~~~g~l~~~~---~~T~~lG~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~i~a~~~ 522 (555)
. .+-+.+ + ..-....++..|+..|+|+.+| ++|+ .|++++...+.|..|-.|..++ ....+|.=+++.+..
T Consensus 603 ~~i~~v~~~~~g~~~~~~k~l~~Lee~g~i~~~G~~v~~T~-yGrava~~Fl~p~~a~~Ir~~v-~~~~~pl~i~~~l~p 680 (830)
T COG1202 603 SVIERVNSLMLGAAFDPKKALSKLEEYGMIKKKGNIVRPTP-YGRAVAMSFLGPSEAEFIREGV-LASMDPLRIAAELEP 680 (830)
T ss_pred HHHhhcChhhccccCCHHHHHHHHHhcCCeeccCCEeeecc-ccceeEEeecCchHHHHHHHhh-hccCChHhHhhcccc
Confidence 1 000000 0 0113467899999999999776 6897 9999999999999999998886 444455555555556
Q ss_pred CCCcccCChhhHHHHHHHhhhccCCCCCCC
Q 008735 523 VESIFFRSPGEVRRGKKCNEIFCKSRWRSP 552 (555)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (555)
+++..+.+.-++......|.++..+.|+|.
T Consensus 681 fE~ayls~~l~r~i~~~~~~~vpsr~f~~a 710 (830)
T COG1202 681 FENAYLSGFLKRAIESALRGRVPSRLFDSA 710 (830)
T ss_pred ccccccChHHHHHHHHHhcCCCchhhhhHH
Confidence 667777778888888888999988888743
No 19
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=323.99 Aligned_cols=325 Identities=20% Similarity=0.262 Sum_probs=247.0
Q ss_pred CCCCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCC-CcEEEEeCcc
Q 008735 19 HSKPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPR 96 (555)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~-~~~i~~~~P~ 96 (555)
+.+.|.++. .+.+.+..+..++..|+++|.++++.+..|++++..|.||||||-.+.+.++...+.++ ...++++.|+
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPt 138 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPT 138 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCc
Confidence 445666665 77888999999999999999999999999999999999999999444444444433333 4579999999
Q ss_pred HHHHHHHHHHHHHHhCCccCCEEEEEEecC--------------CCCCchhhHHHhhcC---CCCCCCceeEeecccccc
Q 008735 97 RVAAVTVAKRVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERT 159 (555)
Q Consensus 97 r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~~~~---~~l~~~~~iIiDE~He~~ 159 (555)
|+++.|+++.+.. ++...|..+....++. ..+.++.++...+.+ -.+.+++++|+|||
T Consensus 139 RELA~QI~e~fe~-Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA---- 213 (476)
T KOG0330|consen 139 RELAQQIAEQFEA-LGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA---- 213 (476)
T ss_pred HHHHHHHHHHHHH-hccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH----
Confidence 9999999987644 3333333332222211 112334444444442 23678899999999
Q ss_pred cchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC--CHHHHHhh
Q 008735 160 VHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEY 237 (555)
Q Consensus 160 ~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~--~~~~~~~~ 237 (555)
|.++|+.|.+.+..+++.++ ...|.+++|||+ ...++..-
T Consensus 214 ----------------------------------DrlLd~dF~~~ld~ILk~ip----~erqt~LfsATMt~kv~kL~ra 255 (476)
T KOG0330|consen 214 ----------------------------------DRLLDMDFEEELDYILKVIP----RERQTFLFSATMTKKVRKLQRA 255 (476)
T ss_pred ----------------------------------HhhhhhhhHHHHHHHHHhcC----ccceEEEEEeecchhhHHHHhh
Confidence 79999999999999999998 678999999999 44555532
Q ss_pred -hCCCCeEEeCCccc---cceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCC
Q 008735 238 -FGCAKAVHVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEAS 313 (555)
Q Consensus 238 -~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~ 313 (555)
+.++.-+.+..... .++..|+..+..+.... ++++.....++++||||++...++.++-.|+..
T Consensus 256 sl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~y----LV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l-------- 323 (476)
T KOG0330|consen 256 SLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTY----LVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL-------- 323 (476)
T ss_pred ccCCCeEEeccchhcchHHhhhheEeccccccchh----HHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc--------
Confidence 22333333333222 23344544443332222 233333445788999999999999999999987
Q ss_pred CCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhH
Q 008735 314 RKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQA 393 (555)
Q Consensus 314 ~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~ 393 (555)
++.+.++||+|+++.|.-.+++|++|.+.||||||++++|+|+|.|++||| || .|.+..+|
T Consensus 324 -g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN--------yD----------iP~~skDY 384 (476)
T KOG0330|consen 324 -GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN--------YD----------IPTHSKDY 384 (476)
T ss_pred -CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe--------cC----------CCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999 99 89999999
Q ss_pred HHHhcccCCCC-CCEEEEccChhhH
Q 008735 394 LQRSGRAGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 394 ~Qr~GRaGR~~-~G~~~~l~~~~~~ 417 (555)
+||+||+||.| +|+++.|.+.-+.
T Consensus 385 IHRvGRtaRaGrsG~~ItlVtqyDv 409 (476)
T KOG0330|consen 385 IHRVGRTARAGRSGKAITLVTQYDV 409 (476)
T ss_pred HHHcccccccCCCcceEEEEehhhh
Confidence 99999999999 9999999987433
No 20
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.7e-41 Score=352.41 Aligned_cols=323 Identities=20% Similarity=0.219 Sum_probs=238.0
Q ss_pred CCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccC-CCcEEEEeCccHHHH
Q 008735 23 FFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAA 100 (555)
Q Consensus 23 ~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~-~~~~i~~~~P~r~l~ 100 (555)
|..+. .+.+.+.+...++-.++++|+++++.+.+|++++++||||||||..+.+.++...... .+.+++++.|+++++
T Consensus 6 f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa 85 (460)
T PRK11776 6 FSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELA 85 (460)
T ss_pred hhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHH
Confidence 44443 5567778888999999999999999999999999999999999966555555443222 244789999999999
Q ss_pred HHHHHHHHHHhCCccCCEEEEEEec--------------CCCCCchhhHHHhhcC--CCCCCCceeEeecccccccchhH
Q 008735 101 VTVAKRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDV 164 (555)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ 164 (555)
.|+.+.+........+..+...... +..+.+..++..++.. ..+++++++|+||||
T Consensus 86 ~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-------- 157 (460)
T PRK11776 86 DQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-------- 157 (460)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH--------
Confidence 9999877665432112222211111 1112233344444432 347889999999998
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCH--HHHHhh-hCCC
Q 008735 165 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFSEY-FGCA 241 (555)
Q Consensus 165 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~--~~~~~~-~~~~ 241 (555)
.|++.++...+..++..+. ...|++++|||++. ..+... +.++
T Consensus 158 ------------------------------~~l~~g~~~~l~~i~~~~~----~~~q~ll~SAT~~~~~~~l~~~~~~~~ 203 (460)
T PRK11776 158 ------------------------------RMLDMGFQDAIDAIIRQAP----ARRQTLLFSATYPEGIAAISQRFQRDP 203 (460)
T ss_pred ------------------------------HHhCcCcHHHHHHHHHhCC----cccEEEEEEecCcHHHHHHHHHhcCCC
Confidence 4666666666666666665 56799999999954 344444 4444
Q ss_pred CeEEeCCcc--ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 008735 242 KAVHVQGRQ--FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 319 (555)
Q Consensus 242 ~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~ 319 (555)
..+.+.... ..++..+......+ ....+..+.....++++||||+++++++.+++.|.+. ++.+.
T Consensus 204 ~~i~~~~~~~~~~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------~~~v~ 270 (460)
T PRK11776 204 VEVKVESTHDLPAIEQRFYEVSPDE----RLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ---------GFSAL 270 (460)
T ss_pred EEEEECcCCCCCCeeEEEEEeCcHH----HHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC---------CCcEE
Confidence 444443322 22344443333322 2333444444455778999999999999999999876 78899
Q ss_pred EecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcc
Q 008735 320 PIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 399 (555)
Q Consensus 320 ~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GR 399 (555)
.+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||+ || .|.+..+|+||+||
T Consensus 271 ~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~--------~d----------~p~~~~~yiqR~GR 332 (460)
T PRK11776 271 ALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN--------YE----------LARDPEVHVHRIGR 332 (460)
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE--------ec----------CCCCHhHhhhhccc
Confidence 9999999999999999999999999999999999999999999999 77 68899999999999
Q ss_pred cCCCC-CCEEEEccChhhHh
Q 008735 400 AGREG-PGKCFRLYPENEFD 418 (555)
Q Consensus 400 aGR~~-~G~~~~l~~~~~~~ 418 (555)
|||.| .|.|+.|+++++..
T Consensus 333 tGR~g~~G~ai~l~~~~e~~ 352 (460)
T PRK11776 333 TGRAGSKGLALSLVAPEEMQ 352 (460)
T ss_pred ccCCCCcceEEEEEchhHHH
Confidence 99999 89999999887654
No 21
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-40 Score=348.15 Aligned_cols=328 Identities=17% Similarity=0.199 Sum_probs=232.9
Q ss_pred CCCCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccc--------cCCCcE
Q 008735 19 HSKPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--------CRDGKL 89 (555)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~--------~~~~~~ 89 (555)
....|..+. ++.+.+.+...++..++++|+++++.+.+|++++++||||||||..+...++.... ...+.+
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 334555554 66788888899999999999999999999999999999999999544333332111 112457
Q ss_pred EEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecC--------------CCCCchhhHHHhhcC--CCCCCCceeEee
Q 008735 90 IGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVD 153 (555)
Q Consensus 90 i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~~~~--~~l~~~~~iIiD 153 (555)
++++.|+++++.|+.+.+..... ..+..++...... ..+.+..++..++.. ..+++++++|+|
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~-~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViD 164 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQ-ATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLD 164 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhc-cCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEe
Confidence 99999999999999887655433 2233343332211 122333334333332 247889999999
Q ss_pred cccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH-
Q 008735 154 EAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR- 232 (555)
Q Consensus 154 E~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~- 232 (555)
||| .+++.++..++..++..+... ...+.+++|||++..
T Consensus 165 Ead--------------------------------------~l~~~~f~~~i~~i~~~~~~~--~~~~~~l~SAT~~~~~ 204 (423)
T PRK04837 165 EAD--------------------------------------RMFDLGFIKDIRWLFRRMPPA--NQRLNMLFSATLSYRV 204 (423)
T ss_pred cHH--------------------------------------HHhhcccHHHHHHHHHhCCCc--cceeEEEEeccCCHHH
Confidence 998 344445544544455444321 245678999999643
Q ss_pred -HHH-hhhCCCCeEEeCCccc---cceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhh
Q 008735 233 -GFS-EYFGCAKAVHVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLL 307 (555)
Q Consensus 233 -~~~-~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~ 307 (555)
.+. .++.++..+.+..... .+...+.... .......+..+......+++||||+++..|+.+++.|...
T Consensus 205 ~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~----~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~-- 278 (423)
T PRK04837 205 RELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPS----NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD-- 278 (423)
T ss_pred HHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCC----HHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC--
Confidence 332 4555554444432221 1221111111 1222333444444445778999999999999999999875
Q ss_pred cCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceee
Q 008735 308 QLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVP 387 (555)
Q Consensus 308 ~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p 387 (555)
++.+..+||+|++++|..+++.|++|+++|||||+++++|||+|+|++||+ || .|
T Consensus 279 -------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~--------~d----------~P 333 (423)
T PRK04837 279 -------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN--------YD----------LP 333 (423)
T ss_pred -------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE--------eC----------CC
Confidence 888999999999999999999999999999999999999999999999999 88 68
Q ss_pred cCHHhHHHHhcccCCCC-CCEEEEccChhhHh
Q 008735 388 ISKAQALQRSGRAGREG-PGKCFRLYPENEFD 418 (555)
Q Consensus 388 ~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 418 (555)
.+..+|+||+|||||.| .|.++.|+++++..
T Consensus 334 ~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~ 365 (423)
T PRK04837 334 DDCEDYVHRIGRTGRAGASGHSISLACEEYAL 365 (423)
T ss_pred CchhheEeccccccCCCCCeeEEEEeCHHHHH
Confidence 89999999999999999 99999999887543
No 22
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-40 Score=349.91 Aligned_cols=323 Identities=21% Similarity=0.294 Sum_probs=250.5
Q ss_pred CCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhccccCCCcE-EEEeCcc
Q 008735 21 KPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKL-IGVTQPR 96 (555)
Q Consensus 21 ~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~~~~~~~-i~~~~P~ 96 (555)
..|..+. ++.+.+.+.+.++..|+++|+++++.+..|+++++.|+|||||| +.+|.+-........... ++++.|+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 4566664 67888889999999999999999999999999999999999999 445544432211122222 8999999
Q ss_pred HHHHHHHHHHHHHHhCCccCCEEEEEEec--------------CCCCCchhhHHHhhcCC--CCCCCceeEeeccccccc
Q 008735 97 RVAAVTVAKRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTV 160 (555)
Q Consensus 97 r~l~~~~~~~~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~i~~~~~~~--~l~~~~~iIiDE~He~~~ 160 (555)
|+||.|+.+.+........+..+...... +..+.++.++..++... .++++.++|+|||
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA----- 183 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA----- 183 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH-----
Confidence 99999999887665543212222222221 12233444444454443 4788999999999
Q ss_pred chhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH--HHH-hh
Q 008735 161 HTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EY 237 (555)
Q Consensus 161 ~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--~~~-~~ 237 (555)
|+|++++|..+++.+++.+. .+.|++++|||++.. .++ .+
T Consensus 184 ---------------------------------DrmLd~Gf~~~i~~I~~~~p----~~~qtllfSAT~~~~i~~l~~~~ 226 (513)
T COG0513 184 ---------------------------------DRMLDMGFIDDIEKILKALP----PDRQTLLFSATMPDDIRELARRY 226 (513)
T ss_pred ---------------------------------hhhhcCCCHHHHHHHHHhCC----cccEEEEEecCCCHHHHHHHHHH
Confidence 79999999999999999998 588999999999653 232 55
Q ss_pred hCCCCeEEeCCc-----cccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCC
Q 008735 238 FGCAKAVHVQGR-----QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA 312 (555)
Q Consensus 238 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~ 312 (555)
+.++..+.+... ...+...+......+ .....+..+......+++||||+|+..++.++..|...
T Consensus 227 l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~------- 296 (513)
T COG0513 227 LNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR------- 296 (513)
T ss_pred ccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC-------
Confidence 665555555522 233444444443332 34555555665555668999999999999999999886
Q ss_pred CCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHh
Q 008735 313 SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQ 392 (555)
Q Consensus 313 ~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~ 392 (555)
++.+..+||+|++++|.++++.|++|..+||||||++++|||||+|.+||| || .|.+..+
T Consensus 297 --g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin--------yD----------~p~~~e~ 356 (513)
T COG0513 297 --GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN--------YD----------LPLDPED 356 (513)
T ss_pred --CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE--------cc----------CCCCHHH
Confidence 899999999999999999999999999999999999999999999999999 99 7899999
Q ss_pred HHHHhcccCCCC-CCEEEEccChh
Q 008735 393 ALQRSGRAGREG-PGKCFRLYPEN 415 (555)
Q Consensus 393 ~~Qr~GRaGR~~-~G~~~~l~~~~ 415 (555)
|+||+||+||.| .|.++.|++++
T Consensus 357 yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 357 YVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred heeccCccccCCCCCeEEEEeCcH
Confidence 999999999999 99999999864
No 23
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.5e-40 Score=350.95 Aligned_cols=319 Identities=19% Similarity=0.251 Sum_probs=228.2
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhcc--c--cCCCcEEEEeCccHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAG--F--CRDGKLIGVTQPRRVAAV 101 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~--~--~~~~~~i~~~~P~r~l~~ 101 (555)
.+.+.+.+...++-.|+++|.++++.+.+|++++++|||||||| +++|.+..... . ...+..++++.|+++|+.
T Consensus 138 ~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~ 217 (545)
T PTZ00110 138 PDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAE 217 (545)
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHH
Confidence 45677888889999999999999999999999999999999999 45555443221 1 123567999999999999
Q ss_pred HHHHHHHHHhCCccCCEEEEEEec--------------CCCCCchhhHHHhhcC--CCCCCCceeEeecccccccchhHH
Q 008735 102 TVAKRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVL 165 (555)
Q Consensus 102 ~~~~~~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~l 165 (555)
|+.+.+..+... .+..+...... +..+.++.++..++.. ..++++++|||||||
T Consensus 218 Qi~~~~~~~~~~-~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd--------- 287 (545)
T PTZ00110 218 QIREQCNKFGAS-SKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD--------- 287 (545)
T ss_pred HHHHHHHHHhcc-cCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH---------
Confidence 998877665431 12211111111 1122333444444432 347889999999998
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCH--HHHHhh-hCCCC
Q 008735 166 LGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFSEY-FGCAK 242 (555)
Q Consensus 166 l~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~--~~~~~~-~~~~~ 242 (555)
.|++.++...+..++..+. ++.|++++|||++. +.+++. +...+
T Consensus 288 -----------------------------~mld~gf~~~i~~il~~~~----~~~q~l~~SAT~p~~v~~l~~~l~~~~~ 334 (545)
T PTZ00110 288 -----------------------------RMLDMGFEPQIRKIVSQIR----PDRQTLMWSATWPKEVQSLARDLCKEEP 334 (545)
T ss_pred -----------------------------hhhhcchHHHHHHHHHhCC----CCCeEEEEEeCCCHHHHHHHHHHhccCC
Confidence 4666666666666666654 77899999999954 345543 33333
Q ss_pred e-EEeCCcc----ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeE
Q 008735 243 A-VHVQGRQ----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLV 317 (555)
Q Consensus 243 ~-~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~ 317 (555)
+ +.+.... ..+...+......+.... +..++..... ..+++||||++++.|+.+++.|... ++.
T Consensus 335 v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~-L~~ll~~~~~-~~~k~LIF~~t~~~a~~l~~~L~~~---------g~~ 403 (545)
T PTZ00110 335 VHVNVGSLDLTACHNIKQEVFVVEEHEKRGK-LKMLLQRIMR-DGDKILIFVETKKGADFLTKELRLD---------GWP 403 (545)
T ss_pred EEEEECCCccccCCCeeEEEEEEechhHHHH-HHHHHHHhcc-cCCeEEEEecChHHHHHHHHHHHHc---------CCc
Confidence 2 2222111 112222211111222222 2222222221 4678999999999999999999865 788
Q ss_pred EEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHh
Q 008735 318 TVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRS 397 (555)
Q Consensus 318 v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~ 397 (555)
+..+||++++++|.++++.|++|+.+|||||+++++|||+|+|++||+ || .|.+..+|+||+
T Consensus 404 ~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~--------~d----------~P~s~~~yvqRi 465 (545)
T PTZ00110 404 ALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN--------FD----------FPNQIEDYVHRI 465 (545)
T ss_pred EEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999 88 689999999999
Q ss_pred cccCCCC-CCEEEEccChhhHh
Q 008735 398 GRAGREG-PGKCFRLYPENEFD 418 (555)
Q Consensus 398 GRaGR~~-~G~~~~l~~~~~~~ 418 (555)
|||||.| .|.||.|+++++..
T Consensus 466 GRtGR~G~~G~ai~~~~~~~~~ 487 (545)
T PTZ00110 466 GRTGRAGAKGASYTFLTPDKYR 487 (545)
T ss_pred cccccCCCCceEEEEECcchHH
Confidence 9999999 99999999877553
No 24
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.3e-40 Score=350.03 Aligned_cols=323 Identities=18% Similarity=0.209 Sum_probs=233.8
Q ss_pred CCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccc--------cCCCcEEEEe
Q 008735 23 FFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--------CRDGKLIGVT 93 (555)
Q Consensus 23 ~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~--------~~~~~~i~~~ 93 (555)
|..+. ++.+.+.+...++..++++|+++++.+.+|+++++++|||||||..+.++++.... ...+.+++|+
T Consensus 11 f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl 90 (572)
T PRK04537 11 FSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALIL 90 (572)
T ss_pred hhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEE
Confidence 44433 56788889999999999999999999999999999999999999554444433211 1123589999
Q ss_pred CccHHHHHHHHHHHHHHhCCccCCEEEEEEec--------------CCCCCchhhHHHhhcC---CCCCCCceeEeeccc
Q 008735 94 QPRRVAAVTVAKRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD---PYLSRYSAIIVDEAH 156 (555)
Q Consensus 94 ~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~i~~~~~~---~~l~~~~~iIiDE~H 156 (555)
.|+++|+.|+.+.+..+.. ..+..++..... +..+.+..++..++.. ..+..+++|||||||
T Consensus 91 ~PTreLa~Qi~~~~~~l~~-~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh 169 (572)
T PRK04537 91 APTRELAIQIHKDAVKFGA-DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169 (572)
T ss_pred eCcHHHHHHHHHHHHHHhc-cCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH
Confidence 9999999999988765543 334444433221 1122333344333322 236778999999998
Q ss_pred ccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHH---
Q 008735 157 ERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG--- 233 (555)
Q Consensus 157 e~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~--- 233 (555)
.|++.++...+..++..+... .+.|+++||||++...
T Consensus 170 --------------------------------------~lld~gf~~~i~~il~~lp~~--~~~q~ll~SATl~~~v~~l 209 (572)
T PRK04537 170 --------------------------------------RMFDLGFIKDIRFLLRRMPER--GTRQTLLFSATLSHRVLEL 209 (572)
T ss_pred --------------------------------------HHhhcchHHHHHHHHHhcccc--cCceEEEEeCCccHHHHHH
Confidence 445555555555566555432 3679999999996532
Q ss_pred HHhhhCCCCeEEeCCcccc---ceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCC
Q 008735 234 FSEYFGCAKAVHVQGRQFP---VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP 310 (555)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~ 310 (555)
...++.....+.+...... +...+.... .......+..+.......++||||+|+..++.+++.|.+.
T Consensus 210 ~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~----~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~----- 280 (572)
T PRK04537 210 AYEHMNEPEKLVVETETITAARVRQRIYFPA----DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH----- 280 (572)
T ss_pred HHHHhcCCcEEEeccccccccceeEEEEecC----HHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc-----
Confidence 2355554434433322211 122222111 1223334444445555778999999999999999999875
Q ss_pred CCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCH
Q 008735 311 EASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISK 390 (555)
Q Consensus 311 ~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~ 390 (555)
++.+..+||+|+..+|.++++.|++|+++|||||+++++|||+|+|++||+ || .|.+.
T Consensus 281 ----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn--------yd----------~P~s~ 338 (572)
T PRK04537 281 ----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN--------YD----------LPFDA 338 (572)
T ss_pred ----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE--------cC----------CCCCH
Confidence 788999999999999999999999999999999999999999999999999 88 68999
Q ss_pred HhHHHHhcccCCCC-CCEEEEccChhhH
Q 008735 391 AQALQRSGRAGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 391 ~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 417 (555)
.+|+||+|||||.| .|.|+.|+.+.+.
T Consensus 339 ~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 339 EDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred HHHhhhhcccccCCCCceEEEEecHHHH
Confidence 99999999999999 8999999987644
No 25
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=8.3e-40 Score=343.89 Aligned_cols=317 Identities=19% Similarity=0.232 Sum_probs=227.0
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc-------CCCcEEEEeCccHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-------RDGKLIGVTQPRRVAA 100 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~-------~~~~~i~~~~P~r~l~ 100 (555)
++.+.+.+.+.++-.++++|+++++.+.+|+++++++|||||||..+.+.++..... ....+++++.|+++|+
T Consensus 9 ~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa 88 (456)
T PRK10590 9 SPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELA 88 (456)
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHH
Confidence 567888899999999999999999999999999999999999995444443332211 1124799999999999
Q ss_pred HHHHHHHHHHhCCccCCEEEEEEe--------------cCCCCCchhhHHHhhcC--CCCCCCceeEeecccccccchhH
Q 008735 101 VTVAKRVAEESGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDV 164 (555)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~vg~~~~--------------~~~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ 164 (555)
.|+.+.+..+... .+..+..... .+..+.+..++..+... ..++++++|||||||
T Consensus 89 ~Qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-------- 159 (456)
T PRK10590 89 AQIGENVRDYSKY-LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-------- 159 (456)
T ss_pred HHHHHHHHHHhcc-CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH--------
Confidence 9999887765432 1221111111 11112233333333322 247889999999998
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCH--HHHH-hhhCCC
Q 008735 165 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFGCA 241 (555)
Q Consensus 165 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~--~~~~-~~~~~~ 241 (555)
.+++.++...+..++..+. ...|++++|||++. ..+. .++.++
T Consensus 160 ------------------------------~ll~~~~~~~i~~il~~l~----~~~q~l~~SAT~~~~~~~l~~~~~~~~ 205 (456)
T PRK10590 160 ------------------------------RMLDMGFIHDIRRVLAKLP----AKRQNLLFSATFSDDIKALAEKLLHNP 205 (456)
T ss_pred ------------------------------HHhccccHHHHHHHHHhCC----ccCeEEEEeCCCcHHHHHHHHHHcCCC
Confidence 3455555555555555554 56789999999954 3454 444444
Q ss_pred CeEEeCCccc---cceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q 008735 242 KAVHVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVT 318 (555)
Q Consensus 242 ~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v 318 (555)
..+.+..... .+...+..... ......+..+.......++||||+++.+++.+++.|.+. ++.+
T Consensus 206 ~~i~~~~~~~~~~~i~~~~~~~~~----~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~~ 272 (456)
T PRK10590 206 LEIEVARRNTASEQVTQHVHFVDK----KRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD---------GIRS 272 (456)
T ss_pred eEEEEecccccccceeEEEEEcCH----HHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC---------CCCE
Confidence 4444432221 12222221111 111222333333344578999999999999999999875 7889
Q ss_pred EEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhc
Q 008735 319 VPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSG 398 (555)
Q Consensus 319 ~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~G 398 (555)
..+||+|++++|.++++.|++|+++|||||+++++|||+|+|++||+ || .|.+..+|+||+|
T Consensus 273 ~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~--------~~----------~P~~~~~yvqR~G 334 (456)
T PRK10590 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN--------YE----------LPNVPEDYVHRIG 334 (456)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE--------eC----------CCCCHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999 88 6899999999999
Q ss_pred ccCCCC-CCEEEEccChhhHh
Q 008735 399 RAGREG-PGKCFRLYPENEFD 418 (555)
Q Consensus 399 RaGR~~-~G~~~~l~~~~~~~ 418 (555)
||||.| .|.++.++..++..
T Consensus 335 RaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 335 RTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred ccccCCCCeeEEEEecHHHHH
Confidence 999999 89999999876643
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.5e-39 Score=339.52 Aligned_cols=319 Identities=17% Similarity=0.201 Sum_probs=230.3
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcc----c-cCCCcEEEEeCccHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG----F-CRDGKLIGVTQPRRVAAVT 102 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~----~-~~~~~~i~~~~P~r~l~~~ 102 (555)
.+.+.+.+...++..|+++|+++++.+.+|++++++||||||||..+.+.++... . ..+..+++++.|+++++.|
T Consensus 9 ~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q 88 (434)
T PRK11192 9 DESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQ 88 (434)
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHH
Confidence 5678888999999999999999999999999999999999999955433333221 1 1124589999999999999
Q ss_pred HHHHHHHHhCCccCCEEEEEEec--------------CCCCCchhhHHHhhcCC--CCCCCceeEeecccccccchhHHH
Q 008735 103 VAKRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLL 166 (555)
Q Consensus 103 ~~~~~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~i~~~~~~~--~l~~~~~iIiDE~He~~~~~d~ll 166 (555)
+.+.+..+.. ..+..++..... +..+.+..++...+... .+.++++||+||||
T Consensus 89 ~~~~~~~l~~-~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah---------- 157 (434)
T PRK11192 89 VADQARELAK-HTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD---------- 157 (434)
T ss_pred HHHHHHHHHc-cCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH----------
Confidence 9887665543 222333322211 11122333333333322 36789999999998
Q ss_pred HHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH---HHHhhhCCCCe
Q 008735 167 GLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKA 243 (555)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~---~~~~~~~~~~~ 243 (555)
.|++.++...+..+...+. ...|+++||||++.. .+.+++...++
T Consensus 158 ----------------------------~~l~~~~~~~~~~i~~~~~----~~~q~~~~SAT~~~~~~~~~~~~~~~~~~ 205 (434)
T PRK11192 158 ----------------------------RMLDMGFAQDIETIAAETR----WRKQTLLFSATLEGDAVQDFAERLLNDPV 205 (434)
T ss_pred ----------------------------HHhCCCcHHHHHHHHHhCc----cccEEEEEEeecCHHHHHHHHHHHccCCE
Confidence 4555566555555555444 456999999999643 45555543332
Q ss_pred -EEeCCccc---cceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 008735 244 -VHVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 319 (555)
Q Consensus 244 -~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~ 319 (555)
+.+..... .+...+.... ........+..+......+++||||+++++++.++..|.+. ++.+.
T Consensus 206 ~i~~~~~~~~~~~i~~~~~~~~---~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~ 273 (434)
T PRK11192 206 EVEAEPSRRERKKIHQWYYRAD---DLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA---------GINCC 273 (434)
T ss_pred EEEecCCcccccCceEEEEEeC---CHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC---------CCCEE
Confidence 22222111 1222222111 12233344444444445788999999999999999999875 78899
Q ss_pred EecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcc
Q 008735 320 PIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 399 (555)
Q Consensus 320 ~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GR 399 (555)
.+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ || .|.+...|+||+||
T Consensus 274 ~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~--------~d----------~p~s~~~yiqr~GR 335 (434)
T PRK11192 274 YLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN--------FD----------MPRSADTYLHRIGR 335 (434)
T ss_pred EecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE--------EC----------CCCCHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999 88 68999999999999
Q ss_pred cCCCC-CCEEEEccChhhHhc
Q 008735 400 AGREG-PGKCFRLYPENEFDK 419 (555)
Q Consensus 400 aGR~~-~G~~~~l~~~~~~~~ 419 (555)
|||.| .|.++.+++..++..
T Consensus 336 ~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 336 TGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred cccCCCCceEEEEecHHHHHH
Confidence 99998 899999998777643
No 27
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1e-39 Score=347.22 Aligned_cols=317 Identities=18% Similarity=0.226 Sum_probs=224.7
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhcc------ccCCCcEEEEeCccHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAG------FCRDGKLIGVTQPRRVA 99 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~------~~~~~~~i~~~~P~r~l 99 (555)
++.+.+.+...++..|+++|.++++.+.+|+++++++||||||| +++|.+..... ....+..++++.|+++|
T Consensus 129 ~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreL 208 (518)
T PLN00206 129 PPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTREL 208 (518)
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHH
Confidence 55677788888999999999999999999999999999999999 45555432111 11245689999999999
Q ss_pred HHHHHHHHHHHhCCccCCEEEEEEecC--------------CCCCchhhHHHhhcC--CCCCCCceeEeecccccccchh
Q 008735 100 AVTVAKRVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTD 163 (555)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d 163 (555)
+.|+.+.+..... ..+..+......+ ..+.++.++..++.. ..++++++||+||||
T Consensus 209 a~Qi~~~~~~l~~-~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad------- 280 (518)
T PLN00206 209 CVQVEDQAKVLGK-GLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD------- 280 (518)
T ss_pred HHHHHHHHHHHhC-CCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH-------
Confidence 9988777654432 2222221111111 112333344344432 347889999999998
Q ss_pred HHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCH--HHHHhhhCCC
Q 008735 164 VLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFSEYFGCA 241 (555)
Q Consensus 164 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~--~~~~~~~~~~ 241 (555)
.|++.++...+..++..+ ++.|++++|||++. +.+++++...
T Consensus 281 -------------------------------~ml~~gf~~~i~~i~~~l-----~~~q~l~~SATl~~~v~~l~~~~~~~ 324 (518)
T PLN00206 281 -------------------------------CMLERGFRDQVMQIFQAL-----SQPQVLLFSATVSPEVEKFASSLAKD 324 (518)
T ss_pred -------------------------------HHhhcchHHHHHHHHHhC-----CCCcEEEEEeeCCHHHHHHHHHhCCC
Confidence 455555555555555544 45799999999954 4566655443
Q ss_pred Ce-EEeCCcccc---ceEEEcCCCCCChHHHHHHHHHHHHhc--CCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCC
Q 008735 242 KA-VHVQGRQFP---VEILYTLYPEPDYLDATLITIFQVHLD--EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK 315 (555)
Q Consensus 242 ~~-~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~ 315 (555)
+. +.+.....+ +..........+.... +..+... ...+++||||+++..++.+++.|... .+
T Consensus 325 ~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~----l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~--------~g 392 (518)
T PLN00206 325 IILISIGNPNRPNKAVKQLAIWVETKQKKQK----LFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV--------TG 392 (518)
T ss_pred CEEEEeCCCCCCCcceeEEEEeccchhHHHH----HHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc--------cC
Confidence 33 333222111 2222222222222222 2222221 22467999999999999999988753 16
Q ss_pred eEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHH
Q 008735 316 LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQ 395 (555)
Q Consensus 316 ~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Q 395 (555)
+.+..+||+++.++|..+++.|++|+.+|||||+++++|||+|+|++||+ || .|.+..+|+|
T Consensus 393 ~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~--------~d----------~P~s~~~yih 454 (518)
T PLN00206 393 LKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII--------FD----------MPNTIKEYIH 454 (518)
T ss_pred cceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE--------eC----------CCCCHHHHHH
Confidence 78999999999999999999999999999999999999999999999999 88 6899999999
Q ss_pred HhcccCCCC-CCEEEEccChhhHh
Q 008735 396 RSGRAGREG-PGKCFRLYPENEFD 418 (555)
Q Consensus 396 r~GRaGR~~-~G~~~~l~~~~~~~ 418 (555)
|+|||||.| .|.++.+++.++..
T Consensus 455 RiGRaGR~g~~G~ai~f~~~~~~~ 478 (518)
T PLN00206 455 QIGRASRMGEKGTAIVFVNEEDRN 478 (518)
T ss_pred hccccccCCCCeEEEEEEchhHHH
Confidence 999999999 89999999877643
No 28
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.4e-39 Score=348.19 Aligned_cols=322 Identities=18% Similarity=0.205 Sum_probs=238.7
Q ss_pred CCCC-ChhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc-CCCcEEEEeCccHHHH
Q 008735 23 FFND-SSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAA 100 (555)
Q Consensus 23 ~~~~-~~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~-~~~~~i~~~~P~r~l~ 100 (555)
|..+ .++.+.+.+...++..++++|+++++.+.+|++++++||||||||..+.+.++..... ..+.+++++.|+++|+
T Consensus 8 f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa 87 (629)
T PRK11634 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELA 87 (629)
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHH
Confidence 4444 3667888899999999999999999999999999999999999996655555443222 2345799999999999
Q ss_pred HHHHHHHHHHhCCccCCEEEEEEec--------------CCCCCchhhHHHhhcC--CCCCCCceeEeecccccccchhH
Q 008735 101 VTVAKRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDV 164 (555)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ 164 (555)
.|+++.+..+.+...+..+...... +..+.++.++...+.. ..++++++||+||||
T Consensus 88 ~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd-------- 159 (629)
T PRK11634 88 VQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD-------- 159 (629)
T ss_pred HHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH--------
Confidence 9999887766543323333222111 1112333444333332 247889999999998
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH--HH-HhhhCCC
Q 008735 165 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GF-SEYFGCA 241 (555)
Q Consensus 165 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--~~-~~~~~~~ 241 (555)
.|+++++...+..++..+. ...|+++||||++.. .+ .+|+.++
T Consensus 160 ------------------------------~ml~~gf~~di~~Il~~lp----~~~q~llfSAT~p~~i~~i~~~~l~~~ 205 (629)
T PRK11634 160 ------------------------------EMLRMGFIEDVETIMAQIP----EGHQTALFSATMPEAIRRITRRFMKEP 205 (629)
T ss_pred ------------------------------HHhhcccHHHHHHHHHhCC----CCCeEEEEEccCChhHHHHHHHHcCCC
Confidence 4666666666666776665 567999999999543 33 3566665
Q ss_pred CeEEeCCccc---cceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q 008735 242 KAVHVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVT 318 (555)
Q Consensus 242 ~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v 318 (555)
..+.+..... .+...|......+. ...+..+.......++||||+|+..++.+++.|.+. ++.+
T Consensus 206 ~~i~i~~~~~~~~~i~q~~~~v~~~~k----~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~---------g~~~ 272 (629)
T PRK11634 206 QEVRIQSSVTTRPDISQSYWTVWGMRK----NEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN---------GYNS 272 (629)
T ss_pred eEEEccCccccCCceEEEEEEechhhH----HHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC---------CCCE
Confidence 5555543321 22223322222222 223333444445678999999999999999999875 7889
Q ss_pred EEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhc
Q 008735 319 VPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSG 398 (555)
Q Consensus 319 ~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~G 398 (555)
..+||+|++++|.++++.|++|+++|||||+++++|||+|+|++||+ || .|.+..+|+||+|
T Consensus 273 ~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~--------~d----------~P~~~e~yvqRiG 334 (629)
T PRK11634 273 AALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN--------YD----------IPMDSESYVHRIG 334 (629)
T ss_pred EEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999 88 6899999999999
Q ss_pred ccCCCC-CCEEEEccChhhH
Q 008735 399 RAGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 399 RaGR~~-~G~~~~l~~~~~~ 417 (555)
||||.| .|.++.+++..+.
T Consensus 335 RtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 335 RTGRAGRAGRALLFVENRER 354 (629)
T ss_pred cccCCCCcceEEEEechHHH
Confidence 999999 7999999977654
No 29
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.1e-39 Score=349.04 Aligned_cols=443 Identities=22% Similarity=0.283 Sum_probs=297.1
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHh-cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~-~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
.+.+.++++..+.-.+++.|++++.... +|+|++|++|||||||.++.++++.... +.+.+++++.|.++|+.+..+.
T Consensus 17 ~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~-~~~~k~vYivPlkALa~Ek~~~ 95 (766)
T COG1204 17 DDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLL-EGGGKVVYIVPLKALAEEKYEE 95 (766)
T ss_pred cHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHH-hcCCcEEEEeChHHHHHHHHHH
Confidence 4567777777777678888888887754 4699999999999999776666665543 2356899999999999999999
Q ss_pred HH--HHhCCccCCEEEEEE-------ecCCCCCchhhHHHhhcC--CCCCCCceeEeecccccccchhHHHHHHHHHHHh
Q 008735 107 VA--EESGVELGQRVGYSI-------RFDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 175 (555)
Q Consensus 107 ~~--~~~~~~~~~~vg~~~-------~~~~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~ 175 (555)
+. +.++..++...|-.. +.+..+++.++...+..+ .++..+++|||||+|
T Consensus 96 ~~~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH------------------- 156 (766)
T COG1204 96 FSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIH------------------- 156 (766)
T ss_pred hhhHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeee-------------------
Confidence 88 455655555444111 112234455555544442 357789999999999
Q ss_pred hcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhCCCCeEEeCCccccc-
Q 008735 176 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPV- 253 (555)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~v- 253 (555)
++.+..+|+.++.++.++.... ..+|++++|||+ |.+++++|++...+ ....++.+.
T Consensus 157 -------------------~l~d~~RG~~lE~iv~r~~~~~-~~~rivgLSATlpN~~evA~wL~a~~~-~~~~rp~~l~ 215 (766)
T COG1204 157 -------------------LLGDRTRGPVLESIVARMRRLN-ELIRIVGLSATLPNAEEVADWLNAKLV-ESDWRPVPLR 215 (766)
T ss_pred -------------------ecCCcccCceehhHHHHHHhhC-cceEEEEEeeecCCHHHHHHHhCCccc-ccCCCCcccc
Confidence 5666668999999988887654 458999999999 99999999987544 222222111
Q ss_pred -------eEEEcCCCCC----ChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcC-------------
Q 008735 254 -------EILYTLYPEP----DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL------------- 309 (555)
Q Consensus 254 -------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~------------- 309 (555)
.......... ...+.....+.... ..++++||||+||+.+...|+.+.+.+...
T Consensus 216 ~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a 293 (766)
T COG1204 216 RGVPYVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGA 293 (766)
T ss_pred cCCccceEEEEecCccccccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccc
Confidence 1111111111 11223333333333 347899999999999999999999643211
Q ss_pred ---CC------------CCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceee
Q 008735 310 ---PE------------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLY 374 (555)
Q Consensus 310 ---~~------------~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~y 374 (555)
.. +.....++.||+||+.++|..+++.|++|+++|||||+++++|||+|+-++||. ...+|
T Consensus 294 ~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk----~~~~y 369 (766)
T COG1204 294 SPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK----DTRRY 369 (766)
T ss_pred cccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEe----eeEEE
Confidence 00 011235788999999999999999999999999999999999999999999996 67788
Q ss_pred cCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEcc-Chh---hHhcccCCCCCccccc------CchHHHHHHh
Q 008735 375 DPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLY-PEN---EFDKLEDSTKPEIKRC------NLSNVILQLK 441 (555)
Q Consensus 375 d~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~-~~~---~~~~~~~~~~pei~~~------~l~~~~l~l~ 441 (555)
|+..|+ .++++.++.||.|||||+| -|..+.+. +.+ .+........|+...+ ++...++.+.
T Consensus 370 ~~~~g~-----~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~ 444 (766)
T COG1204 370 DPKGGI-----VDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVI 444 (766)
T ss_pred cCCCCe-----EECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEE
Confidence 874443 5799999999999999999 56666665 222 1122334444443211 1222222222
Q ss_pred hcCCC----CccCC---cCCC------CCcHHHHHHHHHHHHHcC-CccCCC---CCCHHHHhhcccCCCChHHHHHHHH
Q 008735 442 ALGVD----DIIGF---DFME------KPSRASIIKSLEQLFLLG-ALTDDC---KLSDPVGHQMARLPLDPIYSKALIV 504 (555)
Q Consensus 442 ~~~~~----~~~~~---~~~~------~p~~~~~~~al~~L~~~g-~l~~~~---~~T~~lG~~~~~~~~~~~~~~~l~~ 504 (555)
+.+.. ....| -+.. .-....+..++..|.+.+ .++... ..|. +|+.+++++++|.+++.+..
T Consensus 445 ~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate-~g~~~s~~yi~~~sa~~~~~ 523 (766)
T COG1204 445 SVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALHATE-LGKLVSRLYIDPESAKIFRD 523 (766)
T ss_pred eccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccchhH-HHHHhhhccCCHHHHHHHHH
Confidence 22210 00000 0011 124567888999999986 554432 5787 99999999999999999988
Q ss_pred hhhcCCHH-HHHHHHHhhcC
Q 008735 505 AGQFNCLE-EMLITVAMLSV 523 (555)
Q Consensus 505 ~~~~~~~~-~~l~i~a~~~~ 523 (555)
....--.+ ..+.+....+.
T Consensus 524 ~l~~~~~~~~~~~~l~~is~ 543 (766)
T COG1204 524 LLAELALEPTEIGLLYLISL 543 (766)
T ss_pred HHHHhccccchHHHhhhhhc
Confidence 76443331 33344443333
No 30
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1e-39 Score=320.90 Aligned_cols=320 Identities=19% Similarity=0.319 Sum_probs=243.0
Q ss_pred CChhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhccc--------cCCCcEEEEeCc
Q 008735 26 DSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF--------CRDGKLIGVTQP 95 (555)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~--------~~~~~~i~~~~P 95 (555)
++. .+.+++..-++..|+++|.++++...++++++.++.|||||| +++|+++..... ...|...+++.|
T Consensus 252 ~P~-e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilap 330 (673)
T KOG0333|consen 252 FPL-ELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAP 330 (673)
T ss_pred CCH-HHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeech
Confidence 344 355688999999999999999999999999999999999999 667776643321 224778999999
Q ss_pred cHHHHHHHHHHHHHHhCCccCCE----EEEEEe----------cCCCCCchhhHHHhhcCC--CCCCCceeEeecccccc
Q 008735 96 RRVAAVTVAKRVAEESGVELGQR----VGYSIR----------FDDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERT 159 (555)
Q Consensus 96 ~r~l~~~~~~~~~~~~~~~~~~~----vg~~~~----------~~~~~~~~~~i~~~~~~~--~l~~~~~iIiDE~He~~ 159 (555)
+|.+++|+...-.++ +..+|.. ||.... .+..+.++.++...+.+. .++++.++|+|||
T Consensus 331 tReLaqqIeeEt~kf-~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldea---- 405 (673)
T KOG0333|consen 331 TRELAQQIEEETNKF-GKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEA---- 405 (673)
T ss_pred HHHHHHHHHHHHHHh-cccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccch----
Confidence 999999998764333 2233322 221111 111223334444333322 3788999999999
Q ss_pred cchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCC---------C-----------
Q 008735 160 VHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFA---------P----------- 219 (555)
Q Consensus 160 ~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~---------~----------- 219 (555)
|.|+|++|.+++..+|.+++..+.. .
T Consensus 406 ----------------------------------drmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~ 451 (673)
T KOG0333|consen 406 ----------------------------------DRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKK 451 (673)
T ss_pred ----------------------------------hhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccc
Confidence 7999999999999999998543211 1
Q ss_pred -ceEEEeccCCCH--HHHH-hhhCCCCeEEeCC--cccc-ceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCH
Q 008735 220 -LKLIIMSASLDA--RGFS-EYFGCAKAVHVQG--RQFP-VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ 292 (555)
Q Consensus 220 -~~ii~~SAT~~~--~~~~-~~~~~~~~~~~~~--~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~ 292 (555)
.|.+++|||+++ +.++ .||..+.++.+.. ++.+ ++.........+. ...+..+.......++|||+|++
T Consensus 452 yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k----~kkL~eil~~~~~ppiIIFvN~k 527 (673)
T KOG0333|consen 452 YRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEK----RKKLIEILESNFDPPIIIFVNTK 527 (673)
T ss_pred eeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHH----HHHHHHHHHhCCCCCEEEEEech
Confidence 678999999954 5555 7787766666553 2222 2222222222222 33344444444567899999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccce
Q 008735 293 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR 372 (555)
Q Consensus 293 ~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~ 372 (555)
+.|+.+|+.|.+. ++.+..|||+-++++|..+++.|++|...|+||||++++|||||+|.+|||
T Consensus 528 k~~d~lAk~LeK~---------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin------- 591 (673)
T KOG0333|consen 528 KGADALAKILEKA---------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN------- 591 (673)
T ss_pred hhHHHHHHHHhhc---------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee-------
Confidence 9999999999986 899999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhh
Q 008735 373 LYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 416 (555)
Q Consensus 373 ~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 416 (555)
|| .+.|..+|.||+||+||+| .|.++.|+++++
T Consensus 592 -yd----------maksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 592 -YD----------MAKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred -cc----------hhhhHHHHHHHhccccccccCceeEEEeccch
Confidence 99 7899999999999999999 999999999887
No 31
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.3e-39 Score=335.21 Aligned_cols=319 Identities=15% Similarity=0.223 Sum_probs=223.2
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccc-cCCCcEEEEeCccHHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~-~~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
++...+.+...++..++++|.++++.+.+|++++++||||||||.++.++++.... ...+.+++++.|+++++.|+.+.
T Consensus 36 ~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 115 (401)
T PTZ00424 36 NEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKV 115 (401)
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHH
Confidence 45566777778888999999999999999999999999999999665555544322 22356799999999999998877
Q ss_pred HHHHhCCccCCEEEEEEec--------------CCCCCchhhHHHhhcC--CCCCCCceeEeecccccccchhHHHHHHH
Q 008735 107 VAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLK 170 (555)
Q Consensus 107 ~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ll~~l~ 170 (555)
+..... ..+..++..... +..+.+..++...+.. ..++++++||+||+|+..
T Consensus 116 ~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~----------- 183 (401)
T PTZ00424 116 VLALGD-YLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEML----------- 183 (401)
T ss_pred HHHHhh-hcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHH-----------
Confidence 655443 222222211111 1112223333333222 247889999999999422
Q ss_pred HHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHH--HH-hhhCCCCeEEeC
Q 008735 171 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG--FS-EYFGCAKAVHVQ 247 (555)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~--~~-~~~~~~~~~~~~ 247 (555)
+.++...+..+++++. ++.|++++|||++.+. +. .++.++..+.+.
T Consensus 184 ---------------------------~~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 232 (401)
T PTZ00424 184 ---------------------------SRGFKGQIYDVFKKLP----PDVQVALFSATMPNEILELTTKFMRDPKRILVK 232 (401)
T ss_pred ---------------------------hcchHHHHHHHHhhCC----CCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeC
Confidence 2222222222222222 6789999999996532 22 444443333333
Q ss_pred Ccc---ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCC
Q 008735 248 GRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 324 (555)
Q Consensus 248 ~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~ 324 (555)
... ..+...+.......+ ....+..+.......++||||+++++++.+++.|.+. ++.+..+||+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~---------~~~~~~~h~~ 300 (401)
T PTZ00424 233 KDELTLEGIRQFYVAVEKEEW---KFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER---------DFTVSCMHGD 300 (401)
T ss_pred CCCcccCCceEEEEecChHHH---HHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC---------CCcEEEEeCC
Confidence 322 122223332222222 2233334444444678999999999999999999875 7889999999
Q ss_pred CCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC
Q 008735 325 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 404 (555)
Q Consensus 325 l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~ 404 (555)
|+.++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 301 ~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~--------~~----------~p~s~~~y~qr~GRagR~g 362 (401)
T PTZ00424 301 MDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN--------YD----------LPASPENYIHRIGRSGRFG 362 (401)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE--------EC----------CCCCHHHEeecccccccCC
Confidence 99999999999999999999999999999999999999999 77 6889999999999999998
Q ss_pred -CCEEEEccChhhHhc
Q 008735 405 -PGKCFRLYPENEFDK 419 (555)
Q Consensus 405 -~G~~~~l~~~~~~~~ 419 (555)
.|.|+.++++++.+.
T Consensus 363 ~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 363 RKGVAINFVTPDDIEQ 378 (401)
T ss_pred CCceEEEEEcHHHHHH
Confidence 999999998887654
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.2e-38 Score=346.06 Aligned_cols=329 Identities=18% Similarity=0.138 Sum_probs=224.2
Q ss_pred CCCCCCChhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHH
Q 008735 21 KPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAA 100 (555)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~ 100 (555)
.|+....++.+.+.++..++..+|++|.++++.+.+|+++++++|||||||....+.++......++.+++++.|+++|+
T Consensus 15 ~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa 94 (742)
T TIGR03817 15 APWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALA 94 (742)
T ss_pred CCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHH
Confidence 34555557788899999999999999999999999999999999999999954444444433333456899999999999
Q ss_pred HHHHHHHHHHhCCccCCEEEEEEecCCCC--------------CchhhHHH-hhcC-----CCCCCCceeEeeccccccc
Q 008735 101 VTVAKRVAEESGVELGQRVGYSIRFDDRT--------------STSTRIKE-ALLD-----PYLSRYSAIIVDEAHERTV 160 (555)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~vg~~~~~~~~~--------------~~~~~i~~-~~~~-----~~l~~~~~iIiDE~He~~~ 160 (555)
.|+...+.... ..+..++.. ..+... +++..+.. ++.. ..++++++|||||+|....
T Consensus 95 ~q~~~~l~~l~--~~~i~v~~~-~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 95 ADQLRAVRELT--LRGVRPATY-DGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHhc--cCCeEEEEE-eCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 99999887664 112222211 111110 11111111 1110 1378899999999996321
Q ss_pred ----chhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHH
Q 008735 161 ----HTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFS 235 (555)
Q Consensus 161 ----~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~ 235 (555)
....++..++++.. ....+.|++++|||+ ++.++.
T Consensus 172 ~fg~~~~~il~rL~ri~~----------------------------------------~~g~~~q~i~~SATi~n~~~~~ 211 (742)
T TIGR03817 172 VFGSHVALVLRRLRRLCA----------------------------------------RYGASPVFVLASATTADPAAAA 211 (742)
T ss_pred ccHHHHHHHHHHHHHHHH----------------------------------------hcCCCCEEEEEecCCCCHHHHH
Confidence 11112222222211 111568999999999 666666
Q ss_pred hhhCCCCeEEeCCccccc--e-EEEcCCCC------------CChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHH
Q 008735 236 EYFGCAKAVHVQGRQFPV--E-ILYTLYPE------------PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVER 300 (555)
Q Consensus 236 ~~~~~~~~~~~~~~~~~v--~-~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~ 300 (555)
+++.+.++..+.....+. . ..+...+. ..........+..+.. .+.++||||+|++.++.++.
T Consensus 212 ~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~ 289 (742)
T TIGR03817 212 SRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAA 289 (742)
T ss_pred HHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHH
Confidence 555445554454322221 1 11111110 0111122223333332 25789999999999999999
Q ss_pred HHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCc
Q 008735 301 LVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 380 (555)
Q Consensus 301 ~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~ 380 (555)
.|.+.+..... ..+..+..|||++++++|.++++.|++|++++|||||++|+|||+|++++||+ ||
T Consensus 290 ~l~~~l~~~~~-~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~--------~~----- 355 (742)
T TIGR03817 290 IARRLLGEVDP-DLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI--------AG----- 355 (742)
T ss_pred HHHHHHHhhcc-ccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE--------eC-----
Confidence 98876433211 11456889999999999999999999999999999999999999999999999 66
Q ss_pred cccceeecCHHhHHHHhcccCCCC-CCEEEEccC
Q 008735 381 ESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 413 (555)
Q Consensus 381 ~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 413 (555)
.|.+..+|+||+|||||.| .|.++.+.+
T Consensus 356 -----~P~s~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 356 -----FPGTRASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred -----CCCCHHHHHHhccccCCCCCCcEEEEEeC
Confidence 6899999999999999999 899998885
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-38 Score=336.84 Aligned_cols=318 Identities=17% Similarity=0.241 Sum_probs=222.1
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccC--------CCcEEEEeCccHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR--------DGKLIGVTQPRRVA 99 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~--------~~~~i~~~~P~r~l 99 (555)
++.+.+.+...++-.++++|.++++.+.+|+++++++|||||||....+.++...... +..+++++.|+++|
T Consensus 95 ~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreL 174 (475)
T PRK01297 95 APELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTREL 174 (475)
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHH
Confidence 6678888888999999999999999999999999999999999944433333322111 14579999999999
Q ss_pred HHHHHHHHHHHhCCccCCEEEEEEec---------------CCCCCchhhHHHhhc--CCCCCCCceeEeecccccccch
Q 008735 100 AVTVAKRVAEESGVELGQRVGYSIRF---------------DDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHT 162 (555)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~vg~~~~~---------------~~~~~~~~~i~~~~~--~~~l~~~~~iIiDE~He~~~~~ 162 (555)
+.|+.+.+...... .+..+...... +..+.+..++..+.. ...++++++|||||+|.
T Consensus 175 a~Q~~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~----- 248 (475)
T PRK01297 175 VVQIAKDAAALTKY-TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADR----- 248 (475)
T ss_pred HHHHHHHHHHhhcc-CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHH-----
Confidence 99999887665432 22222211111 111223333333322 34578899999999994
Q ss_pred hHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCH--HHHH-hhhC
Q 008735 163 DVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFG 239 (555)
Q Consensus 163 d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~--~~~~-~~~~ 239 (555)
+++.++...+..++..+... .+.|++++|||++. ..+. .|+.
T Consensus 249 ---------------------------------l~~~~~~~~l~~i~~~~~~~--~~~q~i~~SAT~~~~~~~~~~~~~~ 293 (475)
T PRK01297 249 ---------------------------------MLDMGFIPQVRQIIRQTPRK--EERQTLLFSATFTDDVMNLAKQWTT 293 (475)
T ss_pred ---------------------------------HHhcccHHHHHHHHHhCCCC--CCceEEEEEeecCHHHHHHHHHhcc
Confidence 22222322333333333211 35699999999843 3444 4554
Q ss_pred CCCeEEeCCccc---cceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCe
Q 008735 240 CAKAVHVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 316 (555)
Q Consensus 240 ~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~ 316 (555)
+...+.+..... .+..++......+. ...+..+.......++||||+++++++.+++.|.+. ++
T Consensus 294 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~---------~~ 360 (475)
T PRK01297 294 DPAIVEIEPENVASDTVEQHVYAVAGSDK----YKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD---------GI 360 (475)
T ss_pred CCEEEEeccCcCCCCcccEEEEEecchhH----HHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc---------CC
Confidence 444444332221 12222222222221 222333333444578999999999999999999765 77
Q ss_pred EEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHH
Q 008735 317 VTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQR 396 (555)
Q Consensus 317 ~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr 396 (555)
.+..+||+++.++|.++++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||
T Consensus 361 ~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~--------~~----------~P~s~~~y~Qr 422 (475)
T PRK01297 361 NAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN--------FT----------LPEDPDDYVHR 422 (475)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE--------eC----------CCCCHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999 76 68999999999
Q ss_pred hcccCCCC-CCEEEEccChhhH
Q 008735 397 SGRAGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 397 ~GRaGR~~-~G~~~~l~~~~~~ 417 (555)
+|||||.| .|.++.++++++.
T Consensus 423 ~GRaGR~g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 423 IGRTGRAGASGVSISFAGEDDA 444 (475)
T ss_pred hCccCCCCCCceEEEEecHHHH
Confidence 99999999 8999999987643
No 34
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-38 Score=291.11 Aligned_cols=320 Identities=14% Similarity=0.256 Sum_probs=240.2
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHh-ccccCCCcEEEEeCccHHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH-AGFCRDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~-~~~~~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
++.+....-..++-.|..+|+.++..|.+|++++.++..|+|||..+..-++. .....+..+++++.|+|+++.|+.+.
T Consensus 35 ~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~v 114 (400)
T KOG0328|consen 35 KEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKV 114 (400)
T ss_pred hHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHH
Confidence 55566667778999999999999999999999999999999999333222222 12222346899999999999998887
Q ss_pred HHHHhC---CccCCEEEEEE----------ecCCCCCchhhHHHhhcCCC--CCCCceeEeecccccccchhHHHHHHHH
Q 008735 107 VAEESG---VELGQRVGYSI----------RFDDRTSTSTRIKEALLDPY--LSRYSAIIVDEAHERTVHTDVLLGLLKK 171 (555)
Q Consensus 107 ~~~~~~---~~~~~~vg~~~----------~~~~~~~~~~~i~~~~~~~~--l~~~~~iIiDE~He~~~~~d~ll~~l~~ 171 (555)
+...-+ .++...+|... ..+....++.++..+..... -..+.++|+||+
T Consensus 115 i~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEa---------------- 178 (400)
T KOG0328|consen 115 ILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEA---------------- 178 (400)
T ss_pred HHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccH----------------
Confidence 654322 22211222111 00111233444444444333 467899999999
Q ss_pred HHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHH---hhhCCCCeEEeCC
Q 008735 172 VQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS---EYFGCAKAVHVQG 248 (555)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~---~~~~~~~~~~~~~ 248 (555)
|.|++.++..++-.+.+.++ ++.|++++|||++.+.+. .|..++--+.+.-
T Consensus 179 ----------------------DemL~kgfk~Qiydiyr~lp----~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkr 232 (400)
T KOG0328|consen 179 ----------------------DEMLNKGFKEQIYDIYRYLP----PGAQVVLVSATLPHEILEMTEKFMTDPVRILVKR 232 (400)
T ss_pred ----------------------HHHHHhhHHHHHHHHHHhCC----CCceEEEEeccCcHHHHHHHHHhcCCceeEEEec
Confidence 67899999999999999998 899999999999776543 4444443333332
Q ss_pred cccc---ceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCC
Q 008735 249 RQFP---VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 325 (555)
Q Consensus 249 ~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 325 (555)
...+ ++.+|......+. ..+.+.+++....-.+.+|||||+..+..+.+.+++. .+.+..+||+|
T Consensus 233 deltlEgIKqf~v~ve~Eew---KfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~---------nftVssmHGDm 300 (400)
T KOG0328|consen 233 DELTLEGIKQFFVAVEKEEW---KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDM 300 (400)
T ss_pred CCCchhhhhhheeeechhhh---hHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh---------CceeeeccCCc
Confidence 2222 3444544433332 3444555555555678999999999999999999886 89999999999
Q ss_pred CHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-
Q 008735 326 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG- 404 (555)
Q Consensus 326 ~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~- 404 (555)
+++||.++++.|+.|+.+||++||+-++|+|+|.|+.||| || .|.....|+||+||.||.|
T Consensus 301 ~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN--------YD----------LP~nre~YIHRIGRSGRFGR 362 (400)
T KOG0328|consen 301 EQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN--------YD----------LPNNRELYIHRIGRSGRFGR 362 (400)
T ss_pred chhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe--------cC----------CCccHHHHhhhhccccccCC
Confidence 9999999999999999999999999999999999999999 99 6888999999999999999
Q ss_pred CCEEEEccChhhHhc
Q 008735 405 PGKCFRLYPENEFDK 419 (555)
Q Consensus 405 ~G~~~~l~~~~~~~~ 419 (555)
.|.++-+...++...
T Consensus 363 kGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 363 KGVAINFVKSDDLRI 377 (400)
T ss_pred cceEEEEecHHHHHH
Confidence 999999998887654
No 35
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.8e-37 Score=321.89 Aligned_cols=301 Identities=18% Similarity=0.240 Sum_probs=206.2
Q ss_pred hhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhh--HHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCc
Q 008735 37 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTT--QLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE 114 (555)
Q Consensus 37 ~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~--~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~ 114 (555)
..++-.++++|+++++.+.+|+++++++|||||||. ++|.+. . +..++++.|+++|+.++...+.. .+..
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~--~-----~~~~lVi~P~~~L~~dq~~~l~~-~gi~ 77 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC--S-----DGITLVISPLISLMEDQVLQLKA-SGIP 77 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH--c-----CCcEEEEecHHHHHHHHHHHHHH-cCCc
Confidence 346667899999999999999999999999999994 555443 2 34678899999999988887653 2222
Q ss_pred cCCEEEEEEecCCC------------------CCchhhHH---HhhcCC-CCCCCceeEeecccccccchhHHHHHHHHH
Q 008735 115 LGQRVGYSIRFDDR------------------TSTSTRIK---EALLDP-YLSRYSAIIVDEAHERTVHTDVLLGLLKKV 172 (555)
Q Consensus 115 ~~~~vg~~~~~~~~------------------~~~~~~i~---~~~~~~-~l~~~~~iIiDE~He~~~~~d~ll~~l~~~ 172 (555)
..+....... ..++..+. .+...- ...++++|||||||+...+...+...++++
T Consensus 78 ----~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l 153 (470)
T TIGR00614 78 ----ATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKAL 153 (470)
T ss_pred ----EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHH
Confidence 1111110000 00111110 011111 357899999999997654433333322222
Q ss_pred HHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH---HHHhhhCCC-CeEEeCC
Q 008735 173 QNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCA-KAVHVQG 248 (555)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~---~~~~~~~~~-~~~~~~~ 248 (555)
...+. ..++.+++++|||++.. ++.++++-. +.+....
T Consensus 154 ~~l~~--------------------------------------~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s 195 (470)
T TIGR00614 154 GSLKQ--------------------------------------KFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS 195 (470)
T ss_pred HHHHH--------------------------------------HcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC
Confidence 11110 01678999999999664 444555422 2222221
Q ss_pred ccccceEEEcCCCCC-ChHHHHHHHHHHHHh-cCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCC
Q 008735 249 RQFPVEILYTLYPEP-DYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLP 326 (555)
Q Consensus 249 ~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 326 (555)
....+..+...... +.... +..... ...+..+||||+|+++++.+++.|.+. ++.+..+||+|+
T Consensus 196 -~~r~nl~~~v~~~~~~~~~~----l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~---------g~~~~~~H~~l~ 261 (470)
T TIGR00614 196 -FDRPNLYYEVRRKTPKILED----LLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNL---------GIAAGAYHAGLE 261 (470)
T ss_pred -CCCCCcEEEEEeCCccHHHH----HHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhc---------CCCeeEeeCCCC
Confidence 11112222221221 22222 222222 233456799999999999999999876 888999999999
Q ss_pred HHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-C
Q 008735 327 SEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-P 405 (555)
Q Consensus 327 ~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~ 405 (555)
+++|.++++.|++|+++|||||+++++|||+|+|++||+ || .|.|..+|+||+|||||.| +
T Consensus 262 ~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~--------~~----------~P~s~~~y~Qr~GRaGR~G~~ 323 (470)
T TIGR00614 262 ISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH--------YS----------LPKSMESYYQESGRAGRDGLP 323 (470)
T ss_pred HHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE--------eC----------CCCCHHHHHhhhcCcCCCCCC
Confidence 999999999999999999999999999999999999999 77 6899999999999999999 9
Q ss_pred CEEEEccChhhHhc
Q 008735 406 GKCFRLYPENEFDK 419 (555)
Q Consensus 406 G~~~~l~~~~~~~~ 419 (555)
|.|+.+|+..+...
T Consensus 324 ~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 324 SECHLFYAPADINR 337 (470)
T ss_pred ceEEEEechhHHHH
Confidence 99999999887654
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.1e-36 Score=331.77 Aligned_cols=311 Identities=16% Similarity=0.172 Sum_probs=210.6
Q ss_pred hHHHHHHHh-hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhccccCCCcEEEEeCccHHHHHHHHH
Q 008735 29 SRRQKILQQ-RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAK 105 (555)
Q Consensus 29 ~~~~~~~~~-~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~ 105 (555)
..+...++. -+.-.++++|+++|+++..|+++++++|||+||| +++|.++. +..++++.|+++|+.++..
T Consensus 446 ~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-------~GiTLVISPLiSLmqDQV~ 518 (1195)
T PLN03137 446 KKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-------PGITLVISPLVSLIQDQIM 518 (1195)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-------CCcEEEEeCHHHHHHHHHH
Confidence 344444443 3567889999999999999999999999999999 55655432 2468999999999986655
Q ss_pred HHHHHhCCccCCEEEEEEecC--------------------CCCCchhhHH------HhhcC-CCCCCCceeEeeccccc
Q 008735 106 RVAEESGVELGQRVGYSIRFD--------------------DRTSTSTRIK------EALLD-PYLSRYSAIIVDEAHER 158 (555)
Q Consensus 106 ~~~~~~~~~~~~~vg~~~~~~--------------------~~~~~~~~i~------~~~~~-~~l~~~~~iIiDE~He~ 158 (555)
.+.. .+ ....+..... ....++.++. ..+.. .....+++|||||||+.
T Consensus 519 ~L~~-~G----I~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcV 593 (1195)
T PLN03137 519 NLLQ-AN----IPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCV 593 (1195)
T ss_pred HHHh-CC----CeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhh
Confidence 5432 12 1111111100 0001111111 11111 11244789999999986
Q ss_pred ccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH---HHH
Q 008735 159 TVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFS 235 (555)
Q Consensus 159 ~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~---~~~ 235 (555)
..+...+..-++.+-..+ . ..++.+++++|||++.. ++.
T Consensus 594 SqWGhDFRpdYr~L~~Lr----------------------------------~----~fp~vPilALTATAT~~V~eDI~ 635 (1195)
T PLN03137 594 SQWGHDFRPDYQGLGILK----------------------------------Q----KFPNIPVLALTATATASVKEDVV 635 (1195)
T ss_pred hhcccchHHHHHHHHHHH----------------------------------H----hCCCCCeEEEEecCCHHHHHHHH
Confidence 554433322222211111 0 01677899999999553 455
Q ss_pred hhhCCCCeEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHh-cCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCC
Q 008735 236 EYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASR 314 (555)
Q Consensus 236 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~ 314 (555)
+.++......+.......+..|...+.... ....+..... ...+...||||.++++|+.++..|.+.
T Consensus 636 ~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk---~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~--------- 703 (1195)
T PLN03137 636 QALGLVNCVVFRQSFNRPNLWYSVVPKTKK---CLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF--------- 703 (1195)
T ss_pred HHcCCCCcEEeecccCccceEEEEeccchh---HHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC---------
Confidence 666543333333322223344433332221 1122222222 223567899999999999999999876
Q ss_pred CeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHH
Q 008735 315 KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQAL 394 (555)
Q Consensus 315 ~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~ 394 (555)
++.+..|||+|++++|..+++.|..|+++|||||+++++|||+|+|++||+ || .|.+..+|+
T Consensus 704 Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH--------yd----------lPkSiEsYy 765 (1195)
T PLN03137 704 GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH--------HS----------LPKSIEGYH 765 (1195)
T ss_pred CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE--------cC----------CCCCHHHHH
Confidence 889999999999999999999999999999999999999999999999999 77 699999999
Q ss_pred HHhcccCCCC-CCEEEEccChhhHhc
Q 008735 395 QRSGRAGREG-PGKCFRLYPENEFDK 419 (555)
Q Consensus 395 Qr~GRaGR~~-~G~~~~l~~~~~~~~ 419 (555)
||+|||||.| +|.|+.+|+..++..
T Consensus 766 QriGRAGRDG~~g~cILlys~~D~~~ 791 (1195)
T PLN03137 766 QECGRAGRDGQRSSCVLYYSYSDYIR 791 (1195)
T ss_pred hhhcccCCCCCCceEEEEecHHHHHH
Confidence 9999999999 999999998877744
No 37
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-37 Score=299.97 Aligned_cols=342 Identities=19% Similarity=0.235 Sum_probs=251.4
Q ss_pred CCCCCCCChhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHh--c-cccCCC-cEEEEe
Q 008735 20 SKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFH--A-GFCRDG-KLIGVT 93 (555)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~--~-~~~~~~-~~i~~~ 93 (555)
+..+...+++.+.+.++..++-..+++|...++.+.+++++++.++|||||| +++|.+-.. . ....++ ...+++
T Consensus 6 ~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalII 85 (567)
T KOG0345|consen 6 FSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALII 85 (567)
T ss_pred hhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEe
Confidence 4444444678899999999999999999999999999999999999999999 555554322 1 111122 368899
Q ss_pred CccHHHHHHHHHHHHHHhCC----ccCCEEEEEEec-----------CCCCCchhhHHHhhcCC----CCCCCceeEeec
Q 008735 94 QPRRVAAVTVAKRVAEESGV----ELGQRVGYSIRF-----------DDRTSTSTRIKEALLDP----YLSRYSAIIVDE 154 (555)
Q Consensus 94 ~P~r~l~~~~~~~~~~~~~~----~~~~~vg~~~~~-----------~~~~~~~~~i~~~~~~~----~l~~~~~iIiDE 154 (555)
.|+|+++.|+...+..+... .....+|...-. ...+.++.++..++..+ .+..++++|+||
T Consensus 86 sPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDE 165 (567)
T KOG0345|consen 86 SPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDE 165 (567)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecc
Confidence 99999999998775544332 222334421100 11223445555555542 255899999999
Q ss_pred ccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCC--HH
Q 008735 155 AHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--AR 232 (555)
Q Consensus 155 ~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~--~~ 232 (555)
| |+++|++|..++..+++.++ ...+.=++|||.+ .+
T Consensus 166 A--------------------------------------DrLldmgFe~~~n~ILs~LP----KQRRTGLFSATq~~~v~ 203 (567)
T KOG0345|consen 166 A--------------------------------------DRLLDMGFEASVNTILSFLP----KQRRTGLFSATQTQEVE 203 (567)
T ss_pred h--------------------------------------HhHhcccHHHHHHHHHHhcc----cccccccccchhhHHHH
Confidence 9 79999999999999999998 4457788999994 34
Q ss_pred HHHhh-hCCCCeEEeCCcc-----ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHh
Q 008735 233 GFSEY-FGCAKAVHVQGRQ-----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERL 306 (555)
Q Consensus 233 ~~~~~-~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~ 306 (555)
++... +.|+.-+.+.... ..+..+|........ ...++++..+...+++|||.+|...++.....+....
