Query 008735
Match_columns 555
No_of_seqs 350 out of 3142
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 10:31:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 2E-75 6.7E-80 647.1 49.3 489 21-553 72-579 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 3E-53 1E-57 472.1 22.7 461 23-538 10-555 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 3.5E-52 1.2E-56 462.1 26.2 444 28-532 11-529 (702)
4 2zj8_A DNA helicase, putative 100.0 3.4E-51 1.2E-55 455.4 18.9 452 28-538 9-540 (720)
5 4f92_B U5 small nuclear ribonu 100.0 5.9E-43 2E-47 413.0 33.6 498 9-554 889-1488(1724)
6 4f92_B U5 small nuclear ribonu 100.0 5E-41 1.7E-45 396.6 30.4 447 39-535 76-635 (1724)
7 2db3_A ATP-dependent RNA helic 100.0 7.9E-40 2.7E-44 342.6 27.9 321 22-415 57-407 (434)
8 3fht_A ATP-dependent RNA helic 100.0 1.7E-39 5.8E-44 338.1 28.2 339 13-416 17-380 (412)
9 3eiq_A Eukaryotic initiation f 100.0 1.6E-40 5.6E-45 346.2 17.0 325 22-419 41-391 (414)
10 3pey_A ATP-dependent RNA helic 100.0 1.9E-38 6.6E-43 328.1 30.0 330 21-416 5-357 (395)
11 2i4i_A ATP-dependent RNA helic 100.0 4.9E-39 1.7E-43 335.3 25.3 328 22-419 16-387 (417)
12 2v1x_A ATP-dependent DNA helic 100.0 2.2E-38 7.4E-43 341.5 30.2 338 5-419 5-378 (591)
13 2j0s_A ATP-dependent RNA helic 100.0 5.3E-39 1.8E-43 334.4 23.5 318 28-418 45-386 (410)
14 1hv8_A Putative ATP-dependent 100.0 1.7E-38 5.9E-43 325.1 26.8 322 22-419 7-349 (367)
15 1xti_A Probable ATP-dependent 100.0 3.8E-38 1.3E-42 325.7 27.1 327 19-417 6-359 (391)
16 1s2m_A Putative ATP-dependent 100.0 3.4E-38 1.2E-42 327.2 25.8 325 21-419 21-369 (400)
17 3fmp_B ATP-dependent RNA helic 100.0 3.5E-39 1.2E-43 342.6 18.1 332 20-416 91-447 (479)
18 1oyw_A RECQ helicase, ATP-depe 100.0 3.3E-37 1.1E-41 329.0 27.2 312 22-419 3-347 (523)
19 3i5x_A ATP-dependent RNA helic 100.0 2.3E-37 7.9E-42 335.3 25.7 329 28-418 80-452 (563)
20 3l9o_A ATP-dependent RNA helic 100.0 7.4E-39 2.5E-43 366.1 14.2 322 35-415 177-597 (1108)
21 1fuu_A Yeast initiation factor 100.0 3E-38 1E-42 326.8 14.5 320 28-420 29-371 (394)
22 3sqw_A ATP-dependent RNA helic 100.0 5.7E-37 1.9E-41 332.8 25.2 330 27-418 28-401 (579)
23 3o8b_A HCV NS3 protease/helica 100.0 5.4E-38 1.8E-42 336.3 15.2 301 33-418 208-517 (666)
24 4a4z_A Antiviral helicase SKI2 100.0 3.1E-38 1.1E-42 358.0 12.8 320 37-413 34-490 (997)
25 2z0m_A 337AA long hypothetical 100.0 2.3E-36 7.7E-41 305.7 23.6 301 28-413 2-321 (337)
26 2xgj_A ATP-dependent RNA helic 100.0 2.7E-37 9.1E-42 350.4 18.3 325 36-415 80-499 (1010)
27 2jlq_A Serine protease subunit 100.0 2.4E-37 8E-42 324.7 13.2 290 42-413 4-309 (451)
28 2z83_A Helicase/nucleoside tri 100.0 1.2E-36 4.1E-41 319.9 17.9 287 48-415 12-313 (459)
29 3oiy_A Reverse gyrase helicase 100.0 6.3E-36 2.1E-40 311.7 19.4 311 30-414 9-364 (414)
30 3fho_A ATP-dependent RNA helic 100.0 3.3E-37 1.1E-41 328.9 9.8 321 30-415 129-470 (508)
31 2whx_A Serine protease/ntpase/ 100.0 1.7E-36 5.7E-41 327.8 14.2 292 38-413 170-476 (618)
32 3rc3_A ATP-dependent RNA helic 100.0 9E-37 3.1E-41 330.8 11.3 310 54-444 152-476 (677)
33 1yks_A Genome polyprotein [con 100.0 1.1E-35 3.8E-40 310.6 17.5 280 53-413 4-297 (440)
34 2ykg_A Probable ATP-dependent 100.0 3.5E-36 1.2E-40 334.3 13.7 136 281-440 397-551 (696)
35 2wv9_A Flavivirin protease NS2 100.0 3.4E-35 1.2E-39 319.4 14.7 291 42-413 215-531 (673)
36 2v6i_A RNA helicase; membrane, 100.0 1.6E-34 5.4E-39 301.3 18.5 275 56-412 1-287 (431)
37 4a2p_A RIG-I, retinoic acid in 100.0 3.8E-34 1.3E-38 309.6 19.5 120 280-418 388-511 (556)
38 1wp9_A ATP-dependent RNA helic 100.0 4E-33 1.4E-37 295.8 20.9 112 280-418 359-478 (494)
39 3tbk_A RIG-I helicase domain; 100.0 8.4E-34 2.9E-38 306.7 14.6 120 280-418 387-510 (555)
40 4a2q_A RIG-I, retinoic acid in 100.0 4.6E-33 1.6E-37 312.6 20.0 119 280-417 629-751 (797)
41 2eyq_A TRCF, transcription-rep 100.0 6.2E-32 2.1E-36 310.9 27.9 305 31-415 592-922 (1151)
42 1gm5_A RECG; helicase, replica 100.0 1.1E-32 3.8E-37 303.3 16.2 303 29-413 356-695 (780)
43 4a2w_A RIG-I, retinoic acid in 100.0 1.1E-31 3.7E-36 304.7 21.4 119 280-417 629-751 (936)
44 4ddu_A Reverse gyrase; topoiso 100.0 1.2E-31 4E-36 306.7 20.9 283 32-370 68-388 (1104)
45 4gl2_A Interferon-induced heli 100.0 4.7E-33 1.6E-37 309.3 8.9 110 282-413 400-517 (699)
46 2fwr_A DNA repair protein RAD2 100.0 6.9E-31 2.4E-35 278.3 8.8 288 41-415 92-454 (472)
47 1gku_B Reverse gyrase, TOP-RG; 100.0 4.1E-30 1.4E-34 294.1 14.2 277 31-369 46-352 (1054)
48 2oca_A DAR protein, ATP-depend 100.0 2.7E-30 9.2E-35 276.4 9.6 297 40-413 111-453 (510)
49 1tf5_A Preprotein translocase 100.0 1.1E-27 3.6E-32 258.8 25.0 164 221-416 369-546 (844)
50 3h1t_A Type I site-specific re 100.0 7.8E-28 2.7E-32 261.7 17.3 299 41-405 177-545 (590)
51 2fsf_A Preprotein translocase 99.9 2.1E-26 7.2E-31 248.0 23.7 163 221-416 378-584 (853)
52 3eaq_A Heat resistant RNA depe 99.9 3.1E-27 1E-31 222.1 9.1 169 274-469 23-211 (212)
53 1nkt_A Preprotein translocase 99.9 8.8E-26 3E-30 243.4 21.1 340 37-415 106-617 (922)
54 3dmq_A RNA polymerase-associat 99.9 2E-25 6.8E-30 253.7 14.5 119 270-414 491-614 (968)
55 3i32_A Heat resistant RNA depe 99.9 2.8E-26 9.6E-31 225.6 5.8 189 255-474 5-213 (300)
56 1c4o_A DNA nucleotide excision 99.9 3.9E-22 1.3E-26 217.7 27.2 167 219-415 380-550 (664)
57 3llm_A ATP-dependent RNA helic 99.9 4.8E-23 1.6E-27 197.0 17.1 172 33-246 52-235 (235)
58 3jux_A Protein translocase sub 99.9 2.6E-22 8.9E-27 212.0 24.0 164 221-416 411-588 (822)
59 1z63_A Helicase of the SNF2/RA 99.9 1.8E-23 6.2E-28 222.9 13.2 111 281-417 340-455 (500)
60 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 4.2E-22 1.4E-26 224.8 19.3 306 41-413 270-707 (1038)
61 2rb4_A ATP-dependent RNA helic 99.9 3.4E-22 1.2E-26 182.0 12.0 129 269-418 21-150 (175)
62 2hjv_A ATP-dependent RNA helic 99.9 4E-22 1.4E-26 179.2 11.4 135 253-418 10-145 (163)
63 1z3i_X Similar to RAD54-like; 99.9 1.1E-20 3.9E-25 206.3 24.2 111 280-417 414-530 (644)
64 1fuk_A Eukaryotic initiation f 99.9 5.2E-22 1.8E-26 178.9 8.8 117 275-418 23-140 (165)
65 1t5i_A C_terminal domain of A 99.9 9.2E-22 3.1E-26 178.3 10.3 132 253-415 6-138 (172)
66 2jgn_A DBX, DDX3, ATP-dependen 99.8 1.6E-21 5.4E-26 178.9 10.1 136 253-418 20-156 (185)
67 2p6n_A ATP-dependent RNA helic 99.8 2.1E-21 7.3E-26 178.8 10.0 115 273-415 46-161 (191)
68 2d7d_A Uvrabc system protein B 99.8 1E-19 3.5E-24 198.6 19.7 168 218-415 385-556 (661)
69 3mwy_W Chromo domain-containin 99.8 3.3E-20 1.1E-24 207.7 15.4 111 281-418 571-687 (800)
70 2yjt_D ATP-dependent RNA helic 99.7 4.8E-22 1.6E-26 180.0 0.0 119 274-419 22-141 (170)
71 3iuy_A Probable ATP-dependent 99.8 4E-18 1.4E-22 162.0 14.0 169 28-240 28-222 (228)
72 2oxc_A Probable ATP-dependent 99.8 4.5E-18 1.5E-22 161.8 14.2 178 22-241 25-223 (230)
73 3fe2_A Probable ATP-dependent 99.8 6.6E-18 2.3E-22 162.0 14.9 183 21-246 29-237 (242)
74 3fmo_B ATP-dependent RNA helic 99.8 8.2E-18 2.8E-22 166.3 15.3 186 19-246 90-297 (300)
75 1q0u_A Bstdead; DEAD protein, 99.7 3.2E-18 1.1E-22 161.6 11.2 177 28-246 12-211 (219)
76 2pl3_A Probable ATP-dependent 99.7 5.9E-18 2E-22 161.7 13.2 183 22-247 26-233 (236)
77 3ber_A Probable ATP-dependent 99.7 8.6E-18 2.9E-22 161.8 14.1 181 21-244 43-245 (249)
78 3bor_A Human initiation factor 99.7 1.5E-17 5.3E-22 158.9 15.0 177 22-241 31-229 (237)
79 1qde_A EIF4A, translation init 99.7 2.6E-17 8.9E-22 155.8 16.4 183 23-248 16-218 (224)
80 1vec_A ATP-dependent RNA helic 99.7 2.1E-17 7.2E-22 154.3 15.5 135 23-157 5-157 (206)
81 1t6n_A Probable ATP-dependent 99.7 8.7E-17 3E-21 151.8 19.0 138 21-158 14-170 (220)
82 3ly5_A ATP-dependent RNA helic 99.7 9.1E-18 3.1E-22 162.9 12.4 168 27-237 61-252 (262)
83 2gxq_A Heat resistant RNA depe 99.7 3.2E-17 1.1E-21 153.1 15.4 172 28-244 9-203 (207)
84 3dkp_A Probable ATP-dependent 99.7 4.2E-17 1.4E-21 156.7 15.0 130 28-158 37-187 (245)
85 3i4u_A ATP-dependent RNA helic 99.7 8E-18 2.7E-22 161.8 9.8 103 449-554 6-109 (270)
86 1wrb_A DJVLGB; RNA helicase, D 99.7 8.3E-17 2.8E-21 155.4 12.6 180 28-246 31-239 (253)
87 2ipc_A Preprotein translocase 99.6 8.2E-14 2.8E-18 150.3 21.0 118 35-157 72-213 (997)
88 3b6e_A Interferon-induced heli 99.5 2.1E-14 7E-19 134.7 9.4 128 30-159 21-175 (216)
89 2vl7_A XPD; helicase, unknown 99.5 4E-14 1.4E-18 151.3 12.9 127 268-411 371-518 (540)
90 1z5z_A Helicase of the SNF2/RA 99.5 1.9E-14 6.4E-19 139.6 6.5 111 281-417 111-226 (271)
91 2fz4_A DNA repair protein RAD2 99.4 6.7E-13 2.3E-17 126.3 9.2 108 41-158 92-204 (237)
92 1rif_A DAR protein, DNA helica 99.4 4.2E-13 1.4E-17 131.5 7.7 117 41-159 112-238 (282)
93 3crv_A XPD/RAD3 related DNA he 99.3 2E-10 6.9E-15 123.0 21.0 174 220-411 316-528 (551)
94 1w36_D RECD, exodeoxyribonucle 98.2 2.4E-06 8.2E-11 92.2 9.4 65 44-108 151-217 (608)
95 3e1s_A Exodeoxyribonuclease V, 97.7 0.0001 3.6E-09 78.6 10.3 65 40-106 187-251 (574)
96 3upu_A ATP-dependent DNA helic 97.7 0.00014 4.9E-09 75.7 10.8 72 35-107 18-94 (459)
97 4a15_A XPD helicase, ATP-depen 97.6 7E-05 2.4E-09 80.9 7.5 175 220-411 376-581 (620)
98 4a15_A XPD helicase, ATP-depen 97.4 0.0002 6.8E-09 77.3 7.0 66 42-110 3-74 (620)
99 2orw_A Thymidine kinase; TMTK, 97.3 0.00057 1.9E-08 61.5 8.5 40 56-97 2-41 (184)
100 2o0j_A Terminase, DNA packagin 97.2 0.0019 6.4E-08 65.0 11.8 71 40-110 161-231 (385)
101 2b8t_A Thymidine kinase; deoxy 97.2 0.00044 1.5E-08 64.1 6.4 41 55-97 10-50 (223)
102 3ec2_A DNA replication protein 97.2 0.00062 2.1E-08 60.9 7.2 26 56-81 37-62 (180)
103 2kjq_A DNAA-related protein; s 97.2 0.00082 2.8E-08 58.2 7.3 25 56-80 35-59 (149)
104 3kl4_A SRP54, signal recogniti 97.1 0.0037 1.3E-07 63.8 12.7 92 57-157 97-190 (433)
105 3cpe_A Terminase, DNA packagin 97.1 0.0017 5.7E-08 69.8 10.7 72 41-112 162-233 (592)
106 4b3f_X DNA-binding protein smu 97.1 0.00084 2.9E-08 73.0 7.7 66 42-109 189-255 (646)
107 1xx6_A Thymidine kinase; NESG, 96.9 0.0017 5.7E-08 58.7 6.7 40 56-97 7-46 (191)
108 2gk6_A Regulator of nonsense t 96.9 0.0017 5.8E-08 70.2 8.0 67 42-109 180-246 (624)
109 3te6_A Regulatory protein SIR3 96.7 0.01 3.6E-07 57.9 11.7 26 56-81 44-69 (318)
110 2j9r_A Thymidine kinase; TK1, 96.7 0.004 1.4E-07 56.8 8.1 41 56-98 27-67 (214)
111 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0048 1.6E-07 57.3 8.4 28 54-81 20-47 (235)
112 2wjy_A Regulator of nonsense t 96.6 0.003 1E-07 69.9 8.0 67 42-109 356-422 (800)
113 2xzl_A ATP-dependent helicase 96.6 0.0022 7.5E-08 71.1 6.8 66 43-109 361-426 (802)
114 2w58_A DNAI, primosome compone 96.6 0.0061 2.1E-07 55.4 8.7 24 58-81 55-78 (202)
115 1l8q_A Chromosomal replication 96.6 0.0085 2.9E-07 59.0 10.4 36 57-94 37-72 (324)
116 1vma_A Cell division protein F 96.6 0.0078 2.7E-07 58.6 9.7 105 56-171 103-210 (306)
117 3dm5_A SRP54, signal recogniti 96.5 0.014 4.9E-07 59.5 11.2 91 57-156 100-192 (443)
118 2px0_A Flagellar biosynthesis 96.5 0.0074 2.5E-07 58.6 8.6 87 56-156 104-192 (296)
119 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0069 2.4E-07 59.8 8.4 87 50-156 164-250 (330)
120 3jvv_A Twitching mobility prot 96.4 0.0041 1.4E-07 62.0 6.3 28 54-81 120-147 (356)
121 3bos_A Putative DNA replicatio 96.3 0.015 5E-07 54.1 9.6 25 56-80 51-75 (242)
122 3b85_A Phosphate starvation-in 96.3 0.0039 1.3E-07 57.2 5.1 37 44-80 9-45 (208)
123 3e70_C DPA, signal recognition 96.3 0.014 4.9E-07 57.3 9.5 93 56-156 128-221 (328)
124 1njg_A DNA polymerase III subu 96.2 0.018 6.1E-07 53.4 9.5 35 47-81 32-69 (250)
125 3vkw_A Replicase large subunit 96.2 0.0055 1.9E-07 62.4 6.0 45 56-107 160-204 (446)
126 2chg_A Replication factor C sm 96.1 0.027 9.2E-07 51.3 10.3 33 47-79 26-60 (226)
127 1sxj_A Activator 1 95 kDa subu 96.1 0.023 7.8E-07 59.8 10.8 24 58-81 78-101 (516)
128 2r2a_A Uncharacterized protein 96.0 0.026 9E-07 51.1 9.4 23 59-81 7-29 (199)
129 3h4m_A Proteasome-activating n 96.0 0.016 5.6E-07 55.6 8.5 27 55-81 49-75 (285)
130 1w4r_A Thymidine kinase; type 96.0 0.0049 1.7E-07 55.4 4.2 39 56-96 19-57 (195)
131 2z4s_A Chromosomal replication 95.9 0.032 1.1E-06 57.4 10.4 39 57-95 130-168 (440)
132 3b9q_A Chloroplast SRP recepto 95.9 0.028 9.4E-07 54.6 9.4 26 56-81 99-124 (302)
133 2orv_A Thymidine kinase; TP4A 95.9 0.012 4E-07 54.3 6.1 41 56-98 18-58 (234)
134 2qen_A Walker-type ATPase; unk 95.8 0.077 2.6E-06 52.3 12.6 34 48-81 22-55 (350)
135 3lfu_A DNA helicase II; SF1 he 95.8 0.01 3.5E-07 64.4 6.5 70 42-113 9-80 (647)
136 1ls1_A Signal recognition part 95.7 0.057 1.9E-06 52.2 10.8 92 56-156 97-190 (295)
137 2v1u_A Cell division control p 95.7 0.02 6.8E-07 57.5 7.8 48 455-503 328-377 (387)
138 2zpa_A Uncharacterized protein 95.7 0.026 9E-07 60.4 8.8 60 42-106 175-236 (671)
139 2yhs_A FTSY, cell division pro 95.6 0.01 3.5E-07 61.2 5.4 92 56-156 292-385 (503)
140 3syl_A Protein CBBX; photosynt 95.6 0.029 9.9E-07 54.5 8.5 23 57-79 67-89 (309)
141 2og2_A Putative signal recogni 95.6 0.039 1.3E-06 54.8 9.3 26 56-81 156-181 (359)
142 1fnn_A CDC6P, cell division co 95.6 0.042 1.4E-06 55.2 9.8 44 455-499 328-375 (389)
143 3e2i_A Thymidine kinase; Zn-bi 95.6 0.018 6.3E-07 52.4 6.2 42 55-98 26-67 (219)
144 3vfd_A Spastin; ATPase, microt 95.5 0.05 1.7E-06 54.9 10.2 24 57-80 148-171 (389)
145 2qby_B CDC6 homolog 3, cell di 95.5 0.026 8.8E-07 56.7 8.0 46 455-501 316-363 (384)
146 1zu4_A FTSY; GTPase, signal re 95.5 0.023 7.8E-07 55.7 7.1 26 56-81 104-129 (320)
147 2qby_A CDC6 homolog 1, cell di 95.5 0.027 9.2E-07 56.4 7.8 25 57-81 45-69 (386)
148 1znw_A Guanylate kinase, GMP k 95.4 0.0081 2.8E-07 54.9 3.5 28 53-80 16-43 (207)
149 1jr3_A DNA polymerase III subu 95.4 0.091 3.1E-06 52.4 11.5 32 50-81 28-62 (373)
150 1kgd_A CASK, peripheral plasma 95.4 0.0093 3.2E-07 53.2 3.5 25 56-80 4-28 (180)
151 3tr0_A Guanylate kinase, GMP k 95.3 0.0087 3E-07 54.4 3.3 27 54-80 4-30 (205)
152 1d2n_A N-ethylmaleimide-sensit 95.3 0.02 6.9E-07 54.6 5.9 23 58-80 65-87 (272)
153 1rj9_A FTSY, signal recognitio 95.3 0.036 1.2E-06 53.9 7.6 26 56-81 101-126 (304)
154 2eyu_A Twitching motility prot 95.2 0.007 2.4E-07 57.6 2.4 27 54-80 22-48 (261)
155 1z6g_A Guanylate kinase; struc 95.2 0.0094 3.2E-07 55.0 3.2 29 53-81 19-47 (218)
156 1lvg_A Guanylate kinase, GMP k 95.2 0.0092 3.1E-07 54.2 3.0 26 55-80 2-27 (198)
157 2qz4_A Paraplegin; AAA+, SPG7, 95.1 0.025 8.6E-07 53.4 5.8 26 56-81 38-63 (262)
158 2gza_A Type IV secretion syste 95.0 0.012 3.9E-07 59.0 3.5 34 48-81 166-199 (361)
159 4gp7_A Metallophosphoesterase; 95.0 0.0063 2.2E-07 53.8 1.2 22 55-76 7-28 (171)
160 1iqp_A RFCS; clamp loader, ext 94.9 0.073 2.5E-06 51.9 8.9 32 49-80 36-69 (327)
161 2r6a_A DNAB helicase, replicat 94.9 0.064 2.2E-06 55.4 8.8 42 52-94 198-239 (454)
162 2qp9_X Vacuolar protein sortin 94.9 0.023 7.8E-07 56.7 5.2 25 57-81 84-108 (355)
163 3cf0_A Transitional endoplasmi 94.9 0.043 1.5E-06 53.3 7.0 27 55-81 47-73 (301)
164 1sxj_E Activator 1 40 kDa subu 94.9 0.11 3.7E-06 51.4 10.2 21 59-79 38-58 (354)
165 3hgt_A HDA1 complex subunit 3; 94.8 0.078 2.7E-06 51.4 8.5 119 269-419 113-241 (328)
166 3eie_A Vacuolar protein sortin 94.8 0.025 8.4E-07 55.6 5.1 25 57-81 51-75 (322)
167 1zp6_A Hypothetical protein AT 94.8 0.01 3.5E-07 53.3 2.1 28 53-80 5-32 (191)
168 2j41_A Guanylate kinase; GMP, 94.8 0.015 5.2E-07 52.7 3.2 27 54-80 3-29 (207)
169 2oap_1 GSPE-2, type II secreti 94.8 0.02 6.8E-07 60.0 4.5 44 35-79 239-282 (511)
170 1s96_A Guanylate kinase, GMP k 94.8 0.017 5.8E-07 53.3 3.5 29 53-81 12-40 (219)
171 3u61_B DNA polymerase accessor 94.7 0.14 4.7E-06 50.1 10.4 32 49-80 37-71 (324)
172 3pfi_A Holliday junction ATP-d 94.7 0.094 3.2E-06 51.6 9.1 23 58-80 56-78 (338)
173 2fna_A Conserved hypothetical 94.7 0.24 8.3E-06 48.7 12.2 24 58-81 31-54 (357)
174 3tif_A Uncharacterized ABC tra 94.7 0.012 4E-07 55.1 2.3 25 54-78 28-52 (235)
175 3tau_A Guanylate kinase, GMP k 94.7 0.018 6.1E-07 52.6 3.5 27 55-81 6-32 (208)
176 1htw_A HI0065; nucleotide-bind 94.7 0.025 8.4E-07 49.2 4.1 27 55-81 31-57 (158)
177 3a00_A Guanylate kinase, GMP k 94.7 0.016 5.5E-07 51.8 3.0 24 57-80 1-24 (186)
178 1a5t_A Delta prime, HOLB; zinc 94.6 0.23 7.8E-06 48.8 11.6 37 44-80 4-47 (334)
179 2ehv_A Hypothetical protein PH 94.6 0.014 4.8E-07 54.7 2.5 27 53-79 26-52 (251)
180 3ney_A 55 kDa erythrocyte memb 94.5 0.022 7.4E-07 51.5 3.5 27 55-81 17-43 (197)
181 1p9r_A General secretion pathw 94.5 0.045 1.5E-06 55.7 6.2 35 47-81 155-191 (418)
182 1uaa_A REP helicase, protein ( 94.5 0.038 1.3E-06 60.2 6.1 70 42-113 2-73 (673)
183 4f4c_A Multidrug resistance pr 94.4 0.029 9.9E-07 65.8 5.1 28 54-81 441-468 (1321)
184 2pcj_A ABC transporter, lipopr 94.3 0.015 5.3E-07 53.8 2.2 25 54-78 27-51 (224)
185 3pvs_A Replication-associated 94.3 0.029 1E-06 57.7 4.5 32 50-81 41-74 (447)
186 3gfo_A Cobalt import ATP-bindi 94.3 0.015 5.3E-07 55.6 2.2 26 54-79 31-56 (275)
187 3lnc_A Guanylate kinase, GMP k 94.3 0.014 4.9E-07 54.2 1.9 26 53-78 23-48 (231)
188 2cbz_A Multidrug resistance-as 94.3 0.015 5E-07 54.5 1.9 26 54-79 28-53 (237)
189 1j8m_F SRP54, signal recogniti 94.2 0.067 2.3E-06 51.7 6.5 54 57-112 98-153 (297)
190 3n70_A Transport activator; si 94.2 0.034 1.2E-06 47.5 4.0 28 52-79 19-46 (145)
191 2q6t_A DNAB replication FORK h 94.2 0.15 5.1E-06 52.4 9.5 40 54-94 197-236 (444)
192 1sgw_A Putative ABC transporte 94.2 0.017 5.7E-07 53.1 2.0 25 54-78 32-56 (214)
193 2chq_A Replication factor C sm 94.1 0.062 2.1E-06 52.2 6.2 22 59-80 40-61 (319)
194 2pze_A Cystic fibrosis transme 94.1 0.017 5.8E-07 53.7 1.9 26 54-79 31-56 (229)
195 4g1u_C Hemin import ATP-bindin 94.1 0.017 5.9E-07 55.0 1.9 26 54-79 34-59 (266)
196 2zu0_C Probable ATP-dependent 94.1 0.021 7.2E-07 54.4 2.5 26 54-79 43-68 (267)
197 2ff7_A Alpha-hemolysin translo 94.0 0.017 5.9E-07 54.3 1.9 26 54-79 32-57 (247)
198 1b0u_A Histidine permease; ABC 94.0 0.02 6.9E-07 54.4 2.3 25 54-78 29-53 (262)
199 1pjr_A PCRA; DNA repair, DNA r 94.0 0.057 2E-06 59.3 6.3 69 42-112 11-81 (724)
200 2d2e_A SUFC protein; ABC-ATPas 94.0 0.021 7.2E-07 53.9 2.4 26 54-79 26-51 (250)
201 3c8u_A Fructokinase; YP_612366 94.0 0.025 8.5E-07 51.6 2.8 25 55-79 20-44 (208)
202 1hqc_A RUVB; extended AAA-ATPa 94.0 0.15 5.2E-06 49.6 8.8 24 57-80 38-61 (324)
203 1ji0_A ABC transporter; ATP bi 94.0 0.02 6.9E-07 53.6 2.2 26 54-79 29-54 (240)
204 1g6h_A High-affinity branched- 94.0 0.02 6.9E-07 54.2 2.2 25 54-78 30-54 (257)
205 2ewv_A Twitching motility prot 94.0 0.02 6.9E-07 57.4 2.3 28 54-81 133-160 (372)
206 2olj_A Amino acid ABC transpor 93.9 0.022 7.4E-07 54.2 2.3 25 54-78 47-71 (263)
207 3u4q_A ATP-dependent helicase/ 93.9 0.065 2.2E-06 62.6 6.8 70 40-111 8-81 (1232)
208 3vaa_A Shikimate kinase, SK; s 93.9 0.033 1.1E-06 50.4 3.5 28 54-81 22-49 (199)
209 3co5_A Putative two-component 93.9 0.034 1.2E-06 47.3 3.3 28 48-75 18-45 (143)
210 1vpl_A ABC transporter, ATP-bi 93.9 0.022 7.7E-07 53.8 2.3 25 54-78 38-62 (256)
211 1sxj_B Activator 1 37 kDa subu 93.9 0.12 4.1E-06 50.2 7.8 32 49-80 32-65 (323)
212 2ghi_A Transport protein; mult 93.9 0.02 6.8E-07 54.4 1.9 26 54-79 43-68 (260)
213 2v9p_A Replication protein E1; 93.8 0.031 1.1E-06 54.2 3.2 29 53-81 122-150 (305)
214 1mv5_A LMRA, multidrug resista 93.8 0.02 6.9E-07 53.7 1.8 26 54-79 25-50 (243)
215 2ihy_A ABC transporter, ATP-bi 93.8 0.021 7.2E-07 54.8 1.9 25 54-78 44-68 (279)
216 2qi9_C Vitamin B12 import ATP- 93.8 0.024 8.1E-07 53.4 2.3 26 54-79 23-48 (249)
217 2ffh_A Protein (FFH); SRP54, s 93.8 0.43 1.5E-05 48.4 11.7 54 57-112 98-153 (425)
218 4eun_A Thermoresistant glucoki 93.8 0.037 1.3E-06 50.1 3.5 26 55-80 27-52 (200)
219 2ixe_A Antigen peptide transpo 93.7 0.022 7.4E-07 54.5 1.9 26 54-79 42-67 (271)
220 4a74_A DNA repair and recombin 93.7 0.021 7.1E-07 52.8 1.8 27 54-80 22-48 (231)
221 4f4c_A Multidrug resistance pr 93.7 0.038 1.3E-06 64.9 4.3 26 54-79 1102-1127(1321)
222 2nq2_C Hypothetical ABC transp 93.7 0.022 7.7E-07 53.8 1.9 26 54-79 28-53 (253)
223 2cvh_A DNA repair and recombin 93.6 0.032 1.1E-06 51.1 2.9 26 54-79 17-42 (220)
224 1ye8_A Protein THEP1, hypothet 93.6 0.04 1.4E-06 48.9 3.3 22 59-80 2-23 (178)
225 2yz2_A Putative ABC transporte 93.6 0.027 9.2E-07 53.7 2.3 25 54-78 30-54 (266)
226 1n0w_A DNA repair protein RAD5 93.5 0.055 1.9E-06 50.3 4.2 27 54-80 21-47 (243)
227 3asz_A Uridine kinase; cytidin 93.5 0.036 1.2E-06 50.5 2.8 26 55-80 4-29 (211)
228 3nh6_A ATP-binding cassette SU 93.4 0.02 6.8E-07 55.7 1.1 26 54-79 77-102 (306)
229 3fvq_A Fe(3+) IONS import ATP- 93.4 0.03 1E-06 55.6 2.4 26 54-79 27-52 (359)
230 1jbk_A CLPB protein; beta barr 93.4 0.089 3E-06 46.5 5.3 34 47-80 31-66 (195)
231 2i3b_A HCR-ntpase, human cance 93.3 0.044 1.5E-06 49.2 3.2 25 57-81 1-25 (189)