T Consensus 204 dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK----~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l 279 (567)
T KOG0345|consen 204 DLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK----LSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL 279 (567)
T ss_pred HHHHhhccCceeeeecccccccCchhhcceeeEecHHHH----HHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHh
Confidence 55543 4454444443322 235566665544433 3344555555567889999999999999988887763
Q ss_pred hcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCcccccee
Q 008735 307 LQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVV 386 (555)
Q Consensus 307 ~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~ 386 (555)
.+..++.+||.|.+..|..+++.|.+..-.+++|||++++|+|||+|++||+ || .
T Consensus 280 -------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ--------~D----------p 334 (567)
T KOG0345|consen 280 -------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ--------FD----------P 334 (567)
T ss_pred -------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe--------cC----------C
Confidence 2778999999999999999999999988899999999999999999999999 99 5
Q ss_pred ecCHHhHHHHhcccCCCC-CCEEEEccC--hhhHhc-ccCCCCCcccccC
Q 008735 387 PISKAQALQRSGRAGREG-PGKCFRLYP--ENEFDK-LEDSTKPEIKRCN 432 (555)
Q Consensus 387 p~s~~~~~Qr~GRaGR~~-~G~~~~l~~--~~~~~~-~~~~~~pei~~~~ 432 (555)
|.+.++|+||+||+||.| .|.++.|.. ++.|-. +.....|++.+..
T Consensus 335 P~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~ 384 (567)
T KOG0345|consen 335 PKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERID 384 (567)
T ss_pred CCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhc
Confidence 899999999999999999 888777764 444444 3334456655443
No 38
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-37 Score=288.15 Aligned_cols=330 Identities=20% Similarity=0.307 Sum_probs=246.2
Q ss_pred CCCCCCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCC-CcEEEEeC
Q 008735 17 KLHSKPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQ 94 (555)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~-~~~i~~~~ 94 (555)
..+.++|..+. ++-+.+-++..+...++++|+.++++|..|++++-+|.||||||+.+.+.+++.....+ +.-.+++.
T Consensus 3 ~~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 3 RKTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT 82 (442)
T ss_pred ccccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEec
Confidence 34578888887 55677788899999999999999999999999999999999999888888887765554 66789999
Q ss_pred ccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCC--------------CCchhhHHHhhcC------CCCCCCceeEeec
Q 008735 95 PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDR--------------TSTSTRIKEALLD------PYLSRYSAIIVDE 154 (555)
Q Consensus 95 P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~--------------~~~~~~i~~~~~~------~~l~~~~~iIiDE 154 (555)
|+|+++.|+++.+.. .+...+..+.....+... +.++.++...+.. ..++++.++|+||
T Consensus 83 PTrELA~QiaEQF~a-lGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 83 PTRELALQIAEQFIA-LGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred chHHHHHHHHHHHHH-hcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 999999999998754 333333333222222111 1222222222221 1267889999999
Q ss_pred ccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHH
Q 008735 155 AHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGF 234 (555)
Q Consensus 155 ~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~ 234 (555)
| |.+++..|...++-+.+-++ ...|.+++|||++.. +
T Consensus 162 A--------------------------------------DrvL~~~f~d~L~~i~e~lP----~~RQtLlfSATitd~-i 198 (442)
T KOG0340|consen 162 A--------------------------------------DRVLAGCFPDILEGIEECLP----KPRQTLLFSATITDT-I 198 (442)
T ss_pred h--------------------------------------hhhhccchhhHHhhhhccCC----CccceEEEEeehhhH-H
Confidence 9 68888888888777777776 456999999999432 2
Q ss_pred HhhhCCCC------eEEeCCccccce---EEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHH
Q 008735 235 SEYFGCAK------AVHVQGRQFPVE---ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQER 305 (555)
Q Consensus 235 ~~~~~~~~------~~~~~~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~ 305 (555)
...++.+. ..........++ ..|...+. +..+..+..++....+++.+.++||+++..+|+.++..|+..
T Consensus 199 ~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~-~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l 277 (442)
T KOG0340|consen 199 KQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSI-DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL 277 (442)
T ss_pred HHhhcCCcccccceEEeccCCCCchhhhhhheeecch-hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh
Confidence 23333211 111111111111 12222221 222333444555555556889999999999999999999887
Q ss_pred hhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccce
Q 008735 306 LLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLV 385 (555)
Q Consensus 306 ~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~ 385 (555)
++.+..+||.|++.+|...+.+|+.+..+||||||++++|+|||.|..||| ||
T Consensus 278 ---------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN--------~d---------- 330 (442)
T KOG0340|consen 278 ---------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN--------HD---------- 330 (442)
T ss_pred ---------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe--------cC----------
Confidence 999999999999999999999999999999999999999999999999999 98
Q ss_pred eecCHHhHHHHhcccCCCC-CCEEEEccChhhHh
Q 008735 386 VPISKAQALQRSGRAGREG-PGKCFRLYPENEFD 418 (555)
Q Consensus 386 ~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 418 (555)
.|.++.+|+||+||+.|.| .|.++.++++.+.+
T Consensus 331 iPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 331 IPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVE 364 (442)
T ss_pred CCCCHHHHHHhhcchhcccCCcceEEEechhhHH
Confidence 7999999999999999999 89999999876654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.9e-36 Score=325.06 Aligned_cols=302 Identities=18% Similarity=0.277 Sum_probs=208.4
Q ss_pred HHHHHh-hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhh--HHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHH
Q 008735 32 QKILQQ-RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTT--QLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA 108 (555)
Q Consensus 32 ~~~~~~-~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~--~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~ 108 (555)
.+++++ -++-.++++|+++++++.+|+++++++|||||||. ++|.++. ...++++.|+++++.++...+.
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-------~g~tlVisPl~sL~~dqv~~l~ 86 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-------DGLTLVVSPLISLMKDQVDQLL 86 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-------CCCEEEEecHHHHHHHHHHHHH
Confidence 344554 35667899999999999999999999999999994 5554432 2357888999999998887765
Q ss_pred HHhCCccCCEEEEEEecCCCCCchh---------------------hHH--HhhcCCCCCCCceeEeecccccccchhHH
Q 008735 109 EESGVELGQRVGYSIRFDDRTSTST---------------------RIK--EALLDPYLSRYSAIIVDEAHERTVHTDVL 165 (555)
Q Consensus 109 ~~~~~~~~~~vg~~~~~~~~~~~~~---------------------~i~--~~~~~~~l~~~~~iIiDE~He~~~~~d~l 165 (555)
.. +. ...+.. ...+... ++. .+.......++++|||||||+...+...+
T Consensus 87 ~~-gi----~~~~~~---s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~f 158 (607)
T PRK11057 87 AN-GV----AAACLN---STQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDF 158 (607)
T ss_pred Hc-CC----cEEEEc---CCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcc
Confidence 42 22 122111 1111110 000 11111123468999999999865544332
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH---HHHhhhCC-C
Q 008735 166 LGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGC-A 241 (555)
Q Consensus 166 l~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~---~~~~~~~~-~ 241 (555)
...++.+...+ . ..++.+++++|||++.. ++.+.++- .
T Consensus 159 r~~y~~L~~l~-------------------------------------~-~~p~~~~v~lTAT~~~~~~~di~~~l~l~~ 200 (607)
T PRK11057 159 RPEYAALGQLR-------------------------------------Q-RFPTLPFMALTATADDTTRQDIVRLLGLND 200 (607)
T ss_pred cHHHHHHHHHH-------------------------------------H-hCCCCcEEEEecCCChhHHHHHHHHhCCCC
Confidence 22222221111 0 01678999999999654 34444432 2
Q ss_pred CeEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEe
Q 008735 242 KAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI 321 (555)
Q Consensus 242 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~l 321 (555)
+.+.+..... .+..|......... ..+........++++||||+|+++|+.++..|.+. ++.+..+
T Consensus 201 ~~~~~~~~~r-~nl~~~v~~~~~~~----~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~---------g~~v~~~ 266 (607)
T PRK11057 201 PLIQISSFDR-PNIRYTLVEKFKPL----DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR---------GISAAAY 266 (607)
T ss_pred eEEEECCCCC-CcceeeeeeccchH----HHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC---------CCCEEEe
Confidence 3333322111 12222222222222 22333333445778999999999999999999876 8889999
Q ss_pred cCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccC
Q 008735 322 FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 401 (555)
Q Consensus 322 h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaG 401 (555)
||+|+.++|.++++.|++|+++|||||+++++|||+|+|++||+ || .|.|..+|+||+||||
T Consensus 267 Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~--------~d----------~P~s~~~y~Qr~GRaG 328 (607)
T PRK11057 267 HAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FD----------IPRNIESYYQETGRAG 328 (607)
T ss_pred cCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE--------eC----------CCCCHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999 87 6899999999999999
Q ss_pred CCC-CCEEEEccChhhHh
Q 008735 402 REG-PGKCFRLYPENEFD 418 (555)
Q Consensus 402 R~~-~G~~~~l~~~~~~~ 418 (555)
|.| +|.|+.+|+..++.
T Consensus 329 R~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 329 RDGLPAEAMLFYDPADMA 346 (607)
T ss_pred CCCCCceEEEEeCHHHHH
Confidence 999 89999999887754
No 40
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=297.64 Aligned_cols=317 Identities=20% Similarity=0.279 Sum_probs=244.5
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhc--cc-cCCCcEEEEeCccHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHA--GF-CRDGKLIGVTQPRRVAAVT 102 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~--~~-~~~~~~i~~~~P~r~l~~~ 102 (555)
++.....+...++...+++|+..++.+..|+++++.|-|||||| +++|.+-+.. .+ ..++..++++.|+|+++.|
T Consensus 90 S~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q 169 (543)
T KOG0342|consen 90 SPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQ 169 (543)
T ss_pred CHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHH
Confidence 66788899999999999999999999999999999999999999 6666554332 22 2346679999999999999
Q ss_pred HHHHHHHHhCCccCCEEEEEEecCCCCC--------------chhhHHHhhcCC---CCCCCceeEeecccccccchhHH
Q 008735 103 VAKRVAEESGVELGQRVGYSIRFDDRTS--------------TSTRIKEALLDP---YLSRYSAIIVDEAHERTVHTDVL 165 (555)
Q Consensus 103 ~~~~~~~~~~~~~~~~vg~~~~~~~~~~--------------~~~~i~~~~~~~---~l~~~~~iIiDE~He~~~~~d~l 165 (555)
.+....+.+....+..+|+.+.+..... ++.++..++.+. ...+.+++|+|||
T Consensus 170 ~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA---------- 239 (543)
T KOG0342|consen 170 IFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA---------- 239 (543)
T ss_pred HHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc----------
Confidence 9988877776655667777766544322 233333444332 2566789999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCH--HHHHhhhCC--C
Q 008735 166 LGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFSEYFGC--A 241 (555)
Q Consensus 166 l~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~--~~~~~~~~~--~ 241 (555)
|++++++|..+++.+++-+. ...|..++|||.+. +++++..-. +
T Consensus 240 ----------------------------DrlLd~GF~~di~~Ii~~lp----k~rqt~LFSAT~~~kV~~l~~~~L~~d~ 287 (543)
T KOG0342|consen 240 ----------------------------DRLLDIGFEEDVEQIIKILP----KQRQTLLFSATQPSKVKDLARGALKRDP 287 (543)
T ss_pred ----------------------------hhhhhcccHHHHHHHHHhcc----ccceeeEeeCCCcHHHHHHHHHhhcCCc
Confidence 79999999999999999998 66799999999955 455543222 2
Q ss_pred CeEEeCCcc-----ccceEEEcCCCCCChHHHHHHHHHHHHhcCC-CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCC
Q 008735 242 KAVHVQGRQ-----FPVEILYTLYPEPDYLDATLITIFQVHLDEA-PGDILVFLTGQEEIESVERLVQERLLQLPEASRK 315 (555)
Q Consensus 242 ~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~ 315 (555)
..+.+.... ..++.-|...+....+.... ...+... ..+++|||+|...+.-++..|... +
T Consensus 288 ~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~----~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~---------d 354 (543)
T KOG0342|consen 288 VFVNVDDGGERETHERLEQGYVVAPSDSRFSLLY----TFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI---------D 354 (543)
T ss_pred eEeecCCCCCcchhhcccceEEeccccchHHHHH----HHHHHhcCCceEEEEechhhHHHHHHHHHhhc---------C
Confidence 222222111 12333344444443333222 2222222 378999999999999999999865 8
Q ss_pred eEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHH
Q 008735 316 LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQ 395 (555)
Q Consensus 316 ~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Q 395 (555)
+.|..+||++++..|..++..|++.+.-||||||++++|+|+|+|+.||+ || .|.+..+|+|
T Consensus 355 lpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ--------~~----------~P~d~~~YIH 416 (543)
T KOG0342|consen 355 LPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ--------YD----------PPSDPEQYIH 416 (543)
T ss_pred CchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE--------eC----------CCCCHHHHHH
Confidence 89999999999999999999999999999999999999999999999999 88 6899999999
Q ss_pred HhcccCCCC-CCEEEEccChhhH
Q 008735 396 RSGRAGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 396 r~GRaGR~~-~G~~~~l~~~~~~ 417 (555)
|+||+||.| .|+.+.+..+.+.
T Consensus 417 RvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 417 RVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred HhccccccCCCceEEEEeChhHH
Confidence 999999998 9999998877654
No 41
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-36 Score=298.47 Aligned_cols=365 Identities=22% Similarity=0.260 Sum_probs=255.8
Q ss_pred CCCCCCCCCCCC-hhHHHH-HHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhcccc-----CC
Q 008735 16 PKLHSKPFFNDS-SSRRQK-ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFC-----RD 86 (555)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~~-----~~ 86 (555)
..+....|..+. ++-+.+ +-...+.-.++.+|+++|+.+.+|++++|-++|||||| |++|++-...... ..
T Consensus 131 ~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~ 210 (708)
T KOG0348|consen 131 APFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSD 210 (708)
T ss_pred cccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccC
Confidence 334445555554 443333 44567888999999999999999999999999999999 8888776544332 23
Q ss_pred CcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhHH--------------HhhcC---CCCCCCce
Q 008735 87 GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK--------------EALLD---PYLSRYSA 149 (555)
Q Consensus 87 ~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~--------------~~~~~---~~l~~~~~ 149 (555)
|.-++++.|+|+++.|+++.+.+.....--..-|+.++++..-+...+++ ..+.+ -.++++.+
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeE
Confidence 66799999999999999999888776432223345555565555554444 22221 23678999
Q ss_pred eEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhcccc---C------CCCc
Q 008735 150 IIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGR---K------FAPL 220 (555)
Q Consensus 150 iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~---~------~~~~ 220 (555)
+|+||+ |.+++.+|+.++..+++.+... . .+..
T Consensus 291 lVlDEa--------------------------------------DrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~ 332 (708)
T KOG0348|consen 291 LVLDEA--------------------------------------DRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQL 332 (708)
T ss_pred EEecch--------------------------------------hHHHhccchhhHHHHHHHHhhccchhcccccccHHH
Confidence 999999 7999999999999999888321 1 1135
Q ss_pred eEEEeccCC--CHHHHHhhhCCCC-eEEeC----------------------------CccccceEEEcCCCCCChHHHH
Q 008735 221 KLIIMSASL--DARGFSEYFGCAK-AVHVQ----------------------------GRQFPVEILYTLYPEPDYLDAT 269 (555)
Q Consensus 221 ~ii~~SAT~--~~~~~~~~~~~~~-~~~~~----------------------------~~~~~v~~~~~~~~~~~~~~~~ 269 (555)
+-+++|||+ ....++..--..| .+... .-+..+..+|...|..-.+...
T Consensus 333 q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~L 412 (708)
T KOG0348|consen 333 QNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVAL 412 (708)
T ss_pred HhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHH
Confidence 678999999 3455654322112 11110 0011112233334444344455
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcC-------------CCCCCCeEEEEecCCCCHHHHHhhcCc
Q 008735 270 LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL-------------PEASRKLVTVPIFSSLPSEQQMRVFAP 336 (555)
Q Consensus 270 ~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~-------------~~~~~~~~v~~lh~~l~~~~r~~i~~~ 336 (555)
...+.+........+++||+++.+.++--++++...+... ..-..+..++-+||+|.+++|..+|+.
T Consensus 413 aa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~ 492 (708)
T KOG0348|consen 413 AALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQE 492 (708)
T ss_pred HHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHh
Confidence 5556666666666789999999999998888887765430 111235578999999999999999999
Q ss_pred CCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccC--
Q 008735 337 AAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP-- 413 (555)
Q Consensus 337 f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~-- 413 (555)
|......|++|||++++|+|+|+|++||+ || .|.+.++|+||+||+.|.| .|.+..+..
T Consensus 493 Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd----------~P~s~adylHRvGRTARaG~kG~alLfL~P~ 554 (708)
T KOG0348|consen 493 FSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YD----------PPFSTADYLHRVGRTARAGEKGEALLFLLPS 554 (708)
T ss_pred hccccceEEEehhhhhccCCCCCcCeEEE--------eC----------CCCCHHHHHHHhhhhhhccCCCceEEEeccc
Confidence 99999999999999999999999999999 99 6999999999999999999 888777664
Q ss_pred hhhHhcccCCCCCcccccCchHH
Q 008735 414 ENEFDKLEDSTKPEIKRCNLSNV 436 (555)
Q Consensus 414 ~~~~~~~~~~~~pei~~~~l~~~ 436 (555)
+.+|-.......+.+.+-++..+
T Consensus 555 Eaey~~~l~~~~~~l~q~~~~~~ 577 (708)
T KOG0348|consen 555 EAEYVNYLKKHHIMLLQFDMEIL 577 (708)
T ss_pred HHHHHHHHHhhcchhhccchhhh
Confidence 44444433333333444444433
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1e-35 Score=332.72 Aligned_cols=327 Identities=20% Similarity=0.208 Sum_probs=216.2
Q ss_pred CCChhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc-------CCCcEEEEeCccH
Q 008735 25 NDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-------RDGKLIGVTQPRR 97 (555)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~-------~~~~~i~~~~P~r 97 (555)
...++.+.+.+.+ ++-.++++|+++++.+.+|++++++||||||||..+.+.++..... .++..++++.|++
T Consensus 16 ~~l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtr 94 (876)
T PRK13767 16 DLLRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLR 94 (876)
T ss_pred hhcCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHH
Confidence 3456667777665 4567999999999999999999999999999996555554432211 2345799999999
Q ss_pred HHHHHHHHHHHHH----------hCCcc-CCEEEEEEecCC---------------CCCchhhHHHhhcCC----CCCCC
Q 008735 98 VAAVTVAKRVAEE----------SGVEL-GQRVGYSIRFDD---------------RTSTSTRIKEALLDP----YLSRY 147 (555)
Q Consensus 98 ~l~~~~~~~~~~~----------~~~~~-~~~vg~~~~~~~---------------~~~~~~~i~~~~~~~----~l~~~ 147 (555)
+++.++.+++... .+... +..++.... +. .++++..+..++..+ .++++
T Consensus 95 aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~G-dt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l 173 (876)
T PRK13767 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTG-DTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTV 173 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcC-CCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcC
Confidence 9999988764421 12222 222222111 11 112222232333332 36789
Q ss_pred ceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEecc
Q 008735 148 SAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSA 227 (555)
Q Consensus 148 ~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 227 (555)
++|||||+|+ +++..++.++...+.++......+.|+|++||
T Consensus 174 ~~VVIDE~H~--------------------------------------l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSA 215 (876)
T PRK13767 174 KWVIVDEIHS--------------------------------------LAENKRGVHLSLSLERLEELAGGEFVRIGLSA 215 (876)
T ss_pred CEEEEechhh--------------------------------------hccCccHHHHHHHHHHHHHhcCCCCeEEEEec
Confidence 9999999994 22223333333333333222225789999999
Q ss_pred CC-CHHHHHhhhCCC-------CeEEeCCcc---ccceEEEcC-----CCCCChHHHHHHHHHHHHhcCCCCcEEEEcCC
Q 008735 228 SL-DARGFSEYFGCA-------KAVHVQGRQ---FPVEILYTL-----YPEPDYLDATLITIFQVHLDEAPGDILVFLTG 291 (555)
Q Consensus 228 T~-~~~~~~~~~~~~-------~~~~~~~~~---~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t 291 (555)
|+ +.+.+++|++.. ++..+.... ..+...... .............+..... ..+++||||||
T Consensus 216 Tl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nT 293 (876)
T PRK13767 216 TIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNT 293 (876)
T ss_pred ccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCC
Confidence 99 778888988642 122222211 111111100 0111111222333333332 25789999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccc
Q 008735 292 QEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 371 (555)
Q Consensus 292 ~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~ 371 (555)
++.|+.++..|.+.+... ..+..+..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 294 r~~ae~la~~L~~~~~~~---~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~------ 364 (876)
T PRK13767 294 RSGAERVLYNLRKRFPEE---YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL------ 364 (876)
T ss_pred HHHHHHHHHHHHHhchhh---ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE------
Confidence 999999999998754321 12467899999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccccceeecCHHhHHHHhcccCCCC----CCEEEEccCh
Q 008735 372 RLYDPVKGMESLLVVPISKAQALQRSGRAGREG----PGKCFRLYPE 414 (555)
Q Consensus 372 ~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~----~G~~~~l~~~ 414 (555)
|| .|.+.++|+||+|||||.+ .|.++.....
T Consensus 365 --~~----------~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~ 399 (876)
T PRK13767 365 --LG----------SPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRD 399 (876)
T ss_pred --eC----------CCCCHHHHHHhcccCCCCCCCCCcEEEEEcCch
Confidence 66 6889999999999999874 4777765433
No 43
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-37 Score=302.65 Aligned_cols=318 Identities=20% Similarity=0.276 Sum_probs=238.3
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCC----CcEEEEeCccHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----GKLIGVTQPRRVAAVTV 103 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~----~~~i~~~~P~r~l~~~~ 103 (555)
+..+...+...++..|+|+|...|+...-|++++.+|.||||||..+.+.+++..+-.+ -.+|+++.|+|+|+.|+
T Consensus 189 SRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv 268 (691)
T KOG0338|consen 189 SRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQV 268 (691)
T ss_pred chHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHH
Confidence 44566778888999999999999999999999999999999999666666666543322 34899999999999887
Q ss_pred HHH---HHHHhCCccCCEEEEEE----------ecCCCCCchhhHHHhhc-CC--CCCCCceeEeecccccccchhHHHH
Q 008735 104 AKR---VAEESGVELGQRVGYSI----------RFDDRTSTSTRIKEALL-DP--YLSRYSAIIVDEAHERTVHTDVLLG 167 (555)
Q Consensus 104 ~~~---~~~~~~~~~~~~vg~~~----------~~~~~~~~~~~i~~~~~-~~--~l~~~~~iIiDE~He~~~~~d~ll~ 167 (555)
++. ++.+....+|..+|... +.+..+.++.++...+. .| .++++.++|+|||
T Consensus 269 ~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA------------ 336 (691)
T KOG0338|consen 269 HSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA------------ 336 (691)
T ss_pred HHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH------------
Confidence 654 66677777777776331 11222333444443333 33 3788999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCC--HHHHHhhhCCCCe-E
Q 008735 168 LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFSEYFGCAKA-V 244 (555)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~--~~~~~~~~~~~~~-~ 244 (555)
|+||+.+|..++..++..|. .+.|.+++|||++ ..+++..--+.|+ +
T Consensus 337 --------------------------DRMLeegFademnEii~lcp----k~RQTmLFSATMteeVkdL~slSL~kPvri 386 (691)
T KOG0338|consen 337 --------------------------DRMLEEGFADEMNEIIRLCP----KNRQTMLFSATMTEEVKDLASLSLNKPVRI 386 (691)
T ss_pred --------------------------HHHHHHHHHHHHHHHHHhcc----ccccceeehhhhHHHHHHHHHhhcCCCeEE
Confidence 79999999999999999998 6789999999994 4566655434443 2
Q ss_pred EeCCcc-c--cceEEEc-CCCCCCh-HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 008735 245 HVQGRQ-F--PVEILYT-LYPEPDY-LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 319 (555)
Q Consensus 245 ~~~~~~-~--~v~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~ 319 (555)
.+.... . .+...|. ..+..+. .+.++..+ ........++||+.|++.|+.+.-.|--. ++.+.
T Consensus 387 fvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l---~~rtf~~~~ivFv~tKk~AHRl~IllGLl---------gl~ag 454 (691)
T KOG0338|consen 387 FVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL---ITRTFQDRTIVFVRTKKQAHRLRILLGLL---------GLKAG 454 (691)
T ss_pred EeCCccccchhhhHHHheeccccccccHHHHHHH---HHHhcccceEEEEehHHHHHHHHHHHHHh---------hchhh
Confidence 222111 1 1111111 1111111 12222222 22222567999999999999987766443 88999
Q ss_pred EecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcc
Q 008735 320 PIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 399 (555)
Q Consensus 320 ~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GR 399 (555)
-+||++++++|.+.++.|+++++.||||||++++|+||++|.+||| |+ .|.+...|+||+||
T Consensus 455 ElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN--------y~----------mP~t~e~Y~HRVGR 516 (691)
T KOG0338|consen 455 ELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN--------YA----------MPKTIEHYLHRVGR 516 (691)
T ss_pred hhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe--------cc----------CchhHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999 88 79999999999999
Q ss_pred cCCCC-CCEEEEccChhhH
Q 008735 400 AGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 400 aGR~~-~G~~~~l~~~~~~ 417 (555)
+.|.| .|..+.|..+++-
T Consensus 517 TARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 517 TARAGRAGRSVTLVGESDR 535 (691)
T ss_pred hhhcccCcceEEEeccccH
Confidence 99999 9999999977643
No 44
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=302.34 Aligned_cols=321 Identities=19% Similarity=0.196 Sum_probs=241.9
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhcc--c-----cCC--CcEEEEeCcc
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAG--F-----CRD--GKLIGVTQPR 96 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~--~-----~~~--~~~i~~~~P~ 96 (555)
.+.+..-++..+.-.++++|+-.++.+..|++++++|+|||||| +++|.+-.... . ... ...++++.|+
T Consensus 82 ~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapT 161 (482)
T KOG0335|consen 82 GEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPT 161 (482)
T ss_pred hHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCc
Confidence 33455567778889999999999999999999999999999999 66666543221 1 111 3579999999
Q ss_pred HHHHHHHHHHHHHHhCCccCC-EEEEEE------------ecCCCCCchhhHHHhhcC--CCCCCCceeEeecccccccc
Q 008735 97 RVAAVTVAKRVAEESGVELGQ-RVGYSI------------RFDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVH 161 (555)
Q Consensus 97 r~l~~~~~~~~~~~~~~~~~~-~vg~~~------------~~~~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~ 161 (555)
|+|+.|++.+..++.....-. .+.|.. +.+..+.+..++..++.. -.+.++.++|+|||
T Consensus 162 ReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEA------ 235 (482)
T KOG0335|consen 162 RELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEA------ 235 (482)
T ss_pred HHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecch------
Confidence 999999999877766533222 122221 111223334444444443 34788999999999
Q ss_pred hhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhc-cCCCCcccchhhhccccCCCCceEEEeccCCCH--HHHHhhh
Q 008735 162 TDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILD-RGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFSEYF 238 (555)
Q Consensus 162 ~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~--~~~~~~~ 238 (555)
|.|+| ++|++++.+++.+.........|.+++|||.+. ..++.+|
T Consensus 236 --------------------------------DrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~f 283 (482)
T KOG0335|consen 236 --------------------------------DRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADF 283 (482)
T ss_pred --------------------------------HHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHH
Confidence 78999 999999999999997655567899999999944 3455444
Q ss_pred CC--CC---eEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCC-----cEEEEcCCHHHHHHHHHHHHHHhhc
Q 008735 239 GC--AK---AVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPG-----DILVFLTGQEEIESVERLVQERLLQ 308 (555)
Q Consensus 239 ~~--~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~iLVF~~t~~~~~~l~~~L~~~~~~ 308 (555)
.. .. +..+.+....+..........+.....++.+.........+ .++|||.|++.+..++..|...
T Consensus 284 l~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~--- 360 (482)
T KOG0335|consen 284 LKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN--- 360 (482)
T ss_pred hhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC---
Confidence 22 21 22333444444444455555555555444433332111233 7999999999999999999876
Q ss_pred CCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeec
Q 008735 309 LPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPI 388 (555)
Q Consensus 309 ~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~ 388 (555)
++....+||..++.+|.+.++.|+.|...++|||+++++|+|+|+|++||+ || .|.
T Consensus 361 ------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn--------yD----------mP~ 416 (482)
T KOG0335|consen 361 ------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN--------YD----------MPA 416 (482)
T ss_pred ------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE--------ee----------cCc
Confidence 899999999999999999999999999999999999999999999999999 99 789
Q ss_pred CHHhHHHHhcccCCCC-CCEEEEccC
Q 008735 389 SKAQALQRSGRAGREG-PGKCFRLYP 413 (555)
Q Consensus 389 s~~~~~Qr~GRaGR~~-~G~~~~l~~ 413 (555)
+..+|+||+||+||.| .|.+..|++
T Consensus 417 d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 417 DIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred chhhHHHhccccccCCCCceeEEEec
Confidence 9999999999999999 899999998
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.7e-35 Score=319.51 Aligned_cols=299 Identities=17% Similarity=0.216 Sum_probs=206.3
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 008735 38 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 117 (555)
Q Consensus 38 ~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~ 117 (555)
-++-.++++|+++++++.+|+++++++|||+|||.+....++.. ++.++++.|++.++.++...+... +.
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----~g~~lVisPl~sL~~dq~~~l~~~-gi---- 78 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----KGLTVVISPLISLMKDQVDQLRAA-GV---- 78 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----CCcEEEEcCCHHHHHHHHHHHHHc-CC----
Confidence 45667899999999999999999999999999994433333322 235778899999999888877552 32
Q ss_pred EEEEEEecCCCCCch---------------------hhHH--HhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHH
Q 008735 118 RVGYSIRFDDRTSTS---------------------TRIK--EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 174 (555)
Q Consensus 118 ~vg~~~~~~~~~~~~---------------------~~i~--~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~ 174 (555)
.+.+... ..+.. .++. .+.......++++|||||||+...+...+...+.++..
T Consensus 79 ~~~~~~s---~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 79 AAAYLNS---TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred cEEEEeC---CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 2222211 11111 0100 11111124578999999999866544333332222222
Q ss_pred hhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH---HHHhhhCCCC-eEEeCCcc
Q 008735 175 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAK-AVHVQGRQ 250 (555)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~---~~~~~~~~~~-~~~~~~~~ 250 (555)
.+. ..++.+++++|||++.. ++.++++... ...+.. .
T Consensus 156 l~~--------------------------------------~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-~ 196 (591)
T TIGR01389 156 LAE--------------------------------------RFPQVPRIALTATADAETRQDIRELLRLADANEFITS-F 196 (591)
T ss_pred HHH--------------------------------------hCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC-C
Confidence 110 00455699999999654 4556665322 222221 1
Q ss_pred ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHH
Q 008735 251 FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 330 (555)
Q Consensus 251 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 330 (555)
...+..+......+... .+........++++||||+|+++++.+++.|... ++.+..+||+|+.++|
T Consensus 197 ~r~nl~~~v~~~~~~~~----~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~---------g~~~~~~H~~l~~~~R 263 (591)
T TIGR01389 197 DRPNLRFSVVKKNNKQK----FLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ---------GISALAYHAGLSNKVR 263 (591)
T ss_pred CCCCcEEEEEeCCCHHH----HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC---------CCCEEEEECCCCHHHH
Confidence 12223332222222222 2233333334678999999999999999999875 7889999999999999
Q ss_pred HhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEE
Q 008735 331 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 409 (555)
Q Consensus 331 ~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~ 409 (555)
..+++.|.+|.++|||||+++++|||+|+|++||+ || .|.|..+|+||+|||||.| +|.|+
T Consensus 264 ~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~--------~~----------~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 264 AENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH--------YD----------MPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred HHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE--------cC----------CCCCHHHHhhhhccccCCCCCceEE
Confidence 99999999999999999999999999999999999 77 6889999999999999999 89999
Q ss_pred EccChhhHhc
Q 008735 410 RLYPENEFDK 419 (555)
Q Consensus 410 ~l~~~~~~~~ 419 (555)
.+|+..+...
T Consensus 326 l~~~~~d~~~ 335 (591)
T TIGR01389 326 LLYSPADIAL 335 (591)
T ss_pred EecCHHHHHH
Confidence 9998877543
No 46
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3e-36 Score=297.83 Aligned_cols=329 Identities=17% Similarity=0.264 Sum_probs=255.4
Q ss_pred CCCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHH--hccccC-CCcEEEEe
Q 008735 20 SKPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLF--HAGFCR-DGKLIGVT 93 (555)
Q Consensus 20 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~--~~~~~~-~~~~i~~~ 93 (555)
.+-|..++ +.+..+.|+...+..++++|++.|+....|++++-.|-|||||| +++|.+-. ...|.. .|--++++
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 34566666 66788899999999999999999999999999999999999999 55555432 222332 36679999
Q ss_pred CccHHHHHHHHHHHHH---HhCCccCCEEEEEE---------ecCCCCCchhhHHHhh-cCCCC--CCCceeEeeccccc
Q 008735 94 QPRRVAAVTVAKRVAE---ESGVELGQRVGYSI---------RFDDRTSTSTRIKEAL-LDPYL--SRYSAIIVDEAHER 158 (555)
Q Consensus 94 ~P~r~l~~~~~~~~~~---~~~~~~~~~vg~~~---------~~~~~~~~~~~i~~~~-~~~~l--~~~~~iIiDE~He~ 158 (555)
.|+|++|.|....+.+ ..+...|..+|... +.+..+.++.++...+ .+|.+ +++.++|+|||
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA--- 224 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA--- 224 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccH---
Confidence 9999999999887544 33344455555221 1111223344444333 34444 57889999999
Q ss_pred ccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC--CHHHHHh
Q 008735 159 TVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSE 236 (555)
Q Consensus 159 ~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~--~~~~~~~ 236 (555)
|+|+|++|...+..+++.++ +..|.+++|||. +..++++
T Consensus 225 -----------------------------------DR~LDMGFk~tL~~Ii~~lP----~~RQTLLFSATqt~svkdLaR 265 (758)
T KOG0343|consen 225 -----------------------------------DRMLDMGFKKTLNAIIENLP----KKRQTLLFSATQTKSVKDLAR 265 (758)
T ss_pred -----------------------------------HHHHHHhHHHHHHHHHHhCC----hhheeeeeecccchhHHHHHH
Confidence 79999999999999999998 677999999999 6778887
Q ss_pred h-hCCCCeEEeC-----CccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCC
Q 008735 237 Y-FGCAKAVHVQ-----GRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP 310 (555)
Q Consensus 237 ~-~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~ 310 (555)
. +.++..+.+. +.+..+..+|...+..+ .+..+......+...++|||++|.+++.-++..+.+.
T Consensus 266 LsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~----Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl----- 336 (758)
T KOG0343|consen 266 LSLKDPVYVSVHENAVAATPSNLQQSYVIVPLED----KIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL----- 336 (758)
T ss_pred hhcCCCcEEEEeccccccChhhhhheEEEEehhh----HHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-----
Confidence 6 3444444443 22333445555555444 4445555666677888999999999999999888765
Q ss_pred CCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCH
Q 008735 311 EASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISK 390 (555)
Q Consensus 311 ~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~ 390 (555)
.+++.+..+||.|.+..|..++..|-...--|++|||++++|+|+|.|++||+ || +|.+.
T Consensus 337 --rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ--------~D----------CPedv 396 (758)
T KOG0343|consen 337 --RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ--------VD----------CPEDV 396 (758)
T ss_pred --CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE--------ec----------CchhH
Confidence 35889999999999999999999999888899999999999999999999999 88 89999
Q ss_pred HhHHHHhcccCCCC-CCEEEEccChhhHhc
Q 008735 391 AQALQRSGRAGREG-PGKCFRLYPENEFDK 419 (555)
Q Consensus 391 ~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~~ 419 (555)
.+|+||+||+.|.+ .|.|+.+.++++.+.
T Consensus 397 ~tYIHRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 397 DTYIHRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred HHHHHHhhhhhcccCCCceEEEEcchhHHH
Confidence 99999999999999 999999998776443
No 47
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.4e-35 Score=310.71 Aligned_cols=443 Identities=17% Similarity=0.198 Sum_probs=298.6
Q ss_pred CcHHHHHHHHHHH-hcCCeEEEEcCCCCchhhHHHHHHHhccc--------cCCCcEEEEeCccHHHHHHHHHHHHHHhC
Q 008735 42 PIASVEKRLVEEV-RKNDILIIVGETGSGKTTQLPQFLFHAGF--------CRDGKLIGVTQPRRVAAVTVAKRVAEESG 112 (555)
Q Consensus 42 ~~~~~Q~~~i~~i-~~~~~~ii~apTGsGKT~~l~~~i~~~~~--------~~~~~~i~~~~P~r~l~~~~~~~~~~~~~ 112 (555)
.+..+|.++.+.+ .++.|.+||||||||||-++.+.++.... ..+.-+|+++.|.++||.++.+.+.+.+.
T Consensus 110 ~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~ 189 (1230)
T KOG0952|consen 110 EFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA 189 (1230)
T ss_pred HHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc
Confidence 4567899999876 56889999999999999777777765432 12355899999999999999999887765
Q ss_pred CccCCEEEEEEecCCCCC------------chhhHHHhh----c-CCCCCCCceeEeecccccccchhHHHHHHHHHHHh
Q 008735 113 VELGQRVGYSIRFDDRTS------------TSTRIKEAL----L-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 175 (555)
Q Consensus 113 ~~~~~~vg~~~~~~~~~~------------~~~~i~~~~----~-~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~ 175 (555)
.+|..|+-..+ +.... ++++...+. . ..+++.++++||||+|
T Consensus 190 -~~gi~v~ELTG-D~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVH------------------- 248 (1230)
T KOG0952|consen 190 -PLGISVRELTG-DTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVH------------------- 248 (1230)
T ss_pred -cccceEEEecC-cchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeeh-------------------
Confidence 33444442221 22111 111111111 0 2346778999999999
Q ss_pred hcccccCCCCCCCCCCcchhhhccCCCCcccchhhhcccc---CCCCceEEEeccCC-CHHHHHhhhCCC---CeEEeCC
Q 008735 176 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGR---KFAPLKLIIMSASL-DARGFSEYFGCA---KAVHVQG 248 (555)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~---~~~~~~ii~~SAT~-~~~~~~~~~~~~---~~~~~~~ 248 (555)
|+...+|+.++.++.+.... .-..+|+|++|||+ |.+++++|++.. -++.+.+
T Consensus 249 --------------------lLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~ 308 (1230)
T KOG0952|consen 249 --------------------LLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQ 308 (1230)
T ss_pred --------------------hhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecc
Confidence 77778888888887777421 22679999999999 899999999863 3566666
Q ss_pred ccccce--EEEcCCCCC------C-hHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCC-----CC
Q 008735 249 RQFPVE--ILYTLYPEP------D-YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA-----SR 314 (555)
Q Consensus 249 ~~~~v~--~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~-----~~ 314 (555)
+..|+. ..+...... + .-+...+.+.+... .+.+++|||++|+++.+.|+.|.+........ .+
T Consensus 309 ~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~ 386 (1230)
T KOG0952|consen 309 RYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSP 386 (1230)
T ss_pred cccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCCh
Confidence 555544 333222221 1 11222333333333 37789999999999999999998875422111 11
Q ss_pred --C-------eEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccce
Q 008735 315 --K-------LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLV 385 (555)
Q Consensus 315 --~-------~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~ 385 (555)
+ .....+|+||..++|..++..|+.|.++|++||.++++|||+|+-.++|. .++.||++.|.-
T Consensus 387 ~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK----GT~~ydsskg~f---- 458 (1230)
T KOG0952|consen 387 RNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK----GTQVYDSSKGSF---- 458 (1230)
T ss_pred hhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec----CCcccccccCce----
Confidence 2 45778899999999999999999999999999999999999999999996 788999887743
Q ss_pred eecCHHhHHHHhcccCCCC---CCEEEEccChhhH---hcccCCCCCcccccCc----hHHHHHHhhcC-CCCccC-CcC
Q 008735 386 VPISKAQALQRSGRAGREG---PGKCFRLYPENEF---DKLEDSTKPEIKRCNL----SNVILQLKALG-VDDIIG-FDF 453 (555)
Q Consensus 386 ~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~---~~~~~~~~pei~~~~l----~~~~l~l~~~~-~~~~~~-~~~ 453 (555)
.-.+..+.+|..|||||++ .|..+.+-+.+.. ..+...+.| .++.+ .+.+-.-.++| +.++.. .+|
T Consensus 459 ~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~p--iES~~~~~L~dnLnAEi~LgTVt~VdeAVeW 536 (1230)
T KOG0952|consen 459 VDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNP--IESQLLPCLIDNLNAEISLGTVTNVDEAVEW 536 (1230)
T ss_pred eeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCCh--hHHHHHHHHHHhhhhheeeceeecHHHHHHH
Confidence 3577889999999999998 7888888765543 333332222 11111 11111111111 111100 011
Q ss_pred C-------------------------CCC----cHHHHHHHHHHHHHcCCc--cC-CC--CCCHHHHhhcccCCCChHHH
Q 008735 454 M-------------------------EKP----SRASIIKSLEQLFLLGAL--TD-DC--KLSDPVGHQMARLPLDPIYS 499 (555)
Q Consensus 454 ~-------------------------~~p----~~~~~~~al~~L~~~g~l--~~-~~--~~T~~lG~~~~~~~~~~~~~ 499 (555)
+ +|- ..+.+..++..|.+...+ |. ++ ..|+ +||.++.+|+..+++
T Consensus 537 L~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~std-lGR~aS~yYik~ETm 615 (1230)
T KOG0952|consen 537 LKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTD-LGRVASNYYIKYETM 615 (1230)
T ss_pred hhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccc-hhhhhhhhhhhhHHH
Confidence 1 222 223455677777766554 33 23 5798 999999999999999
Q ss_pred HHHHHhhh-cCCHHHHHHHHHhhcCCCcccCChhhHHHHH
Q 008735 500 KALIVAGQ-FNCLEEMLITVAMLSVESIFFRSPGEVRRGK 538 (555)
Q Consensus 500 ~~l~~~~~-~~~~~~~l~i~a~~~~~~~~~~~~~~~~~~~ 538 (555)
+.+..... +--.+++|.|+|.-++-+-.--..++.+.-+
T Consensus 616 e~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~ 655 (1230)
T KOG0952|consen 616 ETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELK 655 (1230)
T ss_pred HHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHH
Confidence 99999987 7788888888887776654443344444333
No 48
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-35 Score=277.07 Aligned_cols=333 Identities=18% Similarity=0.216 Sum_probs=253.3
Q ss_pred CCCCCCCCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcC--CeEEEEcCCCCchhhHHHHHHHhccc-cCCCcEE
Q 008735 15 NPKLHSKPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLI 90 (555)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~--~~~ii~apTGsGKT~~l~~~i~~~~~-~~~~~~i 90 (555)
.|-.+.+.|.++. ++.+.+.+-.+++-.|+.+|+.+++.++.+ +++|.++.+|+|||+.+.+-++-..- ......+
T Consensus 84 sPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~ 163 (477)
T KOG0332|consen 84 SPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQC 163 (477)
T ss_pred CCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCc
Confidence 3445667777765 667777777899999999999999999865 79999999999999766555554322 2224568
Q ss_pred EEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhh------------HHHhhc---CCCCCCCceeEeecc
Q 008735 91 GVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR------------IKEALL---DPYLSRYSAIIVDEA 155 (555)
Q Consensus 91 ~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~------------i~~~~~---~~~l~~~~~iIiDE~ 155 (555)
+|+.|+|+++.|..+.+.+ +|...+....|.++.. ....... ...|.. --.+..+.++|+|||
T Consensus 164 iCLaPtrELA~Q~~eVv~e-MGKf~~ita~yair~s-k~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEA 241 (477)
T KOG0332|consen 164 ICLAPTRELAPQTGEVVEE-MGKFTELTASYAIRGS-KAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEA 241 (477)
T ss_pred eeeCchHHHHHHHHHHHHH-hcCceeeeEEEEecCc-ccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecch
Confidence 8899999999999987754 4444466677777644 1111111 112221 223678899999999
Q ss_pred cccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCC--HHH
Q 008735 156 HERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARG 233 (555)
Q Consensus 156 He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~--~~~ 233 (555)
. .|+-..+++.+-..+...+. ++.|++++|||.. ...
T Consensus 242 D-------------------------------------~Mi~tqG~~D~S~rI~~~lP----~~~QllLFSATf~e~V~~ 280 (477)
T KOG0332|consen 242 D-------------------------------------VMIDTQGFQDQSIRIMRSLP----RNQQLLLFSATFVEKVAA 280 (477)
T ss_pred h-------------------------------------hhhhcccccccchhhhhhcC----CcceEEeeechhHHHHHH
Confidence 5 34555788888888888776 6899999999993 345
Q ss_pred HH-hhhCCCCeEEeCCccc---cceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcC
Q 008735 234 FS-EYFGCAKAVHVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL 309 (555)
Q Consensus 234 ~~-~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~ 309 (555)
|+ +...++..+.+..+.. ++..+|..... .+.....+.+++....-|+.+|||.|++.+..++..+.+.
T Consensus 281 Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~---~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~---- 353 (477)
T KOG0332|consen 281 FALKIVPNANVIILKREELALDNIKQLYVLCAC---RDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE---- 353 (477)
T ss_pred HHHHhcCCCceeeeehhhccccchhhheeeccc---hhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc----
Confidence 55 5667777777765554 44445544433 3444555556655555789999999999999999999886
Q ss_pred CCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecC
Q 008735 310 PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 389 (555)
Q Consensus 310 ~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s 389 (555)
+..|..+||+|..++|..++..|+.|.-+|||+||++++|||++.|++||| ||...... ...+
T Consensus 354 -----Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN--------ydlP~~~~----~~pD 416 (477)
T KOG0332|consen 354 -----GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN--------YDLPVKYT----GEPD 416 (477)
T ss_pred -----CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe--------cCCccccC----CCCC
Confidence 999999999999999999999999999999999999999999999999999 88544333 2478
Q ss_pred HHhHHHHhcccCCCC-CCEEEEccCh
Q 008735 390 KAQALQRSGRAGREG-PGKCFRLYPE 414 (555)
Q Consensus 390 ~~~~~Qr~GRaGR~~-~G~~~~l~~~ 414 (555)
.+.|+||+||+||.| .|.++.|...
T Consensus 417 ~etYlHRiGRtGRFGkkG~a~n~v~~ 442 (477)
T KOG0332|consen 417 YETYLHRIGRTGRFGKKGLAINLVDD 442 (477)
T ss_pred HHHHHHHhcccccccccceEEEeecc
Confidence 899999999999999 9999998743
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.6e-34 Score=307.43 Aligned_cols=379 Identities=18% Similarity=0.217 Sum_probs=257.5
Q ss_pred CCCChhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc------CCCcEEEEeCccH
Q 008735 24 FNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC------RDGKLIGVTQPRR 97 (555)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~------~~~~~i~~~~P~r 97 (555)
+...++.+.+++..+ +-.+++.|.++++.+.+|++++|+||||||||..+.++++..... ..+..++|+.|.|
T Consensus 5 ~~~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 5 FNILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLK 83 (814)
T ss_pred hhhcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHH
Confidence 344577788888888 999999999999999999999999999999995444444332222 2356799999999
Q ss_pred HHHHHHHHHHH---HHhCCccCCEEEEEEecCC----------CCCchhhHHHhhcC----CCCCCCceeEeeccccccc
Q 008735 98 VAAVTVAKRVA---EESGVELGQRVGYSIRFDD----------RTSTSTRIKEALLD----PYLSRYSAIIVDEAHERTV 160 (555)
Q Consensus 98 ~l~~~~~~~~~---~~~~~~~~~~vg~~~~~~~----------~~~~~~~i~~~~~~----~~l~~~~~iIiDE~He~~~ 160 (555)
+|..++..++. +.++..+....|...+... ..+++..+..++.. ..+.++.++||||+|
T Consensus 84 ALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiH---- 159 (814)
T COG1201 84 ALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIH---- 159 (814)
T ss_pred HHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhh----
Confidence 99999888754 4455555444442221111 01122222223322 348899999999999
Q ss_pred chhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhC
Q 008735 161 HTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFG 239 (555)
Q Consensus 161 ~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~ 239 (555)
.+.+..+|.++.-.+.++..... ++|.|++|||+ +.+..++|+.
T Consensus 160 ----------------------------------el~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~~varfL~ 204 (814)
T COG1201 160 ----------------------------------ALAESKRGVQLALSLERLRELAG-DFQRIGLSATVGPPEEVAKFLV 204 (814)
T ss_pred ----------------------------------hhhccccchhhhhhHHHHHhhCc-ccEEEeehhccCCHHHHHHHhc
Confidence 35556666666666666665553 89999999999 8999999996
Q ss_pred CC----CeEEeCC-ccccceEEEcCCCC---CChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCC
Q 008735 240 CA----KAVHVQG-RQFPVEILYTLYPE---PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE 311 (555)
Q Consensus 240 ~~----~~~~~~~-~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~ 311 (555)
+. .++.+.+ +...+++....... ..........+.++... ...+|||+|||..++.++..|.+..
T Consensus 205 g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~----- 277 (814)
T COG1201 205 GFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKK--HRTTLIFTNTRSGAERLAFRLKKLG----- 277 (814)
T ss_pred CCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhh--cCcEEEEEeChHHHHHHHHHHHHhc-----
Confidence 54 3444433 22333333322221 12233444555555444 3479999999999999999998863
Q ss_pred CCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHH
Q 008735 312 ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKA 391 (555)
Q Consensus 312 ~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~ 391 (555)
...+..|||+++.++|..++++|++|+++++|||+.+|.|||+.+|+.||+ |. .|.+.+
T Consensus 278 ---~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq--------~~----------SP~sV~ 336 (814)
T COG1201 278 ---PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ--------LG----------SPKSVN 336 (814)
T ss_pred ---CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE--------eC----------CcHHHH
Confidence 367999999999999999999999999999999999999999999999999 54 699999
Q ss_pred hHHHHhcccCCCC----CCEEEEccChhhHhc--------ccCCCCCcccccCchHHHHHHhhcCCCCccC---------
Q 008735 392 QALQRSGRAGREG----PGKCFRLYPENEFDK--------LEDSTKPEIKRCNLSNVILQLKALGVDDIIG--------- 450 (555)
Q Consensus 392 ~~~Qr~GRaGR~~----~G~~~~l~~~~~~~~--------~~~~~~pei~~~~l~~~~l~l~~~~~~~~~~--------- 450 (555)
.++||+||+|+.- .|..+.....+..+. -.....+++-..+|+-++-++..+-+....+
T Consensus 337 r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vr 416 (814)
T COG1201 337 RFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVR 416 (814)
T ss_pred HHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence 9999999999855 455555443333332 1122235555566655544444332211100
Q ss_pred --CcCCCCCcHHHHHHHHHHHHH
Q 008735 451 --FDFMEKPSRASIIKSLEQLFL 471 (555)
Q Consensus 451 --~~~~~~p~~~~~~~al~~L~~ 471 (555)
.+| .--..+.....++.|..
T Consensus 417 raypy-~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 417 RAYPY-ADLSREDFRLVLRYLAG 438 (814)
T ss_pred hcccc-ccCCHHHHHHHHHHHhh
Confidence 111 11245667777777776
No 50
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-35 Score=282.32 Aligned_cols=317 Identities=19% Similarity=0.266 Sum_probs=235.1
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhccc-----cCCCcEEEEeCccHHHHHH
Q 008735 30 RRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF-----CRDGKLIGVTQPRRVAAVT 102 (555)
Q Consensus 30 ~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~-----~~~~~~i~~~~P~r~l~~~ 102 (555)
.+-+.+.+.++-.|+|+|.++++.+++|.+++.+|.||+||| +++|-++..... ...+..++++.|+++|+.+
T Consensus 230 evmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalq 309 (629)
T KOG0336|consen 230 EVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQ 309 (629)
T ss_pred HHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHH
Confidence 355567788999999999999999999999999999999999 666665533221 2235679999999999999
Q ss_pred HHHHHHHHhCCccCCEEEEEEe------------cCCCCCchhhHHHhhcCC--CCCCCceeEeecccccccchhHHHHH
Q 008735 103 VAKRVAEESGVELGQRVGYSIR------------FDDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGL 168 (555)
Q Consensus 103 ~~~~~~~~~~~~~~~~vg~~~~------------~~~~~~~~~~i~~~~~~~--~l~~~~~iIiDE~He~~~~~d~ll~~ 168 (555)
+.-...++.-.......-|... .+....++.++..+..+. .+..+.++|+|||
T Consensus 310 ie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEA------------- 376 (629)
T KOG0336|consen 310 IEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEA------------- 376 (629)
T ss_pred HHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecch-------------
Confidence 8776655543222111111111 011112223333333332 3778999999999
Q ss_pred HHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCC--HHHHH-hhhCCCCeEE
Q 008735 169 LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFS-EYFGCAKAVH 245 (555)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~--~~~~~-~~~~~~~~~~ 245 (555)
|.|||++|.+++.+++-.+. ++.|.++.|||.+ ...++ +|+.++ ++.
T Consensus 377 -------------------------DrMLDMgFEpqIrkilldiR----PDRqtvmTSATWP~~VrrLa~sY~Kep-~~v 426 (629)
T KOG0336|consen 377 -------------------------DRMLDMGFEPQIRKILLDIR----PDRQTVMTSATWPEGVRRLAQSYLKEP-MIV 426 (629)
T ss_pred -------------------------hhhhcccccHHHHHHhhhcC----CcceeeeecccCchHHHHHHHHhhhCc-eEE
Confidence 79999999999999999988 8999999999994 45565 666554 444
Q ss_pred eCCcc-----ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 008735 246 VQGRQ-----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP 320 (555)
Q Consensus 246 ~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~ 320 (555)
..|.. ..++..+......+.++. ....+ .......++||||..+..+..+..-+.-. ++....
T Consensus 427 ~vGsLdL~a~~sVkQ~i~v~~d~~k~~~-~~~f~--~~ms~ndKvIiFv~~K~~AD~LSSd~~l~---------gi~~q~ 494 (629)
T KOG0336|consen 427 YVGSLDLVAVKSVKQNIIVTTDSEKLEI-VQFFV--ANMSSNDKVIIFVSRKVMADHLSSDFCLK---------GISSQS 494 (629)
T ss_pred EecccceeeeeeeeeeEEecccHHHHHH-HHHHH--HhcCCCceEEEEEechhhhhhccchhhhc---------ccchhh
Confidence 43332 233334433333333322 11111 22344678999999998888776655432 889999
Q ss_pred ecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhccc
Q 008735 321 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRA 400 (555)
Q Consensus 321 lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRa 400 (555)
+||+-.+.+|+..++.|+.|+++||||||++++|+|+|||++|+| || +|...++|+||+||+
T Consensus 495 lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N--------yD----------FP~nIeeYVHRvGrt 556 (629)
T KOG0336|consen 495 LHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN--------YD----------FPRNIEEYVHRVGRT 556 (629)
T ss_pred ccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec--------cC----------CCccHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999 99 899999999999999
Q ss_pred CCCC-CCEEEEccChhhHhc
Q 008735 401 GREG-PGKCFRLYPENEFDK 419 (555)
Q Consensus 401 GR~~-~G~~~~l~~~~~~~~ 419 (555)
||.| .|..+.+++..+...
T Consensus 557 GRaGr~G~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 557 GRAGRTGTSISFLTRNDWSM 576 (629)
T ss_pred ccCCCCcceEEEEehhhHHH
Confidence 9999 999999998877643
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.4e-33 Score=312.32 Aligned_cols=306 Identities=19% Similarity=0.248 Sum_probs=210.2
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhcC------CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHH
Q 008735 29 SRRQKILQQRKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVT 102 (555)
Q Consensus 29 ~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~------~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~ 102 (555)
..+...+.....+.+++.|+++++.+.++ .+.+++||||||||..+..+++.... .+.+++++.|++.|+.|
T Consensus 438 ~~~~~~~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~--~g~qvlvLvPT~~LA~Q 515 (926)
T TIGR00580 438 LEWQQEFEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL--DGKQVAVLVPTTLLAQQ 515 (926)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH--hCCeEEEEeCcHHHHHH
Confidence 34555566666678999999999999875 68999999999999655444443322 25689999999999999
Q ss_pred HHHHHHHHhCCccCCEEEEEEecCCCCCchhhH--------------HHhh-cCCCCCCCceeEeecccccccchhHHHH
Q 008735 103 VAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI--------------KEAL-LDPYLSRYSAIIVDEAHERTVHTDVLLG 167 (555)
Q Consensus 103 ~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i--------------~~~~-~~~~l~~~~~iIiDE~He~~~~~d~ll~ 167 (555)
.++.+.+.+.. .+..++...++.........+ ..++ .+-.+.+++++||||+|+.+....
T Consensus 516 ~~~~f~~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrfgv~~~---- 590 (926)
T TIGR00580 516 HFETFKERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRFGVKQK---- 590 (926)
T ss_pred HHHHHHHHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccccchhHH----
Confidence 99998876642 233333322211100000000 0122 233578999999999997443221
Q ss_pred HHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhh-hCCCC--eE
Q 008735 168 LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEY-FGCAK--AV 244 (555)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~-~~~~~--~~ 244 (555)
..+. .+. .++++++||||+.+..+... .+... .+
T Consensus 591 ---~~L~------------------------------------~~~----~~~~vL~~SATpiprtl~~~l~g~~d~s~I 627 (926)
T TIGR00580 591 ---EKLK------------------------------------ELR----TSVDVLTLSATPIPRTLHMSMSGIRDLSII 627 (926)
T ss_pred ---HHHH------------------------------------hcC----CCCCEEEEecCCCHHHHHHHHhcCCCcEEE
Confidence 1111 111 56899999999977665432 23222 22
Q ss_pred EeC-CccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecC
Q 008735 245 HVQ-GRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS 323 (555)
Q Consensus 245 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~ 323 (555)
..+ ....+++.++.... . ......+.... ..+++++||||+.++++.+++.|++.+ +++.+..+||
T Consensus 628 ~~~p~~R~~V~t~v~~~~-~---~~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~-------p~~~v~~lHG 694 (926)
T TIGR00580 628 ATPPEDRLPVRTFVMEYD-P---ELVREAIRREL--LRGGQVFYVHNRIESIEKLATQLRELV-------PEARIAIAHG 694 (926)
T ss_pred ecCCCCccceEEEEEecC-H---HHHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhC-------CCCeEEEecC
Confidence 222 12234554443221 1 11112222222 236889999999999999999998753 2678999999
Q ss_pred CCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCC
Q 008735 324 SLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE 403 (555)
Q Consensus 324 ~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~ 403 (555)
+|+.++|.++++.|++|+.+|||||+++++|||+|++++||. +|.. ..+.++|+||+||+||.
T Consensus 695 ~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi--------~~a~---------~~gls~l~Qr~GRvGR~ 757 (926)
T TIGR00580 695 QMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII--------ERAD---------KFGLAQLYQLRGRVGRS 757 (926)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE--------ecCC---------CCCHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999997 5531 23456899999999999
Q ss_pred C-CCEEEEccCh
Q 008735 404 G-PGKCFRLYPE 414 (555)
Q Consensus 404 ~-~G~~~~l~~~ 414 (555)
| .|.||.+++.
T Consensus 758 g~~g~aill~~~ 769 (926)
T TIGR00580 758 KKKAYAYLLYPH 769 (926)
T ss_pred CCCeEEEEEECC
Confidence 9 9999999864
No 52
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.7e-34 Score=293.52 Aligned_cols=297 Identities=21% Similarity=0.320 Sum_probs=212.9
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 008735 40 SLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 117 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~ 117 (555)
.-...+-|+++|+.+.+|++++++.|||+||| |++|.++.+ | ..+++.|.-.|...+.+.+.. .|.
T Consensus 15 y~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~------G-~TLVVSPLiSLM~DQV~~l~~-~Gi---- 82 (590)
T COG0514 15 YASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLE------G-LTLVVSPLISLMKDQVDQLEA-AGI---- 82 (590)
T ss_pred ccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcC------C-CEEEECchHHHHHHHHHHHHH-cCc----
Confidence 33345569999999999999999999999999 888888763 2 688899999998877776533 221
Q ss_pred EEEEEEecCCCCCchhhHH-----------------HhhcCCC------CCCCceeEeecccccccchhHHHHHHHHHHH
Q 008735 118 RVGYSIRFDDRTSTSTRIK-----------------EALLDPY------LSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 174 (555)
Q Consensus 118 ~vg~~~~~~~~~~~~~~i~-----------------~~~~~~~------l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~ 174 (555)
...+. ++..+...+.. +.+..+. -..+++++||||||.+.+.+-+.--++++-.
T Consensus 83 ~A~~l---nS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~ 159 (590)
T COG0514 83 RAAYL---NSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGR 159 (590)
T ss_pred eeehh---hcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHH
Confidence 11111 11111111111 1111111 3467999999999988887666655555544
Q ss_pred hhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH---HHHhhhCCCCeEEeCCccc
Q 008735 175 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQF 251 (555)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~---~~~~~~~~~~~~~~~~~~~ 251 (555)
.+. ..+++.++++|||.+.. ++.+.++-.....+.+...
T Consensus 160 l~~--------------------------------------~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd 201 (590)
T COG0514 160 LRA--------------------------------------GLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD 201 (590)
T ss_pred HHh--------------------------------------hCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC
Confidence 331 11688999999999765 3444444322111222222
Q ss_pred cceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHH
Q 008735 252 PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 331 (555)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 331 (555)
..++.|......+...... .+.. ......++.||||.||+.++.++++|... ++.+..|||||+.++|.
T Consensus 202 RpNi~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~---------g~~a~~YHaGl~~~eR~ 270 (590)
T COG0514 202 RPNLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKN---------GISAGAYHAGLSNEERE 270 (590)
T ss_pred CchhhhhhhhcccHHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHC---------CCceEEecCCCCHHHHH
Confidence 2233443333332222222 2222 22444677999999999999999999986 89999999999999999
Q ss_pred hhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEE
Q 008735 332 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 410 (555)
Q Consensus 332 ~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~ 410 (555)
.+.+.|.+++++|+|||.++++|||.|||++||+ || .|.|.++|+|-+|||||.| +..|+.
T Consensus 271 ~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------~~----------lP~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 271 RVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------YD----------LPGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred HHHHHHhcCCCcEEEEeccccCccCCCCceEEEE--------ec----------CCCCHHHHHHHHhhccCCCCcceEEE
Confidence 9999999999999999999999999999999999 88 7999999999999999999 999999
Q ss_pred ccChhhHh
Q 008735 411 LYPENEFD 418 (555)
Q Consensus 411 l~~~~~~~ 418 (555)
||.+.+..
T Consensus 333 l~~~~D~~ 340 (590)
T COG0514 333 LYSPEDIR 340 (590)
T ss_pred eeccccHH
Confidence 99987764
No 53
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.2e-35 Score=280.13 Aligned_cols=328 Identities=19% Similarity=0.240 Sum_probs=240.0
Q ss_pred CCCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhc------cc-cCCCcE
Q 008735 20 SKPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHA------GF-CRDGKL 89 (555)
Q Consensus 20 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~------~~-~~~~~~ 89 (555)
.+.|.... ...+.+.+++++...|+++|-+-++.+.+|++.+-+|-|||||| +.+|.+++.. .+ ...|.-
T Consensus 169 IksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~ 248 (610)
T KOG0341|consen 169 IKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPY 248 (610)
T ss_pred hhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCe
Confidence 44454444 23477788999999999999999999999999999999999999 6677766432 12 234667
Q ss_pred EEEeCccHHHHHHHHHHHHHHhCCc---------cCCEEEEEE----------ecCCCCCchhhHHHhhcCC--CCCCCc
Q 008735 90 IGVTQPRRVAAVTVAKRVAEESGVE---------LGQRVGYSI----------RFDDRTSTSTRIKEALLDP--YLSRYS 148 (555)
Q Consensus 90 i~~~~P~r~l~~~~~~~~~~~~~~~---------~~~~vg~~~----------~~~~~~~~~~~i~~~~~~~--~l~~~~ 148 (555)
-+++.|.|+++.|....+..+.... .+..+|... .....+.++.++..++... .+.-+.
T Consensus 249 gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CR 328 (610)
T KOG0341|consen 249 GLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACR 328 (610)
T ss_pred eEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHH
Confidence 8899999999999887655443211 111222110 0111233445555555543 356688
Q ss_pred eeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccC
Q 008735 149 AIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSAS 228 (555)
Q Consensus 149 ~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 228 (555)
++.+||| |+|+|++|..++..++..+. ...|.+++|||
T Consensus 329 yL~lDEA--------------------------------------DRmiDmGFEddir~iF~~FK----~QRQTLLFSAT 366 (610)
T KOG0341|consen 329 YLTLDEA--------------------------------------DRMIDMGFEDDIRTIFSFFK----GQRQTLLFSAT 366 (610)
T ss_pred HhhhhhH--------------------------------------HHHhhccchhhHHHHHHHHh----hhhheeeeecc
Confidence 9999999 79999999999999999988 55699999999
Q ss_pred CCH--HHHHhhhCCCCeEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHh
Q 008735 229 LDA--RGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERL 306 (555)
Q Consensus 229 ~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~ 306 (555)
++. ..|++---..|+...-|+.-..+.........-..+..+..++.+... ...++|||+..+.++..+.++|--.
T Consensus 367 MP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQK-T~PpVLIFaEkK~DVD~IhEYLLlK- 444 (610)
T KOG0341|consen 367 MPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQK-TSPPVLIFAEKKADVDDIHEYLLLK- 444 (610)
T ss_pred ccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhcc-CCCceEEEeccccChHHHHHHHHHc-
Confidence 964 345433223344433344322221111111111112333344444433 3667999999999999999988654
Q ss_pred hcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCcccccee
Q 008735 307 LQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVV 386 (555)
Q Consensus 307 ~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~ 386 (555)
++.+..+|||-++++|...++.|+.|+.+|+||||+++.|+|+|++.+||| || .
T Consensus 445 --------GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN--------yD----------M 498 (610)
T KOG0341|consen 445 --------GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN--------YD----------M 498 (610)
T ss_pred --------cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc--------CC----------C
Confidence 899999999999999999999999999999999999999999999999999 99 7
Q ss_pred ecCHHhHHHHhcccCCCC-CCEEEEccChhhH
Q 008735 387 PISKAQALQRSGRAGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 387 p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 417 (555)
|-...+|+||+||+||.| .|.+.+|.++...
T Consensus 499 P~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 499 PEEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred hHHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 999999999999999999 8999999877643
No 54
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-35 Score=270.49 Aligned_cols=313 Identities=17% Similarity=0.214 Sum_probs=231.7
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHH-
Q 008735 31 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRV- 107 (555)
Q Consensus 31 ~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~- 107 (555)
+..-+-+.++-.|.|+|++.++....|++++.-|.+|+||| +++|.+-.... .....+.+++.|+|++|.|..+..
T Consensus 96 LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~-~~~~IQ~~ilVPtrelALQtSqvc~ 174 (459)
T KOG0326|consen 96 LLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP-KKNVIQAIILVPTRELALQTSQVCK 174 (459)
T ss_pred HHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc-cccceeEEEEeecchhhHHHHHHHH
Confidence 34444567888999999999999999999999999999999 66666543332 223457889999999998776654
Q ss_pred --HHHhCCccCCEEEEEEecCC----------CCCchhhHHHhhcC--CCCCCCceeEeecccccccchhHHHHHHHHHH
Q 008735 108 --AEESGVELGQRVGYSIRFDD----------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 173 (555)
Q Consensus 108 --~~~~~~~~~~~vg~~~~~~~----------~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~ 173 (555)
++-.+..+...+|...--+. .+.++.++..+... ..++.+..+|+|||
T Consensus 175 ~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA------------------ 236 (459)
T KOG0326|consen 175 ELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA------------------ 236 (459)
T ss_pred HHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh------------------
Confidence 33333333333332111111 12344555555443 24788999999999
Q ss_pred HhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCC--HHHHH-hhhCCCCeEEeCCcc
Q 008735 174 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFS-EYFGCAKAVHVQGRQ 250 (555)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~--~~~~~-~~~~~~~~~~~~~~~ 250 (555)
|.+++..|.+.++.++..++ .+.|+++.|||.+ ...|. +++.++-.+..-...
T Consensus 237 --------------------DKlLs~~F~~~~e~li~~lP----~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL 292 (459)
T KOG0326|consen 237 --------------------DKLLSVDFQPIVEKLISFLP----KERQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL 292 (459)
T ss_pred --------------------hhhhchhhhhHHHHHHHhCC----ccceeeEEecccchhHHHHHHHhccCcceeehhhhh
Confidence 68999999999999999998 6789999999994 44454 555543333322211
Q ss_pred --ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHH
Q 008735 251 --FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE 328 (555)
Q Consensus 251 --~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~ 328 (555)
..+..+|-...+. ..+..+-.+.....-.+.+||||+.+.+|-+|+.+.+. ++.++.+|+.|.++
T Consensus 293 tl~GvtQyYafV~e~----qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITel---------GyscyyiHakM~Q~ 359 (459)
T KOG0326|consen 293 TLKGVTQYYAFVEER----QKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL---------GYSCYYIHAKMAQE 359 (459)
T ss_pred hhcchhhheeeechh----hhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhc---------cchhhHHHHHHHHh
Confidence 1223333222222 22222223333334567999999999999999999887 99999999999999
Q ss_pred HHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCE
Q 008735 329 QQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK 407 (555)
Q Consensus 329 ~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~ 407 (555)
.|..+|..|++|..+.+||||.+-+|||+++|++||| || .|.+.++|+||+||+||.| .|.
T Consensus 360 hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN--------FD----------fpk~aEtYLHRIGRsGRFGhlGl 421 (459)
T KOG0326|consen 360 HRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN--------FD----------FPKNAETYLHRIGRSGRFGHLGL 421 (459)
T ss_pred hhhhhhhhhhccccceeeehhhhhcccccceeeEEEe--------cC----------CCCCHHHHHHHccCCccCCCcce
Confidence 9999999999999999999999999999999999999 88 7999999999999999999 999
Q ss_pred EEEccChhhH
Q 008735 408 CFRLYPENEF 417 (555)
Q Consensus 408 ~~~l~~~~~~ 417 (555)
++.|.+-++-
T Consensus 422 AInLityedr 431 (459)
T KOG0326|consen 422 AINLITYEDR 431 (459)
T ss_pred EEEEEehhhh
Confidence 9999875543
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.5e-32 Score=300.30 Aligned_cols=305 Identities=18% Similarity=0.199 Sum_probs=206.6
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhcC------CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHH
Q 008735 30 RRQKILQQRKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTV 103 (555)
Q Consensus 30 ~~~~~~~~~~~l~~~~~Q~~~i~~i~~~------~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~ 103 (555)
...+.+.....+.++++|+++++.+.++ .+.+++||||||||..+...++... ..+.+++++.|+++++.|.
T Consensus 249 ~~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 249 ELLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQH 326 (681)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHH
Confidence 3444555667778999999999999887 4899999999999955544444332 2366899999999999999
Q ss_pred HHHHHHHhCCccCCEEEEEEecCCCCCchhhHH--------------Hhhc-CCCCCCCceeEeecccccccchhHHHHH
Q 008735 104 AKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGL 168 (555)
Q Consensus 104 ~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~--------------~~~~-~~~l~~~~~iIiDE~He~~~~~d~ll~~ 168 (555)
++.+.+.+.. .+..++...+..........+. ..+. ...+.+++++||||+|..+.....
T Consensus 327 ~~~l~~l~~~-~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~~qr~---- 401 (681)
T PRK10917 327 YENLKKLLEP-LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVEQRL---- 401 (681)
T ss_pred HHHHHHHHhh-cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhHHHHH----
Confidence 9998876642 3344544333211000000000 1112 224789999999999964332111
Q ss_pred HHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHH-hhhCCCCeEEeC
Q 008735 169 LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS-EYFGCAKAVHVQ 247 (555)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~-~~~~~~~~~~~~ 247 (555)
.+... ..+.++++||||+.+..++ ..++...+..+.