232 1kag_A SKI, shikimate kinase I 93.3 0.045 1.5E-06 48.0 3.2 26 56-81 3-28 (173)
233 2qor_A Guanylate kinase; phosp 93.2 0.046 1.6E-06 49.6 3.2 28 54-81 9-36 (204)
234 3tqc_A Pantothenate kinase; bi 93.2 0.12 4E-06 50.5 6.3 22 59-80 94-115 (321)
235 2bdt_A BH3686; alpha-beta prot 93.2 0.036 1.2E-06 49.6 2.4 23 57-79 2-24 (189)
236 1cr0_A DNA primase/helicase; R 93.2 0.05 1.7E-06 52.6 3.5 31 52-82 30-60 (296)
237 1z47_A CYSA, putative ABC-tran 93.1 0.036 1.2E-06 55.0 2.4 25 54-78 38-62 (355)
238 3rlf_A Maltose/maltodextrin im 93.1 0.037 1.3E-06 55.3 2.5 26 54-79 26-51 (381)
239 2bbs_A Cystic fibrosis transme 93.1 0.031 1.1E-06 53.9 1.9 25 54-78 61-85 (290)
240 1knq_A Gluconate kinase; ALFA/ 93.0 0.047 1.6E-06 48.0 2.8 24 56-79 7-30 (175)
241 4a1f_A DNAB helicase, replicat 93.0 0.094 3.2E-06 51.6 5.2 40 53-94 42-81 (338)
242 2yyz_A Sugar ABC transporter, 93.0 0.039 1.3E-06 54.8 2.5 26 54-79 26-51 (359)
243 3aez_A Pantothenate kinase; tr 93.0 0.062 2.1E-06 52.4 3.9 26 54-79 87-112 (312)
244 3hu3_A Transitional endoplasmi 92.9 0.19 6.6E-06 52.2 7.7 26 56-81 237-262 (489)
245 2onk_A Molybdate/tungstate ABC 92.9 0.041 1.4E-06 51.5 2.3 24 55-79 23-46 (240)
246 2gno_A DNA polymerase III, gam 92.9 0.37 1.3E-05 46.7 9.2 28 51-78 10-39 (305)
247 2it1_A 362AA long hypothetical 92.9 0.042 1.4E-06 54.7 2.5 26 54-79 26-51 (362)
248 3exa_A TRNA delta(2)-isopenten 92.8 0.057 1.9E-06 52.2 3.2 25 56-80 2-26 (322)
249 3uie_A Adenylyl-sulfate kinase 92.7 0.055 1.9E-06 48.9 2.9 27 54-80 22-48 (200)
250 1v43_A Sugar-binding transport 92.7 0.045 1.6E-06 54.6 2.5 26 54-79 34-59 (372)
251 1kht_A Adenylate kinase; phosp 92.7 0.066 2.3E-06 47.6 3.4 25 56-80 2-26 (192)
252 2jeo_A Uridine-cytidine kinase 92.7 0.049 1.7E-06 51.0 2.7 26 54-79 22-47 (245)
253 2p65_A Hypothetical protein PF 92.7 0.081 2.8E-06 46.6 4.0 33 48-80 32-66 (187)
254 3tui_C Methionine import ATP-b 92.7 0.047 1.6E-06 54.3 2.5 27 54-80 51-77 (366)
255 3d31_A Sulfate/molybdate ABC t 92.7 0.036 1.2E-06 54.9 1.7 26 54-79 23-48 (348)
256 2pjz_A Hypothetical protein ST 92.6 0.04 1.4E-06 52.3 1.9 25 54-79 28-52 (263)
257 1g29_1 MALK, maltose transport 92.6 0.046 1.6E-06 54.7 2.4 25 54-78 26-50 (372)
258 3gd7_A Fusion complex of cysti 92.6 0.045 1.6E-06 55.0 2.4 26 54-79 44-69 (390)
259 2dr3_A UPF0273 protein PH0284; 92.6 0.12 4E-06 48.2 5.1 27 55-81 21-47 (247)
260 3a8t_A Adenylate isopentenyltr 92.5 0.058 2E-06 52.8 2.9 24 56-79 39-62 (339)
261 1gm5_A RECG; helicase, replica 92.5 0.16 5.4E-06 56.0 6.7 78 282-364 417-495 (780)
262 2qmh_A HPR kinase/phosphorylas 92.4 0.064 2.2E-06 48.2 2.8 25 56-80 33-57 (205)
263 1qvr_A CLPB protein; coiled co 92.4 0.23 7.8E-06 55.6 7.9 33 48-80 180-214 (854)
264 3trf_A Shikimate kinase, SK; a 92.3 0.087 3E-06 46.7 3.6 25 57-81 5-29 (185)
265 1qhx_A CPT, protein (chloramph 92.2 0.08 2.7E-06 46.6 3.3 26 56-81 2-27 (178)
266 2bbw_A Adenylate kinase 4, AK4 92.2 0.082 2.8E-06 49.5 3.5 26 56-81 26-51 (246)
267 1ex7_A Guanylate kinase; subst 92.2 0.084 2.9E-06 47.1 3.3 24 58-81 2-25 (186)
268 1tf7_A KAIC; homohexamer, hexa 92.2 0.18 6.1E-06 53.0 6.4 30 53-82 277-306 (525)
269 1oxx_K GLCV, glucose, ABC tran 92.1 0.037 1.3E-06 54.9 0.9 26 54-79 28-53 (353)
270 2ze6_A Isopentenyl transferase 92.1 0.069 2.3E-06 50.4 2.8 22 59-80 3-24 (253)
271 3lw7_A Adenylate kinase relate 92.0 0.084 2.9E-06 46.0 3.1 20 58-77 2-21 (179)
272 2zts_A Putative uncharacterize 92.0 0.071 2.4E-06 49.8 2.7 27 55-81 28-54 (251)
273 3kta_A Chromosome segregation 91.9 0.097 3.3E-06 46.3 3.4 22 59-80 28-49 (182)
274 2d7d_A Uvrabc system protein B 91.9 0.27 9.2E-06 53.2 7.5 70 39-113 9-83 (661)
275 3cm0_A Adenylate kinase; ATP-b 91.9 0.07 2.4E-06 47.4 2.5 26 56-81 3-28 (186)
276 3umf_A Adenylate kinase; rossm 91.8 0.079 2.7E-06 48.6 2.8 28 54-81 26-53 (217)
277 3kb2_A SPBC2 prophage-derived 91.7 0.096 3.3E-06 45.7 3.2 23 59-81 3-25 (173)
278 2v3c_C SRP54, signal recogniti 91.7 0.11 3.6E-06 53.1 3.9 24 58-81 100-123 (432)
279 1f2t_A RAD50 ABC-ATPase; DNA d 91.7 0.11 3.6E-06 44.6 3.3 22 58-79 24-45 (149)
280 2bwj_A Adenylate kinase 5; pho 91.6 0.11 3.7E-06 46.6 3.5 29 53-81 8-36 (199)
281 1nij_A Hypothetical protein YJ 91.6 0.11 3.6E-06 50.9 3.6 23 58-80 5-27 (318)
282 2c95_A Adenylate kinase 1; tra 91.6 0.12 4.3E-06 46.0 3.8 28 54-81 6-33 (196)
283 2xxa_A Signal recognition part 91.5 0.23 7.8E-06 50.7 6.1 54 58-112 101-156 (433)
284 2qt1_A Nicotinamide riboside k 91.5 0.07 2.4E-06 48.4 2.1 27 53-79 17-43 (207)
285 2f1r_A Molybdopterin-guanine d 91.5 0.061 2.1E-06 47.3 1.6 23 58-80 3-25 (171)
286 4e22_A Cytidylate kinase; P-lo 91.5 0.11 3.7E-06 49.0 3.4 27 55-81 25-51 (252)
287 1nlf_A Regulatory protein REPA 91.4 0.074 2.5E-06 50.9 2.2 28 53-80 26-53 (279)
288 2qgz_A Helicase loader, putati 91.4 0.19 6.6E-06 48.8 5.2 25 57-81 152-176 (308)
289 3iij_A Coilin-interacting nucl 91.4 0.11 3.7E-06 45.9 3.2 26 55-80 9-34 (180)
290 1zd8_A GTP:AMP phosphotransfer 91.3 0.13 4.4E-06 47.4 3.8 27 55-81 5-31 (227)
291 3foz_A TRNA delta(2)-isopenten 91.3 0.1 3.6E-06 50.3 3.1 23 58-80 11-33 (316)
292 1rz3_A Hypothetical protein rb 91.3 0.16 5.3E-06 45.9 4.2 24 56-79 21-44 (201)
293 1y63_A LMAJ004144AAA protein; 91.3 0.12 4.2E-06 45.9 3.4 25 56-80 9-33 (184)
294 1cke_A CK, MSSA, protein (cyti 91.3 0.12 4E-06 47.5 3.4 25 57-81 5-29 (227)
295 2pez_A Bifunctional 3'-phospho 91.2 0.11 3.7E-06 45.9 3.0 24 56-79 4-27 (179)
296 1in4_A RUVB, holliday junction 91.2 0.14 4.8E-06 50.4 4.0 24 58-81 52-75 (334)
297 2j37_W Signal recognition part 91.1 1.3 4.5E-05 45.9 11.4 50 59-110 103-154 (504)
298 2v54_A DTMP kinase, thymidylat 91.0 0.14 4.7E-06 46.2 3.5 25 56-80 3-27 (204)
299 2npi_A Protein CLP1; CLP1-PCF1 91.0 0.091 3.1E-06 54.1 2.5 31 50-80 131-161 (460)
300 1tf7_A KAIC; homohexamer, hexa 91.0 0.085 2.9E-06 55.6 2.3 27 53-79 35-61 (525)
301 3lda_A DNA repair protein RAD5 91.0 0.15 5.2E-06 51.4 4.1 26 56-81 177-202 (400)
302 1ly1_A Polynucleotide kinase; 90.9 0.13 4.3E-06 45.3 3.1 22 58-79 3-24 (181)
303 4ag6_A VIRB4 ATPase, type IV s 90.9 0.14 4.9E-06 51.6 3.9 41 56-98 34-74 (392)
304 1tev_A UMP-CMP kinase; ploop, 90.8 0.12 4.1E-06 46.0 2.9 25 56-80 2-26 (196)
305 1m7g_A Adenylylsulfate kinase; 90.8 0.14 4.9E-06 46.5 3.5 28 52-79 20-47 (211)
306 3t61_A Gluconokinase; PSI-biol 90.8 0.12 4.1E-06 46.6 2.9 24 57-80 18-41 (202)
307 2rhm_A Putative kinase; P-loop 90.7 0.12 4.1E-06 46.0 2.8 25 56-80 4-28 (193)
308 1sq5_A Pantothenate kinase; P- 90.7 0.2 6.8E-06 48.7 4.5 26 55-80 78-103 (308)
309 1pzn_A RAD51, DNA repair and r 90.7 0.14 4.9E-06 50.7 3.5 26 56-81 130-155 (349)
310 2vp4_A Deoxynucleoside kinase; 90.6 0.099 3.4E-06 48.4 2.2 24 55-78 18-41 (230)
311 1tq4_A IIGP1, interferon-induc 90.5 0.23 7.8E-06 50.3 4.9 21 59-79 71-91 (413)
312 3sr0_A Adenylate kinase; phosp 90.5 0.15 5.3E-06 46.3 3.3 24 59-82 2-25 (206)
313 3tlx_A Adenylate kinase 2; str 90.5 0.19 6.6E-06 46.9 4.1 26 56-81 28-53 (243)
314 2bjv_A PSP operon transcriptio 90.3 0.2 6.9E-06 47.3 4.2 27 54-80 26-52 (265)
315 3sop_A Neuronal-specific septi 90.3 0.14 4.8E-06 48.7 2.9 22 59-80 4-25 (270)
316 2plr_A DTMP kinase, probable t 90.2 0.14 4.7E-06 46.4 2.8 26 56-81 3-28 (213)
317 2yvu_A Probable adenylyl-sulfa 90.2 0.15 5.2E-06 45.2 3.0 25 56-80 12-36 (186)
318 3cmu_A Protein RECA, recombina 90.2 0.14 4.6E-06 61.6 3.3 39 56-96 1426-1464(2050)
319 3b5x_A Lipid A export ATP-bind 90.1 0.12 4.2E-06 55.1 2.7 27 54-80 366-392 (582)
320 1v5w_A DMC1, meiotic recombina 90.1 0.2 6.9E-06 49.5 4.1 39 56-94 121-163 (343)
321 3crm_A TRNA delta(2)-isopenten 90.0 0.18 6.2E-06 49.1 3.5 23 58-80 6-28 (323)
322 2yv5_A YJEQ protein; hydrolase 89.9 0.24 8.4E-06 47.9 4.4 28 51-78 159-186 (302)
323 1sxj_C Activator 1 40 kDa subu 89.9 0.28 9.5E-06 48.3 4.9 32 49-80 36-69 (340)
324 3d3q_A TRNA delta(2)-isopenten 89.9 0.16 5.5E-06 49.8 3.1 23 58-80 8-30 (340)
325 3hws_A ATP-dependent CLP prote 89.9 0.65 2.2E-05 46.1 7.7 26 56-81 50-75 (363)
326 1aky_A Adenylate kinase; ATP:A 89.9 0.19 6.6E-06 45.9 3.5 26 56-81 3-28 (220)
327 1yqt_A RNAse L inhibitor; ATP- 89.9 0.13 4.5E-06 54.2 2.6 28 53-80 43-70 (538)
328 3nwj_A ATSK2; P loop, shikimat 89.8 0.19 6.4E-06 47.2 3.4 25 57-81 48-72 (250)
329 1gvn_B Zeta; postsegregational 89.8 0.15 5.2E-06 49.0 2.8 24 57-80 33-56 (287)
330 1e9r_A Conjugal transfer prote 89.8 0.18 6E-06 51.7 3.5 43 56-100 52-94 (437)
331 1np6_A Molybdopterin-guanine d 89.8 0.32 1.1E-05 42.8 4.7 23 58-80 7-29 (174)
332 3qf7_A RAD50; ABC-ATPase, ATPa 89.8 0.17 5.9E-06 50.5 3.3 21 59-79 25-45 (365)
333 2r44_A Uncharacterized protein 89.7 0.23 7.8E-06 48.6 4.1 37 45-81 34-70 (331)
334 2ius_A DNA translocase FTSK; n 89.7 0.3 1E-05 50.7 5.2 26 54-79 164-189 (512)
335 2jaq_A Deoxyguanosine kinase; 89.7 0.19 6.5E-06 45.1 3.3 23 59-81 2-24 (205)
336 3fb4_A Adenylate kinase; psych 89.6 0.19 6.7E-06 45.7 3.3 23 59-81 2-24 (216)
337 2if2_A Dephospho-COA kinase; a 89.6 0.19 6.5E-06 45.3 3.2 21 59-79 3-23 (204)
338 2wwf_A Thymidilate kinase, put 89.6 0.2 6.8E-06 45.4 3.3 25 56-80 9-33 (212)
339 3dl0_A Adenylate kinase; phosp 89.5 0.21 7.3E-06 45.4 3.5 23 59-81 2-24 (216)
340 3b60_A Lipid A export ATP-bind 89.5 0.12 4E-06 55.3 1.9 26 54-79 366-391 (582)
341 3hr8_A Protein RECA; alpha and 89.5 0.14 4.8E-06 50.7 2.3 38 56-95 60-97 (356)
342 2rcn_A Probable GTPase ENGC; Y 89.5 0.26 8.9E-06 48.8 4.2 27 53-79 211-237 (358)
343 1zak_A Adenylate kinase; ATP:A 89.4 0.19 6.4E-06 46.1 3.0 26 56-81 4-29 (222)
344 1nks_A Adenylate kinase; therm 89.4 0.19 6.6E-06 44.6 3.0 23 59-81 3-25 (194)
345 1lv7_A FTSH; alpha/beta domain 89.4 0.33 1.1E-05 45.5 4.8 24 57-80 45-68 (257)
346 1zuh_A Shikimate kinase; alpha 89.4 0.23 8E-06 43.1 3.5 24 58-81 8-31 (168)
347 3b9p_A CG5977-PA, isoform A; A 89.4 0.3 1E-05 46.9 4.6 26 56-81 53-78 (297)
348 1ofh_A ATP-dependent HSL prote 89.3 0.33 1.1E-05 46.7 5.0 25 57-81 50-74 (310)
349 3qf4_B Uncharacterized ABC tra 89.3 0.12 4.1E-06 55.4 1.8 27 54-80 378-404 (598)
350 4eaq_A DTMP kinase, thymidylat 89.3 0.39 1.3E-05 44.3 5.2 26 56-81 25-50 (229)
351 1nn5_A Similar to deoxythymidy 89.3 0.22 7.5E-06 45.2 3.4 26 55-80 7-32 (215)
352 1xjc_A MOBB protein homolog; s 89.3 0.35 1.2E-05 42.3 4.5 23 58-80 5-27 (169)
353 1jjv_A Dephospho-COA kinase; P 89.2 0.2 7E-06 45.2 3.1 21 59-79 4-24 (206)
354 1lw7_A Transcriptional regulat 89.2 0.16 5.4E-06 50.7 2.5 28 53-80 164-193 (365)
355 3bh0_A DNAB-like replicative h 89.2 0.24 8.3E-06 48.2 3.8 43 50-94 61-103 (315)
356 2cdn_A Adenylate kinase; phosp 89.2 0.24 8.1E-06 44.6 3.5 25 57-81 20-44 (201)
357 1via_A Shikimate kinase; struc 89.1 0.22 7.7E-06 43.6 3.2 23 59-81 6-28 (175)
358 3k1j_A LON protease, ATP-depen 89.1 0.53 1.8E-05 50.4 6.7 37 45-81 48-84 (604)
359 2z43_A DNA repair and recombin 89.1 0.25 8.7E-06 48.3 3.9 27 55-81 105-131 (324)
360 4a82_A Cystic fibrosis transme 89.1 0.12 4.3E-06 55.0 1.8 25 54-78 364-388 (578)
361 2vli_A Antibiotic resistance p 89.1 0.21 7.4E-06 43.9 3.1 26 56-81 4-29 (183)
362 2zr9_A Protein RECA, recombina 89.1 0.18 6.1E-06 49.9 2.8 38 55-94 59-96 (349)
363 2eyq_A TRCF, transcription-rep 89.0 1.4 4.7E-05 50.9 10.5 79 281-364 651-730 (1151)
364 1g5t_A COB(I)alamin adenosyltr 89.0 0.93 3.2E-05 40.5 7.1 39 57-97 28-66 (196)
365 2qag_B Septin-6, protein NEDD5 89.0 0.16 5.4E-06 51.5 2.3 27 52-78 35-63 (427)
366 1ixz_A ATP-dependent metallopr 88.9 0.24 8.1E-06 46.5 3.4 24 58-81 50-73 (254)
367 1svm_A Large T antigen; AAA+ f 88.9 0.21 7.1E-06 50.0 3.1 27 54-80 166-192 (377)
368 2yl4_A ATP-binding cassette SU 88.8 0.12 4.3E-06 55.2 1.5 27 54-80 367-393 (595)
369 3qks_A DNA double-strand break 88.8 0.24 8.3E-06 44.8 3.3 22 58-79 24-45 (203)
370 1odf_A YGR205W, hypothetical 3 88.8 0.21 7.2E-06 48.0 3.0 23 57-79 31-53 (290)
371 1e6c_A Shikimate kinase; phosp 88.7 0.23 7.9E-06 43.2 3.0 24 58-81 3-26 (173)
372 1gtv_A TMK, thymidylate kinase 88.7 0.12 4.2E-06 46.9 1.2 22 59-80 2-23 (214)
373 3eph_A TRNA isopentenyltransfe 88.6 0.21 7.1E-06 50.1 2.8 22 58-79 3-24 (409)
374 2qm8_A GTPase/ATPase; G protei 88.6 0.3 1E-05 48.0 4.1 32 49-80 43-78 (337)
375 3j16_B RLI1P; ribosome recycli 88.5 0.19 6.5E-06 53.7 2.6 28 53-80 99-126 (608)
376 1ukz_A Uridylate kinase; trans 88.5 0.27 9.3E-06 44.2 3.4 24 58-81 16-39 (203)
377 2obl_A ESCN; ATPase, hydrolase 88.4 0.19 6.4E-06 49.7 2.4 28 54-81 68-95 (347)
378 1yqt_A RNAse L inhibitor; ATP- 88.2 0.19 6.6E-06 52.9 2.4 26 55-80 310-335 (538)
379 3be4_A Adenylate kinase; malar 88.2 0.33 1.1E-05 44.3 3.8 25 57-81 5-29 (217)
380 2z0h_A DTMP kinase, thymidylat 88.2 0.27 9.1E-06 43.9 3.1 22 59-80 2-23 (197)
381 2iyv_A Shikimate kinase, SK; t 88.1 0.28 9.6E-06 43.3 3.2 24 58-81 3-26 (184)
382 4fcw_A Chaperone protein CLPB; 88.1 0.33 1.1E-05 46.9 3.9 23 58-80 48-70 (311)
383 4tmk_A Protein (thymidylate ki 88.1 0.5 1.7E-05 43.0 4.9 25 56-80 2-26 (213)
384 1pui_A ENGB, probable GTP-bind 88.1 0.15 5.2E-06 46.0 1.4 22 55-76 24-45 (210)
385 3bk7_A ABC transporter ATP-bin 88.0 0.2 6.8E-06 53.5 2.4 26 55-80 380-405 (607)
386 1qf9_A UMP/CMP kinase, protein 88.0 0.27 9.2E-06 43.6 3.0 24 58-81 7-30 (194)
387 3bk7_A ABC transporter ATP-bin 88.0 0.2 6.9E-06 53.5 2.4 27 53-79 113-139 (607)
388 3qf4_A ABC transporter, ATP-bi 88.0 0.16 5.5E-06 54.2 1.7 25 54-78 366-390 (587)
389 1ak2_A Adenylate kinase isoenz 88.0 0.31 1.1E-05 45.0 3.5 26 56-81 15-40 (233)
390 3ozx_A RNAse L inhibitor; ATP 87.9 0.2 6.8E-06 52.7 2.3 27 54-80 291-317 (538)
391 3io5_A Recombination and repai 87.9 0.13 4.5E-06 49.7 0.8 41 56-97 28-68 (333)
392 2i1q_A DNA repair and recombin 87.8 0.33 1.1E-05 47.3 3.7 26 56-81 97-122 (322)
393 1e4v_A Adenylate kinase; trans 87.8 0.28 9.5E-06 44.6 3.0 23 59-81 2-24 (214)
394 1sxj_D Activator 1 41 kDa subu 87.8 0.35 1.2E-05 47.6 4.0 33 48-80 47-81 (353)
395 2x8a_A Nuclear valosin-contain 87.7 0.26 9E-06 46.9 2.9 24 58-81 45-68 (274)
396 3nbx_X ATPase RAVA; AAA+ ATPas 87.7 0.4 1.4E-05 49.8 4.4 42 39-80 23-64 (500)
397 2pt5_A Shikimate kinase, SK; a 87.7 0.31 1.1E-05 42.2 3.1 23 59-81 2-24 (168)
398 2pbr_A DTMP kinase, thymidylat 87.7 0.31 1.1E-05 43.2 3.2 22 59-80 2-23 (195)
399 1u0l_A Probable GTPase ENGC; p 87.6 0.42 1.4E-05 46.2 4.3 26 53-78 165-190 (301)
400 2xb4_A Adenylate kinase; ATP-b 87.5 0.31 1.1E-05 44.8 3.1 23 59-81 2-24 (223)
401 4edh_A DTMP kinase, thymidylat 87.5 0.29 1E-05 44.6 2.9 26 55-80 4-29 (213)
402 3cf2_A TER ATPase, transitiona 87.5 1.2 4.3E-05 48.8 8.3 25 57-81 238-262 (806)
403 2dpy_A FLII, flagellum-specifi 87.5 0.24 8.3E-06 50.6 2.6 28 54-81 154-181 (438)
404 3a4m_A L-seryl-tRNA(SEC) kinas 87.4 0.29 1E-05 46.1 3.0 24 57-80 4-27 (260)
405 1vht_A Dephospho-COA kinase; s 87.3 0.28 9.7E-06 44.7 2.8 23 57-79 4-26 (218)
406 1iy2_A ATP-dependent metallopr 87.3 0.29 9.9E-06 46.6 2.9 24 58-81 74-97 (278)
407 3v9p_A DTMP kinase, thymidylat 87.3 0.28 9.4E-06 45.3 2.6 27 54-80 22-48 (227)
408 1uf9_A TT1252 protein; P-loop, 87.3 0.3 1E-05 43.7 2.9 23 58-80 9-31 (203)
409 1tue_A Replication protein E1; 87.3 0.27 9.4E-06 44.3 2.5 46 30-77 29-78 (212)
410 2p5t_B PEZT; postsegregational 87.3 0.22 7.5E-06 46.8 2.0 25 56-80 31-55 (253)
411 3cr8_A Sulfate adenylyltranfer 87.2 0.35 1.2E-05 50.9 3.7 27 54-80 366-392 (552)
412 3ozx_A RNAse L inhibitor; ATP 87.2 0.27 9.2E-06 51.7 2.8 26 54-79 22-47 (538)
413 3bgw_A DNAB-like replicative h 87.1 0.34 1.2E-05 49.6 3.5 40 53-94 193-232 (444)
414 3auy_A DNA double-strand break 87.1 0.3 1E-05 48.8 3.0 22 58-79 26-47 (371)
415 2oxc_A Probable ATP-dependent 87.1 2.2 7.5E-05 39.0 8.8 75 281-364 91-171 (230)
416 1ojl_A Transcriptional regulat 87.0 0.4 1.4E-05 46.4 3.8 26 55-80 23-48 (304)
417 1t6n_A Probable ATP-dependent 87.0 4.5 0.00016 36.4 10.9 76 282-364 82-163 (220)
418 3qkt_A DNA double-strand break 87.0 0.31 1.1E-05 48.0 3.1 21 58-78 24-44 (339)
419 3uk6_A RUVB-like 2; hexameric 86.8 0.56 1.9E-05 46.5 4.9 25 57-81 70-94 (368)
420 3ux8_A Excinuclease ABC, A sub 86.7 0.2 7E-06 54.4 1.7 21 55-75 346-366 (670)
421 1u94_A RECA protein, recombina 86.7 0.32 1.1E-05 48.3 2.9 38 56-95 62-99 (356)
422 1oix_A RAS-related protein RAB 86.7 0.36 1.2E-05 42.9 3.0 22 59-80 31-52 (191)
423 3lv8_A DTMP kinase, thymidylat 86.6 0.66 2.3E-05 43.0 4.8 26 55-80 25-50 (236)
424 3ux8_A Excinuclease ABC, A sub 86.5 0.21 7.3E-06 54.2 1.7 21 54-74 41-61 (670)
425 3euj_A Chromosome partition pr 86.4 0.29 9.9E-06 50.5 2.5 23 58-80 30-52 (483)
426 2f9l_A RAB11B, member RAS onco 86.4 0.38 1.3E-05 43.0 3.1 22 59-80 7-28 (199)
427 3r20_A Cytidylate kinase; stru 86.3 0.48 1.6E-05 43.8 3.7 26 56-81 8-33 (233)
428 2iw3_A Elongation factor 3A; a 86.1 0.29 9.8E-06 54.9 2.4 25 54-78 458-482 (986)
429 3tmk_A Thymidylate kinase; pho 86.0 0.45 1.6E-05 43.4 3.4 26 56-81 4-29 (216)
430 3d8b_A Fidgetin-like protein 1 86.0 0.63 2.2E-05 46.1 4.7 25 57-81 117-141 (357)
431 3oiy_A Reverse gyrase helicase 85.8 0.89 3.1E-05 45.8 5.8 78 280-364 62-144 (414)
432 3t15_A Ribulose bisphosphate c 85.6 0.46 1.6E-05 45.7 3.3 24 58-81 37-60 (293)
433 1vec_A ATP-dependent RNA helic 85.6 3.8 0.00013 36.3 9.5 76 281-364 70-151 (206)
434 1e69_A Chromosome segregation 85.6 0.42 1.4E-05 46.7 3.0 23 58-80 25-47 (322)
435 1w1w_A Structural maintenance 85.4 0.48 1.6E-05 48.3 3.5 26 56-81 25-50 (430)
436 1xwi_A SKD1 protein; VPS4B, AA 85.2 0.5 1.7E-05 46.1 3.5 25 57-81 45-69 (322)
437 3j16_B RLI1P; ribosome recycli 85.2 0.47 1.6E-05 50.6 3.5 24 57-80 378-401 (608)
438 3fe2_A Probable ATP-dependent 85.2 1.9 6.6E-05 39.7 7.4 74 282-364 102-181 (242)
439 2www_A Methylmalonic aciduria 85.1 0.64 2.2E-05 45.9 4.2 24 57-80 74-97 (349)
440 1wb9_A DNA mismatch repair pro 84.9 0.48 1.6E-05 52.3 3.5 24 56-79 606-629 (800)
441 1q3t_A Cytidylate kinase; nucl 84.9 0.52 1.8E-05 43.6 3.2 27 54-80 13-39 (236)
442 1t9h_A YLOQ, probable GTPase E 84.9 0.22 7.6E-06 48.2 0.7 25 53-77 169-193 (307)
443 1um8_A ATP-dependent CLP prote 84.8 2 6.8E-05 42.7 7.7 25 57-81 72-96 (376)
444 4hlc_A DTMP kinase, thymidylat 84.7 0.93 3.2E-05 40.9 4.8 38 57-96 2-39 (205)
445 1ewq_A DNA mismatch repair pro 84.4 0.51 1.7E-05 51.8 3.3 23 57-79 576-598 (765)
446 2o5v_A DNA replication and rep 84.4 0.5 1.7E-05 46.8 3.0 42 322-367 302-343 (359)
447 2grj_A Dephospho-COA kinase; T 84.3 0.57 1.9E-05 41.9 3.1 23 58-80 13-35 (192)
448 1xp8_A RECA protein, recombina 84.3 0.47 1.6E-05 47.2 2.8 37 56-94 73-109 (366)
449 2dyk_A GTP-binding protein; GT 84.3 0.59 2E-05 39.7 3.1 22 59-80 3-24 (161)
450 2vhj_A Ntpase P4, P4; non- hyd 84.2 0.53 1.8E-05 45.7 3.0 27 54-80 120-146 (331)
451 3m6a_A ATP-dependent protease 84.2 0.54 1.9E-05 49.5 3.3 26 56-81 107-132 (543)
452 2l8b_A Protein TRAI, DNA helic 84.1 4.5 0.00015 35.5 8.5 63 41-105 33-98 (189)
453 3pxg_A Negative regulator of g 84.1 0.79 2.7E-05 47.3 4.5 32 49-80 191-224 (468)
454 3thx_B DNA mismatch repair pro 84.1 0.41 1.4E-05 53.4 2.5 24 55-78 671-694 (918)
455 3ice_A Transcription terminati 84.0 0.81 2.8E-05 45.5 4.2 32 48-79 162-196 (422)
456 2gj8_A MNME, tRNA modification 84.0 0.54 1.8E-05 40.9 2.8 24 56-79 3-26 (172)
457 4aby_A DNA repair protein RECN 84.0 0.19 6.5E-06 51.0 -0.3 24 56-80 60-83 (415)
458 1qde_A EIF4A, translation init 83.9 2.9 9.9E-05 37.8 7.9 74 281-364 81-160 (224)
459 3bor_A Human initiation factor 83.8 2.7 9.1E-05 38.6 7.7 76 281-364 97-178 (237)
460 2wji_A Ferrous iron transport 83.8 0.62 2.1E-05 40.1 3.1 21 58-78 4-24 (165)
461 2ce2_X GTPase HRAS; signaling 83.8 0.6 2.1E-05 39.6 3.0 22 59-80 5-26 (166)
462 1z2a_A RAS-related protein RAB 83.7 0.63 2.2E-05 39.8 3.1 21 59-79 7-27 (168)
463 2c9o_A RUVB-like 1; hexameric 83.7 0.98 3.3E-05 46.4 5.0 25 57-81 63-87 (456)
464 3ber_A Probable ATP-dependent 83.6 4.2 0.00014 37.7 9.0 75 281-364 110-191 (249)
465 3im1_A Protein SNU246, PRE-mRN 83.3 0.95 3.2E-05 44.2 4.5 67 473-540 1-71 (328)
466 2ged_A SR-beta, signal recogni 83.3 0.66 2.3E-05 40.9 3.1 24 57-80 48-71 (193)
467 1qhl_A Protein (cell division 83.3 0.22 7.4E-06 46.0 -0.2 22 60-81 30-51 (227)
468 1ltq_A Polynucleotide kinase; 83.3 0.62 2.1E-05 44.7 3.1 22 58-79 3-24 (301)
469 3ake_A Cytidylate kinase; CMP 83.1 0.66 2.3E-05 41.6 3.1 23 59-81 4-26 (208)
470 4b4t_J 26S protease regulatory 82.9 0.91 3.1E-05 45.5 4.2 26 56-81 181-206 (405)
471 4b4t_H 26S protease regulatory 82.9 1 3.4E-05 45.9 4.5 64 14-81 202-267 (467)
472 1ky3_A GTP-binding protein YPT 82.9 0.71 2.4E-05 40.0 3.1 22 59-80 10-31 (182)
473 2ocp_A DGK, deoxyguanosine kin 82.8 0.64 2.2E-05 43.1 2.9 24 57-80 2-25 (241)
474 3thx_A DNA mismatch repair pro 82.8 0.65 2.2E-05 52.0 3.4 23 55-77 660-682 (934)
475 1z0j_A RAB-22, RAS-related pro 82.7 0.74 2.5E-05 39.4 3.1 23 59-81 8-30 (170)