T Consensus 402 ---~l~~~----------------------------------------~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~ 438 (681)
T PRK10917 402 ---ALREK----------------------------------------GENPHVLVMTATPIPRTLAMTAYGDLDVSVID 438 (681)
T ss_pred ---HHHhc----------------------------------------CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEe
Confidence 00000 0457899999999766654 334443333332
Q ss_pred Cc---cccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCH--------HHHHHHHHHHHHHhhcCCCCCCCe
Q 008735 248 GR---QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ--------EEIESVERLVQERLLQLPEASRKL 316 (555)
Q Consensus 248 ~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~--------~~~~~l~~~L~~~~~~~~~~~~~~ 316 (555)
.. ..++...+... +..+..+..+.... ..+.+++||||.. ..++++++.|.+.+. ++
T Consensus 439 ~~p~~r~~i~~~~~~~---~~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~-------~~ 506 (681)
T PRK10917 439 ELPPGRKPITTVVIPD---SRRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFP-------EL 506 (681)
T ss_pred cCCCCCCCcEEEEeCc---ccHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCC-------CC
Confidence 21 22344443322 22233333333332 2367899999964 455666777766532 47
Q ss_pred EEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHH
Q 008735 317 VTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQR 396 (555)
Q Consensus 317 ~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr 396 (555)
.+..+||+|+.++|.++++.|++|+.+|||||+++++|||+|++++||+ ||+. ..+.+++.||
T Consensus 507 ~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi--------~~~~---------r~gls~lhQ~ 569 (681)
T PRK10917 507 RVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI--------ENAE---------RFGLAQLHQL 569 (681)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE--------eCCC---------CCCHHHHHHH
Confidence 7999999999999999999999999999999999999999999999998 7742 1246789999
Q ss_pred hcccCCCC-CCEEEEccC
Q 008735 397 SGRAGREG-PGKCFRLYP 413 (555)
Q Consensus 397 ~GRaGR~~-~G~~~~l~~ 413 (555)
+||+||.| +|.||.+++
T Consensus 570 ~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 570 RGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred hhcccCCCCceEEEEEEC
Confidence 99999999 999999995
No 56
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.5e-32 Score=308.56 Aligned_cols=306 Identities=18% Similarity=0.197 Sum_probs=205.9
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhcC------CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHH
Q 008735 29 SRRQKILQQRKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVT 102 (555)
Q Consensus 29 ~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~------~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~ 102 (555)
..+.........+.+++.|+++++.+..+ .+++++||||||||.++..+++... ..+.+++++.|++.++.|
T Consensus 587 ~~~~~~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~--~~g~qvlvLvPT~eLA~Q 664 (1147)
T PRK10689 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV--ENHKQVAVLVPTTLLAQQ 664 (1147)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHH
Confidence 34545556666778999999999999987 8999999999999955443333221 236789999999999999
Q ss_pred HHHHHHHHhCCccCCEEEEEEecCCCCCchhhHH--------------Hhhc-CCCCCCCceeEeecccccccchhHHHH
Q 008735 103 VAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLG 167 (555)
Q Consensus 103 ~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~--------------~~~~-~~~l~~~~~iIiDE~He~~~~~d~ll~ 167 (555)
+++.+.+.+.. .+..++...++.........+. .++. +..+.+++++||||+|+.+....
T Consensus 665 ~~~~f~~~~~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrfG~~~~---- 739 (1147)
T PRK10689 665 HYDNFRDRFAN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHK---- 739 (1147)
T ss_pred HHHHHHHhhcc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhcchhHH----
Confidence 99988776542 2233333222211100000000 1121 22367899999999996433211
Q ss_pred HHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHH---hhhCCCCeE
Q 008735 168 LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS---EYFGCAKAV 244 (555)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~---~~~~~~~~~ 244 (555)
.. ++.+. .+.++++||||+.++.+. ..+.+...+
T Consensus 740 ---e~------------------------------------lk~l~----~~~qvLl~SATpiprtl~l~~~gl~d~~~I 776 (1147)
T PRK10689 740 ---ER------------------------------------IKAMR----ADVDILTLTATPIPRTLNMAMSGMRDLSII 776 (1147)
T ss_pred ---HH------------------------------------HHhcC----CCCcEEEEcCCCCHHHHHHHHhhCCCcEEE
Confidence 11 11111 678999999998665443 222333334
Q ss_pred EeCCc-cccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecC
Q 008735 245 HVQGR-QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS 323 (555)
Q Consensus 245 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~ 323 (555)
..+.. ..+++......... .....++.... .+++++||||+++.++.+++.|.+.++ +..+..+||
T Consensus 777 ~~~p~~r~~v~~~~~~~~~~----~~k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p-------~~~v~~lHG 843 (1147)
T PRK10689 777 ATPPARRLAVKTFVREYDSL----VVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVP-------EARIAIGHG 843 (1147)
T ss_pred ecCCCCCCCceEEEEecCcH----HHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCC-------CCcEEEEeC
Confidence 33221 13344333322111 11112222221 367899999999999999999987643 567888999
Q ss_pred CCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCC
Q 008735 324 SLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE 403 (555)
Q Consensus 324 ~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~ 403 (555)
+|++++|.+++.+|++|+.+|||||+++++|||+|++++||- +++. ..+.++|+||+||+||.
T Consensus 844 ~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi--------~~ad---------~fglaq~~Qr~GRvGR~ 906 (1147)
T PRK10689 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERAD---------HFGLAQLHQLRGRVGRS 906 (1147)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE--------ecCC---------CCCHHHHHHHhhccCCC
Confidence 999999999999999999999999999999999999999993 2211 23446799999999999
Q ss_pred C-CCEEEEccCh
Q 008735 404 G-PGKCFRLYPE 414 (555)
Q Consensus 404 ~-~G~~~~l~~~ 414 (555)
| .|.||.+++.
T Consensus 907 g~~g~a~ll~~~ 918 (1147)
T PRK10689 907 HHQAYAWLLTPH 918 (1147)
T ss_pred CCceEEEEEeCC
Confidence 9 9999999853
No 57
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=281.26 Aligned_cols=325 Identities=20% Similarity=0.250 Sum_probs=232.5
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhcccc----CCCcEEEEeCccHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFC----RDGKLIGVTQPRRVAAV 101 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~~----~~~~~i~~~~P~r~l~~ 101 (555)
+.++.+.+...++-.+++.|.++++.+..+++++.++||||||| +.+|.+....... ..|-+++++.|++.++.
T Consensus 144 ~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~ 223 (593)
T KOG0344|consen 144 NKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAA 223 (593)
T ss_pred cHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHH
Confidence 44567778888999999999999999999999999999999999 6677655443333 34678999999999999
Q ss_pred HHHHHHHHHhCC--ccCCEE--EEEE------------ecCCCCCchhhHHHhhcCC----CCCCCceeEeecccccccc
Q 008735 102 TVAKRVAEESGV--ELGQRV--GYSI------------RFDDRTSTSTRIKEALLDP----YLSRYSAIIVDEAHERTVH 161 (555)
Q Consensus 102 ~~~~~~~~~~~~--~~~~~v--g~~~------------~~~~~~~~~~~i~~~~~~~----~l~~~~~iIiDE~He~~~~ 161 (555)
|++....++... .-.... .|.. .++...+++.++...+..+ .++++.++|+||+
T Consensus 224 Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEa------ 297 (593)
T KOG0344|consen 224 QIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEA------ 297 (593)
T ss_pred HHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechH------
Confidence 999887776521 100001 1110 0111223333444444432 5788999999999
Q ss_pred hhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhcc-CCCCcccchhhhccccCCCCceEEEeccCCC--HHHHHhhh
Q 008735 162 TDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDR-GNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFSEYF 238 (555)
Q Consensus 162 ~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~-~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~--~~~~~~~~ 238 (555)
|++++. .|..+.-.+++.+.. +++++-++|||.+ .+++++..
T Consensus 298 --------------------------------D~lfe~~~f~~Qla~I~sac~s---~~i~~a~FSat~~~~VEE~~~~i 342 (593)
T KOG0344|consen 298 --------------------------------DLLFEPEFFVEQLADIYSACQS---PDIRVALFSATISVYVEEWAELI 342 (593)
T ss_pred --------------------------------HhhhChhhHHHHHHHHHHHhcC---cchhhhhhhccccHHHHHHHHHh
Confidence 455555 555555556666654 8889999999994 45555332
Q ss_pred -CCCCeEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeE
Q 008735 239 -GCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLV 317 (555)
Q Consensus 239 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~ 317 (555)
.+...+.+..+.......-+...-.......+..+.+.....-+.++|||+.+.+.+.++...|... .++.
T Consensus 343 ~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~--------~~i~ 414 (593)
T KOG0344|consen 343 KSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIY--------DNIN 414 (593)
T ss_pred hccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhc--------cCcc
Confidence 2233333333322111111111111111222333444444455788999999999999999888522 3888
Q ss_pred EEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHh
Q 008735 318 TVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRS 397 (555)
Q Consensus 318 v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~ 397 (555)
+..+||..++.+|.++++.|+.|+++|++||+++++|+|+-+++.||| || .|.+..+|+||+
T Consensus 415 v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn--------yD----------~p~s~~syihrI 476 (593)
T KOG0344|consen 415 VDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN--------YD----------FPQSDLSYIHRI 476 (593)
T ss_pred eeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe--------cC----------CCchhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999 99 799999999999
Q ss_pred cccCCCC-CCEEEEccChhhHhc
Q 008735 398 GRAGREG-PGKCFRLYPENEFDK 419 (555)
Q Consensus 398 GRaGR~~-~G~~~~l~~~~~~~~ 419 (555)
||+||+| .|++|++|++++...
T Consensus 477 GRtgRag~~g~Aitfytd~d~~~ 499 (593)
T KOG0344|consen 477 GRTGRAGRSGKAITFYTDQDMPR 499 (593)
T ss_pred hccCCCCCCcceEEEeccccchh
Confidence 9999999 999999999976654
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=5.1e-33 Score=315.42 Aligned_cols=289 Identities=21% Similarity=0.240 Sum_probs=190.3
Q ss_pred EEcCCCCchhhHHHHHHHhcccc-----------CCCcEEEEeCccHHHHHHHHHHHHHHh----------C-CccCCEE
Q 008735 62 IVGETGSGKTTQLPQFLFHAGFC-----------RDGKLIGVTQPRRVAAVTVAKRVAEES----------G-VELGQRV 119 (555)
Q Consensus 62 i~apTGsGKT~~l~~~i~~~~~~-----------~~~~~i~~~~P~r~l~~~~~~~~~~~~----------~-~~~~~~v 119 (555)
|++|||||||..+.+.++..... .++.+++|+.|+++|+.++.+++.... + ...+..+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999995555544333221 135689999999999999998765311 1 1123344
Q ss_pred EEEEecCC---------------CCCchhhHHHhhcC---CCCCCCceeEeecccccccchhHHHHHHHHHHHhhccccc
Q 008735 120 GYSIRFDD---------------RTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 181 (555)
Q Consensus 120 g~~~~~~~---------------~~~~~~~i~~~~~~---~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~ 181 (555)
+.... +. .++++..+..++.. ..++++++|||||+|
T Consensus 81 ~vrtG-Dt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H------------------------- 134 (1490)
T PRK09751 81 GIRTG-DTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVH------------------------- 134 (1490)
T ss_pred EEEEC-CCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHH-------------------------
Confidence 42221 11 11222333333322 358899999999998
Q ss_pred CCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhCCC-CeEEeCC---ccccceEE
Q 008735 182 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCA-KAVHVQG---RQFPVEIL 256 (555)
Q Consensus 182 ~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~-~~~~~~~---~~~~v~~~ 256 (555)
.+++..+|.++...++++......+.|+|++|||+ |.+++++|++.. ++..+.. +..+++..
T Consensus 135 -------------~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~ 201 (1490)
T PRK09751 135 -------------AVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIV 201 (1490)
T ss_pred -------------HhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEE
Confidence 45555566666666666544333678999999999 888999999754 3322221 22223322
Q ss_pred EcCCCCCC-------------------hHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCC-------
Q 008735 257 YTLYPEPD-------------------YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP------- 310 (555)
Q Consensus 257 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~------- 310 (555)
.......+ ........++... ...+++||||||++.|+.++..|++...+..
T Consensus 202 vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~ 279 (1490)
T PRK09751 202 VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIA 279 (1490)
T ss_pred EecCchhhccccccccccccchhhhhhhhHHHHHHHHHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhcccccccc
Confidence 21111000 0001111222222 2357899999999999999999987532100
Q ss_pred -----------------CCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCccccee
Q 008735 311 -----------------EASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARL 373 (555)
Q Consensus 311 -----------------~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~ 373 (555)
.......+..|||+|++++|..+++.|++|++++||||+++++|||+++|++||+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq-------- 351 (1490)
T PRK09751 280 VDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ-------- 351 (1490)
T ss_pred chhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE--------
Confidence 0001234778999999999999999999999999999999999999999999999
Q ss_pred ecCCCCccccceeecCHHhHHHHhcccCCCC--CCEEE
Q 008735 374 YDPVKGMESLLVVPISKAQALQRSGRAGREG--PGKCF 409 (555)
Q Consensus 374 yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~--~G~~~ 409 (555)
|+ .|.|.++|+||+|||||.. .++++
T Consensus 352 ~g----------sP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 352 VA----------TPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred eC----------CCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 66 6999999999999999974 34444
No 59
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=8.3e-32 Score=292.63 Aligned_cols=305 Identities=18% Similarity=0.209 Sum_probs=200.5
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhcC------CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHH
Q 008735 31 RQKILQQRKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVA 104 (555)
Q Consensus 31 ~~~~~~~~~~l~~~~~Q~~~i~~i~~~------~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~ 104 (555)
..+++. ...+.+++.|+++++.+..+ .+.+++||||||||..+...++... ..+.+++++.|+++++.|.+
T Consensus 225 ~~~~~~-~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~--~~g~qvlilaPT~~LA~Q~~ 301 (630)
T TIGR00643 225 LTKFLA-SLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAI--EAGYQVALMAPTEILAEQHY 301 (630)
T ss_pred HHHHHH-hCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEECCHHHHHHHHH
Confidence 444444 45568999999999999876 2689999999999965544443332 13568999999999999999
Q ss_pred HHHHHHhCCccCCEEEEEEecCCCCCchhhHH---------------HhhcCCCCCCCceeEeecccccccchhHHHHHH
Q 008735 105 KRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLL 169 (555)
Q Consensus 105 ~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~---------------~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l 169 (555)
+.+.+.+.. .+..++................ .+.....+.+++++||||+|..+...... +
T Consensus 302 ~~~~~l~~~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~~qr~~---l 377 (630)
T TIGR00643 302 NSLRNLLAP-LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGVEQRKK---L 377 (630)
T ss_pred HHHHHHhcc-cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccHHHHHH---H
Confidence 998876642 2334443322111100000000 11122346789999999999644322111 1
Q ss_pred HHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHH-hhhCCCCeEEe--
Q 008735 170 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS-EYFGCAKAVHV-- 246 (555)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~-~~~~~~~~~~~-- 246 (555)
.. .. .. ....++++||||+.+..++ ..++......+
T Consensus 378 ~~---~~------------------------~~--------------~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~ 416 (630)
T TIGR00643 378 RE---KG------------------------QG--------------GFTPHVLVMSATPIPRTLALTVYGDLDTSIIDE 416 (630)
T ss_pred HH---hc------------------------cc--------------CCCCCEEEEeCCCCcHHHHHHhcCCcceeeecc
Confidence 10 00 00 0256899999998665544 22333222222
Q ss_pred -CCccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCH--------HHHHHHHHHHHHHhhcCCCCCCCeE
Q 008735 247 -QGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ--------EEIESVERLVQERLLQLPEASRKLV 317 (555)
Q Consensus 247 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~--------~~~~~l~~~L~~~~~~~~~~~~~~~ 317 (555)
+....++...+... +..+..+..+.... ..+.+++|||+.. ..++.+++.|.+.+ +++.
T Consensus 417 ~p~~r~~i~~~~~~~---~~~~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-------~~~~ 484 (630)
T TIGR00643 417 LPPGRKPITTVLIKH---DEKDIVYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-------PKYN 484 (630)
T ss_pred CCCCCCceEEEEeCc---chHHHHHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhhC-------CCCc
Confidence 12223444443322 12233333333222 2367899999976 44566666666543 2678
Q ss_pred EEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHh
Q 008735 318 TVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRS 397 (555)
Q Consensus 318 v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~ 397 (555)
+..+||+|+.++|.++++.|++|+.+|||||+++++|||+|++++||. ||.. ..+.+++.||+
T Consensus 485 v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi--------~~~~---------r~gls~lhQ~~ 547 (630)
T TIGR00643 485 VGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI--------EDAE---------RFGLSQLHQLR 547 (630)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE--------eCCC---------cCCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998 6632 23567899999
Q ss_pred cccCCCC-CCEEEEcc
Q 008735 398 GRAGREG-PGKCFRLY 412 (555)
Q Consensus 398 GRaGR~~-~G~~~~l~ 412 (555)
|||||.| .|.|+.++
T Consensus 548 GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 548 GRVGRGDHQSYCLLVY 563 (630)
T ss_pred hhcccCCCCcEEEEEE
Confidence 9999999 99999998
No 60
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-33 Score=270.31 Aligned_cols=325 Identities=18% Similarity=0.257 Sum_probs=244.3
Q ss_pred CCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhcc-----ccCCCcEEEE
Q 008735 21 KPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAG-----FCRDGKLIGV 92 (555)
Q Consensus 21 ~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~-----~~~~~~~i~~ 92 (555)
+.|..+. .+++..++.+.++-.|+.+|+.+|+.+.+|++++..|-|||||| |++|++-.... -...+...++
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 6776665 77899999999999999999999999999999999999999999 77776543211 1223667899
Q ss_pred eCccHHHHHHHHHHHHHHh---CCc-----cCCEE-------EEEEecCCCCCchhhHHHhhcC---CCCCCCceeEeec
Q 008735 93 TQPRRVAAVTVAKRVAEES---GVE-----LGQRV-------GYSIRFDDRTSTSTRIKEALLD---PYLSRYSAIIVDE 154 (555)
Q Consensus 93 ~~P~r~l~~~~~~~~~~~~---~~~-----~~~~v-------g~~~~~~~~~~~~~~i~~~~~~---~~l~~~~~iIiDE 154 (555)
+.|++++++|++..+.+.. ... +.... -.....+..+.++.++...+.. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999987654432 211 11000 0011112223444444443332 2367789999999
Q ss_pred ccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC--CHH
Q 008735 155 AHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DAR 232 (555)
Q Consensus 155 ~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~--~~~ 232 (555)
| |.++.+++..++..+.+.++ +..|.++||||+ |..
T Consensus 179 A--------------------------------------DLllsfGYeedlk~l~~~LP----r~~Q~~LmSATl~dDv~ 216 (569)
T KOG0346|consen 179 A--------------------------------------DLLLSFGYEEDLKKLRSHLP----RIYQCFLMSATLSDDVQ 216 (569)
T ss_pred h--------------------------------------hhhhhcccHHHHHHHHHhCC----chhhheeehhhhhhHHH
Confidence 9 79999999999999999998 788999999999 566
Q ss_pred HHHhhhC-CCCeEEeCCcccc----ceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhh
Q 008735 233 GFSEYFG-CAKAVHVQGRQFP----VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLL 307 (555)
Q Consensus 233 ~~~~~~~-~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~ 307 (555)
.+.+.+- ++-++.+.....+ +..++......+... .+-.++++.. -.|++|||+||.+.|.++.-.|+..
T Consensus 217 ~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl-llyallKL~L--I~gKsliFVNtIdr~YrLkLfLeqF-- 291 (569)
T KOG0346|consen 217 ALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL-LLYALLKLRL--IRGKSLIFVNTIDRCYRLKLFLEQF-- 291 (569)
T ss_pred HHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH-HHHHHHHHHH--hcCceEEEEechhhhHHHHHHHHHh--
Confidence 6776664 4444555443333 233344333333222 2222333322 3789999999999999999999887
Q ss_pred cCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecC-----------------------------------ccc
Q 008735 308 QLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-----------------------------------IAE 352 (555)
Q Consensus 308 ~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-----------------------------------~~e 352 (555)
++....+.|.||.+-|..|++.|..|.+.+||||| -.+
T Consensus 292 -------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVs 364 (569)
T KOG0346|consen 292 -------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVS 364 (569)
T ss_pred -------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchh
Confidence 88999999999999999999999999999999999 345
Q ss_pred cccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhhH
Q 008735 353 TSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 353 ~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 417 (555)
+|||+..|.+||| || .|.+..+|+||+||++|.+ +|.+..|+.+.+.
T Consensus 365 RGIDF~~V~~VlN--------FD----------~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~ 412 (569)
T KOG0346|consen 365 RGIDFHHVSNVLN--------FD----------FPETVTSYIHRVGRTARGNNKGTALSFVSPKEE 412 (569)
T ss_pred ccccchheeeeee--------cC----------CCCchHHHHHhccccccCCCCCceEEEecchHH
Confidence 8999999999999 88 7999999999999999999 9999999865544
No 61
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-34 Score=286.97 Aligned_cols=322 Identities=20% Similarity=0.266 Sum_probs=228.4
Q ss_pred ChhHHHHHHHhhcCCCcHHHHHHHHHHHhcC-CeEEEEcCCCCchhhHHHHHHHhc---------c---ccCCC--cEEE
Q 008735 27 SSSRRQKILQQRKSLPIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHA---------G---FCRDG--KLIG 91 (555)
Q Consensus 27 ~~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~-~~~ii~apTGsGKT~~l~~~i~~~---------~---~~~~~--~~i~ 91 (555)
.+..+...+.+.++..|+++|...++.+..| .+++-.|.||||||..+...+.+. . ..... ...+
T Consensus 188 lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~L 267 (731)
T KOG0347|consen 188 LPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIAL 267 (731)
T ss_pred CCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeE
Confidence 3556778899999999999999999999998 799999999999994444444331 1 11122 2489
Q ss_pred EeCccHHHHHHHHHHHHHHh---CCccCCEEEEEE----------ecCCCCCchhhHHHhhcC-----CCCCCCceeEee
Q 008735 92 VTQPRRVAAVTVAKRVAEES---GVELGQRVGYSI----------RFDDRTSTSTRIKEALLD-----PYLSRYSAIIVD 153 (555)
Q Consensus 92 ~~~P~r~l~~~~~~~~~~~~---~~~~~~~vg~~~----------~~~~~~~~~~~i~~~~~~-----~~l~~~~~iIiD 153 (555)
++.|+|+++.|+.+.+.... +..+...+|... +.+..+.++.++.+++.. ..+.+++++|+|
T Consensus 268 V~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlD 347 (731)
T KOG0347|consen 268 VVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLD 347 (731)
T ss_pred EecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEc
Confidence 99999999999988764433 333333333211 122234455555555542 236788999999
Q ss_pred cccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhcc-ccCCCCceEEEeccCCCHH
Q 008735 154 EAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQ-GRKFAPLKLIIMSASLDAR 232 (555)
Q Consensus 154 E~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~-~~~~~~~~ii~~SAT~~~~ 232 (555)
|+ |+|++.++-+.+..+++.+. .+.....|.+.+|||++..
T Consensus 348 Ea--------------------------------------DRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~ 389 (731)
T KOG0347|consen 348 EA--------------------------------------DRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLV 389 (731)
T ss_pred cH--------------------------------------HHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehh
Confidence 99 68888888888888888886 3444677999999998432
Q ss_pred HHHhh---h-CCC-------C------eEEeCCccccceEEEcCCCCCChHHHHHHHHHH-----------HHhcCCCCc
Q 008735 233 GFSEY---F-GCA-------K------AVHVQGRQFPVEILYTLYPEPDYLDATLITIFQ-----------VHLDEAPGD 284 (555)
Q Consensus 233 ~~~~~---~-~~~-------~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 284 (555)
..... - +.. + -+.+.+.+ ......+...-.....+..+. +....-+|+
T Consensus 390 ~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kp----kiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGr 465 (731)
T KOG0347|consen 390 LQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKP----KIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGR 465 (731)
T ss_pred hcChhHHhhhccchhhhhhHHHHHHHHHhCccCCC----eeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCc
Confidence 21100 0 000 0 01111111 000001111111111111111 122334899
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEE
Q 008735 285 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 364 (555)
Q Consensus 285 iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VI 364 (555)
+|||||+...+..++-+|... ++..+++|+.|.+.+|.+.+++|++..-.||||||+|++|+|||+|.+||
T Consensus 466 TlVF~NsId~vKRLt~~L~~L---------~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVI 536 (731)
T KOG0347|consen 466 TLVFCNSIDCVKRLTVLLNNL---------DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVI 536 (731)
T ss_pred eEEEechHHHHHHHHHHHhhc---------CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEE
Confidence 999999999999999999876 88899999999999999999999999999999999999999999999999
Q ss_pred eCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhhH
Q 008735 365 DPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 365 d~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 417 (555)
+ |. .|-+...|+||.||+.|++ .|....|+.+.+.
T Consensus 537 H--------Yq----------VPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 537 H--------YQ----------VPRTSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred E--------ee----------cCCccceeEecccccccccCCCeEEEEeChHHh
Confidence 9 87 7899999999999999999 9999999977654
No 62
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.8e-31 Score=285.86 Aligned_cols=298 Identities=16% Similarity=0.170 Sum_probs=181.0
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhcCC-eEEEEcCCCCchhhHHHHHHHhccccC-CCcEEEEeCccHHHHHHHHHHHHHHh
Q 008735 34 ILQQRKSLPIASVEKRLVEEVRKND-ILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAEES 111 (555)
Q Consensus 34 ~~~~~~~l~~~~~Q~~~i~~i~~~~-~~ii~apTGsGKT~~l~~~i~~~~~~~-~~~~i~~~~P~r~l~~~~~~~~~~~~ 111 (555)
+......+.|+++|+++++.+..|+ ++++.+|||||||..+..+++...... ...+++++.|+|+++.|+++.+.+..
T Consensus 7 ff~~~~G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~ 86 (844)
T TIGR02621 7 WYQGLHGYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIG 86 (844)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHH
Confidence 3444334559999999999999998 577789999999965443333222111 23467778899999999988765543
Q ss_pred CCc----------------------cCCEEEEEEecCCCCCc------------hhhHHHhhcCC---------------
Q 008735 112 GVE----------------------LGQRVGYSIRFDDRTST------------STRIKEALLDP--------------- 142 (555)
Q Consensus 112 ~~~----------------------~~~~vg~~~~~~~~~~~------------~~~i~~~~~~~--------------- 142 (555)
... ....+....+....... .| +..+....
T Consensus 87 k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT-~D~i~sr~L~~gYg~~~~~~pi~ 165 (844)
T TIGR02621 87 ERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGT-VDMIGSRLLFSGYGCGFKSRPLH 165 (844)
T ss_pred HHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEEC-HHHHcCCccccccccccccccch
Confidence 211 01112211221111000 01 11111111
Q ss_pred --CCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCc
Q 008735 143 --YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPL 220 (555)
Q Consensus 143 --~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~ 220 (555)
.+++.+++|+||||......+.+..+++... + . ....+.
T Consensus 166 ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~--r------------------------------------p-~~~rpr 206 (844)
T TIGR02621 166 AGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQ--R------------------------------------P-PDFLPL 206 (844)
T ss_pred hhhhccceEEEEehhhhccccHHHHHHHHHhcc--c------------------------------------C-cccccc
Confidence 1578999999999843332222222222110 0 0 000246
Q ss_pred eEEEeccCCCH--HHHHhhhCCCC-eEEeCCccccc-e-EEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASLDA--RGFSEYFGCAK-AVHVQGRQFPV-E-ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~~~--~~~~~~~~~~~-~~~~~~~~~~v-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
|+++||||++. ..+...+...+ .+.+....... + ..+............+..+..... ..++++||||||++++
T Consensus 207 QtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~A 285 (844)
T TIGR02621 207 RVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHV 285 (844)
T ss_pred eEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEecChHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHH
Confidence 99999999954 34444443222 22222211111 1 122222222223333333333332 3467899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHH-----hhcCcCCC----CC-------cEEEEecCccccccccCC
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM-----RVFAPAAA----GF-------RKVILATNIAETSVTIPG 359 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~-----~i~~~f~~----g~-------~~vlvaT~~~e~Gvdip~ 359 (555)
+.+++.|.+. ++ ..+||+|++.+|. ++++.|++ |. .+|||||+++|+||||+.
T Consensus 286 q~L~~~L~~~---------g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~ 354 (844)
T TIGR02621 286 RKVFAKLPKE---------KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA 354 (844)
T ss_pred HHHHHHHHhc---------CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc
Confidence 9999999864 43 8899999999999 77888876 44 689999999999999987
Q ss_pred eEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC
Q 008735 360 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 404 (555)
Q Consensus 360 v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~ 404 (555)
++||+ ++ .+.++|+||+||+||.|
T Consensus 355 -d~VI~--------d~------------aP~esyIQRiGRtgR~G 378 (844)
T TIGR02621 355 -DHLVC--------DL------------APFESMQQRFGRVNRFG 378 (844)
T ss_pred -ceEEE--------CC------------CCHHHHHHHhcccCCCC
Confidence 67775 33 33589999999999998
No 63
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=6.3e-32 Score=264.80 Aligned_cols=346 Identities=17% Similarity=0.234 Sum_probs=230.2
Q ss_pred HHHhhcCCCcHHHHHHHHHHHh---------cCCeEEEEcCCCCchh--hHHHHHHHhccccCCCcEEEEeCccHHHHHH
Q 008735 34 ILQQRKSLPIASVEKRLVEEVR---------KNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVT 102 (555)
Q Consensus 34 ~~~~~~~l~~~~~Q~~~i~~i~---------~~~~~ii~apTGsGKT--~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~ 102 (555)
++.++..-..+++|..+++.+. ..++++|.|||||||| |.+|...+.....-+.-+++++.|++.++.|
T Consensus 151 ~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~Q 230 (620)
T KOG0350|consen 151 LLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQ 230 (620)
T ss_pred HHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHH
Confidence 3677888888999999999983 2579999999999999 7777776655444445689999999999999
Q ss_pred HHHHHHHHhCCccCCEEEEEEec-------------------CCCCCchhhHHHhhcC---CCCCCCceeEeeccccccc
Q 008735 103 VAKRVAEESGVELGQRVGYSIRF-------------------DDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTV 160 (555)
Q Consensus 103 ~~~~~~~~~~~~~~~~vg~~~~~-------------------~~~~~~~~~i~~~~~~---~~l~~~~~iIiDE~He~~~ 160 (555)
+++.+..... ..|..|+..... +..++++.++...+.+ -.|++++++|||||+...
T Consensus 231 V~~~f~~~~~-~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll- 308 (620)
T KOG0350|consen 231 VYDTFKRLNS-GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLL- 308 (620)
T ss_pred HHHHHHHhcc-CCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHH-
Confidence 9998876654 233334322111 1223344444444442 237889999999997411
Q ss_pred chhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccc---hhhhccccCCCCceEEEeccCC--CHHHHH
Q 008735 161 HTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGIN---TLKQCQGRKFAPLKLIIMSASL--DARGFS 235 (555)
Q Consensus 161 ~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~---~l~~~~~~~~~~~~ii~~SAT~--~~~~~~ 235 (555)
-..+-.++-.+.. ++....+-...|.++..-+...... ++..+ ...+++...+.+|||+ ++..+.
T Consensus 309 -~qsfQ~Wl~~v~~--------~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~-~~~~~~l~kL~~satLsqdP~Kl~ 378 (620)
T KOG0350|consen 309 -DQSFQEWLDTVMS--------LCKTMKRVACLDNIIRQRQAPQPTVLSELLTKL-GKLYPPLWKLVFSATLSQDPSKLK 378 (620)
T ss_pred -HHHHHHHHHHHHH--------HhCCchhhcChhhhhhhcccCCchhhHHHHhhc-CCcCchhHhhhcchhhhcChHHHh
Confidence 0011111111111 2223333334456666555333222 22221 2223677789999999 788887
Q ss_pred hhhCCCC-eEEeCCc---cccceEE---EcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhc
Q 008735 236 EYFGCAK-AVHVQGR---QFPVEIL---YTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQ 308 (555)
Q Consensus 236 ~~~~~~~-~~~~~~~---~~~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~ 308 (555)
++--..| .+.+.+. .|.+... +........... .+........-.++|+|+++...+.+++..|+=.+.+
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl---~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~ 455 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPL---AVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS 455 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeecccccchH---hHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc
Confidence 7644434 4444421 1111100 000011111111 1222222333567999999999999999999844332
Q ss_pred CCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeec
Q 008735 309 LPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPI 388 (555)
Q Consensus 309 ~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~ 388 (555)
....+-.+.|++..+.|.+.++.|..|.+++|||||++++|+|+.+|++||| || .|.
T Consensus 456 -----~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Yd----------~P~ 512 (620)
T KOG0350|consen 456 -----DNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------YD----------PPA 512 (620)
T ss_pred -----ccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------cC----------CCc
Confidence 2556667899999999999999999999999999999999999999999999 99 699
Q ss_pred CHHhHHHHhcccCCCC-CCEEEEccChhhH
Q 008735 389 SKAQALQRSGRAGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 389 s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 417 (555)
+..+|+||+||+||+| .|.||.+.++.+.
T Consensus 513 ~~ktyVHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 513 SDKTYVHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred hhhHHHHhhcccccccCCceEEEeeccccc
Confidence 9999999999999999 9999999976643
No 64
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=2.9e-31 Score=283.11 Aligned_cols=438 Identities=16% Similarity=0.163 Sum_probs=290.1
Q ss_pred CcHHHHHHHHHHHhcC-CeEEEEcCCCCchhhHHHHHHHhccc---c------CCCcEEEEeCccHHHHHHHHHHHHHHh
Q 008735 42 PIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGF---C------RDGKLIGVTQPRRVAAVTVAKRVAEES 111 (555)
Q Consensus 42 ~~~~~Q~~~i~~i~~~-~~~ii~apTGsGKT~~l~~~i~~~~~---~------~~~~~i~~~~P~r~l~~~~~~~~~~~~ 111 (555)
.+..+|..+.++...+ .++++|||||+|||-.+.+-+++..- . ....+++++.|.+.|++.+...+++.+
T Consensus 309 sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRl 388 (1674)
T KOG0951|consen 309 SLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRL 388 (1674)
T ss_pred hhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhc
Confidence 3678899999887654 69999999999999554444433211 1 122379999999999999888776654
Q ss_pred CCccCCEEEEEEecCC------------CCCchhhHHHhhcC----CCCCCCceeEeecccccccchhHHHHHHHHHHHh
Q 008735 112 GVELGQRVGYSIRFDD------------RTSTSTRIKEALLD----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 175 (555)
Q Consensus 112 ~~~~~~~vg~~~~~~~------------~~~~~~~i~~~~~~----~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~ 175 (555)
. ..|..|+=..+ +. .++++++...+..+ ...+.++++||||+|
T Consensus 389 a-~~GI~V~ElTg-D~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH------------------- 447 (1674)
T KOG0951|consen 389 A-PLGITVLELTG-DSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH------------------- 447 (1674)
T ss_pred c-ccCcEEEEecc-cccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh-------------------
Confidence 3 33344432221 11 11222322222222 335568999999999
Q ss_pred hcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccC---CCCceEEEeccCC-CHHHHHhhhCCCC--eEEe--C
Q 008735 176 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRK---FAPLKLIIMSASL-DARGFSEYFGCAK--AVHV--Q 247 (555)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~---~~~~~ii~~SAT~-~~~~~~~~~~~~~--~~~~--~ 247 (555)
|+...+|+..++++.+...+. ...++++++|||+ |.++.+.|++..+ .+.. .
T Consensus 448 --------------------LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~s 507 (1674)
T KOG0951|consen 448 --------------------LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSS 507 (1674)
T ss_pred --------------------hcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcc
Confidence 677778888887777764332 2578999999999 8899998887554 3333 4
Q ss_pred CccccceEEEcCCCCCChHHH---HHHHHH-HHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcC--------------
Q 008735 248 GRQFPVEILYTLYPEPDYLDA---TLITIF-QVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL-------------- 309 (555)
Q Consensus 248 ~~~~~v~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~-------------- 309 (555)
-|+.|++..|......+.... +-+.+. ++......+++||||.+|+++-+.|+.|++.+.+.
T Consensus 508 yRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~ 587 (1674)
T KOG0951|consen 508 YRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASR 587 (1674)
T ss_pred cCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchh
Confidence 566677777766554443322 112222 22333446899999999999999999999653210
Q ss_pred -----------C---CCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeec
Q 008735 310 -----------P---EASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYD 375 (555)
Q Consensus 310 -----------~---~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd 375 (555)
+ .+...+.++.+|+||+..+|..+++.|.+|.++|+|+|.++++|||+|+-+++|. .+.+||
T Consensus 588 eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik----gtqvy~ 663 (1674)
T KOG0951|consen 588 EILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYD 663 (1674)
T ss_pred hhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec----CccccC
Confidence 0 1234567899999999999999999999999999999999999999999999996 788999
Q ss_pred CCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEcc--ChhhHhc--ccCCC-CCcccccCchHHHHHHhhcCCCC
Q 008735 376 PVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLY--PENEFDK--LEDST-KPEIKRCNLSNVILQLKALGVDD 447 (555)
Q Consensus 376 ~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~--~~~~~~~--~~~~~-~pei~~~~l~~~~l~l~~~~~~~ 447 (555)
|+.|.- .+.++.+.+||.|||||.+ .|..+..- ++-.|.. +.... .++..-..|...+-.-+.+|+..
T Consensus 664 pekg~w----~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~ 739 (1674)
T KOG0951|consen 664 PEKGRW----TELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRS 739 (1674)
T ss_pred cccCcc----ccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhh
Confidence 998854 3789999999999999988 34444333 3333321 22221 12222222222222222333221
Q ss_pred ccC-CcCC-----------------------CCC----cHHHHHHHHHHHHHcCCccCCC-----CCCHHHHhhcccCCC
Q 008735 448 IIG-FDFM-----------------------EKP----SRASIIKSLEQLFLLGALTDDC-----KLSDPVGHQMARLPL 494 (555)
Q Consensus 448 ~~~-~~~~-----------------------~~p----~~~~~~~al~~L~~~g~l~~~~-----~~T~~lG~~~~~~~~ 494 (555)
..+ .+|+ +++ ..+.+++|.-.|.+.|.|.-+. +.|+ +|++.+.+++
T Consensus 740 ~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~te-lg~ias~yyi 818 (1674)
T KOG0951|consen 740 ARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATE-LGRIASSYYI 818 (1674)
T ss_pred HHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchh-hccccceeee
Confidence 111 1111 222 2256788999999999985432 6798 9999999999
Q ss_pred ChHHHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCCh
Q 008735 495 DPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSP 531 (555)
Q Consensus 495 ~~~~~~~l~~~~~~~~~~~~l~i~a~~~~~~~~~~~~ 531 (555)
.-..+...-+...-.|.+. .+...++..+.|..-+
T Consensus 819 ~~~s~~~yn~~L~~~~~~i--~lfrifs~seEfk~~s 853 (1674)
T KOG0951|consen 819 THGSMATYNELLKETMSEI--DLFRIFSKSEEFKYVS 853 (1674)
T ss_pred ecchHHHHHhhhhhhhccc--hhhhhhhhccccccCC
Confidence 9888877777765555554 4555566666564443
No 65
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=1.5e-31 Score=262.15 Aligned_cols=316 Identities=20% Similarity=0.262 Sum_probs=233.2
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhH--HHHHHHh--cc--ccCCCcEEEEeCccHHHHHHH
Q 008735 30 RRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQ--LPQFLFH--AG--FCRDGKLIGVTQPRRVAAVTV 103 (555)
Q Consensus 30 ~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~--l~~~i~~--~~--~~~~~~~i~~~~P~r~l~~~~ 103 (555)
.+....++..+-.+|++|.++++....|++++-+|.||||||.. .|.+... .. ....+...+|+.|+|+++.|+
T Consensus 233 qLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi 312 (731)
T KOG0339|consen 233 QLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQI 312 (731)
T ss_pred HHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHH
Confidence 35566777888899999999999999999999999999999943 3433321 11 123467889999999999998
Q ss_pred HHHHHHHhCCccCCEEEEEEe--------------cCCCCCchhhHHHhhc--CCCCCCCceeEeecccccccchhHHHH
Q 008735 104 AKRVAEESGVELGQRVGYSIR--------------FDDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLG 167 (555)
Q Consensus 104 ~~~~~~~~~~~~~~~vg~~~~--------------~~~~~~~~~~i~~~~~--~~~l~~~~~iIiDE~He~~~~~d~ll~ 167 (555)
...-.++ +...+..+....+ .+..+.++.++..+.. -..+++++++|+||+
T Consensus 313 ~~eaKkf-~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEa------------ 379 (731)
T KOG0339|consen 313 FSEAKKF-GKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEA------------ 379 (731)
T ss_pred HHHHHHh-hhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEech------------
Confidence 8764443 2222222211111 1112334445444433 245889999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC--CHHHHHhhhCCCCeEE
Q 008735 168 LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAKAVH 245 (555)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~--~~~~~~~~~~~~~~~~ 245 (555)
|.|.+++|.+++.+|..++. ++.|.+++|||+ ..+.+++=+...|+-.
T Consensus 380 --------------------------drmfdmGfe~qVrSI~~hir----pdrQtllFsaTf~~kIe~lard~L~dpVrv 429 (731)
T KOG0339|consen 380 --------------------------DRMFDMGFEPQVRSIKQHIR----PDRQTLLFSATFKKKIEKLARDILSDPVRV 429 (731)
T ss_pred --------------------------hhhhccccHHHHHHHHhhcC----CcceEEEeeccchHHHHHHHHHHhcCCeeE
Confidence 79999999999999988888 899999999999 4566664333344443
Q ss_pred eCCcc----ccceEEEcCC-CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 008735 246 VQGRQ----FPVEILYTLY-PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP 320 (555)
Q Consensus 246 ~~~~~----~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~ 320 (555)
+.+.. ..+....... .....+.-++. ++......|++|+|+..+.++++++..|.-. ++.+..
T Consensus 430 Vqg~vgean~dITQ~V~V~~s~~~Kl~wl~~---~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk---------~~~v~l 497 (731)
T KOG0339|consen 430 VQGEVGEANEDITQTVSVCPSEEKKLNWLLR---HLVEFSSEGKVLIFVTKKADAEEIAANLKLK---------GFNVSL 497 (731)
T ss_pred EEeehhccccchhheeeeccCcHHHHHHHHH---HhhhhccCCcEEEEEeccCCHHHHHHHhccc---------cceeee
Confidence 33321 1111111111 11222222222 2223344789999999999999999988765 999999
Q ss_pred ecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhccc
Q 008735 321 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRA 400 (555)
Q Consensus 321 lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRa 400 (555)
+||+|.+.+|.+++.+|+.+...|+||||++++|+|||+++.||+ || ...+...+.||+||+
T Consensus 498 lhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn--------yD----------~ardIdththrigrt 559 (731)
T KOG0339|consen 498 LHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN--------YD----------FARDIDTHTHRIGRT 559 (731)
T ss_pred ecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec--------cc----------ccchhHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999 99 678889999999999
Q ss_pred CCCC-CCEEEEccChhhHh
Q 008735 401 GREG-PGKCFRLYPENEFD 418 (555)
Q Consensus 401 GR~~-~G~~~~l~~~~~~~ 418 (555)
||.| .|.+|.|.++.+-+
T Consensus 560 gRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 560 GRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred ccccccceeeEEechhhHH
Confidence 9999 99999999987765
No 66
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.98 E-value=1.6e-30 Score=257.21 Aligned_cols=304 Identities=18% Similarity=0.202 Sum_probs=205.4
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCE
Q 008735 39 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 118 (555)
Q Consensus 39 ~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~ 118 (555)
..+.++.||..+......+ +++|+.|||=|||+++.+.+.......++ .++++.|++.|+.|.+..+.+.++......
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i 89 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhhe
Confidence 4567889999999888776 89999999999998887777655444445 899999999999999999999888765544
Q ss_pred EEEEEecCCCCCchhhHHHhhc------CC------------CCCCCceeEeecccccccchhHHHHHHHHHHHhhcccc
Q 008735 119 VGYSIRFDDRTSTSTRIKEALL------DP------------YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 180 (555)
Q Consensus 119 vg~~~~~~~~~~~~~~i~~~~~------~~------------~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~ 180 (555)
+. +.+.+....+...|.. .| .+.++.++|+||||.-..+..+ ..+.+..+...
T Consensus 90 ~~----ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAY-v~Va~~y~~~~---- 160 (542)
T COG1111 90 AA----LTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAY-VFVAKEYLRSA---- 160 (542)
T ss_pred ee----ecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchH-HHHHHHHHHhc----
Confidence 43 2223333333332221 11 2567899999999964433222 12222222222
Q ss_pred cCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC--CHHHHHhhhCCCCeEE--eC-Ccc-----
Q 008735 181 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAKAVH--VQ-GRQ----- 250 (555)
Q Consensus 181 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~--~~~~~~~~~~~~~~~~--~~-~~~----- 250 (555)
.++.+++||||+ +.+.+.+...+.-+-+ +. ...
T Consensus 161 -------------------------------------k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~ 203 (542)
T COG1111 161 -------------------------------------KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRP 203 (542)
T ss_pred -------------------------------------cCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHH
Confidence 778999999999 6666665543321111 00 000
Q ss_pred --ccceEEEcCCC------------------------------------------------------CCC----------
Q 008735 251 --FPVEILYTLYP------------------------------------------------------EPD---------- 264 (555)
Q Consensus 251 --~~v~~~~~~~~------------------------------------------------------~~~---------- 264 (555)
..++..+.... ..+
T Consensus 204 Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~ 283 (542)
T COG1111 204 YVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAE 283 (542)
T ss_pred hhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence 00111110000 000
Q ss_pred ---------------------h--------------------------------------------HHHHHHHHHHHHhc
Q 008735 265 ---------------------Y--------------------------------------------LDATLITIFQVHLD 279 (555)
Q Consensus 265 ---------------------~--------------------------------------------~~~~~~~~~~~~~~ 279 (555)
| ++.....+.+....
T Consensus 284 ~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k 363 (542)
T COG1111 284 AIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEK 363 (542)
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhc
Confidence 0 00011111112223
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEE-------ecCCCCHHHHHhhcCcCCCCCcEEEEecCccc
Q 008735 280 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP-------IFSSLPSEQQMRVFAPAAAGFRKVILATNIAE 352 (555)
Q Consensus 280 ~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~-------lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e 352 (555)
....++|||++-|+.++.+.+.|.+... ...+.+ ...||++.+|.++++.|++|+.+|||||+++|
T Consensus 364 ~~~~RvIVFT~yRdTae~i~~~L~~~~~-------~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgE 436 (542)
T COG1111 364 NGDSRVIVFTEYRDTAEEIVNFLKKIGI-------KARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGE 436 (542)
T ss_pred CCCceEEEEehhHhHHHHHHHHHHhcCC-------cceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEccccc
Confidence 3456899999999999999999988632 121111 23589999999999999999999999999999
Q ss_pred cccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChh
Q 008735 353 TSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPEN 415 (555)
Q Consensus 353 ~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~ 415 (555)
.|+|||+++.||- ||| -.|..-++||.||+||...|.+|.|.++.
T Consensus 437 EGLDIp~vDlVif--------YEp----------vpSeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 437 EGLDIPEVDLVIF--------YEP----------VPSEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred ccCCCCcccEEEE--------ecC----------CcHHHHHHHhhCccccCCCCeEEEEEecC
Confidence 9999999999998 884 46778899999999999999999999765
No 67
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=8.4e-31 Score=268.52 Aligned_cols=283 Identities=18% Similarity=0.206 Sum_probs=175.9
Q ss_pred eEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEE------ec-------
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSI------RF------- 125 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~------~~------- 125 (555)
+++|+||||||||.++..+++.......+.+++++.|++.++.++.+++...++..++...|... ..
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 47899999999998877777765433446689999999999999999998887654332222100 00
Q ss_pred ---------------CCCCCchhhHHHhhcCCC--------CCCCceeEeecccccccchh-HHHHHHHHHHHhhccccc
Q 008735 126 ---------------DDRTSTSTRIKEALLDPY--------LSRYSAIIVDEAHERTVHTD-VLLGLLKKVQNARSKSAD 181 (555)
Q Consensus 126 ---------------~~~~~~~~~i~~~~~~~~--------l~~~~~iIiDE~He~~~~~d-~ll~~l~~~~~~~~~~~~ 181 (555)
...+.+...+...+.... .-..+++|+||+|....... .+..+++.. . .
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l-~-~----- 153 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVL-K-D----- 153 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHH-H-H-----
Confidence 000011111111111100 01237899999997554322 222222221 1 1
Q ss_pred CCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCC--cccc---ceEE
Q 008735 182 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQG--RQFP---VEIL 256 (555)
Q Consensus 182 ~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~--~~~~---v~~~ 256 (555)
.+.|+++||||++ +.+.+++.......... ...+ ...+
T Consensus 154 ------------------------------------~~~~~i~~SATlp-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (358)
T TIGR01587 154 ------------------------------------NDVPILLMSATLP-KFLKEYAEKIGYVEFNEPLDLKEERRFERH 196 (358)
T ss_pred ------------------------------------cCCCEEEEecCch-HHHHHHHhcCCCcccccCCCCccccccccc
Confidence 5679999999996 34555543221110000 0000 0000
Q ss_pred -E-cCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHh--
Q 008735 257 -Y-TLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR-- 332 (555)
Q Consensus 257 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~-- 332 (555)
+ ............+..++... ..++++||||+|+++++.+++.|.+... ...+..+||++++.+|.+
T Consensus 197 ~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~~-------~~~~~~~h~~~~~~~r~~~~ 267 (358)
T TIGR01587 197 RFIKIESDKVGEISSLERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENAP-------EEEIMLLHSRFTEKDRAKKE 267 (358)
T ss_pred cceeeccccccCHHHHHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhcC-------CCeEEEEECCCCHHHHHHHH
Confidence 0 00111111112222222222 2367899999999999999999987521 346999999999999976
Q ss_pred --hcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC--C---
Q 008735 333 --VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG--P--- 405 (555)
Q Consensus 333 --i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~--~--- 405 (555)
+++.|++|..+|||||+++++|+|+| +++||+ | +.+..+|+||+||+||.| .
T Consensus 268 ~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~--------~------------~~~~~~~iqr~GR~gR~g~~~~~~ 326 (358)
T TIGR01587 268 AELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT--------E------------LAPIDSLIQRLGRLHRYGRKNGEN 326 (358)
T ss_pred HHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE--------c------------CCCHHHHHHHhccccCCCCCCCCC
Confidence 48899999999999999999999996 677776 3 345789999999999987 2
Q ss_pred CEEEEccChh
Q 008735 406 GKCFRLYPEN 415 (555)
Q Consensus 406 G~~~~l~~~~ 415 (555)
|.+|.++...
T Consensus 327 ~~~~v~~~~~ 336 (358)
T TIGR01587 327 FEVYIITIAP 336 (358)
T ss_pred CeEEEEeecC
Confidence 3677777554
No 68
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.97 E-value=8.2e-31 Score=263.37 Aligned_cols=319 Identities=16% Similarity=0.176 Sum_probs=244.7
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc-CCCcEEEEeCccHHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~-~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
...+...++..++..++++|..+|+.+..+-++||.+..|+|||.++..+..+.... .....++|+.|+|+++.|+...
T Consensus 33 ~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~t 112 (980)
T KOG4284|consen 33 WREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKET 112 (980)
T ss_pred HHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHH
Confidence 344666677778999999999999999999999999999999995444444333222 2355789999999999999988
Q ss_pred HHHHhC----CccCCEEEEEEec---------CCCCCchhhHHHhhcCC--CCCCCceeEeecccccccchhHHHHHHHH
Q 008735 107 VAEESG----VELGQRVGYSIRF---------DDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLLKK 171 (555)
Q Consensus 107 ~~~~~~----~~~~~~vg~~~~~---------~~~~~~~~~i~~~~~~~--~l~~~~~iIiDE~He~~~~~d~ll~~l~~ 171 (555)
+..... ..+...+|..... ...+.++.++..+.... ..+.++++|+|||
T Consensus 113 v~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEA---------------- 176 (980)
T KOG4284|consen 113 VRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEA---------------- 176 (980)
T ss_pred HHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccH----------------
Confidence 766543 2222233311100 01123444555544432 3678999999999
Q ss_pred HHHhhcccccCCCCCCCCCCcchhhhc-cCCCCcccchhhhccccCCCCceEEEeccCCCH---HHHHhhhCCCCeEEeC
Q 008735 172 VQNARSKSADGHSNGNNNNENSDMILD-RGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA---RGFSEYFGCAKAVHVQ 247 (555)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~---~~~~~~~~~~~~~~~~ 247 (555)
|.+++ ..|.+++..+++.++ ...|++++|||.+. +.+++|+.++..+...
T Consensus 177 ----------------------DkL~~t~sfq~~In~ii~slP----~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n 230 (980)
T KOG4284|consen 177 ----------------------DKLMDTESFQDDINIIINSLP----QIRQVAAFSATYPRNLDNLLSKFMRDPALVRFN 230 (980)
T ss_pred ----------------------HhhhchhhHHHHHHHHHHhcc----hhheeeEEeccCchhHHHHHHHHhcccceeecc
Confidence 56777 667788888888887 56799999999953 4678999888777766
Q ss_pred Ccc---ccceEEEcCCCCCC----hHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 008735 248 GRQ---FPVEILYTLYPEPD----YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP 320 (555)
Q Consensus 248 ~~~---~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~ 320 (555)
.+. +.++.++...+..+ ....++..+-++...-+-.+.||||+....|+.++..|... ++.+..
T Consensus 231 ~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss---------G~d~~~ 301 (980)
T KOG4284|consen 231 ADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS---------GLDVTF 301 (980)
T ss_pred cCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc---------CCCeEE
Confidence 543 34455555544433 23445556666666666678999999999999999999876 999999
Q ss_pred ecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhccc
Q 008735 321 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRA 400 (555)
Q Consensus 321 lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRa 400 (555)
+.|.|.+.+|..+++.+++-..+|||+||..++|||-|.|+.||| .| .|.+-.+|.||+|||
T Consensus 302 ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN--------iD----------~p~d~eTY~HRIGRA 363 (980)
T KOG4284|consen 302 ISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN--------ID----------APADEETYFHRIGRA 363 (980)
T ss_pred eccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe--------cC----------CCcchHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999 77 689999999999999
Q ss_pred CCCC-CCEEEEccChh
Q 008735 401 GREG-PGKCFRLYPEN 415 (555)
Q Consensus 401 GR~~-~G~~~~l~~~~ 415 (555)
||.| .|.+++++..+
T Consensus 364 gRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 364 GRFGAHGAAVTLLEDE 379 (980)
T ss_pred ccccccceeEEEeccc
Confidence 9999 89999888543
No 69
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=7.9e-30 Score=280.71 Aligned_cols=327 Identities=24% Similarity=0.245 Sum_probs=224.3
Q ss_pred ChhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHH
Q 008735 27 SSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 27 ~~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
....+.+.+.+++...+|+||.++++.+.+|++++|+.|||||||-.+...+++.....+..+++++.|+++|+.++.++
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAER 134 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHH
Confidence 34445778888899999999999999999999999999999999977777777777666677899999999999999999
Q ss_pred HHHHhCCccCCEEEEEEecCCCCCchhhH-----------------HHhhcCC------CCCCCceeEeecccc-cccch
Q 008735 107 VAEESGVELGQRVGYSIRFDDRTSTSTRI-----------------KEALLDP------YLSRYSAIIVDEAHE-RTVHT 162 (555)
Q Consensus 107 ~~~~~~~~~~~~vg~~~~~~~~~~~~~~i-----------------~~~~~~~------~l~~~~~iIiDE~He-~~~~~ 162 (555)
+.++.....+ .++ ...++..+....+. ..++... .++++++||+||+|- ++...
T Consensus 135 l~~~~~~~~~-~v~-~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~G 212 (851)
T COG1205 135 LRELISDLPG-KVT-FGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQG 212 (851)
T ss_pred HHHHHHhCCC-cce-eeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccch
Confidence 8887664332 222 12334444333331 1111111 267799999999995 22222
Q ss_pred hHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHH-hhhCC
Q 008735 163 DVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFS-EYFGC 240 (555)
Q Consensus 163 d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~-~~~~~ 240 (555)
-.+-.+++++.... +..+.++|+|++|||+ ++.+++ ++++.
T Consensus 213 S~vA~llRRL~~~~-------------------------------------~~~~~~~q~i~~SAT~~np~e~~~~l~~~ 255 (851)
T COG1205 213 SEVALLLRRLLRRL-------------------------------------RRYGSPLQIICTSATLANPGEFAEELFGR 255 (851)
T ss_pred hHHHHHHHHHHHHH-------------------------------------hccCCCceEEEEeccccChHHHHHHhcCC
Confidence 22333333333211 1112678999999999 776665 55543
Q ss_pred CCeEEeCCccccc--eEEEcCCCC---------CChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcC
Q 008735 241 AKAVHVQGRQFPV--EILYTLYPE---------PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL 309 (555)
Q Consensus 241 ~~~~~~~~~~~~v--~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~ 309 (555)
.-...+.+...+- .......+. .+... ....+..... ..+-++|||+.+++.++.+.......+...
T Consensus 256 ~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~-~~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~ 333 (851)
T COG1205 256 DFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALA-ELATLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVRE 333 (851)
T ss_pred cceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHH-HHHHHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHHhhc
Confidence 2222144333332 223222221 01111 1122222211 236679999999999999985555554433
Q ss_pred CCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeec-
Q 008735 310 PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPI- 388 (555)
Q Consensus 310 ~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~- 388 (555)
. ......+..++|++..++|.+++..|+.|+..++++|++++.|||+.+++.||..|+ |.
T Consensus 334 ~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~------------------P~~ 394 (851)
T COG1205 334 G-GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGY------------------PGV 394 (851)
T ss_pred c-hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCC------------------CCc
Confidence 3 233467899999999999999999999999999999999999999999999998774 66
Q ss_pred CHHhHHHHhcccCCCC-CCEEEEccC
Q 008735 389 SKAQALQRSGRAGREG-PGKCFRLYP 413 (555)
Q Consensus 389 s~~~~~Qr~GRaGR~~-~G~~~~l~~ 413 (555)
+..++.||+|||||.+ .+..+..+.
T Consensus 395 s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 395 SVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred hHHHHHHhhhhccCCCCCceEEEEeC
Confidence 8899999999999998 555554443
No 70
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.7e-30 Score=274.16 Aligned_cols=317 Identities=20% Similarity=0.273 Sum_probs=234.9
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhccc----cCCCcEEEEeCccHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF----CRDGKLIGVTQPRRVAAV 101 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~----~~~~~~i~~~~P~r~l~~ 101 (555)
+..+.+.+++.++-+++++|.++|++|+.|+++|.+|-|||||| +++|.+-..... ...|...+++.|+|.++.
T Consensus 373 ~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~ 452 (997)
T KOG0334|consen 373 SSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAM 452 (997)
T ss_pred hHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHH
Confidence 44566777889999999999999999999999999999999999 556666322211 123678999999999999
Q ss_pred HHHHHHHHHhCCccCCEEEEEEecCCC--------------CCchhhHHHhh--cCCC---CCCCceeEeecccccccch
Q 008735 102 TVAKRVAEESGVELGQRVGYSIRFDDR--------------TSTSTRIKEAL--LDPY---LSRYSAIIVDEAHERTVHT 162 (555)
Q Consensus 102 ~~~~~~~~~~~~~~~~~vg~~~~~~~~--------------~~~~~~i~~~~--~~~~---l~~~~~iIiDE~He~~~~~ 162 (555)
|+.+.+..+... ++..+-........ +.+..+...++ +... +..+.++|+||+
T Consensus 453 QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~dea------- 524 (997)
T KOG0334|consen 453 QIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEA------- 524 (997)
T ss_pred HHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechh-------
Confidence 999988777654 33333211111111 11111111111 1222 455669999999
Q ss_pred hHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCH--HHHHhhhCC
Q 008735 163 DVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFSEYFGC 240 (555)
Q Consensus 163 d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~--~~~~~~~~~ 240 (555)
|.|++++|.+++..++.++. ++.|.+++|||.+. +.+++-...
T Consensus 525 -------------------------------DrmfdmgfePq~~~Ii~nlr----pdrQtvlfSatfpr~m~~la~~vl~ 569 (997)
T KOG0334|consen 525 -------------------------------DRMFDMGFEPQITRILQNLR----PDRQTVLFSATFPRSMEALARKVLK 569 (997)
T ss_pred -------------------------------hhhheeccCcccchHHhhcc----hhhhhhhhhhhhhHHHHHHHHHhhc
Confidence 68999999999999999996 89999999999954 444433323
Q ss_pred CCeE-EeCCccc---cceEEEcCCC-CCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCC
Q 008735 241 AKAV-HVQGRQF---PVEILYTLYP-EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK 315 (555)
Q Consensus 241 ~~~~-~~~~~~~---~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~ 315 (555)
.|+- .+.++.. .+.......+ ....+...+..+ ... ...+++||||.....|..+.+.|.+. +
T Consensus 570 ~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl-~e~--~e~~~tiiFv~~qe~~d~l~~~L~~a---------g 637 (997)
T KOG0334|consen 570 KPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELL-GER--YEDGKTIIFVDKQEKADALLRDLQKA---------G 637 (997)
T ss_pred CCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHH-HHH--hhcCCEEEEEcCchHHHHHHHHHHhc---------C
Confidence 4443 2333321 2222233333 333333333322 222 23789999999999999999999875 8
Q ss_pred eEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHH
Q 008735 316 LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQ 395 (555)
Q Consensus 316 ~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Q 395 (555)
+.+..+||+.++.+|..+++.|++|..++||||+++++|+|++++..||+ || +|--.+.|+|
T Consensus 638 ~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn--------yd----------~pnh~edyvh 699 (997)
T KOG0334|consen 638 YNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN--------YD----------FPNHYEDYVH 699 (997)
T ss_pred cchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE--------cc----------cchhHHHHHH
Confidence 88889999999999999999999999999999999999999999999999 99 7888888999
Q ss_pred HhcccCCCC-CCEEEEccChhhH
Q 008735 396 RSGRAGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 396 r~GRaGR~~-~G~~~~l~~~~~~ 417 (555)
|+||+||.| .|.|+.|.++++.
T Consensus 700 R~gRTgragrkg~AvtFi~p~q~ 722 (997)
T KOG0334|consen 700 RVGRTGRAGRKGAAVTFITPDQL 722 (997)
T ss_pred HhcccccCCccceeEEEeChHHh
Confidence 999999999 8999999988544
No 71
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=264.66 Aligned_cols=121 Identities=20% Similarity=0.275 Sum_probs=95.7
Q ss_pred HHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEe----cCCCCHHHHHhhcCcCCCCCcEEEEecC
Q 008735 274 FQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI----FSSLPSEQQMRVFAPAAAGFRKVILATN 349 (555)
Q Consensus 274 ~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~l----h~~l~~~~r~~i~~~f~~g~~~vlvaT~ 349 (555)
.+.....+..++|||+.+|+.|+.+..+|.+.... .-.+.+-++-- ..+|++.+|.+++++|++|+++|||||+
T Consensus 405 ~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~--~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATS 482 (746)
T KOG0354|consen 405 VEQFEQNPDSRTIIFVETRESALALKKWLLQLHEL--GIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATS 482 (746)
T ss_pred HHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhc--ccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEec
Confidence 33334445678999999999999999999863211 00111222211 2489999999999999999999999999
Q ss_pred ccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChh
Q 008735 350 IAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPEN 415 (555)
Q Consensus 350 ~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~ 415 (555)
++|.|+||+.++.||. ||. ..+....+||+|| ||...|+|+.|++..
T Consensus 483 V~EEGLDI~ec~lVIc--------Yd~----------~snpIrmIQrrGR-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 483 VAEEGLDIGECNLVIC--------YDY----------SSNPIRMVQRRGR-GRARNSKCVLLTTGS 529 (746)
T ss_pred chhccCCcccccEEEE--------ecC----------CccHHHHHHHhcc-ccccCCeEEEEEcch
Confidence 9999999999999998 883 4556789999999 999999999999743
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=1.1e-28 Score=250.53 Aligned_cols=279 Identities=19% Similarity=0.188 Sum_probs=173.4
Q ss_pred HHHHHHHHHhcCC--eEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCc---cCCEEE
Q 008735 46 VEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE---LGQRVG 120 (555)
Q Consensus 46 ~Q~~~i~~i~~~~--~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~---~~~~vg 120 (555)
+|.++++++.+++ ++++++|||||||.+....++.. +..++++.|+++++.++.+++...+... .+..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~ 75 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLL 75 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 5899999999887 48899999999996655554432 2357888999999999998877765210 111111
Q ss_pred EEEec---C-------------------------------CCCCchhhHHHhhc----CC------CCCCCceeEeeccc
Q 008735 121 YSIRF---D-------------------------------DRTSTSTRIKEALL----DP------YLSRYSAIIVDEAH 156 (555)
Q Consensus 121 ~~~~~---~-------------------------------~~~~~~~~i~~~~~----~~------~l~~~~~iIiDE~H 156 (555)
-.... + ..++.+..+..++. .+ ++.++++||+||+|
T Consensus 76 ~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred EecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccc
Confidence 00000 0 00011111111111 11 25789999999999
Q ss_pred ccccchhHHHH-HHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHH
Q 008735 157 ERTVHTDVLLG-LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS 235 (555)
Q Consensus 157 e~~~~~d~ll~-~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~ 235 (555)
+.+.+....+. .+....-.+ ... ...++++||||++.....
T Consensus 156 ~~~~~~~~~~~~~l~~~~~~~----------------------------------~~~----~~~~~i~lSAT~~~~~~~ 197 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIR----------------------------------FFE----CRRKFVFLSATPDPALIL 197 (357)
T ss_pred ccCcccchhhhhhhHHHHHHH----------------------------------hhh----cCCcEEEEecCCCHHHHH
Confidence 87754432222 111111111 000 346999999999765322
Q ss_pred ---hh-hCCCCeEEeCCccc----------------------cceEEEcCCCC--CChHHHHHHHHHHHHhcCCCCcEEE
Q 008735 236 ---EY-FGCAKAVHVQGRQF----------------------PVEILYTLYPE--PDYLDATLITIFQVHLDEAPGDILV 287 (555)
Q Consensus 236 ---~~-~~~~~~~~~~~~~~----------------------~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~iLV 287 (555)
+. +-+.++..+.|..+ +++..+..... ...+......+.+......++++||
T Consensus 198 ~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LI 277 (357)
T TIGR03158 198 RLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAI 277 (357)
T ss_pred HHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEE
Confidence 22 01235555555511 23333322111 1112222333333333345678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCC
Q 008735 288 FLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPG 367 (555)
Q Consensus 288 F~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g 367 (555)
||+|+++++.+++.|++.. .++.+..+||.+++.+|.++. +.+|||||+++++|||+|++ +||
T Consensus 278 f~nt~~~~~~l~~~L~~~~-------~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi--- 340 (357)
T TIGR03158 278 ILDSLDEVNRLSDLLQQQG-------LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI--- 340 (357)
T ss_pred EECCHHHHHHHHHHHhhhC-------CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE---
Confidence 9999999999999998741 145788899999999997653 67899999999999999987 555
Q ss_pred cccceeecCCCCccccceeecCHHhHHHHhcccC
Q 008735 368 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 401 (555)
Q Consensus 368 ~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaG 401 (555)
++ |.+..+|+||+||+|
T Consensus 341 ------~~-----------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 ------FS-----------ARDAAAFWQRLGRLG 357 (357)
T ss_pred ------EC-----------CCCHHHHhhhcccCC
Confidence 22 678899999999998
No 73
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=8.1e-30 Score=260.09 Aligned_cols=321 Identities=19% Similarity=0.235 Sum_probs=238.2
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEE
Q 008735 40 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 119 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~v 119 (555)
.+.+.++|..++..+.+++.++|.|.|.+|||..+..++..... .+++|+++.|-+++..|-+..+..+++ .+|...
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr--~kQRVIYTSPIKALSNQKYREl~~EF~-DVGLMT 203 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR--EKQRVIYTSPIKALSNQKYRELLEEFK-DVGLMT 203 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH--hcCeEEeeChhhhhcchhHHHHHHHhc-ccceee
Confidence 34567899999999999999999999999999777666655532 367899999999999999999988887 566666
Q ss_pred EEEEecCCC---CCchhhHHHhhc--CCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcch
Q 008735 120 GYSIRFDDR---TSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSD 194 (555)
Q Consensus 120 g~~~~~~~~---~~~~~~i~~~~~--~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d 194 (555)
|-..-.... +.+...++.++- ...++.+.+||+||+|
T Consensus 204 GDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH-------------------------------------- 245 (1041)
T KOG0948|consen 204 GDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH-------------------------------------- 245 (1041)
T ss_pred cceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh--------------------------------------
Confidence 633221111 122233333433 2447889999999998
Q ss_pred hhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhC-----CCCeEEeCCccccceEEEcCC--------
Q 008735 195 MILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFG-----CAKAVHVQGRQFPVEILYTLY-------- 260 (555)
Q Consensus 195 ~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~-------- 260 (555)
.|-|..+|-.++.++--++ .+++.|++|||+ |+.+|++|.- .+.++...-|+-|+..+..+.
T Consensus 246 YMRDkERGVVWEETIIllP----~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylv 321 (1041)
T KOG0948|consen 246 YMRDKERGVVWEETIILLP----DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLV 321 (1041)
T ss_pred hccccccceeeeeeEEecc----ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEE
Confidence 7889999999999999998 789999999999 8999999973 345666666666665442221
Q ss_pred -CC-CCh----HHHH----------------------------------HHHHHHHHhcCCCCcEEEEcCCHHHHHHHHH
Q 008735 261 -PE-PDY----LDAT----------------------------------LITIFQVHLDEAPGDILVFLTGQEEIESVER 300 (555)
Q Consensus 261 -~~-~~~----~~~~----------------------------------~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~ 300 (555)
.. ..+ ...+ +-.++.........++|||+-++++|+..|-
T Consensus 322 VDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Al 401 (1041)
T KOG0948|consen 322 VDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYAL 401 (1041)
T ss_pred EecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHH
Confidence 10 111 1111 1122222223335689999999999999988
Q ss_pred HHHHHhh------------------cCCCCCCC------------eEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCc
Q 008735 301 LVQERLL------------------QLPEASRK------------LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI 350 (555)
Q Consensus 301 ~L~~~~~------------------~~~~~~~~------------~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~ 350 (555)
.+.+.-- .+..+..+ -.+..+|||+-+--++.|+-.|.+|-+|+|+||-+
T Consensus 402 qm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATET 481 (1041)
T KOG0948|consen 402 QMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATET 481 (1041)
T ss_pred hhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhh
Confidence 7765411 11111111 14778899999999999999999999999999999
Q ss_pred cccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEccChh
Q 008735 351 AETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 415 (555)
Q Consensus 351 ~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 415 (555)
++.|+|.|+-++|+- ..+.||.. ...|+|..+|+||.|||||.| .|.|+.+.++.
T Consensus 482 FsiGLNMPAkTVvFT----~~rKfDG~------~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 482 FSIGLNMPAKTVVFT----AVRKFDGK------KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred hhhccCCcceeEEEe----eccccCCc------ceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 999999999888874 55556643 337999999999999999999 89999998654
No 74
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=8.2e-30 Score=243.89 Aligned_cols=316 Identities=16% Similarity=0.266 Sum_probs=234.2
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhc-cccCCCcEEEEeCccHHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA-GFCRDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~-~~~~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
.+.+..-+-.-++-.|+.+|+.++..+-.|.++.+.+++|+|||......++.. ........++++.|+|+++.|..+.
T Consensus 34 ~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v 113 (397)
T KOG0327|consen 34 KESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKV 113 (397)
T ss_pred CHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHH
Confidence 445556666779999999999999999999999999999999994444444433 2222345789999999999998854
Q ss_pred HHHHhCCccCCEEEEEEecC---------------CCCCchhhHHHhhcCC--CCCCCceeEeecccccccchhHHHHHH
Q 008735 107 VAEESGVELGQRVGYSIRFD---------------DRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLL 169 (555)
Q Consensus 107 ~~~~~~~~~~~~vg~~~~~~---------------~~~~~~~~i~~~~~~~--~l~~~~~iIiDE~He~~~~~d~ll~~l 169 (555)
. ...+...+..+...+++. ..+.++.++..++... ....+.++|+||+
T Consensus 114 ~-~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa-------------- 178 (397)
T KOG0327|consen 114 V-RALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA-------------- 178 (397)
T ss_pred H-HhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecch--------------
Confidence 3 333322222221111111 0112223333333222 2456899999999
Q ss_pred HHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHH--HH-hhhCCCCeEEe
Q 008735 170 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG--FS-EYFGCAKAVHV 246 (555)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~--~~-~~~~~~~~~~~ 246 (555)
|+|+..++...+..++..++ ++.|++++|||++.+. ++ +|..++-.+.+
T Consensus 179 ------------------------DEmLs~gfkdqI~~if~~lp----~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~v 230 (397)
T KOG0327|consen 179 ------------------------DEMLSRGFKDQIYDIFQELP----SDVQVVLLSATMPSDVLEVTKKFMREPVRILV 230 (397)
T ss_pred ------------------------HhhhccchHHHHHHHHHHcC----cchhheeecccCcHHHHHHHHHhccCceEEEe
Confidence 68999999999999999998 7889999999996654 33 45444433333
Q ss_pred CCccc---cceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecC
Q 008735 247 QGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS 323 (555)
Q Consensus 247 ~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~ 323 (555)
..... .++.+|....... ++..+.+++. .-.+.+|||||+..+..+...|..+ ++.+..+|+
T Consensus 231 kk~~ltl~gikq~~i~v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~---------~~~~s~~~~ 295 (397)
T KOG0327|consen 231 KKDELTLEGIKQFYINVEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH---------GFTVSAIHG 295 (397)
T ss_pred cchhhhhhheeeeeeeccccc----cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC---------CceEEEeec
Confidence 32221 2233343333333 4445555555 4667999999999999999999766 889999999
Q ss_pred CCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCC
Q 008735 324 SLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE 403 (555)
Q Consensus 324 ~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~ 403 (555)
.|.+.+|..+...|+.|..+|||+|+.+++|+|+-++..||+ || .|..+.+|.||+||+||.
T Consensus 296 d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin--------yd----------lP~~~~~yihR~gr~gr~ 357 (397)
T KOG0327|consen 296 DMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN--------YD----------LPARKENYIHRIGRAGRF 357 (397)
T ss_pred ccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee--------ec----------cccchhhhhhhccccccc
Confidence 999999999999999999999999999999999999999999 99 688999999999999999
Q ss_pred C-CCEEEEccChhhHhc
Q 008735 404 G-PGKCFRLYPENEFDK 419 (555)
Q Consensus 404 ~-~G~~~~l~~~~~~~~ 419 (555)
| +|.++.++++++...
T Consensus 358 grkg~~in~v~~~d~~~ 374 (397)
T KOG0327|consen 358 GRKGVAINFVTEEDVRD 374 (397)
T ss_pred CCCceeeeeehHhhHHH
Confidence 9 999999998876654
No 75
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=7.7e-29 Score=258.88 Aligned_cols=322 Identities=17% Similarity=0.211 Sum_probs=230.1
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 008735 38 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 117 (555)
Q Consensus 38 ~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~ 117 (555)
.-.+.+..+|++++..+..|..++|.|+|.+|||.++..++.... ..+.+.+++.|-+++..|-...+...++ .+|.
T Consensus 293 ~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq--~h~TR~iYTSPIKALSNQKfRDFk~tF~-DvgL 369 (1248)
T KOG0947|consen 293 IYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ--KHMTRTIYTSPIKALSNQKFRDFKETFG-DVGL 369 (1248)
T ss_pred hCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH--hhccceEecchhhhhccchHHHHHHhcc-ccce
Confidence 345677899999999999999999999999999976666554431 2356899999999999999999988877 3444
Q ss_pred EEEEEEecCCC----CCchhhHHHhhc--CCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCC
Q 008735 118 RVGYSIRFDDR----TSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNE 191 (555)
Q Consensus 118 ~vg~~~~~~~~----~~~~~~i~~~~~--~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~ 191 (555)
..| .++.... +.+...++.++- ...++++.+||+||+|
T Consensus 370 lTG-DvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVH----------------------------------- 413 (1248)
T KOG0947|consen 370 LTG-DVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH----------------------------------- 413 (1248)
T ss_pred eec-ceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeee-----------------------------------
Confidence 444 1111111 122233333333 2457889999999999
Q ss_pred cchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhCCC---CeEEeC--CccccceEEEcCCC----
Q 008735 192 NSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCA---KAVHVQ--GRQFPVEILYTLYP---- 261 (555)
Q Consensus 192 ~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~---~~~~~~--~~~~~v~~~~~~~~---- 261 (555)
.+.|..+|..++.++.-++ .++++|++|||+ |+.+|+.|.|.. .+..+. .|+.|++.+.-...
T Consensus 414 ---YiND~eRGvVWEEViIMlP----~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~k 486 (1248)
T KOG0947|consen 414 ---YINDVERGVVWEEVIIMLP----RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFK 486 (1248)
T ss_pred ---ecccccccccceeeeeecc----ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceeh
Confidence 7888999999999999998 789999999999 899999999853 233333 34444433211000
Q ss_pred ---C----------------------------------------------CC--------hHHH---HHHHHHHHHhcCC
Q 008735 262 ---E----------------------------------------------PD--------YLDA---TLITIFQVHLDEA 281 (555)
Q Consensus 262 ---~----------------------------------------------~~--------~~~~---~~~~~~~~~~~~~ 281 (555)
. .. .... .+..++.......
T Consensus 487 iidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~ 566 (1248)
T KOG0947|consen 487 IIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKN 566 (1248)
T ss_pred hhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcc
Confidence 0 00 0000 1122222233334
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhh------------------cCCCCCC------------CeEEEEecCCCCHHHHH
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLL------------------QLPEASR------------KLVTVPIFSSLPSEQQM 331 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~------------------~~~~~~~------------~~~v~~lh~~l~~~~r~ 331 (555)
--|++|||-+++.|++.++.|...-. .+..... .-.++.||||+-+--++
T Consensus 567 lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE 646 (1248)
T KOG0947|consen 567 LLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKE 646 (1248)
T ss_pred cCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHH
Confidence 56899999999999999999876411 1111111 12477889999999999
Q ss_pred hhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEE
Q 008735 332 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKC 408 (555)
Q Consensus 332 ~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~ 408 (555)
-|+..|..|-+|||+||-++++|||.|+..+|++ ....+|.. ........+|.||+|||||.| .|.+
T Consensus 647 ~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~----Sl~KhDG~------efR~L~PGEytQMAGRAGRRGlD~tGTV 716 (1248)
T KOG0947|consen 647 VVELLFQRGLVKVLFATETFAMGVNMPARTVVFS----SLRKHDGN------EFRELLPGEYTQMAGRAGRRGLDETGTV 716 (1248)
T ss_pred HHHHHHhcCceEEEeehhhhhhhcCCCceeEEee----ehhhccCc------ceeecCChhHHhhhccccccccCcCceE
Confidence 9999999999999999999999999999888886 23334422 224577889999999999999 7999
Q ss_pred EEccChh
Q 008735 409 FRLYPEN 415 (555)
Q Consensus 409 ~~l~~~~ 415 (555)
+.+....
T Consensus 717 ii~~~~~ 723 (1248)
T KOG0947|consen 717 IIMCKDS 723 (1248)
T ss_pred EEEecCC
Confidence 8887544
No 76
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=5.2e-28 Score=256.57 Aligned_cols=291 Identities=16% Similarity=0.100 Sum_probs=186.7
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEE
Q 008735 40 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 119 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~v 119 (555)
...++++|+++++.+..++..++++|||+|||.++..++... ....+.+++++.|++.|+.|..+.+.++.........
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~-~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYY-LENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH-HhcCCCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 478999999999999999999999999999996554433211 1122348999999999999999998775532211111
Q ss_pred EEEEecC------CCCCchhhHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcc
Q 008735 120 GYSIRFD------DRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENS 193 (555)
Q Consensus 120 g~~~~~~------~~~~~~~~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (555)
+...... ..+.+...+... ...++.++++||+||||..... .+-.+
T Consensus 191 ~i~~g~~~~~~~~I~VaT~qsl~~~-~~~~~~~~~~iIvDEaH~~~~~--~~~~i------------------------- 242 (501)
T PHA02558 191 KIYSGTAKDTDAPIVVSTWQSAVKQ-PKEWFDQFGMVIVDECHLFTGK--SLTSI------------------------- 242 (501)
T ss_pred EEecCcccCCCCCEEEeeHHHHhhc-hhhhccccCEEEEEchhcccch--hHHHH-------------------------
Confidence 1110100 011111221111 1235788999999999954321 11111
Q ss_pred hhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHH-----HHhhhCCCCeEEeC-------CccccceEE--EcC
Q 008735 194 DMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG-----FSEYFGCAKAVHVQ-------GRQFPVEIL--YTL 259 (555)
Q Consensus 194 d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~-----~~~~~~~~~~~~~~-------~~~~~v~~~--~~~ 259 (555)
+..+. ...++++||||+.... +..+||.. ...+. +...+.+.. ...
T Consensus 243 ---------------l~~~~----~~~~~lGLTATp~~~~~~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~~~ 302 (501)
T PHA02558 243 ---------------ITKLD----NCKFKFGLTGSLRDGKANILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIFLR 302 (501)
T ss_pred ---------------HHhhh----ccceEEEEeccCCCccccHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEecc
Confidence 11111 2347899999993211 23345421 11111 111111111 110
Q ss_pred CC--------CCChH------------HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 008735 260 YP--------EPDYL------------DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 319 (555)
Q Consensus 260 ~~--------~~~~~------------~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~ 319 (555)
.+ ..++. ...+..+..... ..++++|||+.+.++++.+++.|.+. +..+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~---------g~~v~ 372 (501)
T PHA02558 303 YPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKV---------YDKVY 372 (501)
T ss_pred CCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHc---------CCCEE
Confidence 00 00110 111111111112 33577999999999999999999885 77899
Q ss_pred EecCCCCHHHHHhhcCcCCCCCcEEEEec-CccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhc
Q 008735 320 PIFSSLPSEQQMRVFAPAAAGFRKVILAT-NIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSG 398 (555)
Q Consensus 320 ~lh~~l~~~~r~~i~~~f~~g~~~vlvaT-~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~G 398 (555)
.+||+++.++|..+++.|++|+..||||| +++++|+|+|++++||. ++ .+.|...|+||+|
T Consensus 373 ~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl--------~~----------p~~s~~~~~QriG 434 (501)
T PHA02558 373 YVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF--------AH----------PSKSKIIVLQSIG 434 (501)
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE--------ec----------CCcchhhhhhhhh
Confidence 99999999999999999999999999998 89999999999999996 44 4667889999999
Q ss_pred ccCCCCCCE
Q 008735 399 RAGREGPGK 407 (555)
Q Consensus 399 RaGR~~~G~ 407 (555)
|+||.++|+
T Consensus 435 R~~R~~~~K 443 (501)
T PHA02558 435 RVLRKHGSK 443 (501)
T ss_pred ccccCCCCC
Confidence 999998654
No 77
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=4e-28 Score=263.48 Aligned_cols=321 Identities=19% Similarity=0.214 Sum_probs=234.4
Q ss_pred hhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccC
Q 008735 37 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 116 (555)
Q Consensus 37 ~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~ 116 (555)
....+.+.++|++++..+..|+.++|+||||||||.+...++...... +.+++++.|.+++..|.+..+...++.. .
T Consensus 114 ~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--~qrviYTsPIKALsNQKyrdl~~~fgdv-~ 190 (1041)
T COG4581 114 REYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--GQRVIYTSPIKALSNQKYRDLLAKFGDV-A 190 (1041)
T ss_pred HhCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--CCceEeccchhhhhhhHHHHHHHHhhhh-h
Confidence 346678889999999999999999999999999996666655544332 4569999999999999999988888744 3
Q ss_pred CEEEEEEecCCCCC--------chhhHHHhhcC--CCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCC
Q 008735 117 QRVGYSIRFDDRTS--------TSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNG 186 (555)
Q Consensus 117 ~~vg~~~~~~~~~~--------~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~ 186 (555)
..||...+ +..++ +...++.++.. ..+..+..||+||+|
T Consensus 191 ~~vGL~TG-Dv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvH------------------------------ 239 (1041)
T COG4581 191 DMVGLMTG-DVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVH------------------------------ 239 (1041)
T ss_pred hhccceec-ceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeee------------------------------
Confidence 33443222 22111 22334444432 468889999999999
Q ss_pred CCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhC-----CCCeEEeCCccccceEEEcCC
Q 008735 187 NNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFG-----CAKAVHVQGRQFPVEILYTLY 260 (555)
Q Consensus 187 ~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~ 260 (555)
.|.|..+|..++.++..++ .++++|+||||+ |+++|++|++ .+.++....|+.|...++...
T Consensus 240 --------yi~D~eRG~VWEE~Ii~lP----~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~ 307 (1041)
T COG4581 240 --------YIGDRERGVVWEEVIILLP----DHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVG 307 (1041)
T ss_pred --------eccccccchhHHHHHHhcC----CCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecC
Confidence 6889999999999999998 788999999999 9999999997 334555566777776665433
Q ss_pred C--------CCChHHH----HH--------------------------------------HHHHHHHhcCCCCcEEEEcC
Q 008735 261 P--------EPDYLDA----TL--------------------------------------ITIFQVHLDEAPGDILVFLT 290 (555)
Q Consensus 261 ~--------~~~~~~~----~~--------------------------------------~~~~~~~~~~~~~~iLVF~~ 290 (555)
. ..+.... .. -.++........-++++|+-
T Consensus 308 ~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~F 387 (1041)
T COG4581 308 KGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSF 387 (1041)
T ss_pred CceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEE
Confidence 1 0000000 00 01122222233467999999
Q ss_pred CHHHHHHHHHHHHHH-------------------hhcCCCCCCCe-------------EEEEecCCCCHHHHHhhcCcCC
Q 008735 291 GQEEIESVERLVQER-------------------LLQLPEASRKL-------------VTVPIFSSLPSEQQMRVFAPAA 338 (555)
Q Consensus 291 t~~~~~~l~~~L~~~-------------------~~~~~~~~~~~-------------~v~~lh~~l~~~~r~~i~~~f~ 338 (555)
++..|+..+..+... +..+..+..++ .+..+|+||-+..+..++..|.
T Consensus 388 Sr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq 467 (1041)
T COG4581 388 SRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQ 467 (1041)
T ss_pred chhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHh
Confidence 999999888776621 11222221111 3558899999999999999999
Q ss_pred CCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEccC
Q 008735 339 AGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYP 413 (555)
Q Consensus 339 ~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~ 413 (555)
.|.++|++||.+++.|+|.|.-++|+- ....||.. ...|.+..+|.|+.|||||.| .|.++....
T Consensus 468 ~GLvkvvFaTeT~s~GiNmPartvv~~----~l~K~dG~------~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 468 EGLVKVVFATETFAIGINMPARTVVFT----SLSKFDGN------GHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred ccceeEEeehhhhhhhcCCcccceeee----eeEEecCC------ceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 999999999999999999998888874 44446622 226899999999999999999 799888854
No 78
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=1e-27 Score=262.10 Aligned_cols=312 Identities=20% Similarity=0.270 Sum_probs=220.7
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHh
Q 008735 34 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 111 (555)
Q Consensus 34 ~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~ 111 (555)
+...-+.-..++-|.+++..++.|++++|..|||+||| |++|.++... ..+++.|...|.+.+...+.. .
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~g-------itvVISPL~SLm~DQv~~L~~-~ 327 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGG-------VTVVISPLISLMQDQVTHLSK-K 327 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCC-------ceEEeccHHHHHHHHHHhhhh-c
Confidence 34444555667889999999999999999999999999 7787776543 678889999998877766521 1
Q ss_pred CCccCCEEE--------------------EEEec--CCCCCchhhHHHhhcC-CCCCCCceeEeecccccccchhHHHHH
Q 008735 112 GVELGQRVG--------------------YSIRF--DDRTSTSTRIKEALLD-PYLSRYSAIIVDEAHERTVHTDVLLGL 168 (555)
Q Consensus 112 ~~~~~~~vg--------------------~~~~~--~~~~~~~~~i~~~~~~-~~l~~~~~iIiDE~He~~~~~d~ll~~ 168 (555)
+.......+ +.+-+ ...+.....+...+.+ ....-+.++|||||||.+.|..-+..-
T Consensus 328 ~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~ 407 (941)
T KOG0351|consen 328 GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPS 407 (941)
T ss_pred CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHH
Confidence 111000000 00000 0000000111111111 111227899999999999999888887
Q ss_pred HHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH---HHHhhhCCCCeEE
Q 008735 169 LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVH 245 (555)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~---~~~~~~~~~~~~~ 245 (555)
.+++...+.+ .+.+.+|++|||.... ++.+-++-.....
T Consensus 408 Yk~l~~l~~~--------------------------------------~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~ 449 (941)
T KOG0351|consen 408 YKRLGLLRIR--------------------------------------FPGVPFIALTATATERVREDVIRSLGLRNPEL 449 (941)
T ss_pred HHHHHHHHhh--------------------------------------CCCCCeEEeehhccHHHHHHHHHHhCCCCcce
Confidence 7777654421 1567999999999553 4445554332223
Q ss_pred eCCccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCC
Q 008735 246 VQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 325 (555)
Q Consensus 246 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 325 (555)
........+.+|...+... .+.............+.+.+||||.++.+|+.++..|... ++....||+||
T Consensus 450 ~~~sfnR~NL~yeV~~k~~-~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~---------~~~a~~YHAGl 519 (941)
T KOG0351|consen 450 FKSSFNRPNLKYEVSPKTD-KDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL---------GKSAAFYHAGL 519 (941)
T ss_pred ecccCCCCCceEEEEeccC-ccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh---------chhhHhhhcCC
Confidence 3333333344443333331 2222333344445566788999999999999999999987 78899999999
Q ss_pred CHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-
Q 008735 326 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG- 404 (555)
Q Consensus 326 ~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~- 404 (555)
+..+|..|...|..++++|||||=++++|||.|||+.||+ |. .|.|.+.|+|-+|||||.|
T Consensus 520 ~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH--------~~----------lPks~E~YYQE~GRAGRDG~ 581 (941)
T KOG0351|consen 520 PPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIH--------YS----------LPKSFEGYYQEAGRAGRDGL 581 (941)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEE--------CC----------CchhHHHHHHhccccCcCCC
Confidence 9999999999999999999999999999999999999999 44 6999999999999999999
Q ss_pred CCEEEEccChhhHhc
Q 008735 405 PGKCFRLYPENEFDK 419 (555)
Q Consensus 405 ~G~~~~l~~~~~~~~ 419 (555)
+..|..+|.-.++..
T Consensus 582 ~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 582 PSSCVLLYGYADISE 596 (941)
T ss_pred cceeEEecchhHHHH
Confidence 999999998887765
No 79
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=6.2e-28 Score=232.34 Aligned_cols=310 Identities=18% Similarity=0.176 Sum_probs=202.1
Q ss_pred HHHHHHHhhcCCC--cHHHHHHHHHHHh-cCCeEEEEcCCCCchh--hHHHHHHHhccccCCCcEEEEeCccHHHHHHHH
Q 008735 30 RRQKILQQRKSLP--IASVEKRLVEEVR-KNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVA 104 (555)
Q Consensus 30 ~~~~~~~~~~~l~--~~~~Q~~~i~~i~-~~~~~ii~apTGsGKT--~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~ 104 (555)
++.+.|++-.... =++.|++++..+- .+++|.|++|||+||| +++|.++.. ...+++.|..+++..+.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~-------gITIV~SPLiALIkDQi 78 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG-------GITIVISPLIALIKDQI 78 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhC-------CeEEEehHHHHHHHHHH
Confidence 4555555432221 1457898888765 5679999999999999 666665543 36778899999988777
Q ss_pred HHHHHHhCCccCCEEEEEEecCCCCCchhhHH----------------------------HhhcC-CCCCCCceeEeecc
Q 008735 105 KRVAEESGVELGQRVGYSIRFDDRTSTSTRIK----------------------------EALLD-PYLSRYSAIIVDEA 155 (555)
Q Consensus 105 ~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~----------------------------~~~~~-~~l~~~~~iIiDE~ 155 (555)
+.+...- ..+. ..++..++.++-+ .++.. -.-..++++|+||+
T Consensus 79 DHL~~LK-Vp~~-------SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 79 DHLKRLK-VPCE-------SLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHhcC-Cchh-------HhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechh
Confidence 6653321 1100 0112222222111 00000 00234689999999
Q ss_pred cccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHH
Q 008735 156 HERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS 235 (555)
Q Consensus 156 He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~ 235 (555)
||.+.+..-+..-..++-..|+. .+++.-+.++||.+++.-.
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~--------------------------------------~~~vpwvALTATA~~~VqE 192 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSV--------------------------------------CPGVPWVALTATANAKVQE 192 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhh--------------------------------------CCCCceEEeecccChhHHH
Confidence 99776654433222222222211 1788899999999776443
Q ss_pred hhhC----CCCeEEeCCccccceEEEcCCCC---CChHHHHHHHHHHHH---------hcCCCCcEEEEcCCHHHHHHHH
Q 008735 236 EYFG----CAKAVHVQGRQFPVEILYTLYPE---PDYLDATLITIFQVH---------LDEAPGDILVFLTGQEEIESVE 299 (555)
Q Consensus 236 ~~~~----~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~~iLVF~~t~~~~~~l~ 299 (555)
+.+. ..|+-.+....+.-+.+|..... .+......+...... .....|..||||.||++|++++
T Consensus 193 Di~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~A 272 (641)
T KOG0352|consen 193 DIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVA 272 (641)
T ss_pred HHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHH
Confidence 3321 23333333333333333322110 011111111111111 1112477999999999999999
Q ss_pred HHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCC
Q 008735 300 RLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKG 379 (555)
Q Consensus 300 ~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~ 379 (555)
-.|... ++.+..||+|+...||.++.+...+|++.||+||+.+++|||-|+|++||+ ||
T Consensus 273 I~l~~~---------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH--------W~---- 331 (641)
T KOG0352|consen 273 IMLEIA---------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH--------WS---- 331 (641)
T ss_pred HHhhhc---------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe--------cC----
Confidence 999876 999999999999999999999999999999999999999999999999999 87
Q ss_pred ccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhhHhc
Q 008735 380 MESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFDK 419 (555)
Q Consensus 380 ~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~~ 419 (555)
.+.+.+-|.|..|||||.| +..|-..|+.++-+.
T Consensus 332 ------~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 332 ------PSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred ------chhhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 6788899999999999999 888888888776654
No 80
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.7e-28 Score=234.82 Aligned_cols=323 Identities=18% Similarity=0.226 Sum_probs=233.5
Q ss_pred CCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhccccCCCcEEEEeCccH
Q 008735 21 KPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRR 97 (555)
Q Consensus 21 ~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~~~~~~~i~~~~P~r 97 (555)
..|.... .......+.+.++..++++|++.++.++++++++-.|-|||||| +++|.+.........+.+.+++.|++
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsptr 100 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTR 100 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcH
Confidence 4444443 55677788899999999999999999999999999999999999 66777665554455577999999999
Q ss_pred HHHHHHHHHHHHHhC---CccCCEEEEEEe----------cCCCCCchhhHHHhhc--CCCCCCCceeEeecccccccch
Q 008735 98 VAAVTVAKRVAEESG---VELGQRVGYSIR----------FDDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHT 162 (555)
Q Consensus 98 ~l~~~~~~~~~~~~~---~~~~~~vg~~~~----------~~~~~~~~~~i~~~~~--~~~l~~~~~iIiDE~He~~~~~ 162 (555)
.++.|..+.+.+.-. ......+|+.-. .+....++.++..+.. +-.++.+.+||+||+
T Consensus 101 eLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEa------- 173 (529)
T KOG0337|consen 101 ELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEA------- 173 (529)
T ss_pred HHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhh-------
Confidence 999998887655432 222222332110 0111112222221111 223788999999999
Q ss_pred hHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH--HHHhhhCC
Q 008735 163 DVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFSEYFGC 240 (555)
Q Consensus 163 d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--~~~~~~~~ 240 (555)
|.+++++|.+++.+++.+++ .+.|.++||||++.. ++++-=..
T Consensus 174 -------------------------------drlfemgfqeql~e~l~rl~----~~~QTllfSatlp~~lv~fakaGl~ 218 (529)
T KOG0337|consen 174 -------------------------------DRLFEMGFQEQLHEILSRLP----ESRQTLLFSATLPRDLVDFAKAGLV 218 (529)
T ss_pred -------------------------------hHHHhhhhHHHHHHHHHhCC----CcceEEEEeccCchhhHHHHHccCC
Confidence 68999999999999999998 556999999999654 44433112
Q ss_pred CCe-EEeC--Ccc-ccceEEEcCCCCCChHHHHHHHHHHHHhcC-CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCC
Q 008735 241 AKA-VHVQ--GRQ-FPVEILYTLYPEPDYLDATLITIFQVHLDE-APGDILVFLTGQEEIESVERLVQERLLQLPEASRK 315 (555)
Q Consensus 241 ~~~-~~~~--~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~ 315 (555)
.|+ +.+. ... ..++..+......+ ....++.+.... .+.+++||++|+.+++.+...|++. +
T Consensus 219 ~p~lVRldvetkise~lk~~f~~~~~a~----K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~---------g 285 (529)
T KOG0337|consen 219 PPVLVRLDVETKISELLKVRFFRVRKAE----KEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF---------G 285 (529)
T ss_pred CCceEEeehhhhcchhhhhheeeeccHH----HHHHHHHHHhccccccceeEEecccchHHHHHHHHHhc---------C
Confidence 222 2211 111 11111222222222 222333333221 1457999999999999999999886 8
Q ss_pred eEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHH
Q 008735 316 LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQ 395 (555)
Q Consensus 316 ~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Q 395 (555)
+.+..+||+|++.-|..-+..|..++-.++|.|+++++|+|+|..+.||| || .|.+..-|+|
T Consensus 286 ~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin--------yd----------~p~~~klFvh 347 (529)
T KOG0337|consen 286 GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN--------YD----------FPPDDKLFVH 347 (529)
T ss_pred CCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc--------cc----------CCCCCceEEE
Confidence 88889999999999999999999999999999999999999999999999 88 6788888999
Q ss_pred HhcccCCCC-CCEEEEccChhh
Q 008735 396 RSGRAGREG-PGKCFRLYPENE 416 (555)
Q Consensus 396 r~GRaGR~~-~G~~~~l~~~~~ 416 (555)
|+||+.|.| .|.+|.+...++
T Consensus 348 RVgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 348 RVGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred EecchhhccccceEEEEEeccc
Confidence 999999999 999999986543
No 81
>PRK13766 Hef nuclease; Provisional
Probab=99.95 E-value=7.6e-26 Score=254.04 Aligned_cols=108 Identities=25% Similarity=0.458 Sum_probs=97.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCC--------CCHHHHHhhcCcCCCCCcEEEEecCcc
Q 008735 280 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS--------LPSEQQMRVFAPAAAGFRKVILATNIA 351 (555)
Q Consensus 280 ~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~--------l~~~~r~~i~~~f~~g~~~vlvaT~~~ 351 (555)
..++++||||+++..++.+++.|... ++.+..+||. |++.+|..+++.|++|+.+|||||+++
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~---------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~ 433 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKE---------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVA 433 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhC---------CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChh
Confidence 45788999999999999999999664 6666777765 999999999999999999999999999
Q ss_pred ccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccCh
Q 008735 352 ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 414 (555)
Q Consensus 352 e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~ 414 (555)
++|+|+|++++||+ || .+.+...|+||+||+||.++|.+|.|+.+
T Consensus 434 ~eGldi~~~~~VI~--------yd----------~~~s~~r~iQR~GR~gR~~~~~v~~l~~~ 478 (773)
T PRK13766 434 EEGLDIPSVDLVIF--------YE----------PVPSEIRSIQRKGRTGRQEEGRVVVLIAK 478 (773)
T ss_pred hcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhcccCcCCCCEEEEEEeC
Confidence 99999999999999 98 46788899999999999999999999853
No 82
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=2.1e-26 Score=261.27 Aligned_cols=305 Identities=16% Similarity=0.157 Sum_probs=186.7
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhC
Q 008735 33 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 112 (555)
Q Consensus 33 ~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~ 112 (555)
++..+.....|+++|.++++.+..|++++++||||||||+.+..++... ..++.+++++.|+++|+.|+.+.+.....
T Consensus 71 ~~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l--~~~g~~alIL~PTreLa~Qi~~~l~~l~~ 148 (1176)
T PRK09401 71 KFFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYL--AKKGKKSYIIFPTRLLVEQVVEKLEKFGE 148 (1176)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEEEEeccHHHHHHHHHHHHHHhh
Confidence 3444555569999999999999999999999999999995332222211 22367899999999999999999876654
Q ss_pred CccCCEEEEEEec--------------------CCCCCchhhHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHHH
Q 008735 113 VELGQRVGYSIRF--------------------DDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 172 (555)
Q Consensus 113 ~~~~~~vg~~~~~--------------------~~~~~~~~~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~ 172 (555)
. .+..+...... +..+.+..++...+..-....++++|+||||..--.
T Consensus 149 ~-~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~----------- 216 (1176)
T PRK09401 149 K-VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKS----------- 216 (1176)
T ss_pred h-cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhc-----------
Confidence 2 22222111110 111223333333322222456999999999941110
Q ss_pred HHhhcccccCCCCCCCCCCcchhhhc-cCCC-Ccccchhhhccc--------------------cCCCCceEEEeccCCC
Q 008735 173 QNARSKSADGHSNGNNNNENSDMILD-RGND-TNGINTLKQCQG--------------------RKFAPLKLIIMSASLD 230 (555)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~d~~l~-~~~~-~~~~~~l~~~~~--------------------~~~~~~~ii~~SAT~~ 230 (555)
+...|.++. .+|. +++..++..+.. ....+.|++++|||++
T Consensus 217 -----------------~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~ 279 (1176)
T PRK09401 217 -----------------SKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGR 279 (1176)
T ss_pred -----------------ccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCC
Confidence 011122222 3332 223333322221 0112678999999996
Q ss_pred HHHHH-hhhCCCCeEEeCCcc---ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHH---HHHHHHHHH
Q 008735 231 ARGFS-EYFGCAKAVHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE---IESVERLVQ 303 (555)
Q Consensus 231 ~~~~~-~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~---~~~l~~~L~ 303 (555)
++... .+|.+.-.+.+.... ..+...|.... +... .+..+.... +.++||||++++. ++.+++.|.
T Consensus 280 ~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~----~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~ 352 (1176)
T PRK09401 280 PRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVE----KLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLE 352 (1176)
T ss_pred ccchHHHHhhccceEEecCcccccCCceEEEEEcc--cHHH----HHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHH
Confidence 54322 233332223333221 23333443322 2222 222222222 3579999999777 999999998
Q ss_pred HHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEe----cCccccccccCC-eEEEEeCCcccceeecCCC
Q 008735 304 ERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVKARLYDPVK 378 (555)
Q Consensus 304 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlva----T~~~e~Gvdip~-v~~VId~g~~~~~~yd~~~ 378 (555)
+. ++.+..+||+| + +.++.|++|+.+|||| ||+++||||+|+ |++||+.|..+.+.
T Consensus 353 ~~---------gi~v~~~hg~l----~-~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~----- 413 (1176)
T PRK09401 353 DL---------GINAELAISGF----E-RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKF----- 413 (1176)
T ss_pred HC---------CCcEEEEeCcH----H-HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEE-----
Confidence 86 89999999999 2 2349999999999999 699999999999 89999966554332
Q ss_pred CccccceeecCHHhHHHHhcccC
Q 008735 379 GMESLLVVPISKAQALQRSGRAG 401 (555)
Q Consensus 379 ~~~~l~~~p~s~~~~~Qr~GRaG 401 (555)
.-.....+.||.||+-
T Consensus 414 -------~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 414 -------SLEEELAPPFLLLRLL 429 (1176)
T ss_pred -------eccccccCHHHHHHHH
Confidence 0113456788888873
No 83
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=3.1e-26 Score=241.35 Aligned_cols=335 Identities=19% Similarity=0.210 Sum_probs=223.9
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHH--HHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLV--EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAK 105 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i--~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~ 105 (555)
....+.-.+..+....+.+|.+++ +.+..+++.+...||+.|||....+.++......+ +.++.+.|....++.-..
T Consensus 209 ~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r-r~~llilp~vsiv~Ek~~ 287 (1008)
T KOG0950|consen 209 TKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR-RNVLLILPYVSIVQEKIS 287 (1008)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh-hceeEecceeehhHHHHh
Confidence 344555667788889999999997 55789999999999999999777666666554433 356666677666665555
Q ss_pred HHHHHhCCccCCEE-EEEEecCCCC---------C----chhhHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHH
Q 008735 106 RVAEESGVELGQRV-GYSIRFDDRT---------S----TSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKK 171 (555)
Q Consensus 106 ~~~~~~~~~~~~~v-g~~~~~~~~~---------~----~~~~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~ 171 (555)
.+..+. ...|..+ +|..++.... . ..+.+..++....+..++.||+||.|
T Consensus 288 ~l~~~~-~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElh--------------- 351 (1008)
T KOG0950|consen 288 ALSPFS-IDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELH--------------- 351 (1008)
T ss_pred hhhhhc-cccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeee---------------
Confidence 444332 2222222 1221111100 0 01112244445667889999999998
Q ss_pred HHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhcc-ccCCCCceEEEeccCC-CHHHHHhhhCCCCeEEeCCc
Q 008735 172 VQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQ-GRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGR 249 (555)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~-~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~ 249 (555)
++.|.++|+.++.++.++. ......+|+|+||||+ |.+.++.|+. +.++.-.-+
T Consensus 352 -----------------------mi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~-A~~y~t~fR 407 (1008)
T KOG0950|consen 352 -----------------------MIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLD-AFVYTTRFR 407 (1008)
T ss_pred -----------------------eeeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhh-hhheecccC
Confidence 7777777777777776662 1111348999999999 8899999996 334443344
Q ss_pred cccceEEEcCCCCCC-h-HHHHHHHHHH----------------H-HhcC-CCCcEEEEcCCHHHHHHHHHHHHHHhhcC
Q 008735 250 QFPVEILYTLYPEPD-Y-LDATLITIFQ----------------V-HLDE-APGDILVFLTGQEEIESVERLVQERLLQL 309 (555)
Q Consensus 250 ~~~v~~~~~~~~~~~-~-~~~~~~~~~~----------------~-~~~~-~~~~iLVF~~t~~~~~~l~~~L~~~~~~~ 309 (555)
+.+...+...-...- - ....+..+.. . .... ++.++|||||+++.|+.+|..+....++.
T Consensus 408 Pv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~ 487 (1008)
T KOG0950|consen 408 PVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKH 487 (1008)
T ss_pred cccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHh
Confidence 444443332111100 0 1111111110 0 0111 13459999999999999998777664411
Q ss_pred C-----------------------------CCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCe
Q 008735 310 P-----------------------------EASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI 360 (555)
Q Consensus 310 ~-----------------------------~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v 360 (555)
. .....+.+..+|+|++.++|+.++..|++|.+.|++||++++.|+|+|..
T Consensus 488 ~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPAr 567 (1008)
T KOG0950|consen 488 IKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPAR 567 (1008)
T ss_pred hhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcc
Confidence 0 11334578899999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEccChhhH
Q 008735 361 KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEF 417 (555)
Q Consensus 361 ~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~ 417 (555)
+++|-.-+. .....+..+|.||+|||||.| -|.++.++.+.+.
T Consensus 568 RVIiraP~~--------------g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 568 RVIIRAPYV--------------GREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred eeEEeCCcc--------------ccchhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 999953331 123577889999999999999 7999999977664
No 84
>PRK14701 reverse gyrase; Provisional
Probab=99.94 E-value=6.7e-26 Score=262.27 Aligned_cols=331 Identities=15% Similarity=0.119 Sum_probs=196.9
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHH
Q 008735 31 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 110 (555)
Q Consensus 31 ~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~ 110 (555)
+.+.+++...+.++++|+++++.+.+|++++++||||||||++...+.+.. ..++.+++++.|+++|+.|+.+.+...
T Consensus 68 ~~~~f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~--~~~g~~aLVl~PTreLa~Qi~~~l~~l 145 (1638)
T PRK14701 68 FEEFFEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL--ALKGKKCYIILPTTLLVKQTVEKIESF 145 (1638)
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH--HhcCCeEEEEECHHHHHHHHHHHHHHH
Confidence 444455423348999999999999999999999999999996322222211 123568999999999999999988765
Q ss_pred hCCc-cCCEEEEEEecCC------------------CCCchhhHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHH
Q 008735 111 SGVE-LGQRVGYSIRFDD------------------RTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKK 171 (555)
Q Consensus 111 ~~~~-~~~~vg~~~~~~~------------------~~~~~~~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~ 171 (555)
.... .+..+.+...... .+.++..+...+..-...+++++|+||||+..-
T Consensus 146 ~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~----------- 214 (1638)
T PRK14701 146 CEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLK----------- 214 (1638)
T ss_pred HhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccc-----------
Confidence 4311 1222222211100 011111111111111125689999999995321
Q ss_pred HHHhhcccccCCCCCCCCCCcchhhhc-cCCCCcccc----hhh---------------hc---cccCCCCce-EEEecc
Q 008735 172 VQNARSKSADGHSNGNNNNENSDMILD-RGNDTNGIN----TLK---------------QC---QGRKFAPLK-LIIMSA 227 (555)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~----~l~---------------~~---~~~~~~~~~-ii~~SA 227 (555)
.|...|.+++ .+|.+++.. ++. .+ ........+ ++++||
T Consensus 215 -----------------~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SA 277 (1638)
T PRK14701 215 -----------------ASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASA 277 (1638)
T ss_pred -----------------cccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEec
Confidence 1122233333 233333322 111 01 001112334 677999
Q ss_pred CCCH-HHHHhhhCCCCeEEeCCccc---cceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHH---HHHHHH
Q 008735 228 SLDA-RGFSEYFGCAKAVHVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE---IESVER 300 (555)
Q Consensus 228 T~~~-~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~---~~~l~~ 300 (555)
|+++ ....+++...-.+.+..... .+...|.... .+... .+..+.... +.++||||+|++. |+++++
T Consensus 278 T~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~-~~~k~----~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~ 351 (1638)
T PRK14701 278 TGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNPE-KIIKE----HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEK 351 (1638)
T ss_pred CCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEECC-HHHHH----HHHHHHHhC-CCCeEEEEeccccchHHHHHHH
Confidence 9965 34556665544454443322 2333333221 11111 233333322 4579999999886 488899
Q ss_pred HHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEec----CccccccccCC-eEEEEeCCccccee--
Q 008735 301 LVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT----NIAETSVTIPG-IKYVIDPGFVKARL-- 373 (555)
Q Consensus 301 ~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT----~~~e~Gvdip~-v~~VId~g~~~~~~-- 373 (555)
.|.+. ++.+..+||+ |..+++.|++|+.+||||| ++++||||+|+ |++||+.|..+.+.
T Consensus 352 ~L~~~---------Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~ 417 (1638)
T PRK14701 352 YLLED---------GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRV 417 (1638)
T ss_pred HHHHC---------CCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcch
Confidence 99886 8999999995 8899999999999999999 59999999999 99999966655331
Q ss_pred --ecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhhH
Q 008735 374 --YDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 374 --yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 417 (555)
|+..... ... .....++.|||||.| ++.++..+..+..
T Consensus 418 e~~~~~~~~-----~~~-~~~~~~~~~~a~~~g~~~~~~~~~~~~~~ 458 (1638)
T PRK14701 418 DLEDPTIYR-----ILG-LLSEILKIEEELKEGIPIEGVLDVFPEDV 458 (1638)
T ss_pred hhcccchhh-----hhc-chHHHHHhhhhcccCCcchhHHHhHHHHH
Confidence 1111100 000 234567789999999 7777655544433
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.94 E-value=5.6e-25 Score=241.50 Aligned_cols=294 Identities=19% Similarity=0.173 Sum_probs=175.7
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHh----C-Cc
Q 008735 40 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES----G-VE 114 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~----~-~~ 114 (555)
...++++|+.+......+..++|.+|||+|||..+..++...........+++..|+++.+.++.+++.+.. . ..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 457899999886554557789999999999995544433322112234579999999999999999976532 1 11
Q ss_pred cCCEEEEEEe---cCC----CCC------chhhHHHhhc--------CC-------------------CCCC----Ccee
Q 008735 115 LGQRVGYSIR---FDD----RTS------TSTRIKEALL--------DP-------------------YLSR----YSAI 150 (555)
Q Consensus 115 ~~~~vg~~~~---~~~----~~~------~~~~i~~~~~--------~~-------------------~l~~----~~~i 150 (555)
+....|...- +.. ... .......|+. .+ .++. -++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 2112221100 000 000 0000001111 00 1122 2589
Q ss_pred EeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCC
Q 008735 151 IVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD 230 (555)
Q Consensus 151 IiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 230 (555)
||||+|..+.++..++..+-+.+.. ...++|+||||++
T Consensus 444 IiDEVHAyD~ym~~lL~~~L~~l~~------------------------------------------~g~~vIllSATLP 481 (878)
T PRK09694 444 IVDEVHAYDAYMYGLLEAVLKAQAQ------------------------------------------AGGSVILLSATLP 481 (878)
T ss_pred EEechhhCCHHHHHHHHHHHHHHHh------------------------------------------cCCcEEEEeCCCC
Confidence 9999998877666554433332221 3457999999997
Q ss_pred HHHHHhh---hCCC---------CeEEeCCc----cc---------c--ceEEEcCC--CCCChHHHHHHHHHHHHhcCC
Q 008735 231 ARGFSEY---FGCA---------KAVHVQGR----QF---------P--VEILYTLY--PEPDYLDATLITIFQVHLDEA 281 (555)
Q Consensus 231 ~~~~~~~---~~~~---------~~~~~~~~----~~---------~--v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 281 (555)
.....++ ++.. |.+...+. .+ + ..+..... .........+..+.+.. ..
T Consensus 482 ~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~ 559 (878)
T PRK09694 482 ATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NA 559 (878)
T ss_pred HHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hc
Confidence 6443322 2211 11110000 00 0 00000000 00011123333333332 24
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHH----hhcCcC-CCCC---cEEEEecCcccc
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM----RVFAPA-AAGF---RKVILATNIAET 353 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~----~i~~~f-~~g~---~~vlvaT~~~e~ 353 (555)
++++||||||++.++++++.|++... ....+..+||.++..+|. ++++.| ++|+ .+|||||+++|+
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~~------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~ 633 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELNN------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQ 633 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhCC------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhh
Confidence 67899999999999999999987521 135789999999999994 566677 6666 479999999999
Q ss_pred ccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC
Q 008735 354 SVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 404 (555)
Q Consensus 354 Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~ 404 (555)
|||+ +++++|. | ..+.++++||+||+||.+
T Consensus 634 GLDI-d~DvlIt---------d-----------laPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 634 SLDL-DFDWLIT---------Q-----------LCPVDLLFQRLGRLHRHH 663 (878)
T ss_pred eeec-CCCeEEE---------C-----------CCCHHHHHHHHhccCCCC
Confidence 9999 5788884 1 234679999999999986
No 86
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=6e-25 Score=234.77 Aligned_cols=292 Identities=16% Similarity=0.173 Sum_probs=178.6
Q ss_pred CCcHHHHHHHHHHHhc-C--CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 008735 41 LPIASVEKRLVEEVRK-N--DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 117 (555)
Q Consensus 41 l~~~~~Q~~~i~~i~~-~--~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~ 117 (555)
..+++||++++..+.. | +..+|+.|||+|||.+...++... ++.++++.|+..++.|..+.+.++.......
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 5678999999999874 3 378999999999996655444432 3568899999999999998887765432222
Q ss_pred EEEEEEecC--------CCCCchhhHHHhhcC--------CCC--CCCceeEeecccccccchhHHHHHHHHHHHhhccc
Q 008735 118 RVGYSIRFD--------DRTSTSTRIKEALLD--------PYL--SRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKS 179 (555)
Q Consensus 118 ~vg~~~~~~--------~~~~~~~~i~~~~~~--------~~l--~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~ 179 (555)
...|..... ..+++...+...... ..+ ..+++||+||||.... . .+++++..
T Consensus 329 I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~----~fr~il~~---- 398 (732)
T TIGR00603 329 ICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--A----MFRRVLTI---- 398 (732)
T ss_pred EEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--H----HHHHHHHh----
Confidence 111111100 001111111000000 112 4689999999995432 1 12222211
Q ss_pred ccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCC--HH---HHHhhhCCCCeEEeC-------
Q 008735 180 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--AR---GFSEYFGCAKAVHVQ------- 247 (555)
Q Consensus 180 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~--~~---~~~~~~~~~~~~~~~------- 247 (555)
+ .....+++|||+- .+ .+..++| +.++...
T Consensus 399 --------------------------------l-----~a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~ 440 (732)
T TIGR00603 399 --------------------------------V-----QAHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKK 440 (732)
T ss_pred --------------------------------c-----CcCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhC
Confidence 1 2235699999992 11 2223333 3333321
Q ss_pred CccccceEE--EcCCCCC---ChH--------------HHHHH---HHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHH
Q 008735 248 GRQFPVEIL--YTLYPEP---DYL--------------DATLI---TIFQVHLDEAPGDILVFLTGQEEIESVERLVQER 305 (555)
Q Consensus 248 ~~~~~v~~~--~~~~~~~---~~~--------------~~~~~---~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~ 305 (555)
|-..+++.. +...... .|+ ..++. .++..+. ..+.++||||.+...++.+++.|
T Consensus 441 G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L--- 516 (732)
T TIGR00603 441 GFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKL--- 516 (732)
T ss_pred CccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHc---
Confidence 222222211 1111000 000 01112 2333332 34678999999999888887755
Q ss_pred hhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCC-CcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccc
Q 008735 306 LLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLL 384 (555)
Q Consensus 306 ~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~ 384 (555)
+ +..+||+++..+|.++++.|++| .+++||+|+++.+|||+|++++||. +++
T Consensus 517 ---------~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~--------~s~-------- 569 (732)
T TIGR00603 517 ---------G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISS-------- 569 (732)
T ss_pred ---------C--CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE--------eCC--------
Confidence 2 34579999999999999999875 7899999999999999999999998 662
Q ss_pred eeecCHHhHHHHhcccCCCCC-CEE-------EEccChhhH
Q 008735 385 VVPISKAQALQRSGRAGREGP-GKC-------FRLYPENEF 417 (555)
Q Consensus 385 ~~p~s~~~~~Qr~GRaGR~~~-G~~-------~~l~~~~~~ 417 (555)
.+.|..+|+||+||++|.++ |.+ |.|.+++..
T Consensus 570 -~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 570 -HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred -CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 12588999999999999984 343 777765433
No 87
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=1.5e-24 Score=224.09 Aligned_cols=308 Identities=18% Similarity=0.194 Sum_probs=217.9
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhcC------CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHH
Q 008735 30 RRQKILQQRKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTV 103 (555)
Q Consensus 30 ~~~~~~~~~~~l~~~~~Q~~~i~~i~~~------~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~ 103 (555)
...+.+.....+.+|..|+.++..|..+ -+=+++|.-|||||..+...++... ..|.++....|+..+|.|-
T Consensus 250 ~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai--~~G~Q~ALMAPTEILA~QH 327 (677)
T COG1200 250 ELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI--EAGYQAALMAPTEILAEQH 327 (677)
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH--HcCCeeEEeccHHHHHHHH
Confidence 3555566678889999999999999765 2558999999999965555554432 2366788999999999999
Q ss_pred HHHHHHHhCCccCCEEEEEEecCCCCCchhhHH--------------H-hhcCCCCCCCceeEeecccccccchhHHHHH
Q 008735 104 AKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK--------------E-ALLDPYLSRYSAIIVDEAHERTVHTDVLLGL 168 (555)
Q Consensus 104 ~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~--------------~-~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~ 168 (555)
+..+.+++. ..+..|++.+............. . +..+-.++++.++|+||=|..++.....|
T Consensus 328 ~~~~~~~l~-~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~QR~~L-- 404 (677)
T COG1200 328 YESLRKWLE-PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVHQRLAL-- 404 (677)
T ss_pred HHHHHHHhh-hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEeccccccHHHHHHH--
Confidence 999888776 44566776655322222222111 1 11223488999999999997766553321
Q ss_pred HHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCC-CceEEEeccCCCHHHHH-hhhCCCCeEEe
Q 008735 169 LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFA-PLKLIIMSASLDARGFS-EYFGCAKAVHV 246 (555)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~-~~~~~~~~~~~ 246 (555)
.+.+ . .+.++.||||+=+..++ ..||+-.+-.+
T Consensus 405 ----------------------------~~KG-----------------~~~Ph~LvMTATPIPRTLAlt~fgDldvS~I 439 (677)
T COG1200 405 ----------------------------REKG-----------------EQNPHVLVMTATPIPRTLALTAFGDLDVSII 439 (677)
T ss_pred ----------------------------HHhC-----------------CCCCcEEEEeCCCchHHHHHHHhccccchhh
Confidence 1111 3 46789999999666665 67777665555
Q ss_pred CCcc---ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH--------HHHHHHHHHHhhcCCCCCCC
Q 008735 247 QGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI--------ESVERLVQERLLQLPEASRK 315 (555)
Q Consensus 247 ~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~--------~~l~~~L~~~~~~~~~~~~~ 315 (555)
..-+ -|+........ ..+..+..+..... .+.++.|-||-.++. +++++.|...+ ++
T Consensus 440 dElP~GRkpI~T~~i~~~---~~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~-------~~ 507 (677)
T COG1200 440 DELPPGRKPITTVVIPHE---RRPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFL-------PE 507 (677)
T ss_pred ccCCCCCCceEEEEeccc---cHHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHc-------cc
Confidence 4333 45555554432 23333333333333 377899999987654 45555555433 37
Q ss_pred eEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHH
Q 008735 316 LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQ 395 (555)
Q Consensus 316 ~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Q 395 (555)
+.+..+||.|+.+|+.++++.|++|+.+|||||.+.|-|||+|+.++.|= +|++ ..-.++..|
T Consensus 508 ~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI--------e~AE---------RFGLaQLHQ 570 (677)
T COG1200 508 LKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI--------ENAE---------RFGLAQLHQ 570 (677)
T ss_pred ceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE--------echh---------hhhHHHHHH
Confidence 88999999999999999999999999999999999999999999999764 5543 345678999
Q ss_pred HhcccCCCC-CCEEEEccChhh
Q 008735 396 RSGRAGREG-PGKCFRLYPENE 416 (555)
Q Consensus 396 r~GRaGR~~-~G~~~~l~~~~~ 416 (555)
-.||+||.+ .+.|+.+|....
T Consensus 571 LRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 571 LRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred hccccCCCCcceEEEEEeCCCC
Confidence 999999998 999999996543
No 88
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.93 E-value=9.2e-25 Score=238.14 Aligned_cols=309 Identities=20% Similarity=0.187 Sum_probs=194.7
Q ss_pred CCCcHHHHHHHHHHHhcC---CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccC
Q 008735 40 SLPIASVEKRLVEEVRKN---DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 116 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~~---~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~ 116 (555)
...++++|+++++.+.++ +++++.|+||||||.....++.... ..+++++++.|++.++.|+.+++.+.++..+.
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l--~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~ 219 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL--AQGKQALVLVPEIALTPQMLARFRARFGAPVA 219 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEE
Confidence 446899999999999874 7899999999999955544443322 12568999999999999999999887764332
Q ss_pred CEEEEEEecCCCCCchhhHHHh---hc--------C-----CCCCCCceeEeecccccccchhHHHHH-HHHHHHhhccc
Q 008735 117 QRVGYSIRFDDRTSTSTRIKEA---LL--------D-----PYLSRYSAIIVDEAHERTVHTDVLLGL-LKKVQNARSKS 179 (555)
Q Consensus 117 ~~vg~~~~~~~~~~~~~~i~~~---~~--------~-----~~l~~~~~iIiDE~He~~~~~d~ll~~-l~~~~~~~~~~ 179 (555)
...| ..+...+...| .. . ..++++++|||||+|+.+...+....+ .+++...|
T Consensus 220 ~~~s-------~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~r--- 289 (679)
T PRK05580 220 VLHS-------GLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVR--- 289 (679)
T ss_pred EEEC-------CCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHH---
Confidence 2222 22222221111 00 0 126789999999999655433211100 11111111
Q ss_pred ccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhh-CCCCeEEeCCcc----ccce
Q 008735 180 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYF-GCAKAVHVQGRQ----FPVE 254 (555)
Q Consensus 180 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~-~~~~~~~~~~~~----~~v~ 254 (555)
....+.++|++|||++.+.+.... |....+....+. .| .
T Consensus 290 -----------------------------------a~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p-~ 333 (679)
T PRK05580 290 -----------------------------------AKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLP-E 333 (679)
T ss_pred -----------------------------------hhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCC-e
Confidence 001678999999999888765433 223333343332 11 1
Q ss_pred EEEcCCCC-------CChHHHHHHHHHHHHhcCCCCcEEEEcCCH-----------------------------------
Q 008735 255 ILYTLYPE-------PDYLDATLITIFQVHLDEAPGDILVFLTGQ----------------------------------- 292 (555)
Q Consensus 255 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~----------------------------------- 292 (555)
+....... .......+..+.+.. ..+.++|||+|++
T Consensus 334 v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~C 411 (679)
T PRK05580 334 VEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRC 411 (679)
T ss_pred EEEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEEC
Confidence 11111100 011122333333222 2256899998864
Q ss_pred -------------------------HHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCH--HHHHhhcCcCCCCCcEEE
Q 008735 293 -------------------------EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPS--EQQMRVFAPAAAGFRKVI 345 (555)
Q Consensus 293 -------------------------~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~--~~r~~i~~~f~~g~~~vl 345 (555)
..++++++.|.+.++ +..+..+|+++.. ++++++++.|++|+.+||
T Consensus 412 h~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp-------~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~IL 484 (679)
T PRK05580 412 HHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFP-------EARILRIDRDTTRRKGALEQLLAQFARGEADIL 484 (679)
T ss_pred CCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCC-------CCcEEEEeccccccchhHHHHHHHHhcCCCCEE
Confidence 145667777766543 6778999999874 578999999999999999
Q ss_pred EecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEc
Q 008735 346 LATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 411 (555)
Q Consensus 346 vaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l 411 (555)
|+|+++++|+|+|+|+.|+-.. .|...+...+.........+.|++|||||.+ .|.++..
T Consensus 485 VgT~~iakG~d~p~v~lV~il~------aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 485 IGTQMLAKGHDFPNVTLVGVLD------ADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred EEChhhccCCCCCCcCEEEEEc------CchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 9999999999999999885311 4433333233223345678999999999977 8998854
No 89
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=4.5e-24 Score=232.19 Aligned_cols=310 Identities=21% Similarity=0.266 Sum_probs=230.5
Q ss_pred CChhHHHHHHHhhcCCCcHHHHHHHHHHHhcC----C--eEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHH
Q 008735 26 DSSSRRQKILQQRKSLPIASVEKRLVEEVRKN----D--ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99 (555)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~----~--~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l 99 (555)
.+...+++.......+.-|+=|..+|+.+.++ + +=+|||.-|-|||-++.-++..... .|++|.+++||..|
T Consensus 578 ~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~--~GKQVAvLVPTTlL 655 (1139)
T COG1197 578 PPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM--DGKQVAVLVPTTLL 655 (1139)
T ss_pred CCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc--CCCeEEEEcccHHh
Confidence 34556777788888888899999999988753 3 6699999999999887777766543 36889999999999
Q ss_pred HHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhHH--------------Hhhc-CCCCCCCceeEeecccccccchhH
Q 008735 100 AVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDV 164 (555)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~--------------~~~~-~~~l~~~~~iIiDE~He~~~~~d~ 164 (555)
|+|-++.+.+.+. .....|+...++.+.......+. .++. +-.+.+++++||||-|..++....
T Consensus 656 A~QHy~tFkeRF~-~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KE 734 (1139)
T COG1197 656 AQQHYETFKERFA-GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKE 734 (1139)
T ss_pred HHHHHHHHHHHhc-CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCccHHH
Confidence 9999999988775 34456665555443322222121 2222 345789999999999988887755
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHH-hhhCC--C
Q 008735 165 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS-EYFGC--A 241 (555)
Q Consensus 165 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~-~~~~~--~ 241 (555)
-+.-+| .++-++-||||+=+..+. ...|- -
T Consensus 735 kLK~Lr-----------------------------------------------~~VDvLTLSATPIPRTL~Msm~GiRdl 767 (1139)
T COG1197 735 KLKELR-----------------------------------------------ANVDVLTLSATPIPRTLNMSLSGIRDL 767 (1139)
T ss_pred HHHHHh-----------------------------------------------ccCcEEEeeCCCCcchHHHHHhcchhh
Confidence 554443 778899999999444433 33332 2
Q ss_pred CeEEe-CCccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q 008735 242 KAVHV-QGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP 320 (555)
Q Consensus 242 ~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~ 320 (555)
.++.. +.+.+|++.+..+....-..+.....+ ..+|++-.-.|..+++++++..|++..+ ...+..
T Consensus 768 SvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl------~RgGQvfYv~NrV~~Ie~~~~~L~~LVP-------EarI~v 834 (1139)
T COG1197 768 SVIATPPEDRLPVKTFVSEYDDLLIREAILREL------LRGGQVFYVHNRVESIEKKAERLRELVP-------EARIAV 834 (1139)
T ss_pred hhccCCCCCCcceEEEEecCChHHHHHHHHHHH------hcCCEEEEEecchhhHHHHHHHHHHhCC-------ceEEEE
Confidence 23333 244567777766554332223322222 2389999999999999999999999854 788999
Q ss_pred ecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhccc
Q 008735 321 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRA 400 (555)
Q Consensus 321 lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRa 400 (555)
.||.|+..+-+.++..|.+|+.+|||||.+.|+|||||+++.+|- .+. --.-.++..|..||+
T Consensus 835 aHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII--------e~A---------D~fGLsQLyQLRGRV 897 (1139)
T COG1197 835 AHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII--------ERA---------DKFGLAQLYQLRGRV 897 (1139)
T ss_pred eecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE--------ecc---------ccccHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999882 111 124467899999999
Q ss_pred CCCC-CCEEEEccChh
Q 008735 401 GREG-PGKCFRLYPEN 415 (555)
Q Consensus 401 GR~~-~G~~~~l~~~~ 415 (555)
||.. .+.||.+|++.
T Consensus 898 GRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 898 GRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CCccceEEEEEeecCc
Confidence 9999 99999999753
No 90
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.93 E-value=4e-24 Score=203.22 Aligned_cols=311 Identities=19% Similarity=0.234 Sum_probs=209.4
Q ss_pred hhHHHHHHHhhcCC-CcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhccccCCCcEEEEeCccHHHHHHHH
Q 008735 28 SSRRQKILQQRKSL-PIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVA 104 (555)
Q Consensus 28 ~~~~~~~~~~~~~l-~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~ 104 (555)
+.....+++....| ..+|.|.+++.+.+.|++++++.|||.||| |++|.++.. +..+++.|...+...+.
T Consensus 79 s~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~ad-------g~alvi~plislmedqi 151 (695)
T KOG0353|consen 79 SDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCAD-------GFALVICPLISLMEDQI 151 (695)
T ss_pred chHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcC-------CceEeechhHHHHHHHH
Confidence 44555666655443 456779999999999999999999999999 667666543 35778889888876655
Q ss_pred HHHHHHhCCccCCE-----------EEE-EEecCCC----CCchhhHH---Hhhc----CCCCCCCceeEeecccccccc
Q 008735 105 KRVAEESGVELGQR-----------VGY-SIRFDDR----TSTSTRIK---EALL----DPYLSRYSAIIVDEAHERTVH 161 (555)
Q Consensus 105 ~~~~~~~~~~~~~~-----------vg~-~~~~~~~----~~~~~~i~---~~~~----~~~l~~~~~iIiDE~He~~~~ 161 (555)
-.+.. ++...... |.- ....++. --++.++. .++. .-....+.+|-|||+|+-+.+
T Consensus 152 l~lkq-lgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqw 230 (695)
T KOG0353|consen 152 LQLKQ-LGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQW 230 (695)
T ss_pred HHHHH-hCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhh
Confidence 44432 22110000 000 0000000 00111111 1111 111345789999999986554
Q ss_pred hhH------HHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH---
Q 008735 162 TDV------LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--- 232 (555)
Q Consensus 162 ~d~------ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--- 232 (555)
..- .+++|++.. ++..+++++||....
T Consensus 231 ghdfr~dy~~l~ilkrqf--------------------------------------------~~~~iigltatatn~vl~ 266 (695)
T KOG0353|consen 231 GHDFRPDYKALGILKRQF--------------------------------------------KGAPIIGLTATATNHVLD 266 (695)
T ss_pred CcccCcchHHHHHHHHhC--------------------------------------------CCCceeeeehhhhcchhh
Confidence 432 344444422 788999999998433
Q ss_pred HHHhhhCCCCeEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHhcC-CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCC
Q 008735 233 GFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDE-APGDILVFLTGQEEIESVERLVQERLLQLPE 311 (555)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~ 311 (555)
+..+.+.-...+.+.......+..|.....+...+...+.+....... .+...||||-+++++++++..|...
T Consensus 267 d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~------ 340 (695)
T KOG0353|consen 267 DAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH------ 340 (695)
T ss_pred HHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc------
Confidence 233444333333333333334455555545555555555555544433 3456899999999999999999987
Q ss_pred CCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHH
Q 008735 312 ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKA 391 (555)
Q Consensus 312 ~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~ 391 (555)
++....||+.|.++++.-+-+..-.|++.|||||-.+.+|||-|+|++||+ .. .|.|..
T Consensus 341 ---gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvih--------hs----------l~ksie 399 (695)
T KOG0353|consen 341 ---GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH--------HS----------LPKSIE 399 (695)
T ss_pred ---CccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEe--------cc----------cchhHH
Confidence 899999999999999999999999999999999999999999999999997 22 588999
Q ss_pred hHHH-------------------------------------------HhcccCCCC-CCEEEEccChhhH
Q 008735 392 QALQ-------------------------------------------RSGRAGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 392 ~~~Q-------------------------------------------r~GRaGR~~-~G~~~~l~~~~~~ 417 (555)
+|.| ..|||||.+ +..|+..|.-.+.
T Consensus 400 nyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 400 NYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 9999 889999999 8899988865443
No 91
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=4.3e-24 Score=225.73 Aligned_cols=164 Identities=20% Similarity=0.199 Sum_probs=118.4
Q ss_pred eEEEeccCCC--HHHHHhhhCCCCeEEeCCccccceEEEcC---CCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTL---YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++.+||||.. .+++.++++- +++.++.........+.. ....+........+...+ ..+.++||||+|.+.+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l-~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~--~~~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGL-PVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELH--AQGRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCC-CeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHH
Confidence 6789999994 3457777754 355555433222111111 112222333333222222 1256799999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccC---CeE-----EEEeCC
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP---GIK-----YVIDPG 367 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip---~v~-----~VId~g 367 (555)
+.+++.|.+. ++.+..+||++...++..+...+. ...|+||||++++|+||+ +|. +||+
T Consensus 487 e~L~~~L~~~---------gi~~~~Lhg~~~~rE~~ii~~ag~--~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~-- 553 (656)
T PRK12898 487 ERLSALLREA---------GLPHQVLNAKQDAEEAAIVARAGQ--RGRITVATNMAGRGTDIKLEPGVAARGGLHVIL-- 553 (656)
T ss_pred HHHHHHHHHC---------CCCEEEeeCCcHHHHHHHHHHcCC--CCcEEEEccchhcccCcCCccchhhcCCCEEEE--
Confidence 9999999886 899999999987666665555544 446999999999999999 776 9999
Q ss_pred cccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhh
Q 008735 368 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 416 (555)
Q Consensus 368 ~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 416 (555)
|| .|.+...|.||+|||||.| +|.++.+++.++
T Consensus 554 ------~d----------~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 554 ------TE----------RHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred ------cC----------CCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 77 6899999999999999999 999999997654
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=2.1e-24 Score=227.18 Aligned_cols=285 Identities=20% Similarity=0.165 Sum_probs=178.6
Q ss_pred EEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhHHHhh-
Q 008735 61 IIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEAL- 139 (555)
Q Consensus 61 ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~~~- 139 (555)
++.||||||||.....++.... ..+++++++.|+..++.|+.+++.+.++..+... .+..+...+...|.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l--~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vl-------hs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL--ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVL-------HSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEE-------ECCCCHHHHHHHHHH
Confidence 4689999999965544443221 2356899999999999999999988776433221 22223322222111
Q ss_pred --c-------------CCCCCCCceeEeecccccccchhHHHHH-HHHHHHhhcccccCCCCCCCCCCcchhhhccCCCC
Q 008735 140 --L-------------DPYLSRYSAIIVDEAHERTVHTDVLLGL-LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDT 203 (555)
Q Consensus 140 --~-------------~~~l~~~~~iIiDE~He~~~~~d~ll~~-l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~ 203 (555)
. -..+.++++|||||.|+.+...+....+ .+++...|.
T Consensus 72 ~~~g~~~IVVGTrsalf~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra-------------------------- 125 (505)
T TIGR00595 72 VKNGEILVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRA-------------------------- 125 (505)
T ss_pred HHcCCCCEEECChHHHcCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHH--------------------------
Confidence 0 0126789999999999755544322111 111111110
Q ss_pred cccchhhhccccCCCCceEEEeccCCCHHHHHhhhCC-CCeEEeCCc----cccceEEEcCCCC----CChHHHHHHHHH
Q 008735 204 NGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGC-AKAVHVQGR----QFPVEILYTLYPE----PDYLDATLITIF 274 (555)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~-~~~~~~~~~----~~~v~~~~~~~~~----~~~~~~~~~~~~ 274 (555)
...+.++|++|||+..+.+.....+ ...+....+ ..| .+....... .......+..+.
T Consensus 126 ------------~~~~~~vil~SATPsles~~~~~~g~~~~~~l~~r~~~~~~p-~v~vid~~~~~~~~~ls~~l~~~i~ 192 (505)
T TIGR00595 126 ------------KKFNCPVVLGSATPSLESYHNAKQKAYRLLVLTRRVSGRKPP-EVKLIDMRKEPRQSFLSPELITAIE 192 (505)
T ss_pred ------------HhcCCCEEEEeCCCCHHHHHHHhcCCeEEeechhhhcCCCCC-eEEEEecccccccCCccHHHHHHHH
Confidence 0067899999999988877654332 122222221 111 111111111 112223333333
Q ss_pred HHHhcCCCCcEEEEcCCHHH------------------------------------------------------------
Q 008735 275 QVHLDEAPGDILVFLTGQEE------------------------------------------------------------ 294 (555)
Q Consensus 275 ~~~~~~~~~~iLVF~~t~~~------------------------------------------------------------ 294 (555)
+... .++++|||+|++.-
T Consensus 193 ~~l~--~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~G 270 (505)
T TIGR00595 193 QTLA--AGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYG 270 (505)
T ss_pred HHHH--cCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeeccc
Confidence 3332 26789999888632
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHH--HhhcCcCCCCCcEEEEecCccccccccCCeEEEE--eCCccc
Q 008735 295 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ--MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVI--DPGFVK 370 (555)
Q Consensus 295 ~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r--~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VI--d~g~~~ 370 (555)
++++.+.|.+.++ +..+..+|++++..++ .++++.|++|+.+|||+|+++++|+|+|+|+.|+ |
T Consensus 271 te~~~e~l~~~fp-------~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~----- 338 (505)
T TIGR00595 271 TEQVEEELAKLFP-------GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD----- 338 (505)
T ss_pred HHHHHHHHHhhCC-------CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc-----
Confidence 5777777777643 6789999999987766 8899999999999999999999999999999875 5
Q ss_pred ceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEE
Q 008735 371 ARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 410 (555)
Q Consensus 371 ~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~ 410 (555)
+|...+...+.........+.|++|||||.+ .|.++.
T Consensus 339 ---aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 339 ---ADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred ---CcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 5533333333223345678999999999977 898874
No 93
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.1e-23 Score=227.24 Aligned_cols=164 Identities=22% Similarity=0.281 Sum_probs=120.9
Q ss_pred eEEEeccCCC--HHHHHhhhCCCCeEEeCCccccceEEEcCC---CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTLY---PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++.+||.|.. .++|.+.+ +.+++.++.........+... ...+.....+..+...+ ..+.++||||+|.+.+
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y-~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~--~~~~pvLIf~~t~~~s 441 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVY-NMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERH--ETGRPVLIGTGSIEQS 441 (790)
T ss_pred HHhccCCCChHHHHHHHHHh-CCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHH
Confidence 5778888883 23455544 346667665432111111111 11122222233332222 2477899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCcccccccc---CCeE-----EEEeCC
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTI---PGIK-----YVIDPG 367 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdi---p~v~-----~VId~g 367 (555)
+.++..|.+. ++.+..+||++..+++..+...++.| +|+||||+++||+|| |+|. +||+
T Consensus 442 e~l~~~L~~~---------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~-- 508 (790)
T PRK09200 442 ETFSKLLDEA---------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIG-- 508 (790)
T ss_pred HHHHHHHHHC---------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEe--
Confidence 9999999886 88999999999999998888888766 799999999999999 7998 9999
Q ss_pred cccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhh
Q 008735 368 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 416 (555)
Q Consensus 368 ~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 416 (555)
|| .|.+...|.||+|||||.| +|.++.+++.++
T Consensus 509 ------~d----------~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 509 ------TE----------RMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred ------cc----------CCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 77 6899999999999999999 999998886543
No 94
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.92 E-value=3.1e-23 Score=221.75 Aligned_cols=163 Identities=22% Similarity=0.269 Sum_probs=119.8
Q ss_pred eEEEeccCCC--HHHHHhhhCCCCeEEeCCccccceEEEcCC---CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTLY---PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++.+||.|.. .++|.+.++ .+++.+|.........+... .........+..+...+ ..+.++||||+|++.+
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY~-l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~s 437 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETYS-LSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYH--ETGQPVLLITGSVEMS 437 (762)
T ss_pred hhcccCCCChhHHHHHHHHhC-CCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHh--hCCCCEEEEECcHHHH
Confidence 6788999983 355666553 56777765432222221111 11122333333333333 3467899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccC---------CeEEEEeC
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP---------GIKYVIDP 366 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip---------~v~~VId~ 366 (555)
+.++..|.+. ++.+..+||.+..+++..+..+++.| .|+||||+++||+||| ++.+|++
T Consensus 438 e~ls~~L~~~---------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit- 505 (762)
T TIGR03714 438 EIYSELLLRE---------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGT- 505 (762)
T ss_pred HHHHHHHHHC---------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEe-
Confidence 9999999886 88899999999999998888888777 7999999999999999 9999998
Q ss_pred CcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhh
Q 008735 367 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 416 (555)
Q Consensus 367 g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 416 (555)
|+ .|....+ .||+|||||.| +|.++.+++.++
T Consensus 506 -------~~----------~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 506 -------ER----------MENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred -------cC----------CCCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 77 3444444 99999999999 999998887543
No 95
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.92 E-value=8.3e-24 Score=240.52 Aligned_cols=286 Identities=17% Similarity=0.226 Sum_probs=175.4
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHH
Q 008735 31 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 110 (555)
Q Consensus 31 ~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~ 110 (555)
+.+...+.....|+++|+++++.+..|++++++||||||||+.+..++... ...+.+++++.|++.++.|+.+.+...