476 2v1x_A ATP-dependent DNA helic 82.7 1.4 4.8E-05 46.9 5.8 74 282-364 84-170 (591)
477 1q57_A DNA primase/helicase; d 82.6 0.73 2.5E-05 48.0 3.6 40 54-94 239-278 (503)
478 3tqf_A HPR(Ser) kinase; transf 82.6 0.69 2.4E-05 40.4 2.8 25 56-80 15-39 (181)
479 2r62_A Cell division protease 82.6 0.35 1.2E-05 45.7 1.0 24 57-80 44-67 (268)
480 1uj2_A Uridine-cytidine kinase 82.5 0.7 2.4E-05 43.2 3.1 23 58-80 23-45 (252)
481 1g8p_A Magnesium-chelatase 38 82.5 0.81 2.8E-05 44.9 3.7 26 56-81 44-69 (350)
482 1kao_A RAP2A; GTP-binding prot 82.5 0.76 2.6E-05 39.1 3.1 22 59-80 5-26 (167)
483 1a7j_A Phosphoribulokinase; tr 82.5 0.57 1.9E-05 45.0 2.5 23 57-79 5-27 (290)
484 1ek0_A Protein (GTP-binding pr 82.5 0.75 2.6E-05 39.3 3.1 23 59-81 5-27 (170)
485 1g16_A RAS-related protein SEC 82.3 0.75 2.5E-05 39.4 3.0 22 59-80 5-26 (170)
486 1u8z_A RAS-related protein RAL 82.3 0.77 2.6E-05 39.1 3.1 22 59-80 6-27 (168)
487 2wjg_A FEOB, ferrous iron tran 82.3 0.76 2.6E-05 40.3 3.1 22 58-79 8-29 (188)
488 1c9k_A COBU, adenosylcobinamid 82.3 0.72 2.5E-05 40.7 2.8 21 60-80 2-22 (180)
489 2iut_A DNA translocase FTSK; n 82.2 1.1 3.8E-05 46.9 4.7 41 56-96 213-255 (574)
490 2p67_A LAO/AO transport system 82.1 0.93 3.2E-05 44.6 3.9 25 56-80 55-79 (341)
491 2f6r_A COA synthase, bifunctio 82.1 0.73 2.5E-05 44.0 3.0 21 58-78 76-96 (281)
492 1u0j_A DNA replication protein 82.0 1.8 6.1E-05 40.7 5.6 50 28-79 72-126 (267)
493 2iw3_A Elongation factor 3A; a 81.9 0.38 1.3E-05 54.0 1.1 27 54-80 696-722 (986)
494 2erx_A GTP-binding protein DI- 81.9 0.83 2.8E-05 39.1 3.1 21 59-79 5-25 (172)
495 1wms_A RAB-9, RAB9, RAS-relate 81.9 0.82 2.8E-05 39.5 3.1 22 59-80 9-30 (177)
496 3ld9_A DTMP kinase, thymidylat 81.8 0.76 2.6E-05 42.1 2.9 25 56-80 20-44 (223)
497 1svi_A GTP-binding protein YSX 81.7 0.73 2.5E-05 40.7 2.8 22 57-78 23-44 (195)
498 2zan_A Vacuolar protein sortin 81.7 1.4 4.9E-05 44.9 5.3 25 57-81 167-191 (444)
499 1c1y_A RAS-related protein RAP 81.5 0.86 2.9E-05 38.8 3.1 21 59-79 5-25 (167)
500 2zej_A Dardarin, leucine-rich 81.5 0.67 2.3E-05 40.7 2.4 20 59-78 4-23 (184)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2e-75 Score=647.13 Aligned_cols=489 Identities=48% Similarity=0.786 Sum_probs=441.1
Q ss_pred CCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCC-CcEEEEeCccHH
Q 008735 21 KPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-GKLIGVTQPRRV 98 (555)
Q Consensus 21 ~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~-~~~i~~~~P~r~ 98 (555)
.+|..+. ++.+.+.+.+++.+|++.+|+++...+..+++++++||||||||+++|+++.......+ +..+++++|+++
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~ 151 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRV 151 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHH
Confidence 4566655 66788899999999999999999999999999999999999999999999877654332 557999999999
Q ss_pred HHHHHHHHHHHHhCCccCCEEEEEEecCCCCCch---------hhHHHhhcCCCCCCCceeEeecccccccchhHHHHHH
Q 008735 99 AAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS---------TRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLL 169 (555)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~---------~~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l 169 (555)
++.+++++++..++..++..+||..+++...... .....++.++.+.++++||+||+|+|..+.+.++.++
T Consensus 152 La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l 231 (773)
T 2xau_A 152 AAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLL 231 (773)
T ss_dssp HHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHH
Confidence 9999999999999989999999887654433222 2223556678899999999999999999999999999
Q ss_pred HHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCCc
Q 008735 170 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGR 249 (555)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~ 249 (555)
+.+...+ ++.++|+||||++.+.+++|+++.+++.++++
T Consensus 232 ~~l~~~~-----------------------------------------~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr 270 (773)
T 2xau_A 232 KQVVKRR-----------------------------------------PDLKIIIMSATLDAEKFQRYFNDAPLLAVPGR 270 (773)
T ss_dssp HHHHHHC-----------------------------------------TTCEEEEEESCSCCHHHHHHTTSCCEEECCCC
T ss_pred HHHHHhC-----------------------------------------CCceEEEEeccccHHHHHHHhcCCCcccccCc
Confidence 9988776 78899999999999999999999999999999
Q ss_pred cccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcC--CCCCCCeEEEEecCCCCH
Q 008735 250 QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL--PEASRKLVTVPIFSSLPS 327 (555)
Q Consensus 250 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~--~~~~~~~~v~~lh~~l~~ 327 (555)
.++++.+|...+..++....+..+..++....++++||||+++++++.+++.|.+.+..+ .....++.+.++||+|+.
T Consensus 271 ~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~ 350 (773)
T 2xau_A 271 TYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPP 350 (773)
T ss_dssp CCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCH
T ss_pred ccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCH
Confidence 999999999988888888888888888877778999999999999999999998643221 112237899999999999
Q ss_pred HHHHhhcCcCC-----CCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCC
Q 008735 328 EQQMRVFAPAA-----AGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR 402 (555)
Q Consensus 328 ~~r~~i~~~f~-----~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR 402 (555)
++|.++++.|+ +|.++||||||++|+|||+|+|++|||+|+.+.+.||+..|+..+...|+|.++|.||+|||||
T Consensus 351 ~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR 430 (773)
T 2xau_A 351 HQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR 430 (773)
T ss_dssp HHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGS
T ss_pred HHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCC
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccChhhH-hcccCCCCCcccccCchHHHHHHhhcCCCCccCCcCCCCCcHHHHHHHHHHHHHcCCccCCCCC
Q 008735 403 EGPGKCFRLYPENEF-DKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRASIIKSLEQLFLLGALTDDCKL 481 (555)
Q Consensus 403 ~~~G~~~~l~~~~~~-~~~~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~l~~~~~~ 481 (555)
.++|.||+||+++++ +.+.+...|||.+.+|..++|+++.+|+.++..|+|++||+.+.+..|++.|..+|+||++|++
T Consensus 431 ~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~l 510 (773)
T 2xau_A 431 TRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNL 510 (773)
T ss_dssp SSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCB
T ss_pred CCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCc
Confidence 999999999999999 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhhcccCCCChHHHHHHHHhhhcCCHHHHHHHHHhhcCCCcccCChhhHHHHHHHhhhccCCCCCCCC
Q 008735 482 SDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIFFRSPGEVRRGKKCNEIFCKSRWRSPH 553 (555)
Q Consensus 482 T~~lG~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (555)
|+ +|+.|+.+|++|++|++|+.+..++|++++++|+|+|+++++|..|.++++.++.+|++|.+.. |||
T Consensus 511 T~-lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~--~D~ 579 (773)
T 2xau_A 511 TP-LGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPD--GDH 579 (773)
T ss_dssp CH-HHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTT--BHH
T ss_pred Ch-hhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCC--CcH
Confidence 97 9999999999999999999999999999999999999999999999999999999999997543 555
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3e-53 Score=472.10 Aligned_cols=461 Identities=16% Similarity=0.146 Sum_probs=324.1
Q ss_pred CCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHH-HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHH
Q 008735 23 FFNDS-SSRRQKILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAA 100 (555)
Q Consensus 23 ~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~-i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~ 100 (555)
|..++ ++.+.+.+...++-.++++|.++++. +.++++++++||||||||+++++++++.... .+.++++++|+++++
T Consensus 10 ~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~il~i~P~r~La 88 (715)
T 2va8_A 10 IEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-NGGKAIYVTPLRALT 88 (715)
T ss_dssp GGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-SCSEEEEECSCHHHH
T ss_pred HHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-CCCeEEEEeCcHHHH
Confidence 43443 55677888888888999999999999 8899999999999999999999988865432 256899999999999
Q ss_pred HHHHHHHHHH--hCCccCCEEEEEEecCCC-------CCchhhHHHh-hcCCC-CCCCceeEeecccccccchhHHHHHH
Q 008735 101 VTVAKRVAEE--SGVELGQRVGYSIRFDDR-------TSTSTRIKEA-LLDPY-LSRYSAIIVDEAHERTVHTDVLLGLL 169 (555)
Q Consensus 101 ~~~~~~~~~~--~~~~~~~~vg~~~~~~~~-------~~~~~~i~~~-~~~~~-l~~~~~iIiDE~He~~~~~d~ll~~l 169 (555)
.++++++... .+..++..+|+....... +.+..++..+ ..++. ++++++||+||+|+..- +.....+
T Consensus 89 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~--~~~~~~l 166 (715)
T 2va8_A 89 NEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLND--PERGPVV 166 (715)
T ss_dssp HHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGC--TTTHHHH
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCC--cccchHH
Confidence 9999988422 233333333322221110 1122222222 22343 78999999999996431 1112233
Q ss_pred HHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhCCCCeEEeCC
Q 008735 170 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQG 248 (555)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~ 248 (555)
+.++.+. ++.|+|+||||+ |.+++++|++ .+.+...+
T Consensus 167 ~~i~~~~-----------------------------------------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~ 204 (715)
T 2va8_A 167 ESVTIRA-----------------------------------------KRRNLLALSATISNYKQIAKWLG-AEPVATNW 204 (715)
T ss_dssp HHHHHHH-----------------------------------------HTSEEEEEESCCTTHHHHHHHHT-CEEEECCC
T ss_pred HHHHHhc-----------------------------------------ccCcEEEEcCCCCCHHHHHHHhC-CCccCCCC
Confidence 3333222 367999999999 6899999997 45677777
Q ss_pred ccccceEEEcCCC-----------C---CCh--HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhc--CC
Q 008735 249 RQFPVEILYTLYP-----------E---PDY--LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQ--LP 310 (555)
Q Consensus 249 ~~~~v~~~~~~~~-----------~---~~~--~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~--~~ 310 (555)
+++++...+.... . ... .+.....+.+... .++++||||+++++++.+++.|.+.+.. ..
T Consensus 205 r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~ 282 (715)
T 2va8_A 205 RPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLD 282 (715)
T ss_dssp CSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCC
T ss_pred CCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCC
Confidence 7777664432111 0 000 1223333333332 4789999999999999999999875321 00
Q ss_pred C--------------C-----------CCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEe
Q 008735 311 E--------------A-----------SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVID 365 (555)
Q Consensus 311 ~--------------~-----------~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId 365 (555)
. . .....+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 283 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~ 362 (715)
T 2va8_A 283 ENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIG 362 (715)
T ss_dssp HHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEEC
T ss_pred hHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEe
Confidence 0 0 00134889999999999999999999999999999999999999999999998
Q ss_pred CCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEccChhh-Hhc-cc--CCCCCcccccCchH---
Q 008735 366 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENE-FDK-LE--DSTKPEIKRCNLSN--- 435 (555)
Q Consensus 366 ~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~-~~~-~~--~~~~pei~~~~l~~--- 435 (555)
+ ...||+..+.. ..|.|.++|.||+|||||.| +|.||+++++.+ +.. +. ....|++.++++..
T Consensus 363 ~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~ 435 (715)
T 2va8_A 363 D----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERA 435 (715)
T ss_dssp C----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHH
T ss_pred C----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhH
Confidence 4 56688554432 36999999999999999999 899999997665 322 11 13567888877665
Q ss_pred ---HHHHHhhcCCC----CccC---CcCCC-CCcHHHHHHHHHHHHHcCCccCCC---CCCHHHHhhcccCCCChHHHHH
Q 008735 436 ---VILQLKALGVD----DIIG---FDFME-KPSRASIIKSLEQLFLLGALTDDC---KLSDPVGHQMARLPLDPIYSKA 501 (555)
Q Consensus 436 ---~~l~l~~~~~~----~~~~---~~~~~-~p~~~~~~~al~~L~~~g~l~~~~---~~T~~lG~~~~~~~~~~~~~~~ 501 (555)
.++.++..|.- ++.. ..|+. +|+...+..|++.|.++|+|+.++ .+|+ +|+.++++|++|.++++
T Consensus 436 l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~-lG~~~~~~~~~~~~~~~ 514 (715)
T 2va8_A 436 FYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTN-FGKRVADLYINPFTADI 514 (715)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECH-HHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeCh-HHHHHHHHcCCHhHHHH
Confidence 66777776632 2222 13443 455667999999999999998764 7997 99999999999999999
Q ss_pred HHHhhhc---CCHHHHHHHHHhhc-CCCcccCChhhHHHHH
Q 008735 502 LIVAGQF---NCLEEMLITVAMLS-VESIFFRSPGEVRRGK 538 (555)
Q Consensus 502 l~~~~~~---~~~~~~l~i~a~~~-~~~~~~~~~~~~~~~~ 538 (555)
++.+... .|..+++.|+|+.+ ++++|.++.+.....+
T Consensus 515 ~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~ 555 (715)
T 2va8_A 515 IRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIE 555 (715)
T ss_dssp HHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHH
T ss_pred HHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHH
Confidence 9999887 89999999888776 4788888876655444
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.5e-52 Score=462.06 Aligned_cols=444 Identities=19% Similarity=0.192 Sum_probs=328.1
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRV 107 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~ 107 (555)
++.+.+.++..++-.++++|+++++.+.++++++++||||||||++++++++.... .+.++++++|+++++.++.+++
T Consensus 11 ~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~--~~~~~l~i~P~r~La~q~~~~~ 88 (702)
T 2p6r_A 11 SSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI--KGGKSLYVVPLRALAGEKYESF 88 (702)
T ss_dssp HHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH--hCCcEEEEeCcHHHHHHHHHHH
Confidence 34566777777777999999999999999999999999999999999888876533 2567999999999999999988
Q ss_pred HHHh--CCccCCEEEEEEecCCC-------CCchhhHHHhhc-CC-CCCCCceeEeecccc-----cccchhHHHHHHHH
Q 008735 108 AEES--GVELGQRVGYSIRFDDR-------TSTSTRIKEALL-DP-YLSRYSAIIVDEAHE-----RTVHTDVLLGLLKK 171 (555)
Q Consensus 108 ~~~~--~~~~~~~vg~~~~~~~~-------~~~~~~i~~~~~-~~-~l~~~~~iIiDE~He-----~~~~~d~ll~~l~~ 171 (555)
.... +..++..+|+....... +.+..++..++. ++ .++++++||+||+|+ |+...+.++..+++
T Consensus 89 ~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~ 168 (702)
T 2p6r_A 89 KKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR 168 (702)
T ss_dssp TTTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHh
Confidence 4221 22333333322222111 112233333332 33 378999999999997 44444444444432
Q ss_pred HHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhCCCCeEEeCCcc
Q 008735 172 VQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQ 250 (555)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~ 250 (555)
.+ +++|+|+||||+ +.+++++|++ .+.+...+++
T Consensus 169 ---~~-----------------------------------------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~ 203 (702)
T 2p6r_A 169 ---MN-----------------------------------------KALRVIGLSATAPNVTEIAEWLD-ADYYVSDWRP 203 (702)
T ss_dssp ---HC-----------------------------------------TTCEEEEEECCCTTHHHHHHHTT-CEEEECCCCS
T ss_pred ---cC-----------------------------------------cCceEEEECCCcCCHHHHHHHhC-CCcccCCCCC
Confidence 12 678999999999 5899999997 5677778888
Q ss_pred ccceEEEcCCCCCChHH---------HHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCC--------
Q 008735 251 FPVEILYTLYPEPDYLD---------ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEAS-------- 313 (555)
Q Consensus 251 ~~v~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~-------- 313 (555)
.++...+.......+.+ .....+.+... .++++||||+++++++.++..|.+.+.......
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~ 281 (702)
T 2p6r_A 204 VPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILE 281 (702)
T ss_dssp SCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHT
T ss_pred ccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHh
Confidence 88776543222110000 02222233222 478999999999999999999987643211000
Q ss_pred -------------CCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCc
Q 008735 314 -------------RKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGM 380 (555)
Q Consensus 314 -------------~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~ 380 (555)
.+..+..+||+|+.++|..+++.|++|.++|||||+++++|||+|++++||++ ...|| +.
T Consensus 282 ~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~ 354 (702)
T 2p6r_A 282 ENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY 354 (702)
T ss_dssp TCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS
T ss_pred hccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC
Confidence 01247789999999999999999999999999999999999999999999984 66787 21
Q ss_pred cccceeecCHHhHHHHhcccCCCC---CCEEEEccChhhHhccc---CCCCCcccccCchH------HHHHHhhcCCC-C
Q 008735 381 ESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEFDKLE---DSTKPEIKRCNLSN------VILQLKALGVD-D 447 (555)
Q Consensus 381 ~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~~~---~~~~pei~~~~l~~------~~l~l~~~~~~-~ 447 (555)
..|.|..+|.||+|||||.| +|.||+++++.+++.+. ....|++.++++.. .++.+...|.. +
T Consensus 355 ----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~ 430 (702)
T 2p6r_A 355 ----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKT 430 (702)
T ss_dssp ----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSS
T ss_pred ----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCC
Confidence 36999999999999999998 89999999988765422 24568888877664 56666666632 1
Q ss_pred ---ccCC---cCC----CCCcHHHHHHHHHHHHHcCCccCC--CCCCHHHHhhcccCCCChHHHHHHHHhhhc--CCHHH
Q 008735 448 ---IIGF---DFM----EKPSRASIIKSLEQLFLLGALTDD--CKLSDPVGHQMARLPLDPIYSKALIVAGQF--NCLEE 513 (555)
Q Consensus 448 ---~~~~---~~~----~~p~~~~~~~al~~L~~~g~l~~~--~~~T~~lG~~~~~~~~~~~~~~~l~~~~~~--~~~~~ 513 (555)
...+ .|+ .+|..+.+..|++.|.+.|+|+.+ +.+|+ +|+.++++|++|.++++++.+... .|..+
T Consensus 431 ~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~-lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (702)
T 2p6r_A 431 LEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTK-LGSLVSRLYIDPLTGFIFHDVLSRMELSDIG 509 (702)
T ss_dssp HHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECH-HHHHHHHTTCCHHHHHHHHHHTTTCCCCHHH
T ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccCh-HHHHHHHHhCCHHHHHHHHHHhhcccCCHHH
Confidence 1111 232 368889999999999999999876 68997 999999999999999999999988 89999
Q ss_pred HHHHHHhhcC-CCcccCChh
Q 008735 514 MLITVAMLSV-ESIFFRSPG 532 (555)
Q Consensus 514 ~l~i~a~~~~-~~~~~~~~~ 532 (555)
++.|+|+.+. .+++.++.+
T Consensus 510 ~l~~i~~~~e~~~i~~r~~e 529 (702)
T 2p6r_A 510 ALHLICRTPDMERLTVRKTD 529 (702)
T ss_dssp HHHHHHHSTTSCCCCCCTTT
T ss_pred HHHHhhCCcccccCCCCCch
Confidence 9998887775 578888876
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.4e-51 Score=455.38 Aligned_cols=452 Identities=15% Similarity=0.133 Sum_probs=322.2
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHH-HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~-i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
++.+.+.+...++..++++|.++++. +.++++++++||||||||++++++++..... .+.++++++|+++++.+++++
T Consensus 9 ~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~~l~i~P~raLa~q~~~~ 87 (720)
T 2zj8_A 9 DERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT-QGGKAVYIVPLKALAEEKFQE 87 (720)
T ss_dssp CHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH-HCSEEEEECSSGGGHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHHHHH
Confidence 55677888888888999999999998 8999999999999999998888887755432 256899999999999999999
Q ss_pred HHHHhCCccCCEEEEEEecCCC-----------CCchhhHHHhh-cCC-CCCCCceeEeecccccccchhHHHHHHHHHH
Q 008735 107 VAEESGVELGQRVGYSIRFDDR-----------TSTSTRIKEAL-LDP-YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 173 (555)
Q Consensus 107 ~~~~~~~~~~~~vg~~~~~~~~-----------~~~~~~i~~~~-~~~-~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~ 173 (555)
+.... ..+..++........ +.+..++..++ .++ .++++++||+||+|.