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l--~~~g~~vLIL~PTreLa~Qi~~~l~~l 144 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFL--AKKGKRCYIILPTTLLVIQVAEKISSL 144 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEeCHHHHHHHHHHHHHHH
Confidence 333444556678999999999999999999999999999996332222211 123668999999999999999887766
Q ss_pred hCCccCC---EEEEEEec------------------CCCCCchhhHHHhhcCCCCC-CCceeEeecccccccchhHHHHH
Q 008735 111 SGVELGQ---RVGYSIRF------------------DDRTSTSTRIKEALLDPYLS-RYSAIIVDEAHERTVHTDVLLGL 168 (555)
Q Consensus 111 ~~~~~~~---~vg~~~~~------------------~~~~~~~~~i~~~~~~~~l~-~~~~iIiDE~He~~~~~d~ll~~ 168 (555)
... .+. .+++.... +..+.+..++...... +. +++++|+||||+.--..
T Consensus 145 ~~~-~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~~~~~iVvDEaD~~L~~~------ 215 (1171)
T TIGR01054 145 AEK-AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGPKFDFIFVDDVDALLKAS------ 215 (1171)
T ss_pred HHh-cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcCCCCEEEEeChHhhhhcc------
Confidence 531 111 12211110 0011122222222111 22 79999999998421110
Q ss_pred HHHHHHhhcccccCCCCCCCCCCcchhhhc-cCCCCc-ccch----------------------hhhccccCCCCc--eE
Q 008735 169 LKKVQNARSKSADGHSNGNNNNENSDMILD-RGNDTN-GINT----------------------LKQCQGRKFAPL--KL 222 (555)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~-~~~~~~-~~~~----------------------l~~~~~~~~~~~--~i 222 (555)
...|.++. .+|.++ ++.+ ++.+. .+. .+
T Consensus 216 ----------------------k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~q~~l 269 (1171)
T TIGR01054 216 ----------------------KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIP----GKKRGCL 269 (1171)
T ss_pred ----------------------ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhh----hccCcEE
Confidence 00112221 233221 1111 11221 222 36
Q ss_pred EEeccCC-CHHHHHhhhCCCCeEEeCCcc---ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCH---HHH
Q 008735 223 IIMSASL-DARGFSEYFGCAKAVHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ---EEI 295 (555)
Q Consensus 223 i~~SAT~-~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~---~~~ 295 (555)
+++|||. +...-..++...-.+.+.... ..+...|..... .... +..+.... ++++||||+++ +.+
T Consensus 270 i~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~----L~~ll~~l-~~~~IVFv~t~~~~~~a 342 (1171)
T TIGR01054 270 IVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDED--LKET----LLEIVKKL-GTGGIVYVSIDYGKEKA 342 (1171)
T ss_pred EEEeCCCCccccHHHHcccccceEecCccccccceEEEEEeccc--HHHH----HHHHHHHc-CCCEEEEEeccccHHHH
Confidence 7789995 332222344333334443322 223333432211 1222 22222222 45799999999 999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEe----cCccccccccCC-eEEEEeCCccc
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVK 370 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlva----T~~~e~Gvdip~-v~~VId~g~~~ 370 (555)
+++++.|.+. ++.+..+||+++. .+++.|++|+.+|||| ||++++|||+|+ |++||++|..+
T Consensus 343 ~~l~~~L~~~---------g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 343 EEIAEFLENH---------GVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHHHHhC---------CceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 9999999876 8999999999973 6889999999999999 599999999999 89999999887
Q ss_pred cee
Q 008735 371 ARL 373 (555)
Q Consensus 371 ~~~ 373 (555)
.+.
T Consensus 410 ~~~ 412 (1171)
T TIGR01054 410 FKV 412 (1171)
T ss_pred EEE
Confidence 653
No 96
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.91 E-value=3.3e-23 Score=195.20 Aligned_cols=301 Identities=19% Similarity=0.247 Sum_probs=195.8
Q ss_pred HHHhhcCCCcHHHHH----HHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 34 ILQQRKSLPIASVEK----RLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 34 ~~~~~~~l~~~~~Q~----~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
.+...+.|.+ .|+ .+++.+.+.++++|.|-||+|||..+-+.+.... +.|.+|.+..|+...+.+++.++.+
T Consensus 91 ~L~W~G~Ls~--~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al--~~G~~vciASPRvDVclEl~~Rlk~ 166 (441)
T COG4098 91 VLQWKGTLSP--GQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL--NQGGRVCIASPRVDVCLELYPRLKQ 166 (441)
T ss_pred eeeeccccCh--hHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH--hcCCeEEEecCcccchHHHHHHHHH
Confidence 5666676644 455 4567778899999999999999955544443321 2377899999999999999999887
Q ss_pred HhC-CccCCEEEEEEecCC---CCCchhhHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCC
Q 008735 110 ESG-VELGQRVGYSIRFDD---RTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSN 185 (555)
Q Consensus 110 ~~~-~~~~~~vg~~~~~~~---~~~~~~~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~ 185 (555)
.+. ..+....|-...+.. .+.+.- .++ .+-..++++||||++......|..|.+.-+...+
T Consensus 167 aF~~~~I~~Lyg~S~~~fr~plvVaTtH---QLl--rFk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark---------- 231 (441)
T COG4098 167 AFSNCDIDLLYGDSDSYFRAPLVVATTH---QLL--RFKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARK---------- 231 (441)
T ss_pred hhccCCeeeEecCCchhccccEEEEehH---HHH--HHHhhccEEEEeccccccccCCHHHHHHHHHhhc----------
Confidence 765 433333321111000 001111 111 1234589999999998887777776654332221
Q ss_pred CCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhh-CCCCeEEeCCccc----cceEEEcCC
Q 008735 186 GNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYF-GCAKAVHVQGRQF----PVEILYTLY 260 (555)
Q Consensus 186 ~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~-~~~~~~~~~~~~~----~v~~~~~~~ 260 (555)
..--.|.||||.+.+-..+.. ++...+.++.|.+ |+..+.-..
T Consensus 232 --------------------------------~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~ 279 (441)
T COG4098 232 --------------------------------KEGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIG 279 (441)
T ss_pred --------------------------------ccCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEec
Confidence 444689999999655444433 2333455554432 222221111
Q ss_pred CCCC-----hHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcC
Q 008735 261 PEPD-----YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFA 335 (555)
Q Consensus 261 ~~~~-----~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~ 335 (555)
+-.. .+..++...++.... .+.++|||+|+....+++++.|+..++ ...+...|+. ...|.+..+
T Consensus 280 ~~~k~l~r~kl~~kl~~~lekq~~-~~~P~liF~p~I~~~eq~a~~lk~~~~-------~~~i~~Vhs~--d~~R~EkV~ 349 (441)
T COG4098 280 NWNKKLQRNKLPLKLKRWLEKQRK-TGRPVLIFFPEIETMEQVAAALKKKLP-------KETIASVHSE--DQHRKEKVE 349 (441)
T ss_pred cHHHHhhhccCCHHHHHHHHHHHh-cCCcEEEEecchHHHHHHHHHHHhhCC-------ccceeeeecc--CccHHHHHH
Confidence 1111 122233333333332 267899999999999999999977643 4566777876 356888999
Q ss_pred cCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEc
Q 008735 336 PAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRL 411 (555)
Q Consensus 336 ~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l 411 (555)
.|++|+.++|++|.++|+||++|+|+++| .+.... -.+.+..+|.+||+||.- .|..+-+
T Consensus 350 ~fR~G~~~lLiTTTILERGVTfp~vdV~V---------lgaeh~-------vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 350 AFRDGKITLLITTTILERGVTFPNVDVFV---------LGAEHR-------VFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred HHHcCceEEEEEeehhhcccccccceEEE---------ecCCcc-------cccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 99999999999999999999999999988 443322 357789999999999976 5654433
No 97
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.91 E-value=5.4e-23 Score=214.01 Aligned_cols=287 Identities=17% Similarity=0.178 Sum_probs=185.9
Q ss_pred hhcCCCcHHHHHHHHHHHhc----CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhC
Q 008735 37 QRKSLPIASVEKRLVEEVRK----NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 112 (555)
Q Consensus 37 ~~~~l~~~~~Q~~~i~~i~~----~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~ 112 (555)
......+++||+++++++.+ ++..+++.|||+|||.+...++.... ..++++.|++.++.|..+.+.....
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~-----~~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK-----RSTLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc-----CCEEEEECcHHHHHHHHHHHHHhcC
Confidence 44566789999999999998 89999999999999988777776653 3499999999999999887777665
Q ss_pred Cc--cCCEEEEEEecCC-CCCc---hhhHHH-hhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCC
Q 008735 113 VE--LGQRVGYSIRFDD-RTST---STRIKE-ALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSN 185 (555)
Q Consensus 113 ~~--~~~~vg~~~~~~~-~~~~---~~~i~~-~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~ 185 (555)
.. .|..-|....... .+.. .+.... .+.......+++||+||||+........ +....
T Consensus 106 ~~~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~------~~~~~--------- 170 (442)
T COG1061 106 LNDEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR------ILELL--------- 170 (442)
T ss_pred CccccceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH------HHHhh---------
Confidence 43 3332222222111 1111 111111 1222223479999999999655433211 11111
Q ss_pred CCCCCCcchhhhccCCCCcccchhhhccccCCCCce-EEEeccCC---CHHH---HHhhhCCCCeEEeC-------Cccc
Q 008735 186 GNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLK-LIIMSASL---DARG---FSEYFGCAKAVHVQ-------GRQF 251 (555)
Q Consensus 186 ~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~-ii~~SAT~---~~~~---~~~~~~~~~~~~~~-------~~~~ 251 (555)
.... +++||||+ |... +..++| ..++.+. +-..
T Consensus 171 --------------------------------~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~La 217 (442)
T COG1061 171 --------------------------------SAAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLA 217 (442)
T ss_pred --------------------------------hcccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCcc
Confidence 2233 89999997 2112 223333 2223222 1112
Q ss_pred cceEEEcCCCC-----------CChH-----------------------HHHHHHHHHHHhcC-CCCcEEEEcCCHHHHH
Q 008735 252 PVEILYTLYPE-----------PDYL-----------------------DATLITIFQVHLDE-APGDILVFLTGQEEIE 296 (555)
Q Consensus 252 ~v~~~~~~~~~-----------~~~~-----------------------~~~~~~~~~~~~~~-~~~~iLVF~~t~~~~~ 296 (555)
|.......... .... ......+..+.... .+.+++||+.+..+++
T Consensus 218 p~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~ 297 (442)
T COG1061 218 PYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAY 297 (442)
T ss_pred ceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHH
Confidence 22211111100 0000 01111112222222 3668999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecC
Q 008735 297 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 376 (555)
Q Consensus 297 ~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~ 376 (555)
.++..+... +. +..+.+..+..+|..+++.|+.|.+++||++.++..|+|+|+++++|-
T Consensus 298 ~i~~~~~~~---------~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~----------- 356 (442)
T COG1061 298 EIAKLFLAP---------GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII----------- 356 (442)
T ss_pred HHHHHhcCC---------Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE-----------
Confidence 999887653 44 788899999999999999999999999999999999999999999995
Q ss_pred CCCccccceeecCHHhHHHHhcccCCCC
Q 008735 377 VKGMESLLVVPISKAQALQRSGRAGREG 404 (555)
Q Consensus 377 ~~~~~~l~~~p~s~~~~~Qr~GRaGR~~ 404 (555)
.....|...|.||+||.-|..
T Consensus 357 -------~~~t~S~~~~~Q~lGR~LR~~ 377 (442)
T COG1061 357 -------LRPTGSRRLFIQRLGRGLRPA 377 (442)
T ss_pred -------eCCCCcHHHHHHHhhhhccCC
Confidence 224788999999999999944
No 98
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.90 E-value=1.7e-22 Score=214.77 Aligned_cols=163 Identities=23% Similarity=0.210 Sum_probs=122.3
Q ss_pred eEEEeccCCC--HHHHHhhhCCCCeEEeCCccccceEEEcCCC---CCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTLYP---EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++.+||.|.. .++|.+.++ .+++.++.........+.... ..+.....+..+...+. .+.++||||+|...+
T Consensus 342 kl~GmTGTa~te~~E~~~iY~-l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~--~grpvLV~t~si~~s 418 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYN-LEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHA--KGQPVLVGTTSVEKS 418 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhC-CCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHH
Confidence 5788898883 345555554 456667654322222211111 12233344444444443 377899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCC-------eEEEEeCCc
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG-------IKYVIDPGF 368 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~-------v~~VId~g~ 368 (555)
+.+++.|.+. ++....+||. +.+|+..+..|..+...|+||||+|+||+||+. ..+||+
T Consensus 419 e~ls~~L~~~---------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~--- 484 (745)
T TIGR00963 419 ELLSNLLKER---------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIG--- 484 (745)
T ss_pred HHHHHHHHHc---------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEe---
Confidence 9999999986 8888999998 778888999999999999999999999999998 459998
Q ss_pred ccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChh
Q 008735 369 VKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 415 (555)
Q Consensus 369 ~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 415 (555)
|+ .|.|...+.||+|||||.| +|.+..+.+.+
T Consensus 485 -----t~----------~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 485 -----TE----------RHESRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred -----cC----------CCCcHHHHHHHhccccCCCCCcceEEEEecc
Confidence 66 6899999999999999999 99988777544
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.88 E-value=2.7e-21 Score=218.55 Aligned_cols=112 Identities=21% Similarity=0.293 Sum_probs=88.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCc-EEEEecCccccccccCC
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR-KVILATNIAETSVTIPG 359 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~-~vlvaT~~~e~Gvdip~ 359 (555)
.++++||||.++++|+.+++.|.+.+...........+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 3589999999999999999999876543211222335666888875 46779999999876 79999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCC--CE-EEEcc
Q 008735 360 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP--GK-CFRLY 412 (555)
Q Consensus 360 v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~--G~-~~~l~ 412 (555)
|.+||. ++ .+.|...|+||+||+.|..+ |+ .+.++
T Consensus 775 v~~vVf--------~r----------pvkS~~lf~QmIGRgtR~~~~~~K~~f~I~ 812 (1123)
T PRK11448 775 ICNLVF--------LR----------RVRSRILYEQMLGRATRLCPEIGKTHFRIF 812 (1123)
T ss_pred ccEEEE--------ec----------CCCCHHHHHHHHhhhccCCccCCCceEEEE
Confidence 999995 44 56889999999999999875 44 44444
No 100
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.85 E-value=2.6e-20 Score=195.85 Aligned_cols=330 Identities=20% Similarity=0.256 Sum_probs=206.5
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCC-cc--CC
Q 008735 41 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGV-EL--GQ 117 (555)
Q Consensus 41 l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~-~~--~~ 117 (555)
+.|..+|.+.++.+..++..+|+|||.+|||++-+.++-..........++++.|+++++.|+...+...+.. .+ |.
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 6788999999999999999999999999999776666655555555678999999999999998877665521 11 11
Q ss_pred -EEE-----EEEe---cCCCCCchhhHHHhhcC-----CCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCC
Q 008735 118 -RVG-----YSIR---FDDRTSTSTRIKEALLD-----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 183 (555)
Q Consensus 118 -~vg-----~~~~---~~~~~~~~~~i~~~~~~-----~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~ 183 (555)
..| |... .....+.+.....++.. .+...++++|+||+|..+..-+-++- .
T Consensus 590 sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~---E------------ 654 (1330)
T KOG0949|consen 590 SLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLW---E------------ 654 (1330)
T ss_pred hhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHH---H------------
Confidence 111 1111 00111222333334433 24678899999999965443332211 0
Q ss_pred CCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhCC--------CCeEEeCCccccce
Q 008735 184 SNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGC--------AKAVHVQGRQFPVE 254 (555)
Q Consensus 184 ~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~--------~~~~~~~~~~~~v~ 254 (555)
.++.- ..+.++++|||+ |++.+..|++. +..+....+.....
T Consensus 655 -----------qll~l------------------i~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~ 705 (1330)
T KOG0949|consen 655 -----------QLLLL------------------IPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELG 705 (1330)
T ss_pred -----------HHHHh------------------cCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhc
Confidence 00000 578899999999 89999999751 11111111100000
Q ss_pred EE-----------E------------------cCC-----------------------------CC--------------
Q 008735 255 IL-----------Y------------------TLY-----------------------------PE-------------- 262 (555)
Q Consensus 255 ~~-----------~------------------~~~-----------------------------~~-------------- 262 (555)
.. | ... +.
T Consensus 706 l~v~n~~~e~n~~yl~~~falgerai~~~~~~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~ 785 (1330)
T KOG0949|consen 706 LVVYNRMNEGNAYYLLKLFALGERAIIVSLRELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVG 785 (1330)
T ss_pred ceeeccCCCCcchHHHHHHhhchhhccchhhccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHH
Confidence 00 0 000 00
Q ss_pred ---------------------------------------------CChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHH
Q 008735 263 ---------------------------------------------PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIES 297 (555)
Q Consensus 263 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~ 297 (555)
.+++...+..++........-+.++|--.|..|+.
T Consensus 786 e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcek 865 (1330)
T KOG0949|consen 786 EYGRHLLELFQGFIEDSLTQKQIKYVYKLQTKEVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEK 865 (1330)
T ss_pred HHHHHHHHHHHHhhhcChHHHHHHHHHHhhhhhhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHH
Confidence 00000001112222233445678999999988888
Q ss_pred HHHHHHHHhhc-------------------------------------------C-------------------------
Q 008735 298 VERLVQERLLQ-------------------------------------------L------------------------- 309 (555)
Q Consensus 298 l~~~L~~~~~~-------------------------------------------~------------------------- 309 (555)
+|..+.+.+.. .
T Consensus 866 la~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~ 945 (1330)
T KOG0949|consen 866 LALKVHRQLESMEMEEKKDKLMEKMKKEAKRARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEE 945 (1330)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhh
Confidence 77665544320 0
Q ss_pred ----CCCCC-------CeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCC
Q 008735 310 ----PEASR-------KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVK 378 (555)
Q Consensus 310 ----~~~~~-------~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~ 378 (555)
..+.+ --.+..+|+||...+|..|+-.|+.|...|++||.+++.|||.|..++|.- -|.
T Consensus 946 ~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~--------gDs-- 1015 (1330)
T KOG0949|consen 946 ETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFA--------GDS-- 1015 (1330)
T ss_pred hccccCCCcHHHHHHHHhcccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEe--------ccc--
Confidence 00000 014778899999999999999999999999999999999999998888874 221
Q ss_pred CccccceeecCHHhHHHHhcccCCCC---CCEEEEc-cChhhHhcccCCCCCccccc
Q 008735 379 GMESLLVVPISKAQALQRSGRAGREG---PGKCFRL-YPENEFDKLEDSTKPEIKRC 431 (555)
Q Consensus 379 ~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l-~~~~~~~~~~~~~~pei~~~ 431 (555)
.-.+.-.|.|++|||||.| -|.+.-+ .+.....++.-...|.|+-.
T Consensus 1016 -------LQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~~kv~rLlts~L~diqG~ 1065 (1330)
T KOG0949|consen 1016 -------LQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPRQKVQRLLTSLLPDIQGA 1065 (1330)
T ss_pred -------cccCchhHHhhhccccccccccccceEEEeCcHHHHHHHHHHhhhcccCC
Confidence 3466779999999999999 5655444 46665566555555655543
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.85 E-value=1.1e-19 Score=201.37 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=100.2
Q ss_pred HHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCC--CcEEEEecC
Q 008735 272 TIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG--FRKVILATN 349 (555)
Q Consensus 272 ~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g--~~~vlvaT~ 349 (555)
.+.++.....+.++||||+++..+..+++.|... .++.+..+||+|+..+|.++++.|+++ ..+|+|||+
T Consensus 483 ~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd 554 (956)
T PRK04914 483 WLIDFLKSHRSEKVLVICAKAATALQLEQALRER--------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE 554 (956)
T ss_pred HHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech
Confidence 3444445455778999999999999999999543 178899999999999999999999974 589999999
Q ss_pred ccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCE--EEEccChh
Q 008735 350 IAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK--CFRLYPEN 415 (555)
Q Consensus 350 ~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~--~~~l~~~~ 415 (555)
++++|+|++.+++||+ || .|.+...|.||+||+||.| .|. +|.++.+.
T Consensus 555 vgseGlNlq~a~~VIn--------fD----------lP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 555 IGSEGRNFQFASHLVL--------FD----------LPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred hhccCCCcccccEEEE--------ec----------CCCCHHHHHHHhcccccCCCCceEEEEEccCCC
Confidence 9999999999999999 98 7999999999999999999 443 45555443
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.85 E-value=3.5e-20 Score=204.32 Aligned_cols=303 Identities=18% Similarity=0.158 Sum_probs=181.2
Q ss_pred CCCcHHHHHHHHHHHhcC---C-eEEEEcCCCCchhhHHHHHHHhccc--cCCCcEEEEeCccHHHHHHHHHHHHHHhCC
Q 008735 40 SLPIASVEKRLVEEVRKN---D-ILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAEESGV 113 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~~---~-~~ii~apTGsGKT~~l~~~i~~~~~--~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~ 113 (555)
.-+.++.|+.+++.+... . .+++.||||+|||++...+...... .....+++++.|.+.++.++.+++....+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~ 272 (733)
T COG1203 193 EHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGL 272 (733)
T ss_pred CchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcc
Confidence 345578888888887643 4 8889999999999655444433322 224678999999999999999998765542
Q ss_pred cc--CC-EEEEEEec----CCC-----CCchhh------------HHHhhc---CCCC------CCCceeEeeccccccc
Q 008735 114 EL--GQ-RVGYSIRF----DDR-----TSTSTR------------IKEALL---DPYL------SRYSAIIVDEAHERTV 160 (555)
Q Consensus 114 ~~--~~-~vg~~~~~----~~~-----~~~~~~------------i~~~~~---~~~l------~~~~~iIiDE~He~~~ 160 (555)
.. +. ..|..... ... ...... ...+.. .+.- -..+.+|+||+|-...
T Consensus 273 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 273 FSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred cccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 21 11 11111000 000 000000 000100 0110 1237999999997766
Q ss_pred chhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH---HHHhh
Q 008735 161 HTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEY 237 (555)
Q Consensus 161 ~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~---~~~~~ 237 (555)
+. .+..+-.++.... ..+.++|+||||++.. .+.++
T Consensus 353 ~~--~~~~l~~~i~~l~---------------------------------------~~g~~ill~SATlP~~~~~~l~~~ 391 (733)
T COG1203 353 ET--MLAALLALLEALA---------------------------------------EAGVPVLLMSATLPPFLKEKLKKA 391 (733)
T ss_pred cc--hHHHHHHHHHHHH---------------------------------------hCCCCEEEEecCCCHHHHHHHHHH
Confidence 63 2222222221110 0567899999999764 34455
Q ss_pred hCCCCeEEeCCccccceEE-EcCCCC-CChHHHH--HHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCC
Q 008735 238 FGCAKAVHVQGRQFPVEIL-YTLYPE-PDYLDAT--LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEAS 313 (555)
Q Consensus 238 ~~~~~~~~~~~~~~~v~~~-~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~ 313 (555)
++....+.......+.... ...... .+..+.. ............+++++|-|||.+.|.+++..|++.
T Consensus 392 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~-------- 463 (733)
T COG1203 392 LGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK-------- 463 (733)
T ss_pred HhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhc--------
Confidence 5433222221110000000 000000 0011110 001111112234788999999999999999999885
Q ss_pred CCeEEEEecCCCCHHHHHhhcCcC----CCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecC
Q 008735 314 RKLVTVPIFSSLPSEQQMRVFAPA----AAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 389 (555)
Q Consensus 314 ~~~~v~~lh~~l~~~~r~~i~~~f----~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s 389 (555)
+..+..+||.+...+|.+.++.+ +.+...|+|||++.|.|||+. .+++|- .+.+
T Consensus 464 -~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT--------------------e~aP 521 (733)
T COG1203 464 -GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT--------------------ELAP 521 (733)
T ss_pred -CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee--------------------cCCC
Confidence 23699999999999998877743 456789999999999999995 677772 4778
Q ss_pred HHhHHHHhcccCCCC---CCEEEEccC
Q 008735 390 KAQALQRSGRAGREG---PGKCFRLYP 413 (555)
Q Consensus 390 ~~~~~Qr~GRaGR~~---~G~~~~l~~ 413 (555)
..+.+||+||++|.| +|..+..-.
T Consensus 522 idSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 522 IDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred HHHHHHHHHHHhhcccccCCceeEeec
Confidence 899999999999999 566655543
No 103
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=4.6e-19 Score=190.36 Aligned_cols=163 Identities=21% Similarity=0.234 Sum_probs=121.1
Q ss_pred eEEEeccCCC--HHHHHhhhCCCCeEEeCCccccceEEEcCCC---CCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTLYP---EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++-+||.|.. .++|.+.++ .+++.+|.........+.... ...........+...+ ..+.++||||+|...+
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~-l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~--~~g~pvLI~t~si~~s 453 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYN-MEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERH--AKGQPVLVGTVAIESS 453 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhC-CCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCcHHHH
Confidence 5788999983 345655553 557777654322111111111 1122233333333333 3478899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccC---CeE-----EEEeCC
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP---GIK-----YVIDPG 367 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip---~v~-----~VId~g 367 (555)
+.++..|.+. ++....+|+++...|+..+.++++.|. |+||||+|+||.||+ +|. +||+
T Consensus 454 e~ls~~L~~~---------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~-- 520 (796)
T PRK12906 454 ERLSHLLDEA---------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIG-- 520 (796)
T ss_pred HHHHHHHHHC---------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEe--
Confidence 9999999986 888899999999888888988888777 999999999999994 899 9998
Q ss_pred cccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChh
Q 008735 368 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 415 (555)
Q Consensus 368 ~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 415 (555)
|+ .|-|...+.|+.|||||.| +|.+..+.+-+
T Consensus 521 ------te----------~pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 521 ------TE----------RHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred ------ee----------cCCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 55 6899999999999999999 99987777544
No 104
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.81 E-value=9e-18 Score=181.29 Aligned_cols=127 Identities=19% Similarity=0.186 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEE
Q 008735 265 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKV 344 (555)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~v 344 (555)
.++..+..+.... ..+.++||||+|++.++.+++.|.+. ++.+..+||+++..+|.+++..|+.|++.|
T Consensus 427 qi~~Ll~eI~~~~--~~g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~V 495 (655)
T TIGR00631 427 QVDDLLSEIRQRV--ARNERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLGEFDV 495 (655)
T ss_pred hHHHHHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcCCceE
Confidence 3444455444433 23678999999999999999999986 788999999999999999999999999999
Q ss_pred EEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChh
Q 008735 345 ILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPEN 415 (555)
Q Consensus 345 lvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~ 415 (555)
+|||+++++|+|+|++++||. +|... ...|.+..+|+||+|||||...|+++.+++..
T Consensus 496 LV~t~~L~rGfDiP~v~lVvi--------~Dadi-----fG~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 496 LVGINLLREGLDLPEVSLVAI--------LDADK-----EGFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred EEEcChhcCCeeeCCCcEEEE--------eCccc-----ccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 999999999999999999997 55321 11477889999999999999999999888653
No 105
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.7e-18 Score=185.11 Aligned_cols=309 Identities=18% Similarity=0.179 Sum_probs=209.7
Q ss_pred CCCcHHHHHHHHHHHhcC----CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCcc
Q 008735 40 SLPIASVEKRLVEEVRKN----DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 115 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~~----~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~ 115 (555)
.+.+..-|+.+.+.+... ...++.|-||||||-....++.... .+|+.++++.|...+..|+.+++...++..+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L--~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v 273 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL--AQGKQVLVLVPEIALTPQLLARFKARFGAKV 273 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH--HcCCEEEEEeccccchHHHHHHHHHHhCCCh
Confidence 456678899999888766 7899999999999966666665443 2477899999999999999999999998665
Q ss_pred CCEEEEEEecCCCCCchhhHHHhhcC----------------CCCCCCceeEeecccccccchhHHHHH-HHHHHHhhcc
Q 008735 116 GQRVGYSIRFDDRTSTSTRIKEALLD----------------PYLSRYSAIIVDEAHERTVHTDVLLGL-LKKVQNARSK 178 (555)
Q Consensus 116 ~~~vg~~~~~~~~~~~~~~i~~~~~~----------------~~l~~~~~iIiDE~He~~~~~d~ll~~-l~~~~~~~~~ 178 (555)
+.. ++..+...+...|..- --+.++++|||||=|+.+...+.-..+ .+++...|.+
T Consensus 274 ~vl-------HS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~ 346 (730)
T COG1198 274 AVL-------HSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK 346 (730)
T ss_pred hhh-------cccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHH
Confidence 543 3455565665544431 017899999999999766655442221 2332222210
Q ss_pred cccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCC-CCeEEeCCccc---cce
Q 008735 179 SADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGC-AKAVHVQGRQF---PVE 254 (555)
Q Consensus 179 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~-~~~~~~~~~~~---~v~ 254 (555)
..++++|+-|||+..+.+.+...+ ...+.+..|.. +.+
T Consensus 347 --------------------------------------~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~ 388 (730)
T COG1198 347 --------------------------------------KENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPR 388 (730)
T ss_pred --------------------------------------HhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCc
Confidence 067899999999998887655433 23333433332 222
Q ss_pred EEEcCCCC----CC--hHHHHHHHHHHHHhcCCCCcEEEEcCCH------------------------------------
Q 008735 255 ILYTLYPE----PD--YLDATLITIFQVHLDEAPGDILVFLTGQ------------------------------------ 292 (555)
Q Consensus 255 ~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~iLVF~~t~------------------------------------ 292 (555)
+...+... .+ +....+..+.+... .+.++|+|+|.|
T Consensus 389 v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~--~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH 466 (730)
T COG1198 389 VEIIDMRKEPLETGRSLSPALLEAIRKTLE--RGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCH 466 (730)
T ss_pred ceEEeccccccccCccCCHHHHHHHHHHHh--cCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeC
Confidence 33222111 11 22333333333222 367799999988
Q ss_pred ------------------------HHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHH--HHhhcCcCCCCCcEEEE
Q 008735 293 ------------------------EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ--QMRVFAPAAAGFRKVIL 346 (555)
Q Consensus 293 ------------------------~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~--r~~i~~~f~~g~~~vlv 346 (555)
..++++++.|.+.++ +..++.+.++.+... -+..+..|.+|+.+|||
T Consensus 467 ~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP-------~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILi 539 (730)
T COG1198 467 YCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFP-------GARIIRIDSDTTRRKGALEDLLDQFANGEADILI 539 (730)
T ss_pred CCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCC-------CCcEEEEccccccchhhHHHHHHHHhCCCCCeee
Confidence 247888888888765 677888888776543 45788999999999999
Q ss_pred ecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEE
Q 008735 347 ATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 410 (555)
Q Consensus 347 aT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~ 410 (555)
.|++++.|.|+|+++.|.-.+ -|..-+...+....-....+.|-+|||||.+ +|.++.
T Consensus 540 GTQmiaKG~~fp~vtLVgvl~------aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 540 GTQMIAKGHDFPNVTLVGVLD------ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred cchhhhcCCCcccceEEEEEe------chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 999999999999999876211 3333333444555667788999999999996 787654
No 106
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=7e-19 Score=159.39 Aligned_cols=293 Identities=15% Similarity=0.180 Sum_probs=181.7
Q ss_pred CCCCCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc-CCCcEEEEeCc
Q 008735 18 LHSKPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQP 95 (555)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~-~~~~~i~~~~P 95 (555)
.|+..|.+++ .+.+..++-..++-.|.++|.++++...-|-+++..|.+|-|||..+.+.-+..... .+...++++..
T Consensus 39 ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmch 118 (387)
T KOG0329|consen 39 IHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH 118 (387)
T ss_pred EeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEec
Confidence 5667776665 777888888999999999999999999999999999999999995544444433222 23446888899
Q ss_pred cHHHHHHHHHHHHHHhCCccCCEEEEEEec--------------CCCCCchhhHHHhhcCC--CCCCCceeEeecccccc
Q 008735 96 RRVAAVTVAKRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERT 159 (555)
Q Consensus 96 ~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~i~~~~~~~--~l~~~~~iIiDE~He~~ 159 (555)
+|+++-|+.+....+.+.-....+..-.++ ...+.++.++..+..+. .+.++.++|+|||+.
T Consensus 119 trelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk-- 196 (387)
T KOG0329|consen 119 TRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK-- 196 (387)
T ss_pred cHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH--
Confidence 999999987665444432222222211111 11123445555555443 378899999999952
Q ss_pred cchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH--HHH-h
Q 008735 160 VHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-E 236 (555)
Q Consensus 160 ~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--~~~-~ 236 (555)
++.. +-.+| ++..+.+ .....-|+..+|||++.+ -.. +
T Consensus 197 -----mle~---lDMrR---------------------------DvQEifr----~tp~~KQvmmfsatlskeiRpvC~k 237 (387)
T KOG0329|consen 197 -----MLEQ---LDMRR---------------------------DVQEIFR----MTPHEKQVMMFSATLSKEIRPVCHK 237 (387)
T ss_pred -----HHHH---HHHHH---------------------------HHHHHhh----cCcccceeeeeeeecchhhHHHHHh
Confidence 1111 11111 1111111 112567899999999544 222 4
Q ss_pred hhCCCCeEEeCCc----cccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCC
Q 008735 237 YFGCAKAVHVQGR----QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA 312 (555)
Q Consensus 237 ~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~ 312 (555)
++.++--+.+... .+.+..+|........ +..+..+++ ...-.+++||+.+... |
T Consensus 238 FmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eK-Nrkl~dLLd---~LeFNQVvIFvKsv~R-------l---------- 296 (387)
T KOG0329|consen 238 FMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEK-NRKLNDLLD---VLEFNQVVIFVKSVQR-------L---------- 296 (387)
T ss_pred hhcCchhhhccchhhhhhhhHHHHHHhhhhhhh-hhhhhhhhh---hhhhcceeEeeehhhh-------h----------
Confidence 4433222222211 1122222322211111 111111222 1224568888876543 0
Q ss_pred CCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHh
Q 008735 313 SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQ 392 (555)
Q Consensus 313 ~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~ 392 (555)
. | ..+ +|||+++.+|+|+..|+.|+| || .|-+..+
T Consensus 297 --~---------------------f---~kr-~vat~lfgrgmdiervNi~~N--------Yd----------mp~~~Dt 331 (387)
T KOG0329|consen 297 --S---------------------F---QKR-LVATDLFGRGMDIERVNIVFN--------YD----------MPEDSDT 331 (387)
T ss_pred --h---------------------h---hhh-hHHhhhhccccCcccceeeec--------cC----------CCCCchH
Confidence 0 1 122 899999999999999999999 99 7899999
Q ss_pred HHHHhcccCCCC-CCEEEEccChhhH
Q 008735 393 ALQRSGRAGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 393 ~~Qr~GRaGR~~-~G~~~~l~~~~~~ 417 (555)
|+||.|||||.| .|.++.+.+.+.-
T Consensus 332 YlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 332 YLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred HHHHhhhhhccccccceeehhcchhh
Confidence 999999999999 8999999866544
No 107
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=5.9e-17 Score=175.10 Aligned_cols=177 Identities=18% Similarity=0.204 Sum_probs=113.5
Q ss_pred eEEEeccCC--CHHHHHhhhCCCCeEEeCCccccceEEEcCC---CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY---PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++-+||.|. ..++|.+.++ .+++.++.........+... .........+..+...+. .+.|+||||+|.+.+
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~-l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~--~g~PVLVgt~Sie~s 457 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYN-LEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGV--RKQPVLVGTVSIEAS 457 (896)
T ss_pred hhccCCCCChhHHHHHHHHhC-CCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHh--CCCCEEEEeCcHHHH
Confidence 567888888 3345555553 56777765432222222111 122334444555555444 377899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccC-C--eEE-EEeCCcc--
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP-G--IKY-VIDPGFV-- 369 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip-~--v~~-VId~g~~-- 369 (555)
+.+++.|.+. ++....+|+.+...|+..+.++|+.|. |+||||+|++|+||. + ..+ +.+.-..
T Consensus 458 E~ls~~L~~~---------gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~ 526 (896)
T PRK13104 458 EFLSQLLKKE---------NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADAS 526 (896)
T ss_pred HHHHHHHHHc---------CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchh
Confidence 9999999987 899999999999999999999999995 999999999999985 1 000 0000000
Q ss_pred --------------cceeecCCCCcccc-ceeecCHHhHHHHhcccCCCC-CCEEEEcc
Q 008735 370 --------------KARLYDPVKGMESL-LVVPISKAQALQRSGRAGREG-PGKCFRLY 412 (555)
Q Consensus 370 --------------~~~~yd~~~~~~~l-~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~ 412 (555)
+..+ -...|...+ +..+-|..-=.|-.|||||.| ||.+-.+.
T Consensus 527 ~~~~~~~~~~~~~~~~~V-~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~l 584 (896)
T PRK13104 527 EQEKEAVKKEWQKRHDEV-IAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYL 584 (896)
T ss_pred hHHHHHHHHHhhhhhhHH-HHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE
Confidence 0000 001222221 224556666689999999999 88754444
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=3.6e-17 Score=176.58 Aligned_cols=178 Identities=20% Similarity=0.178 Sum_probs=112.1
Q ss_pred eEEEeccCCC--HHHHHhhhCCCCeEEeCCccccceEEEcCC---CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTLY---PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++.+||.|.. .++|.+.+ +.+++.+|.........+... ...+........+...+ ..+.++||||+|.+.+
T Consensus 367 kl~GmTGTa~te~~E~~~iY-~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~--~~grpVLIft~Si~~s 443 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIY-NLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERH--KKGQPVLVGTVSIEKS 443 (830)
T ss_pred hhcccCCCcHHHHHHHHHHh-CCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHH
Confidence 5788998883 34555555 356777765432111111111 11223333333333333 3467899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCe---EEEEeCCccc--
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI---KYVIDPGFVK-- 370 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v---~~VId~g~~~-- 370 (555)
+.+++.|.+. ++....+||. +.+|+..+.+|+.+...|+||||+|+||+||+== .+.....+..
T Consensus 444 e~Ls~~L~~~---------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~ 512 (830)
T PRK12904 444 ELLSKLLKKA---------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEET 512 (830)
T ss_pred HHHHHHHHHC---------CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhh
Confidence 9999999986 8889999996 7789999999999999999999999999999721 0000000000
Q ss_pred --------------ceeecCCCCccccc-eeecCHHhHHHHhcccCCCC-CCEEEEcc
Q 008735 371 --------------ARLYDPVKGMESLL-VVPISKAQALQRSGRAGREG-PGKCFRLY 412 (555)
Q Consensus 371 --------------~~~yd~~~~~~~l~-~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~ 412 (555)
...--...|..... ..+-|..-=.|-.|||||.| ||.+-.+.
T Consensus 513 ~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~l 570 (830)
T PRK12904 513 EEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL 570 (830)
T ss_pred hHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEE
Confidence 00000112222222 24667777799999999999 88765544
No 109
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.75 E-value=2.1e-16 Score=172.06 Aligned_cols=125 Identities=19% Similarity=0.197 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEE
Q 008735 266 LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVI 345 (555)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vl 345 (555)
++..+..+.... ..+.++||||+|++.++.+++.|.+. ++.+..+||+++..+|..+++.|+.|...|+
T Consensus 432 ~~~L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vl 500 (652)
T PRK05298 432 VDDLLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVL 500 (652)
T ss_pred HHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcCCceEE
Confidence 444444444433 23678999999999999999999886 8899999999999999999999999999999
Q ss_pred EecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccCh
Q 008735 346 LATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 414 (555)
Q Consensus 346 vaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~ 414 (555)
|||+++++|+|+|++++||. +|... -..|.+..+|+||+|||||...|+|+.+++.
T Consensus 501 V~t~~L~rGfdlp~v~lVii--------~d~ei-----fG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 501 VGINLLREGLDIPEVSLVAI--------LDADK-----EGFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred EEeCHHhCCccccCCcEEEE--------eCCcc-----cccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 99999999999999999998 55221 1146788999999999999889999999873
No 110
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=3.6e-17 Score=163.57 Aligned_cols=277 Identities=23% Similarity=0.246 Sum_probs=162.8
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 135 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 135 (555)
..+.++-+|||.||||+-+.+-+... +.-++.-|.|.+|.+++.++.+ .+..+....|-..++..........
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~a------ksGvycGPLrLLA~EV~~r~na-~gipCdL~TGeE~~~~~~~~~~a~h 262 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKSA------KSGVYCGPLRLLAHEVYDRLNA-LGIPCDLLTGEERRFVLDNGNPAQH 262 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhhh------ccceecchHHHHHHHHHHHhhh-cCCCccccccceeeecCCCCCcccc
Confidence 34678889999999998876655443 3567889999999999998754 4444444444222221111000000
Q ss_pred H----HhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhh
Q 008735 136 K----EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQ 211 (555)
Q Consensus 136 ~----~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~ 211 (555)
. ++. +.-..+++.||||++ ||-|..+|-.+...+--
T Consensus 263 vScTVEM~--sv~~~yeVAViDEIQ--------------------------------------mm~Dp~RGwAWTrALLG 302 (700)
T KOG0953|consen 263 VSCTVEMV--SVNTPYEVAVIDEIQ--------------------------------------MMRDPSRGWAWTRALLG 302 (700)
T ss_pred eEEEEEEe--ecCCceEEEEehhHH--------------------------------------hhcCcccchHHHHHHHh
Confidence 0 111 123458999999997 23333333222222111
Q ss_pred ccccCCCCceEEEeccCCC-HHHHHhhhCCCCeEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcC
Q 008735 212 CQGRKFAPLKLIIMSASLD-ARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLT 290 (555)
Q Consensus 212 ~~~~~~~~~~ii~~SAT~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~ 290 (555)
+.. ..+.+-+=-|-++ .+++.+.-|+. +++++.+...+--+.. .++.-..+-.+|..+| |-
T Consensus 303 l~A---dEiHLCGepsvldlV~~i~k~TGd~-----------vev~~YeRl~pL~v~~---~~~~sl~nlk~GDCvV-~F 364 (700)
T KOG0953|consen 303 LAA---DEIHLCGEPSVLDLVRKILKMTGDD-----------VEVREYERLSPLVVEE---TALGSLSNLKPGDCVV-AF 364 (700)
T ss_pred hhh---hhhhccCCchHHHHHHHHHhhcCCe-----------eEEEeecccCcceehh---hhhhhhccCCCCCeEE-Ee
Confidence 111 1111111111111 12222222221 1111111111100111 1222223334676665 55
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCC--CCcEEEEecCccccccccCCeEEEEeCCc
Q 008735 291 GQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA--GFRKVILATNIAETSVTIPGIKYVIDPGF 368 (555)
Q Consensus 291 t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~--g~~~vlvaT~~~e~Gvdip~v~~VId~g~ 368 (555)
|++++..+...|++. .+..+..+||++|++.|.+--..|.+ ++.+|+||||++++|+|+ +++.||-+-+
T Consensus 365 Skk~I~~~k~kIE~~--------g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl 435 (700)
T KOG0953|consen 365 SKKDIFTVKKKIEKA--------GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSL 435 (700)
T ss_pred ehhhHHHHHHHHHHh--------cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeec
Confidence 889999999999886 24458889999999998877777766 899999999999999999 6777774222
Q ss_pred ccceeecCCCCccccceeecCHHhHHHHhcccCCCC----CCEEEEccChh
Q 008735 369 VKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG----PGKCFRLYPEN 415 (555)
Q Consensus 369 ~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~----~G~~~~l~~~~ 415 (555)
...+.-.+.+++.++..|.+|||||.| .|.+..|+.++
T Consensus 436 ---------~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 436 ---------IKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred ---------ccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 222234557899999999999999988 68888888665
No 111
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.72 E-value=2.7e-17 Score=159.38 Aligned_cols=109 Identities=18% Similarity=0.346 Sum_probs=98.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCC
Q 008735 280 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG 359 (555)
Q Consensus 280 ~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~ 359 (555)
....+.||||.|+.+|..+.+++.+.-.+ .+.+..+||+..+.||++-++.|+.+.++.+||||++++|+||-+
T Consensus 503 h~mdkaiifcrtk~dcDnLer~~~qkgg~------~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g 576 (725)
T KOG0349|consen 503 HAMDKAIIFCRTKQDCDNLERMMNQKGGK------HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITG 576 (725)
T ss_pred hccCceEEEEeccccchHHHHHHHHcCCc------cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccC
Confidence 34577999999999999999999886432 789999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEcc
Q 008735 360 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 412 (555)
Q Consensus 360 v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~ 412 (555)
+-++|| .+.|-.+.+|+||+||+||.. -|.++.|.
T Consensus 577 ~p~~in------------------vtlpd~k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 577 LPFMIN------------------VTLPDDKTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred CceEEE------------------EecCcccchhhhhhhccchhhhcceeEEEe
Confidence 999998 336888999999999999988 88888886
No 112
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.70 E-value=3.1e-15 Score=149.55 Aligned_cols=169 Identities=17% Similarity=0.171 Sum_probs=125.9
Q ss_pred CCceEEEeccCCCHHHHHhhhCCC--CeEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 218 APLKLIIMSASLDARGFSEYFGCA--KAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 218 ~~~~ii~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
...|+|..|||+..-++..--+.. .++.-.|- ++......+...-++..+..+...... +.++||-+=|++.+
T Consensus 385 ~~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGL---lDP~ievRp~~~QvdDL~~EI~~r~~~--~eRvLVTtLTKkmA 459 (663)
T COG0556 385 KIPQTIYVSATPGDYELEQSGGNVVEQIIRPTGL---LDPEIEVRPTKGQVDDLLSEIRKRVAK--NERVLVTTLTKKMA 459 (663)
T ss_pred hcCCEEEEECCCChHHHHhccCceeEEeecCCCC---CCCceeeecCCCcHHHHHHHHHHHHhc--CCeEEEEeehHHHH
Confidence 346899999999766655332111 11111111 111222234445566666665554433 57899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeec
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYD 375 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd 375 (555)
+.+.++|.+. ++.+..+|+++..-||.+++...+.|..+|||.-|.+-.|+|+|.|..|.- .|
T Consensus 460 EdLT~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI--------lD 522 (663)
T COG0556 460 EDLTEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI--------LD 522 (663)
T ss_pred HHHHHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE--------ee
Confidence 9999999997 999999999999999999999999999999999999999999999999874 44
Q ss_pred CCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccC
Q 008735 376 PVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYP 413 (555)
Q Consensus 376 ~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~ 413 (555)
... ..+.-|-.+.+|-+|||.|.-.|+++...+
T Consensus 523 ADK-----eGFLRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 523 ADK-----EGFLRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred cCc-----cccccccchHHHHHHHHhhccCCeEEEEch
Confidence 321 113567788999999999999999886653
No 113
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.69 E-value=2.9e-15 Score=157.62 Aligned_cols=293 Identities=13% Similarity=0.094 Sum_probs=164.6
Q ss_pred CCcHHHHHHHHHHH----hcC-CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCc-
Q 008735 41 LPIASVEKRLVEEV----RKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE- 114 (555)
Q Consensus 41 l~~~~~Q~~~i~~i----~~~-~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~- 114 (555)
..++.||..++..+ .+| +-+++++.||+|||..+..++.........++|+++.-++.+..|....+....-..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 34567999887665 333 468899999999997766666555445556799999999999999887665544211
Q ss_pred -cCCEEEEEEec--CCCCCchhhHHHhhcC-----C--CCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCC
Q 008735 115 -LGQRVGYSIRF--DDRTSTSTRIKEALLD-----P--YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHS 184 (555)
Q Consensus 115 -~~~~vg~~~~~--~~~~~~~~~i~~~~~~-----~--~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~ 184 (555)
+....++.... ...+++...+...... . ....+++|||||||. +.....- .++.
T Consensus 244 ~~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR-gi~~~~~-----~I~d---------- 307 (875)
T COG4096 244 KMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR-GIYSEWS-----SILD---------- 307 (875)
T ss_pred ceeeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh-hHHhhhH-----HHHH----------
Confidence 11111111111 1111121112111111 1 134589999999994 2111110 1111
Q ss_pred CCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHH--hhhCCCCeEEe------------CCc
Q 008735 185 NGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFS--EYFGCAKAVHV------------QGR 249 (555)
Q Consensus 185 ~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~--~~~~~~~~~~~------------~~~ 249 (555)
. -+.-.++++||+ +..+.. .||++.|+... +.+
T Consensus 308 --------------------------Y------FdA~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~ 355 (875)
T COG4096 308 --------------------------Y------FDAATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYK 355 (875)
T ss_pred --------------------------H------HHHHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCC
Confidence 1 122345558888 322222 56633332211 111
Q ss_pred cccceEEEcC------------------C--C--------------CCChHHHHHHHHHHHHhc--C--CCCcEEEEcCC
Q 008735 250 QFPVEILYTL------------------Y--P--------------EPDYLDATLITIFQVHLD--E--APGDILVFLTG 291 (555)
Q Consensus 250 ~~~v~~~~~~------------------~--~--------------~~~~~~~~~~~~~~~~~~--~--~~~~iLVF~~t 291 (555)
...+...... . . .....+.....+.+.... . ..+++||||.+
T Consensus 356 vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n 435 (875)
T COG4096 356 VIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKN 435 (875)
T ss_pred ceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeC
Confidence 1111110000 0 0 001112222333333333 1 15789999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcC-CCCCcEEEEecCccccccccCCeEEEEeCCccc
Q 008735 292 QEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPA-AAGFRKVILATNIAETSVTIPGIKYVIDPGFVK 370 (555)
Q Consensus 292 ~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f-~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~ 370 (555)
..+|+.+...+.+..++.. +-.+..+.++-...+ ..+-.-+ ++...+|.++.+++.+|||+|.|..+|
T Consensus 436 ~dHAe~i~~~~~~~ype~~----~~~a~~IT~d~~~~q-~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV------ 504 (875)
T COG4096 436 HDHAERIREALVNEYPEYN----GRYAMKITGDAEQAQ-ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV------ 504 (875)
T ss_pred cHHHHHHHHHHHHhCcccc----CceEEEEeccchhhH-HHHHHHHhcCCCCceEEehhhhhcCCCchheeeee------
Confidence 9999999999998876532 344555566544332 2222222 345568999999999999999999888
Q ss_pred ceeecCCCCccccceeecCHHhHHHHhcccCCCC
Q 008735 371 ARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 404 (555)
Q Consensus 371 ~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~ 404 (555)
|+. .-.|+.-|.||+||+=|..
T Consensus 505 ---F~r---------~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 505 ---FDR---------KVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred ---ehh---------hhhhHHHHHHHhcCccccC
Confidence 441 2468889999999999876
No 114
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.69 E-value=2.1e-15 Score=160.91 Aligned_cols=295 Identities=17% Similarity=0.213 Sum_probs=180.8
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHH
Q 008735 31 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 110 (555)
Q Consensus 31 ~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~ 110 (555)
+.+..++....++|+.|.-....+..|+...++||||.||||....+.+-.+ .+|++++++.|++.|+.|..+++.++
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a--~kgkr~yii~PT~~Lv~Q~~~kl~~~ 148 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA--KKGKRVYIIVPTTTLVRQVYERLKKF 148 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH--hcCCeEEEEecCHHHHHHHHHHHHHH
Confidence 4455566677799999999999999999999999999999977655544332 24678999999999999999998776
Q ss_pred hCCccCCEEEEEEecCCCCCchhhHH---Hhh--------------cC--CCCC--CCceeEeecccc---cccchhHHH
Q 008735 111 SGVELGQRVGYSIRFDDRTSTSTRIK---EAL--------------LD--PYLS--RYSAIIVDEAHE---RTVHTDVLL 166 (555)
Q Consensus 111 ~~~~~~~~vg~~~~~~~~~~~~~~i~---~~~--------------~~--~~l~--~~~~iIiDE~He---~~~~~d~ll 166 (555)
.....+..+-+. +++..+...+-. .+. .. ..+. ++++|++|.++. .+-+.|.++
T Consensus 149 ~e~~~~~~~~~~--yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL 226 (1187)
T COG1110 149 AEDAGSLDVLVV--YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLL 226 (1187)
T ss_pred HhhcCCcceeee--eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHHHH
Confidence 532211111111 333333322211 111 10 1133 689999999974 233344444
Q ss_pred HHHH----------HHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhc----cccCCCCceEEEeccCCCHH
Q 008735 167 GLLK----------KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQC----QGRKFAPLKLIIMSASLDAR 232 (555)
Q Consensus 167 ~~l~----------~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~----~~~~~~~~~ii~~SAT~~~~ 232 (555)
.++- .+...|. .+-...........+... ..+....-++|..|||..+.
T Consensus 227 ~LlGf~eE~i~~a~~~~~lr~-----------------~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~r 289 (1187)
T COG1110 227 RLLGFSEEVIESAYELIKLRR-----------------KLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPR 289 (1187)
T ss_pred HHcCCCHHHHHHHHHHHHHHH-----------------HhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCC
Confidence 3331 1111110 000111111111111111 01122556899999999432
Q ss_pred -----HHHhhhCCCCeEEeCCcc---ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCC---HHHHHHHHHH
Q 008735 233 -----GFSEYFGCAKAVHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTG---QEEIESVERL 301 (555)
Q Consensus 233 -----~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t---~~~~~~l~~~ 301 (555)
.|.+.+| +.+.+.. .++...|... .-.+. ++.+.+.. +...|||++. ++.++++++.
T Consensus 290 g~R~~LfReLlg----FevG~~~~~LRNIvD~y~~~---~~~e~----~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~ 357 (1187)
T COG1110 290 GSRLKLFRELLG----FEVGSGGEGLRNIVDIYVES---ESLEK----VVELVKKL-GDGGLIFVPIDYGREKAEELAEY 357 (1187)
T ss_pred CchHHHHHHHhC----CccCccchhhhheeeeeccC---ccHHH----HHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHH
Confidence 2344443 1222211 2222233322 22222 22222222 4458999999 8899999999
Q ss_pred HHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEec----CccccccccC-CeEEEEeCCcccce
Q 008735 302 VQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT----NIAETSVTIP-GIKYVIDPGFVKAR 372 (555)
Q Consensus 302 L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT----~~~e~Gvdip-~v~~VId~g~~~~~ 372 (555)
|++. ++.+..+|+. ..+.++.|..|+++++|.. .++-+|+|+| -++|+|-.|..+.+
T Consensus 358 Lr~~---------Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 358 LRSH---------GINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred HHhc---------CceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 9987 8999999984 3678999999999999986 4899999999 78999998887544
No 115
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=1.3e-16 Score=159.56 Aligned_cols=318 Identities=15% Similarity=0.050 Sum_probs=193.2
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHH
Q 008735 31 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 110 (555)
Q Consensus 31 ~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~ 110 (555)
..++++....-.-+.+|.+++..+.+|+++++.-.|.|||+++.................++..|+.++++...+...-.
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~ 354 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVH 354 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEE
Confidence 55666667777788999999999999999999999999999443222222111112334566667766665433211000
Q ss_pred hCCccCCEEEEEEecCCCCCchhh-HH----------------HhhcC-----CCCCCCceeEeecccccccchhHHHHH
Q 008735 111 SGVELGQRVGYSIRFDDRTSTSTR-IK----------------EALLD-----PYLSRYSAIIVDEAHERTVHTDVLLGL 168 (555)
Q Consensus 111 ~~~~~~~~vg~~~~~~~~~~~~~~-i~----------------~~~~~-----~~l~~~~~iIiDE~He~~~~~d~ll~~ 168 (555)
...-....-.|...++....+..+ .. ..+.+ -.+-...++++||+|-.-..+..+...
T Consensus 355 ~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~ 434 (1034)
T KOG4150|consen 355 VEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQD 434 (1034)
T ss_pred EEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHH
Confidence 000000011122222322221111 11 11111 112234677899999654443333222
Q ss_pred -HHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CH-HHHHhhhCC--CCe
Q 008735 169 -LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DA-RGFSEYFGC--AKA 243 (555)
Q Consensus 169 -l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~-~~~~~~~~~--~~~ 243 (555)
++++...- .+|.+ ..+++++-.|||+ ++ ....+.++- ...
T Consensus 435 ~~R~L~~L~----------------------~~F~~-------------~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~L 479 (1034)
T KOG4150|consen 435 QLRALSDLI----------------------KGFEA-------------SINMGVYDGDTPYKDRTRLRSELANLSELEL 479 (1034)
T ss_pred HHHHHHHHH----------------------HHHHh-------------hcCcceEeCCCCcCCHHHHHHHhcCCcceEE
Confidence 22221110 01111 1788999999999 43 445566653 345
Q ss_pred EEeCCccccceEEEcCCCC---------CChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCC
Q 008735 244 VHVQGRQFPVEILYTLYPE---------PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASR 314 (555)
Q Consensus 244 ~~~~~~~~~v~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~ 314 (555)
+...|.+..-+......|. .+++......+.+... .+-++|.||++|+-|+-+....++.+-+... ..
T Consensus 480 i~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~-~L 556 (1034)
T KOG4150|consen 480 VTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETAP-HL 556 (1034)
T ss_pred EEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhH-HH
Confidence 6677766554444332221 1122222222222222 2567999999999999887776665443222 11
Q ss_pred CeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHH
Q 008735 315 KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQAL 394 (555)
Q Consensus 315 ~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~ 394 (555)
--.+..|.||...++|.+++..+-.|+.+-|||||++|.||||...+.|+.+| .|.|.+++.
T Consensus 557 V~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~G------------------FP~S~aNl~ 618 (1034)
T KOG4150|consen 557 VEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLG------------------FPGSIANLW 618 (1034)
T ss_pred HHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEcc------------------CchhHHHHH
Confidence 22467789999999999999999999999999999999999999999999988 499999999
Q ss_pred HHhcccCCCC
Q 008735 395 QRSGRAGREG 404 (555)
Q Consensus 395 Qr~GRaGR~~ 404 (555)
|..|||||..
T Consensus 619 QQ~GRAGRRN 628 (1034)
T KOG4150|consen 619 QQAGRAGRRN 628 (1034)
T ss_pred HHhccccccC
Confidence 9999999988
No 116
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=6.7e-15 Score=158.85 Aligned_cols=124 Identities=21% Similarity=0.164 Sum_probs=90.5
Q ss_pred eEEEeccCCC--HHHHHhhhCCCCeEEeCCccccceEEEcCC---CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTLY---PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++-+||.|.. ..+|.+.+ +..++.++.........+... .......+.+..+...+.. +.++||||.|...+
T Consensus 386 kL~GMTGTa~te~~Ef~~iY-~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~--GrpVLV~t~sv~~s 462 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIY-GLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRER--GQPVLVGTVSIEQS 462 (908)
T ss_pred HhhcccCCChHHHHHHHHHh-CCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHc--CCCEEEEeCcHHHH
Confidence 5677888873 33455554 345666665432222222111 1223344555555555543 77899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccC
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP 358 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip 358 (555)
+.++..|... ++....+|+.++..++..+.+.|+.|. |+||||+|++|.||.
T Consensus 463 e~ls~~L~~~---------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIk 514 (908)
T PRK13107 463 ELLARLMVKE---------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIV 514 (908)
T ss_pred HHHHHHHHHC---------CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCccee
Confidence 9999999986 888999999999999999999999998 999999999999985
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.64 E-value=1.2e-14 Score=159.03 Aligned_cols=102 Identities=13% Similarity=0.116 Sum_probs=74.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHH---------------------HHHhhcCcCCC-
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE---------------------QQMRVFAPAAA- 339 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~---------------------~r~~i~~~f~~- 339 (555)
+++++|||.++.+|..+++.|.+..+... +.....++++...+ ....+.+.|++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~----~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~ 589 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKF----EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE 589 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhccccc----CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC
Confidence 58899999999999999999877643210 12344444433222 12357777865
Q ss_pred CCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCC-CCC
Q 008735 340 GFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE-GPG 406 (555)
Q Consensus 340 g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~-~~G 406 (555)
+.++|+|.++.+-+|+|.|.+.+++ .| .|..-..++|.+||+.|. .+|
T Consensus 590 ~~~~ilIVvdmllTGFDaP~l~tLy---------ld----------Kplk~h~LlQai~R~nR~~~~~ 638 (667)
T TIGR00348 590 ENPKLLIVVDMLLTGFDAPILNTLY---------LD----------KPLKYHGLLQAIARTNRIDGKD 638 (667)
T ss_pred CCceEEEEEcccccccCCCccceEE---------Ee----------ccccccHHHHHHHHhccccCCC
Confidence 6789999999999999999999988 55 455556789999999994 443
No 118
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.62 E-value=3e-15 Score=129.98 Aligned_cols=104 Identities=27% Similarity=0.506 Sum_probs=94.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCe
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI 360 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v 360 (555)
.++++||||++...++.+++.|.+. ...+..+||+++..+|..+++.|++|..+++++|+++++|+|+|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~ 97 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP---------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNV 97 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhC
Confidence 4788999999999999999999873 6789999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEc
Q 008735 361 KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 411 (555)
Q Consensus 361 ~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l 411 (555)
++||. ++ .|.+..++.|++||+||.| .|.|+.+
T Consensus 98 ~~vi~--------~~----------~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 98 SVVIN--------YD----------LPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CEEEE--------eC----------CCCCHHHheecccccccCCCCceEEeC
Confidence 99997 55 4788999999999999999 8887753
No 119
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.62 E-value=7.4e-15 Score=133.65 Aligned_cols=116 Identities=20% Similarity=0.179 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEE
Q 008735 44 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSI 123 (555)
Q Consensus 44 ~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~ 123 (555)
+++|.++++.+.+|+++++.||||||||+.+..+++......+...++++.|++.++.+..+.+....... +..+....
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNT-NVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTT-TSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccc-cccccccc
Confidence 58999999999999999999999999998877777665444334589999999999999999988877652 22222111
Q ss_pred ecCC---------------CCCchhhHHHhhcC--CCCCCCceeEeeccccccc
Q 008735 124 RFDD---------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTV 160 (555)
Q Consensus 124 ~~~~---------------~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~ 160 (555)
.... .+.+...+...... ..+.++++||+||+|+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHH
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCccccccc
Confidence 1010 01111122223322 2345599999999996554
No 120
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.61 E-value=1.1e-14 Score=136.92 Aligned_cols=129 Identities=19% Similarity=0.105 Sum_probs=86.3
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccC---CCcEEEEeCccHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR---DGKLIGVTQPRRVAAVTVA 104 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~---~~~~i~~~~P~r~l~~~~~ 104 (555)
++.+.+.+...+.-.++++|.++++.+.+|+++++++|||+|||..+...++...... .+.+++++.|++.++.|..
T Consensus 7 ~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~ 86 (203)
T cd00268 7 SPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIA 86 (203)
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHH
Confidence 4456667777778889999999999999999999999999999965544444443332 4668999999999999998
Q ss_pred HHHHHHhCCccCCEEEEEEecC--------------CCCCchhhHHHhhcC--CCCCCCceeEeecccc
Q 008735 105 KRVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 157 (555)
Q Consensus 105 ~~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He 157 (555)
+.+...... .+..+....... ..+.+...+...+.. ..+.+++++|+||+|.
T Consensus 87 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~ 154 (203)
T cd00268 87 EVARKLGKH-TNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR 154 (203)
T ss_pred HHHHHHhcc-CCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH
Confidence 887665432 122222111100 011122222222222 2467789999999995
No 121
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.60 E-value=1.5e-14 Score=156.39 Aligned_cols=356 Identities=17% Similarity=0.101 Sum_probs=224.3
Q ss_pred ccccccccCCCCCCCCCCCCCCCChh-----HHHHHHHhhcCCCcHHHHHHHHHHHh-cCCeEEEEcCCCCchhhHHHHH
Q 008735 4 VAEGEVSNSTHNPKLHSKPFFNDSSS-----RRQKILQQRKSLPIASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQF 77 (555)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~Q~~~i~~i~-~~~~~ii~apTGsGKT~~l~~~ 77 (555)
++-+-+......|...+..+..++.. .+..+.... .++|.++.+.+. .+++++|.+|+|||||.++..+
T Consensus 1105 sfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~~-----n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a 1179 (1674)
T KOG0951|consen 1105 SFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQDF-----NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELA 1179 (1674)
T ss_pred chhhccCcccCCCCchhhhccccchhccCCcchhhhcccc-----CCceEEEEeeeecccceEEEecCCCCchhHHHHHH
Confidence 34444555555555555444443322 222222221 556888887764 5789999999999999888887
Q ss_pred HHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCC------------CCchhhHHHhhcCCCCC
Q 008735 78 LFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDR------------TSTSTRIKEALLDPYLS 145 (555)
Q Consensus 78 i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~------------~~~~~~i~~~~~~~~l~ 145 (555)
++. .....+++++.|..+.+..++..|...++...|..+--..+ +.. .++..+...+ ...+
T Consensus 1180 ~l~---~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~g-e~s~~lkl~~~~~vii~tpe~~d~l---q~iQ 1252 (1674)
T KOG0951|consen 1180 LLR---PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTG-ETSLDLKLLQKGQVIISTPEQWDLL---QSIQ 1252 (1674)
T ss_pred hcC---CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCC-ccccchHHhhhcceEEechhHHHHH---hhhh
Confidence 776 23356899999999999988888877776555554431111 111 1111111111 2578
Q ss_pred CCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhh--hccccCCCCceEE
Q 008735 146 RYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLK--QCQGRKFAPLKLI 223 (555)
Q Consensus 146 ~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~--~~~~~~~~~~~ii 223 (555)
++++.|.||.|. +.-..++..+.+.+ .+..+...++|++
T Consensus 1253 ~v~l~i~d~lh~---------------------------------------igg~~g~v~evi~S~r~ia~q~~k~ir~v 1293 (1674)
T KOG0951|consen 1253 QVDLFIVDELHL---------------------------------------IGGVYGAVYEVICSMRYIASQLEKKIRVV 1293 (1674)
T ss_pred hcceEeeehhhh---------------------------------------hcccCCceEEEEeeHHHHHHHHHhheeEE
Confidence 899999999992 22333443333322 2222222789999
Q ss_pred EeccCC-CHHHHHhhhCCCCeEEeC--CccccceEEEcCCCCCChHHHHHH-------HHHHHHhcCCCCcEEEEcCCHH
Q 008735 224 IMSASL-DARGFSEYFGCAKAVHVQ--GRQFPVEILYTLYPEPDYLDATLI-------TIFQVHLDEAPGDILVFLTGQE 293 (555)
Q Consensus 224 ~~SAT~-~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~iLVF~~t~~ 293 (555)
.+|..+ |+.++ -++....++... .|+.|...+........+....+. .+... ...+++.+||+|+++
T Consensus 1294 ~ls~~lana~d~-ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~--a~~~k~~~vf~p~rk 1370 (1674)
T KOG0951|consen 1294 ALSSSLANARDL-IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH--AGNRKPAIVFLPTRK 1370 (1674)
T ss_pred Eeehhhccchhh-ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHH--hcCCCCeEEEeccch
Confidence 999998 88877 222233344443 566677777666555444433222 22222 224788999999999
Q ss_pred HHHHHHHHHHHHhhc---------------CCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccC
Q 008735 294 EIESVERLVQERLLQ---------------LPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP 358 (555)
Q Consensus 294 ~~~~l~~~L~~~~~~---------------~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip 358 (555)
+|..++.-+...... ...+.....+. |-+++..++..+-..|..|.+.|.|...- .+|+-..
T Consensus 1371 ~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~ 1447 (1674)
T KOG0951|consen 1371 HARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLK 1447 (1674)
T ss_pred hhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccccc
Confidence 999887655433210 00111223333 99999999999999999999999888766 8888877
Q ss_pred CeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccC---hhhHhcccCCCCC
Q 008735 359 GIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYP---ENEFDKLEDSTKP 426 (555)
Q Consensus 359 ~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~---~~~~~~~~~~~~p 426 (555)
.--+|+- .+..||...... .+.+.++..||+|+|.| .|+|+.+.. +..|.++.....|
T Consensus 1448 ~~lVvvm----gt~~ydg~e~~~----~~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1448 AHLVVVM----GTQYYDGKEHSY----EDYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred ceEEEEe----cceeeccccccc----ccCchhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 6555553 567788666544 47888999999999988 688888873 3344555555544
No 122
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.59 E-value=1.4e-15 Score=119.30 Aligned_cols=72 Identities=29% Similarity=0.473 Sum_probs=68.9
Q ss_pred CeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHH
Q 008735 315 KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQAL 394 (555)
Q Consensus 315 ~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~ 394 (555)
++.+..+||+++.++|..+++.|.+|..+|||||+++++|||+|++++||. |+ .|.+..+|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~----------~~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YD----------PPWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SS----------SESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cc----------cCCCHHHHH
Confidence 889999999999999999999999999999999999999999999999998 66 589999999
Q ss_pred HHhcccCCCC
Q 008735 395 QRSGRAGREG 404 (555)
Q Consensus 395 Qr~GRaGR~~ 404 (555)
|++||+||.|
T Consensus 69 Q~~GR~~R~g 78 (78)
T PF00271_consen 69 QRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSTTT
T ss_pred HHhhcCCCCC
Confidence 9999999986
No 123
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.58 E-value=1.4e-13 Score=153.73 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=93.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCC---CcEEEEecCcccccccc
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG---FRKVILATNIAETSVTI 357 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g---~~~vlvaT~~~e~Gvdi 357 (555)
.+.++|||+.-......+.+.|... ++....+||+++.++|..+++.|.+. ...+|++|.+++.|||+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~---------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR---------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc---------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 3568999999888888888777654 78888999999999999999999653 34678999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCC---CEEEEccChhhH
Q 008735 358 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP---GKCFRLYPENEF 417 (555)
Q Consensus 358 p~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~---G~~~~l~~~~~~ 417 (555)
...++||. || .|-++....|+.||+.|.|. =.+|+|++....
T Consensus 557 t~Ad~VIi--------yD----------~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 557 ATADIVIL--------YD----------SDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred hhCCEEEE--------eC----------CCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 99999998 88 57788899999999999993 358888876554
No 124
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.58 E-value=3.1e-13 Score=147.41 Aligned_cols=96 Identities=17% Similarity=0.153 Sum_probs=74.9
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcC--------------------------C
Q 008735 285 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPA--------------------------A 338 (555)
Q Consensus 285 iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f--------------------------~ 338 (555)
.||=+++.+.+..+++.|.+... .....+.+..|||..+...|..+++.. .
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~---~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~ 835 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLA---EEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPA 835 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhcc---ccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccc
Confidence 67888889999999998887632 222457788999999888887766432 1
Q ss_pred CCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC
Q 008735 339 AGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 404 (555)
Q Consensus 339 ~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~ 404 (555)
.+...|+|||++.|.|+|+. .+.+|- .+.+..+.+||+||+.|.+
T Consensus 836 ~~~~~i~v~Tqv~E~g~D~d-fd~~~~--------------------~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 836 LNHLFIVLATPVEEVGRDHD-YDWAIA--------------------DPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred cCCCeEEEEeeeEEEEeccc-CCeeee--------------------ccCcHHHHHHHhhcccccc
Confidence 25679999999999999994 555552 4788899999999999988
No 125
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.57 E-value=6.5e-13 Score=149.90 Aligned_cols=184 Identities=19% Similarity=0.240 Sum_probs=110.7
Q ss_pred ceEEEeccCCCH----HHHHhhhCCCCe--EEeCCccccc---eEEEcC--CC------CCChHHHHHHHHHHHHhcCCC
Q 008735 220 LKLIIMSASLDA----RGFSEYFGCAKA--VHVQGRQFPV---EILYTL--YP------EPDYLDATLITIFQVHLDEAP 282 (555)
Q Consensus 220 ~~ii~~SAT~~~----~~~~~~~~~~~~--~~~~~~~~~v---~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~ 282 (555)
..+|++|||+.. +-+.+.+|-... ..+...+++. ...+.. .+ ...+.+.....+..+... .+
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cC
Confidence 478999999942 445566663321 2222233331 111211 11 123444455555555443 36
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeE-
Q 008735 283 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIK- 361 (555)
Q Consensus 283 ~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~- 361 (555)
|++|||++|.+..+.++..|...... .++.+.. .+.. .+|.++++.|++|+..||++|+.+.+|||+|+..
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~-----~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l 746 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEF-----EGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGL 746 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccc-----cCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCce
Confidence 88999999999999999998753111 1333332 2332 4788899999999999999999999999999655
Q ss_pred -EEEeCCcccceeecC----------CCCcccc--ceeecCHHhHHHHhcccCCCC--CCEEEEcc
Q 008735 362 -YVIDPGFVKARLYDP----------VKGMESL--LVVPISKAQALQRSGRAGREG--PGKCFRLY 412 (555)
Q Consensus 362 -~VId~g~~~~~~yd~----------~~~~~~l--~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l~ 412 (555)
+||-.|+.-..--|| ..|...+ ...|.....+.|-+||.=|.. .|..+.+-
T Consensus 747 ~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD 812 (850)
T TIGR01407 747 VCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILD 812 (850)
T ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEc
Confidence 455455432211111 0111111 123556778999999999988 67666553
No 126
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.52 E-value=3.2e-14 Score=117.11 Aligned_cols=80 Identities=40% Similarity=0.641 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCccCCCCCCHHHHhhcccCCCChHHHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCChhhHHHHH--HHh
Q 008735 464 KSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRGK--KCN 541 (555)
Q Consensus 464 ~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~i~a~~~~~~~~~~~~~~~~~~~--~~~ 541 (555)
+|++.|+.+|+||+++++|+ +|+.++++|++|++|++|+.+..++|++++++|+|++++.++|..+.++++..+ ..+
T Consensus 1 ~A~~~L~~Lgald~~~~lT~-lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~ 79 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTP-LGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAK 79 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-H-HHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HH
T ss_pred CHHHHHHHCCCCCCCCCcCH-HHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHH
Confidence 48899999999999999997 999999999999999999999999999999999999999999999865444333 355
Q ss_pred hhc
Q 008735 542 EIF 544 (555)
Q Consensus 542 ~~~ 544 (555)
++|
T Consensus 80 ~~~ 82 (102)
T PF04408_consen 80 KKF 82 (102)
T ss_dssp HTT
T ss_pred HHh
Confidence 555
No 127
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=5.2e-12 Score=136.98 Aligned_cols=167 Identities=21% Similarity=0.216 Sum_probs=102.8
Q ss_pred eEEEeccCC--CHHHHHhhhCCCCeEEeCCccccceEEEcCC---CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY---PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++.+||.|. ..++|.+.++ .+++.++.........+... .......+.+..+...+.. +.|+||-+.|....
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~-l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~--grPvLigt~si~~s 581 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYN-LYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRK--GNPILIGTESVEVS 581 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhC--CCCEEEEeCcHHHH
Confidence 678899998 3345655554 46777665432222222111 1123445555666666554 56899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCC-cEEEEecCccccccccCCeEEEEeCCcccceee
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF-RKVILATNIAETSVTIPGIKYVIDPGFVKARLY 374 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~-~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~y 374 (555)
+.++..|.+. ++....+++.-...|-..|-+ .|. -.|.||||+|++|.||.=-.-|..
T Consensus 582 e~ls~~L~~~---------gi~h~vLNak~~~~Ea~iia~---AG~~g~VTIATNmAGRGTDIkl~~~v~~--------- 640 (970)
T PRK12899 582 EKLSRILRQN---------RIEHTVLNAKNHAQEAEIIAG---AGKLGAVTVATNMAGRGTDIKLDEEAVA--------- 640 (970)
T ss_pred HHHHHHHHHc---------CCcceecccchhhhHHHHHHh---cCCCCcEEEeeccccCCcccccCchHHh---------
Confidence 9999999876 666666666533333233322 244 369999999999999852111111
Q ss_pred cCCCCcccc-ceeecCHHhHHHHhcccCCCC-CCEEEEccC
Q 008735 375 DPVKGMESL-LVVPISKAQALQRSGRAGREG-PGKCFRLYP 413 (555)
Q Consensus 375 d~~~~~~~l-~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 413 (555)
..|+..+ +..+-|..--.|-.|||||.| +|.+-.+.+
T Consensus 641 --~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lS 679 (970)
T PRK12899 641 --VGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLS 679 (970)
T ss_pred --cCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEE
Confidence 0111111 124567777899999999999 887655543
No 128
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=1.4e-13 Score=149.45 Aligned_cols=165 Identities=19% Similarity=0.247 Sum_probs=117.3
Q ss_pred eEEEeccCC--CHHHHHhhhCCCCeEEeCCccccceEEEcCC---CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY---PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++-+||.|. ...+|.+.++ ..++.++....-....+... .........+..+...+ ..+.++||||+|+..+
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~-L~Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~--~~grpVLIft~Sve~s 611 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYK-LDVVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQ--KKGQPVLVGTASVEVS 611 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhC-CcEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHh--hCCCCEEEEeCcHHHH
Confidence 567888888 3345555553 45666665432111111111 11122233333333333 2477899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccC---CeEEE-----EeCC
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP---GIKYV-----IDPG 367 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip---~v~~V-----Id~g 367 (555)
+.+++.|... ++....+|+ .+.+|+..+..|..+...|+||||+|+||+||+ +|..| |+
T Consensus 612 E~Ls~~L~~~---------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg-- 678 (1025)
T PRK12900 612 ETLSRMLRAK---------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG-- 678 (1025)
T ss_pred HHHHHHHHHc---------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC--
Confidence 9999999886 788888997 577889999999999999999999999999999 45333 54
Q ss_pred cccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhhH
Q 008735 368 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 368 ~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 417 (555)
++ .|-|...|.||+|||||.| +|.+..+++.++.
T Consensus 679 ------te----------rhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 679 ------SE----------RHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred ------CC----------CCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 22 5788889999999999999 9999888876543
No 129
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.49 E-value=1.1e-13 Score=112.10 Aligned_cols=88 Identities=41% Similarity=0.662 Sum_probs=78.0
Q ss_pred HHHHHHHHcCCccCCCCCCHHHHhhcccCCCChHHHHHHHHhhhc-CCHHHHHHHHHhhcCCCcccCChhhHHHHHHHhh
Q 008735 464 KSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQF-NCLEEMLITVAMLSVESIFFRSPGEVRRGKKCNE 542 (555)
Q Consensus 464 ~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~i~a~~~~~~~~~~~~~~~~~~~~~~~ 542 (555)
+|++.|..+|+||.++++|+ +|+.|+.+|++|++|++++.+..+ +|.+++++|+|+++..++|..+ ..+...+..++
T Consensus 1 ~A~~~L~~LgAld~~~~lT~-lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~ 78 (92)
T smart00847 1 AALELLYELGALDDDGRLTP-LGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARR 78 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCH-HHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHH
Confidence 37899999999999999998 999999999999999999999999 9999999999999999998877 55666777788
Q ss_pred hccCCCCCCCCC
Q 008735 543 IFCKSRWRSPHF 554 (555)
Q Consensus 543 ~~~~~~~~~~~~ 554 (555)
.|..+. .+||+
T Consensus 79 ~~~~~~-~~D~~ 89 (92)
T smart00847 79 RFASGR-ESDHL 89 (92)
T ss_pred HccCCC-CCChh
Confidence 887644 37775
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=7e-12 Score=132.68 Aligned_cols=160 Identities=21% Similarity=0.220 Sum_probs=103.0
Q ss_pred eEEEeccCC--CHHHHHhhhCCCCeEEeCCccccceEEEcCC---CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY---PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++-+||.|. ..++|.+.++ .+++.+|.........+... .......+.+..+...+. .+.|+||.+.|.+..
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~-l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~--~GrPVLVgt~sI~~S 440 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYD-LGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHE--TGQPVLVGTHDVAES 440 (764)
T ss_pred hheeecCCChhHHHHHHHHhC-CcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHH--cCCCEEEEeCCHHHH
Confidence 578899998 4456666664 45666665432211111111 112334445555555544 377899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCc-EEEEecCccccccccC---------------C
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR-KVILATNIAETSVTIP---------------G 359 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~-~vlvaT~~~e~Gvdip---------------~ 359 (555)
+.++..|.+. ++....+++.-...| .+++.. .|.. .|.||||+|++|.||. +
T Consensus 441 E~ls~~L~~~---------gI~h~vLNAk~~~~E-A~IIa~--AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~G 508 (764)
T PRK12326 441 EELAERLRAA---------GVPAVVLNAKNDAEE-ARIIAE--AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELG 508 (764)
T ss_pred HHHHHHHHhC---------CCcceeeccCchHhH-HHHHHh--cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcC
Confidence 9999999886 666777777644333 333332 2443 6999999999999985 1
Q ss_pred eEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccC
Q 008735 360 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 413 (555)
Q Consensus 360 v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 413 (555)
=-+||-+. .+-|..-=.|-.|||||.| ||.+-.+.+
T Consensus 509 GLhVIgTe------------------rheSrRID~QLrGRaGRQGDpGss~f~lS 545 (764)
T PRK12326 509 GLHVIGTG------------------RHRSERLDNQLRGRAGRQGDPGSSVFFVS 545 (764)
T ss_pred CcEEEecc------------------CCchHHHHHHHhcccccCCCCCceeEEEE
Confidence 12444322 4566667799999999999 887655543
No 131
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.44 E-value=2.4e-15 Score=157.43 Aligned_cols=458 Identities=9% Similarity=-0.187 Sum_probs=303.7
Q ss_pred hhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCC---CcEEEEeCccHHHHHHHHHHHHHHhCC
Q 008735 37 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD---GKLIGVTQPRRVAAVTVAKRVAEESGV 113 (555)
Q Consensus 37 ~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~---~~~i~~~~P~r~l~~~~~~~~~~~~~~ 113 (555)
+++..|.+.+.+.+++++..+.++++-+.||||||++.++.+++....+. -..++..+|++..+........-+...
T Consensus 401 etgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctv 480 (1282)
T KOG0921|consen 401 ETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTV 480 (1282)
T ss_pred cccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeecc
Confidence 36778999999999999999999999999999999999999988765432 234667788888777666655555554
Q ss_pred ccCCEEEEEEecCCCCCchhhH---------H-HhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCC
Q 008735 114 ELGQRVGYSIRFDDRTSTSTRI---------K-EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 183 (555)
Q Consensus 114 ~~~~~vg~~~~~~~~~~~~~~i---------~-~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~ 183 (555)
.++...+|.............+ . .++. ........+.||.|+++.++|.++.+++.+
T Consensus 481 gvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr--~m~~ty~dl~v~lmsatIdTd~f~~~f~~~----------- 547 (1282)
T KOG0921|consen 481 GVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLR--EMISTYRDLRVVLMSATIDTDLFTNFFSSI----------- 547 (1282)
T ss_pred chhhhhhhhcccccccccchhhhhhccchHHHHHHHH--hhhccchhhhhhhhhcccchhhhhhhhccc-----------
Confidence 4444444443322211111111 1 1111 234567888999999999999998887643
Q ss_pred CCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCCccccceEE-------
Q 008735 184 SNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL------- 256 (555)
Q Consensus 184 ~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~------- 256 (555)
++++++++|.+...|-.++-..+...++++.++.+..
T Consensus 548 ------------------------------------p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~ 591 (1282)
T KOG0921|consen 548 ------------------------------------PDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEED 591 (1282)
T ss_pred ------------------------------------cceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccC
Confidence 4568999999988776554444444444333222110
Q ss_pred -----------------Ec------------CCCCCChHHHHHHHHHHH------HhcCCCCcEEEEcCCHHHHHHHHHH
Q 008735 257 -----------------YT------------LYPEPDYLDATLITIFQV------HLDEAPGDILVFLTGQEEIESVERL 301 (555)
Q Consensus 257 -----------------~~------------~~~~~~~~~~~~~~~~~~------~~~~~~~~iLVF~~t~~~~~~l~~~ 301 (555)
|. ........++.+..+... ..-.+++..|+|++.+.-....-..
T Consensus 592 ~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~ 671 (1282)
T KOG0921|consen 592 EEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQ 671 (1282)
T ss_pred chhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhcc
Confidence 00 011233444433333222 2234578899999999877776665
Q ss_pred HHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCcc
Q 008735 302 VQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGME 381 (555)
Q Consensus 302 L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~ 381 (555)
+... +-++. ....+...|..+...+.+.+.+....+.+.+...|...+..|...++.+|++++-.+...+-....++
T Consensus 672 ~~~y-~ilp~--Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~s 748 (1282)
T KOG0921|consen 672 ANKY-EILPL--HSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWAS 748 (1282)
T ss_pred chhc-ccccc--hhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeeccc
Confidence 5543 11111 13456677999999999999999999999999999999999999899999999999888777666666
Q ss_pred ccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHhcccCCCCCcccccCchHHHHHHhhcCCCCccCC--cCCCCCcH
Q 008735 382 SLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGF--DFMEKPSR 459 (555)
Q Consensus 382 ~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~--~~~~~p~~ 459 (555)
.....|.+...-.||.||++|...+.||.++....+..|.....+|+........++.++.+-...+..+ +.+.+|+.
T Consensus 749 ktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~ 828 (1282)
T KOG0921|consen 749 KTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEA 828 (1282)
T ss_pred ccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchH
Confidence 6666788888899999999999999999999999999999999999888776666666555433333333 23444444
Q ss_pred HHHHHHHHHHHHcCCccCCC--CCCHHHHhhcccCCCChHHHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCChhhHHHH
Q 008735 460 ASIIKSLEQLFLLGALTDDC--KLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRG 537 (555)
Q Consensus 460 ~~~~~al~~L~~~g~l~~~~--~~T~~lG~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~i~a~~~~~~~~~~~~~~~~~~ 537 (555)
... ....|-..+.+...+ ..+. +++.....++.+..+++...+..+-..+-...+.++--...+|...--++.
T Consensus 829 ~l~--~m~~ld~n~elt~lg~~la~l-~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~-- 903 (1282)
T KOG0921|consen 829 VLR--EMGALDANDELTPLGRMLARL-PIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRK-- 903 (1282)
T ss_pred HHH--HhhhhhccCcccchhhhhhhc-cCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhh--
Confidence 433 344444444444444 4565 899999999999888877665444333333333333333344433322332
Q ss_pred HHHhhhccCCCCCCCC
Q 008735 538 KKCNEIFCKSRWRSPH 553 (555)
Q Consensus 538 ~~~~~~~~~~~~~~~~ 553 (555)
-++..|+.+++ +.|
T Consensus 904 -~~g~kfsdhva-~~~ 917 (1282)
T KOG0921|consen 904 -FAGNKFSDHVA-IVS 917 (1282)
T ss_pred -ccccccccchh-hhh
Confidence 33456666665 444
No 132
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.42 E-value=2.5e-13 Score=107.25 Aligned_cols=72 Identities=36% Similarity=0.606 Sum_probs=67.6
Q ss_pred CeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHH
Q 008735 315 KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQAL 394 (555)
Q Consensus 315 ~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~ 394 (555)
++.+..+||+++.++|..+++.|.+|..+|+++|+++++|+|+|+++.||. ++ .|.+...|.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~--------~~----------~~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII--------YD----------LPWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE--------eC----------CCCCHHHHH
Confidence 788999999999999999999999999999999999999999999999998 55 478999999
Q ss_pred HHhcccCCCC
Q 008735 395 QRSGRAGREG 404 (555)
Q Consensus 395 Qr~GRaGR~~ 404 (555)
|++||+||.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999975
No 133
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.39 E-value=4.8e-12 Score=125.55 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=83.9
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCC-CcEEEEe
Q 008735 269 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKVILA 347 (555)
Q Consensus 269 ~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~vlva 347 (555)
....+++.+.. .+.+||||....-...+.|-.| .--.+||..++.||.+|++.|+-+ .++.|+-
T Consensus 531 aCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl--------------~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 531 ACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKL--------------GKPFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred HHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHc--------------CCceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 34445555554 4778999987765444444332 233568999999999999999865 5789999
Q ss_pred cCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-------CCEEEEccChhh
Q 008735 348 TNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-------PGKCFRLYPENE 416 (555)
Q Consensus 348 T~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-------~G~~~~l~~~~~ 416 (555)
+-+..+++|+|..++.|+ ... --.|..+-.||.||.-|.. +...|.|.+++.
T Consensus 596 SKVgDtSiDLPEAnvLIQ--------ISS---------H~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQ--------ISS---------HGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred eeccCccccCCcccEEEE--------Ecc---------cccchHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 999999999999999997 211 2356677899999988876 234666665543
No 134
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.35 E-value=4.8e-10 Score=125.21 Aligned_cols=177 Identities=14% Similarity=0.185 Sum_probs=104.5
Q ss_pred ceEEEeccCCCH---HHHHhhhCCCC--eEEeCCcccc-ceEEEcC--CC------CCChHHHHHHHHHHHHhcCCCCcE
Q 008735 220 LKLIIMSASLDA---RGFSEYFGCAK--AVHVQGRQFP-VEILYTL--YP------EPDYLDATLITIFQVHLDEAPGDI 285 (555)
Q Consensus 220 ~~ii~~SAT~~~---~~~~~~~~~~~--~~~~~~~~~~-v~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~i 285 (555)
..+|++|||+.. ..+.+.+|-.. ...++ ..+. -...+.. .+ ...+.+.....+..+. ..+|++
T Consensus 574 ~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~-~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~--~~~g~~ 650 (820)
T PRK07246 574 CKTYFVSATLQISPRVSLADLLGFEEYLFHKIE-KDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELK--QLQQPI 650 (820)
T ss_pred CeEEEEecccccCCCCcHHHHcCCCccceecCC-CChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHH--hcCCCE
Confidence 578999999932 23556665321 11111 1111 1111211 11 1235555555565544 347899
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecC-CCCHHHHHhhcCcCCCCCcEEEEecCccccccccC--CeEE
Q 008735 286 LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS-SLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP--GIKY 362 (555)
Q Consensus 286 LVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~-~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip--~v~~ 362 (555)
||+.+|.+..+.+++.|... ...+. ..| +.+ +.++.+.|+++...||++|+.+-.|||+| +...
T Consensus 651 LVLFtS~~~l~~v~~~l~~~---------~~~~l-~Qg~~~~---~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~ 717 (820)
T PRK07246 651 LVLFNSKKHLLAVSDLLDQW---------QVSHL-AQEKNGT---AYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMI 717 (820)
T ss_pred EEEECcHHHHHHHHHHHhhc---------CCcEE-EeCCCcc---HHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEE
Confidence 99999999999999888643 22332 223 222 45578889888889999999999999997 3444
Q ss_pred EEeCCcccceeecC----------CCCcccc--ceeecCHHhHHHHhcccCCCC--CCEEEEcc
Q 008735 363 VIDPGFVKARLYDP----------VKGMESL--LVVPISKAQALQRSGRAGREG--PGKCFRLY 412 (555)
Q Consensus 363 VId~g~~~~~~yd~----------~~~~~~l--~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l~ 412 (555)
||=.++.=..-.|| ..|-+.+ ...|.....+.|-+||.=|.. .|.++.+-
T Consensus 718 viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD 781 (820)
T PRK07246 718 EVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILD 781 (820)
T ss_pred EEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 44344432111111 0111111 223556778999999999988 68766654
No 135
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.30 E-value=4.8e-11 Score=110.96 Aligned_cols=75 Identities=24% Similarity=0.169 Sum_probs=62.1
Q ss_pred hcCCCcHHHHHHHHHHHhcC-CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhC
Q 008735 38 RKSLPIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 112 (555)
Q Consensus 38 ~~~l~~~~~Q~~~i~~i~~~-~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~ 112 (555)
....+++++|.++++.+... +++++.||||||||+.+..++...........++++.|++.++.+..+.+.....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 35667899999999999998 9999999999999987777776665444346799999999999988888776654
No 136
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.29 E-value=6.9e-11 Score=127.86 Aligned_cols=277 Identities=12% Similarity=0.029 Sum_probs=157.1
Q ss_pred EEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhC-CccCCEEEEEEecCCCCCchhhHHHhh
Q 008735 61 IIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG-VELGQRVGYSIRFDDRTSTSTRIKEAL 139 (555)
Q Consensus 61 ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~-~~~~~~vg~~~~~~~~~~~~~~i~~~~ 139 (555)
+..+.+|||||.....++..... .|+.++++.|...++.|+.+++...++ .. +. .+++..+...+...|.
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~--~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~----v~---~lhS~l~~~~R~~~w~ 234 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR--AGRGALVVVPDQRDVDRLEAALRALLGAGD----VA---VLSAGLGPADRYRRWL 234 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH--cCCeEEEEecchhhHHHHHHHHHHHcCCCc----EE---EECCCCCHHHHHHHHH
Confidence 33444699999766666544322 366799999999999999999988886 22 21 2455666666666444
Q ss_pred c---CC-------------CCCCCceeEeecccccccchhHHHH-HHHHHHHhhcccccCCCCCCCCCCcchhhhccCCC
Q 008735 140 L---DP-------------YLSRYSAIIVDEAHERTVHTDVLLG-LLKKVQNARSKSADGHSNGNNNNENSDMILDRGND 202 (555)
Q Consensus 140 ~---~~-------------~l~~~~~iIiDE~He~~~~~d~ll~-~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~ 202 (555)
. .. -+.++++|||||-|+.+...+.... -.+++...|.+
T Consensus 235 ~~~~G~~~IViGtRSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~------------------------ 290 (665)
T PRK14873 235 AVLRGQARVVVGTRSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH------------------------ 290 (665)
T ss_pred HHhCCCCcEEEEcceeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH------------------------
Confidence 3 11 1688999999999965544332211 12222222200
Q ss_pred CcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCC-CCeEEeC----Ccccc-ceEEEcCC------CCC---ChHH
Q 008735 203 TNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGC-AKAVHVQ----GRQFP-VEILYTLY------PEP---DYLD 267 (555)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~-~~~~~~~----~~~~~-v~~~~~~~------~~~---~~~~ 267 (555)
..+..+|+.|||++.+.+.....+ ...+... ....| +...-... +.. ....
T Consensus 291 --------------~~~~~lvLgSaTPSles~~~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~ 356 (665)
T PRK14873 291 --------------QHGCALLIGGHARTAEAQALVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPS 356 (665)
T ss_pred --------------HcCCcEEEECCCCCHHHHHHHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCH
Confidence 067899999999998876532211 1101000 01111 11111100 000 1222
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCHH------------------------------------------------------
Q 008735 268 ATLITIFQVHLDEAPGDILVFLTGQE------------------------------------------------------ 293 (555)
Q Consensus 268 ~~~~~~~~~~~~~~~~~iLVF~~t~~------------------------------------------------------ 293 (555)
..+..+.+... .|++|||+|.+.
T Consensus 357 ~l~~~i~~~L~---~gqvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l 433 (665)
T PRK14873 357 LAFRAARDALE---HGPVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRL 433 (665)
T ss_pred HHHHHHHHHHh---cCcEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcc
Confidence 23333333222 339999999983
Q ss_pred -----HHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecC----ccccccccCCeEEE-
Q 008735 294 -----EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN----IAETSVTIPGIKYV- 363 (555)
Q Consensus 294 -----~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~----~~e~Gvdip~v~~V- 363 (555)
.++++++.|.+.++ +..+..+. +..+++.|. ++..|||+|. +++ ++++.|
T Consensus 434 ~~~g~Gter~eeeL~~~FP-------~~~V~r~d-------~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ 493 (665)
T PRK14873 434 RAVVVGARRTAEELGRAFP-------GVPVVTSG-------GDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAAL 493 (665)
T ss_pred eeeeccHHHHHHHHHHHCC-------CCCEEEEC-------hHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEE
Confidence 34555555555433 33343322 234677786 5899999999 555 244444
Q ss_pred -EeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChh
Q 008735 364 -IDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 415 (555)
Q Consensus 364 -Id~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 415 (555)
+| -|..-+...+.........+.|-+|||||.. +|.++..+.++
T Consensus 494 ild--------aD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~ 539 (665)
T PRK14873 494 LLD--------AWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESS 539 (665)
T ss_pred EEc--------chhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCC
Confidence 44 3333333334444556677899999999987 89888775443
No 137
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=1.4e-10 Score=126.04 Aligned_cols=159 Identities=23% Similarity=0.222 Sum_probs=98.7
Q ss_pred eEEEeccCCC--HHHHHhhhCCCCeEEeCCccccceEEEcCC---CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTLY---PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++-+||.|.. .++|.+.++ .+++.++.........+... .........+..+...+. .+.|+||-+.|.+..
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~-l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~--~GrPVLVGT~SVe~S 462 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYG-LDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMA--LGRPVLVGTATIETS 462 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhC-CCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHh--CCCCEEEEeCCHHHH
Confidence 5788999983 345666553 56777765432221111111 112334455555555554 377899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCC-cEEEEecCccccccccC----------------
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF-RKVILATNIAETSVTIP---------------- 358 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~-~~vlvaT~~~e~Gvdip---------------- 358 (555)
+.++++|.+. ++..-.+++.....|- +|+. ..|. -.|.||||+|+||.||.
T Consensus 463 E~ls~~L~~~---------gi~h~VLNAk~~~~EA-~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~ 530 (913)
T PRK13103 463 EHMSNLLKKE---------GIEHKVLNAKYHEKEA-EIIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPT 530 (913)
T ss_pred HHHHHHHHHc---------CCcHHHhccccchhHH-HHHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhh
Confidence 9999999886 5544445554333332 3333 2353 36999999999999984
Q ss_pred ---------------------CeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEcc
Q 008735 359 ---------------------GIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 412 (555)
Q Consensus 359 ---------------------~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~ 412 (555)
+=-+||- +..+-|..-=.|-.|||||.| ||.+-.+.
T Consensus 531 ~~~~~~~~~~~~~~~e~V~e~GGLhVIg------------------TerheSrRID~QLrGRaGRQGDPGsS~f~l 588 (913)
T PRK13103 531 PEQIAQIKADWQKRHQQVIEAGGLHVIA------------------SERHESRRIDNQLRGRAGRQGDPGSSRFYL 588 (913)
T ss_pred HHHHHHHHHHHHhHHHHHHHcCCCEEEe------------------eccCchHHHHHHhccccccCCCCCceEEEE
Confidence 1113332 223556666689999999999 88755444
No 138
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=7.9e-10 Score=118.99 Aligned_cols=158 Identities=21% Similarity=0.226 Sum_probs=99.3
Q ss_pred eEEEeccCCCH--HHHHhhhCCCCeEEeCCccccceEEEcCC---CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASLDA--RGFSEYFGCAKAVHVQGRQFPVEILYTLY---PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++-+||.|... ++|.+.+ +..++.++.........+... .......+.+..+...+. .+.|+||.|.|.+..
T Consensus 363 kLsGMTGTA~te~~Ef~~iY-~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~--~gqPVLVgT~SIe~S 439 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIY-NMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHK--KGQPILIGTAQVEDS 439 (925)
T ss_pred hhhccCCCCHHHHHHHHHHh-CCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHH
Confidence 56788888833 3455554 355677665432222221111 122334445555555553 377899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCC-cEEEEecCccccccccCCeE--------EEEeC
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF-RKVILATNIAETSVTIPGIK--------YVIDP 366 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~-~~vlvaT~~~e~Gvdip~v~--------~VId~ 366 (555)
+.++..|.+. ++..-.+++.-...|- .++. ..|. -.|.||||+|+||.||.--. +||-+
T Consensus 440 E~ls~~L~~~---------gi~h~vLNAk~~e~EA-~IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgT 507 (925)
T PRK12903 440 ETLHELLLEA---------NIPHTVLNAKQNAREA-EIIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGT 507 (925)
T ss_pred HHHHHHHHHC---------CCCceeecccchhhHH-HHHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEec
Confidence 9999999886 6666666765333332 3333 3454 47999999999999996222 66643
Q ss_pred CcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEc
Q 008735 367 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 411 (555)
Q Consensus 367 g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l 411 (555)
. .+-|..-=.|-.|||||.| ||.+-.+
T Consensus 508 e------------------rheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 508 D------------------KAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred c------------------cCchHHHHHHHhcccccCCCCCcceEE
Confidence 3 2444445579999999999 8864433
No 139
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.21 E-value=4.5e-11 Score=110.09 Aligned_cols=66 Identities=11% Similarity=0.139 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHHHHhc-------CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHh
Q 008735 41 LPIASVEKRLVEEVRK-------NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 111 (555)
Q Consensus 41 l~~~~~Q~~~i~~i~~-------~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~ 111 (555)
+.++++|++++..+.+ ++.+++.+|||||||.++..++..... .++++.|+..++.|....+....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~~~~ 74 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNISLLEQWYDEFDDFG 74 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHHHhh
Confidence 4678999999999884 689999999999999776655555432 78888999999999988874443
No 140
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.21 E-value=1.8e-11 Score=104.11 Aligned_cols=111 Identities=24% Similarity=0.247 Sum_probs=69.3
Q ss_pred hcCCeEEEEcCCCCchhh-HHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCC-----
Q 008735 55 RKNDILIIVGETGSGKTT-QLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDR----- 128 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~-~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~----- 128 (555)
.+|+..+|..++|+|||+ .+|.++.+... .+.+++++.|+|.++..+.+.+... .+.+.......
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~rvLvL~PTRvva~em~~aL~~~-------~~~~~t~~~~~~~~g~ 72 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIK--RRLRVLVLAPTRVVAEEMYEALKGL-------PVRFHTNARMRTHFGS 72 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHH--TT--EEEEESSHHHHHHHHHHTTTS-------SEEEESTTSS----SS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHH--ccCeEEEecccHHHHHHHHHHHhcC-------CcccCceeeeccccCC
Confidence 467889999999999996 57777765532 3678999999999999988876422 12222211100
Q ss_pred --C---CchhhHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHH
Q 008735 129 --T---STSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 174 (555)
Q Consensus 129 --~---~~~~~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~ 174 (555)
+ ...+....++......++++||+||||..+..+-...++++....
T Consensus 73 ~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~ 123 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE 123 (148)
T ss_dssp SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH
T ss_pred CcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhh
Confidence 0 111211233333457899999999999988888888888877643
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.18 E-value=7.5e-09 Score=117.80 Aligned_cols=141 Identities=19% Similarity=0.226 Sum_probs=91.0
Q ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcE
Q 008735 264 DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRK 343 (555)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~ 343 (555)
.+.......+..+... .+|++|||.+|.+..+.+++.|...... .++.+.. . +++...|.++++.|+.++-.
T Consensus 735 ~~~~~la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~~-----~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~ 806 (928)
T PRK08074 735 EYIEEVAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEEL-----EGYVLLA-Q-GVSSGSRARLTKQFQQFDKA 806 (928)
T ss_pred HHHHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhcccc-----cCceEEe-c-CCCCCCHHHHHHHHHhcCCe
Confidence 3445555555555443 4788999999999999999999764210 1222222 2 33334577888889888889
Q ss_pred EEEecCccccccccCC--eEEEEeCCcccceeecC----------CCCcccc--ceeecCHHhHHHHhcccCCCC--CCE
Q 008735 344 VILATNIAETSVTIPG--IKYVIDPGFVKARLYDP----------VKGMESL--LVVPISKAQALQRSGRAGREG--PGK 407 (555)
Q Consensus 344 vlvaT~~~e~Gvdip~--v~~VId~g~~~~~~yd~----------~~~~~~l--~~~p~s~~~~~Qr~GRaGR~~--~G~ 407 (555)
||++|..+..|||+|+ +++||-.++.=..-=|| ..|-+.+ ...|.....+.|-+||.=|.. .|.
T Consensus 807 iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~ 886 (928)
T PRK08074 807 ILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT 886 (928)
T ss_pred EEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE
Confidence 9999999999999996 46666545432100010 0111111 123556778899999999988 676
Q ss_pred EEEcc
Q 008735 408 CFRLY 412 (555)
Q Consensus 408 ~~~l~ 412 (555)
++.+-
T Consensus 887 v~ilD 891 (928)
T PRK08074 887 VFVLD 891 (928)
T ss_pred EEEec
Confidence 66553
No 142
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.17 E-value=3.7e-10 Score=98.62 Aligned_cols=102 Identities=29% Similarity=0.305 Sum_probs=64.6
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCC-------
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTS------- 130 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~------- 130 (555)
+++++.+|||+|||+++..++..........+++++.|++.++.+..+.+...... ...+.+.........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 46899999999999888777766654445568999999999999998887776642 233333332221110
Q ss_pred -------chhhHHHhhcC--CCCCCCceeEeecccccccc
Q 008735 131 -------TSTRIKEALLD--PYLSRYSAIIVDEAHERTVH 161 (555)
Q Consensus 131 -------~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~ 161 (555)
+...+...... .....++++|+||+|.....
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~ 118 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQ 118 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhc
Confidence 01111111111 13457899999999964433
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.16 E-value=2e-09 Score=116.66 Aligned_cols=124 Identities=20% Similarity=0.182 Sum_probs=77.3
Q ss_pred eEEEeccCCC--HHHHHhhhCCCCeEEeCCccccceEEEcCC---CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTLY---PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++.+||.|.. .++|.+.++ ..++.+|.........+... .......+.+..+...+. .+.|+||-+.|.+..
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~-l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~--~grPVLIgT~SIe~S 437 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYN-LEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQ--TGRPILIGTTTIEKS 437 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHh--cCCCEEEeeCCHHHH
Confidence 5788998883 335555553 45666665432222222111 112233445555555444 367899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCC-CHHHHHhhcCcCCCCCc-EEEEecCccccccccC
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSL-PSEQQMRVFAPAAAGFR-KVILATNIAETSVTIP 358 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l-~~~~r~~i~~~f~~g~~-~vlvaT~~~e~Gvdip 358 (555)
+.++..|.+. ++..-.+++.- ..++-.+|+.. .|.. .|.||||+|+||.||.
T Consensus 438 E~ls~~L~~~---------gi~h~vLNAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 438 ELLSQLLKEY---------RLPHQLLNAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred HHHHHHHHHc---------CCccceeeCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 9999999886 66667777752 22222334433 2443 6999999999999984
No 144
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.02 E-value=2.8e-08 Score=104.15 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=88.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCC---cEEEEecCcccccccc
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF---RKVILATNIAETSVTI 357 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~---~~vlvaT~~~e~Gvdi 357 (555)
.+.++|||-.=.....-+.++..-+ ++...-+.|+++.++|...++.|.... .-.+++|-+.+.|||+
T Consensus 486 ~GhRVLIFSQmt~mLDILeDyc~~R---------~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL 556 (971)
T KOG0385|consen 486 QGHRVLIFSQMTRMLDILEDYCMLR---------GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINL 556 (971)
T ss_pred CCCeEEEeHHHHHHHHHHHHHHHhc---------CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccc
Confidence 4778999965554444444444333 888999999999999999999987543 4568999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHh
Q 008735 358 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 418 (555)
Q Consensus 358 p~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 418 (555)
-..++||- ||+..+ |..--++.+|+-|.|-..+=.+|+|+++...+
T Consensus 557 ~aADtVIl--------yDSDWN-------PQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 557 TAADTVIL--------YDSDWN-------PQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred ccccEEEE--------ecCCCC-------chhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 99999997 886554 55556677777777777788999999877554
No 145
>COG4889 Predicted helicase [General function prediction only]
Probab=98.95 E-value=4e-09 Score=111.44 Aligned_cols=106 Identities=16% Similarity=0.236 Sum_probs=79.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHhh----cCC--CCCCCeEEEEecCCCCHHHHHhhc---CcCCCCCcEEEEecCccccc
Q 008735 284 DILVFLTGQEEIESVERLVQERLL----QLP--EASRKLVTVPIFSSLPSEQQMRVF---APAAAGFRKVILATNIAETS 354 (555)
Q Consensus 284 ~iLVF~~t~~~~~~l~~~L~~~~~----~~~--~~~~~~~v~~lh~~l~~~~r~~i~---~~f~~g~~~vlvaT~~~e~G 354 (555)
+.+-||.+.+...++++.+..... ++. .....+.+-...|.|...+|...+ ..|...+.+||----.+..|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 477888888887777766655432 111 122345566667889988886544 35677888999888899999
Q ss_pred cccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCE
Q 008735 355 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGK 407 (555)
Q Consensus 355 vdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~ 407 (555)
||+|..+-||- |||. .|..+.+|-+||+-|..+|+
T Consensus 542 VDVPaLDsViF--------f~pr----------~smVDIVQaVGRVMRKa~gK 576 (1518)
T COG4889 542 VDVPALDSVIF--------FDPR----------SSMVDIVQAVGRVMRKAKGK 576 (1518)
T ss_pred CCccccceEEE--------ecCc----------hhHHHHHHHHHHHHHhCcCC
Confidence 99999999997 7853 45667899999999988665
No 146
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.94 E-value=8.4e-08 Score=101.06 Aligned_cols=114 Identities=17% Similarity=0.305 Sum_probs=90.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCc--EEEEecCccccccccCC
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR--KVILATNIAETSVTIPG 359 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~--~vlvaT~~~e~Gvdip~ 359 (555)
+.++|+|..++....-+...|... .++...-+.|..+...|..+++.|.++.. -.|++|-+.+.|+|+-+
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~~--------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTg 617 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRRA--------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTG 617 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHhc--------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccccccccccc
Confidence 558999999999888888888741 28999999999999999999999998764 35889999999999987
Q ss_pred eEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHh
Q 008735 360 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 418 (555)
Q Consensus 360 v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 418 (555)
.+-||- |||..+ |.+-.++.-|+=|-|-...=.+|+|.+....+
T Consensus 618 AnRVII--------fDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 618 ANRVII--------FDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred CceEEE--------ECCCCC-------CccchHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 777775 998765 45445555566565555567799998765544
No 147
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.90 E-value=1.6e-07 Score=100.93 Aligned_cols=294 Identities=19% Similarity=0.157 Sum_probs=158.3
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCc--h
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST--S 132 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~--~ 132 (555)
......+|-+|.|||||+.+..|+.... ..+...++++.-++.++.+...++....- ...+-|....+..... .
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l-~~~~~~VLvVShRrSL~~sL~~rf~~~~l---~gFv~Y~d~~~~~i~~~~~ 122 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDAL-KNPDKSVLVVSHRRSLTKSLAERFKKAGL---SGFVNYLDSDDYIIDGRPY 122 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhc-cCCCCeEEEEEhHHHHHHHHHHHHhhcCC---Ccceeeecccccccccccc
Confidence 3556889999999999998877776642 23466899999999999999988754321 1122232221111111 0
Q ss_pred hh----HHHh--hcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCccc
Q 008735 133 TR----IKEA--LLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGI 206 (555)
Q Consensus 133 ~~----i~~~--~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 206 (555)
.+ +..+ +..+.+.++++|||||+-. +++++.+.. | .+.....
T Consensus 123 ~rLivqIdSL~R~~~~~l~~yDvVIIDEv~s----------vL~qL~S~T-------------------m---~~~~~v~ 170 (824)
T PF02399_consen 123 DRLIVQIDSLHRLDGSLLDRYDVVIIDEVMS----------VLNQLFSPT-------------------M---RQREEVD 170 (824)
T ss_pred CeEEEEehhhhhcccccccccCEEEEehHHH----------HHHHHhHHH-------------------H---hhHHHHH
Confidence 11 1111 1234577899999999841 111111000 0 0000111
Q ss_pred chhhhccccCCCCceEEEeccCCCHHH---HHhhhCCCCeEEeCCcc----cc-ceEEEcCC------------------
Q 008735 207 NTLKQCQGRKFAPLKLIIMSASLDARG---FSEYFGCAKAVHVQGRQ----FP-VEILYTLY------------------ 260 (555)
Q Consensus 207 ~~l~~~~~~~~~~~~ii~~SAT~~~~~---~~~~~~~~~~~~~~~~~----~~-v~~~~~~~------------------ 260 (555)
.++..+-. ...++|+|-||++... ++..-++.++..+.+.. +. -...+...
T Consensus 171 ~~L~~lI~---~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~ 247 (824)
T PF02399_consen 171 NLLKELIR---NAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENAD 247 (824)
T ss_pred HHHHHHHH---hCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccc
Confidence 11222211 3347888999986543 33333333322221110 00 00000000
Q ss_pred --C-------------CCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCC
Q 008735 261 --P-------------EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 325 (555)
Q Consensus 261 --~-------------~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 325 (555)
+ ...........+..-.. .+.+|-||++|..-++.+++..+.. ...+..++|.-
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~---------~~~Vl~l~s~~ 316 (824)
T PF02399_consen 248 TSPTPKHSPDPTATAAISNDETTFFSELLARLN--AGKNICVFSSTVSFAEIVARFCARF---------TKKVLVLNSTD 316 (824)
T ss_pred cCCCcCCCCccccccccccchhhHHHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhc---------CCeEEEEcCCC
Confidence 0 00011122222222222 2667889999999999888888765 56677777766
Q ss_pred CHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCC
Q 008735 326 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP 405 (555)
Q Consensus 326 ~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~ 405 (555)
+.. .+.. =++.+|++=|+++..|+++....+=--+++.+.. ..-.+..+..|++||+=....
T Consensus 317 ~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~------------~~gpd~~s~~Q~lgRvR~l~~ 378 (824)
T PF02399_consen 317 KLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPM------------SYGPDMVSVYQMLGRVRSLLD 378 (824)
T ss_pred Ccc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEEecCC------------CCCCcHHHHHHHHHHHHhhcc
Confidence 555 2221 2568999999999999999644221111111111 112456678999999976667
Q ss_pred CEEEEccChhh
Q 008735 406 GKCFRLYPENE 416 (555)
Q Consensus 406 G~~~~l~~~~~ 416 (555)
.+.|..++...
T Consensus 379 ~ei~v~~d~~~ 389 (824)
T PF02399_consen 379 NEIYVYIDASG 389 (824)
T ss_pred CeEEEEEeccc
Confidence 77777665443
No 148
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.89 E-value=9.5e-07 Score=94.90 Aligned_cols=136 Identities=18% Similarity=0.130 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCC----C
Q 008735 265 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA----G 340 (555)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~----g 340 (555)
+.+.....+..+... .+|.+||.+.|+...+.+++.|...+ .+.+ ...|..+ .+..+++.|++ |
T Consensus 454 ~~~~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l--------~~~~-l~qg~~~--~~~~l~~~f~~~~~~~ 521 (636)
T TIGR03117 454 WLENVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGI--------PAEI-VIQSEKN--RLASAEQQFLALYANG 521 (636)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhc--------CCCE-EEeCCCc--cHHHHHHHHHHhhcCC
Confidence 444455555555443 37789999999999999999997753 2333 3355443 23445566655 5
Q ss_pred CcEEEEecCcccccccc----------CCeEEEEeCCcccceeecCC--------CCccccceeecCHHhHHHHhcccCC
Q 008735 341 FRKVILATNIAETSVTI----------PGIKYVIDPGFVKARLYDPV--------KGMESLLVVPISKAQALQRSGRAGR 402 (555)
Q Consensus 341 ~~~vlvaT~~~e~Gvdi----------p~v~~VId~g~~~~~~yd~~--------~~~~~l~~~p~s~~~~~Qr~GRaGR 402 (555)
...||++|+.+-.|||+ +.+++||-.-+.=. .=||. .|-..+...|.....+.|-+||-=|
T Consensus 522 ~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~-~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR 600 (636)
T TIGR03117 522 IQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFG-LNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVR 600 (636)
T ss_pred CCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCC-cCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceee
Confidence 78999999999999999 24666652111100 01111 2222233346666778888888888
Q ss_pred CC----CCEEEEccC
Q 008735 403 EG----PGKCFRLYP 413 (555)
Q Consensus 403 ~~----~G~~~~l~~ 413 (555)
.. .|....|-+
T Consensus 601 ~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 601 HPDMPQNRRIHMLDG 615 (636)
T ss_pred cCCCcCceEEEEEeC
Confidence 65 355554443
No 149
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.86 E-value=1.2e-07 Score=102.95 Aligned_cols=124 Identities=20% Similarity=0.157 Sum_probs=78.2
Q ss_pred eEEEeccCCC--HHHHHhhhCCCCeEEeCCccccceEEEcCC---CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTLY---PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++-+||.|.. .++|.+.++ .+++.++.........+... .........+..+...+. .+.|+||-+.|.+..
T Consensus 376 kLsGMTGTa~te~~Ef~~iY~-l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~--~GrPVLIgT~SVe~S 452 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTYK-LEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHK--QGRPVLVGTTSVEKS 452 (939)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHh--CCCCEEEeeCCHHHH
Confidence 6788999983 345666653 56777765432222222111 112334445555555544 377899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCC-CCHHHHHhhcCcCCCCCc-EEEEecCccccccccC
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSS-LPSEQQMRVFAPAAAGFR-KVILATNIAETSVTIP 358 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~-l~~~~r~~i~~~f~~g~~-~vlvaT~~~e~Gvdip 358 (555)
+.+++.|.+. ++..-.+++. ...+.-.+|+.. .|.. .|-||||+|+||-||.
T Consensus 453 E~ls~~L~~~---------gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 453 ELLSALLQEQ---------GIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHHHHHHHHc---------CCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 9999999986 6666667775 232222334433 3543 6999999999999974
No 150
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.79 E-value=3.7e-09 Score=114.03 Aligned_cols=210 Identities=14% Similarity=0.230 Sum_probs=136.4
Q ss_pred HHHHHHHHHh-cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEe
Q 008735 46 VEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIR 124 (555)
Q Consensus 46 ~Q~~~i~~i~-~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~ 124 (555)
.|.+++..+. .+.+.++-+|||+|||..+...+.......++.+++++.|..+++....+++....... |..++-
T Consensus 931 ~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie--- 1006 (1230)
T KOG0952|consen 931 IQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIE--- 1006 (1230)
T ss_pred ccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeEe---
Confidence 4555554433 35678889999999998777777766666677899999999999998888887766544 433321
Q ss_pred cCCCCCc--------------hh----hHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCC
Q 008735 125 FDDRTST--------------ST----RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNG 186 (555)
Q Consensus 125 ~~~~~~~--------------~~----~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~ 186 (555)
.++.+.. .. ..+.|.....++.++.+|+||.|
T Consensus 1007 ~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~h------------------------------ 1056 (1230)
T KOG0952|consen 1007 LTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIH------------------------------ 1056 (1230)
T ss_pred ccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccc------------------------------
Confidence 1111111 11 11245556678899999999999
Q ss_pred CCCCCcchhhhccCCCCcccchhhhccc---cCCCCceEEEeccCC-CHHHHHhhhCCCCeEEe--CCccccceEEEcCC
Q 008735 187 NNNNENSDMILDRGNDTNGINTLKQCQG---RKFAPLKLIIMSASL-DARGFSEYFGCAKAVHV--QGRQFPVEILYTLY 260 (555)
Q Consensus 187 ~~~~~~~d~~l~~~~~~~~~~~l~~~~~---~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~ 260 (555)
++..++++.++.+.++... .....+|.+++|--+ ++.++++|++..+.+.. ..++.|.+.++...
T Consensus 1057 ---------llg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gf 1127 (1230)
T KOG0952|consen 1057 ---------LLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGF 1127 (1230)
T ss_pred ---------cccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCcCCCCcccccCCceEeecCC
Confidence 4555666666665555533 223667888887555 99999999987766333 44556667777666
Q ss_pred CCCChHHHHHH----HHHHHHhcCCCCcEEEEcCCHHHHHHH
Q 008735 261 PEPDYLDATLI----TIFQVHLDEAPGDILVFLTGQEEIESV 298 (555)
Q Consensus 261 ~~~~~~~~~~~----~~~~~~~~~~~~~iLVF~~t~~~~~~l 298 (555)
+...|...+.. ....+....+..++|||+.++....--
T Consensus 1128 p~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlt 1169 (1230)
T KOG0952|consen 1128 PGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLT 1169 (1230)
T ss_pred CchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccc
Confidence 66333332221 222233445678899999998754433
No 151
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.67 E-value=2e-06 Score=92.86 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=65.8
Q ss_pred CeEEEEecCCCCHHHHHhhcCcCCCCC--cE-EEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHH
Q 008735 315 KLVTVPIFSSLPSEQQMRVFAPAAAGF--RK-VILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKA 391 (555)
Q Consensus 315 ~~~v~~lh~~l~~~~r~~i~~~f~~g~--~~-vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~ 391 (555)
++.+..+||.|+..+|..+++.|.+-. .+ .+.+|-+.+.||++=+.+.||- ||+. ..++
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil--------~D~d----------WNPa 680 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL--------FDPD----------WNPA 680 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE--------eCCC----------CCch
Confidence 889999999999999999999997542 24 5667889999999987777776 8854 4456
Q ss_pred hHHHHhcccCCCC---CCEEEEccChh
Q 008735 392 QALQRSGRAGREG---PGKCFRLYPEN 415 (555)
Q Consensus 392 ~~~Qr~GRaGR~~---~G~~~~l~~~~ 415 (555)
.=.|-++||=|.| +=..|+|.+..
T Consensus 681 ~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 681 VDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred hHHHHHHHhccCCCcceEEEEEeecCC
Confidence 6788899999998 44577777544
No 152
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.40 E-value=7.6e-06 Score=90.46 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=98.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCC---CCcEEEEecCcccccccc
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA---GFRKVILATNIAETSVTI 357 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~---g~~~vlvaT~~~e~Gvdi 357 (555)
.+.+||||-.=.....-|+++|..+ ++...-+.|++..+.|...+..|.. .....|+||-+.+.|||+
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r---------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINL 768 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLR---------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINL 768 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHc---------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccc
Confidence 3678999988888888888888776 8889999999999999999999875 346789999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEccChhhHhc--ccCCCCCcccccC
Q 008735 358 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEFDK--LEDSTKPEIKRCN 432 (555)
Q Consensus 358 p~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~--~~~~~~pei~~~~ 432 (555)
-..+.||- ||+..+ +.+=+|-..||.|-| .=.+|||.++..++. +.... +...
T Consensus 769 atADTVII--------FDSDWN----------PQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk----~Kmv 826 (1373)
T KOG0384|consen 769 ATADTVII--------FDSDWN----------PQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAK----LKMV 826 (1373)
T ss_pred cccceEEE--------eCCCCC----------cchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHH----HHhh
Confidence 97777775 885433 234466666777766 457999999888764 22211 3345
Q ss_pred chHHHHHHhh
Q 008735 433 LSNVILQLKA 442 (555)
Q Consensus 433 l~~~~l~l~~ 442 (555)
|+..+++...
T Consensus 827 LD~aVIQ~m~ 836 (1373)
T KOG0384|consen 827 LDHAVIQRMD 836 (1373)
T ss_pred hHHHHHHhhc
Confidence 6666666544
No 153
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.30 E-value=2.8e-06 Score=93.52 Aligned_cols=159 Identities=24% Similarity=0.222 Sum_probs=100.9
Q ss_pred eEEEeccCCC--HHHHHhhhCCCCeEEeCCccccceEEEcCC---CCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTLY---PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++-+||.|.. ..+|.+.++ .+++.++...--....+... .......+.+..+...+. .+.|+||-+.|.+..
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~-L~Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~--~GrPVLVGT~SVe~S 641 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYK-LDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSE--AGRPVLVGTTSVEIS 641 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CCEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHH--CCCCEEEEeCcHHHH
Confidence 5678888883 345655553 45777765432221111111 122334555666666664 377899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCc-EEEEecCccccccccC--------CeEEEEeC
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR-KVILATNIAETSVTIP--------GIKYVIDP 366 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~-~vlvaT~~~e~Gvdip--------~v~~VId~ 366 (555)
+.++++|... ++..-.+++.....|-.-|-++ |.. .|-||||+|+||.||. +=-+||-+
T Consensus 642 E~lS~~L~~~---------gI~H~VLNAK~h~~EAeIVA~A---G~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgT 709 (1112)
T PRK12901 642 ELLSRMLKMR---------KIPHNVLNAKLHQKEAEIVAEA---GQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGT 709 (1112)
T ss_pred HHHHHHHHHc---------CCcHHHhhccchhhHHHHHHhc---CCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEc
Confidence 9999999886 5554455554333333333333 433 6899999999999996 22344432
Q ss_pred CcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEcc
Q 008735 367 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 412 (555)
Q Consensus 367 g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~ 412 (555)
. .+-|..--.|-.|||||.| ||.+-.+.
T Consensus 710 e------------------rheSrRID~QLrGRaGRQGDPGsS~f~l 738 (1112)
T PRK12901 710 E------------------RHESRRVDRQLRGRAGRQGDPGSSQFYV 738 (1112)
T ss_pred c------------------CCCcHHHHHHHhcccccCCCCCcceEEE
Confidence 2 4566777799999999999 88754433
No 154
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.19 E-value=8e-05 Score=75.10 Aligned_cols=77 Identities=22% Similarity=0.299 Sum_probs=65.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCC-cEE-EEecCcccccccc
Q 008735 280 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF-RKV-ILATNIAETSVTI 357 (555)
Q Consensus 280 ~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~-~~v-lvaT~~~e~Gvdi 357 (555)
.++.+.+||+.-..-.+.+...+.++ ++...-+.|..+..+|....+.|...+ ++| +++-.++..|+|+
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r---------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~ 560 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKR---------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTL 560 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHc---------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceee
Confidence 34567999999998888888888886 888888999999999999999998654 454 7778899999999
Q ss_pred CCeEEEEe
Q 008735 358 PGIKYVID 365 (555)
Q Consensus 358 p~v~~VId 365 (555)
-..+.||-
T Consensus 561 tAa~~VVF 568 (689)
T KOG1000|consen 561 TAASVVVF 568 (689)
T ss_pred eccceEEE
Confidence 99999984
No 155
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.11 E-value=9.9e-05 Score=81.81 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=83.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCC-CcEE-EEecCccccccccCC
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKV-ILATNIAETSVTIPG 359 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~v-lvaT~~~e~Gvdip~ 359 (555)
+.++||||.=+....-+.+-|-+. ..+.+.-.-+.|+.++.+|.++.++|.++ .++| +++|.+.+.|+|+-+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~------~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTG 1413 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKK------YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTG 1413 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhh------hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCC
Confidence 357999999998888776555432 12356666889999999999999999998 6766 667899999999999
Q ss_pred eEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCC---CEEEEccChhhHh
Q 008735 360 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP---GKCFRLYPENEFD 418 (555)
Q Consensus 360 v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~---G~~~~l~~~~~~~ 418 (555)
.+.||- ++.. |- +..=+|-+-||.|-|. =-+|||.++...+
T Consensus 1414 ADTVVF--------vEHD---------WN-PMrDLQAMDRAHRIGQKrvVNVyRlItrGTLE 1457 (1549)
T KOG0392|consen 1414 ADTVVF--------VEHD---------WN-PMRDLQAMDRAHRIGQKRVVNVYRLITRGTLE 1457 (1549)
T ss_pred CceEEE--------EecC---------CC-chhhHHHHHHHHhhcCceeeeeeeehhcccHH
Confidence 999994 3321 11 1122777777777773 3488888876554
No 156
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.09 E-value=2.3e-05 Score=72.57 Aligned_cols=93 Identities=24% Similarity=0.276 Sum_probs=56.7
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 137 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~ 137 (555)
+.++++||||+||||.+..+.........+..++.+-..|..+.++.+.+++.++..+. . .............
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~-----~--~~~~~~~~~~~~~ 74 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFY-----V--ARTESDPAEIARE 74 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEE-----E--SSTTSCHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccc-----h--hhcchhhHHHHHH
Confidence 46889999999999888777766554433444555667788898888888888874321 0 0111111122222
Q ss_pred hhcCCCCCCCceeEeecccc
Q 008735 138 ALLDPYLSRYSAIIVDEAHE 157 (555)
Q Consensus 138 ~~~~~~l~~~~~iIiDE~He 157 (555)
.+.....+++++|+||-+-.
T Consensus 75 ~l~~~~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 75 ALEKFRKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHHHHHHTTSSEEEEEE-SS
T ss_pred HHHHHhhcCCCEEEEecCCc
Confidence 33322235689999999863
No 157
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.02 E-value=8.1e-06 Score=70.48 Aligned_cols=103 Identities=26% Similarity=0.374 Sum_probs=51.8
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhcccc----CCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCC
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFC----RDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTS 130 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~----~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~ 130 (555)
.+++.++|.||+|+|||+++..++...... .....+.+..|...-.......+...++..... ..+
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----------~~~ 71 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----------RQT 71 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----------TS-
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----------cCC
Confidence 356789999999999999988888654211 012234444444443455566666666543222 111
Q ss_pred chh---hHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHHH
Q 008735 131 TST---RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 172 (555)
Q Consensus 131 ~~~---~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~ 172 (555)
... .+...+.. ....+|||||+|... ....+..++.+
T Consensus 72 ~~~l~~~~~~~l~~---~~~~~lviDe~~~l~--~~~~l~~l~~l 111 (131)
T PF13401_consen 72 SDELRSLLIDALDR---RRVVLLVIDEADHLF--SDEFLEFLRSL 111 (131)
T ss_dssp HHHHHHHHHHHHHH---CTEEEEEEETTHHHH--THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---cCCeEEEEeChHhcC--CHHHHHHHHHH
Confidence 111 11122221 112699999999753 35555555543
No 158
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.00 E-value=6.4e-05 Score=69.83 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHhcC--CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHH
Q 008735 43 IASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 43 ~~~~Q~~~i~~i~~~--~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
+++-|.+++..+..+ +.++|.||.|+||||++..+.... ...+..++++.|+..++....+.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~--~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL--EAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH--HHTT--EEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH--HhCCCeEEEECCcHHHHHHHHHh
Confidence 467899999998543 488899999999998776544222 12357899999999888776655
No 159
>PF13245 AAA_19: Part of AAA domain
Probab=97.99 E-value=2.4e-05 Score=60.25 Aligned_cols=55 Identities=27% Similarity=0.380 Sum_probs=41.0
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhcc--ccCCCcEEEEeCccHHHHHHHHHHH
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHAG--FCRDGKLIGVTQPRRVAAVTVAKRV 107 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~~--~~~~~~~i~~~~P~r~l~~~~~~~~ 107 (555)
++..+..++|.||.|||||+++...+.... ....+.+++++.|++.++..+.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 455467777899999999966655554443 1222678999999999999888877
No 160
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.91 E-value=0.0003 Score=74.94 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=89.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCC-c-EEEEecCccccccccCC
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF-R-KVILATNIAETSVTIPG 359 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~-~-~vlvaT~~~e~Gvdip~ 359 (555)
+.+||+|-.=.....-+...|.-. ++...-+.|...-.+|..++..|...+ + -.|++|-+.+-|||+-+
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~l---------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~ 847 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDTL---------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTC 847 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHhc---------CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccc
Confidence 567999977666555555555554 888999999999999999999998664 3 56999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHh
Q 008735 360 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 418 (555)
Q Consensus 360 v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 418 (555)
.++||- ||-.. -|..-.++.-|+-|+|-..+=.+|+|.++...+
T Consensus 848 An~VIi--------hD~dF-------NP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 848 ANTVII--------HDIDF-------NPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred cceEEE--------eecCC-------CCcccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 999886 66322 366666777788888877789999999887553
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.91 E-value=0.00021 Score=77.93 Aligned_cols=98 Identities=24% Similarity=0.218 Sum_probs=63.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCc-EEEEecCccccccccCCe
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR-KVILATNIAETSVTIPGI 360 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~-~vlvaT~~~e~Gvdip~v 360 (555)
+.|+||-+.+.+..+.+.+.|.+. ++....+.+.-...|=..+-+. |.. -|=||||.|++|-||.--
T Consensus 429 gqPvLvgT~sie~SE~ls~~L~~~---------~i~h~VLNAk~h~~EA~Iia~A---G~~gaVTiATNMAGRGTDIkLg 496 (822)
T COG0653 429 GQPVLVGTVSIEKSELLSKLLRKA---------GIPHNVLNAKNHAREAEIIAQA---GQPGAVTIATNMAGRGTDIKLG 496 (822)
T ss_pred CCCEEEcCcceecchhHHHHHHhc---------CCCceeeccccHHHHHHHHhhc---CCCCccccccccccCCcccccC
Confidence 788999999999999999999875 4443334443333333333333 443 478999999999998522
Q ss_pred E-----------EEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEE
Q 008735 361 K-----------YVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 409 (555)
Q Consensus 361 ~-----------~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~ 409 (555)
. +||-+... -|..-=.|-.||+||.| +|..-
T Consensus 497 ~~~~~V~~lGGL~VIgTERh------------------ESRRIDnQLRGRsGRQGDpG~S~ 539 (822)
T COG0653 497 GNPEFVMELGGLHVIGTERH------------------ESRRIDNQLRGRAGRQGDPGSSR 539 (822)
T ss_pred CCHHHHHHhCCcEEEecccc------------------hhhHHHHHhhcccccCCCcchhh
Confidence 2 33322221 22222359999999999 77643
No 162
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00026 Score=72.20 Aligned_cols=89 Identities=20% Similarity=0.312 Sum_probs=53.5
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhcccc--CCCcE--EEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCch
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFC--RDGKL--IGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 132 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~--~~~~~--i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 132 (555)
..+++++||||+||||.+..++...... ..+.. ++.+-+.|..+.++.+.+++..+..+ .+. ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~~~---------~~~ 242 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--KAI---------ESF 242 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--Eee---------CcH
Confidence 4688999999999998877666543221 12333 34445667777777777666555432 111 011
Q ss_pred hhHHHhhcCCCCCCCceeEeeccccc
Q 008735 133 TRIKEALLDPYLSRYSAIIVDEAHER 158 (555)
Q Consensus 133 ~~i~~~~~~~~l~~~~~iIiDE~He~ 158 (555)
..+...+.. +.++++|+||++..-
T Consensus 243 ~~l~~~L~~--~~~~DlVLIDTaGr~ 266 (388)
T PRK12723 243 KDLKEEITQ--SKDFDLVLVDTIGKS 266 (388)
T ss_pred HHHHHHHHH--hCCCCEEEEcCCCCC
Confidence 222332222 467999999999743
No 163
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.74 E-value=0.0042 Score=69.47 Aligned_cols=63 Identities=22% Similarity=0.187 Sum_probs=48.4
Q ss_pred CCCcHHHHHHHHHHHhc-CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHH
Q 008735 40 SLPIASVEKRLVEEVRK-NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVA 104 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~-~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~ 104 (555)
...+++-|.+++..+.. ++.++|+|+.|+||||++-.+.... ...+..++++.|+..++..+.
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~--~~~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAW--EAAGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHH--HhCCCeEEEEeCcHHHHHHHH
Confidence 35678999999999877 5799999999999998887655322 223567889999987765554
No 164
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.74 E-value=0.00013 Score=78.85 Aligned_cols=65 Identities=25% Similarity=0.306 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccc---cCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 45 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF---CRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 45 ~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~---~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
+.|++++..+..++.++|+|+.|+||||++..++..... ..++.+|.++.|+.-++..+.+.+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 679999999999999999999999999877666533211 11124799999998888777665544
No 165
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.73 E-value=0.0004 Score=77.03 Aligned_cols=178 Identities=19% Similarity=0.244 Sum_probs=106.2
Q ss_pred ceEEEeccCCCH-HHH---HhhhCCC-----CeEEeCCccccc---eEEEcCC------CCCChHHHHHHHHHHHHhcCC
Q 008735 220 LKLIIMSASLDA-RGF---SEYFGCA-----KAVHVQGRQFPV---EILYTLY------PEPDYLDATLITIFQVHLDEA 281 (555)
Q Consensus 220 ~~ii~~SAT~~~-~~~---~~~~~~~-----~~~~~~~~~~~v---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 281 (555)
..+|++|||+.+ ..| .+.+|-. ..+.++ .+++. ...|... ...++.+.....+..+.. .
T Consensus 457 ~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~-SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~-~- 533 (697)
T PRK11747 457 PGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALP-SPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE-K- 533 (697)
T ss_pred CEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcC-CCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh-c-
Confidence 457999999954 333 3444522 123332 23332 1222221 123455666666666666 3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCC----CCCcEEEEecCcccccccc
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAA----AGFRKVILATNIAETSVTI 357 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~----~g~~~vlvaT~~~e~Gvdi 357 (555)
+|.+|||++|.+..+.++..|.... +..+. .++.. .+..+++.|+ .|.-.||++|..+..|||+
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~--------~~~ll-~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~ 601 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDL--------RLMLL-VQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDL 601 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhc--------CCcEE-EeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccC
Confidence 5559999999999999999887531 22233 24543 3455664444 5677899999999999999
Q ss_pred CC--eEEEEeCCcccceeecCC----------CCcccc--ceeecCHHhHHHHhcccCCCC--CCEEEEcc
Q 008735 358 PG--IKYVIDPGFVKARLYDPV----------KGMESL--LVVPISKAQALQRSGRAGREG--PGKCFRLY 412 (555)
Q Consensus 358 p~--v~~VId~g~~~~~~yd~~----------~~~~~l--~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l~ 412 (555)
|+ +++||-.|+.=..--||. .|-..+ ...|.....+.|-+||.=|.. .|..+.+-
T Consensus 602 pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD 672 (697)
T PRK11747 602 PGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILD 672 (697)
T ss_pred CCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEc
Confidence 85 677776555422111111 111111 122455667899999999987 67766654
No 166
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.72 E-value=8.9e-05 Score=70.81 Aligned_cols=67 Identities=22% Similarity=0.356 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHhcCCe-EEEEcCCCCchhhHHHHHHHhc------cccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 43 IASVEKRLVEEVRKNDI-LIIVGETGSGKTTQLPQFLFHA------GFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 43 ~~~~Q~~~i~~i~~~~~-~ii~apTGsGKT~~l~~~i~~~------~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
+.+.|.+++..+.+... .+|.||.|+|||+++..++... .....+..++++.|+..++..+..++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 46789999999999987 9999999999997777666655 1244577899999999999999988776
No 167
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.67 E-value=0.00029 Score=78.26 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=52.2
Q ss_pred HhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHH
Q 008735 36 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVA 104 (555)
Q Consensus 36 ~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~ 104 (555)
.......+++-|++++..+..++.++|+|+.|+||||++..++.......+...++++.|+.-++..+.
T Consensus 317 ~~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 317 EKKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred HHhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHH
Confidence 344567889999999999999999999999999999888666543322111257888899988776443
No 168
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.67 E-value=0.00045 Score=60.28 Aligned_cols=48 Identities=23% Similarity=0.194 Sum_probs=31.3
Q ss_pred HHHHHHHHhc--CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCcc
Q 008735 47 EKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 96 (555)
Q Consensus 47 Q~~~i~~i~~--~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~ 96 (555)
..++...+.. ++.+++.||+|+|||+++..++.... ..+..++++...
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~ 56 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNAS 56 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehh
Confidence 3344555555 78999999999999988777765543 123345555443
No 169
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.64 E-value=0.0025 Score=73.03 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=40.4
Q ss_pred CCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCC
Q 008735 337 AAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPG 406 (555)
Q Consensus 337 f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G 406 (555)
.++...++||-+|.+=+|.|-|...... .| .|.---..+|-+-|+.|.-++
T Consensus 589 ~~~d~~kilIV~dmlLTGFDaP~L~TmY---------vD----------K~Lk~H~L~QAisRtNR~~~~ 639 (962)
T COG0610 589 LKDDPLDLLIVVDMLLTGFDAPCLNTLY---------VD----------KPLKYHNLIQAISRTNRVFPG 639 (962)
T ss_pred CcCCCCCEEEEEccccccCCccccceEE---------ec----------cccccchHHHHHHHhccCCCC
Confidence 5667899999999999999999887766 44 455556688989999987643
No 170
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.60 E-value=0.00051 Score=74.41 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccc--cCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 44 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 44 ~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~--~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
.+.|++++.....++.++|+|++|+||||++..++..... ......|.++.|+.-++..+.+.+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 3789999999999999999999999999887666543211 11235789999999888877776543
No 171
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.59 E-value=0.00042 Score=77.41 Aligned_cols=184 Identities=14% Similarity=0.118 Sum_probs=106.2
Q ss_pred eEEEeccCC-CHHHHHhhhCCCCeEE-eCCcccc-----------------ceEEEcCCCCCChHHHHHHHHHHHHhcCC
Q 008735 221 KLIIMSASL-DARGFSEYFGCAKAVH-VQGRQFP-----------------VEILYTLYPEPDYLDATLITIFQVHLDEA 281 (555)
Q Consensus 221 ~ii~~SAT~-~~~~~~~~~~~~~~~~-~~~~~~~-----------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (555)
.+|++|||+ +.+.+.+.+|...... ..+...+ +...|......++.......+..+....
T Consensus 443 svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~~- 521 (705)
T TIGR00604 443 SVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKII- 521 (705)
T ss_pred EEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhcC-
Confidence 579999999 6677887776422111 1111111 1111222222345566666666665554
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHh--hcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCC----CCcEEEEec--Ccccc
Q 008735 282 PGDILVFLTGQEEIESVERLVQERL--LQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA----GFRKVILAT--NIAET 353 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~--~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~----g~~~vlvaT--~~~e~ 353 (555)
+|.+|||.||....+++.+.+.+.. ..+.. ...++.=..++ .++..+++.|+. |.-.|++|+ ..+..
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~---~k~i~~E~~~~--~~~~~~l~~f~~~~~~~~gavL~av~gGk~sE 596 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEK---KKLIFVETKDA--QETSDALERYKQAVSEGRGAVLLSVAGGKVSE 596 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhc---CCCEEEeCCCc--chHHHHHHHHHHHHhcCCceEEEEecCCcccC
Confidence 6789999999999999988877531 00000 11122111121 466778877753 455699999 88999
Q ss_pred ccccCC--eEEEEeCCcccceeecCCC--------------CccccceeecCHHhHHHHhcccCCCC--CCEEEEc
Q 008735 354 SVTIPG--IKYVIDPGFVKARLYDPVK--------------GMESLLVVPISKAQALQRSGRAGREG--PGKCFRL 411 (555)
Q Consensus 354 Gvdip~--v~~VId~g~~~~~~yd~~~--------------~~~~l~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l 411 (555)
|||+++ .+.||-.|+.-....|+.. +..... .........|-+||+=|.. -|..+.+
T Consensus 597 GIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~a~~~v~QaiGR~IR~~~D~G~iill 671 (705)
T TIGR00604 597 GIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFY-EFDAMRAVNQAIGRVIRHKDDYGSIVLL 671 (705)
T ss_pred ccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHH-HHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 999996 5778878876532222111 110000 1233456789999999998 4544433
No 172
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00056 Score=69.24 Aligned_cols=89 Identities=16% Similarity=0.235 Sum_probs=51.6
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC--ccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCch
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 132 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~--P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 132 (555)
..|.+++++||||+||||++..+........+..++.++. +.|..+.++.+.+++..+..+.. ....