T Consensus 88 ~~~l~--~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~---------------- 149 (720)
T 2zj8_A 88 FQDWE--KIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL---------------- 149 (720)
T ss_dssp TGGGG--GGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG----------------
T ss_pred HHHHH--hcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc----------------
Confidence 85322 123344433221110 11222222222 233 378899999999993
Q ss_pred HhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhCCCCeEEeCCcccc
Q 008735 174 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFP 252 (555)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~ 252 (555)
+.+..++..++.++.++. .+.|+|+||||+ +.+++++|++. +.+....++.+
T Consensus 150 ----------------------l~~~~r~~~~~~ll~~l~----~~~~ii~lSATl~n~~~~~~~l~~-~~~~~~~rp~~ 202 (720)
T 2zj8_A 150 ----------------------IGSRDRGATLEVILAHML----GKAQIIGLSATIGNPEELAEWLNA-ELIVSDWRPVK 202 (720)
T ss_dssp ----------------------GGCTTTHHHHHHHHHHHB----TTBEEEEEECCCSCHHHHHHHTTE-EEEECCCCSSE
T ss_pred ----------------------cCCCcccHHHHHHHHHhh----cCCeEEEEcCCcCCHHHHHHHhCC-cccCCCCCCCc
Confidence 333344444444444444 368999999999 78999999963 45666666666
Q ss_pred ceEEEcCCCCCCh-------HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCC--------------
Q 008735 253 VEILYTLYPEPDY-------LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE-------------- 311 (555)
Q Consensus 253 v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~-------------- 311 (555)
+...+.......+ .......+.+... .++++||||+++++++.++..|.+.......
T Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i 280 (720)
T 2zj8_A 203 LRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSL 280 (720)
T ss_dssp EEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTS
T ss_pred ceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 6544321110000 0111222222222 3689999999999999999999875432100
Q ss_pred ----------CCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCcc
Q 008735 312 ----------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGME 381 (555)
Q Consensus 312 ----------~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~ 381 (555)
+.....+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+. ...|| ..|
T Consensus 281 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~----~~~yd-~~g-- 353 (720)
T 2zj8_A 281 EENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRD----IWRYS-DFG-- 353 (720)
T ss_dssp CSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECC----SEECC-SSS--
T ss_pred hcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcC----Ceeec-CCC--
Confidence 0001248999999999999999999999999999999999999999999999983 35566 222
Q ss_pred ccceeecCHHhHHHHhcccCCCC---CCEEEEccChhhHh----cccCCCCCccccc-----CchHHHHHHhhcCCC---
Q 008735 382 SLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEFD----KLEDSTKPEIKRC-----NLSNVILQLKALGVD--- 446 (555)
Q Consensus 382 ~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~----~~~~~~~pei~~~-----~l~~~~l~l~~~~~~--- 446 (555)
..|.|..+|.||+|||||.| +|.||.++++.+++ .+.....+++... .+...++.....|..
T Consensus 354 ---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~ 430 (720)
T 2zj8_A 354 ---MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTV 430 (720)
T ss_dssp ---CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSH
T ss_pred ---CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCH
Confidence 15899999999999999998 79999999876533 2333333333222 355556666665532
Q ss_pred -CccC---CcCC------CCCcHHHHHHHHHHHHHcCCcc-CCC---CCCHHHHhhcccCCCChHHHHHHHHhhhc----
Q 008735 447 -DIIG---FDFM------EKPSRASIIKSLEQLFLLGALT-DDC---KLSDPVGHQMARLPLDPIYSKALIVAGQF---- 508 (555)
Q Consensus 447 -~~~~---~~~~------~~p~~~~~~~al~~L~~~g~l~-~~~---~~T~~lG~~~~~~~~~~~~~~~l~~~~~~---- 508 (555)
++.. +.|+ +++..+.+..+++.|...|+|+ .++ .+|+ +|+.++++|++|.++++++.+...
T Consensus 431 ~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~-lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (720)
T 2zj8_A 431 EEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLS-LGIRTAKLYIDPYTAKMFKDKMEEVVKD 509 (720)
T ss_dssp HHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECH-HHHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeCh-HHHHHHHHcCCHHHHHHHHHHHHhhccC
Confidence 1111 1222 2334578999999999999998 655 6897 999999999999999999999887
Q ss_pred CCHHHHHHHHHhhcC-CCcccCChhhHHHHH
Q 008735 509 NCLEEMLITVAMLSV-ESIFFRSPGEVRRGK 538 (555)
Q Consensus 509 ~~~~~~l~i~a~~~~-~~~~~~~~~~~~~~~ 538 (555)
.|..+++.|+|+.+. ++.|.++.+.....+
T Consensus 510 ~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~ 540 (720)
T 2zj8_A 510 PNPIGIFHLISLTPDITPFNYSKREFERLEE 540 (720)
T ss_dssp CCHHHHHHHHHTSTTCCCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHhccCccccccccCHHHHHHHHH
Confidence 899999999999886 689998877655444
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.9e-43 Score=412.98 Aligned_cols=498 Identities=14% Similarity=0.116 Sum_probs=328.1
Q ss_pred cccCCCCCCCCCCCCCCCChh----HHHHHHHhhcCCCcHHHHHHHHHHHh-cCCeEEEEcCCCCchhhHHHHHHHhccc
Q 008735 9 VSNSTHNPKLHSKPFFNDSSS----RRQKILQQRKSLPIASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGF 83 (555)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~Q~~~i~~i~-~~~~~ii~apTGsGKT~~l~~~i~~~~~ 83 (555)
+....+.+..+...+..++.+ ...+.+-..++-.++++|.++++.+. .+++++|+||||||||+++.++++....
T Consensus 889 ~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~ 968 (1724)
T 4f92_B 889 ILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLL 968 (1724)
T ss_dssp CCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHH
Confidence 344444444444444333322 23333444456668999999999986 5678999999999999888888877655
Q ss_pred cCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEec-----------CCCCCchhhHHHhhc----CCCCCCCc
Q 008735 84 CRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRF-----------DDRTSTSTRIKEALL----DPYLSRYS 148 (555)
Q Consensus 84 ~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~-----------~~~~~~~~~i~~~~~----~~~l~~~~ 148 (555)
..++.+++++.|+++++.+....+.+.++...+..++...+. +..+.+..++..++. ...+++++
T Consensus 969 ~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~ 1048 (1724)
T 4f92_B 969 QSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNIN 1048 (1724)
T ss_dssp HCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCS
T ss_pred hCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceee
Confidence 555668999999999999999999888877677777644321 111223333333332 23477899
Q ss_pred eeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhcc---ccCCCCceEEEe
Q 008735 149 AIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQ---GRKFAPLKLIIM 225 (555)
Q Consensus 149 ~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~---~~~~~~~~ii~~ 225 (555)
+||+||+|..+- .++..++.++.++. .....++|+|+|
T Consensus 1049 lvViDE~H~l~d---------------------------------------~rg~~le~il~rl~~i~~~~~~~~riI~l 1089 (1724)
T 4f92_B 1049 LFVVDEVHLIGG---------------------------------------ENGPVLEVICSRMRYISSQIERPIRIVAL 1089 (1724)
T ss_dssp EEEECCGGGGGS---------------------------------------TTHHHHHHHHHHHHHHHHTTSSCCEEEEE
T ss_pred EEEeechhhcCC---------------------------------------CCCccHHHHHHHHHHHHhhcCCCceEEEE
Confidence 999999994221 22222222222221 111267899999
Q ss_pred ccCC-CHHHHHhhhCCCC--eEEeCC--ccccceEEEcCCCCCChHHHHH---HHH-HHHHhcCCCCcEEEEcCCHHHHH
Q 008735 226 SASL-DARGFSEYFGCAK--AVHVQG--RQFPVEILYTLYPEPDYLDATL---ITI-FQVHLDEAPGDILVFLTGQEEIE 296 (555)
Q Consensus 226 SAT~-~~~~~~~~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~iLVF~~t~~~~~ 296 (555)
|||+ |++++++|++..+ .+.+.. ++.|++.+.............. ..+ ..+......+++||||+|++.|+
T Consensus 1090 SATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~ 1169 (1724)
T 4f92_B 1090 SSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTR 1169 (1724)
T ss_dssp ESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHH
T ss_pred eCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHH
Confidence 9999 9999999998643 444443 4455555544444333322211 111 11223355789999999999999
Q ss_pred HHHHHHHHHhhcCCCC-------------------------CCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCcc
Q 008735 297 SVERLVQERLLQLPEA-------------------------SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIA 351 (555)
Q Consensus 297 ~l~~~L~~~~~~~~~~-------------------------~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~ 351 (555)
.++..|...+...... .....++.|||||++++|..+++.|++|.++|||||+++
T Consensus 1170 ~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tl 1249 (1724)
T 4f92_B 1170 LTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSL 1249 (1724)
T ss_dssp HHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGG
T ss_pred HHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHH
Confidence 9998887654321100 012358899999999999999999999999999999999
Q ss_pred ccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEccChhhHh---cccCCCC
Q 008735 352 ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEFD---KLEDSTK 425 (555)
Q Consensus 352 e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~---~~~~~~~ 425 (555)
++|||+|++.+||. ....||..... ..|.+..+|.||+|||||.| .|.|+.++.+.+.+ .+.....
T Consensus 1250 A~GVnlPa~~VVI~----~~~~~dg~~~~----~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~ 1321 (1724)
T 4f92_B 1250 CWGMNVAAHLVIIM----DTQYYNGKIHA----YVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPL 1321 (1724)
T ss_dssp SSSCCCCBSEEEEE----CSEEEETTTTE----EEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCB
T ss_pred HcCCCCCccEEEEe----cCccccCcccc----cCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCC
Confidence 99999999999996 45667754332 25899999999999999998 79999998655433 3322222
Q ss_pred C--cccccCchHHHHHHhhcCCC-Ccc------CCcCC---------------------CCCcHHHHHHHHHHHHHcCCc
Q 008735 426 P--EIKRCNLSNVILQLKALGVD-DII------GFDFM---------------------EKPSRASIIKSLEQLFLLGAL 475 (555)
Q Consensus 426 p--ei~~~~l~~~~l~l~~~~~~-~~~------~~~~~---------------------~~p~~~~~~~al~~L~~~g~l 475 (555)
| .-+...+.+.++.....|.- +.. ...|+ +....+.++++++.|++.|+|
T Consensus 1322 pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I 1401 (1724)
T 4f92_B 1322 PVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCI 1401 (1724)
T ss_dssp CCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred ceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCE
Confidence 2 12233455555555554421 110 00110 122345678899999999999
Q ss_pred c--CCC--CCCHHHHhhcccCCCChHHHHHHHHhhhcCC-HHHHHHHHHhhc-CCCcccCChhhH---HHHHHHhhhccC
Q 008735 476 T--DDC--KLSDPVGHQMARLPLDPIYSKALIVAGQFNC-LEEMLITVAMLS-VESIFFRSPGEV---RRGKKCNEIFCK 546 (555)
Q Consensus 476 ~--~~~--~~T~~lG~~~~~~~~~~~~~~~l~~~~~~~~-~~~~l~i~a~~~-~~~~~~~~~~~~---~~~~~~~~~~~~ 546 (555)
+ +++ ..|+ +|++++.++++|.+++++..++...+ +..+|.++|..+ ..+...++.+.. +.++..+-++..
T Consensus 1402 ~~~~~~~l~~T~-lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~ 1480 (1724)
T 4f92_B 1402 SIEDEMDVAPLN-LGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNN 1480 (1724)
T ss_dssp EEETTTEEEECH-HHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSS
T ss_pred EEcCCCCEeecH-HHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcCCcccccccccccHHHHHHHHHhhCCCCCCc
Confidence 5 334 4687 99999999999999999998876554 455666665443 356667776553 334444445566
Q ss_pred CCCCCCCC
Q 008735 547 SRWRSPHF 554 (555)
Q Consensus 547 ~~~~~~~~ 554 (555)
..|.+||+
T Consensus 1481 ~~~~~~~~ 1488 (1724)
T 4f92_B 1481 PKFNDPHV 1488 (1724)
T ss_dssp CCTTCHHH
T ss_pred cccCCHHH
Confidence 66666653
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5e-41 Score=396.61 Aligned_cols=447 Identities=15% Similarity=0.147 Sum_probs=297.2
Q ss_pred cCCCcHHHHHHHHHHHh-cCCeEEEEcCCCCchhhHHHHHHHhccc---------cCCCcEEEEeCccHHHHHHHHHHHH
Q 008735 39 KSLPIASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGF---------CRDGKLIGVTQPRRVAAVTVAKRVA 108 (555)
Q Consensus 39 ~~l~~~~~Q~~~i~~i~-~~~~~ii~apTGsGKT~~l~~~i~~~~~---------~~~~~~i~~~~P~r~l~~~~~~~~~ 108 (555)
++-.++++|.++++.+. ++++++|+||||||||.++.++++.... ...+.+++++.|+++|+.+....+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 45568899999999865 6899999999999999777666654322 1235689999999999999999988
Q ss_pred HHhCCccCCEEEEEEecCCC------------CCchhhHHHhhcC----CCCCCCceeEeecccccccchhHHHHHHHHH
Q 008735 109 EESGVELGQRVGYSIRFDDR------------TSTSTRIKEALLD----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 172 (555)
Q Consensus 109 ~~~~~~~~~~vg~~~~~~~~------------~~~~~~i~~~~~~----~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~ 172 (555)
+.++. .|..|+...+ +.. +++.+++..++.. ..++++++|||||+|..
T Consensus 156 ~~~~~-~gi~V~~~tG-d~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l-------------- 219 (1724)
T 4f92_B 156 KRLAT-YGITVAELTG-DHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLL-------------- 219 (1724)
T ss_dssp HHHTT-TTCCEEECCS-SCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGG--------------
T ss_pred HHHhh-CCCEEEEEEC-CCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhc--------------
Confidence 77652 3444543222 111 1223333333332 23678999999999921
Q ss_pred HHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccc---cCCCCceEEEeccCC-CHHHHHhhhCCCC---eEE
Q 008735 173 QNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQG---RKFAPLKLIIMSASL-DARGFSEYFGCAK---AVH 245 (555)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~---~~~~~~~ii~~SAT~-~~~~~~~~~~~~~---~~~ 245 (555)
+..+|..++.++.++.. ...+++|+|+||||+ |.+++++|++..+ ...
T Consensus 220 -------------------------~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~ 274 (1724)
T 4f92_B 220 -------------------------HDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFY 274 (1724)
T ss_dssp -------------------------GSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEE
T ss_pred -------------------------CCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEE
Confidence 11233333333332210 011788999999999 8999999998642 344
Q ss_pred eCCc--cccceEEEcCCCCCChHH---HHHHHHHHH-HhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCC--------
Q 008735 246 VQGR--QFPVEILYTLYPEPDYLD---ATLITIFQV-HLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE-------- 311 (555)
Q Consensus 246 ~~~~--~~~v~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~-------- 311 (555)
+... +.|++..+.......... .....+... .....++++||||+||+.|+.+|+.|.+.+.....
T Consensus 275 ~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~ 354 (1724)
T 4f92_B 275 FDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREG 354 (1724)
T ss_dssp CCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCC
T ss_pred ECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccc
Confidence 4444 344444443333332221 111122222 22334678999999999999999999876432110
Q ss_pred --------------------CCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccc
Q 008735 312 --------------------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 371 (555)
Q Consensus 312 --------------------~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~ 371 (555)
+.....++.|||||+.++|..+++.|++|.++|||||+++++|||+|++++||. ..
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~----~~ 430 (1724)
T 4f92_B 355 SASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIK----GT 430 (1724)
T ss_dssp TTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEE----CC
T ss_pred hhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEe----CC
Confidence 011235889999999999999999999999999999999999999999999997 56
Q ss_pred eeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEccChhhH---hcccCCCCC--cccccCchHHHHHHhhc
Q 008735 372 RLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEF---DKLEDSTKP--EIKRCNLSNVILQLKAL 443 (555)
Q Consensus 372 ~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~---~~~~~~~~p--ei~~~~l~~~~l~l~~~ 443 (555)
..||+..|.. .|.+..+|.||+|||||.| .|.++.+.+.++. ..+.....| .-....+.+.+++...+
T Consensus 431 ~~~~~~~~~~----~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~ 506 (1724)
T 4f92_B 431 QVYSPEKGRW----TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVL 506 (1724)
T ss_dssp EEEETTTTEE----EECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHH
T ss_pred EEecCcCCCc----ccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHH
Confidence 7788876633 5899999999999999998 7999999865543 222222222 11223444444444433
Q ss_pred CC-CCccC------------------------------CcCCCCCcHHHHHHHHHHHHHcCCccC---CC--CCCHHHHh
Q 008735 444 GV-DDIIG------------------------------FDFMEKPSRASIIKSLEQLFLLGALTD---DC--KLSDPVGH 487 (555)
Q Consensus 444 ~~-~~~~~------------------------------~~~~~~p~~~~~~~al~~L~~~g~l~~---~~--~~T~~lG~ 487 (555)
|. .+..+ .+.++....+.+..++..|.+.|+|.. ++ ..|+ +|+
T Consensus 507 g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~-lGr 585 (1724)
T 4f92_B 507 GNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTE-LGR 585 (1724)
T ss_dssp TSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECH-HHH
T ss_pred hhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccch-HHH
Confidence 32 11100 011122234567899999999999942 22 5798 999
Q ss_pred hcccCCCChHHHHHHHHhhhcCCH-HHHHHHHHhhcC-CCcccCChhhHH
Q 008735 488 QMARLPLDPIYSKALIVAGQFNCL-EEMLITVAMLSV-ESIFFRSPGEVR 535 (555)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~i~a~~~~-~~~~~~~~~~~~ 535 (555)
+++++|++|.+++.+.......+. .+++.+.|..+. .++..+..+..+
T Consensus 586 ~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~ 635 (1724)
T 4f92_B 586 IASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLE 635 (1724)
T ss_dssp HHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHH
T ss_pred HHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHHHHH
Confidence 999999999999999988765544 456666665554 345555554443
No 7
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.9e-40 Score=342.59 Aligned_cols=321 Identities=17% Similarity=0.195 Sum_probs=232.5
Q ss_pred CCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccc------cCCCcEEEEeC
Q 008735 22 PFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF------CRDGKLIGVTQ 94 (555)
Q Consensus 22 ~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~------~~~~~~i~~~~ 94 (555)
.|..+. ++.+.+.+...++-.++++|+++++.+.+|++++++||||||||..+...++.... ...+.+++++.
T Consensus 57 ~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~ 136 (434)
T 2db3_A 57 HFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVS 136 (434)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEe
Confidence 343333 56788888889999999999999999999999999999999999544444433221 12355799999
Q ss_pred ccHHHHHHHHHHHHHHhCCccCCEEEEEEec--------------CCCCCchhhHHHhhcC--CCCCCCceeEeeccccc
Q 008735 95 PRRVAAVTVAKRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHER 158 (555)
Q Consensus 95 P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~ 158 (555)
|+++++.|+.+.+.+.... .+..++..... +..+.+..++..++.. ..+++++++|+||||
T Consensus 137 PtreLa~Q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-- 213 (434)
T 2db3_A 137 PTRELAIQIFNEARKFAFE-SYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD-- 213 (434)
T ss_dssp SSHHHHHHHHHHHHHHTTT-SSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH--
T ss_pred cCHHHHHHHHHHHHHHhcc-CCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh--
Confidence 9999999999988776532 12222211111 1112233344444432 247889999999998
Q ss_pred ccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH--HHH-
Q 008735 159 TVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS- 235 (555)
Q Consensus 159 ~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--~~~- 235 (555)
.|++.++...+..++..+.. .++.|+++||||++.+ .+.
T Consensus 214 ------------------------------------~~~~~gf~~~~~~i~~~~~~--~~~~q~l~~SAT~~~~~~~~~~ 255 (434)
T 2db3_A 214 ------------------------------------RMLDMGFSEDMRRIMTHVTM--RPEHQTLMFSATFPEEIQRMAG 255 (434)
T ss_dssp ------------------------------------HHTSTTTHHHHHHHHHCTTS--CSSCEEEEEESCCCHHHHHHHH
T ss_pred ------------------------------------hhhccCcHHHHHHHHHhcCC--CCCceEEEEeccCCHHHHHHHH
Confidence 46666666666666655432 1678999999999653 333
Q ss_pred hhhCCCCeEEeCCc---cccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCC
Q 008735 236 EYFGCAKAVHVQGR---QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA 312 (555)
Q Consensus 236 ~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~ 312 (555)
.++.+...+.+... ...+...+........... +..+.... .+++||||+++++++.+++.|.+.
T Consensus 256 ~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~----l~~~l~~~-~~~~lVF~~t~~~a~~l~~~L~~~------- 323 (434)
T 2db3_A 256 EFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSK----LIEILSEQ-ADGTIVFVETKRGADFLASFLSEK------- 323 (434)
T ss_dssp TTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHH----HHHHHHHC-CTTEEEECSSHHHHHHHHHHHHHT-------
T ss_pred HhccCCEEEEeccccccccccceEEEEeCcHHHHHH----HHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhC-------
Confidence 55554444444321 2233333333333333332 33333333 334999999999999999999886
Q ss_pred CCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHh
Q 008735 313 SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQ 392 (555)
Q Consensus 313 ~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~ 392 (555)
++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+
T Consensus 324 --~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~--------~d----------~p~~~~~ 383 (434)
T 2db3_A 324 --EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN--------YD----------MPSKIDD 383 (434)
T ss_dssp --TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE--------SS----------CCSSHHH
T ss_pred --CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE--------EC----------CCCCHHH
Confidence 788999999999999999999999999999999999999999999999999 77 6889999
Q ss_pred HHHHhcccCCCC-CCEEEEccChh
Q 008735 393 ALQRSGRAGREG-PGKCFRLYPEN 415 (555)
Q Consensus 393 ~~Qr~GRaGR~~-~G~~~~l~~~~ 415 (555)
|+||+|||||.| .|.|+.+++++
T Consensus 384 y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 384 YVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp HHHHHTTSSCTTCCEEEEEEECTT
T ss_pred HHHHhcccccCCCCCEEEEEEecc
Confidence 999999999999 99999999854
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.7e-39 Score=338.13 Aligned_cols=339 Identities=13% Similarity=0.163 Sum_probs=236.5
Q ss_pred CCCCCCCCCCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcC--CeEEEEcCCCCchhhHHHHHHHhcccc-CCCc
Q 008735 13 THNPKLHSKPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFC-RDGK 88 (555)
Q Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~--~~~ii~apTGsGKT~~l~~~i~~~~~~-~~~~ 88 (555)
...+......|..+. ++.+.+.+...++..++++|.++++.+.++ +++++++|||||||.++..+++..... ..+.
T Consensus 17 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~ 96 (412)
T 3fht_A 17 PNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP 96 (412)
T ss_dssp TTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSC
T ss_pred CCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCC
Confidence 334445566676654 667888888899999999999999999987 999999999999997766666654433 2345
Q ss_pred EEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCC-----------CCchhhHHHhhcC---CCCCCCceeEeec
Q 008735 89 LIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDR-----------TSTSTRIKEALLD---PYLSRYSAIIVDE 154 (555)
Q Consensus 89 ~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~-----------~~~~~~i~~~~~~---~~l~~~~~iIiDE 154 (555)
+++++.|+++++.|+.+.+.+......+..+++....... +.+...+..++.. ..+.++++||+||
T Consensus 97 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDE 176 (412)
T 3fht_A 97 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 176 (412)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEET
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeC
Confidence 7999999999999999888777654334445544432211 1222333343322 2357899999999
Q ss_pred ccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH--
Q 008735 155 AHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR-- 232 (555)
Q Consensus 155 ~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~-- 232 (555)
+|+...... +......+...+. .+.++++||||++..
T Consensus 177 ah~~~~~~~-------------------------------------~~~~~~~~~~~~~----~~~~~i~~SAT~~~~~~ 215 (412)
T 3fht_A 177 ADVMIATQG-------------------------------------HQDQSIRIQRMLP----RNCQMLLFSATFEDSVW 215 (412)
T ss_dssp HHHHHSTTT-------------------------------------THHHHHHHHHTSC----TTCEEEEEESCCCHHHH
T ss_pred HHHHhhcCC-------------------------------------cHHHHHHHHhhCC----CCceEEEEEeecCHHHH
Confidence 995322111 1111111111111 678999999999654
Q ss_pred HH-HhhhCCCCeEEeCCcc---ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhc
Q 008735 233 GF-SEYFGCAKAVHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQ 308 (555)
Q Consensus 233 ~~-~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~ 308 (555)
.+ ..++.+...+.+.... ..+...+..... .......+..+......+++||||+++++++.+++.|.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--- 289 (412)
T 3fht_A 216 KFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS---RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE--- 289 (412)
T ss_dssp HHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSS---HHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT---
T ss_pred HHHHHhcCCCeEEeeccccccccCceEEEEEcCC---hHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC---
Confidence 33 3555544444433222 122223322222 2233344444444445789999999999999999999886
Q ss_pred CCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeec
Q 008735 309 LPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPI 388 (555)
Q Consensus 309 ~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~ 388 (555)
++.+..+||+|+.++|.++++.|++|+.+|||||+++++|+|+|++++||+ ||...... .+.
T Consensus 290 ------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~--------~~~p~~~~----~~~ 351 (412)
T 3fht_A 290 ------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN--------FDLPVDKD----GNP 351 (412)
T ss_dssp ------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE--------SSCCBCSS----SSB
T ss_pred ------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE--------ECCCCCCC----CCc
Confidence 778999999999999999999999999999999999999999999999999 55211100 126
Q ss_pred CHHhHHHHhcccCCCC-CCEEEEccChhh
Q 008735 389 SKAQALQRSGRAGREG-PGKCFRLYPENE 416 (555)
Q Consensus 389 s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 416 (555)
+..+|+||+|||||.| .|.|+.+++..+
T Consensus 352 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 352 DNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp CHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred chheeecccCcccCCCCCceEEEEEcChh
Confidence 8899999999999998 799999997554
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=346.16 Aligned_cols=325 Identities=16% Similarity=0.237 Sum_probs=220.3
Q ss_pred CCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccC-CCcEEEEeCccHHH
Q 008735 22 PFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVA 99 (555)
Q Consensus 22 ~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~-~~~~i~~~~P~r~l 99 (555)
+|..+. ++.+.+.+...++..++++|+++++.+.+|+++++.+|||||||+++..+++...... .+.+++++.|++.+
T Consensus 41 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 120 (414)
T 3eiq_A 41 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTREL 120 (414)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred CHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHH
Confidence 343433 5567888888999999999999999999999999999999999988777777654332 45679999999999
Q ss_pred HHHHHHHHHHHhCCccCCEEEEEEecC---------------CCCCchhhHHHhhcC--CCCCCCceeEeecccccccch
Q 008735 100 AVTVAKRVAEESGVELGQRVGYSIRFD---------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHT 162 (555)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~vg~~~~~~---------------~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~ 162 (555)
+.|+.+.+..... ..+..++...... ..+.+..++...+.. ..+..+++||+||||+.
T Consensus 121 ~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~---- 195 (414)
T 3eiq_A 121 AQQIQKVVMALGD-YMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM---- 195 (414)
T ss_dssp HHHHHHHHHHHGG-GSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHH----
T ss_pred HHHHHHHHHHHhc-ccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHh----
Confidence 9999998877653 2233333222111 111222222223222 23677999999999942
Q ss_pred hHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHH---HhhhC
Q 008735 163 DVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGF---SEYFG 239 (555)
Q Consensus 163 d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~---~~~~~ 239 (555)
.+.++...+..++..+. ++.++++||||++.+.. ..++.
T Consensus 196 ----------------------------------~~~~~~~~~~~~~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~ 237 (414)
T 3eiq_A 196 ----------------------------------LSRGFKDQIYDIFQKLN----SNTQVVLLSATMPSDVLEVTKKFMR 237 (414)
T ss_dssp ----------------------------------HHTTTHHHHHHHHTTSC----TTCEEEEECSCCCHHHHHHHTTTCS
T ss_pred ----------------------------------hccCcHHHHHHHHHhCC----CCCeEEEEEEecCHHHHHHHHHHcC
Confidence 22222222223333332 67899999999965433 34554
Q ss_pred CCCeEEeCCcc---ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCe
Q 008735 240 CAKAVHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 316 (555)
Q Consensus 240 ~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~ 316 (555)
+...+.+.... ..+...+......+. ....+..+......+++||||+++++++.+++.|.+. ++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~ 305 (414)
T 3eiq_A 238 DPIRILVKKEELTLEGIRQFYINVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR---------DF 305 (414)
T ss_dssp SCEEECCCCCCCCTTSCCEEEEECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT---------TC
T ss_pred CCEEEEecCCccCCCCceEEEEEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc---------CC
Confidence 44333333222 122333333333332 2333444555556789999999999999999999875 78
Q ss_pred EEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHH
Q 008735 317 VTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQR 396 (555)
Q Consensus 317 ~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr 396 (555)
.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||
T Consensus 306 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~--------~~----------~p~s~~~~~Qr 367 (414)
T 3eiq_A 306 TVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--------YD----------LPTNRENYIHR 367 (414)
T ss_dssp CCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE--------SS----------CCSSTHHHHHH
T ss_pred eEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE--------eC----------CCCCHHHhhhh
Confidence 8999999999999999999999999999999999999999999999999 66 57899999999
Q ss_pred hcccCCCC-CCEEEEccChhhHhc
Q 008735 397 SGRAGREG-PGKCFRLYPENEFDK 419 (555)
Q Consensus 397 ~GRaGR~~-~G~~~~l~~~~~~~~ 419 (555)
+|||||.| +|.|+.++++++...
T Consensus 368 ~GR~gR~g~~g~~~~~~~~~~~~~ 391 (414)
T 3eiq_A 368 IGRGGRFGRKGVAINMVTEEDKRT 391 (414)
T ss_dssp SCCC-------CEEEEECSTHHHH
T ss_pred cCcccCCCCCceEEEEEcHHHHHH
Confidence 99999998 899999998776643
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.9e-38 Score=328.07 Aligned_cols=330 Identities=16% Similarity=0.174 Sum_probs=230.6
Q ss_pred CCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcC--CeEEEEcCCCCchhhHHHHHHHhccccC-CCcEEEEeCcc
Q 008735 21 KPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPR 96 (555)
Q Consensus 21 ~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~--~~~ii~apTGsGKT~~l~~~i~~~~~~~-~~~~i~~~~P~ 96 (555)
++|..+. ++.+.+.+...++..++++|.++++.+..+ +++++++|||||||.++..+++...... .+.+++++.|+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 84 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPS 84 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCC
Confidence 4455554 667888888899999999999999999998 9999999999999977776666554332 35679999999
Q ss_pred HHHHHHHHHHHHHHhCCccCCEEEEEEecC----------CCCCchhhHHHhhcC--CCCCCCceeEeecccccccchhH
Q 008735 97 RVAAVTVAKRVAEESGVELGQRVGYSIRFD----------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDV 164 (555)
Q Consensus 97 r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~----------~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ 164 (555)
+.++.|+.+.+.+.... .+..++...... ..+.+...+...+.. ..+.++++||+||||+.......
T Consensus 85 ~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 163 (395)
T 3pey_A 85 RELARQTLEVVQEMGKF-TKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGL 163 (395)
T ss_dssp HHHHHHHHHHHHHHTTT-SCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTH
T ss_pred HHHHHHHHHHHHHHhcc-cCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCcccc
Confidence 99999999988775432 222222222111 111222333333322 24778999999999964332221
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCH--HHHH-hhhCCC
Q 008735 165 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFGCA 241 (555)
Q Consensus 165 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~--~~~~-~~~~~~ 241 (555)
. ..+..+... + ..+.++++||||++. ..+. .++...
T Consensus 164 ~-~~~~~~~~~------------------------------------~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 202 (395)
T 3pey_A 164 G-DQCIRVKRF------------------------------------L----PKDTQLVLFSATFADAVRQYAKKIVPNA 202 (395)
T ss_dssp H-HHHHHHHHT------------------------------------S----CTTCEEEEEESCCCHHHHHHHHHHSCSC
T ss_pred H-HHHHHHHHh------------------------------------C----CCCcEEEEEEecCCHHHHHHHHHhCCCC
Confidence 1 111111111 1 156899999999965 3333 444444
Q ss_pred CeEEeCCcccc---ceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q 008735 242 KAVHVQGRQFP---VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVT 318 (555)
Q Consensus 242 ~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v 318 (555)
..+........ +...+.... ........+..+......+++||||+++++++.+++.|.+. +..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~ 270 (395)
T 3pey_A 203 NTLELQTNEVNVDAIKQLYMDCK---NEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE---------GHEV 270 (395)
T ss_dssp EEECCCGGGCSCTTEEEEEEECS---SHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT---------TCCC
T ss_pred eEEEccccccccccccEEEEEcC---chHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc---------CCcE
Confidence 33333322221 222222221 22333444455555556789999999999999999999886 7789
Q ss_pred EEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhc
Q 008735 319 VPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSG 398 (555)
Q Consensus 319 ~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~G 398 (555)
..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+ ||.... ...+.+..+|+||+|
T Consensus 271 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~--------~~~p~~----~~~~~s~~~~~Qr~G 338 (395)
T 3pey_A 271 SILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN--------YDLPTL----ANGQADPATYIHRIG 338 (395)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE--------SSCCBC----TTSSBCHHHHHHHHT
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE--------cCCCCC----CcCCCCHHHhhHhcc
Confidence 99999999999999999999999999999999999999999999999 663211 112459999999999
Q ss_pred ccCCCC-CCEEEEccChhh
Q 008735 399 RAGREG-PGKCFRLYPENE 416 (555)
Q Consensus 399 RaGR~~-~G~~~~l~~~~~ 416 (555)
||||.| .|.|+.++...+
T Consensus 339 R~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 339 RTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp TSSCTTCCEEEEEEECSHH
T ss_pred ccccCCCCceEEEEEechH
Confidence 999999 799999997543
No 11
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.9e-39 Score=335.34 Aligned_cols=328 Identities=17% Similarity=0.188 Sum_probs=225.9
Q ss_pred CCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccc-----------------
Q 008735 22 PFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF----------------- 83 (555)
Q Consensus 22 ~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~----------------- 83 (555)
.|..+. ++.+.+.+...++..++++|+++++.+.+|+++++++|||||||..+..+++....
T Consensus 16 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (417)
T 2i4i_A 16 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRY 95 (417)
T ss_dssp SGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTT
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccc
Confidence 354443 66788889999999999999999999999999999999999999644444432211
Q ss_pred --cCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecC--------------CCCCchhhHHHhhcC--CCCC
Q 008735 84 --CRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLS 145 (555)
Q Consensus 84 --~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~~~~--~~l~ 145 (555)
...+.+++++.|+++++.|+.+.+.+.... .+..++...... ..+.+..++...+.. ..+.
T Consensus 96 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~ 174 (417)
T 2i4i_A 96 GRRKQYPISLVLAPTRELAVQIYEEARKFSYR-SRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLD 174 (417)
T ss_dssp BSCSBCCSEEEECSSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCT
T ss_pred ccccCCccEEEECCcHHHHHHHHHHHHHHhCc-CCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChh
Confidence 111246999999999999999988776542 222232221111 112223333333332 2377
Q ss_pred CCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEe
Q 008735 146 RYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIM 225 (555)
Q Consensus 146 ~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~ 225 (555)
++++||+||+|+ +++.++...+..++...........++++|
T Consensus 175 ~~~~iViDEah~--------------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 216 (417)
T 2i4i_A 175 FCKYLVLDEADR--------------------------------------MLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 216 (417)
T ss_dssp TCCEEEESSHHH--------------------------------------HHHTTCHHHHHHHHTSSSCCCBTTBEEEEE
T ss_pred hCcEEEEEChhH--------------------------------------hhccCcHHHHHHHHHhccCCCcCCcEEEEE
Confidence 899999999994 222233333333333221111146799999
Q ss_pred ccCCCHH--HHH-hhhCCCCeEEeCCc---cccceEEEcCCCCCChHHHHHHHHHHHHhc-CCCCcEEEEcCCHHHHHHH
Q 008735 226 SASLDAR--GFS-EYFGCAKAVHVQGR---QFPVEILYTLYPEPDYLDATLITIFQVHLD-EAPGDILVFLTGQEEIESV 298 (555)
Q Consensus 226 SAT~~~~--~~~-~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iLVF~~t~~~~~~l 298 (555)
|||++.+ .+. .++++...+.+... ...+...+......+... .+..+... ..++++||||+++++++.+
T Consensus 217 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~lVf~~~~~~~~~l 292 (417)
T 2i4i_A 217 SATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRS----FLLDLLNATGKDSLTLVFVETKKGADSL 292 (417)
T ss_dssp ESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHH----HHHHHHHTCCTTCEEEEECSSHHHHHHH
T ss_pred EEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHH----HHHHHHHhcCCCCeEEEEECCHHHHHHH
Confidence 9999643 333 55554433333221 112233333222222222 22233322 2467899999999999999
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCC
Q 008735 299 ERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVK 378 (555)
Q Consensus 299 ~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~ 378 (555)
++.|.+. ++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+ ||
T Consensus 293 ~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~--------~~--- 352 (417)
T 2i4i_A 293 EDFLYHE---------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FD--- 352 (417)
T ss_dssp HHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE--------SS---
T ss_pred HHHHHHC---------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------Ec---
Confidence 9999885 788999999999999999999999999999999999999999999999999 77
Q ss_pred CccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhhHhc
Q 008735 379 GMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFDK 419 (555)
Q Consensus 379 ~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~~ 419 (555)
.|.+..+|+||+|||||.| .|.|+.++++.+...
T Consensus 353 -------~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 353 -------LPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp -------CCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGG
T ss_pred -------CCCCHHHHHHhcCccccCCCCceEEEEEccccHHH
Confidence 5889999999999999998 899999999877643
No 12
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.2e-38 Score=341.53 Aligned_cols=338 Identities=16% Similarity=0.132 Sum_probs=229.4
Q ss_pred cccccccCCCCCCCCCCCCCCCC-hhHHHHHHHh-hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcc
Q 008735 5 AEGEVSNSTHNPKLHSKPFFNDS-SSRRQKILQQ-RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 82 (555)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~ 82 (555)
.+++-.+...+.....+.+..++ ++.+.+.++. .++-.++++|+++++.+.+|+++++++|||+|||....++++..
T Consensus 5 ~~~~~~~~~~~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~- 83 (591)
T 2v1x_A 5 DSDAGASNEYDSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS- 83 (591)
T ss_dssp -----------CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-
T ss_pred cccccccCCCCcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-
Confidence 33333333333344444444444 5667777776 47778999999999999999999999999999995444444332
Q ss_pred ccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecC--------------------CCCCchhhH------H
Q 008735 83 FCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFD--------------------DRTSTSTRI------K 136 (555)
Q Consensus 83 ~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~--------------------~~~~~~~~i------~ 136 (555)
+..++++.|++.++.++.+.+... +.. +++..... ....++.++ .
T Consensus 84 ----~g~~lVisP~~~L~~q~~~~l~~~-gi~----~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~ 154 (591)
T 2v1x_A 84 ----DGFTLVICPLISLMEDQLMVLKQL-GIS----ATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFM 154 (591)
T ss_dssp ----SSEEEEECSCHHHHHHHHHHHHHH-TCC----EEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHH
T ss_pred ----CCcEEEEeCHHHHHHHHHHHHHhc-CCc----EEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHH
Confidence 347999999999999999888765 322 22111100 000111111 0
Q ss_pred Hhhc-CCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccc--hhhhcc
Q 008735 137 EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGIN--TLKQCQ 213 (555)
Q Consensus 137 ~~~~-~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~--~l~~~~ 213 (555)
..+. ...+.++++|||||||+...+.. .|.+.+.. .+....
T Consensus 155 ~~l~~~~~~~~i~~iViDEAH~is~~g~------------------------------------dfr~~~~~l~~l~~~~ 198 (591)
T 2v1x_A 155 SRLEKAYEARRFTRIAVDEVHCCSQWGH------------------------------------DFRPDYKALGILKRQF 198 (591)
T ss_dssp HHHHHHHHTTCEEEEEEETGGGGSTTCT------------------------------------TCCGGGGGGGHHHHHC
T ss_pred HHHHhhhhccCCcEEEEECccccccccc------------------------------------ccHHHHHHHHHHHHhC
Confidence 1111 11256789999999996332110 01122111 111111
Q ss_pred ccCCCCceEEEeccCCCHH---HHHhhhCCCCeEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHhc-CCCCcEEEEc
Q 008735 214 GRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLD-EAPGDILVFL 289 (555)
Q Consensus 214 ~~~~~~~~ii~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iLVF~ 289 (555)
++.++++||||++.. ++.++++......+..........|............+..+...... ..++++||||
T Consensus 199 ----~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~ 274 (591)
T 2v1x_A 199 ----PNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYC 274 (591)
T ss_dssp ----TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEEC
T ss_pred ----CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEe
Confidence 678999999999764 45677765544444333333333443333333334445555555443 3567899999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcc
Q 008735 290 TGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFV 369 (555)
Q Consensus 290 ~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~ 369 (555)
+|+++++.+++.|.+. ++.+..+||+|+.++|.++++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 275 ~sr~~~e~la~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~---- 341 (591)
T 2v1x_A 275 FSQKDSEQVTVSLQNL---------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH---- 341 (591)
T ss_dssp SSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE----
T ss_pred CcHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE----
Confidence 9999999999999886 888999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhhHhc
Q 008735 370 KARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFDK 419 (555)
Q Consensus 370 ~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~~ 419 (555)
|| .|.|..+|+||+|||||.| +|.|+.+|+..+...
T Consensus 342 ----~~----------~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~ 378 (591)
T 2v1x_A 342 ----HS----------MSKSMENYYQESGRAGRDDMKADCILYYGFGDIFR 378 (591)
T ss_dssp ----SS----------CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred ----eC----------CCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHH
Confidence 77 6889999999999999999 999999999877654
No 13
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=5.3e-39 Score=334.44 Aligned_cols=318 Identities=14% Similarity=0.248 Sum_probs=227.6
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc-CCCcEEEEeCccHHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~-~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
++.+.+.+...++..++++|+++++.+.+|+++++++|||||||.++..+++..... ..+.+++++.|+++++.|+.+.
T Consensus 45 ~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 124 (410)
T 2j0s_A 45 REDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKG 124 (410)
T ss_dssp CHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHH
Confidence 566778888889999999999999999999999999999999997766666654332 2456899999999999999998
Q ss_pred HHHHhCCccCCEEEEEEecC--------------CCCCchhhHHHhhcC--CCCCCCceeEeecccccccchhHHHHHHH
Q 008735 107 VAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLK 170 (555)
Q Consensus 107 ~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ll~~l~ 170 (555)
+..... ..+..++...... ..+.+..++...+.. ..+.++++||+||+|+
T Consensus 125 ~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~------------- 190 (410)
T 2j0s_A 125 LLALGD-YMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE------------- 190 (410)
T ss_dssp HHHHTT-TTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-------------
T ss_pred HHHHhc-cCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH-------------
Confidence 876543 2233333222111 111222333333332 3367799999999994
Q ss_pred HHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHH---HhhhCCCCeEEeC
Q 008735 171 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGF---SEYFGCAKAVHVQ 247 (555)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~---~~~~~~~~~~~~~ 247 (555)
+++.++...+..++..+. ++.++++||||++.+.. ..++.++..+.+.
T Consensus 191 -------------------------~~~~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (410)
T 2j0s_A 191 -------------------------MLNKGFKEQIYDVYRYLP----PATQVVLISATLPHEILEMTNKFMTDPIRILVK 241 (410)
T ss_dssp -------------------------HTSTTTHHHHHHHHTTSC----TTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC
T ss_pred -------------------------HHhhhhHHHHHHHHHhCc----cCceEEEEEcCCCHHHHHHHHHHcCCCEEEEec
Confidence 222222222222222222 67899999999966432 2445443333332
Q ss_pred Ccc---ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCC
Q 008735 248 GRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 324 (555)
Q Consensus 248 ~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~ 324 (555)
... ..+...+......+.... .+..+......+++||||+++++++.+++.|.+. ++.+..+||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~k~~---~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~ 309 (410)
T 2j0s_A 242 RDELTLEGIKQFFVAVEREEWKFD---TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGD 309 (410)
T ss_dssp GGGCSCTTEEEEEEEESSTTHHHH---HHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTT
T ss_pred CccccCCCceEEEEEeCcHHhHHH---HHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC---------CCceEEeeCC
Confidence 221 222333333333332222 2233333334678999999999999999999886 7889999999
Q ss_pred CCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC
Q 008735 325 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 404 (555)
Q Consensus 325 l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~ 404 (555)
++.++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.|
T Consensus 310 ~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~--------~~----------~p~s~~~~~Qr~GR~gR~g 371 (410)
T 2j0s_A 310 MPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN--------YD----------LPNNRELYIHRIGRSGRYG 371 (410)
T ss_dssp SCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE--------SS----------CCSSHHHHHHHHTTSSGGG
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE--------EC----------CCCCHHHHHHhcccccCCC
Confidence 99999999999999999999999999999999999999999 77 5889999999999999998
Q ss_pred -CCEEEEccChhhHh
Q 008735 405 -PGKCFRLYPENEFD 418 (555)
Q Consensus 405 -~G~~~~l~~~~~~~ 418 (555)
+|.|+.++++++..
T Consensus 372 ~~g~~~~~~~~~~~~ 386 (410)
T 2j0s_A 372 RKGVAINFVKNDDIR 386 (410)
T ss_dssp CCEEEEEEEEGGGHH
T ss_pred CceEEEEEecHHHHH
Confidence 99999999887654
No 14
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-38 Score=325.10 Aligned_cols=322 Identities=18% Similarity=0.264 Sum_probs=233.7
Q ss_pred CCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcC-CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHH
Q 008735 22 PFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99 (555)
Q Consensus 22 ~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~-~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l 99 (555)
+|..+. ++.+.+.+...++..++++|+++++.+.++ +++++.+|||||||+++..+++......++.+++++.|++.+
T Consensus 7 ~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L 86 (367)
T 1hv8_A 7 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTREL 86 (367)
T ss_dssp CGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHH
T ss_pred chhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHH
Confidence 444443 667788899999999999999999999988 799999999999998777766665544456789999999999
Q ss_pred HHHHHHHHHHHhCCccCCEEEEEEecC-------------CCCCchhhHHHhhcC--CCCCCCceeEeecccccccchhH
Q 008735 100 AVTVAKRVAEESGVELGQRVGYSIRFD-------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDV 164 (555)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~vg~~~~~~-------------~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ 164 (555)
+.|+.+.+....+.. +..++...... ..+.+...+...+.. ..+.+++++|+||+|+.....
T Consensus 87 ~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~-- 163 (367)
T 1hv8_A 87 AIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMG-- 163 (367)
T ss_dssp HHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTT--
T ss_pred HHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhc--
Confidence 999999988876532 22222111111 011122222233322 336889999999999532211
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHH---HHhhhCCC
Q 008735 165 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG---FSEYFGCA 241 (555)
Q Consensus 165 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~---~~~~~~~~ 241 (555)
+...+..+ +..+. .+.++++||||++.+. +..++++.
T Consensus 164 ~~~~~~~~------------------------------------~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~~ 203 (367)
T 1hv8_A 164 FIKDVEKI------------------------------------LNACN----KDKRILLFSATMPREILNLAKKYMGDY 203 (367)
T ss_dssp THHHHHHH------------------------------------HHTSC----SSCEEEEECSSCCHHHHHHHHHHCCSE
T ss_pred hHHHHHHH------------------------------------HHhCC----CCceEEEEeeccCHHHHHHHHHHcCCC
Confidence 11111121 11111 6789999999996643 34666654
Q ss_pred CeEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEe
Q 008735 242 KAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI 321 (555)
Q Consensus 242 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~l 321 (555)
..+.... ...+...+......+.... +..... ..++++||||+++++++.+++.|.+. ++.+..+
T Consensus 204 ~~~~~~~-~~~~~~~~~~~~~~~~~~~----l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~ 268 (367)
T 1hv8_A 204 SFIKAKI-NANIEQSYVEVNENERFEA----LCRLLK-NKEFYGLVFCKTKRDTKELASMLRDI---------GFKAGAI 268 (367)
T ss_dssp EEEECCS-SSSSEEEEEECCGGGHHHH----HHHHHC-STTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEE
T ss_pred eEEEecC-CCCceEEEEEeChHHHHHH----HHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhc---------CCCeEEe
Confidence 4443332 2344444444433333333 233333 45778999999999999999999886 7889999
Q ss_pred cCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccC
Q 008735 322 FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 401 (555)
Q Consensus 322 h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaG 401 (555)
||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|.||+||||
T Consensus 269 ~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~----------~~~s~~~~~Q~~GR~~ 330 (367)
T 1hv8_A 269 HGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN--------YH----------LPQNPESYMHRIGRTG 330 (367)
T ss_dssp CSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE--------SS----------CCSCHHHHHHHSTTTC
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEE--------ec----------CCCCHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999 66 5889999999999999
Q ss_pred CCC-CCEEEEccChhhHhc
Q 008735 402 REG-PGKCFRLYPENEFDK 419 (555)
Q Consensus 402 R~~-~G~~~~l~~~~~~~~ 419 (555)
|.| +|.|+.+++++++..
T Consensus 331 R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 331 RAGKKGKAISIINRREYKK 349 (367)
T ss_dssp CSSSCCEEEEEECTTSHHH
T ss_pred cCCCccEEEEEEcHHHHHH
Confidence 998 999999998876653
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.8e-38 Score=325.67 Aligned_cols=327 Identities=15% Similarity=0.169 Sum_probs=230.4
Q ss_pred CCCCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc-CCCcEEEEeCcc
Q 008735 19 HSKPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPR 96 (555)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~-~~~~~i~~~~P~ 96 (555)
.+.+|..+. ++.+.+.+...++-.++++|.++++.+.+++++++.+|||+|||..+..+++..... .++.+++++.|+
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 85 (391)
T 1xti_A 6 MSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 85 (391)
T ss_dssp ---CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCC
Confidence 344555544 667788888888888999999999999999999999999999997665555544322 235579999999
Q ss_pred HHHHHHHHHHHHHHhCCccCCEEEEEEecC---------------CCCCchhhHHHhhcC--CCCCCCceeEeecccccc
Q 008735 97 RVAAVTVAKRVAEESGVELGQRVGYSIRFD---------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERT 159 (555)
Q Consensus 97 r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~---------------~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~ 159 (555)
+.++.|+.+.+.+......+..++...... ..+.+...+...+.. ..+.++++||+||||...
T Consensus 86 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~ 165 (391)
T 1xti_A 86 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 165 (391)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHT
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHh
Confidence 999999999887775433233343322211 111222223233222 246889999999999654
Q ss_pred cchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCH--HH-HHh
Q 008735 160 VHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RG-FSE 236 (555)
Q Consensus 160 ~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~--~~-~~~ 236 (555)
..... ...+..++... ..+.++++||||++. .. +..
T Consensus 166 ~~~~~-~~~~~~~~~~~----------------------------------------~~~~~~i~~SAT~~~~~~~~~~~ 204 (391)
T 1xti_A 166 EQLDM-RRDVQEIFRMT----------------------------------------PHEKQVMMFSATLSKEIRPVCRK 204 (391)
T ss_dssp SSHHH-HHHHHHHHHTS----------------------------------------CSSSEEEEEESSCCSTHHHHHHH
T ss_pred hccch-HHHHHHHHhhC----------------------------------------CCCceEEEEEeeCCHHHHHHHHH
Confidence 32221 11222222211 157899999999943 23 345
Q ss_pred hhCCCCeEEeCCcc----ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCC
Q 008735 237 YFGCAKAVHVQGRQ----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA 312 (555)
Q Consensus 237 ~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~ 312 (555)
++..+..+.+.... ..+...+........... +..+......+++||||+++++++.+++.|.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~------- 273 (391)
T 1xti_A 205 FMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRK----LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ------- 273 (391)
T ss_dssp HCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHH----HHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT-------
T ss_pred HcCCCeEEEecCccccCcccceEEEEEcCchhHHHH----HHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC-------
Confidence 66554444433221 223333333333332222 233333345789999999999999999999886
Q ss_pred CCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHh
Q 008735 313 SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQ 392 (555)
Q Consensus 313 ~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~ 392 (555)
++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+
T Consensus 274 --~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~--------~~----------~p~s~~~ 333 (391)
T 1xti_A 274 --NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YD----------MPEDSDT 333 (391)
T ss_dssp --TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE--------SS----------CCSSHHH
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE--------eC----------CCCCHHH
Confidence 788999999999999999999999999999999999999999999999999 66 5889999
Q ss_pred HHHHhcccCCCC-CCEEEEccChhhH
Q 008735 393 ALQRSGRAGREG-PGKCFRLYPENEF 417 (555)
Q Consensus 393 ~~Qr~GRaGR~~-~G~~~~l~~~~~~ 417 (555)
|+||+||+||.| +|.|+.++++++.
T Consensus 334 ~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 334 YLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp HHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred HHHhcccccCCCCceEEEEEEcccch
Confidence 999999999998 9999999986543
No 16
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.4e-38 Score=327.16 Aligned_cols=325 Identities=14% Similarity=0.152 Sum_probs=229.8
Q ss_pred CCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccC-CCcEEEEeCccHH
Q 008735 21 KPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRV 98 (555)
Q Consensus 21 ~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~-~~~~i~~~~P~r~ 98 (555)
..|..+. ++.+.+.+...++-.++++|+++++.+.+++++++.+|||||||+.+..+++...... .+.+++++.|++.
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 100 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRE 100 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHH
Confidence 3455444 6678888888888889999999999999999999999999999976666665543322 3557999999999
Q ss_pred HHHHHHHHHHHHhCCccCCEEEEEEecCC--------------CCCchhhHHHhhcC--CCCCCCceeEeecccccccch
Q 008735 99 AAVTVAKRVAEESGVELGQRVGYSIRFDD--------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHT 162 (555)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~~vg~~~~~~~--------------~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~ 162 (555)
++.|+.+.+...... .+..++....... .+.+...+...+.. ..+.++++||+||+|+....
T Consensus 101 L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~- 178 (400)
T 1s2m_A 101 LALQTSQVVRTLGKH-CGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR- 178 (400)
T ss_dssp HHHHHHHHHHHHTTT-TTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH-
T ss_pred HHHHHHHHHHHHhcc-cCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhh-
Confidence 999999988776542 2333332221110 11122233233332 34788999999999953221
Q ss_pred hHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHH---HHhhhC
Q 008735 163 DVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG---FSEYFG 239 (555)
Q Consensus 163 d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~---~~~~~~ 239 (555)
.+...+..+... +. +..++++||||++... +..++.
T Consensus 179 -~~~~~~~~i~~~------------------------------------~~----~~~~~i~lSAT~~~~~~~~~~~~~~ 217 (400)
T 1s2m_A 179 -DFKTIIEQILSF------------------------------------LP----PTHQSLLFSATFPLTVKEFMVKHLH 217 (400)
T ss_dssp -HHHHHHHHHHTT------------------------------------SC----SSCEEEEEESCCCHHHHHHHHHHCS
T ss_pred -chHHHHHHHHHh------------------------------------CC----cCceEEEEEecCCHHHHHHHHHHcC
Confidence 122222222211 11 5679999999996532 334554
Q ss_pred CCCeEEeCCcc--ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeE
Q 008735 240 CAKAVHVQGRQ--FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLV 317 (555)
Q Consensus 240 ~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~ 317 (555)
....+.+.... ..+...+......... ..+..+......+++||||+++++++.+++.|.+. ++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~----~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~ 284 (400)
T 1s2m_A 218 KPYEINLMEELTLKGITQYYAFVEERQKL----HCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL---------GYS 284 (400)
T ss_dssp SCEEESCCSSCBCTTEEEEEEECCGGGHH----HHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH---------TCC
T ss_pred CCeEEEeccccccCCceeEEEEechhhHH----HHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc---------CCC
Confidence 43222222211 1223333322222222 22233333345789999999999999999999987 788
Q ss_pred EEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHh
Q 008735 318 TVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRS 397 (555)
Q Consensus 318 v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~ 397 (555)
+..+||+|+.++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+
T Consensus 285 ~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~--------~~----------~p~s~~~~~Qr~ 346 (400)
T 1s2m_A 285 CYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN--------FD----------FPKTAETYLHRI 346 (400)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE--------SS----------CCSSHHHHHHHH
T ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE--------eC----------CCCCHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999 66 588999999999
Q ss_pred cccCCCC-CCEEEEccChhhHhc
Q 008735 398 GRAGREG-PGKCFRLYPENEFDK 419 (555)
Q Consensus 398 GRaGR~~-~G~~~~l~~~~~~~~ 419 (555)
|||||.| +|.|+.++++++...
T Consensus 347 GR~gR~g~~g~~~~l~~~~~~~~ 369 (400)
T 1s2m_A 347 GRSGRFGHLGLAINLINWNDRFN 369 (400)
T ss_dssp CBSSCTTCCEEEEEEECGGGHHH
T ss_pred chhcCCCCCceEEEEeccchHHH
Confidence 9999998 999999999887643
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.5e-39 Score=342.60 Aligned_cols=332 Identities=13% Similarity=0.162 Sum_probs=120.7
Q ss_pred CCCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcC--CeEEEEcCCCCchhhHHHHHHHhccccC-CCcEEEEeCc
Q 008735 20 SKPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQP 95 (555)
Q Consensus 20 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~--~~~ii~apTGsGKT~~l~~~i~~~~~~~-~~~~i~~~~P 95 (555)
..+|..+. ++.+.+.+...++..++++|.++++.+..+ ++++++||||||||..+.++++...... .+.+++++.|
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 170 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeC
Confidence 34555444 566778888899999999999999999987 9999999999999977666666554332 2447999999
Q ss_pred cHHHHHHHHHHHHHHhCCccCCEEEEEEecCC-----------CCCchhhHHHhhcC-C--CCCCCceeEeecccccccc
Q 008735 96 RRVAAVTVAKRVAEESGVELGQRVGYSIRFDD-----------RTSTSTRIKEALLD-P--YLSRYSAIIVDEAHERTVH 161 (555)
Q Consensus 96 ~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~-----------~~~~~~~i~~~~~~-~--~l~~~~~iIiDE~He~~~~ 161 (555)
+++++.|+.+.+........+..+++...... .+.+..++..++.. . .+.++++||+||+|+....