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~-----------~~~~ 203 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA-----------VKDG 203 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe-----------cCCc
Confidence 3578999999999999988877775543222223343332 34556666666666666533210 0011
Q ss_pred hhHHHhhcCCCCCCCceeEeeccc
Q 008735 133 TRIKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 133 ~~i~~~~~~~~l~~~~~iIiDE~H 156 (555)
..+...+. .+.+.++|+||++=
T Consensus 204 ~~l~~~l~--~l~~~DlVLIDTaG 225 (374)
T PRK14722 204 GDLQLALA--ELRNKHMVLIDTIG 225 (374)
T ss_pred ccHHHHHH--HhcCCCEEEEcCCC
Confidence 11111221 24567999999984
No 173
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.58 E-value=0.00018 Score=73.71 Aligned_cols=102 Identities=20% Similarity=0.342 Sum_probs=66.1
Q ss_pred cHHHHHHHHHHH------hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHH--HHHHHHHhCCc
Q 008735 43 IASVEKRLVEEV------RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTV--AKRVAEESGVE 114 (555)
Q Consensus 43 ~~~~Q~~~i~~i------~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~--~~~~~~~~~~~ 114 (555)
+.+-|+++++.+ .++.++.|.||-|+|||+++-.+..... ..+..++++.|+..+|..+ ..-+...++..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~--~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~ 79 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR--SRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIP 79 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc--cccceEEEecchHHHHHhccCCcchHHhcCcc
Confidence 456688888887 7889999999999999998877765432 2356799999999988777 33344444433
Q ss_pred cCCEEEEEEecCCCCCchhhHHHhhcCCCCCCCceeEeecc
Q 008735 115 LGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA 155 (555)
Q Consensus 115 ~~~~vg~~~~~~~~~~~~~~i~~~~~~~~l~~~~~iIiDE~ 155 (555)
++..- .......... .....+.+.++|||||+
T Consensus 80 ~~~~~----~~~~~~~~~~-----~~~~~l~~~~~lIiDEi 111 (364)
T PF05970_consen 80 INNNE----KSQCKISKNS-----RLRERLRKADVLIIDEI 111 (364)
T ss_pred ccccc----cccccccccc-----hhhhhhhhheeeecccc
Confidence 32210 0000000111 11234677899999998
No 174
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.0014 Score=66.17 Aligned_cols=86 Identities=23% Similarity=0.338 Sum_probs=47.0
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEe--CccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhH
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 135 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~--~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 135 (555)
+.++++||||+||||.+..+..... ..+.++.++ -|.|..+..+....++..+..+ .+. .....+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv--~v~---------~d~~~L 308 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV--IAV---------RDEAAM 308 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE--Eec---------CCHHHH
Confidence 6889999999999988877765432 223344333 3566555555555544444221 010 111222
Q ss_pred HHhhcC-CCCCCCceeEeeccc
Q 008735 136 KEALLD-PYLSRYSAIIVDEAH 156 (555)
Q Consensus 136 ~~~~~~-~~l~~~~~iIiDE~H 156 (555)
...+.. ..-.++++|+||-+=
T Consensus 309 ~~aL~~lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 309 TRALTYFKEEARVDYILIDTAG 330 (436)
T ss_pred HHHHHHHHhccCCCEEEEeCcc
Confidence 222211 111358999999984
No 175
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.50 E-value=0.001 Score=66.94 Aligned_cols=88 Identities=32% Similarity=0.367 Sum_probs=57.5
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcE--EEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKL--IGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 133 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~--i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 133 (555)
+++++.++||||.||||.+.-++.......+..+ ++-+-..|..|..+.+..++.++..+.. . .+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v--v--------~~~~e 271 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV--V--------YSPKE 271 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE--e--------cCHHH
Confidence 3789999999999999777666655553333333 4444567888888888888888865321 1 11111
Q ss_pred hHHHhhcCCCCCCCceeEeeccc
Q 008735 134 RIKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 134 ~i~~~~~~~~l~~~~~iIiDE~H 156 (555)
+...+ ..+.++++|.||=+-
T Consensus 272 -l~~ai--~~l~~~d~ILVDTaG 291 (407)
T COG1419 272 -LAEAI--EALRDCDVILVDTAG 291 (407)
T ss_pred -HHHHH--HHhhcCCEEEEeCCC
Confidence 11111 235678999999984
No 176
>PRK06526 transposase; Provisional
Probab=97.47 E-value=0.00026 Score=68.38 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=27.6
Q ss_pred HHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEe
Q 008735 52 EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT 93 (555)
Q Consensus 52 ~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~ 93 (555)
+.+..+++++++||+|+|||+++..+..... ..+..+++.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~--~~g~~v~f~ 132 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRAC--QAGHRVLFA 132 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHH--HCCCchhhh
Confidence 4456788999999999999987765554432 124455554
No 177
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.47 E-value=0.034 Score=63.44 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=47.7
Q ss_pred cCCCcHHHHHHHHHHHhcC-CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHH
Q 008735 39 KSLPIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVA 104 (555)
Q Consensus 39 ~~l~~~~~Q~~~i~~i~~~-~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~ 104 (555)
..+.+++-|.+++..+..+ +.++|+|+.|+||||++..+... +...+..|+.+.|+-.++..+.
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~--~e~~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREA--WEAAGYEVRGAALSGIAAENLE 407 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEecCcHHHHHHHh
Confidence 4567899999999998874 57899999999999886543321 1223667888999987765543
No 178
>PRK14974 cell division protein FtsY; Provisional
Probab=97.46 E-value=0.0014 Score=65.70 Aligned_cols=94 Identities=18% Similarity=0.277 Sum_probs=50.0
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC--ccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 134 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~--P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 134 (555)
...++++|++|+||||.+..++... ...+..++++. +.|..+..+.+.++...+..+.. + .........
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l--~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-----~~g~dp~~v 210 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL--KKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-----KYGADPAAV 210 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-----cCCCCHHHH
Confidence 3578999999999998776665432 22244554444 34566655555556655543211 0 001111111
Q ss_pred HHHhhcCCCCCCCceeEeecccccc
Q 008735 135 IKEALLDPYLSRYSAIIVDEAHERT 159 (555)
Q Consensus 135 i~~~~~~~~l~~~~~iIiDE~He~~ 159 (555)
+...+......++++|+||.++...
T Consensus 211 ~~~ai~~~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 211 AYDAIEHAKARGIDVVLIDTAGRMH 235 (336)
T ss_pred HHHHHHHHHhCCCCEEEEECCCccC
Confidence 1111111123468899999997443
No 179
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.46 E-value=0.00023 Score=70.81 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=28.1
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHH---hccccCCCcEEEEeCccHHHHHHHHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLF---HAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 111 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~---~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~ 111 (555)
..+..++.-..|+|||..+..++. ..........++++.|...+ .+....+.+..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~-~~W~~E~~~~~ 81 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLL-SQWKEEIEKWF 81 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTH-HHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchh-hhhhhhhcccc
Confidence 456788888999999955544443 22111122357888888444 44555555555
No 180
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.0017 Score=67.52 Aligned_cols=87 Identities=26% Similarity=0.353 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEE--eCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGV--TQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 134 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~--~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 134 (555)
++.++++||||+||||.+..++.......++.++.+ .-|.|..+..+...++...+..+. +. . ....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~--------~-~~~~ 289 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VV--------Y-DPKE 289 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--cc--------C-CHHh
Confidence 678999999999999887766654431122333333 335566666666555655543211 10 1 1112
Q ss_pred HHHhhcCCCCCCCceeEeeccc
Q 008735 135 IKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 135 i~~~~~~~~l~~~~~iIiDE~H 156 (555)
+...+. .+.++++||||.+-
T Consensus 290 l~~~l~--~~~~~DlVlIDt~G 309 (424)
T PRK05703 290 LAKALE--QLRDCDVILIDTAG 309 (424)
T ss_pred HHHHHH--HhCCCCEEEEeCCC
Confidence 222222 13468999999984
No 181
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.44 E-value=0.001 Score=65.12 Aligned_cols=56 Identities=27% Similarity=0.398 Sum_probs=34.0
Q ss_pred CCCCCCCCCCChhHHHHHHHhhcCCCcHHHHHHHHHH----HhcC-CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 17 KLHSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEE----VRKN-DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Q~~~i~~----i~~~-~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+++..||...+.+.. +++ .+.+++++.. +..+ ..++++||+|+||||++..+....
T Consensus 7 ~l~~~pF~~~~~~~~--------~~~-~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 7 GFTTKPFQLLPDPDF--------FYP-SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCCCCCCCCCCCHHH--------hCC-CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 466778876554321 111 2222333333 3343 478999999999999988776554
No 182
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.44 E-value=0.00059 Score=58.96 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHH
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l 99 (555)
+..+++.||+|||||+++..++...... +..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEcc
Confidence 5789999999999999988777665432 1245666555443
No 183
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.42 E-value=2.1e-05 Score=74.82 Aligned_cols=27 Identities=37% Similarity=0.431 Sum_probs=23.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+.+|+.+.|.||+||||||++-.+.-.
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 568999999999999999999777643
No 184
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.42 E-value=0.0023 Score=71.21 Aligned_cols=181 Identities=20% Similarity=0.240 Sum_probs=106.8
Q ss_pred ceEEEeccCC-CHHHHHhhhCC---CCeE--EeCCccccceE---EEcCC--CC---CChHHHHHHHHHHHHhcCCCCcE
Q 008735 220 LKLIIMSASL-DARGFSEYFGC---AKAV--HVQGRQFPVEI---LYTLY--PE---PDYLDATLITIFQVHLDEAPGDI 285 (555)
Q Consensus 220 ~~ii~~SAT~-~~~~~~~~~~~---~~~~--~~~~~~~~v~~---~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~i 285 (555)
..+|++|||+ +.+.|..+++. .... .....+++... .+... +. +.........+..+.... +|++
T Consensus 404 ~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 482 (654)
T COG1199 404 ASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKAS-PGGV 482 (654)
T ss_pred CcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhc-CCCE
Confidence 4589999999 44455544432 1111 22222222111 12111 11 145556666666666554 6689
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCc-EEEEecCccccccccCCe--EE
Q 008735 286 LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR-KVILATNIAETSVTIPGI--KY 362 (555)
Q Consensus 286 LVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~-~vlvaT~~~e~Gvdip~v--~~ 362 (555)
|||++|.+..+.+++.+.+.. .......+|..+.. ..++.|+++.- -++|+|..+..|||+|+- +.
T Consensus 483 lvlF~Sy~~l~~~~~~~~~~~--------~~~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~ 551 (654)
T COG1199 483 LVLFPSYEYLKRVAERLKDER--------STLPVLTQGEDERE---ELLEKFKASGEGLILVGGGSFWEGVDFPGDALRL 551 (654)
T ss_pred EEEeccHHHHHHHHHHHhhcC--------ccceeeecCCCcHH---HHHHHHHHhcCCeEEEeeccccCcccCCCCCeeE
Confidence 999999999999999987641 11234445555544 55555554443 899999999999999954 45
Q ss_pred EEeCCcccce----------eecCCCCcc--ccceeecCHHhHHHHhcccCCCC--CCEEEEcc
Q 008735 363 VIDPGFVKAR----------LYDPVKGME--SLLVVPISKAQALQRSGRAGREG--PGKCFRLY 412 (555)
Q Consensus 363 VId~g~~~~~----------~yd~~~~~~--~l~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l~ 412 (555)
||-.|+.=.. .|....|.. .....|.......|-+||+=|.. .|.++.+-
T Consensus 552 vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 552 VVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 5533432221 122212111 11234677888999999999977 67777664
No 185
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.42 E-value=0.0004 Score=68.59 Aligned_cols=70 Identities=13% Similarity=0.064 Sum_probs=45.8
Q ss_pred cCCCcHHHHHH----HHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhccccC--CCcEEEEeCccHHHHHHHHHHHH
Q 008735 39 KSLPIASVEKR----LVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCR--DGKLIGVTQPRRVAAVTVAKRVA 108 (555)
Q Consensus 39 ~~l~~~~~Q~~----~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~~~--~~~~i~~~~P~r~l~~~~~~~~~ 108 (555)
..+++++.|.+ +.+.+.+|+++++.+|||+||| +++|.+.+...... ++.+++++.++.....+....+.
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 34566889998 5566778999999999999999 44444322221111 12368888888777666554443
No 186
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.42 E-value=0.0004 Score=68.59 Aligned_cols=70 Identities=13% Similarity=0.064 Sum_probs=45.8
Q ss_pred cCCCcHHHHHH----HHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhccccC--CCcEEEEeCccHHHHHHHHHHHH
Q 008735 39 KSLPIASVEKR----LVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCR--DGKLIGVTQPRRVAAVTVAKRVA 108 (555)
Q Consensus 39 ~~l~~~~~Q~~----~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~~~--~~~~i~~~~P~r~l~~~~~~~~~ 108 (555)
..+++++.|.+ +.+.+.+|+++++.+|||+||| +++|.+.+...... ++.+++++.++.....+....+.
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 34566889998 5566778999999999999999 44444322221111 12368888888777666554443
No 187
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.37 E-value=0.012 Score=72.34 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=50.1
Q ss_pred CCCcHHHHHHHHHHHhcC--CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHH
Q 008735 40 SLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~~--~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
.+++.+-|.+++..+... +..+|+|+.|+||||++..+.... ...|..|..+.|+..++....+.
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~--~~~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLA--SEQGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHH--HhcCCeEEEEeCCHHHHHHHHHH
Confidence 356788899999998764 799999999999998876665332 23467899999998877666543
No 188
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.36 E-value=0.035 Score=63.84 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=48.9
Q ss_pred cCCCcHHHHHHHHHHHh-cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHH
Q 008735 39 KSLPIASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVA 104 (555)
Q Consensus 39 ~~l~~~~~Q~~~i~~i~-~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~ 104 (555)
....+++-|.+++..+. .++.++|+|+.|+||||++..+... +...+..|+.+.|+-.++..+.
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~--~e~~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREA--WEAAGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEcCcHHHHHHHH
Confidence 34678999999999874 5789999999999999888765432 1223667888999987765554
No 189
>PRK08181 transposase; Validated
Probab=97.26 E-value=0.0034 Score=60.99 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=28.0
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
.+..++++++.||+|+|||.++..+..... ..+..++++.
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f~~ 141 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLFTR 141 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHH--HcCCceeeee
Confidence 456789999999999999977765554332 1245566654
No 190
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.24 E-value=0.00074 Score=68.92 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=53.3
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 137 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~ 137 (555)
+.++|.|..|||||.++..++........+..++++.+...+...+.+.+...... ... ............
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---~~~------~~~~~~~~~~i~ 72 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP---KLK------KSDFRKPTSFIN 72 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc---chh------hhhhhhhHHHHh
Confidence 46899999999999776666655422334556777777877777666665543300 000 001111111111
Q ss_pred -h-hcCCCCCCCceeEeecccc
Q 008735 138 -A-LLDPYLSRYSAIIVDEAHE 157 (555)
Q Consensus 138 -~-~~~~~l~~~~~iIiDE~He 157 (555)
. ........+++|||||||.
T Consensus 73 ~~~~~~~~~~~~DviivDEAqr 94 (352)
T PF09848_consen 73 NYSESDKEKNKYDVIIVDEAQR 94 (352)
T ss_pred hcccccccCCcCCEEEEehhHh
Confidence 1 1234467899999999994
No 191
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.23 E-value=0.00022 Score=64.44 Aligned_cols=122 Identities=23% Similarity=0.286 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecC--ccccccccC
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN--IAETSVTIP 358 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~--~~e~Gvdip 358 (555)
.+|.+|||+||.+..+.+.+.+.+.... .++.++.- ...++..+++.|+++.-.|++|+. .+..|||+|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-----KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-----ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 3688999999999999998887654210 02223322 245678888999999999999998 999999999
Q ss_pred C--eEEEEeCCcccceeecCC-----------CCc-cccceeecCHHhHHHHhcccCCCCC--CEEEEc
Q 008735 359 G--IKYVIDPGFVKARLYDPV-----------KGM-ESLLVVPISKAQALQRSGRAGREGP--GKCFRL 411 (555)
Q Consensus 359 ~--v~~VId~g~~~~~~yd~~-----------~~~-~~l~~~p~s~~~~~Qr~GRaGR~~~--G~~~~l 411 (555)
+ ++.||-.|+.-...-|+. .+. ......|.......|-+||+=|... |..+.+
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ll 147 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILL 147 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEE
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEE
Confidence 5 777887676543322221 000 0111234556678899999999884 444433
No 192
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.22 E-value=0.005 Score=58.94 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=50.2
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 137 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~ 137 (555)
..+++.|++|+|||+++..++..... .+..++++. ...+ ...+...+. ....+. ..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it-~~~l----~~~l~~~~~-------------~~~~~~-~~--- 155 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIIT-VADI----MSAMKDTFS-------------NSETSE-EQ--- 155 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEE-HHHH----HHHHHHHHh-------------hccccH-HH---
Confidence 57999999999999777666554322 245666663 2222 222211110 000011 11
Q ss_pred hhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhh
Q 008735 138 ALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 176 (555)
Q Consensus 138 ~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~ 176 (555)
++. .+.+++++||||++... .++.-...+-.++..|
T Consensus 156 ~l~--~l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~R 191 (244)
T PRK07952 156 LLN--DLSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRR 191 (244)
T ss_pred HHH--HhccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHH
Confidence 111 14579999999998654 4444445566666555
No 193
>PF13173 AAA_14: AAA domain
Probab=97.21 E-value=0.0023 Score=54.95 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=23.0
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhcc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAG 82 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~ 82 (555)
+++.++|.||.|+||||++-+++....
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999988876553
No 194
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.20 E-value=0.00049 Score=64.27 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=23.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|+||+||||||++-.+-...
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5689999999999999999997776443
No 195
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.18 E-value=0.0058 Score=61.07 Aligned_cols=93 Identities=22% Similarity=0.265 Sum_probs=50.5
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC--ccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 133 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~--P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 133 (555)
.++.++++||+|+||||++..++..... .+.+|.++. +.|..+.++...++...+. ++....... ....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~--~g~~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~~~~~~-dpa~ 183 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA--QGKKVLLAAGDTFRAAAIEQLQVWGERVGV------PVIAQKEGA-DPAS 183 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCeEEEEecCccchhhHHHHHHHHHHcCc------eEEEeCCCC-CHHH
Confidence 3578899999999999887666654332 234444433 4465555555555554432 222221111 1111
Q ss_pred hHHHhhcCCCCCCCceeEeecccc
Q 008735 134 RIKEALLDPYLSRYSAIIVDEAHE 157 (555)
Q Consensus 134 ~i~~~~~~~~l~~~~~iIiDE~He 157 (555)
.....+......++++||||=+-.
T Consensus 184 ~v~~~l~~~~~~~~D~ViIDTaGr 207 (318)
T PRK10416 184 VAFDAIQAAKARGIDVLIIDTAGR 207 (318)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCC
Confidence 111222222346799999999853
No 196
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.002 Score=64.77 Aligned_cols=89 Identities=27% Similarity=0.405 Sum_probs=49.3
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEE--eCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCch
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGV--TQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 132 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~--~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 132 (555)
..++.++++||||+||||++..+...... .+.++.+ +-|.|..+..+.+..++..+..+ .+. ...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~--~g~~V~lItaDtyR~gAveQLk~yae~lgvpv--~~~---------~dp 270 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLK--QNRTVGFITTDTFRSGAVEQFQGYADKLDVEL--IVA---------TSP 270 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCccCccHHHHHHHHhhcCCCCE--Eec---------CCH
Confidence 35789999999999999887776654322 2333433 33566665555554444443211 010 112
Q ss_pred hhHHHhhcC-CCCCCCceeEeeccc
Q 008735 133 TRIKEALLD-PYLSRYSAIIVDEAH 156 (555)
Q Consensus 133 ~~i~~~~~~-~~l~~~~~iIiDE~H 156 (555)
..+...+.. ...+++++|+||=+-
T Consensus 271 ~dL~~al~~l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 271 AELEEAVQYMTYVNCVDHILIDTVG 295 (407)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCC
Confidence 222222221 123568999999984
No 197
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.18 E-value=0.00051 Score=63.50 Aligned_cols=58 Identities=22% Similarity=0.220 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHH
Q 008735 41 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 98 (555)
Q Consensus 41 l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~ 98 (555)
-|.+..|+.+++++.+.+.+++.||.|||||+++....++......-.+++++.|...
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVE 60 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence 4778899999999999999999999999999877777666544444557888877653
No 198
>PRK04296 thymidine kinase; Provisional
Probab=97.17 E-value=0.0013 Score=60.67 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 95 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P 95 (555)
|...+++||.|+||||.+..++..... .+.+++++.|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~--~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE--RGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH--cCCeEEEEec
Confidence 567899999999999888777765532 2556777755
No 199
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0032 Score=66.04 Aligned_cols=90 Identities=19% Similarity=0.328 Sum_probs=47.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEe--CccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST 131 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~--~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~ 131 (555)
+..|+.++++||||+||||++..+.........+..+.++ -+.+..+.++........+ ..+ .. ...
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLg----v~v----~~---a~d 415 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLG----IAV----HE---ADS 415 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccC----cee----Ee---cCc
Confidence 3467899999999999998886666543222222334333 2445544444333322222 111 10 011
Q ss_pred hhhHHHhhcCCCCCCCceeEeeccc
Q 008735 132 STRIKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 132 ~~~i~~~~~~~~l~~~~~iIiDE~H 156 (555)
...+...+. .+.++++||||.+-
T Consensus 416 ~~~L~~aL~--~l~~~DLVLIDTaG 438 (559)
T PRK12727 416 AESLLDLLE--RLRDYKLVLIDTAG 438 (559)
T ss_pred HHHHHHHHH--HhccCCEEEecCCC
Confidence 122222332 24568999999985
No 200
>PRK10536 hypothetical protein; Provisional
Probab=97.15 E-value=0.00095 Score=63.54 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=47.6
Q ss_pred hhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccH
Q 008735 37 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 97 (555)
Q Consensus 37 ~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r 97 (555)
....-|.+..|...+.++.++..++++||+|||||+++..+.........-.+++++.|.-
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v 114 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVL 114 (262)
T ss_pred CccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCC
Confidence 3566788899999999999999999999999999988777666443233345677777764
No 201
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0047 Score=63.65 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=51.2
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCC--CcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRD--GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 133 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~--~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 133 (555)
.|+.+.++||||+||||++..+........+ ...++..-..|..+.++...+++.++..+. +. ....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v---------~~~~ 258 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SI---------KDIA 258 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cC---------CCHH
Confidence 4678999999999999988766653221111 223444555567666666666666653321 00 1111
Q ss_pred hHHHhhcCCCCCCCceeEeecc
Q 008735 134 RIKEALLDPYLSRYSAIIVDEA 155 (555)
Q Consensus 134 ~i~~~~~~~~l~~~~~iIiDE~ 155 (555)
.....+. .+.+.++++||.+
T Consensus 259 dl~~al~--~l~~~d~VLIDTa 278 (420)
T PRK14721 259 DLQLMLH--ELRGKHMVLIDTV 278 (420)
T ss_pred HHHHHHH--HhcCCCEEEecCC
Confidence 1111222 2667899999996
No 202
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.14 E-value=0.0033 Score=69.83 Aligned_cols=116 Identities=22% Similarity=0.299 Sum_probs=96.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCc--EEEEecCcccccccc
Q 008735 280 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR--KVILATNIAETSVTI 357 (555)
Q Consensus 280 ~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~--~vlvaT~~~e~Gvdi 357 (555)
..+.++|||..=.+...-+..+|..+ ++.-+-+.|....++|...++.|..+.+ ..|++|-.-..|||+
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyH---------gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNL 1344 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYH---------GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINL 1344 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhc---------ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccc
Confidence 44778999998888788788888776 8888889999999999999999987754 679999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHhc
Q 008735 358 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK 419 (555)
Q Consensus 358 p~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 419 (555)
-+.+.||- ||...+ |.--+.+.-|.-|.|+...=..|+|+++...+.
T Consensus 1345 tgADTVvF--------YDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIEe 1391 (1958)
T KOG0391|consen 1345 TGADTVVF--------YDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIEE 1391 (1958)
T ss_pred ccCceEEE--------ecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHHH
Confidence 99999997 886654 344456677888888888889999998776653
No 203
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.005 Score=67.70 Aligned_cols=87 Identities=20% Similarity=0.254 Sum_probs=51.9
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC--ccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 134 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~--P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 134 (555)
++.+.++||||+||||.+..+........++++|.++. +.|..+..+.+.+++..+..+. +. .....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~---------~~~~~ 253 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AV---------KDAAD 253 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--cc---------CCHHH
Confidence 57889999999999988877765442232333444433 4566666666666666654321 11 01122
Q ss_pred HHHhhcCCCCCCCceeEeeccc
Q 008735 135 IKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 135 i~~~~~~~~l~~~~~iIiDE~H 156 (555)
+...+. .+.++++|+||=+=
T Consensus 254 l~~al~--~~~~~D~VLIDTAG 273 (767)
T PRK14723 254 LRFALA--ALGDKHLVLIDTVG 273 (767)
T ss_pred HHHHHH--HhcCCCEEEEeCCC
Confidence 333332 24577999999984
No 204
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.06 E-value=0.0035 Score=57.00 Aligned_cols=78 Identities=21% Similarity=0.175 Sum_probs=50.1
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCch
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 132 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 132 (555)
.+..|+.+.+.||+||||||++-.+.-..... .+.+.+-- ..++|..+.. ..+..
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g----------------------~~i~~~~q~~-~LSgG 75 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN--GDNDEWDG----------------------ITPVYKPQYI-DLSGG 75 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CcEEEECC----------------------EEEEEEcccC-CCCHH
Confidence 45789999999999999999997765332211 22333211 1245544322 15556
Q ss_pred hhHHHhhcCCCCCCCceeEeecc
Q 008735 133 TRIKEALLDPYLSRYSAIIVDEA 155 (555)
Q Consensus 133 ~~i~~~~~~~~l~~~~~iIiDE~ 155 (555)
.+.+..++.....+.+++++||-
T Consensus 76 q~qrv~laral~~~p~lllLDEP 98 (177)
T cd03222 76 ELQRVAIAAALLRNATFYLFDEP 98 (177)
T ss_pred HHHHHHHHHHHhcCCCEEEEECC
Confidence 66665566666778899999995
No 205
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.0033 Score=59.10 Aligned_cols=100 Identities=24% Similarity=0.286 Sum_probs=56.6
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhccccC------------CC-cEEEEeCccH-----HHHHHHH----------
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR------------DG-KLIGVTQPRR-----VAAVTVA---------- 104 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~------------~~-~~i~~~~P~r-----~l~~~~~---------- 104 (555)
.+..|+.+.|.||+||||||++..+.-...... .+ ...++.|-.+ .....+.
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~ 104 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSK 104 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccch
Confidence 356899999999999999999988773221111 11 1223332211 1111000
Q ss_pred ----HHHHHHhCCccCCEEEEEEecCCCCCchhhHHHhhcCCCCCCCceeEeec
Q 008735 105 ----KRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE 154 (555)
Q Consensus 105 ----~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~~~~~~~l~~~~~iIiDE 154 (555)
.+..+.+ ..+| .-|+...+....+...+.+..++.....+.+++.+||
T Consensus 105 ~e~~~~a~~~L-~~Vg-L~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 105 AEARERAKELL-ELVG-LAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred HhHHHHHHHHH-HHcC-CcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0111111 1111 2244555666677777777777777788899999999
No 206
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.04 E-value=0.0046 Score=64.80 Aligned_cols=87 Identities=16% Similarity=0.212 Sum_probs=51.8
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEE--EeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIG--VTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 133 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~--~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 133 (555)
.|+++.++||||+||||.+..+........++.+|. -.-+.|..+.++...+++..+..+. .. ..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~--~~---------~~-- 321 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH--AV---------KD-- 321 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee--cc---------CC--
Confidence 467899999999999988877775443222222333 3345577777777777776663211 00 00
Q ss_pred hHHHhhcCCCCCCCceeEeecc
Q 008735 134 RIKEALLDPYLSRYSAIIVDEA 155 (555)
Q Consensus 134 ~i~~~~~~~~l~~~~~iIiDE~ 155 (555)
.......-..+.+.++++||.+
T Consensus 322 ~~Dl~~aL~~L~d~d~VLIDTa 343 (484)
T PRK06995 322 AADLRLALSELRNKHIVLIDTI 343 (484)
T ss_pred chhHHHHHHhccCCCeEEeCCC
Confidence 0111111124567799999996
No 207
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.01 E-value=0.0016 Score=57.24 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=48.8
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 133 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 133 (555)
+..|+.+.|.||+||||||++..+.-..... ...+.+-. . ..++|..+ .+...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~~-~--------------------~~i~~~~~----lS~G~ 75 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPD--EGIVTWGS-T--------------------VKIGYFEQ----LSGGE 75 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECC-e--------------------EEEEEEcc----CCHHH
Confidence 4578999999999999999887765433211 22333211 0 24555544 55555
Q ss_pred hHHHhhcCCCCCCCceeEeecc
Q 008735 134 RIKEALLDPYLSRYSAIIVDEA 155 (555)
Q Consensus 134 ~i~~~~~~~~l~~~~~iIiDE~ 155 (555)
+.+..+......+.+++++||-
T Consensus 76 ~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 76 KMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred HHHHHHHHHHhcCCCEEEEeCC
Confidence 5555556666778899999995
No 208
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.96 E-value=0.0033 Score=56.49 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=51.8
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC-ccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCch
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ-PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 132 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~-P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 132 (555)
+..|+.+.+.||+||||||++..+.-..... .+.+.+-- +.... ... .. ....++|..+ .+..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~v~~~g~~~~~~--~~~----~~----~~~~i~~~~q----LS~G 86 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPD--SGEILVDGKEVSFA--SPR----DA----RRAGIAMVYQ----LSVG 86 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEECCcC--CHH----HH----HhcCeEEEEe----cCHH
Confidence 5689999999999999999998776443221 22333211 10000 000 00 1124666655 5556
Q ss_pred hhHHHhhcCCCCCCCceeEeecc
Q 008735 133 TRIKEALLDPYLSRYSAIIVDEA 155 (555)
Q Consensus 133 ~~i~~~~~~~~l~~~~~iIiDE~ 155 (555)
.+.+..++.....+.+++++||-
T Consensus 87 ~~qrl~laral~~~p~illlDEP 109 (163)
T cd03216 87 ERQMVEIARALARNARLLILDEP 109 (163)
T ss_pred HHHHHHHHHHHhcCCCEEEEECC
Confidence 66665666666778899999995
No 209
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.0064 Score=62.20 Aligned_cols=85 Identities=29% Similarity=0.404 Sum_probs=50.3
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEE--EEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLI--GVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 134 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i--~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 134 (555)
+..++++||||+||||++..++...... .+.++ +-.-+.|..+.++.++.++..+..+ . .. .....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~---~--~~------~~~~~ 290 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF---Y--PV------KDIKK 290 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccchhhhHHHHHHHHHHhcCCCe---e--eh------HHHHH
Confidence 4578899999999999988887644222 23333 3334667777777777666555321 0 00 00112
Q ss_pred HHHhhcCCCCCCCceeEeeccc
Q 008735 135 IKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 135 i~~~~~~~~l~~~~~iIiDE~H 156 (555)
+...+. -.++++|+||=+-
T Consensus 291 l~~~l~---~~~~D~VLIDTaG 309 (432)
T PRK12724 291 FKETLA---RDGSELILIDTAG 309 (432)
T ss_pred HHHHHH---hCCCCEEEEeCCC
Confidence 222222 2578999999753
No 210
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.94 E-value=0.0061 Score=58.85 Aligned_cols=89 Identities=19% Similarity=0.070 Sum_probs=54.8
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHH
Q 008735 31 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 110 (555)
Q Consensus 31 ~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~ 110 (555)
+.+.......+.|++.|--..-.+..|+ ++...||=|||..+.+........ |..|-++....-|+..-++.+...
T Consensus 66 ~rea~~r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 66 VREAARRTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--GKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp HHHHHHHHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--SS-EEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--cCCcEEEeccHHHhhccHHHHHHH
Confidence 3344455677888888888887787777 788899999996665555544443 455666666777777666665554
Q ss_pred hCCccCCEEEEEEe
Q 008735 111 SGVELGQRVGYSIR 124 (555)
Q Consensus 111 ~~~~~~~~vg~~~~ 124 (555)
+. .+|..+|+...
T Consensus 142 y~-~LGlsv~~~~~ 154 (266)
T PF07517_consen 142 YE-FLGLSVGIITS 154 (266)
T ss_dssp HH-HTT--EEEEET
T ss_pred HH-HhhhccccCcc
Confidence 43 45666775544
No 211
>PF05729 NACHT: NACHT domain
Probab=96.94 E-value=0.0052 Score=55.01 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhcc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAG 82 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~ 82 (555)
+.++|.|+.|+|||+++..++....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 4689999999999988877775443
No 212
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.91 E-value=0.0034 Score=61.84 Aligned_cols=86 Identities=29% Similarity=0.362 Sum_probs=48.3
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcE--EEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKL--IGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 134 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~--i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 134 (555)
+++++++||||+||||++..++.......++.. ++-+-|.+..+.+....++...+..+. + ......
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~---------~~~~~~ 262 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--V---------ARDPKE 262 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--c---------cCCHHH
Confidence 468999999999999888776654432212223 333345566665555555555443211 0 011122
Q ss_pred HHHhhcCCCCCCCceeEeecc
Q 008735 135 IKEALLDPYLSRYSAIIVDEA 155 (555)
Q Consensus 135 i~~~~~~~~l~~~~~iIiDE~ 155 (555)
+...+. .+.++++|+||.+
T Consensus 263 l~~~l~--~~~~~d~vliDt~ 281 (282)
T TIGR03499 263 LRKALD--RLRDKDLILIDTA 281 (282)
T ss_pred HHHHHH--HccCCCEEEEeCC
Confidence 223322 2356899999975
No 213
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.90 E-value=0.0022 Score=57.82 Aligned_cols=88 Identities=20% Similarity=0.264 Sum_probs=49.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCC------CcEEEEeCccHHHH-HHHHHHHHHHhCCccCCEEEEEEecC
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD------GKLIGVTQPRRVAA-VTVAKRVAEESGVELGQRVGYSIRFD 126 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~------~~~i~~~~P~r~l~-~~~~~~~~~~~~~~~~~~vg~~~~~~ 126 (555)
+..|+.+.|+||+||||||++..+.-......+ ...+.++.+...+. ..+.+.+. . . ..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~----~--~--------~~ 89 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLI----Y--P--------WD 89 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhh----c--c--------CC
Confidence 468999999999999999998777644322211 12333433322110 01111110 0 0 12
Q ss_pred CCCCchhhHHHhhcCCCCCCCceeEeecc
Q 008735 127 DRTSTSTRIKEALLDPYLSRYSAIIVDEA 155 (555)
Q Consensus 127 ~~~~~~~~i~~~~~~~~l~~~~~iIiDE~ 155 (555)
...+...+.+..++...+.+.+++++||-
T Consensus 90 ~~LS~G~~~rv~laral~~~p~~lllDEP 118 (166)
T cd03223 90 DVLSGGEQQRLAFARLLLHKPKFVFLDEA 118 (166)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 33455555555555556778899999994
No 214
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.0013 Score=62.60 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=21.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+++.|||||||||++..+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~l~ 51 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKLLN 51 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHc
Confidence 4578999999999999999986654
No 215
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.89 E-value=0.0056 Score=61.19 Aligned_cols=29 Identities=38% Similarity=0.463 Sum_probs=23.7
Q ss_pred HHHhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 52 EEVRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 52 ~~i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
-.+..+.+++|+|||||||||++..++..
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~ 167 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDE 167 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 34668899999999999999998666543
No 216
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.89 E-value=0.0026 Score=57.80 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|.||+||||||++-.++
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4678999999999999999997664
No 217
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.0022 Score=63.84 Aligned_cols=27 Identities=22% Similarity=0.538 Sum_probs=23.8
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
.+.+|+.+++.||+||||||++..++-
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999999988873
No 218
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.88 E-value=0.0018 Score=55.57 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=18.5
Q ss_pred EEEEcCCCCchhhHHHHHHHhc
Q 008735 60 LIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 60 ~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+++.||+|+|||+++..++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5899999999998887776654
No 219
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.00058 Score=63.62 Aligned_cols=121 Identities=22% Similarity=0.277 Sum_probs=63.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCC-----C---------------cEEEEe------CccHHHHHHHHHH-
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----G---------------KLIGVT------QPRRVAAVTVAKR- 106 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~-----~---------------~~i~~~------~P~r~l~~~~~~~- 106 (555)
+..|+.+-|+|+.||||||++..++-......+ | -+.++= .|++..-..+.+-
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl 109 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPL 109 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhh
Confidence 468999999999999999998777732221100 0 011111 2332221111111
Q ss_pred -----------HHHHhCCccCCEEEEEEecCCCCCchhhHHHhhcCCCCCCCceeEeecccc--cccchhHHHHHHHHHH
Q 008735 107 -----------VAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHE--RTVHTDVLLGLLKKVQ 173 (555)
Q Consensus 107 -----------~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~~~~~~~l~~~~~iIiDE~He--~~~~~d~ll~~l~~~~ 173 (555)
+.+.+ ..+|..-.|..++....+...+.+..++.....+.+++|+||.=. ...-....+.++.++.
T Consensus 110 ~~~~~~~~~~~i~~~L-~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~ 188 (252)
T COG1124 110 RPHGLSKSQQRIAELL-DQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELK 188 (252)
T ss_pred ccCCccHHHHHHHHHH-HHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHH
Confidence 11111 123333334455555566666666666666667789999999731 2223334445555544
Q ss_pred Hh
Q 008735 174 NA 175 (555)
Q Consensus 174 ~~ 175 (555)
+.
T Consensus 189 ~~ 190 (252)
T COG1124 189 KE 190 (252)
T ss_pred Hh
Confidence 43
No 220
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.87 E-value=0.0025 Score=69.82 Aligned_cols=66 Identities=26% Similarity=0.346 Sum_probs=53.2
Q ss_pred CcHHHHHHHHHHHhcC-CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 42 PIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 42 ~~~~~Q~~~i~~i~~~-~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
.+.+.|.+++..+... ..++|.||+|+|||+++..++..... .+.+|+++.|+..++..+.+++..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~--~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK--RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4678999999988776 78999999999999777666654322 355899999999999998888765
No 221
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.85 E-value=0.0023 Score=64.12 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc--CCCcEEEEeCccHHHHHHHHHHHHHHhC
Q 008735 43 IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC--RDGKLIGVTQPRRVAAVTVAKRVAEESG 112 (555)
Q Consensus 43 ~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~--~~~~~i~~~~P~r~l~~~~~~~~~~~~~ 112 (555)
+++-|.+++.. .+..++|.|..|||||+.+..-+...... .....|+++.+++.++..+..++....+
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 35678888888 77889999999999997654433221111 2345799999999999999998877554
No 222
>PRK09183 transposase/IS protein; Provisional
Probab=96.84 E-value=0.0065 Score=59.02 Aligned_cols=39 Identities=26% Similarity=0.460 Sum_probs=28.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
+..+.++++.||+|+|||+++..+..... ..+..+.++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~--~~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV--RAGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEe
Confidence 56789999999999999988876654332 2345666654
No 223
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.83 E-value=0.00075 Score=64.17 Aligned_cols=99 Identities=20% Similarity=0.211 Sum_probs=56.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHH---HHHHHHHHHHHhCCccCCEEEEEEecCCCCC
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA---AVTVAKRVAEESGVELGQRVGYSIRFDDRTS 130 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l---~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~ 130 (555)
+.+|+.+-++|++||||||+...++...... .+.|++-- .... .....+++.+.+. .+|..-.+..++....+
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f~g-~~i~~~~~~~~~~~v~elL~-~Vgl~~~~~~ryPhelS 111 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPT--SGEILFEG-KDITKLSKEERRERVLELLE-KVGLPEEFLYRYPHELS 111 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEEcC-cchhhcchhHHHHHHHHHHH-HhCCCHHHhhcCCcccC
Confidence 5689999999999999999987777544322 22333321 1000 1112222222221 22222223345566666
Q ss_pred chhhHHHhhcCCCCCCCceeEeeccc
Q 008735 131 TSTRIKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 131 ~~~~i~~~~~~~~l~~~~~iIiDE~H 156 (555)
...+.+..++....-+.+++|.||.-
T Consensus 112 GGQrQRi~IARALal~P~liV~DEpv 137 (268)
T COG4608 112 GGQRQRIGIARALALNPKLIVADEPV 137 (268)
T ss_pred chhhhhHHHHHHHhhCCcEEEecCch
Confidence 66666655666566678999999973
No 224
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.83 E-value=0.0042 Score=61.60 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=40.8
Q ss_pred HhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHH
Q 008735 36 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99 (555)
Q Consensus 36 ~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l 99 (555)
.+.+.++. ...+.+...+..+.+++|+|+|||||||++..++..........+++++....++
T Consensus 112 ~~~g~~~~-~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 112 VEAGIMTA-AQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HhcCCCCH-HHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 34444442 2333445556778899999999999999987766443222224577787766554
No 225
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.81 E-value=0.015 Score=55.46 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=20.6
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++.+++.||+|+|||+++..+...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999888766554
No 226
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.80 E-value=0.0046 Score=55.11 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=25.2
Q ss_pred EEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCcc
Q 008735 60 LIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 96 (555)
Q Consensus 60 ~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~ 96 (555)
++|.||+|+|||+++..++..... .+..++++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECC
Confidence 689999999999888777765533 34456665544
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.78 E-value=0.014 Score=58.48 Aligned_cols=37 Identities=27% Similarity=0.255 Sum_probs=26.2
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
.++++++.||||+|||+++..++.+.. ..+..|+++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t 218 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRT 218 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEE
Confidence 468999999999999987765554432 2355676664
No 228
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.78 E-value=0.0073 Score=60.83 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=33.4
Q ss_pred HHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHH
Q 008735 50 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99 (555)
Q Consensus 50 ~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l 99 (555)
+..++..+.+++|+|||||||||++..++.... ...+++.+....++
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~---~~~rivtiEd~~El 201 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKTLISAIP---PQERLITIEDTLEL 201 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHHHHcccC---CCCCEEEECCCccc
Confidence 344567889999999999999999877654432 23456777666544
No 229
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.78 E-value=0.0059 Score=55.66 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=25.4
Q ss_pred HHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 52 EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 52 ~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
+.+.+++++++.||+|+|||+++..+..+... .+..++++.
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~ 82 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFIT 82 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEE
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEee
Confidence 34567899999999999999777666544332 355666664
No 230
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.74 E-value=0.0027 Score=66.25 Aligned_cols=64 Identities=31% Similarity=0.397 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHhcC-CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHH
Q 008735 43 IASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA 108 (555)
Q Consensus 43 ~~~~Q~~~i~~i~~~-~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~ 108 (555)
+.+.|++++....+. ...+|.||+|+|||+.+..++..... .+.+|+++.|+.+++..+.+++.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk--~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK--QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH--cCCeEEEEcCchHHHHHHHHHhc
Confidence 357888999888777 67889999999999665555544322 36789999999999988888643
No 231
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.74 E-value=0.0046 Score=56.16 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|.||+||||||++..+.-..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4578999999999999999988776543
No 232
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.72 E-value=0.0053 Score=60.18 Aligned_cols=86 Identities=27% Similarity=0.276 Sum_probs=47.1
Q ss_pred HHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCc
Q 008735 52 EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST 131 (555)
Q Consensus 52 ~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~ 131 (555)
..+..+.+++++|||||||||++..++...... ..+++++....+... .+ ...+.+... ....+.
T Consensus 122 ~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~--~~~iv~iEd~~E~~l---------~~---~~~~~~~~~-~~~~~~ 186 (270)
T PF00437_consen 122 SAVRGRGNILISGPTGSGKTTLLNALLEEIPPE--DERIVTIEDPPELRL---------PG---PNQIQIQTR-RDEISY 186 (270)
T ss_dssp HCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT--TSEEEEEESSS-S-----------SC---SSEEEEEEE-TTTBSH
T ss_pred hccccceEEEEECCCccccchHHHHHhhhcccc--ccceEEeccccceee---------cc---cceEEEEee-cCcccH
Confidence 345678899999999999999997776544322 356777664433211 11 122333322 222222
Q ss_pred hhhHHHhhcCCCCCCCceeEeeccc
Q 008735 132 STRIKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 132 ~~~i~~~~~~~~l~~~~~iIiDE~H 156 (555)
...+... .-.+.++++++|+-
T Consensus 187 ~~~l~~~----LR~~pD~iiigEiR 207 (270)
T PF00437_consen 187 EDLLKSA----LRQDPDVIIIGEIR 207 (270)
T ss_dssp HHHHHHH----TTS--SEEEESCE-
T ss_pred HHHHHHH----hcCCCCcccccccC
Confidence 2333332 33567999999994
No 233
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.70 E-value=0.023 Score=55.18 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=20.5
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++.++++||+|+||||++..+...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999887766544
No 234
>PRK08727 hypothetical protein; Validated
Probab=96.69 E-value=0.0086 Score=57.26 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
.+.+++.||+|+|||.++..+..... ..+.++.++.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~--~~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAE--QAGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEe
Confidence 35699999999999977765544322 1244566654
No 235
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.67 E-value=0.017 Score=53.19 Aligned_cols=34 Identities=35% Similarity=0.457 Sum_probs=25.8
Q ss_pred HHHHH-HHHhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 47 EKRLV-EEVRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 47 Q~~~i-~~i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+.+.+ ..+..+++++++|||||||||++..++-.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 33343 45678999999999999999988665543
No 236
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.67 E-value=0.01 Score=57.79 Aligned_cols=104 Identities=22% Similarity=0.237 Sum_probs=58.2
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCC----cEE-EEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCc-
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDG----KLI-GVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST- 131 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~----~~i-~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~- 131 (555)
.+++|+|+||-|||+++..+...+...... ..| ++-.|...-....+..+...++..... ......
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~--------~~~~~~~ 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP--------RDRVAKL 133 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC--------CCCHHHH
Confidence 589999999999999998888766543221 123 333455555555555555555543221 111111
Q ss_pred hhhHHHhhcCCCCCCCceeEeecccc----cccchhHHHHHHHHH
Q 008735 132 STRIKEALLDPYLSRYSAIIVDEAHE----RTVHTDVLLGLLKKV 172 (555)
Q Consensus 132 ~~~i~~~~~~~~l~~~~~iIiDE~He----~~~~~d~ll~~l~~~ 172 (555)
...+..++.. -++.++||||+|. .......++..+|.+
T Consensus 134 ~~~~~~llr~---~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L 175 (302)
T PF05621_consen 134 EQQVLRLLRR---LGVRMLIIDEFHNLLAGSYRKQREFLNALKFL 175 (302)
T ss_pred HHHHHHHHHH---cCCcEEEeechHHHhcccHHHHHHHHHHHHHH
Confidence 1112233332 4579999999995 122334445555544
No 237
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.63 E-value=0.0089 Score=60.11 Aligned_cols=45 Identities=24% Similarity=0.159 Sum_probs=31.7
Q ss_pred HHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHH
Q 008735 52 EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99 (555)
Q Consensus 52 ~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l 99 (555)
.++..+.+++|+|+|||||||++..++.... ...+++.+.-..++
T Consensus 155 ~~v~~~~nili~G~tgSGKTTll~aL~~~ip---~~~ri~tiEd~~El 199 (332)
T PRK13900 155 HAVISKKNIIISGGTSTGKTTFTNAALREIP---AIERLITVEDAREI 199 (332)
T ss_pred HHHHcCCcEEEECCCCCCHHHHHHHHHhhCC---CCCeEEEecCCCcc
Confidence 4456789999999999999999866654432 23467776544443
No 238
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.59 E-value=0.0043 Score=61.82 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=40.0
Q ss_pred HhhcCCCcHHHHHHH-HHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHH
Q 008735 36 QQRKSLPIASVEKRL-VEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99 (555)
Q Consensus 36 ~~~~~l~~~~~Q~~~-i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l 99 (555)
.+.+.++ +.|.+. ..++..+.+++|+|+|||||||++-.++..........+++.+....++
T Consensus 124 v~~g~~~--~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 124 VTSKIMT--EAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHcCCCC--HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 3445544 344444 4556678899999999999999886665443222234577777766554
No 239
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0026 Score=60.43 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=23.0
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+|+||||++-.++-
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999988774
No 240
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0093 Score=53.16 Aligned_cols=87 Identities=25% Similarity=0.327 Sum_probs=48.6
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 133 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 133 (555)
+.+|+.+.|.||+||||||++..+.-.... ....+.+-. .... ...... ....++|..+ .+...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~-~~~~-~~~~~~--------~~~~i~~~~q----lS~G~ 85 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDG-KDIA-KLPLEE--------LRRRIGYVPQ----LSGGQ 85 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECC-EEcc-cCCHHH--------HHhceEEEee----CCHHH
Confidence 457899999999999999988776544321 122332221 1000 000000 1123555554 44444
Q ss_pred hHHHhhcCCCCCCCceeEeeccc
Q 008735 134 RIKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 134 ~i~~~~~~~~l~~~~~iIiDE~H 156 (555)
+.+..+......+.+++++||.-
T Consensus 86 ~~r~~l~~~l~~~~~i~ilDEp~ 108 (157)
T cd00267 86 RQRVALARALLLNPDLLLLDEPT 108 (157)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCC
Confidence 44444444455668999999963
No 241
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.55 E-value=0.017 Score=59.58 Aligned_cols=53 Identities=26% Similarity=0.351 Sum_probs=33.3
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEe--CccHHHHHHHHHHHHHHhC
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESG 112 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~--~P~r~l~~~~~~~~~~~~~ 112 (555)
..++++|++|+||||.+..++.... ..+.+++++ -|.|..+.++.+.+++..+
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~--~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~ 155 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQ--RKGFKPCLVCADTFRAGAFDQLKQNATKAR 155 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEcCcccchhHHHHHHHHhhccC
Confidence 4788999999999988766654332 223344443 3556666666555554433
No 242
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.53 E-value=0.019 Score=54.48 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=21.5
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..+..+++.||+|+|||+++..+....
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999998887666543
No 243
>PRK06893 DNA replication initiation factor; Validated
Probab=96.52 E-value=0.016 Score=55.27 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..+++.||+|+|||+++..+..+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999887666544
No 244
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.50 E-value=0.046 Score=53.46 Aligned_cols=92 Identities=20% Similarity=0.305 Sum_probs=49.6
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC--ccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 134 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~--P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 134 (555)
.+.++++||+|+||||.+..++.... ..+.++.++. +.|..+......+.+..+.. +..... .......
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~------~~~~~~-~~dp~~~ 142 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVD------VIKQKE-GADPAAV 142 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeE------EEeCCC-CCCHHHH
Confidence 46788899999999987766654432 2344554443 55666666666666555421 111101 1111111
Q ss_pred HHHhhcCCCCCCCceeEeecccc
Q 008735 135 IKEALLDPYLSRYSAIIVDEAHE 157 (555)
Q Consensus 135 i~~~~~~~~l~~~~~iIiDE~He 157 (555)
....+......++++||||=+-.
T Consensus 143 ~~~~l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 143 AFDAIQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCC
Confidence 11111111236799999999853
No 245
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.0058 Score=55.52 Aligned_cols=27 Identities=37% Similarity=0.493 Sum_probs=22.8
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999988776543
No 246
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.47 E-value=0.025 Score=52.96 Aligned_cols=98 Identities=17% Similarity=0.301 Sum_probs=66.2
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhc---CCeEEEEcCCCCchh-hHHHHHHHhccccCCCcEEEEeCccHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRK---NDILIIVGETGSGKT-TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTV 103 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~---~~~~ii~apTGsGKT-~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~ 103 (555)
++.+. +++-...+-+++.|.++...+.+ |++.+...-.|.||| .++|++.+.. .++...+.++.|.. +..+.
T Consensus 10 ~P~wL-l~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~L--Adg~~LvrviVpk~-Ll~q~ 85 (229)
T PF12340_consen 10 YPDWL-LFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALAL--ADGSRLVRVIVPKA-LLEQM 85 (229)
T ss_pred ChHHH-HHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHH--cCCCcEEEEEcCHH-HHHHH
Confidence 44443 57777889999999999999875 579999999999999 4566665544 23345566666664 56666
Q ss_pred HHHHHHHhCCccCCEEEEEEecCCCCC
Q 008735 104 AKRVAEESGVELGQRVGYSIRFDDRTS 130 (555)
Q Consensus 104 ~~~~~~~~~~~~~~~vg~~~~~~~~~~ 130 (555)
.+.+...++.-++..+ |...|+....
T Consensus 86 ~~~L~~~lg~l~~r~i-~~lpFsR~~~ 111 (229)
T PF12340_consen 86 RQMLRSRLGGLLNRRI-YHLPFSRSTP 111 (229)
T ss_pred HHHHHHHHHHHhCCee-EEecccCCCC
Confidence 6666666654444444 4555554443
No 247
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.45 E-value=0.0062 Score=55.72 Aligned_cols=112 Identities=22% Similarity=0.247 Sum_probs=55.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC-cc-----HHHHHHH--HHHHHHHhCCccCCEEEEEEec
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ-PR-----RVAAVTV--AKRVAEESGVELGQRVGYSIRF 125 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~-P~-----r~l~~~~--~~~~~~~~~~~~~~~vg~~~~~ 125 (555)
+..|+.+.+.||+||||||++-.+.-.... ..| .+.+-- +. ......+ ...+.+..+.. . +....
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G-~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~--~---~~~~~ 94 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSG-EILLDGKDLASLSPKELARKIAYVPQALELLGLA--H---LADRP 94 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc-EEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCH--h---HhcCC
Confidence 457899999999999999988777643321 122 333211 10 0110000 00022222211 0 01111
Q ss_pred CCCCCchhhHHHhhcCCCCCCCceeEeecc--cccccchhHHHHHHHHH
Q 008735 126 DDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKV 172 (555)
Q Consensus 126 ~~~~~~~~~i~~~~~~~~l~~~~~iIiDE~--He~~~~~d~ll~~l~~~ 172 (555)
....+...+.+..+......+.+++++||- +......+.+..++++.
T Consensus 95 ~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~ 143 (180)
T cd03214 95 FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143 (180)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 223455555555555566778899999995 22223333444444433
No 248
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.42 E-value=0.0032 Score=60.51 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=32.7
Q ss_pred eEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHH
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAA 100 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~ 100 (555)
..+|-||||||||-++.-++.-....-....|+++.|.+..+
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCC
Confidence 568899999999987777776655554566899999987665
No 249
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0094 Score=53.99 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=23.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|.||+||||||++..+.-..
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4589999999999999999987776543
No 250
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.0021 Score=58.70 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998777643
No 251
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.41 E-value=0.043 Score=57.18 Aligned_cols=54 Identities=31% Similarity=0.431 Sum_probs=33.3
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEe--CccHHHHHHHHHHHHHHhC
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESG 112 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~--~P~r~l~~~~~~~~~~~~~ 112 (555)
...++++|++|+||||.+..++.... ..+.++.++ -+.|..+.++...++...+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~kV~lV~~D~~R~aa~eQL~~la~~~g 150 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFK--KKGLKVGLVAADTYRPAAYDQLKQLAEKIG 150 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 35788999999999987766654332 223344443 3445656555555555544
No 252
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.39 E-value=0.0038 Score=45.47 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCCchhhHHHHHH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i 78 (555)
.|+.++|+||+||||||++-.+.
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999885554
No 253
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.38 E-value=0.0059 Score=60.97 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=39.9
Q ss_pred HhhcCCCcHHHHHHHHH-HHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHH
Q 008735 36 QQRKSLPIASVEKRLVE-EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99 (555)
Q Consensus 36 ~~~~~l~~~~~Q~~~i~-~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l 99 (555)
.+.+.++ +.|.+.+. ++..+++++|+|+|||||||++..++.......+..+++++....++
T Consensus 128 ~~~g~~~--~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 128 VERGIMT--AAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HhcCCCC--HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 3444443 34555554 56788999999999999998887666443212234567776655543
No 254
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.37 E-value=0.0082 Score=54.78 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|.||+||||||++..+.-.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457999999999999999998777644
No 255
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.34 E-value=0.014 Score=53.43 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=23.0
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|.||+||||||++..+.-.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998777644
No 256
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.34 E-value=0.013 Score=65.15 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=49.7
Q ss_pred cCCCcHHHHHHHHHHHh----c-----CCeEEEEcCCCCchh--hHHHHHHHhccccCCCcEEEEeCccHHHHHHHHH
Q 008735 39 KSLPIASVEKRLVEEVR----K-----NDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAK 105 (555)
Q Consensus 39 ~~l~~~~~Q~~~i~~i~----~-----~~~~ii~apTGsGKT--~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~ 105 (555)
..+..++-|.+.+..+. + ++.++|.||||+||| |++|.+..... .+++++|...+..|-.|+..
T Consensus 22 ~~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~---~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 22 PGFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA---EKKKLVISTATVALQEQLVS 96 (697)
T ss_pred CCCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH---cCCeEEEEcCCHHHHHHHHh
Confidence 56788888988766654 3 478999999999999 88888765442 25689999999999877753
No 257
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.0068 Score=65.02 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=24.2
Q ss_pred HHHhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 52 EEVRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 52 ~~i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
=.+..|+++.++||.||||||++.++..-
T Consensus 489 fti~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 489 FTIRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999999998776643
No 258
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.32 E-value=0.022 Score=54.51 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=25.7
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
.+..+++.||+|+|||+++..+...... .+..+.++.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~v~y~~ 80 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQ--RGRAVGYVP 80 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEE
Confidence 3468999999999999888666544321 244566654
No 259
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.0098 Score=55.67 Aligned_cols=31 Identities=32% Similarity=0.324 Sum_probs=26.8
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhcccc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFC 84 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~ 84 (555)
+..|++-.|.||+||||||++.++..+....
T Consensus 54 V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 54 VNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHhcccCCC
Confidence 5688999999999999999998888776654
No 260
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.30 E-value=0.017 Score=62.52 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=23.8
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|+||+||||||++-.++-..
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999997776443
No 261
>PRK08116 hypothetical protein; Validated
Probab=96.30 E-value=0.074 Score=51.91 Aligned_cols=35 Identities=20% Similarity=0.106 Sum_probs=23.6
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
..+++.|++|+|||+++..++.... . .+..++++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~-~-~~~~v~~~~ 149 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI-E-KGVPVIFVN 149 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-H-cCCeEEEEE
Confidence 4599999999999977766554432 1 144566654
No 262
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.28 E-value=0.068 Score=51.70 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=34.0
Q ss_pred HHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHH
Q 008735 51 VEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAK 105 (555)
Q Consensus 51 i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~ 105 (555)
.+.+.+++++++.||+|+|||+++..+..+.. ..|..++++ +...++..+..
T Consensus 99 ~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~-~~~el~~~Lk~ 150 (254)
T COG1484 99 VEFFERGENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFI-TAPDLLSKLKA 150 (254)
T ss_pred HHHhccCCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEE-EHHHHHHHHHH
Confidence 34455889999999999999977766655544 335566665 34444444443
No 263
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.26 E-value=0.00068 Score=67.74 Aligned_cols=26 Identities=31% Similarity=0.654 Sum_probs=23.2
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
.+..|+.+.+.||+||||||++..++
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHh
Confidence 35789999999999999999998876
No 264
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.25 E-value=0.031 Score=59.07 Aligned_cols=39 Identities=21% Similarity=0.065 Sum_probs=26.3
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCcc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 96 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~ 96 (555)
..+++.||+|+|||+++..+..+......+..++++...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 468999999999998776665544322234567776543
No 265
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.23 E-value=0.009 Score=53.20 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|.||.||||||++-++.
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIA 46 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIA 46 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHH
Confidence 4678999999999999999987776
No 266
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.016 Score=52.51 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+-+.||+|+||||++..+.-
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiat 50 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIAT 50 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHH
Confidence 46899999999999999999877763
No 267
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.22 E-value=0.053 Score=54.97 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCC--eEEEEcCCCCchhhHHHHHHHhc
Q 008735 46 VEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 46 ~Q~~~i~~i~~~~--~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..+.+...+..++ .+++.||+|+|||+++-.+....
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555566666 89999999999998887766544
No 268
>PRK05642 DNA replication initiation factor; Validated
Probab=96.22 E-value=0.04 Score=52.64 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=23.8
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
..+++.||+|+|||.++..+..... ..+.+++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEee
Confidence 5788999999999988765543321 1245666665
No 269
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.21 E-value=0.036 Score=58.90 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=90.7
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCc-EEEEecCccccccccC
Q 008735 280 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR-KVILATNIAETSVTIP 358 (555)
Q Consensus 280 ~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~-~vlvaT~~~e~Gvdip 358 (555)
..+.++|+|..-.+.+.-+.++|..+ ++.-.-+.|+....+|..++..+....+ -.|++|-+.+.|||+-
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~yr---------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLT 1112 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVYR---------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLT 1112 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHhh---------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccccccc
Confidence 34778999999888888888888776 8889999999999999999999987655 4689999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHh
Q 008735 359 GIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 418 (555)
Q Consensus 359 ~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 418 (555)
+.+.||- ||+..+ |.--.+++-|+-|-|-...-.+|+|.+....+
T Consensus 1113 AADTViF--------YdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1113 AADTVIF--------YDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred ccceEEE--------ecCCCC-------cchhhHHHHHHHhccCccceeeeeecccccHH
Confidence 9999997 886543 33334455555555555577899999776554
No 270
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.21 E-value=0.00076 Score=69.03 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=22.4
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
.+..|..+-|+||.||||||++..+.
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred EecCCceEEEECCCCccHHHHHHHHH
Confidence 45689999999999999999987665
No 271
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.20 E-value=0.0084 Score=63.13 Aligned_cols=68 Identities=19% Similarity=0.331 Sum_probs=53.9
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 41 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 41 l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
-.+...|..++..+.++...+|+||+|+|||.....+++..... ....|+++.|.-.++.++++.+.+
T Consensus 409 pkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-cCCceEEEcccchhHHHHHHHHHh
Confidence 34677899999999999999999999999995554444443322 345799999999999999887644
No 272
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=96.20 E-value=0.0021 Score=62.45 Aligned_cols=115 Identities=21% Similarity=0.253 Sum_probs=60.9
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEE---eCccHHHHHHHHHH---------------HHHHhCCccC
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGV---TQPRRVAAVTVAKR---------------VAEESGVELG 116 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~---~~P~r~l~~~~~~~---------------~~~~~~~~~~ 116 (555)
..|+-++++|||||||||.+..+.++.... |...+. --|..-++..+... |+..+.
T Consensus 271 R~GElTvlTGpTGsGKTTFlsEYsLDL~~Q--GVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y~HWadrFE---- 344 (514)
T KOG2373|consen 271 RPGELTVLTGPTGSGKTTFLSEYSLDLFTQ--GVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSYKHWADRFE---- 344 (514)
T ss_pred CCCceEEEecCCCCCceeEehHhhHHHHhh--hhhheeeeeecchHHHHHHHHHHHccCchHhhhhhhhHHHHHHh----
Confidence 356899999999999999988887765432 222221 12333333222211 111111
Q ss_pred CEEEEEEecCCCCCchhhHHHhhcCCCCCCCceeEeecccc----------cccchhHHHHHHHHHHHh
Q 008735 117 QRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHE----------RTVHTDVLLGLLKKVQNA 175 (555)
Q Consensus 117 ~~vg~~~~~~~~~~~~~~i~~~~~~~~l~~~~~iIiDE~He----------~~~~~d~ll~~l~~~~~~ 175 (555)
..--|-..+++.......+..+.......++.++|||..+- +-...|.+++++++....
T Consensus 345 rlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~Drf~~QD~iig~fR~fAT~ 413 (514)
T KOG2373|consen 345 RLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMALDRFHLQDRIIGYFRQFATQ 413 (514)
T ss_pred ccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhccchhhhHHHHHHHHHHHhhc
Confidence 11112223333333333343333334456688899998652 334567777777776543
No 273
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.16 E-value=0.11 Score=51.80 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=25.0
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEe
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT 93 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~ 93 (555)
.++.+++.||+|+|||+++..+..+.. ..+..+.++
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~ 190 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLL 190 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEE
Confidence 356899999999999988876665543 224444444
No 274
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.16 E-value=0.016 Score=53.63 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=23.6
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|.||+||||||++..+.-..
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4688999999999999999987776443
No 275
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.15 E-value=0.016 Score=53.93 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++++.||+|+||||++..+..+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCccchhHHHHHHHhcc
Confidence 479999999999999886665554
No 276
>PRK09087 hypothetical protein; Validated
Probab=96.13 E-value=0.035 Score=52.68 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCchhhHHHHHH
Q 008735 57 NDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..+++.||+|||||+++..+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4569999999999999886554
No 277
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.13 E-value=0.00021 Score=66.70 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=45.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 133 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 133 (555)
+..|..++++||+||||||++-++-...... .+.|.+- .+.+.......+...+||.++.....+..+
T Consensus 24 I~~gef~vliGpSGsGKTTtLkMINrLiept--~G~I~i~----------g~~i~~~d~~~LRr~IGYviQqigLFPh~T 91 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLKMINRLIEPT--SGEILID----------GEDISDLDPVELRRKIGYVIQQIGLFPHLT 91 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHHHHhcccCCC--CceEEEC----------CeecccCCHHHHHHhhhhhhhhcccCCCcc
Confidence 5689999999999999999987664332211 2233332 111112222233446778877666666666
Q ss_pred hHHHhhcCCCC
Q 008735 134 RIKEALLDPYL 144 (555)
Q Consensus 134 ~i~~~~~~~~l 144 (555)
...++..-|.+
T Consensus 92 v~eNIa~VP~L 102 (309)
T COG1125 92 VAENIATVPKL 102 (309)
T ss_pred HHHHHHhhhhh
Confidence 55544433433
No 278
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.027 Score=56.47 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=21.9
Q ss_pred HHHhcCC--eEEEEcCCCCchhhHHHHHHHh
Q 008735 52 EEVRKND--ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 52 ~~i~~~~--~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..+..++ +.|+.||+|+||||++..+...
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHHHHh
Confidence 4455554 7899999999999988666543
No 279
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.10 E-value=0.39 Score=49.78 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=88.4
Q ss_pred HHHHHHh-cCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCc
Q 008735 272 TIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI 350 (555)
Q Consensus 272 ~~~~~~~-~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~ 350 (555)
.++-... ....+.+|||+||.=+-..+...|.+. ++....+|.-.+..+-.+.-..|..|+.++|+-|-=
T Consensus 289 ~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~---------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER 359 (442)
T PF06862_consen 289 KILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE---------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTER 359 (442)
T ss_pred HHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc---------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhH
Confidence 3333333 455678999999999999999888865 888888999889999889999999999999999962
Q ss_pred c--ccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCC----CCCCEEEEccChhhHhc
Q 008735 351 A--ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR----EGPGKCFRLYPENEFDK 419 (555)
Q Consensus 351 ~--e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR----~~~G~~~~l~~~~~~~~ 419 (555)
+ =+=..+.+++.||-.|+... |.-..++..+.+.... .+...|..||++-+.-+
T Consensus 360 ~HFfrRy~irGi~~viFY~~P~~---------------p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 360 FHFFRRYRIRGIRHVIFYGPPEN---------------PQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred HhhhhhceecCCcEEEEECCCCC---------------hhHHHHHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 2 23346778999997443332 2333444555444432 12678999998765543
No 280
>PRK06620 hypothetical protein; Validated
Probab=96.10 E-value=0.016 Score=54.51 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=17.1
Q ss_pred CeEEEEcCCCCchhhHHHHH
Q 008735 58 DILIIVGETGSGKTTQLPQF 77 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~ 77 (555)
+.+++.||+|||||+++..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 56899999999999888654
No 281
>PRK10867 signal recognition particle protein; Provisional
Probab=96.09 E-value=0.078 Score=55.15 Aligned_cols=91 Identities=26% Similarity=0.315 Sum_probs=49.3
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcE--EEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhH
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKL--IGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 135 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~--i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 135 (555)
..++++|++||||||.+..++...... .+.+ ++-.-+.|..+..+.+.+++..+..+ +.. ..........
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v-----~~~--~~~~dp~~i~ 172 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV-----FPS--GDGQDPVDIA 172 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEccccchHHHHHHHHHHhhcCCeE-----Eec--CCCCCHHHHH
Confidence 468899999999998776666543222 1333 34445677777666666665544321 111 0111111212
Q ss_pred HHhhcCCCCCCCceeEeeccc
Q 008735 136 KEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 136 ~~~~~~~~l~~~~~iIiDE~H 156 (555)
...........+++||||=+=
T Consensus 173 ~~a~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 173 KAALEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHHHHhcCCCEEEEeCCC
Confidence 222222223568999999984
No 282
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.07 E-value=0.058 Score=56.78 Aligned_cols=39 Identities=23% Similarity=0.134 Sum_probs=26.1
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCcc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 96 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~ 96 (555)
..+++.|++|+|||+++..+.........+.+++++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~ 180 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD 180 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 458899999999998875554432222345677777654
No 283
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.06 E-value=0.017 Score=64.26 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=51.1
Q ss_pred HHHhhcCCCcHHHHHHHHHHH----hcCCeEEEEcCCCCchh--hHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHH
Q 008735 34 ILQQRKSLPIASVEKRLVEEV----RKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 34 ~~~~~~~l~~~~~Q~~~i~~i----~~~~~~ii~apTGsGKT--~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
....-..+.+++.|.+++..+ .+++.+++.||||+||| +++|.+..... .+..+++..+++.+-.|...+
T Consensus 7 ~~~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~---~~~~viist~t~~lq~q~~~~ 82 (654)
T COG1199 7 LAVAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE---EGKKVIISTRTKALQEQLLEE 82 (654)
T ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH---cCCcEEEECCCHHHHHHHHHh
Confidence 344556778889999887554 56777999999999999 66666655432 236788888888877666554
No 284
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.03 E-value=0.021 Score=56.35 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHHHhcC-CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHH
Q 008735 42 PIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99 (555)
Q Consensus 42 ~~~~~Q~~~i~~i~~~-~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l 99 (555)
.+.+-+.+++..+-.. .+++|+|.|||||||++-.+...... ..+++++.-+.++
T Consensus 157 t~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~---~eRvItiEDtaEL 212 (355)
T COG4962 157 TMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDS---DERVITIEDTAEL 212 (355)
T ss_pred CcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCC---cccEEEEeehhhh
Confidence 3455566666665554 59999999999999999777665543 3378888766555
No 285
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.02 E-value=0.014 Score=65.22 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=43.6
Q ss_pred CcHHHHHHHHH----HHhcCCeEEEEcCCCCchhh--HHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 42 PIASVEKRLVE----EVRKNDILIIVGETGSGKTT--QLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 42 ~~~~~Q~~~i~----~i~~~~~~ii~apTGsGKT~--~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
|+|+.|.+.++ ++.++++.++.+|||+|||. +.+.+.+... .....+|+++..+..-..|..+.+.+
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~-~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQE-KPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHh-ccccccEEEEcccchHHHHHHHHHHh
Confidence 34778887655 45689999999999999993 3333222211 11225788888777666666666554
No 286
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.044 Score=57.32 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=23.6
Q ss_pred HHHHhcCC---eEEEEcCCCCchhhHHHHHHHhcc
Q 008735 51 VEEVRKND---ILIIVGETGSGKTTQLPQFLFHAG 82 (555)
Q Consensus 51 i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~~ 82 (555)
...+.+++ .++++||.|+||||++-.++....
T Consensus 31 ~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 31 QNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34455555 369999999999998877765543
No 287
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.98 E-value=0.035 Score=54.12 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCchhhHHHHHHH
Q 008735 57 NDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
..++++.||+|+|||+++-.+..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999988866653
No 288
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.98 E-value=0.017 Score=66.72 Aligned_cols=107 Identities=22% Similarity=0.313 Sum_probs=88.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCC--CcEEEEecCccccccccCCeE
Q 008735 284 DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG--FRKVILATNIAETSVTIPGIK 361 (555)
Q Consensus 284 ~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g--~~~vlvaT~~~e~Gvdip~v~ 361 (555)
++|||.+-.....-+...+... ++....++|+++.++|...++.|.++ ..-.+++|...+.|+|+-..+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~---------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL---------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 7999999999999888888875 56788999999999999999999986 456788888999999999999
Q ss_pred EEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEccChhhH
Q 008735 362 YVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEF 417 (555)
Q Consensus 362 ~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~ 417 (555)
.||. ||+ |...+...|...||.|.| +=.+|++.++...
T Consensus 784 ~vi~--------~d~----------~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 784 TVIL--------FDP----------WWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred eEEE--------ecc----------ccChHHHHHHHHHHHHhcCcceeEEEEeecCCcH
Confidence 9998 884 555666666666666655 5678888877654
No 289
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.98 E-value=0.029 Score=55.93 Aligned_cols=93 Identities=24% Similarity=0.184 Sum_probs=52.3
Q ss_pred HHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCC
Q 008735 49 RLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDR 128 (555)
Q Consensus 49 ~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~ 128 (555)
.++.++..+++++++|+|||||||++-.++..-.. ..+++.+.-+.++. ..-...+....+....