T Consensus 171 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~ 250 (479)
T 3fmp_B 171 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT 250 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhc
Confidence 99999999888877665433334443333211 11223334344422 2 3478999999999953221
Q ss_pred hhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH--HHH-hhh
Q 008735 162 TDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYF 238 (555)
Q Consensus 162 ~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--~~~-~~~ 238 (555)
.. +......++..+. .+.+++++|||++.+ .+. .++
T Consensus 251 ~~-------------------------------------~~~~~~~i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~ 289 (479)
T 3fmp_B 251 QG-------------------------------------HQDQSIRIQRMLP----RNCQMLLFSATFEDSVWKFAQKVV 289 (479)
T ss_dssp TT-------------------------------------HHHHHHHHHTTSC----TTSEEEEEESCCCHHHHHHHHHHS
T ss_pred CC-------------------------------------cHHHHHHHHhhCC----ccceEEEEeCCCCHHHHHHHHHHc
Confidence 11 1111111111111 678999999999654 333 445
Q ss_pred CCCCeEEeCCccccce---EEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCC
Q 008735 239 GCAKAVHVQGRQFPVE---ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK 315 (555)
Q Consensus 239 ~~~~~~~~~~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~ 315 (555)
.+...+.+........ ..+..... .......+..+......+++||||++++.++.++..|.+. +
T Consensus 290 ~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~---------~ 357 (479)
T 3fmp_B 290 PDPNVIKLKREEETLDTIKQYYVLCSS---RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------G 357 (479)
T ss_dssp SSEEEEEEC-----------------------------------------------------------------------
T ss_pred CCCeEEeccccccCcCCceEEEEEeCC---HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC---------C
Confidence 4444444443222111 11111111 1122233333444445678999999999999999999876 7
Q ss_pred eEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHH
Q 008735 316 LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQ 395 (555)
Q Consensus 316 ~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Q 395 (555)
+.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+ ||...... .+.+..+|+|
T Consensus 358 ~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~--------~d~p~~~~----~~~s~~~~~Q 425 (479)
T 3fmp_B 358 HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN--------FDLPVDKD----GNPDNETYLH 425 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE--------ecCCCCCc----cCCCHHHHHH
Confidence 88999999999999999999999999999999999999999999999999 66221100 1257789999
Q ss_pred HhcccCCCC-CCEEEEccChhh
Q 008735 396 RSGRAGREG-PGKCFRLYPENE 416 (555)
Q Consensus 396 r~GRaGR~~-~G~~~~l~~~~~ 416 (555)
|+|||||.| .|.|+.+++..+
T Consensus 426 r~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 426 RIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ----------------------
T ss_pred HhcccccCCCCceEEEEEcCcc
Confidence 999999998 899999997654
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.3e-37 Score=329.02 Aligned_cols=312 Identities=16% Similarity=0.230 Sum_probs=219.5
Q ss_pred CCCCCC-hhHHHHHHHh-hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHH
Q 008735 22 PFFNDS-SSRRQKILQQ-RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 99 (555)
Q Consensus 22 ~~~~~~-~~~~~~~~~~-~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l 99 (555)
.|..+. ++...+.+++ .++-.++++|+++++.+.+|+++++++|||||||......++.. ...++++.|++++
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----~g~~lvi~P~~aL 77 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----NGLTVVVSPLISL 77 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----SSEEEEECSCHHH
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----CCCEEEECChHHH
Confidence 455555 5566677776 67778899999999999999999999999999995333333322 2468999999999
Q ss_pred HHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhhH---H---------------HhhcC-----CCCCCCceeEeeccc
Q 008735 100 AVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI---K---------------EALLD-----PYLSRYSAIIVDEAH 156 (555)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i---~---------------~~~~~-----~~l~~~~~iIiDE~H 156 (555)
+.++.+.+... + ..+++.. ...+..... . .+... ....++++|||||||
T Consensus 78 ~~q~~~~l~~~-g----i~~~~l~---~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH 149 (523)
T 1oyw_A 78 MKDQVDQLQAN-G----VAAACLN---STQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAH 149 (523)
T ss_dssp HHHHHHHHHHT-T----CCEEEEC---TTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGG
T ss_pred HHHHHHHHHHc-C----CcEEEEe---CCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcc
Confidence 99998887652 2 2222221 111111100 0 11100 113678999999999
Q ss_pred ccccchhH---HHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH-
Q 008735 157 ERTVHTDV---LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR- 232 (555)
Q Consensus 157 e~~~~~d~---ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~- 232 (555)
+...+... ....+..+.... ++.++++||||++..
T Consensus 150 ~i~~~g~~fr~~~~~l~~l~~~~-----------------------------------------~~~~~i~lSAT~~~~~ 188 (523)
T 1oyw_A 150 CISQWGHDFRPEYAALGQLRQRF-----------------------------------------PTLPFMALTATADDTT 188 (523)
T ss_dssp GGCTTSSCCCHHHHGGGGHHHHC-----------------------------------------TTSCEEEEESCCCHHH
T ss_pred ccCcCCCccHHHHHHHHHHHHhC-----------------------------------------CCCCEEEEeCCCCHHH
Confidence 75432211 111111111111 678999999999664
Q ss_pred --HHHhhhCC-CCeEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcC
Q 008735 233 --GFSEYFGC-AKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL 309 (555)
Q Consensus 233 --~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~ 309 (555)
++.++++- .+.+.+.+...+ +..+......+.... +........++++||||+|+++++.+++.|.+.
T Consensus 189 ~~~i~~~l~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~~----l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~---- 259 (523)
T 1oyw_A 189 RQDIVRLLGLNDPLIQISSFDRP-NIRYMLMEKFKPLDQ----LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK---- 259 (523)
T ss_dssp HHHHHHHHTCCSCEEEECCCCCT-TEEEEEEECSSHHHH----HHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT----
T ss_pred HHHHHHHhCCCCCeEEeCCCCCC-ceEEEEEeCCCHHHH----HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC----
Confidence 45566653 334444332222 233332223333333 333333345678999999999999999999886
Q ss_pred CCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecC
Q 008735 310 PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 389 (555)
Q Consensus 310 ~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s 389 (555)
++.+..+||+|+.++|.++++.|++|+.+|||||+++++|||+|+|++||+ || .|.|
T Consensus 260 -----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~--------~~----------~p~s 316 (523)
T 1oyw_A 260 -----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FD----------IPRN 316 (523)
T ss_dssp -----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE--------SS----------CCSS
T ss_pred -----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE--------EC----------CCCC
Confidence 788999999999999999999999999999999999999999999999999 66 5899
Q ss_pred HHhHHHHhcccCCCC-CCEEEEccChhhHhc
Q 008735 390 KAQALQRSGRAGREG-PGKCFRLYPENEFDK 419 (555)
Q Consensus 390 ~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~~ 419 (555)
.++|+||+|||||.| +|.|+.+|+.++...
T Consensus 317 ~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~ 347 (523)
T 1oyw_A 317 IESYYQETGRAGRDGLPAEAMLFYDPADMAW 347 (523)
T ss_dssp HHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred HHHHHHHhccccCCCCCceEEEEeCHHHHHH
Confidence 999999999999999 999999999887653
No 19
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.3e-37 Score=335.33 Aligned_cols=329 Identities=13% Similarity=0.175 Sum_probs=224.1
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHh--cCCeEEEEcCCCCchhhHHHHHHHhcccc-----CCCcEEEEeCccHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVR--KNDILIIVGETGSGKTTQLPQFLFHAGFC-----RDGKLIGVTQPRRVAA 100 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~--~~~~~ii~apTGsGKT~~l~~~i~~~~~~-----~~~~~i~~~~P~r~l~ 100 (555)
++.+.+.+...++..++++|.++++.+. .+++++++||||||||..+..+++..... ..+.+++++.|+++++
T Consensus 80 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La 159 (563)
T 3i5x_A 80 DKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLA 159 (563)
T ss_dssp CHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHH
Confidence 4556677778888899999999999999 67899999999999995544444332211 1234799999999999
Q ss_pred HHHHHHHHHHhCCcc---CCEEEEEEecC---------------CCCCchhhHHHhhc---CCCCCCCceeEeecccccc
Q 008735 101 VTVAKRVAEESGVEL---GQRVGYSIRFD---------------DRTSTSTRIKEALL---DPYLSRYSAIIVDEAHERT 159 (555)
Q Consensus 101 ~~~~~~~~~~~~~~~---~~~vg~~~~~~---------------~~~~~~~~i~~~~~---~~~l~~~~~iIiDE~He~~ 159 (555)
.|+.+.+........ ...+....... ..+.+..++..++. ...++.+++||+||||+
T Consensus 160 ~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-- 237 (563)
T 3i5x_A 160 LQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR-- 237 (563)
T ss_dssp HHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH--
T ss_pred HHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH--
Confidence 999998877543111 11111111111 11122223322222 22478899999999994
Q ss_pred cchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccc---cCCCCceEEEeccCCCH--HHH
Q 008735 160 VHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQG---RKFAPLKLIIMSASLDA--RGF 234 (555)
Q Consensus 160 ~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~---~~~~~~~ii~~SAT~~~--~~~ 234 (555)
+++.++...+..++..+.. ...++.|+++||||++. ..+
T Consensus 238 ------------------------------------l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~ 281 (563)
T 3i5x_A 238 ------------------------------------LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKL 281 (563)
T ss_dssp ------------------------------------HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHH
T ss_pred ------------------------------------HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHH
Confidence 3333333333333333211 11257899999999954 445
Q ss_pred HhhhCC-CCeEEeCCc-------cccceEEEcC-CCCCChHHHHHHHHHHHHh-cCCCCcEEEEcCCHHHHHHHHHHHHH
Q 008735 235 SEYFGC-AKAVHVQGR-------QFPVEILYTL-YPEPDYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQE 304 (555)
Q Consensus 235 ~~~~~~-~~~~~~~~~-------~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~iLVF~~t~~~~~~l~~~L~~ 304 (555)
..++.. ...+.+... ...+...+.. ..........+..+..... ...++++||||+|++.++.+++.|.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~ 361 (563)
T 3i5x_A 282 ANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKN 361 (563)
T ss_dssp TTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 544433 333322111 1111222211 1122233333443433333 24577899999999999999999998
Q ss_pred HhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccc
Q 008735 305 RLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLL 384 (555)
Q Consensus 305 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~ 384 (555)
.+.. ++.+..+||+|++++|..+++.|++|+.+|||||+++++|||+|+|++||+ ||
T Consensus 362 ~~~~------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~~--------- 418 (563)
T 3i5x_A 362 EFKK------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IG--------- 418 (563)
T ss_dssp HHTT------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ES---------
T ss_pred hccC------CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE--------EC---------
Confidence 7543 678999999999999999999999999999999999999999999999999 77
Q ss_pred eeecCHHhHHHHhcccCCCC-CCEEEEccChhhHh
Q 008735 385 VVPISKAQALQRSGRAGREG-PGKCFRLYPENEFD 418 (555)
Q Consensus 385 ~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 418 (555)
.|.+..+|+||+|||||.| .|.|+.++++.+..
T Consensus 419 -~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 419 -VPSELANYIHRIGRTARSGKEGSSVLFICKDELP 452 (563)
T ss_dssp -CCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred -CCCchhhhhhhcCccccCCCCceEEEEEchhHHH
Confidence 6889999999999999999 99999999876543
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-39 Score=366.12 Aligned_cols=322 Identities=16% Similarity=0.199 Sum_probs=227.0
Q ss_pred HHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCc
Q 008735 35 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE 114 (555)
Q Consensus 35 ~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~ 114 (555)
+.....++++++|.++++.+.+|++++++||||||||+++.++++... ..+.+++++.|+++|+.|++..+...++ .
T Consensus 177 ~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l--~~g~rvlvl~PtraLa~Q~~~~l~~~~~-~ 253 (1108)
T 3l9o_A 177 EARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL--KNKQRVIYTSPIKALSNQKYRELLAEFG-D 253 (1108)
T ss_dssp CSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHHHHHHHTS-S
T ss_pred HHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEcCcHHHHHHHHHHHHHHhC-C
Confidence 356778899999999999999999999999999999987777766553 2366899999999999999999988876 2
Q ss_pred cCCEEEEEEecCC-------CCCchhhHHHhhc-CC-CCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCC
Q 008735 115 LGQRVGYSIRFDD-------RTSTSTRIKEALL-DP-YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSN 185 (555)
Q Consensus 115 ~~~~vg~~~~~~~-------~~~~~~~i~~~~~-~~-~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~ 185 (555)
+|+...... .+.+..++..++. .. .+.++++|||||||.
T Consensus 254 ----VglltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~---------------------------- 301 (1108)
T 3l9o_A 254 ----VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY---------------------------- 301 (1108)
T ss_dssp ----EEEECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGG----------------------------
T ss_pred ----ccEEeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhh----------------------------
Confidence 443322111 1122333333332 22 367899999999993
Q ss_pred CCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhCC-----CCeEEeCCccccceEEEcC
Q 008735 186 GNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGC-----AKAVHVQGRQFPVEILYTL 259 (555)
Q Consensus 186 ~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~ 259 (555)
+.+.+++..+..++..+. .++++|+||||+ +..++++|++. ..++....++.++..++..
T Consensus 302 ----------l~d~~rg~~~e~ii~~l~----~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~ 367 (1108)
T 3l9o_A 302 ----------MRDKERGVVWEETIILLP----DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFP 367 (1108)
T ss_dssp ----------TTSHHHHHHHHHHHHHSC----TTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEE
T ss_pred ----------ccccchHHHHHHHHHhcC----CCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEee
Confidence 333333344444444443 678999999999 77788888642 3345555666666544422
Q ss_pred CCCC----------Ch-----------------------------------------HHHHHHHHHHHHhcCCCCcEEEE
Q 008735 260 YPEP----------DY-----------------------------------------LDATLITIFQVHLDEAPGDILVF 288 (555)
Q Consensus 260 ~~~~----------~~-----------------------------------------~~~~~~~~~~~~~~~~~~~iLVF 288 (555)
.... .+ ....+..++........+++|||
T Consensus 368 ~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF 447 (1108)
T 3l9o_A 368 AHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVF 447 (1108)
T ss_dssp TTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEE
Confidence 1100 00 02233344445555557799999
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCCC------------------C------------CCeEEEEecCCCCHHHHHhhcCcCC
Q 008735 289 LTGQEEIESVERLVQERLLQLPEA------------------S------------RKLVTVPIFSSLPSEQQMRVFAPAA 338 (555)
Q Consensus 289 ~~t~~~~~~l~~~L~~~~~~~~~~------------------~------------~~~~v~~lh~~l~~~~r~~i~~~f~ 338 (555)
|+++++|+.++..|.......... . ....+..+||+|++.+|..+++.|+
T Consensus 448 ~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~ 527 (1108)
T 3l9o_A 448 SFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQ 527 (1108)
T ss_dssp ESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHh
Confidence 999999999998886431110000 0 0112889999999999999999999
Q ss_pred CCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEccChh
Q 008735 339 AGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 415 (555)
Q Consensus 339 ~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 415 (555)
+|.++|||||+++++|||+|++++||+.. ..||.. ...|+|..+|+||+|||||.| .|.||.++++.
T Consensus 528 ~G~ikVLVAT~vla~GIDiP~v~~VI~~~----~~~d~~------~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 528 EGFLKVLFATETFSIGLNMPAKTVVFTSV----RKWDGQ------QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp HTCCCEEEEESCCCSCCCC--CEEEESCS----EEESSS------CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CCCCeEEEECcHHhcCCCCCCceEEEecC----cccCcc------ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999999999999999999999822 224422 125889999999999999999 89999999654
No 21
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3e-38 Score=326.78 Aligned_cols=320 Identities=15% Similarity=0.244 Sum_probs=113.5
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc-CCCcEEEEeCccHHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~-~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
.+.+.+.+...++..++++|+++++.+.+++++++.+|||||||.++..+++..... ..+.+++++.|++.++.|+.+.
T Consensus 29 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~ 108 (394)
T 1fuu_A 29 DENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKV 108 (394)
T ss_dssp CHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHH
Confidence 667778888889999999999999999999999999999999997655555544332 2356899999999999999998
Q ss_pred HHHHhCCccCCEEEEEEecC-------------CCCCchhhHHHhhc--CCCCCCCceeEeecccccccchhHHHHHHHH
Q 008735 107 VAEESGVELGQRVGYSIRFD-------------DRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKK 171 (555)
Q Consensus 107 ~~~~~~~~~~~~vg~~~~~~-------------~~~~~~~~i~~~~~--~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~ 171 (555)
+.+.... .+..++...... ..+.+...+...+. ...+.+++++|+||+|+..
T Consensus 109 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~------------ 175 (394)
T 1fuu_A 109 VMALAFH-MDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML------------ 175 (394)
T ss_dssp HHHHTTT-SCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH------------
T ss_pred HHHHhcc-CCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhh------------
Confidence 8776542 222333221111 11112222222222 2236789999999999521
Q ss_pred HHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH---HHHhhhCCCCeEEeCC
Q 008735 172 VQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQG 248 (555)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~---~~~~~~~~~~~~~~~~ 248 (555)
+.++...+..++..+. ++.++++||||++.. ....++.++..+.+..
T Consensus 176 --------------------------~~~~~~~~~~~~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 225 (394)
T 1fuu_A 176 --------------------------SSGFKEQIYQIFTLLP----PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 225 (394)
T ss_dssp --------------------------HTTCHHHHHHHHHHSC----TTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC
T ss_pred --------------------------CCCcHHHHHHHHHhCC----CCceEEEEEEecCHHHHHHHHHhcCCCeEEEecC
Confidence 1111111112222222 678999999999653 2345665544444333
Q ss_pred cccc---ceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCC
Q 008735 249 RQFP---VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 325 (555)
Q Consensus 249 ~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 325 (555)
.... +...+......++ ....+..+......+++||||+++++++.+++.|.+. ++.+..+||++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~ 293 (394)
T 1fuu_A 226 DELTLEGIKQFYVNVEEEEY---KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDL 293 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCceEEEEEcCchhh---HHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc---------CCeEEEeeCCC
Confidence 2211 1112221111111 1222223333334678999999999999999999875 78899999999
Q ss_pred CHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-
Q 008735 326 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG- 404 (555)
Q Consensus 326 ~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~- 404 (555)
+.++|.++++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.|
T Consensus 294 ~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~--------~~----------~p~s~~~~~Qr~GR~~R~g~ 355 (394)
T 1fuu_A 294 PQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN--------YD----------LPANKENYIHRIGRGGRFGR 355 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHcCcccCCCC
Confidence 9999999999999999999999999999999999999998 66 5788999999999999998
Q ss_pred CCEEEEccChhhHhcc
Q 008735 405 PGKCFRLYPENEFDKL 420 (555)
Q Consensus 405 ~G~~~~l~~~~~~~~~ 420 (555)
+|.|+.++++++...+
T Consensus 356 ~g~~~~~~~~~~~~~~ 371 (394)
T 1fuu_A 356 KGVAINFVTNEDVGAM 371 (394)
T ss_dssp ----------------
T ss_pred CceEEEEEchhHHHHH
Confidence 9999999988876543
No 22
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.7e-37 Score=332.76 Aligned_cols=330 Identities=13% Similarity=0.182 Sum_probs=225.1
Q ss_pred ChhHHHHHHHhhcCCCcHHHHHHHHHHHh--cCCeEEEEcCCCCchhhHHHHHHHhcccc-----CCCcEEEEeCccHHH
Q 008735 27 SSSRRQKILQQRKSLPIASVEKRLVEEVR--KNDILIIVGETGSGKTTQLPQFLFHAGFC-----RDGKLIGVTQPRRVA 99 (555)
Q Consensus 27 ~~~~~~~~~~~~~~l~~~~~Q~~~i~~i~--~~~~~ii~apTGsGKT~~l~~~i~~~~~~-----~~~~~i~~~~P~r~l 99 (555)
.++.+.+.+...++-.++++|+++++.+. .++++++++|||||||..+..+++..... ..+.+++++.|++++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 46677788888888889999999999999 78999999999999995544444332211 124579999999999
Q ss_pred HHHHHHHHHHHhCCcc---CCEEEEEEec---------------CCCCCchhhHHHhhc---CCCCCCCceeEeeccccc
Q 008735 100 AVTVAKRVAEESGVEL---GQRVGYSIRF---------------DDRTSTSTRIKEALL---DPYLSRYSAIIVDEAHER 158 (555)
Q Consensus 100 ~~~~~~~~~~~~~~~~---~~~vg~~~~~---------------~~~~~~~~~i~~~~~---~~~l~~~~~iIiDE~He~ 158 (555)
+.|+.+.+........ ...+...... +..+.+..++...+. ...++.+++||+||||+
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~- 186 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR- 186 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH-
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH-
Confidence 9999998877642111 1111111110 111122222322222 23478899999999995
Q ss_pred ccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccc---cCCCCceEEEeccCCCH--HH
Q 008735 159 TVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQG---RKFAPLKLIIMSASLDA--RG 233 (555)
Q Consensus 159 ~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~---~~~~~~~ii~~SAT~~~--~~ 233 (555)
+++.++...+..++..+.. ....+.++++||||++. ..
T Consensus 187 -------------------------------------l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~ 229 (579)
T 3sqw_A 187 -------------------------------------LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQK 229 (579)
T ss_dssp -------------------------------------HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH
T ss_pred -------------------------------------hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHH
Confidence 3333333333333332211 11247899999999954 34
Q ss_pred HHhh-hCCCCeEEeCCc-------cccceEEEcCC-CCCChHHHHHHHHHHHHhc-CCCCcEEEEcCCHHHHHHHHHHHH
Q 008735 234 FSEY-FGCAKAVHVQGR-------QFPVEILYTLY-PEPDYLDATLITIFQVHLD-EAPGDILVFLTGQEEIESVERLVQ 303 (555)
Q Consensus 234 ~~~~-~~~~~~~~~~~~-------~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~iLVF~~t~~~~~~l~~~L~ 303 (555)
+..+ +.....+.+... ...+...+... .........+..+...... ..++++||||+|++.++.+++.|.
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~ 309 (579)
T 3sqw_A 230 LANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILK 309 (579)
T ss_dssp HTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHH
Confidence 4443 333333332211 11112222111 1122233334444433332 456789999999999999999999
Q ss_pred HHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCcccc
Q 008735 304 ERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESL 383 (555)
Q Consensus 304 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l 383 (555)
+.+.. ++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||+ ||
T Consensus 310 ~~~~~------~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~--------~~-------- 367 (579)
T 3sqw_A 310 NEFKK------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IG-------- 367 (579)
T ss_dssp HHHTT------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ES--------
T ss_pred HhhcC------CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE--------cC--------
Confidence 87542 678999999999999999999999999999999999999999999999999 77
Q ss_pred ceeecCHHhHHHHhcccCCCC-CCEEEEccChhhHh
Q 008735 384 LVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFD 418 (555)
Q Consensus 384 ~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 418 (555)
.|.+..+|+||+|||||.| .|.|+.++++.+..
T Consensus 368 --~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 368 --VPSELANYIHRIGRTARSGKEGSSVLFICKDELP 401 (579)
T ss_dssp --CCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred --CCCCHHHhhhhccccccCCCCceEEEEEcccHHH
Confidence 6889999999999999999 99999999876643
No 23
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=5.4e-38 Score=336.32 Aligned_cols=301 Identities=19% Similarity=0.188 Sum_probs=218.2
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhC
Q 008735 33 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 112 (555)
Q Consensus 33 ~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~ 112 (555)
+.+.++..+|++.+|+++++.+.++++++++||||||||+++++++++. +.+++++.|+|+++.|+++++.+.++
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----g~~vLVl~PTReLA~Qia~~l~~~~g 282 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----GYKVLVLNPSVAATLGFGAYMSKAHG 282 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----CCeEEEEcchHHHHHHHHHHHHHHhC
Confidence 3577788899999999999999999999999999999999999888874 45799999999999999999998888
Q ss_pred CccCCEEEEEEecC---CCCCchhhHHHhhcCC--CCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCC
Q 008735 113 VELGQRVGYSIRFD---DRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 187 (555)
Q Consensus 113 ~~~~~~vg~~~~~~---~~~~~~~~i~~~~~~~--~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~ 187 (555)
..++..+|+..... ....+..+ ++.++ .++++++|||||+|+++...+..+..+.+.+...
T Consensus 283 ~~vg~~vG~~~~~~~~~IlV~TPGr---Ll~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~----------- 348 (666)
T 3o8b_A 283 IDPNIRTGVRTITTGAPVTYSTYGK---FLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETA----------- 348 (666)
T ss_dssp CCCEEECSSCEECCCCSEEEEEHHH---HHHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTT-----------
T ss_pred CCeeEEECcEeccCCCCEEEECcHH---HHhCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhc-----------
Confidence 77666666433211 11122222 23444 3567999999999998887776666555544322
Q ss_pred CCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCCccccceEEEcCCCCCChHH
Q 008735 188 NNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLD 267 (555)
Q Consensus 188 ~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 267 (555)
....+++||||++... . ........+...... ...+..... .
T Consensus 349 ------------------------------~~~llil~SAT~~~~i-~--~~~p~i~~v~~~~~~-~i~~~~~~~--~-- 390 (666)
T 3o8b_A 349 ------------------------------GARLVVLATATPPGSV-T--VPHPNIEEVALSNTG-EIPFYGKAI--P-- 390 (666)
T ss_dssp ------------------------------TCSEEEEEESSCTTCC-C--CCCTTEEEEECBSCS-SEEETTEEE--C--
T ss_pred ------------------------------CCceEEEECCCCCccc-c--cCCcceEEEeecccc-hhHHHHhhh--h--
Confidence 2334788899996421 0 001111111100000 011100000 0
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEe
Q 008735 268 ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILA 347 (555)
Q Consensus 268 ~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlva 347 (555)
.....++++||||+++++++.+++.|++. ++.+..+||+|++++ |+++..+||||
T Consensus 391 ---------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~---------g~~v~~lHG~l~q~e-------r~~~~~~VLVA 445 (666)
T 3o8b_A 391 ---------IEAIRGGRHLIFCHSKKKCDELAAKLSGL---------GINAVAYYRGLDVSV-------IPTIGDVVVVA 445 (666)
T ss_dssp ---------GGGSSSSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECTTSCGGG-------SCSSSCEEEEE
T ss_pred ---------hhhccCCcEEEEeCCHHHHHHHHHHHHhC---------CCcEEEecCCCCHHH-------HHhCCCcEEEE
Confidence 11224789999999999999999999875 788999999999875 34566799999
Q ss_pred cCccccccccCCeEEEEeCCccccee----ecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHh
Q 008735 348 TNIAETSVTIPGIKYVIDPGFVKARL----YDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 418 (555)
Q Consensus 348 T~~~e~Gvdip~v~~VId~g~~~~~~----yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 418 (555)
||++++|||+| +++|||+|+.+..+ |||..++.. ...|.+.++|+||+|||||.++|. |.||++.+..
T Consensus 446 TdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 446 TDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET-TTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp CTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE-EEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred CChHHccCCCC-CcEEEecCccccccccccccccccccc-ccCcCCHHHHHHHhccCCCCCCCE-EEEEecchhh
Confidence 99999999997 99999999888665 556666654 357999999999999999944999 9999876543
No 24
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=3.1e-38 Score=358.04 Aligned_cols=320 Identities=17% Similarity=0.191 Sum_probs=225.3
Q ss_pred hhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccC
Q 008735 37 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 116 (555)
Q Consensus 37 ~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~ 116 (555)
....++++++|+++++.+.+|++++++||||||||+++...+.... ..+.+++++.|+++++.|+++.+.+.++ +
T Consensus 34 ~~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~--~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~ 108 (997)
T 4a4z_A 34 RSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH--RNMTKTIYTSPIKALSNQKFRDFKETFD---D 108 (997)
T ss_dssp CCCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH--HTTCEEEEEESCGGGHHHHHHHHHTTC-----
T ss_pred HhCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHcC---C
Confidence 3455678999999999999999999999999999954333333221 2356899999999999999999887652 2
Q ss_pred CEEEEEEecCC-------CCCchhhHHHhhc--CCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCC
Q 008735 117 QRVGYSIRFDD-------RTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 187 (555)
Q Consensus 117 ~~vg~~~~~~~-------~~~~~~~i~~~~~--~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~ 187 (555)
..++....... .+.+...+...+. ...+.++++|||||+|
T Consensus 109 ~~v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH------------------------------- 157 (997)
T 4a4z_A 109 VNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH------------------------------- 157 (997)
T ss_dssp CCEEEECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-------------------------------
T ss_pred CeEEEEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-------------------------------
Confidence 23332222111 1122333333322 2347889999999998
Q ss_pred CCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhCC-----CCeEEeCCccccceEEEcCC-
Q 008735 188 NNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGC-----AKAVHVQGRQFPVEILYTLY- 260 (555)
Q Consensus 188 ~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~- 260 (555)
.+.+.+++..++.++..+. +++++|+||||+ +..++++|++. ..++....++.|+..++...
T Consensus 158 -------~l~d~~~g~~~e~ii~~l~----~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~ 226 (997)
T 4a4z_A 158 -------YVNDQDRGVVWEEVIIMLP----QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKK 226 (997)
T ss_dssp -------CCCTTCTTCCHHHHHHHSC----TTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETT
T ss_pred -------cccccchHHHHHHHHHhcc----cCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCC
Confidence 4667777777777777765 678999999999 88899999863 23555566666665443210
Q ss_pred -------CCCCh--------------------------------------------------------------------
Q 008735 261 -------PEPDY-------------------------------------------------------------------- 265 (555)
Q Consensus 261 -------~~~~~-------------------------------------------------------------------- 265 (555)
....+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~ 306 (997)
T 4a4z_A 227 ELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAI 306 (997)
T ss_dssp EEEEEECTTCCBCHHHHHHHHHHHC-------------------------------------------------------
T ss_pred cchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000
Q ss_pred -------------HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHh------------------hcCCC---
Q 008735 266 -------------LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERL------------------LQLPE--- 311 (555)
Q Consensus 266 -------------~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~------------------~~~~~--- 311 (555)
....+..++........+++||||+++++|+.++..|.+.. ..+..
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~ 386 (997)
T 4a4z_A 307 GSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDR 386 (997)
T ss_dssp ----------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhh
Confidence 00113344445555557899999999999999998885410 00000
Q ss_pred ---------CCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccc
Q 008735 312 ---------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMES 382 (555)
Q Consensus 312 ---------~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~ 382 (555)
......+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++.+|+. +. ..||..
T Consensus 387 ~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~-~~---~k~dg~----- 457 (997)
T 4a4z_A 387 DLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFS-SI---RKHDGN----- 457 (997)
T ss_dssp TCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEES-CS---EEEETT-----
T ss_pred cchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEe-cc---ccccCc-----
Confidence 000124789999999999999999999999999999999999999999766663 32 335532
Q ss_pred cceeecCHHhHHHHhcccCCCC---CCEEEEccC
Q 008735 383 LLVVPISKAQALQRSGRAGREG---PGKCFRLYP 413 (555)
Q Consensus 383 l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~ 413 (555)
...|.|..+|+||+|||||.| .|.||.++.
T Consensus 458 -~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 458 -GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp -EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred -cCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 226899999999999999988 899999984
No 25
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.3e-36 Score=305.75 Aligned_cols=301 Identities=18% Similarity=0.220 Sum_probs=214.4
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRV 107 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~ 107 (555)
++.+.+.++..++..++++|+++++.+.+++++++.+|||||||.++..+++.. +.+++++.|++.++.|+.+.+
T Consensus 2 ~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----~~~~liv~P~~~L~~q~~~~~ 76 (337)
T 2z0m_A 2 NEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----GMKSLVVTPTRELTRQVASHI 76 (337)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEECSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----cCCEEEEeCCHHHHHHHHHHH
Confidence 346677888899999999999999999999999999999999997766666654 457899999999999999988
Q ss_pred HHHhCCccCCEEEEEEecC-------------CCCCchhhHHHhhcC--CCCCCCceeEeecccccccchhHHHHHHHHH
Q 008735 108 AEESGVELGQRVGYSIRFD-------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 172 (555)
Q Consensus 108 ~~~~~~~~~~~vg~~~~~~-------------~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~ 172 (555)
.+... ..+..++...... ..+.+...+...+.. ..+.++++||+||+|.....
T Consensus 77 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~----------- 144 (337)
T 2z0m_A 77 RDIGR-YMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEM----------- 144 (337)
T ss_dssp HHHTT-TSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHT-----------
T ss_pred HHHhh-hcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcc-----------
Confidence 76543 2222333221111 011222222233222 23678899999999953211
Q ss_pred HHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH---HHHhhhCCCCeEEeCCc
Q 008735 173 QNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGR 249 (555)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~---~~~~~~~~~~~~~~~~~ 249 (555)
++...+..++.... ...++++||||++.. .+..++.+...+.....
T Consensus 145 ---------------------------~~~~~~~~~~~~~~----~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 193 (337)
T 2z0m_A 145 ---------------------------GFIDDIKIILAQTS----NRKITGLFSATIPEEIRKVVKDFITNYEEIEACIG 193 (337)
T ss_dssp ---------------------------TCHHHHHHHHHHCT----TCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGG
T ss_pred ---------------------------ccHHHHHHHHhhCC----cccEEEEEeCcCCHHHHHHHHHhcCCceeeecccc
Confidence 11111111122111 567889999999654 35566665544443333
Q ss_pred cccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHH
Q 008735 250 QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 329 (555)
Q Consensus 250 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 329 (555)
...+...+....... . .. ........++++||||+++++++.+++.|. .+..+||+++.++
T Consensus 194 ~~~~~~~~~~~~~~~-~-~~----~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-------------~~~~~~~~~~~~~ 254 (337)
T 2z0m_A 194 LANVEHKFVHVKDDW-R-SK----VQALRENKDKGVIVFVRTRNRVAKLVRLFD-------------NAIELRGDLPQSV 254 (337)
T ss_dssp GGGEEEEEEECSSSS-H-HH----HHHHHTCCCSSEEEECSCHHHHHHHHTTCT-------------TEEEECTTSCHHH
T ss_pred cCCceEEEEEeChHH-H-HH----HHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-------------hhhhhcCCCCHHH
Confidence 333333333322221 1 11 123334567889999999999999887664 3678899999999
Q ss_pred HHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEE
Q 008735 330 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 408 (555)
Q Consensus 330 r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~ 408 (555)
|.++++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.| +|.|
T Consensus 255 r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~----------~~~s~~~~~Q~~GR~gR~g~~g~~ 316 (337)
T 2z0m_A 255 RNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN--------FD----------APQDLRTYIHRIGRTGRMGRKGEA 316 (337)
T ss_dssp HHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE--------SS----------CCSSHHHHHHHHTTBCGGGCCEEE
T ss_pred HHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE--------ec----------CCCCHHHhhHhcCccccCCCCceE
Confidence 999999999999999999999999999999999999 66 5789999999999999998 8999
Q ss_pred EEccC
Q 008735 409 FRLYP 413 (555)
Q Consensus 409 ~~l~~ 413 (555)
+.++.
T Consensus 317 ~~~~~ 321 (337)
T 2z0m_A 317 ITFIL 321 (337)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 99987
No 26
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-37 Score=350.36 Aligned_cols=325 Identities=18% Similarity=0.235 Sum_probs=227.7
Q ss_pred HhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCcc
Q 008735 36 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 115 (555)
Q Consensus 36 ~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~ 115 (555)
.....+.++++|.++++.+.+|++++|+||||||||+++..+++... ..+.+++++.|+++++.|....+...++ .+
T Consensus 80 ~~~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l--~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~v 156 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL--KNKQRVIYTSPIKALSNQKYRELLAEFG-DV 156 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHHHHHHHHS-CE
T ss_pred HHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHh--ccCCeEEEECChHHHHHHHHHHHHHHhC-CE
Confidence 44455679999999999999999999999999999976655554432 2356899999999999999999988876 33
Q ss_pred CCEEEEEEe---cCCCCCchhhHHHhhc--CCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCC
Q 008735 116 GQRVGYSIR---FDDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNN 190 (555)
Q Consensus 116 ~~~vg~~~~---~~~~~~~~~~i~~~~~--~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~ 190 (555)
+...|.... .+..+.+...+..++. ...+.++++|||||+|
T Consensus 157 glltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH---------------------------------- 202 (1010)
T 2xgj_A 157 GLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH---------------------------------- 202 (1010)
T ss_dssp EEECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGG----------------------------------
T ss_pred EEEeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechh----------------------------------
Confidence 222221000 0111223333333322 3457899999999999
Q ss_pred CcchhhhccCCCCcccchhhhccccCCCCceEEEeccCC-CHHHHHhhhC-----CCCeEEeCCccccceEEEcCCC---
Q 008735 191 ENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFG-----CAKAVHVQGRQFPVEILYTLYP--- 261 (555)
Q Consensus 191 ~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~--- 261 (555)
.+.+.+++..++.++..+. .+.++|+||||+ +..++++|++ ...++....++.++..++....
T Consensus 203 ----~l~d~~rg~~~e~il~~l~----~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~ 274 (1010)
T 2xgj_A 203 ----YMRDKERGVVWEETIILLP----DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDG 274 (1010)
T ss_dssp ----GGGCTTTHHHHHHHHHHSC----TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSC
T ss_pred ----hhcccchhHHHHHHHHhcC----CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcc
Confidence 3455555555555555554 678999999999 7888999875 2334555566666554443211
Q ss_pred -------CCCh----H-------------------------------------HHHHHHHHHHHhcCCCCcEEEEcCCHH
Q 008735 262 -------EPDY----L-------------------------------------DATLITIFQVHLDEAPGDILVFLTGQE 293 (555)
Q Consensus 262 -------~~~~----~-------------------------------------~~~~~~~~~~~~~~~~~~iLVF~~t~~ 293 (555)
...+ . ...+..++........+++||||++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~ 354 (1010)
T 2xgj_A 275 IYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKR 354 (1010)
T ss_dssp CEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHH
T ss_pred eeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHH
Confidence 0000 0 111222333333334568999999999
Q ss_pred HHHHHHHHHHHHhh------------------cCCCCCC------------CeEEEEecCCCCHHHHHhhcCcCCCCCcE
Q 008735 294 EIESVERLVQERLL------------------QLPEASR------------KLVTVPIFSSLPSEQQMRVFAPAAAGFRK 343 (555)
Q Consensus 294 ~~~~l~~~L~~~~~------------------~~~~~~~------------~~~v~~lh~~l~~~~r~~i~~~f~~g~~~ 343 (555)
.|+.+++.|.+..- .+..... ...+..+||+|++.+|..+++.|++|.++
T Consensus 355 ~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik 434 (1010)
T 2xgj_A 355 DCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK 434 (1010)
T ss_dssp HHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc
Confidence 99999988864200 0000000 12388999999999999999999999999
Q ss_pred EEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEccChh
Q 008735 344 VILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 415 (555)
Q Consensus 344 vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 415 (555)
|||||+++++|||+|++++||+ ....||... ..|.+..+|.||+|||||.| .|.|+.++++.
T Consensus 435 VLVAT~~la~GIDiP~~~vVI~----~~~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 435 VLFATETFSIGLNMPAKTVVFT----SVRKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EEEEEGGGGGSTTCCBSEEEES----CSEEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred EEEEehHhhccCCCCCceEEEe----CCcccCCcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9999999999999999999998 345577322 24899999999999999999 49999999754
No 27
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.4e-37 Score=324.75 Aligned_cols=290 Identities=16% Similarity=0.184 Sum_probs=203.7
Q ss_pred CcHHHHHHHHHHHhcCCeE-EEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEE
Q 008735 42 PIASVEKRLVEEVRKNDIL-IIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 120 (555)
Q Consensus 42 ~~~~~Q~~~i~~i~~~~~~-ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg 120 (555)
.++++|+ +++.+.+++++ +++||||||||+.+...++..... .+.+++++.|+++++.|+.+.+. +..++
T Consensus 4 q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~ 74 (451)
T 2jlq_A 4 MGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-RRLRTLILAPTRVVAAEMEEALR-------GLPIR 74 (451)
T ss_dssp CCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSCEE
T ss_pred CCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-cCCcEEEECCCHHHHHHHHHHhc-------Cceee
Confidence 3445564 67777766655 999999999997433333322221 34679999999999999988763 33344
Q ss_pred EEEecCCC-CC--------chh-hHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCC
Q 008735 121 YSIRFDDR-TS--------TST-RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNN 190 (555)
Q Consensus 121 ~~~~~~~~-~~--------~~~-~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~ 190 (555)
|....... .. +.. ....+...+.+.++++||+||+|+.+...+..+.++.... ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~-~~-------------- 139 (451)
T 2jlq_A 75 YQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-EM-------------- 139 (451)
T ss_dssp ECCTTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHH-HT--------------
T ss_pred eeeccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhh-cC--------------
Confidence 43332210 01 111 1224455677899999999999988666666555553321 11
Q ss_pred CcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEeCCccccceEEEcCCCCCChHHHHH
Q 008735 191 ENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATL 270 (555)
Q Consensus 191 ~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 270 (555)
++.++++||||++.+....++++.+++.+. +..+... +. .. .
T Consensus 140 ---------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~~~p~~~-~~-----~~----~ 181 (451)
T 2jlq_A 140 ---------------------------GEAAAIFMTATPPGSTDPFPQSNSPIEDIE-REIPERS-WN-----TG----F 181 (451)
T ss_dssp ---------------------------TSCEEEEECSSCTTCCCSSCCCSSCEEEEE-CCCCSSC-CS-----SS----C
T ss_pred ---------------------------CCceEEEEccCCCccchhhhcCCCceEecC-ccCCchh-hH-----HH----H
Confidence 578999999999765544444455544432 2222110 10 00 0
Q ss_pred HHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCc
Q 008735 271 ITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI 350 (555)
Q Consensus 271 ~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~ 350 (555)
.. .. ...+++||||+++++++.+++.|.+. ++.+..+||++ +.++++.|++|+.+|||||++
T Consensus 182 ~~----l~-~~~~~~lVF~~s~~~a~~l~~~L~~~---------g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v 243 (451)
T 2jlq_A 182 DW----IT-DYQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDI 243 (451)
T ss_dssp HH----HH-HCCSCEEEECSSHHHHHHHHHHHHTT---------TCCEEEECTTT----HHHHGGGGGSSCCSEEEECGG
T ss_pred HH----HH-hCCCCEEEEcCCHHHHHHHHHHHHHc---------CCeEEECCHHH----HHHHHHhhccCCceEEEECCH
Confidence 11 11 12678999999999999999999875 77889999975 357899999999999999999
Q ss_pred cccccccCCeEEEEeCCcccceeecCCCCccccce---eecCHHhHHHHhcccCCCC--CCEEEEccC
Q 008735 351 AETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLV---VPISKAQALQRSGRAGREG--PGKCFRLYP 413 (555)
Q Consensus 351 ~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~---~p~s~~~~~Qr~GRaGR~~--~G~~~~l~~ 413 (555)
+++|||+|+ ++|||+|+.+...|| ..+...+.. .|.|.++|+||+|||||.| +|.|+.++.
T Consensus 244 ~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 244 SEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp GGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred HHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 999999999 999999999999988 445555554 8999999999999999999 789988874
No 28
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.2e-36 Score=319.88 Aligned_cols=287 Identities=18% Similarity=0.188 Sum_probs=196.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCC
Q 008735 48 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDD 127 (555)
Q Consensus 48 ~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~ 127 (555)
+...+.+.++++++++||||||||+++.+.++..... .+.+++++.|+++++.|+.+.+. +..+++......
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~ 83 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQ 83 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC----
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccc
Confidence 3335557789999999999999997655555443222 35679999999999999998764 222332221111
Q ss_pred C----------CCchhhHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhh
Q 008735 128 R----------TSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMIL 197 (555)
Q Consensus 128 ~----------~~~~~~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l 197 (555)
. .........++.++.++++++|||||||+++...+..++++......
T Consensus 84 ~~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~---------------------- 141 (459)
T 2z83_A 84 REHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVEL---------------------- 141 (459)
T ss_dssp ----CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHT----------------------
T ss_pred cCCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhcc----------------------
Confidence 0 00111122455567789999999999999877777777776654321
Q ss_pred ccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhh-CCCCeEEeCCccccceEEEcCCCCCChHHHHHHHHHHH
Q 008735 198 DRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYF-GCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQV 276 (555)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 276 (555)
++.++++||||++.+. ..+. ...++..+.. ..+...+. .....+
T Consensus 142 --------------------~~~~~il~SAT~~~~~-~~~~~~~~pi~~~~~----------~~~~~~~~-~~~~~l--- 186 (459)
T 2z83_A 142 --------------------GEAAAIFMTATPPGTT-DPFPDSNAPIHDLQD----------EIPDRAWS-SGYEWI--- 186 (459)
T ss_dssp --------------------TSCEEEEECSSCTTCC-CSSCCCSSCEEEEEC----------CCCSSCCS-SCCHHH---
T ss_pred --------------------CCccEEEEEcCCCcch-hhhccCCCCeEEecc----------cCCcchhH-HHHHHH---
Confidence 5789999999996432 1111 1233332211 11111110 000111
Q ss_pred HhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccc
Q 008735 277 HLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVT 356 (555)
Q Consensus 277 ~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvd 356 (555)
.. .++++||||+++++++.+++.|.+. ++.+..+||. +|.++++.|++|+.+|||||+++++|||
T Consensus 187 -~~-~~~~~LVF~~s~~~~~~l~~~L~~~---------g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiD 251 (459)
T 2z83_A 187 -TE-YAGKTVWFVASVKMGNEIAMCLQRA---------GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGAN 251 (459)
T ss_dssp -HH-CCSCEEEECSCHHHHHHHHHHHHHT---------TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CC
T ss_pred -Hh-cCCCEEEEeCChHHHHHHHHHHHhc---------CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCee
Confidence 11 2678999999999999999999886 7889999984 7889999999999999999999999999
Q ss_pred cCCeEEEEeCCcccceeec--CCCCccccceeecCHHhHHHHhcccCCCC--CCEEEEccChh
Q 008735 357 IPGIKYVIDPGFVKARLYD--PVKGMESLLVVPISKAQALQRSGRAGREG--PGKCFRLYPEN 415 (555)
Q Consensus 357 ip~v~~VId~g~~~~~~yd--~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l~~~~ 415 (555)
+|+ ++|||+|..+...|+ ....+..+-..|.|.++|+||+|||||.| +|.||.+++..
T Consensus 252 ip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 252 FGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999 999999988877764 22222222348999999999999999998 89999999765
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.3e-36 Score=311.66 Aligned_cols=311 Identities=15% Similarity=0.129 Sum_probs=208.8
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 30 RRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 30 ~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
.+.+.+++...+.++++|.++++.+.+|+++++++|||||||.....+++... ..+.+++++.|+++++.|+.+.+..
T Consensus 9 ~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 9 DFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQK 86 (414)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHH
Confidence 46667777778899999999999999999999999999999963333333321 3466899999999999999999888
Q ss_pred HhCCccCCEEEEEEecCC------------------CCCchhhHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHH
Q 008735 110 ESGVELGQRVGYSIRFDD------------------RTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKK 171 (555)
Q Consensus 110 ~~~~~~~~~vg~~~~~~~------------------~~~~~~~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~ 171 (555)
... .+..++....... .+.+..++...+....+.++++||+||||+...+...
T Consensus 87 ~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~------- 157 (414)
T 3oiy_A 87 LAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRN------- 157 (414)
T ss_dssp HCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHH-------
T ss_pred Hcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccch-------
Confidence 644 3444443222111 1112222222222234678999999999953222100
Q ss_pred HHHhhcccccCCCCCCCCCCcchhhhc-cCCCCc-ccchhhhcc-----cc--CCCCceEEEeccCC-CHH---H-HHhh
Q 008735 172 VQNARSKSADGHSNGNNNNENSDMILD-RGNDTN-GINTLKQCQ-----GR--KFAPLKLIIMSASL-DAR---G-FSEY 237 (555)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~d~~l~-~~~~~~-~~~~l~~~~-----~~--~~~~~~ii~~SAT~-~~~---~-~~~~ 237 (555)
.|.+++ .++... +..++..+. .. ...+.+++++|||+ +.. . +..+
T Consensus 158 ---------------------~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 216 (414)
T 3oiy_A 158 ---------------------IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDL 216 (414)
T ss_dssp ---------------------HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHH
T ss_pred ---------------------hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHh
Confidence 134455 555544 444444332 01 11568999999995 322 2 2233
Q ss_pred hCCCCeEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeE
Q 008735 238 FGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLV 317 (555)
Q Consensus 238 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~ 317 (555)
++ ..+.........+...+... +........+.. .++++||||+++++++.+++.|.+. ++.
T Consensus 217 ~~-~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~ 278 (414)
T 3oiy_A 217 LN-FTVGRLVSVARNITHVRISS---RSKEKLVELLEI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFN 278 (414)
T ss_dssp HS-CCSSCCCCCCCSEEEEEESS---CCHHHHHHHHHH-----HCSSEEEEESSHHHHHHHHHHHHHT---------TCC
T ss_pred hc-cCcCccccccccchheeecc---CHHHHHHHHHHH-----cCCCEEEEECCHHHHHHHHHHHHHc---------CCc
Confidence 32 11111111122333333333 222222222222 2478999999999999999999886 778
Q ss_pred EE-EecCCCCHHHHHhhcCcCCCCCcEEEEe----cCccccccccCC-eEEEEeCCcccceeecCCCCccccceee--cC
Q 008735 318 TV-PIFSSLPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVKARLYDPVKGMESLLVVP--IS 389 (555)
Q Consensus 318 v~-~lh~~l~~~~r~~i~~~f~~g~~~vlva----T~~~e~Gvdip~-v~~VId~g~~~~~~yd~~~~~~~l~~~p--~s 389 (555)
+. .+||+ +|. ++.|++|+.+|||| |+++++|+|+|+ |++||+ || .| .+
T Consensus 279 ~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~--------~~----------~p~~~~ 334 (414)
T 3oiy_A 279 VGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF--------WG----------TPSGPD 334 (414)
T ss_dssp EEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE--------ES----------CCTTTC
T ss_pred eehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE--------EC----------CCCCCC
Confidence 87 88985 444 99999999999999 999999999999 999999 77 57 89
Q ss_pred HHhHHHHhcccCCCC-----CCEEEEccCh
Q 008735 390 KAQALQRSGRAGREG-----PGKCFRLYPE 414 (555)
Q Consensus 390 ~~~~~Qr~GRaGR~~-----~G~~~~l~~~ 414 (555)
..+|+||+|||||.| .|.|+.++.+
T Consensus 335 ~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~ 364 (414)
T 3oiy_A 335 VYTYIQASGRSSRILNGVLVKGVSVIFEED 364 (414)
T ss_dssp HHHHHHHHGGGCCEETTEECCEEEEEECCC
T ss_pred HHHHHHHhCccccCCCCCCcceEEEEEEcc
Confidence 999999999999986 6899999943
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-37 Score=328.88 Aligned_cols=321 Identities=14% Similarity=0.195 Sum_probs=193.1
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhcC--CeEEEEcCCCCchhhHHHHHHHhccccC-CCcEEEEeCccHHHHHHHHHH
Q 008735 30 RRQKILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 30 ~~~~~~~~~~~l~~~~~Q~~~i~~i~~~--~~~ii~apTGsGKT~~l~~~i~~~~~~~-~~~~i~~~~P~r~l~~~~~~~ 106 (555)
...+.+...++..++++|+++++.+.++ +++++++|||||||.++..+++...... .+.+++++.|++.++.|+.++
T Consensus 129 ~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~ 208 (508)
T 3fho_A 129 XXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDV 208 (508)
T ss_dssp ----------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHH
T ss_pred ccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHH
Confidence 3445566667778999999999999998 9999999999999977666666554332 255899999999999999999
Q ss_pred HHHHhCCc-cCCEEEEEEec--------CCCCCchhhHHHhhcC--CCCCCCceeEeecccccccchhHHHHHHHHHHHh
Q 008735 107 VAEESGVE-LGQRVGYSIRF--------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 175 (555)
Q Consensus 107 ~~~~~~~~-~~~~vg~~~~~--------~~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~ 175 (555)
+.+..... +....++.... +..+.+...+...+.. ..+.++++||+||+|+....... ...+..+...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~-~~~~~~i~~~ 287 (508)
T 3fho_A 209 VTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGL-GDQSMRIKHL 287 (508)
T ss_dssp HHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--C-HHHHHHHHHH
T ss_pred HHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCc-HHHHHHHHHh
Confidence 88775422 11111111110 1112223333333322 23788999999999964432111 1111111111
Q ss_pred hcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCC--HHHHHhhh-CCCCeEEeCCcccc
Q 008735 176 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFSEYF-GCAKAVHVQGRQFP 252 (555)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~--~~~~~~~~-~~~~~~~~~~~~~~ 252 (555)
+. .+.++++||||++ .+.+...+ +....+.+......
T Consensus 288 ------------------------------------~~----~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~ 327 (508)
T 3fho_A 288 ------------------------------------LP----RNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELS 327 (508)
T ss_dssp ------------------------------------SC----TTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC--
T ss_pred ------------------------------------CC----cCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCC
Confidence 11 5789999999995 45555444 33333333322221
Q ss_pred ---ceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHH
Q 008735 253 ---VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 329 (555)
Q Consensus 253 ---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 329 (555)
+...+...... ......+..+.....++++||||+++++++.+++.|.+. +..+..+||+++.++
T Consensus 328 ~~~~~~~~~~~~~~---~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~---------~~~v~~~hg~~~~~~ 395 (508)
T 3fho_A 328 VEGIKQLYMDCQSE---EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD---------GHTVACLTGNLEGAQ 395 (508)
T ss_dssp --CCCCEEEEC--C---HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTT---------TCCCCEEC-----CT
T ss_pred cccceEEEEECCch---HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHH
Confidence 11222221111 223334444555556789999999999999999998764 778999999999999
Q ss_pred HHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEE
Q 008735 330 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 408 (555)
Q Consensus 330 r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~ 408 (555)
|..+++.|++|+.+|||||+++++|+|+|++++||+ ||..... ..+.+..+|+||+|||||.| +|.|
T Consensus 396 R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~--------~~~p~~~----~~~~s~~~~~Qr~GRagR~g~~g~~ 463 (508)
T 3fho_A 396 RDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN--------YDMPLDQ----AGRPDPQTYLHRIGRTGRFGRVGVS 463 (508)
T ss_dssp TGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC------------CC---------CTHHHHHTTSCCC-----CEE
T ss_pred HHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE--------ECCCCcc----cCCCCHHHHHHHhhhcCCCCCCcEE
Confidence 999999999999999999999999999999999998 6521110 01267899999999999999 8999
Q ss_pred EEccChh
Q 008735 409 FRLYPEN 415 (555)
Q Consensus 409 ~~l~~~~ 415 (555)
+.++...
T Consensus 464 i~l~~~~ 470 (508)
T 3fho_A 464 INFVHDK 470 (508)
T ss_dssp EEEECTT
T ss_pred EEEEeCh
Confidence 9999753
No 31
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.7e-36 Score=327.84 Aligned_cols=292 Identities=17% Similarity=0.199 Sum_probs=207.9
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCC
Q 008735 38 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 117 (555)
Q Consensus 38 ~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~ 117 (555)
+..+|++.. .++.+.+|++++++||||||||+.+...++..... .+.+++++.|+++++.|+.+.+. +.
T Consensus 170 ~~~lpiq~~---~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl~PtreLa~Qi~~~l~-------~~ 238 (618)
T 2whx_A 170 RIGEPDYEV---DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLILAPTRVVAAEMEEALR-------GL 238 (618)
T ss_dssp CCCCCCCCC---CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TS
T ss_pred ccCCCcccc---CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEcChHHHHHHHHHHhc-------CC
Confidence 555666533 58999999999999999999997644433332221 35579999999999999987664 23
Q ss_pred EEEEEEecCCCCCch-h---------hHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCC
Q 008735 118 RVGYSIRFDDRTSTS-T---------RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 187 (555)
Q Consensus 118 ~vg~~~~~~~~~~~~-~---------~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~ 187 (555)
.++|.........+. . ....+..++.++++++||+||||+.+...+..+..+.+.+. +
T Consensus 239 ~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~-~----------- 306 (618)
T 2whx_A 239 PIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE-M----------- 306 (618)
T ss_dssp CEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-H-----------
T ss_pred ceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhc-c-----------
Confidence 445443321111111 1 11244556778999999999999987666666666665542 2
Q ss_pred CCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhC-CCCeEEeCCccccceEEEcCCCCCChH
Q 008735 188 NNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLYPEPDYL 266 (555)
Q Consensus 188 ~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~ 266 (555)
++.|+++||||++.. ...+.. +.+.+.+... + +...+
T Consensus 307 ------------------------------~~~q~il~SAT~~~~-~~~~~~~~~~~~~v~~~-------~---~~~~~- 344 (618)
T 2whx_A 307 ------------------------------GEAAAIFMTATPPGS-TDPFPQSNSPIEDIERE-------I---PERSW- 344 (618)
T ss_dssp ------------------------------TSCEEEEECSSCTTC-CCSSCCCSSCEEEEECC-------C---CSSCC-
T ss_pred ------------------------------cCccEEEEECCCchh-hhhhhccCCceeeeccc-------C---CHHHH-
Confidence 568999999999544 223332 2223333221 1 11111
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEE
Q 008735 267 DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVIL 346 (555)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlv 346 (555)
...+..+. . .++++||||+|+++++.+++.|.+. ++.+..+||+ +|.++++.|++|+.+|||
T Consensus 345 ~~ll~~l~----~-~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~v~~lhg~----~R~~~l~~F~~g~~~VLV 406 (618)
T 2whx_A 345 NTGFDWIT----D-YQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRK----TFDTEYPKTKLTDWDFVV 406 (618)
T ss_dssp SSSCHHHH----H-CCSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTT----THHHHTTHHHHSCCSEEE
T ss_pred HHHHHHHH----h-CCCCEEEEECChhHHHHHHHHHHHc---------CCcEEEEChH----HHHHHHHhhcCCCcEEEE
Confidence 01111111 1 2678999999999999999999986 7789999984 788899999999999999
Q ss_pred ecCccccccccCCeEEEEeCCcccceee--cCCCCccccceeecCHHhHHHHhcccCCCC--CCEEEEccC
Q 008735 347 ATNIAETSVTIPGIKYVIDPGFVKARLY--DPVKGMESLLVVPISKAQALQRSGRAGREG--PGKCFRLYP 413 (555)
Q Consensus 347 aT~~~e~Gvdip~v~~VId~g~~~~~~y--d~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l~~ 413 (555)
|||++++|||+| +++|||+|+...+.+ |...++......|.+.++|+||+|||||.| +|.||.+++
T Consensus 407 aTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 407 TTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp ECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 999999999997 999999999777655 333344445568999999999999999996 899999997
No 32
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=9e-37 Score=330.80 Aligned_cols=310 Identities=20% Similarity=0.184 Sum_probs=209.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCC-Cch
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRT-STS 132 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~ 132 (555)
..++++++++||||||||+.+...+... ...+++.|+|+++.|+++++.+. +.. ++...+..... .+.