T Consensus 135 yL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~---~~rivtIEdt~E~~------------~~~~n~~~l~~r~~~~ 199 (312)
T COG0630 135 YLWLAIEARKSIIICGGTASGKTTLLNALLDFIPP---EERIVTIEDTPELK------------LPHENWVQLVTREGES 199 (312)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCc---hhcEEEEecccccc------------CCCCCEEEEEecCCCC
Confidence 37888899999999999999999988776655432 23455554332221 1111222222221111
Q ss_pred CCchhhHHHhhcCCCCCCCceeEeeccc
Q 008735 129 TSTSTRIKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 129 ~~~~~~i~~~~~~~~l~~~~~iIiDE~H 156 (555)
.........++....=.+.++||++|++
T Consensus 200 ~~~~v~~~dll~aalR~rPd~IivgEvr 227 (312)
T COG0630 200 GSSEVSLEDLLRAALRQRPDYIIVGELR 227 (312)
T ss_pred CccccCHHHHHHHHHhcCCCeEEEeeee
Confidence 1111222233333333568999999996
No 290
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.88 E-value=0.085 Score=57.84 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=22.8
Q ss_pred HHHHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 50 LVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 50 ~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+...+.+|+ -++++||.|+||||++..+....
T Consensus 28 L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 28 LTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334455553 56899999999998887666544
No 291
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.87 E-value=0.058 Score=56.23 Aligned_cols=38 Identities=21% Similarity=0.096 Sum_probs=24.9
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 95 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P 95 (555)
..+++.||+|+|||+++..+..+......+..++++..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 46889999999999877555443322222456777653
No 292
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.86 E-value=0.08 Score=47.99 Aligned_cols=52 Identities=23% Similarity=0.228 Sum_probs=34.8
Q ss_pred HHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCC----cEEEEeCccHHHHHHH
Q 008735 52 EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDG----KLIGVTQPRRVAAVTV 103 (555)
Q Consensus 52 ~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~----~~i~~~~P~r~l~~~~ 103 (555)
-.+..|+.+.++||+|+||||++..+........+. +.-+.-.|.+.+|...
T Consensus 22 l~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 22 LDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred eeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 346789999999999999999998776554433221 1223345677776543
No 293
>PRK06921 hypothetical protein; Provisional
Probab=95.85 E-value=0.15 Score=49.78 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=26.7
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 95 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P 95 (555)
.+.++++.||+|+|||+++..++.+.. ...+..++++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~-~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM-RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh-hhcCceEEEEEH
Confidence 467899999999999988766554432 221456666653
No 294
>PHA02533 17 large terminase protein; Provisional
Probab=95.85 E-value=0.072 Score=57.12 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 40 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
.+++.++|++++..+..++..++.-+=..|||+++..+++......++..++++.|++.-+..+.+.+..
T Consensus 57 Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred ecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4778899999999987778888888999999988876554443334566899999999888877766553
No 295
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.84 E-value=0.048 Score=55.46 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.+.||+||||||++..+.-
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaG 54 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHC
Confidence 45789999999999999999987763
No 296
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.84 E-value=0.13 Score=46.54 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=17.6
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999887666544
No 297
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.84 E-value=0.1 Score=49.30 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=25.4
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 95 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P 95 (555)
..+.|.||+|+|||.++..+..+.....++.+++++..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 36899999999999877665544332334567777753
No 298
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.82 E-value=0.047 Score=57.99 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=22.5
Q ss_pred HHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 53 EVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 53 ~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
++.+++ .++++||.|+||||++..+....
T Consensus 36 ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 36 TILNDRLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred HHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345565 68999999999998887776554
No 299
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.74 E-value=0.047 Score=57.70 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=22.7
Q ss_pred HHHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 51 VEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 51 i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
...+.+++ .+++.||+|+||||++..++...
T Consensus 27 ~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 27 INALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34455554 36999999999999887776544
No 300
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.74 E-value=0.015 Score=52.43 Aligned_cols=47 Identities=19% Similarity=0.095 Sum_probs=27.4
Q ss_pred EEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHH
Q 008735 61 IIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA 108 (555)
Q Consensus 61 ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~ 108 (555)
+|+|+-|-|||+++.+++...... ....|+++.|....+....+...
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-~~~~I~vtAP~~~~~~~lf~~~~ 47 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-GKIRILVTAPSPENVQTLFEFAE 47 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------EEEE-SS--S-HHHHHCC-
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-cCceEEEecCCHHHHHHHHHHHH
Confidence 589999999998887776554322 23579999999988877766543
No 301
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.72 E-value=0.0097 Score=54.62 Aligned_cols=29 Identities=34% Similarity=0.536 Sum_probs=24.1
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+..|+.++|+||.||||||++..+-...
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 45789999999999999999997665443
No 302
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.70 E-value=0.04 Score=53.62 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=24.3
Q ss_pred HHHHHHh-cC--CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 49 RLVEEVR-KN--DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 49 ~~i~~i~-~~--~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..+..+. .+ +++++.|||||||||++..++-..
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc
Confidence 3344443 34 689999999999999998777544
No 303
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.69 E-value=0.057 Score=60.56 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=23.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+|++||||||++-.+.-.
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998777643
No 304
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.64 E-value=0.046 Score=52.10 Aligned_cols=39 Identities=13% Similarity=0.301 Sum_probs=28.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
+..|..+++.|++|+|||+++.+++..... ++..++++.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~--~g~~~~yi~ 59 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ--NGYSVSYVS 59 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh--CCCcEEEEe
Confidence 456889999999999999987777665321 234455554
No 305
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.64 E-value=0.061 Score=56.51 Aligned_cols=39 Identities=21% Similarity=0.089 Sum_probs=26.2
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCcc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 96 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~ 96 (555)
..+++.||+|+|||+++-.+.........+..++++...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 468999999999998776555443222234567777543
No 306
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.63 E-value=0.13 Score=61.36 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=47.2
Q ss_pred CCcHHHHHHHHHHHhc--CCeEEEEcCCCCchhhHHHHHHHhc--cccCCCcEEEEeCccHHHHHHHH
Q 008735 41 LPIASVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHA--GFCRDGKLIGVTQPRRVAAVTVA 104 (555)
Q Consensus 41 l~~~~~Q~~~i~~i~~--~~~~ii~apTGsGKT~~l~~~i~~~--~~~~~~~~i~~~~P~r~l~~~~~ 104 (555)
..+++-|.+++..+.. ++.++|+|..|+||||++..++... .....+..|+.+.|+--++..+.
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH
Confidence 3678999999999884 5899999999999998875554321 11223557888899987776553
No 307
>PRK12377 putative replication protein; Provisional
Probab=95.63 E-value=0.2 Score=48.09 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEe
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT 93 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~ 93 (555)
..++++.||+|+|||+++..+..... ..+..++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i 135 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVV 135 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEE
Confidence 46899999999999977766654432 224445554
No 308
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.63 E-value=0.066 Score=58.83 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=24.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|+||+||||||++-.++-..
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998777554
No 309
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.60 E-value=0.17 Score=61.12 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=48.1
Q ss_pred CCCcHHHHHHHHHHHhc--CCeEEEEcCCCCchhhHHHHHHHhcc--ccCCCcEEEEeCccHHHHHHHH
Q 008735 40 SLPIASVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHAG--FCRDGKLIGVTQPRRVAAVTVA 104 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~--~~~~ii~apTGsGKT~~l~~~i~~~~--~~~~~~~i~~~~P~r~l~~~~~ 104 (555)
...+++-|.+++..+.. ++.++|+|..|+||||++..++.... ....+..|+.+.|+--++..+.
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 965 MEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH
Confidence 34678999999999886 47999999999999988866553321 1223456888899987775543
No 310
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.60 E-value=0.07 Score=58.15 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=23.6
Q ss_pred HHHHHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 49 RLVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 49 ~~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+...+..++ .++++||.|+|||+++..+....
T Consensus 27 ~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 27 ALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3344455554 57999999999998887666543
No 311
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.042 Score=59.25 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=24.7
Q ss_pred HHHHHHhcCC---eEEEEcCCCCchhhHHHHHHHhcc
Q 008735 49 RLVEEVRKND---ILIIVGETGSGKTTQLPQFLFHAG 82 (555)
Q Consensus 49 ~~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~~ 82 (555)
.+...+.+++ -++++||.|+||||++..+.....
T Consensus 27 ~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 27 ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455566665 568999999999988877765543
No 312
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.56 E-value=0.13 Score=50.33 Aligned_cols=41 Identities=29% Similarity=0.469 Sum_probs=29.8
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
-+..|..++|.|++|+|||+++.+++...... .+..++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS 66 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTIS 66 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEE
Confidence 35678999999999999999888877665322 144565554
No 313
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.54 E-value=0.044 Score=48.42 Aligned_cols=25 Identities=40% Similarity=0.692 Sum_probs=22.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|+||.||||||++....
T Consensus 33 v~~Ge~vaiVG~SGSGKSTLl~vlA 57 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTLLAVLA 57 (228)
T ss_pred ecCCceEEEEcCCCCcHHhHHHHHh
Confidence 5678999999999999999987765
No 314
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=95.54 E-value=0.072 Score=54.32 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=23.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|.||+||||||++-.+.-.
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl 42 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRL 42 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 457999999999999999999877744
No 315
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.53 E-value=0.17 Score=52.70 Aligned_cols=92 Identities=25% Similarity=0.279 Sum_probs=48.5
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEE--EEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhH
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLI--GVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 135 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i--~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 135 (555)
..++++|++|+||||.+..++...... .+.++ +-.-+.|..+.++.+.++...+..+ . .... ........
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~-~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~---~---~~~~-~~~P~~i~ 171 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKK-QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPV---F---ALGK-GQSPVEIA 171 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHh-CCCeEEEEeccccchHHHHHHHHHHHhcCCce---E---ecCC-CCCHHHHH
Confidence 378899999999998876666542211 13333 3334566666666666655444321 1 1101 11111111
Q ss_pred HHhhcCCCCCCCceeEeecccc
Q 008735 136 KEALLDPYLSRYSAIIVDEAHE 157 (555)
Q Consensus 136 ~~~~~~~~l~~~~~iIiDE~He 157 (555)
...+.......+++||+|=+-.
T Consensus 172 ~~al~~~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 172 RRALEYAKENGFDVVIVDTAGR 193 (428)
T ss_pred HHHHHHHHhcCCCEEEEeCCCc
Confidence 1222211235689999999853
No 316
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.51 E-value=0.023 Score=57.72 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=21.0
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+..++|+|||||||||++..++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~ 157 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRE 157 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999988665543
No 317
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.49 E-value=0.092 Score=51.01 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=32.4
Q ss_pred CCCCCchhhHHHhhcCCCCCCCceeEeeccc--ccccchhHHHHHHHHHHHh
Q 008735 126 DDRTSTSTRIKEALLDPYLSRYSAIIVDEAH--ERTVHTDVLLGLLKKVQNA 175 (555)
Q Consensus 126 ~~~~~~~~~i~~~~~~~~l~~~~~iIiDE~H--e~~~~~d~ll~~l~~~~~~ 175 (555)
....+...+.+...+.....+.+++..||+- .....+..++.+|+++-+.
T Consensus 139 P~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~ 190 (339)
T COG1135 139 PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRE 190 (339)
T ss_pred chhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHH
Confidence 3333444444444444446778999999974 4566778888888887655
No 318
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.49 E-value=0.037 Score=60.52 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=24.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.++|||||||||++-.+....
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~ 379 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLY 379 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 6789999999999999999987777443
No 319
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.47 E-value=0.24 Score=48.80 Aligned_cols=90 Identities=20% Similarity=0.278 Sum_probs=57.7
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC--ccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhH
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 135 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~--P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 135 (555)
.+++++|-+|+||||.+.-+..... .++.++++.. .-|+.+.++.+.|++..+..+ +.. .....+...+
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~--~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~v---I~~----~~G~DpAaVa 210 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLK--QQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPV---ISG----KEGADPAAVA 210 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHH--HCCCeEEEEecchHHHHHHHHHHHHHHHhCCeE---Ecc----CCCCCcHHHH
Confidence 3778899999999988777665442 3355666654 558899999988888876542 110 1111112222
Q ss_pred HHhhcCCCCCCCceeEeeccc
Q 008735 136 KEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 136 ~~~~~~~~l~~~~~iIiDE~H 156 (555)
-.......-++++++++|=|-
T Consensus 211 fDAi~~Akar~~DvvliDTAG 231 (340)
T COG0552 211 FDAIQAAKARGIDVVLIDTAG 231 (340)
T ss_pred HHHHHHHHHcCCCEEEEeCcc
Confidence 233333345789999999985
No 320
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.45 E-value=0.06 Score=50.21 Aligned_cols=26 Identities=27% Similarity=0.554 Sum_probs=22.6
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
|..|+.+.|+||.||||||++..+--
T Consensus 27 I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 27 INQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred eCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 56899999999999999999876654
No 321
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.046 Score=57.50 Aligned_cols=27 Identities=30% Similarity=0.571 Sum_probs=23.6
Q ss_pred HHHhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 52 EEVRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 52 ~~i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
-.+..|+.+.++|++||||||++-.++
T Consensus 342 ~t~~~g~~talvG~SGaGKSTLl~lL~ 368 (559)
T COG4988 342 LTIKAGQLTALVGASGAGKSTLLNLLL 368 (559)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHh
Confidence 346789999999999999999987776
No 322
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.43 E-value=0.037 Score=50.74 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=25.4
Q ss_pred eEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 95 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P 95 (555)
.++|.||+|+|||++..+++..... .+..++++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~--~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA--RGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH--CCCcEEEEEC
Confidence 3789999999999888888776542 3445666643
No 323
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=95.40 E-value=0.073 Score=54.38 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=22.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.+.||+||||||++..+.-
T Consensus 28 i~~Ge~~~llGpsGsGKSTLLr~iaG 53 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999887774
No 324
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.086 Score=56.50 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=23.5
Q ss_pred HHHHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 50 LVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 50 ~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+...+..++ .+++.||.|+||||++..++...
T Consensus 28 L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 28 LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445556654 37899999999998887776543
No 325
>PRK05973 replicative DNA helicase; Provisional
Probab=95.38 E-value=0.049 Score=51.80 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 48 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 48 ~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
.++.--+..|..++|.|++|+|||++..+++..... .+..++++.
T Consensus 55 ~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~--~Ge~vlyfS 99 (237)
T PRK05973 55 EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK--SGRTGVFFT 99 (237)
T ss_pred HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEE
Confidence 344455667899999999999999988888876643 244555554
No 326
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=95.38 E-value=0.03 Score=57.85 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=22.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.+.||+||||||++-.+.-
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaG 51 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAING 51 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhc
Confidence 45899999999999999999887764
No 327
>PRK04195 replication factor C large subunit; Provisional
Probab=95.37 E-value=0.13 Score=54.99 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+.+++.||+|+|||+++-.++.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999887776655
No 328
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.36 E-value=0.03 Score=63.04 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.++-.
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999999998777643
No 329
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.35 E-value=0.09 Score=54.01 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=22.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|.||+||||||++..+.-
T Consensus 42 i~~Ge~~~llGpsGsGKSTLLr~IaG 67 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAG 67 (377)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999877763
No 330
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.35 E-value=0.072 Score=58.31 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=46.6
Q ss_pred CcHHHHHHHHHHH---hc--CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHH
Q 008735 42 PIASVEKRLVEEV---RK--NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 110 (555)
Q Consensus 42 ~~~~~Q~~~i~~i---~~--~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~ 110 (555)
..++-|.++++.+ .+ .+.++++|.-|=|||..+.+++...........|+++.|+...++.+.+...+-
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~ 284 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKG 284 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHh
Confidence 3344455544443 33 348999999999999888866643332222458999999999998887765443
No 331
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.34 E-value=0.019 Score=49.44 Aligned_cols=26 Identities=31% Similarity=0.653 Sum_probs=22.9
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
.|.+|+.+-+.||.||||||++..++
T Consensus 24 Tia~GeivtlMGPSGcGKSTLls~~~ 49 (213)
T COG4136 24 TIAKGEIVTLMGPSGCGKSTLLSWMI 49 (213)
T ss_pred EecCCcEEEEECCCCccHHHHHHHHH
Confidence 35689999999999999999987776
No 332
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.33 E-value=0.076 Score=50.31 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=25.6
Q ss_pred HHHHHHHhc--CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 48 KRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 48 ~~~i~~i~~--~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+++.+.+.+ ++.++|.||-|+|||+++-.++...
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 344455555 4799999999999999887776654
No 333
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.33 E-value=0.04 Score=60.82 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=47.2
Q ss_pred CCcHHHHHHHHHH-HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 41 LPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 41 l~~~~~Q~~~i~~-i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
+.+..-|++++.. +......+|.|-+|+||||.+..++..... .|+.|+++.=+..++..+...+..
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~--~gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA--LGKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH--cCCeEEEEehhhHHHHHHHHHHhc
Confidence 4455567766655 556678899999999999887666644332 267888888888777776665543
No 334
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.32 E-value=0.021 Score=53.09 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=23.1
Q ss_pred eEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
.++|+|||||||||++..++..... ..+..++.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~-~~~~~i~t~e 37 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK-NKTHHILTIE 37 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh-cCCcEEEEEc
Confidence 5789999999999988665544322 2233455544
No 335
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.32 E-value=0.036 Score=62.06 Aligned_cols=25 Identities=12% Similarity=0.397 Sum_probs=21.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHH
Q 008735 280 EAPGDILVFLTGQEEIESVERLVQE 304 (555)
Q Consensus 280 ~~~~~iLVF~~t~~~~~~l~~~L~~ 304 (555)
.+++++||||+.+..|.++.+.|..
T Consensus 293 ~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 293 QGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCCCcEEEEEcchHHHHHHHHHHHh
Confidence 3567899999999999999998865
No 336
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=0.018 Score=59.82 Aligned_cols=28 Identities=39% Similarity=0.559 Sum_probs=24.1
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.|..|+.+.|+|++||||||++..++.-
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF 401 (591)
T KOG0057|consen 374 TIPKGEKVAIVGSNGSGKSTILRLLLRF 401 (591)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998887743
No 337
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.30 E-value=0.039 Score=51.61 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=22.6
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+-+.||+|+||||.+.+++-
T Consensus 25 v~~G~i~GllG~NGAGKTTtfRmILg 50 (300)
T COG4152 25 VPPGEIFGLLGPNGAGKTTTFRMILG 50 (300)
T ss_pred ecCCeEEEeecCCCCCccchHHHHhc
Confidence 45789999999999999999888773
No 338
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.30 E-value=0.14 Score=57.02 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=67.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecC-ccccccccCCe
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-IAETSVTIPGI 360 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-~~e~Gvdip~v 360 (555)
+.+++|.+||+.=+.+.++.+.+.+... ++.+..+||+++..+|.++++...+|...|+|+|. .+...+.+.++
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~-----~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l 384 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPL-----GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNL 384 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhc-----CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhccc
Confidence 6689999999999999999888775432 57899999999999999999999999999999997 45556788899
Q ss_pred EEEE
Q 008735 361 KYVI 364 (555)
Q Consensus 361 ~~VI 364 (555)
.+||
T Consensus 385 ~lvV 388 (681)
T PRK10917 385 GLVI 388 (681)
T ss_pred ceEE
Confidence 8888
No 339
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.29 E-value=0.0078 Score=64.13 Aligned_cols=103 Identities=23% Similarity=0.282 Sum_probs=54.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccC------CCcEEEEeC-----ccHHHHHHHH----------HHHHHH-h
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCR------DGKLIGVTQ-----PRRVAAVTVA----------KRVAEE-S 111 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~------~~~~i~~~~-----P~r~l~~~~~----------~~~~~~-~ 111 (555)
+..|+.++|.||+|||||+++..+.-.-.+.. .+..+++++ |...+-.++. +.+.+. .
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~ 495 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLH 495 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHH
Confidence 45899999999999999988866652222211 122344442 1111111110 001000 0
Q ss_pred CCccCC---EEEEEEecCCCCCchhhHHHhhcCCCCCCCceeEeeccc
Q 008735 112 GVELGQ---RVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 112 ~~~~~~---~vg~~~~~~~~~~~~~~i~~~~~~~~l~~~~~iIiDE~H 156 (555)
...++. ...-..+.+...+..++.+..++.-.+++.+++|+|||=
T Consensus 496 ~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEAT 543 (604)
T COG4178 496 KVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543 (604)
T ss_pred HcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecch
Confidence 011111 011112244556666776667777778999999999984
No 340
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.28 E-value=0.08 Score=54.98 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+++|.||+|+|||+++-.++.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999998887776543
No 341
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.28 E-value=0.044 Score=53.39 Aligned_cols=49 Identities=27% Similarity=0.334 Sum_probs=30.8
Q ss_pred HHHHHHHHHHH-h-cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 44 ASVEKRLVEEV-R-KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 44 ~~~Q~~~i~~i-~-~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
.+.|.+.+..+ . .+..++|+|||||||||++..++.... .....++.+.
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~--~~~~~iitiE 115 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN--TPEKNIITVE 115 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC--CCCCeEEEEC
Confidence 33455555544 3 345899999999999998866654432 1234555554
No 342
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=95.27 E-value=0.25 Score=48.22 Aligned_cols=52 Identities=10% Similarity=0.037 Sum_probs=34.1
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 110 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~ 110 (555)
.-.++-=.||.||--++..+|++.....++ +.+.+.....|.......+.+.
T Consensus 63 ~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~-r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 63 AGFFLGDGTGVGKGRQIAGIILENWLRGRK-RAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred cEEEeccCCCcCccchhHHHHHHHHHcCCC-ceEEEECChhhhhHHHHHHHHh
Confidence 345555579999998888888877654333 4555666666666655555543
No 343
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.26 E-value=0.035 Score=57.63 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=28.5
Q ss_pred CCcHHHHHHHHHHHhc--CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 41 LPIASVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 41 l~~~~~Q~~~i~~i~~--~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+...+.+.+.+..+.+ +.-++++|||||||||.+-.++...
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4445566666665543 3578899999999998776666554
No 344
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.26 E-value=0.095 Score=57.59 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+|++||||||++-.++-.
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999777643
No 345
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.24 E-value=0.031 Score=62.81 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=24.0
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|+||+||||||++-.+.-..
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4689999999999999999998776443
No 346
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.24 E-value=0.15 Score=45.80 Aligned_cols=28 Identities=43% Similarity=0.636 Sum_probs=23.5
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGF 83 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~ 83 (555)
.-..++|+|.+||||||++..+.....+
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~~~~ 63 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAGMGF 63 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhhccc
Confidence 4468999999999999999888866554
No 347
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.22 E-value=0.091 Score=57.31 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=24.1
Q ss_pred HHHHHHhcCCe---EEEEcCCCCchhhHHHHHHHhc
Q 008735 49 RLVEEVRKNDI---LIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 49 ~~i~~i~~~~~---~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+...+.+|+. ++++||.|+||||++-.+....
T Consensus 27 ~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 27 ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34455666664 6899999999998887665443
No 348
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.22 E-value=0.28 Score=49.23 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCC---eEEEEcCCCCchhhHHHHHHHh
Q 008735 47 EKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 47 Q~~~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+.+...+.+++ .+++.||+|+|||+++-.+...
T Consensus 30 ~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 30 KETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 334444455553 4445899999999887666543
No 349
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.17 E-value=0.1 Score=57.23 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=23.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|+|++||||||++-.+.-..
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4689999999999999999988877443
No 350
>PLN03025 replication factor C subunit; Provisional
Probab=95.17 E-value=0.13 Score=51.82 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++++.||+|+|||+++-.++.+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999888666544
No 351
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.16 E-value=0.039 Score=56.22 Aligned_cols=42 Identities=29% Similarity=0.326 Sum_probs=27.1
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCcc
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 96 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~ 96 (555)
..+..++|+|||||||||++..++..........+++.+.-.
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp 188 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDP 188 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 356688999999999998886655433222223456665433
No 352
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.1 Score=56.46 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=23.8
Q ss_pred HHHHHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 49 RLVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 49 ~~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+...+.+++ -++++||.|+|||+++..++...
T Consensus 26 ~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 26 ALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555564 56999999999998887666554
No 353
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.064 Score=55.70 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=22.6
Q ss_pred HHHHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 50 LVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 50 ~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+...+.+|+ .+++.||.|+||||++-.+....
T Consensus 28 L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 28 IQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred HHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 344455554 38899999999998886665443
No 354
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.12 E-value=0.069 Score=56.34 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=21.4
Q ss_pred HHHhcC---CeEEEEcCCCCchhhHHHHHHHh
Q 008735 52 EEVRKN---DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 52 ~~i~~~---~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++..| +..+++||.|+||||++-.+...
T Consensus 27 ~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 27 NAFTLNKIPQSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred HHHHcCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 344455 46899999999999887666543
No 355
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.10 E-value=0.19 Score=56.27 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=22.0
Q ss_pred HHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 52 EEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 52 ~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..+..++ -++++||.|+||||++..++...
T Consensus 30 naI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 30 NALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3444543 35899999999998887776554
No 356
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=95.09 E-value=0.029 Score=55.98 Aligned_cols=26 Identities=23% Similarity=0.588 Sum_probs=22.6
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
.|.+|+.+.++|.+||||||++.+..
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLt 370 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLT 370 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHh
Confidence 46789999999999999999886655
No 357
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.08 E-value=0.11 Score=51.45 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.8
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.+.||+||||||++-.++-
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~g 53 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAG 53 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999987773
No 358
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.08 E-value=0.025 Score=54.50 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCcc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 96 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~ 96 (555)
..-++|+|||||||||.+..++-..... ....|+-+.-.
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~-~~~HIlTIEDP 163 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKH-KAKHILTIEDP 163 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhcc-CCcceEEecCc
Confidence 4578999999999997776666443322 23356655433
No 359
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.08 E-value=0.096 Score=56.74 Aligned_cols=27 Identities=33% Similarity=0.488 Sum_probs=23.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 345 i~~G~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 345 VPPGERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999877643
No 360
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.05 E-value=0.12 Score=46.35 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
++.++|+||+|||||+++-.+.+..
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999998876655443
No 361
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.05 E-value=0.076 Score=57.21 Aligned_cols=38 Identities=29% Similarity=0.277 Sum_probs=26.5
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 95 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P 95 (555)
..++|.|++|+|||.++-.+.........+..++++..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 35899999999999887666654432234567777753
No 362
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.11 Score=53.58 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=75.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCcc--ccccccCC
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIA--ETSVTIPG 359 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~--e~Gvdip~ 359 (555)
...+||+.|+.=+-..+-..+.+. .+....+|.=-+...-.+.-+.|-.|...|++-|--+ =+--++.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e---------~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikG 622 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKE---------EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKG 622 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhh---------hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecc
Confidence 455899999999888888887765 3334333332233333344455677888999988643 34568889
Q ss_pred eEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-----CCEEEEccChhhH
Q 008735 360 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-----PGKCFRLYPENEF 417 (555)
Q Consensus 360 v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-----~G~~~~l~~~~~~ 417 (555)
|+-||- |.|.+ .|.--.+++.+.+|+.-.| .-.|-.||++-+-
T Consensus 623 Vk~vVf--------YqpP~-------~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 623 VKNVVF--------YQPPN-------NPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred eeeEEE--------ecCCC-------CcHHHHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 999997 55433 4677788999999985444 2468888877543
No 363
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.99 E-value=0.067 Score=59.19 Aligned_cols=77 Identities=27% Similarity=0.340 Sum_probs=55.0
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHH---HhccccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 33 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL---FHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 33 ~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i---~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
.....-...|+++-|.+++.. ....++|.|..|||||+.+..-+ +... ...+..|+++..++.++..+.+++..
T Consensus 187 ~~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~-~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 187 DFFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARG-QAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred HHHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhC-CCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 344444457899999998864 34567899999999996654433 2221 12345799999999999999999887
Q ss_pred HhC
Q 008735 110 ESG 112 (555)
Q Consensus 110 ~~~ 112 (555)
..+
T Consensus 264 ~lg 266 (684)
T PRK11054 264 RLG 266 (684)
T ss_pred hcC
Confidence 765
No 364
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.99 E-value=0.1 Score=54.43 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=18.5
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+++.||+|+|||+++..+...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999888766543
No 365
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=94.98 E-value=0.17 Score=52.17 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=25.0
Q ss_pred CCCCCceeEeec--ccccccchhHHHHHHHHHHH
Q 008735 143 YLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQN 174 (555)
Q Consensus 143 ~l~~~~~iIiDE--~He~~~~~d~ll~~l~~~~~ 174 (555)
++.+.+++|+|| +.....+.+.++..++++..
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~ 188 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAA 188 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 456789999999 56667778888888886654
No 366
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.085 Score=54.65 Aligned_cols=70 Identities=27% Similarity=0.510 Sum_probs=46.8
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 137 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~ 137 (555)
..+++.||.|||||+++..+.....+ .-|-++.|... +|+. ....-..+..
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~F----PFvKiiSpe~m--------------------iG~s-----EsaKc~~i~k 589 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDF----PFVKIISPEDM--------------------IGLS-----ESAKCAHIKK 589 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCC----CeEEEeChHHc--------------------cCcc-----HHHHHHHHHH
Confidence 37899999999999999888877654 35666666532 2211 0011122345
Q ss_pred hhcCCCCCCCceeEeeccc
Q 008735 138 ALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 138 ~~~~~~l~~~~~iIiDE~H 156 (555)
.+.|.+-+.+++||+|++.
T Consensus 590 ~F~DAYkS~lsiivvDdiE 608 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIE 608 (744)
T ss_pred HHHHhhcCcceEEEEcchh
Confidence 5666777889999999984
No 367
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.96 E-value=0.016 Score=47.52 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..++.+++.||+||||||++..+.
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3467899999999999999987764
No 368
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=94.96 E-value=0.057 Score=58.75 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=22.8
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 346 i~~G~~~aivG~sGsGKSTL~~ll~g 371 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTG 371 (547)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999877763
No 369
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.95 E-value=0.15 Score=49.48 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=24.5
Q ss_pred HHHHHHHHHh------cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 46 VEKRLVEEVR------KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 46 ~Q~~~i~~i~------~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.|+.++..+. ..-+.+..||+|+|||+.+..+..+
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHH
Confidence 4665555543 3458999999999999776555544
No 370
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.94 E-value=0.15 Score=48.62 Aligned_cols=44 Identities=23% Similarity=0.248 Sum_probs=30.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 97 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r 97 (555)
|..|..+.+.||+|+||||.+-++--......+..+|.-..|.+
T Consensus 47 IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~ 90 (325)
T COG4586 47 IPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR 90 (325)
T ss_pred cCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch
Confidence 45799999999999999999876653333333344555555665
No 371
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.93 E-value=0.2 Score=62.08 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=46.7
Q ss_pred CCCcHHHHHHHHHHHhc--CCeEEEEcCCCCchhhHHHHH---HHhccccCCCcEEEEeCccHHHHHHHH
Q 008735 40 SLPIASVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQF---LFHAGFCRDGKLIGVTQPRRVAAVTVA 104 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~--~~~~ii~apTGsGKT~~l~~~---i~~~~~~~~~~~i~~~~P~r~l~~~~~ 104 (555)
...+++-|++++..+.. ++.++|+|+.|+||||++... +... +...+..++.+.|+-.++..+.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~-~~~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQA-FESEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHH-HHhcCCeEEEEeChHHHHHHHH
Confidence 35679999999999875 478899999999999888322 2221 2234567888899987776554
No 372
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.89 E-value=0.058 Score=58.66 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++..+.-.
T Consensus 341 i~~G~~~~ivG~sGsGKSTL~~ll~g~ 367 (544)
T TIGR01842 341 LQAGEALAIIGPSGSGKSTLARLIVGI 367 (544)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998887644
No 373
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.84 E-value=0.021 Score=51.50 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=24.4
Q ss_pred HHHHHhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 50 LVEEVRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 50 ~i~~i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+--.+.+|+.+++.||+||||||++..+.
T Consensus 24 vsL~ia~ge~vv~lGpSGcGKTTLLnl~A 52 (259)
T COG4525 24 VSLTIASGELVVVLGPSGCGKTTLLNLIA 52 (259)
T ss_pred cceeecCCCEEEEEcCCCccHHHHHHHHh
Confidence 33456789999999999999999987776
No 374
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.82 E-value=0.045 Score=51.18 Aligned_cols=29 Identities=41% Similarity=0.581 Sum_probs=24.5
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+.+|+.+.|.||.||||||++..++-..
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 35689999999999999999998877544
No 375
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.82 E-value=0.1 Score=57.11 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=24.3
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+..|+.+.|+||+||||||++..+.-..
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999988877443
No 376
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=94.80 E-value=0.15 Score=55.81 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=24.0
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|+|++||||||++-.++-..
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4689999999999999999998877443
No 377
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.80 E-value=0.13 Score=52.60 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=22.4
Q ss_pred HHHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 51 VEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 51 i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
...+..++ .+++.||.|+||||++-.++...
T Consensus 29 ~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 29 SNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred HHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 34445554 36899999999998887776544
No 378
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.79 E-value=0.043 Score=55.71 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=26.5
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 95 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P 95 (555)
.+..++|+|||||||||++..++.... ...+.+++.+.-
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~-~~~~~~i~tiEd 159 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN-KNAAGHIITIED 159 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC-cCCCCEEEEEcC
Confidence 467999999999999998866554332 122345666543
No 379
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.75 E-value=0.15 Score=55.68 Aligned_cols=27 Identities=41% Similarity=0.566 Sum_probs=23.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g~ 364 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRH 364 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999998777643
No 380
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.74 E-value=0.097 Score=51.64 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=24.8
Q ss_pred HHHHHHhc----CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 49 RLVEEVRK----NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 49 ~~i~~i~~----~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
++.+.+.. .+.+.|.|+.|+|||+++..++..
T Consensus 7 ~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 7 KLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp HHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred HHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc
Confidence 44455544 568999999999999999887755
No 381
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.73 E-value=0.36 Score=45.74 Aligned_cols=31 Identities=35% Similarity=0.508 Sum_probs=23.1
Q ss_pred HHHHHhcCC-eEEEEcCCCCchhhHHHHHHHhc
Q 008735 50 LVEEVRKND-ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 50 ~i~~i~~~~-~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+-..+..|+ .+.++|+-|||||+... ++...
T Consensus 43 l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s 74 (269)
T COG3267 43 LHAAIADGQGILAVTGEVGSGKTVLRR-ALLAS 74 (269)
T ss_pred HHHHHhcCCceEEEEecCCCchhHHHH-HHHHh
Confidence 445566677 99999999999998777 44433
No 382
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.2 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=18.0
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++++||.|+||||++-.++...
T Consensus 38 a~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 34999999999998886665443
No 383
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.69 E-value=0.17 Score=53.21 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=24.9
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 95 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P 95 (555)
+.+++.||+|+|||+++..+...... .+..++++..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~--~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEeeH
Confidence 46899999999999877665543321 2456777653
No 384
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.68 E-value=0.019 Score=49.75 Aligned_cols=25 Identities=40% Similarity=0.697 Sum_probs=21.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|+|++||||||++..+.
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHT
T ss_pred EcCCCEEEEEccCCCccccceeeec
Confidence 3578999999999999999987655
No 385
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.67 E-value=0.064 Score=59.36 Aligned_cols=26 Identities=42% Similarity=0.666 Sum_probs=23.1
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
.+..|+.+.|+|+.||||||++-.+.
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~ 520 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLL 520 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHh
Confidence 35789999999999999999998776
No 386
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.67 E-value=0.051 Score=60.87 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=23.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+|++||||||++-.++-.
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl 502 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGF 502 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999887743
No 387
>PRK10436 hypothetical protein; Provisional
Probab=94.67 E-value=0.074 Score=55.90 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHH--hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 43 IASVEKRLVEEV--RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 43 ~~~~Q~~~i~~i--~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
..+.|.+.+..+ ..+..++|+|||||||||.+-.++.... .....++.+.
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~--~~~~~i~TiE 253 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLN--TAQINICSVE 253 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhC--CCCCEEEEec
Confidence 334455555544 3556899999999999988755444322 2234555554
No 388
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.64 E-value=0.07 Score=50.65 Aligned_cols=42 Identities=26% Similarity=0.176 Sum_probs=28.7
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhccccC----CCcEEEEeCcc
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFCR----DGKLIGVTQPR 96 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~----~~~~i~~~~P~ 96 (555)
..|+.+.|.||+|||||+++.+++....... .+..++++...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 4578999999999999988877776543221 12456665543
No 389
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.62 E-value=0.09 Score=51.83 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCchhhHHHHHH
Q 008735 57 NDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i 78 (555)
+.++++.||+|+|||+++..+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia 79 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMA 79 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHH
Confidence 3479999999999998774443
No 390
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=94.61 E-value=0.23 Score=54.32 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=23.8
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+..|+.+.|+|++||||||++-.+.-.
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999998877643
No 391
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.60 E-value=0.086 Score=52.48 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=31.3
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHH
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAV 101 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~ 101 (555)
..|..+.|.||+|||||+++.+++..... .+..++++-.......
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~--~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDP 97 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEcccchhHH
Confidence 45789999999999999888777766532 2455666655444333
No 392
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.60 E-value=0.15 Score=59.86 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=21.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+-|+|-||||||+++..+...
T Consensus 1163 I~p~eKVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054|consen 1163 IKPGEKVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred EcCCceEEEeCCCCCCHHHHHHHHHHh
Confidence 467899999999999999877555533
No 393
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.58 E-value=0.079 Score=50.75 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+++++.||+|-||||++..+..+.
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHh
Confidence 589999999999999886665444
No 394
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.57 E-value=0.18 Score=55.52 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=23.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|+|++||||||++-.+.-..
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4689999999999999999988776443
No 395
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.57 E-value=0.22 Score=54.18 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=21.3
Q ss_pred HHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 52 EEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 52 ~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..+.+++ -++++||.|+||||++..+....
T Consensus 30 ~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 30 NALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344443 46899999999998887665443
No 396
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.57 E-value=0.22 Score=54.17 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=23.3
Q ss_pred HHHHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 50 LVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 50 ~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+...+..|+ .++++||.|+|||+++..+....
T Consensus 36 L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 36 LTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 444455554 68999999999998887666543
No 397
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=94.56 E-value=0.069 Score=60.09 Aligned_cols=27 Identities=33% Similarity=0.424 Sum_probs=23.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++..++-.
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 467999999999999999999777643
No 398
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.55 E-value=0.053 Score=51.85 Aligned_cols=28 Identities=36% Similarity=0.440 Sum_probs=23.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|.||+|||||+++.+++...
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 3467899999999999998888887653
No 399
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.52 E-value=0.089 Score=56.20 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=22.8
Q ss_pred HHHHHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 49 RLVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 49 ~~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+...+.+++ -.+++||.|+|||+++..+....
T Consensus 27 ~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 27 ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 3344444543 46899999999998886666544
No 400
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.51 E-value=0.061 Score=56.54 Aligned_cols=90 Identities=18% Similarity=0.236 Sum_probs=49.9
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhh
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 134 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 134 (555)
..|..++|.|++|+|||+++.+++.... ..+.+++++.-.. ...++..+ +..++..... +- .. .. .....
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ee-s~~qi~~r-a~rlg~~~~~-l~--~~--~e-~~l~~ 147 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEE-SASQIKLR-AERLGLPSDN-LY--LL--AE-TNLEA 147 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccc-cHHHHHHH-HHHcCCChhc-EE--Ee--CC-CCHHH
Confidence 3467999999999999999988877654 2245666665332 23344333 2333332222 11 10 11 11122
Q ss_pred HHHhhcCCCCCCCceeEeecccc
Q 008735 135 IKEALLDPYLSRYSAIIVDEAHE 157 (555)
Q Consensus 135 i~~~~~~~~l~~~~~iIiDE~He 157 (555)
+...+. -.+.++||||+++.
T Consensus 148 i~~~i~---~~~~~lVVIDSIq~ 167 (446)
T PRK11823 148 ILATIE---EEKPDLVVIDSIQT 167 (446)
T ss_pred HHHHHH---hhCCCEEEEechhh
Confidence 222222 13678999999873
No 401
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.50 E-value=0.031 Score=47.15 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++|+|++||||||++..+....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999887776553
No 402
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.48 E-value=0.12 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++++.||+|+|||+++-.+...
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999888665543
No 403
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.46 E-value=0.041 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhHHHHHHHhc
Q 008735 60 LIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 60 ~ii~apTGsGKT~~l~~~i~~~ 81 (555)
++|.|+.|||||+.+..++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999887766553
No 404
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=94.46 E-value=0.2 Score=54.94 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++..+.-.
T Consensus 358 i~~G~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHccC
Confidence 468999999999999999999777643
No 405
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.44 E-value=0.22 Score=53.82 Aligned_cols=57 Identities=19% Similarity=0.013 Sum_probs=41.6
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhC
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 112 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~ 112 (555)
.+.+..++.+|=|.|||+.+..++...... .+..|+++.|....+.++.+++...+.
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~~La~f-~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILAAMISF-LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHHHHHHh-cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 456778889999999997776554432221 357899999999998888877655543
No 406
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.44 E-value=0.19 Score=56.42 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+|++||||||++-.+.-.
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~ 506 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRL 506 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998877644
No 407
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=94.42 E-value=0.044 Score=56.86 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=26.5
Q ss_pred HHHHHHHHHHH-------hcCCeEEEEcCCCCchhhHHH
Q 008735 44 ASVEKRLVEEV-------RKNDILIIVGETGSGKTTQLP 75 (555)
Q Consensus 44 ~~~Q~~~i~~i-------~~~~~~ii~apTGsGKT~~l~ 75 (555)
+++|.++...+ ..|+.+.++||+||||||++.
T Consensus 12 r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 12 RKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred hHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 46777665555 468999999999999999998
No 408
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.41 E-value=0.086 Score=53.88 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=29.0
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCc
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 95 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P 95 (555)
..|..+++.|++|+|||+++.+++..... .+..++++.-
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~--~g~~VlYvs~ 118 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAK--RGGKVLYVSG 118 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEC
Confidence 44689999999999999998888765532 2346766643
No 409
>PLN03232 ABC transporter C family member; Provisional
Probab=94.39 E-value=0.063 Score=65.22 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=23.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+|+|||||||++..+...
T Consensus 1259 I~~GekvaIVG~SGSGKSTL~~lL~rl 1285 (1495)
T PLN03232 1259 VSPSEKVGVVGRTGAGKSSMLNALFRI 1285 (1495)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998777643
No 410
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.38 E-value=0.12 Score=51.11 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=22.0
Q ss_pred HHhcCC--eEEEEcCCCCchhhHHHHHHHhc
Q 008735 53 EVRKND--ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 53 ~i~~~~--~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.|.+|+ .+|+.||.|+|||+++..++...
T Consensus 156 ~ieq~~ipSmIlWGppG~GKTtlArlia~ts 186 (554)
T KOG2028|consen 156 LIEQNRIPSMILWGPPGTGKTTLARLIASTS 186 (554)
T ss_pred HHHcCCCCceEEecCCCCchHHHHHHHHhhc
Confidence 345554 78999999999999887766443
No 411
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.36 E-value=0.073 Score=59.18 Aligned_cols=69 Identities=22% Similarity=0.218 Sum_probs=48.5
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccc--cCCCcEEEEeCccHHHHHHHHHHHHHHhC
Q 008735 42 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAEESG 112 (555)
Q Consensus 42 ~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~--~~~~~~i~~~~P~r~l~~~~~~~~~~~~~ 112 (555)
.+++-|++++.. .+..++|.|..|||||+.+-.-+..... .-....|+++..++.++..+.+++....+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 356788888875 3456788899999999554333322111 11245799999999999999999887655
No 412
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.2 Score=51.17 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=17.7
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+++|.|+||+|||..+...+.+
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~ 65 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEE 65 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHH
Confidence 36999999999999666555543
No 413
>PTZ00293 thymidine kinase; Provisional
Probab=94.32 E-value=0.036 Score=51.39 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=27.2
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCcc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 96 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~ 96 (555)
.|...++.||-+||||+.+...+..... .++.++++.|.
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~--ag~kv~~~kp~ 41 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTY--SEKKCVVIKYS 41 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHH--cCCceEEEEec
Confidence 4678899999999999866555544332 25566676665
No 414
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.31 E-value=0.036 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
|+.+++.||+||||||++..++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHcc
Confidence 578999999999999988777653
No 415
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.30 E-value=0.035 Score=48.86 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=24.9
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhcc
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHAG 82 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~~ 82 (555)
++..|+.+.|+||.||||||++.++.....
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 456899999999999999999877765543
No 416
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.27 E-value=0.031 Score=51.52 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=22.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999876653
No 417
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.034 Score=49.96 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=22.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|+||+||||||++..+.
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLRila 49 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLRILA 49 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHH
Confidence 5678999999999999999987765
No 418
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.25 E-value=0.48 Score=51.36 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=22.7
Q ss_pred HHHHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 50 LVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 50 ~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+...+.+|+ -+++.||.|+||||++-.++...
T Consensus 25 L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 25 LSSALDAGRINHAYLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334455554 36899999999998887766443
No 419
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.23 E-value=0.1 Score=52.68 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..+++.||+|+|||+++-.+....
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHh
Confidence 579999999999998886655443
No 420
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=94.21 E-value=0.37 Score=44.49 Aligned_cols=22 Identities=32% Similarity=0.609 Sum_probs=14.6
Q ss_pred eEEEEcCCCCchhhHHHHH-HHh
Q 008735 59 ILIIVGETGSGKTTQLPQF-LFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~-i~~ 80 (555)
..+++|..|||||+.+... +..
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~ 24 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIP 24 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-
T ss_pred EEEEEcCCCCcHhHHHHHHHHHH
Confidence 4689999999999776666 443
No 421
>PLN03130 ABC transporter C family member; Provisional
Probab=94.20 E-value=0.078 Score=64.71 Aligned_cols=99 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCc-----------------EEEEeCcc--------------------
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK-----------------LIGVTQPR-------------------- 96 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~-----------------~i~~~~P~-------------------- 96 (555)
+..|+.+.|+|+|||||||++..+........+.- ++.+++-.
T Consensus 1262 I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~td 1341 (1622)
T PLN03130 1262 ISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHND 1341 (1622)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCH
Q ss_pred ----HHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhHHHhhcCCCCCCCceeEeecc
Q 008735 97 ----RVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA 155 (555)
Q Consensus 97 ----r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~~~~~~~l~~~~~iIiDE~ 155 (555)
.++-......+-..+.......+| ......+...+.+..++.-.+++.+++|+||+
T Consensus 1342 eei~~Al~~a~l~~~I~~lp~GLdt~Vg---e~G~nLSgGQrQrlaLARALLr~p~ILILDEA 1401 (1622)
T PLN03130 1342 ADLWESLERAHLKDVIRRNSLGLDAEVS---EAGENFSVGQRQLLSLARALLRRSKILVLDEA 1401 (1622)
T ss_pred HHHHHHHHHcCcHHHHHhCccccCcccc---CCCCCCCHHHHHHHHHHHHHHcCCCEEEEECC
No 422
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=94.16 E-value=0.038 Score=50.12 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCcc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 96 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~ 96 (555)
|+..++.||-+||||+.+...+..... .+.+++++.|.
T Consensus 1 g~l~~i~GpM~sGKS~eLi~~~~~~~~--~~~~v~~~kp~ 38 (176)
T PF00265_consen 1 GKLEFITGPMFSGKSTELIRRIHRYEI--AGKKVLVFKPA 38 (176)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHHHH--TT-EEEEEEES
T ss_pred CEEEEEECCcCChhHHHHHHHHHHHHh--CCCeEEEEEec
Confidence 456789999999999877666644322 35678888776
No 423
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.15 E-value=0.78 Score=46.76 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=50.6
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 135 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 135 (555)
..+-+-+.|+.|+|||.++-.+...... ..+.++ .-..-...+.+++.+..+. . ..+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~-~~k~R~----HFh~Fm~~vh~~l~~~~~~--------------~----~~l 117 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI-KRKRRV----HFHEFMLDVHSRLHQLRGQ--------------D----DPL 117 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCc-cccccc----cccHHHHHHHHHHHHHhCC--------------C----ccH
Confidence 3578999999999999777666544432 223332 1223344555555443310 0 111
Q ss_pred HHhhcCCCCCCCceeEeecccccccchhHHHHHH
Q 008735 136 KEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLL 169 (555)
Q Consensus 136 ~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l 169 (555)
. ...+....+..++.+||.|-.++--..+++-+
T Consensus 118 ~-~va~~l~~~~~lLcfDEF~V~DiaDAmil~rL 150 (362)
T PF03969_consen 118 P-QVADELAKESRLLCFDEFQVTDIADAMILKRL 150 (362)
T ss_pred H-HHHHHHHhcCCEEEEeeeeccchhHHHHHHHH
Confidence 1 11233456688999999997666555555543
No 424
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.14 E-value=0.067 Score=52.13 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 45 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 45 ~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
...+.++..+..|..+++.||+|+|||+++..+..
T Consensus 9 ~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 9 RVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHH
Confidence 34456777788999999999999999988876654
No 425
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.12 E-value=0.15 Score=56.91 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=59.6
Q ss_pred HHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCc
Q 008735 274 FQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI 350 (555)
Q Consensus 274 ~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~ 350 (555)
..+.....++++++-+||..=+.++++.|.+...... .....+. |||.|+.++++.+++++.+|..+|+|+|+.
T Consensus 117 ~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 117 MSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG--SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC--Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 3334444467899999999999999999988765443 2344455 999999999999999999999999999984
No 426
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.11 E-value=0.041 Score=51.41 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=22.0
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..|+.++++||+||||||++..++..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 36889999999999999988777654
No 427
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.10 E-value=0.44 Score=49.33 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCchh-hHHHHHH
Q 008735 46 VEKRLVEEVRKNDILIIVGETGSGKT-TQLPQFL 78 (555)
Q Consensus 46 ~Q~~~i~~i~~~~~~ii~apTGsGKT-~~l~~~i 78 (555)
|-.++-.++..+.+.++..|+|+||| +++.+++
T Consensus 24 YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~ 57 (755)
T KOG1131|consen 24 YMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLII 57 (755)
T ss_pred HHHHHHHhhccCCcEEEECCCCCCcchHHHHHHH
Confidence 44566677788899999999999999 4444443
No 428
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.08 E-value=0.19 Score=51.63 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.3
Q ss_pred CCCCcHHHHHHHHHHHHHcCCccC
Q 008735 454 MEKPSRASIIKSLEQLFLLGALTD 477 (555)
Q Consensus 454 ~~~p~~~~~~~al~~L~~~g~l~~ 477 (555)
..|.....+...++.|+.+|+|+.
T Consensus 326 ~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 326 VDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEE
Confidence 356778889999999999999963
No 429
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.08 E-value=0.035 Score=52.44 Aligned_cols=27 Identities=37% Similarity=0.489 Sum_probs=23.0
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457999999999999999998777643
No 430
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.07 E-value=0.035 Score=51.88 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.0
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999999776543
No 431
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.04 E-value=0.44 Score=50.84 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=45.6
Q ss_pred HHHHHHHHHHh-----cC----CeEEEEcCCCCchhhHHHHHHHhcccc--CCCcEEEEeCccHHHHHHHHHHHHHHh
Q 008735 45 SVEKRLVEEVR-----KN----DILIIVGETGSGKTTQLPQFLFHAGFC--RDGKLIGVTQPRRVAAVTVAKRVAEES 111 (555)
Q Consensus 45 ~~Q~~~i~~i~-----~~----~~~ii~apTGsGKT~~l~~~i~~~~~~--~~~~~i~~~~P~r~l~~~~~~~~~~~~ 111 (555)
|+|+-++..+. .| +.+++.-|=|.|||+++..+.+...+. ..+..++++.+++.-+..+...+....
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 35666666655 12 356777789999998776665443332 236689999999998888777655544
No 432
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.04 E-value=0.065 Score=45.98 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=32.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHH
Q 008735 49 RLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99 (555)
Q Consensus 49 ~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l 99 (555)
.+...+..|..+++.|+.|+||||++..++...+.. --+..|+-.+
T Consensus 14 ~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~-----~~v~SPTf~l 59 (133)
T TIGR00150 14 AFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ-----GNVTSPTFTL 59 (133)
T ss_pred HHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC-----CcccCCCeee
Confidence 455556788999999999999999987777654321 1255666443
No 433
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.02 E-value=0.11 Score=57.77 Aligned_cols=74 Identities=15% Similarity=0.186 Sum_probs=61.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeE
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIK 361 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~ 361 (555)
++++||.+|++.-+.++.+.+++.+ +..+..+||+++..+|.+...+...|..+|+|+|.-+-. +.+.++.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~ 260 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLG 260 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCC
Confidence 5689999999999999999998764 456889999999999999998889999999999974432 4566777
Q ss_pred EEE
Q 008735 362 YVI 364 (555)
Q Consensus 362 ~VI 364 (555)
.||
T Consensus 261 liV 263 (679)
T PRK05580 261 LII 263 (679)
T ss_pred EEE
Confidence 766
No 434
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.00 E-value=0.038 Score=51.85 Aligned_cols=27 Identities=37% Similarity=0.541 Sum_probs=23.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++..+.-.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999777643
No 435
>PRK09354 recA recombinase A; Provisional
Probab=93.99 E-value=0.13 Score=51.63 Aligned_cols=45 Identities=22% Similarity=0.196 Sum_probs=31.9
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHH
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAV 101 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~ 101 (555)
..|..+.|.||+|||||++..+++..... .+..++++-....+-.
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~--~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDP 102 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchHH
Confidence 35789999999999999888887766532 2456666665544443
No 436
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.99 E-value=0.046 Score=50.26 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
|+.++|+||+||||||++..+...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 678999999999999999777543
No 437
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=93.97 E-value=0.093 Score=58.29 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++..+.-.
T Consensus 475 i~~Ge~~~IvG~nGsGKSTLl~lL~Gl 501 (659)
T TIGR00954 475 VPSGNHLLICGPNGCGKSSLFRILGEL 501 (659)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998776643
No 438
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.22 Score=54.40 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=22.9
Q ss_pred HHHHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 50 LVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 50 ~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+...+.+|+ ..++.||.|+||||++-.+....
T Consensus 28 L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 28 IQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 334455554 48899999999998886665443
No 439
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=93.97 E-value=0.22 Score=51.03 Aligned_cols=26 Identities=31% Similarity=0.370 Sum_probs=22.0
Q ss_pred HHHhcCCeEEEEcCCCCchhhHHHHH
Q 008735 52 EEVRKNDILIIVGETGSGKTTQLPQF 77 (555)
Q Consensus 52 ~~i~~~~~~ii~apTGsGKT~~l~~~ 77 (555)
+.+.++.|++..||+|+|||+++..+
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l 229 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNL 229 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHH
Confidence 66788999999999999999776543
No 440
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=93.95 E-value=0.052 Score=57.25 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=22.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+-++|++||||||+.-.++-
T Consensus 314 l~~GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 314 LREGETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999877763
No 441
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.90 E-value=0.04 Score=51.84 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=22.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998777643
No 442
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.90 E-value=0.041 Score=51.83 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=23.0
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.+.||+||||||++-.++-.
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999776643
No 443
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.88 E-value=0.041 Score=52.59 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998777643
No 444
>PLN03232 ABC transporter C family member; Provisional
Probab=93.88 E-value=0.13 Score=62.61 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=55.6
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCC-----CcEEEEeCccHHH----H-----------HHHHHHHHHHhC-
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----GKLIGVTQPRRVA----A-----------VTVAKRVAEESG- 112 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~-----~~~i~~~~P~r~l----~-----------~~~~~~~~~~~~- 112 (555)
+..|+.+.|+||+||||||++..++-+.....+ ...+.+++-.--+ + .+....+.+..+
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L 719 (1495)
T PLN03232 640 IPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTAL 719 (1495)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 468999999999999999999888765443322 1223333211000 0 011111111111
Q ss_pred ------CccC--CEEEEEEecCCCCCchhhHHHhhcCCCCCCCceeEeecc
Q 008735 113 ------VELG--QRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA 155 (555)
Q Consensus 113 ------~~~~--~~vg~~~~~~~~~~~~~~i~~~~~~~~l~~~~~iIiDE~ 155 (555)
..-| ..+| ......+...+.+..++.-.+++.+++++||+
T Consensus 720 ~~di~~Lp~Gd~T~IG---e~G~~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 720 QHDLDLLPGRDLTEIG---ERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred HHHHHhCCCCCCceec---CCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1111 1222 11234566777777777788889999999996
No 445
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=93.87 E-value=0.1 Score=63.64 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+|+|||||||++..+...
T Consensus 1309 I~~GekiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999988777643
No 446
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.86 E-value=0.04 Score=51.76 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=22.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|.||+||||||++-.+.-.
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998777643
No 447
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.86 E-value=0.86 Score=44.94 Aligned_cols=96 Identities=23% Similarity=0.244 Sum_probs=49.9
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEe------CccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCC
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT------QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRT 129 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~------~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~ 129 (555)
+++.++++||-|||||+++.-.+.+. ...+...+++ +..+.+...+...++.+.... ....| +..
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~--q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~g------sft 118 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDI--QENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFG------SFT 118 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhH--HhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeec------ccc
Confidence 45789999999999998887777662 1112222222 223444445555554444321 22222 222
Q ss_pred CchhhHHHhhcC-CCCCCC-ceeEeeccccccc
Q 008735 130 STSTRIKEALLD-PYLSRY-SAIIVDEAHERTV 160 (555)
Q Consensus 130 ~~~~~i~~~~~~-~~l~~~-~~iIiDE~He~~~ 160 (555)
..-+++...+.. ...... -++|+||++....
T Consensus 119 e~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~ 151 (408)
T KOG2228|consen 119 ENLSKLLEALKKGDETTSGKVIFILDEFDLFAP 151 (408)
T ss_pred hhHHHHHHHHhcCCCCCCceEEEEeehhhcccc
Confidence 333444444432 223333 4667888864333
No 448
>CHL00176 ftsH cell division protein; Validated
Probab=93.85 E-value=0.25 Score=54.21 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+.+++.||+|+|||+++..+..+.
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999998887665543
No 449
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.85 E-value=0.042 Score=51.71 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=22.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999877653
No 450
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=93.84 E-value=0.019 Score=57.41 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHH
Q 008735 31 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQF 77 (555)
Q Consensus 31 ~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~ 77 (555)
+-.+.++.-.+-|+.+|.++|+.|..|.+++..|.|||||| +.+|.+
T Consensus 13 l~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpil 61 (725)
T KOG0349|consen 13 LGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 61 (725)
T ss_pred hhhhhhhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhH
Confidence 44455667778889999999999999999999999999999 455443
No 451
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.84 E-value=0.11 Score=51.81 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=27.1
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhcccc----CCCcEEEEeC
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFC----RDGKLIGVTQ 94 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~----~~~~~i~~~~ 94 (555)
.|..+.|.||+|||||++..+++...... ..+..++++-
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 35799999999999998887776543321 1234666665
No 452
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.83 E-value=0.3 Score=54.39 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++++.||+|+||||++..+...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999888666543
No 453
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.82 E-value=0.11 Score=55.20 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHhc--CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 43 IASVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 43 ~~~~Q~~~i~~i~~--~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
..+.+.+.+..+.. +..++|+|||||||||.+-.++.... ..+..++.+.
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~--~~~~~iiTiE 277 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLN--TPERNILTVE 277 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccC--CCCCcEEEEc
Confidence 34455555555433 34789999999999988865544332 2233455543
No 454
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.82 E-value=0.043 Score=51.63 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=22.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999998766543
No 455
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.81 E-value=0.042 Score=51.38 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=23.0
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998777643
No 456
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.80 E-value=0.08 Score=55.17 Aligned_cols=28 Identities=29% Similarity=0.577 Sum_probs=23.6
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGF 83 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~ 83 (555)
.++.++++||+||||||.+..+..+.++
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~ 136 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGY 136 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence 4579999999999999999888776654
No 457
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.056 Score=50.19 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=23.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhcc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAG 82 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~ 82 (555)
+..|+...|.||+||||||+.-.++=...
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46789999999999999999877764443
No 458
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.79 E-value=0.065 Score=48.27 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=25.6
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhcc
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHAG 82 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~~ 82 (555)
.+..|..+.++||.|+||||++-++..+..
T Consensus 24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred eecCceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 356899999999999999999988876654
No 459
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.78 E-value=0.042 Score=51.78 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998777643
No 460
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.78 E-value=0.35 Score=55.45 Aligned_cols=78 Identities=12% Similarity=0.178 Sum_probs=66.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecC-ccccccccCCe
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-IAETSVTIPGI 360 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-~~e~Gvdip~v 360 (555)
+.+++|.+||+.-|.+.++.+.+.+... ++.+..++|+.+..++.++.+.+++|+.+|||+|. ++...+.+.++
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~-----~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L 574 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANF-----PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDL 574 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccC-----CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccC
Confidence 5789999999999999999988875432 56788899999999999999999999999999997 44456778888
Q ss_pred EEEE
Q 008735 361 KYVI 364 (555)
Q Consensus 361 ~~VI 364 (555)
.+||
T Consensus 575 ~llV 578 (926)
T TIGR00580 575 GLLI 578 (926)
T ss_pred CEEE
Confidence 8877
No 461
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.77 E-value=0.059 Score=46.93 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++++||+||||||++..+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 37899999999999998876554
No 462
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.76 E-value=0.072 Score=45.00 Aligned_cols=36 Identities=28% Similarity=0.542 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcc
Q 008735 47 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 82 (555)
Q Consensus 47 Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~ 82 (555)
-+.+...+..|..+++.|+-||||||++..++...+
T Consensus 5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 5 AKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp HHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 355667788899999999999999999877766553
No 463
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.74 E-value=0.045 Score=51.77 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=22.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|.||+||||||++-.+.-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999977653
No 464
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.72 E-value=0.43 Score=51.34 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=23.0
Q ss_pred HHHHHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 49 RLVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 49 ~~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+...+..++ -+++.||.|+||||++-.+....
T Consensus 27 ~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 27 ALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344455553 46899999999998887766543
No 465
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.71 E-value=0.044 Score=52.44 Aligned_cols=27 Identities=44% Similarity=0.667 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998777643
No 466
>PF12846 AAA_10: AAA-like domain
Probab=93.70 E-value=0.066 Score=53.11 Aligned_cols=42 Identities=33% Similarity=0.393 Sum_probs=29.3
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHH
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAA 100 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~ 100 (555)
+.+++|+|+||||||+++..++..... .+..++++-|.....
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~--~g~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIR--RGPRVVIFDPKGDYS 42 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH--cCCCEEEEcCCchHH
Confidence 468999999999999888766644432 245677776664443
No 467
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.70 E-value=0.047 Score=50.58 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=23.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|+|++||||||++-.+.-..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999987776543
No 468
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.69 E-value=0.11 Score=52.16 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=22.6
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..|..+.|.||+|||||+++.+++...
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 346899999999999998888887654
No 469
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.69 E-value=0.043 Score=51.64 Aligned_cols=26 Identities=42% Similarity=0.638 Sum_probs=22.6
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++..+.-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 56899999999999999999877653
No 470
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.68 E-value=0.077 Score=49.47 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=19.3
Q ss_pred cCCeEEEEcCCCCchhhHHHHHH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i 78 (555)
.++.++++||+|+||||++..+.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 56889999999999998776554
No 471
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.68 E-value=0.43 Score=52.75 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCcc-ccccccCCe
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIA-ETSVTIPGI 360 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~-e~Gvdip~v 360 (555)
+.+++|-+||+.=+++.++.+.+.+... ++.+..+||+++..+|..+++...+|...|||+|..+ ...+.+.++
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~-----gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l 358 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPL-----GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRL 358 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhccc-----CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcccccccc
Confidence 6689999999999999998888765432 6789999999999999999999999999999999743 445777888
Q ss_pred EEEE
Q 008735 361 KYVI 364 (555)
Q Consensus 361 ~~VI 364 (555)
.+||
T Consensus 359 ~lvV 362 (630)
T TIGR00643 359 ALVI 362 (630)
T ss_pred ceEE
Confidence 8887
No 472
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.65 E-value=0.15 Score=54.37 Aligned_cols=38 Identities=29% Similarity=0.373 Sum_probs=29.2
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
..|..++|.||+|+|||++..+++..... ++.+++++.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~--~ge~~~y~s 298 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACA--NKERAILFA 298 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEE
Confidence 35689999999999999999999877643 344555554
No 473
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.65 E-value=0.05 Score=49.92 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=23.2
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+.+++++.+.||+||||||++..+-..
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHhh
Confidence 3568899999999999999998766543
No 474
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.65 E-value=0.047 Score=51.35 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=23.0
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|.||+||||||++-.+.-.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998776643
No 475
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.63 E-value=0.043 Score=51.90 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999977653
No 476
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.63 E-value=0.34 Score=53.14 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=22.7
Q ss_pred HHHHHhcC---CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 50 LVEEVRKN---DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 50 ~i~~i~~~---~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+...+..+ ..+++.||.|+|||+++..++...
T Consensus 28 L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 28 LKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred HHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 33444555 356999999999998887666544
No 477
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.63 E-value=0.14 Score=54.85 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=61.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeE
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIK 361 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~ 361 (555)
++++||.+|+..-+.++++.+++.+ +..+..+||+++..+|.++.....+|..+|||+|..+-. ..++++.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f--------~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~ 95 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF--------GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLG 95 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCC
Confidence 6689999999999999999998865 345778899999999999998888999999999975432 3566777
Q ss_pred EEE
Q 008735 362 YVI 364 (555)
Q Consensus 362 ~VI 364 (555)
.||
T Consensus 96 lII 98 (505)
T TIGR00595 96 LII 98 (505)
T ss_pred EEE
Confidence 766
No 478
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.63 E-value=0.044 Score=51.89 Aligned_cols=26 Identities=35% Similarity=0.601 Sum_probs=22.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999876653
No 479
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.62 E-value=0.97 Score=50.59 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=15.7
Q ss_pred eEEEEcCCCCchhhHHHHHH
Q 008735 59 ILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i 78 (555)
.+.|.|+||+|||.++-.++
T Consensus 783 vLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 34699999999997666554
No 480
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.05 Score=52.80 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCCchhhHHHHHH
Q 008735 57 NDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i 78 (555)
..|++++||||||||.++..++
T Consensus 97 KSNILLiGPTGsGKTlLAqTLA 118 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLA 118 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHH
Confidence 3589999999999996664443
No 481
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.62 E-value=0.44 Score=48.43 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCC---eEEEEcCCCCchhhHHHHHHHh
Q 008735 47 EKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 47 Q~~~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+.+...+.+|+ -++++||.|+|||+++-.++..
T Consensus 32 ~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~ 68 (351)
T PRK09112 32 EAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANH 68 (351)
T ss_pred HHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHH
Confidence 345566677776 5899999999999887665543
No 482
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.62 E-value=0.048 Score=52.47 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=22.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999876653
No 483
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.62 E-value=0.049 Score=51.74 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=22.8
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457999999999999999998776543
No 484
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.59 E-value=0.092 Score=46.87 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=21.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..++.+.++|.+||||||++.++.
T Consensus 36 L~~~QTlaiIG~NGSGKSTLakMla 60 (267)
T COG4167 36 LREGQTLAIIGENGSGKSTLAKMLA 60 (267)
T ss_pred ecCCcEEEEEccCCCcHhHHHHHHh
Confidence 3578999999999999999987665
No 485
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.58 E-value=0.049 Score=51.04 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=23.0
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|.||+||||||++-.+.-.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999777643
No 486
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.56 E-value=0.05 Score=50.93 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998776644
No 487
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.55 E-value=0.49 Score=43.44 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=23.0
Q ss_pred HHHHHhcC---CeEEEEcCCCCchhhHHHHHHHh
Q 008735 50 LVEEVRKN---DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 50 ~i~~i~~~---~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+...+.++ ..+++.||.|+|||+++-.++..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~ 37 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKA 37 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44556666 35889999999999877666544
No 488
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.54 E-value=0.062 Score=48.98 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
|+.++|+||+||||||++..+...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999998766554
No 489
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.53 E-value=0.048 Score=52.21 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=22.6
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|.||+||||||++-.+.-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcC
Confidence 56899999999999999999877653
No 490
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.52 E-value=0.05 Score=51.70 Aligned_cols=27 Identities=41% Similarity=0.562 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|.||+||||||++-.+.-.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998777644
No 491
>PF13871 Helicase_C_4: Helicase_C-like
Probab=93.51 E-value=0.075 Score=51.46 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=49.1
Q ss_pred hhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC
Q 008735 332 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 404 (555)
Q Consensus 332 ~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~ 404 (555)
...+.|.+|+..|+|.|+.+++||.+.+-.-+-| ...+.......|.|...++|..||+.|.+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~n----------qr~Rv~i~le~pwsad~aiQ~~GR~hRsn 114 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKN----------QRRRVHITLELPWSADKAIQQFGRTHRSN 114 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCC----------CCceEEEEeeCCCCHHHHHHHhccccccc
Confidence 3456789999999999999999999986555554 12222234557999999999999999998
No 492
>PRK13764 ATPase; Provisional
Probab=93.51 E-value=0.12 Score=55.76 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=28.8
Q ss_pred HHHHH-hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCcc
Q 008735 50 LVEEV-RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 96 (555)
Q Consensus 50 ~i~~i-~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~ 96 (555)
+++.+ ..+++++|+|||||||||++..++.... ..+..+..+.-.
T Consensus 249 l~~~l~~~~~~ILIsG~TGSGKTTll~AL~~~i~--~~~riV~TiEDp 294 (602)
T PRK13764 249 LKERLEERAEGILIAGAPGAGKSTFAQALAEFYA--DMGKIVKTMESP 294 (602)
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHh--hCCCEEEEECCC
Confidence 33444 4578899999999999998866554332 234445455433
No 493
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.51 E-value=0.052 Score=51.01 Aligned_cols=27 Identities=37% Similarity=0.678 Sum_probs=22.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.++||+||||||++-.+.-.
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999988777643
No 494
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.50 E-value=0.052 Score=51.32 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=23.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998777644
No 495
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.49 E-value=0.052 Score=51.66 Aligned_cols=27 Identities=33% Similarity=0.593 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999998777644
No 496
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.48 E-value=0.052 Score=51.39 Aligned_cols=27 Identities=41% Similarity=0.518 Sum_probs=23.0
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998777644
No 497
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.46 E-value=0.99 Score=46.18 Aligned_cols=99 Identities=25% Similarity=0.270 Sum_probs=58.5
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 137 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~ 137 (555)
.+++.+|=-||||||.+.-+.........+..++.+-..|.+|..+.+.+++..+..+-. . .....+-.....
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~-----~--~~~~~Pv~Iak~ 173 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG-----S--GTEKDPVEIAKA 173 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceec-----C--CCCCCHHHHHHH
Confidence 467889999999998766655443322223334445577889988888888766644211 1 111112222233
Q ss_pred hhcCCCCCCCceeEeecccccccchh
Q 008735 138 ALLDPYLSRYSAIIVDEAHERTVHTD 163 (555)
Q Consensus 138 ~~~~~~l~~~~~iIiDE~He~~~~~d 163 (555)
.+..-....++++|+|=|-....+.+
T Consensus 174 al~~ak~~~~DvvIvDTAGRl~ide~ 199 (451)
T COG0541 174 ALEKAKEEGYDVVIVDTAGRLHIDEE 199 (451)
T ss_pred HHHHHHHcCCCEEEEeCCCcccccHH
Confidence 33333345689999999865454443
No 498
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=93.45 E-value=0.13 Score=62.09 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=24.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|+|||||||||++-+++...
T Consensus 1191 i~~G~~vAIVG~SGsGKSTl~~LL~r~y 1218 (1466)
T PTZ00265 1191 CDSKKTTAIVGETGSGKSTVMSLLMRFY 1218 (1466)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999999999988877543
No 499
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.43 E-value=0.057 Score=52.05 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=22.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|.||+||||||++-.+.-.
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999776543
No 500
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.43 E-value=0.053 Score=52.16 Aligned_cols=27 Identities=41% Similarity=0.554 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998776543
Done!