T Consensus 152 ~l~rk~vlv~apTGSGKT~~al~~l~~~------~~gl~l~PtR~LA~Qi~~~l~~~-g~~----v~lltG~~~~iv~Tp 220 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTYHAIQKYFSA------KSGVYCGPLKLLAHEIFEKSNAA-GVP----CDLVTGEERVTVQPN 220 (677)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHS------SSEEEEESSHHHHHHHHHHHHHT-TCC----EEEECSSCEECCSTT
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhc------CCeEEEeCHHHHHHHHHHHHHhc-CCc----EEEEECCeeEEecCC
Confidence 4578999999999999998666665554 12377899999999999998653 433 33333222111 111
Q ss_pred hhHHHh-----hcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccc
Q 008735 133 TRIKEA-----LLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGIN 207 (555)
Q Consensus 133 ~~i~~~-----~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 207 (555)
.+...+ ...+....++++||||+|+ +++.+++..+..
T Consensus 221 Gr~~~il~~T~e~~~l~~~v~lvVIDEaH~--------------------------------------l~d~~~g~~~~~ 262 (677)
T 3rc3_A 221 GKQASHVSCTVEMCSVTTPYEVAVIDEIQM--------------------------------------IRDPARGWAWTR 262 (677)
T ss_dssp CCCCSEEEEEGGGCCSSSCEEEEEECSGGG--------------------------------------GGCTTTHHHHHH
T ss_pred CcccceeEecHhHhhhcccCCEEEEeccee--------------------------------------cCCccchHHHHH
Confidence 111111 1123457789999999994 444455555555
Q ss_pred hhhhccccCCCCceEEEeccCC-CHHHHHhhhCCCCeEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEE
Q 008735 208 TLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDIL 286 (555)
Q Consensus 208 ~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 286 (555)
++..+.. .+.+++++|||. ....+....+....+....+..+ ..+....... .... .+..+
T Consensus 263 ~l~~l~~---~~i~il~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~--l~~~~~~l~~------------l~~~-~~g~i 324 (677)
T 3rc3_A 263 ALLGLCA---EEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTP--ISVLDHALES------------LDNL-RPGDC 324 (677)
T ss_dssp HHHHCCE---EEEEEEECGGGHHHHHHHHHHHTCCEEEEECCCSSC--EEECSSCCCS------------GGGC-CTTEE
T ss_pred HHHccCc---cceEEEeccchHHHHHHHHHhcCCceEEEEeeecch--HHHHHHHHHH------------HHhc-CCCCE
Confidence 5554442 568999999997 33444444443222222122222 2221111110 1111 23458
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCC--CCcEEEEecCccccccccCCeEEEE
Q 008735 287 VFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA--GFRKVILATNIAETSVTIPGIKYVI 364 (555)
Q Consensus 287 VF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~--g~~~vlvaT~~~e~Gvdip~v~~VI 364 (555)
|||+++++++.+++.|.+. ++.+..+||+|++++|.++++.|++ |.++|||||+++++|||+ ++++||
T Consensus 325 If~~s~~~ie~la~~L~~~---------g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI 394 (677)
T 3rc3_A 325 IVCFSKNDIYSVSRQIEIR---------GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRII 394 (677)
T ss_dssp EECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEE
T ss_pred EEEcCHHHHHHHHHHHHhc---------CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEE
Confidence 8899999999999999885 7889999999999999999999998 889999999999999999 899999
Q ss_pred eCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC----CCEEEEccChh--hHhcccCCCCCcccccCchHHHH
Q 008735 365 DPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG----PGKCFRLYPEN--EFDKLEDSTKPEIKRCNLSNVIL 438 (555)
Q Consensus 365 d~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~----~G~~~~l~~~~--~~~~~~~~~~pei~~~~l~~~~l 438 (555)
++|+.+. .||+..+.. ..|.|.++|+||+|||||.| +|.|+.+++++ .+..+.....+++.+.++....+
T Consensus 395 ~~~~~k~-~~~~~G~~~---~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~ 470 (677)
T 3rc3_A 395 FYSLIKP-SINEKGERE---LEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAE 470 (677)
T ss_dssp ESCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHH
T ss_pred ECCcccc-ccccCCccc---cccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHH
Confidence 9999887 677664332 36999999999999999999 48999999877 55667777788888876666555
Q ss_pred HHhhcC
Q 008735 439 QLKALG 444 (555)
Q Consensus 439 ~l~~~~ 444 (555)
+++.++
T Consensus 471 ~l~~~~ 476 (677)
T 3rc3_A 471 QIEMFA 476 (677)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555443
No 33
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.1e-35 Score=310.64 Aligned_cols=280 Identities=18% Similarity=0.157 Sum_probs=187.3
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCch
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 132 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 132 (555)
.+.+|++++++||||||||..+...++..... ++.+++++.|+++++.|+.+.+.. ..+++....-....+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-~~~~~lil~Ptr~La~Q~~~~l~~-------~~v~~~~~~~~~v~Tp 75 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLAPTRVVLSEMKEAFHG-------LDVKFHTQAFSAHGSG 75 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTT-------SCEEEESSCCCCCCCS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-cCCeEEEEcchHHHHHHHHHHHhc-------CCeEEecccceeccCC
Confidence 35689999999999999996654444332221 345789999999999999987642 2233333221112222
Q ss_pred hhH----------HHhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCC
Q 008735 133 TRI----------KEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGND 202 (555)
Q Consensus 133 ~~i----------~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~ 202 (555)
..+ ..++....+++++++|+||+|+.+...+..++.+.+... +
T Consensus 76 ~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~-------------------------- 128 (440)
T 1yks_A 76 REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-A-------------------------- 128 (440)
T ss_dssp SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-T--------------------------
T ss_pred ccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-c--------------------------
Confidence 111 133344568899999999999986666666666655442 1
Q ss_pred CcccchhhhccccCCCCceEEEeccCCCHHHHHhhhC-CCCeEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHhcCC
Q 008735 203 TNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEA 281 (555)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (555)
.+.++++||||++... ..+.. ..++.. .....+.... ...+..+.. .
T Consensus 129 ---------------~~~~~l~~SAT~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~l~~-----~ 176 (440)
T 1yks_A 129 ---------------NESATILMTATPPGTS-DEFPHSNGEIED----------VQTDIPSEPW-NTGHDWILA-----D 176 (440)
T ss_dssp ---------------TSCEEEEECSSCTTCC-CSSCCCSSCEEE----------EECCCCSSCC-SSSCHHHHH-----C
T ss_pred ---------------CCceEEEEeCCCCchh-hhhhhcCCCeeE----------eeeccChHHH-HHHHHHHHh-----c
Confidence 5689999999995442 11211 111111 1111111110 011111111 2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeE
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIK 361 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~ 361 (555)
++++||||+++++++.+++.|.+. ++.+..+|| ++|.++++.|++|+.+|||||+++++|||+| ++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~---------~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~ 242 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA---------GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VE 242 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT---------TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc---------CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ce
Confidence 678999999999999999999885 778999999 5788999999999999999999999999999 99
Q ss_pred EEEeCCcccceee-cCCCCccccceeecCHHhHHHHhcccCCC-C-CCEEEEccC
Q 008735 362 YVIDPGFVKARLY-DPVKGMESLLVVPISKAQALQRSGRAGRE-G-PGKCFRLYP 413 (555)
Q Consensus 362 ~VId~g~~~~~~y-d~~~~~~~l~~~p~s~~~~~Qr~GRaGR~-~-~G~~~~l~~ 413 (555)
+|||+|+...+.| |...++......|.+.++|+||+|||||. + +|.||.++.
T Consensus 243 ~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 243 RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp EEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred EEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 9999999887776 33334444455799999999999999997 4 999999983
No 34
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.5e-36 Score=334.29 Aligned_cols=136 Identities=16% Similarity=0.258 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEe--------cCCCCHHHHHhhcCcCCC-CCcEEEEecCcc
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI--------FSSLPSEQQMRVFAPAAA-GFRKVILATNIA 351 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~l--------h~~l~~~~r~~i~~~f~~-g~~~vlvaT~~~ 351 (555)
+++++||||+++..++.+++.|.+... ...+.+..+ ||+|+.++|.++++.|++ |+.+|||||+++
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~-----~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~ 471 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPK-----LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 471 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTT-----CCSCCEEC-----------------------------CCSCSEEEESS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCC-----ccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechh
Confidence 567899999999999999999987510 012566666 669999999999999998 999999999999
Q ss_pred ccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhH----------hccc
Q 008735 352 ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF----------DKLE 421 (555)
Q Consensus 352 e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~----------~~~~ 421 (555)
++|||+|++++||+ || .|.+..+|+||+|| ||.++|.|+.++++.+. +.+.
T Consensus 472 ~~GiDip~v~~VI~--------~d----------~p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~ 532 (696)
T 2ykg_A 472 DEGIDIAQCNLVIL--------YE----------YVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMM 532 (696)
T ss_dssp CCC---CCCSEEEE--------ES----------CC--CCCC----------CCCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcCCcCccCCEEEE--------eC----------CCCCHHHHHHhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999 88 57788899999999 99999999999987766 3333
Q ss_pred CCCCCcccccCchHHHHHH
Q 008735 422 DSTKPEIKRCNLSNVILQL 440 (555)
Q Consensus 422 ~~~~pei~~~~l~~~~l~l 440 (555)
....+++.+.+...++..+
T Consensus 533 ~~~~~~~~~~~~~~~~~~i 551 (696)
T 2ykg_A 533 NDSILRLQTWDEAVFREKI 551 (696)
T ss_dssp HHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhhccCHHHHHHHH
Confidence 3444455555555444433
No 35
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3.4e-35 Score=319.45 Aligned_cols=291 Identities=17% Similarity=0.201 Sum_probs=201.9
Q ss_pred CcHHHHH-----HHHHHHh------cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHH
Q 008735 42 PIASVEK-----RLVEEVR------KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 110 (555)
Q Consensus 42 ~~~~~Q~-----~~i~~i~------~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~ 110 (555)
.++++|+ ++++.+. ++++++++||||||||+.+...++..... .+.+++++.|+++++.|+.+.+...
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-~~~~~lilaPTr~La~Q~~~~l~~~ 293 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-KRLRTAVLAPTRVVAAEMAEALRGL 293 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEccHHHHHHHHHHHHhcC
Confidence 5777888 8888777 89999999999999997644444332221 3467899999999999998876422
Q ss_pred hCCccCCEEEEEEecCCCCCchh----------hHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccc
Q 008735 111 SGVELGQRVGYSIRFDDRTSTST----------RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 180 (555)
Q Consensus 111 ~~~~~~~~vg~~~~~~~~~~~~~----------~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~ 180 (555)
.+++.........+.. ....++.+..++++++|||||+|+.+...+..+..++.....
T Consensus 294 -------~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~----- 361 (673)
T 2wv9_A 294 -------PVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEA----- 361 (673)
T ss_dssp -------CCEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHT-----
T ss_pred -------CeeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccc-----
Confidence 1222221111011111 112444556789999999999999877766777766665421
Q ss_pred cCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhC-CCCeEEeCCccccceEEEcC
Q 008735 181 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTL 259 (555)
Q Consensus 181 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~ 259 (555)
.+.++++||||++... .++.. ..++..+.. .
T Consensus 362 -------------------------------------~~~~vl~~SAT~~~~i-~~~~~~~~~i~~v~~----------~ 393 (673)
T 2wv9_A 362 -------------------------------------GEAAAIFMTATPPGTS-DPFPDTNSPVHDVSS----------E 393 (673)
T ss_dssp -------------------------------------TSCEEEEECSSCTTCC-CSSCCCSSCEEEEEC----------C
T ss_pred -------------------------------------cCCcEEEEcCCCChhh-hhhcccCCceEEEee----------e
Confidence 4679999999996431 11211 222222211 1
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCC
Q 008735 260 YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA 339 (555)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~ 339 (555)
.+.... ...+..+ . ..++++||||+++++++.+++.|.+. ++.+..+|| ++|.++++.|++
T Consensus 394 ~~~~~~-~~~l~~l----~-~~~~~~lVF~~s~~~~e~la~~L~~~---------g~~v~~lHg----~eR~~v~~~F~~ 454 (673)
T 2wv9_A 394 IPDRAW-SSGFEWI----T-DYAGKTVWFVASVKMSNEIAQCLQRA---------GKRVIQLNR----KSYDTEYPKCKN 454 (673)
T ss_dssp CCSSCC-SSCCHHH----H-SCCSCEEEECSSHHHHHHHHHHHHTT---------TCCEEEECS----SSHHHHGGGGGT
T ss_pred cCHHHH-HHHHHHH----H-hCCCCEEEEECCHHHHHHHHHHHHhC---------CCeEEEeCh----HHHHHHHHHHHC
Confidence 111110 0111111 1 24789999999999999999999875 788999999 489999999999
Q ss_pred CCcEEEEecCccccccccCCeEEEEeCCcccce--eecCCCCccccceeecCHHhHHHHhcccCCC-C-CCEEEEccC
Q 008735 340 GFRKVILATNIAETSVTIPGIKYVIDPGFVKAR--LYDPVKGMESLLVVPISKAQALQRSGRAGRE-G-PGKCFRLYP 413 (555)
Q Consensus 340 g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~--~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~-~-~G~~~~l~~ 413 (555)
|+++|||||+++++|||+| +++|||+|....+ .||...++..+...|.+.++|+||+|||||. + .|.||.++.
T Consensus 455 g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 455 GDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp CCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred CCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 9999999999999999999 9999999876554 3565545544455899999999999999999 4 899999973
No 36
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.6e-34 Score=301.29 Aligned_cols=275 Identities=17% Similarity=0.201 Sum_probs=190.5
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCc----
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST---- 131 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~---- 131 (555)
+|++++++||||||||..+...++.... ..+.+++++.|+++++.|+.+.+. + ..+++..........
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~-~~g~~~lvl~Pt~~La~Q~~~~~~---~----~~v~~~~~~~~~~~~~~~~ 72 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAV-KKRLRTVILAPTRVVASEMYEALR---G----EPIRYMTPAVQSERTGNEI 72 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTT---T----SCEEEC---------CCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEECcHHHHHHHHHHHhC---C----CeEEEEecCccccCCCCce
Confidence 4789999999999999665333332221 235579999999999999887653 2 233333221111111
Q ss_pred ------hhhHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcc
Q 008735 132 ------STRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNG 205 (555)
Q Consensus 132 ------~~~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 205 (555)
......++.++.+.++++|||||+|+.+...+..+..++.... +
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~-~----------------------------- 122 (431)
T 2v6i_A 73 VDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVS-M----------------------------- 122 (431)
T ss_dssp EEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-T-----------------------------
T ss_pred EEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhh-C-----------------------------
Confidence 1111234456678999999999999987666777777666542 2
Q ss_pred cchhhhccccCCCCceEEEeccCCCHHHHHhhhC-CCCeEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCc
Q 008735 206 INTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGD 284 (555)
Q Consensus 206 ~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (555)
++.++++||||++... .++.. ..++..+... .+.... ... ...... .+++
T Consensus 123 ------------~~~~~l~~SAT~~~~~-~~~~~~~~~i~~~~~~----------~~~~~~-~~~----~~~l~~-~~~~ 173 (431)
T 2v6i_A 123 ------------GDAGAIFMTATPPGTT-EAFPPSNSPIIDEETR----------IPDKAW-NSG----YEWITE-FDGR 173 (431)
T ss_dssp ------------TSCEEEEEESSCTTCC-CSSCCCSSCCEEEECC----------CCSSCC-SSC----CHHHHS-CSSC
T ss_pred ------------CCCcEEEEeCCCCcch-hhhcCCCCceeecccc----------CCHHHH-HHH----HHHHHc-CCCC
Confidence 5789999999996431 12211 2222222111 111111 000 111112 3678
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEE
Q 008735 285 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 364 (555)
Q Consensus 285 iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VI 364 (555)
+||||+++++++.+++.|.+. ++.+..+||+ +|.++++.|++|+.+|||||+++++|||+| +.+||
T Consensus 174 ~lVF~~~~~~~~~l~~~L~~~---------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI 239 (431)
T 2v6i_A 174 TVWFVHSIKQGAEIGTCLQKA---------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVI 239 (431)
T ss_dssp EEEECSSHHHHHHHHHHHHHT---------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHc---------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEE
Confidence 999999999999999999875 7789999997 678899999999999999999999999999 99999
Q ss_pred eCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEcc
Q 008735 365 DPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 412 (555)
Q Consensus 365 d~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~ 412 (555)
++|..+.+.|| ..++......|.+.++|+||+||+||.| .+.|+.+|
T Consensus 240 ~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 240 DPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp ECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred ecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 99999988888 5556556678999999999999999998 34444444
No 37
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.8e-34 Score=309.56 Aligned_cols=120 Identities=16% Similarity=0.225 Sum_probs=59.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHh--hcCC-CCCCCeEEEEecCCCCHHHHHhhcCcCCC-CCcEEEEecCcccccc
Q 008735 280 EAPGDILVFLTGQEEIESVERLVQERL--LQLP-EASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 355 (555)
Q Consensus 280 ~~~~~iLVF~~t~~~~~~l~~~L~~~~--~~~~-~~~~~~~v~~lh~~l~~~~r~~i~~~f~~-g~~~vlvaT~~~e~Gv 355 (555)
..++++||||+++..++.+++.|.+.. .... ....+.....+||+|+.++|.++++.|++ |..+|||||+++++||
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 457899999999999999999997631 0000 00114455667899999999999999999 9999999999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHh
Q 008735 356 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 418 (555)
Q Consensus 356 dip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 418 (555)
|+|++++||+ || .|.+...|+||+|| ||.++|.||.|+++.+.+
T Consensus 468 Dip~v~~VI~--------~d----------~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 468 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 511 (556)
T ss_dssp -----CEEEE--------ET----------CCSCHHHHHHC---------CCEEEEESCHHHH
T ss_pred CchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCceEEEEEeCcchH
Confidence 9999999999 88 68999999999999 999999999999877653
No 38
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4e-33 Score=295.84 Aligned_cols=112 Identities=23% Similarity=0.382 Sum_probs=101.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecC--------CCCHHHHHhhcCcCCCCCcEEEEecCcc
Q 008735 280 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS--------SLPSEQQMRVFAPAAAGFRKVILATNIA 351 (555)
Q Consensus 280 ~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~--------~l~~~~r~~i~~~f~~g~~~vlvaT~~~ 351 (555)
..++++||||++++.++.+++.|.+. ++.+..+|| +|+.++|.++++.|++|..+|||||+++
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~ 429 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKD---------GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVG 429 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGG
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCcc
Confidence 45789999999999999999999886 788999999 9999999999999999999999999999
Q ss_pred ccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHh
Q 008735 352 ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 418 (555)
Q Consensus 352 e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 418 (555)
++|+|+|++++||+ || .|.+...|.||+|||||.|+|.+|.|+++...+
T Consensus 430 ~~Gldl~~~~~Vi~--------~d----------~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~e 478 (494)
T 1wp9_A 430 EEGLDVPEVDLVVF--------YE----------PVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRD 478 (494)
T ss_dssp GGGGGSTTCCEEEE--------SS----------CCHHHHHHHHHHTTSCSCCCSEEEEEEETTSHH
T ss_pred ccCCCchhCCEEEE--------eC----------CCCCHHHHHHHHhhccCCCCceEEEEEecCCHH
Confidence 99999999999998 77 578899999999999999999999999876544
No 39
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=8.4e-34 Score=306.71 Aligned_cols=120 Identities=19% Similarity=0.300 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhcC---CCCCCCeEEEEecCCCCHHHHHhhcCcCCC-CCcEEEEecCcccccc
Q 008735 280 EAPGDILVFLTGQEEIESVERLVQERLLQL---PEASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 355 (555)
Q Consensus 280 ~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~---~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~-g~~~vlvaT~~~e~Gv 355 (555)
..++++||||+++..++.+++.|.+..... .....+.....+||+|+.++|.++++.|++ |+.+|||||+++++||
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGI 466 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCC
Confidence 456899999999999999999998752100 000113345566789999999999999999 9999999999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhHh
Q 008735 356 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 418 (555)
Q Consensus 356 dip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 418 (555)
|+|++++||+ || .|.+..+|+||+|| ||..+|.||.|+++.+.+
T Consensus 467 Dlp~v~~VI~--------~d----------~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 467 DIAECNLVIL--------YE----------YVGNVIKMIQTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp ETTSCSEEEE--------ES----------CCSSCCCEECSSCC-CTTTSCEEEEEESCHHHH
T ss_pred ccccCCEEEE--------eC----------CCCCHHHHHHhcCc-CcCCCceEEEEEcCCCHH
Confidence 9999999999 88 57788899999999 999999999999877653
No 40
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.6e-33 Score=312.55 Aligned_cols=119 Identities=16% Similarity=0.251 Sum_probs=64.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhh--cCC-CCCCCeEEEEecCCCCHHHHHhhcCcCCC-CCcEEEEecCcccccc
Q 008735 280 EAPGDILVFLTGQEEIESVERLVQERLL--QLP-EASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 355 (555)
Q Consensus 280 ~~~~~iLVF~~t~~~~~~l~~~L~~~~~--~~~-~~~~~~~v~~lh~~l~~~~r~~i~~~f~~-g~~~vlvaT~~~e~Gv 355 (555)
..++++||||++++.++.+++.|.+... ... ....+.....+||+|+.++|.++++.|++ |..+|||||+++++||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 4568999999999999999999976310 000 00124456677999999999999999999 9999999999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhH
Q 008735 356 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF 417 (555)
Q Consensus 356 dip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~ 417 (555)
|+|++++||+ || .|.+...|+||+|| ||..+|.||.|+++.+.
T Consensus 709 Dlp~v~~VI~--------yd----------~p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 709 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp --CCCSEEEE--------ES----------CCSCHHHHHTC--------CCCEEEEECCHHH
T ss_pred CchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCceEEEEEeCCcH
Confidence 9999999999 88 68899999999999 99999999999987655
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=6.2e-32 Score=310.88 Aligned_cols=305 Identities=18% Similarity=0.188 Sum_probs=210.1
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhc----CC--eEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHH
Q 008735 31 RQKILQQRKSLPIASVEKRLVEEVRK----ND--ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVA 104 (555)
Q Consensus 31 ~~~~~~~~~~l~~~~~Q~~~i~~i~~----~~--~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~ 104 (555)
..+.+.....+.++++|.++++.+.+ ++ +++++||||||||.++..+++... ..+.+++++.|++.++.|..
T Consensus 592 ~~~~~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~--~~g~~vlvlvPt~~La~Q~~ 669 (1151)
T 2eyq_A 592 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV--DNHKQVAVLVPTTLLAQQHY 669 (1151)
T ss_dssp HHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH--TTTCEEEEECSSHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH--HhCCeEEEEechHHHHHHHH
Confidence 33444455566679999999999876 66 999999999999966554444332 23568999999999999999
Q ss_pred HHHHHHhCCccCCEEEEEEecCCCCCchhhHH---------------HhhcCCCCCCCceeEeecccccccchhHHHHHH
Q 008735 105 KRVAEESGVELGQRVGYSIRFDDRTSTSTRIK---------------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLL 169 (555)
Q Consensus 105 ~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~---------------~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l 169 (555)
+.+.+.+.. .+..++...++.........+. .+..+..+.++++|||||+|+.+...... +
T Consensus 670 ~~~~~~~~~-~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~g~~~~~~---l 745 (1151)
T 2eyq_A 670 DNFRDRFAN-WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKER---I 745 (1151)
T ss_dssp HHHHHHSTT-TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHHHHH---H
T ss_pred HHHHHHhhc-CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhcChHHHHH---H
Confidence 998877652 2334443322111100000000 11223457889999999999754432211 1
Q ss_pred HHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeE-EeCC
Q 008735 170 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAV-HVQG 248 (555)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~-~~~~ 248 (555)
+. .+ .+.++++||||+.+..+...+....-. .+..
T Consensus 746 ~~---l~-----------------------------------------~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~ 781 (1151)
T 2eyq_A 746 KA---MR-----------------------------------------ANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 781 (1151)
T ss_dssp HH---HH-----------------------------------------TTSEEEEEESSCCCHHHHHHHTTTSEEEECCC
T ss_pred HH---hc-----------------------------------------CCCCEEEEcCCCChhhHHHHHhcCCCceEEec
Confidence 11 12 567999999999666655444332222 2211
Q ss_pred ---ccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCC
Q 008735 249 ---RQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 325 (555)
Q Consensus 249 ---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 325 (555)
...++......... ......+.... ..+++++|||+++++++.+++.|.+.++ +..+..+||+|
T Consensus 782 ~~~~r~~i~~~~~~~~~----~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p-------~~~v~~lhg~~ 848 (1151)
T 2eyq_A 782 PPARRLAVKTFVREYDS----MVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVP-------EARIAIGHGQM 848 (1151)
T ss_dssp CCCBCBCEEEEEEECCH----HHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCT-------TSCEEECCSSC
T ss_pred CCCCccccEEEEecCCH----HHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCC-------CCeEEEEeCCC
Confidence 11233333322211 22222233222 2478899999999999999999988743 67799999999
Q ss_pred CHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-
Q 008735 326 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG- 404 (555)
Q Consensus 326 ~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~- 404 (555)
+.++|.++++.|++|+.+|||||+++++|||+|++++||. +++ .+.+..+|.||+||+||.|
T Consensus 849 ~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi--------~~~---------~~~~l~~l~Qr~GRvgR~g~ 911 (1151)
T 2eyq_A 849 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERA---------DHFGLAQLHQLRGRVGRSHH 911 (1151)
T ss_dssp CHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE--------TTT---------TSSCHHHHHHHHTTCCBTTB
T ss_pred CHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE--------eCC---------CCCCHHHHHHHHhccCcCCC
Confidence 9999999999999999999999999999999999999996 442 1356788999999999999
Q ss_pred CCEEEEccChh
Q 008735 405 PGKCFRLYPEN 415 (555)
Q Consensus 405 ~G~~~~l~~~~ 415 (555)
.|.||.+++++
T Consensus 912 ~g~~~ll~~~~ 922 (1151)
T 2eyq_A 912 QAYAWLLTPHP 922 (1151)
T ss_dssp CEEEEEEECCG
T ss_pred ceEEEEEECCc
Confidence 99999999754
No 42
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.98 E-value=1.1e-32 Score=303.26 Aligned_cols=303 Identities=19% Similarity=0.249 Sum_probs=201.3
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhcC------CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHH
Q 008735 29 SRRQKILQQRKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVT 102 (555)
Q Consensus 29 ~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~------~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~ 102 (555)
....+++...++ .++++|+++++.+.++ .+++++||||||||..+..+++.... .+.+++++.|+++++.|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~--~g~qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE--AGFQTAFMVPTSILAIQ 432 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH--HTSCEEEECSCHHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHH
Confidence 344455554444 9999999999998875 58999999999999766666654421 25679999999999999
Q ss_pred HHHHHHHHhCCccCCEEEEEEecCCCCCchhhH--H----------------HhhcCCCCCCCceeEeecccccccchhH
Q 008735 103 VAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI--K----------------EALLDPYLSRYSAIIVDEAHERTVHTDV 164 (555)
Q Consensus 103 ~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i--~----------------~~~~~~~l~~~~~iIiDE~He~~~~~d~ 164 (555)
..+.+.+.+.. .+..++.... ......+. . .+.....+.++++||+||+|+.+...
T Consensus 433 ~~~~l~~~~~~-~gi~v~~l~G---~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~q-- 506 (780)
T 1gm5_A 433 HYRRTVESFSK-FNIHVALLIG---ATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQ-- 506 (780)
T ss_dssp HHHHHHHHHTC-SSCCEEECCS---SSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC------
T ss_pred HHHHHHHHhhh-cCceEEEEeC---CCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHHH--
Confidence 99998887742 2333443222 11111110 0 12223457899999999999532111
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHH-hhhCCCCe
Q 008735 165 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS-EYFGCAKA 243 (555)
Q Consensus 165 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~-~~~~~~~~ 243 (555)
+ ..+... ..+.++++||||+.++.+. .+++...+
T Consensus 507 -----------r------------------------------~~l~~~----~~~~~vL~mSATp~p~tl~~~~~g~~~~ 541 (780)
T 1gm5_A 507 -----------R------------------------------EALMNK----GKMVDTLVMSATPIPRSMALAFYGDLDV 541 (780)
T ss_dssp ------------------------------------------CCCCSS----SSCCCEEEEESSCCCHHHHHHHTCCSSC
T ss_pred -----------H------------------------------HHHHHh----CCCCCEEEEeCCCCHHHHHHHHhCCcce
Confidence 0 000000 1467899999999766665 44555444
Q ss_pred EEeCCc---cccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHH--------HHHHHHHHHHHhhcCCCC
Q 008735 244 VHVQGR---QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE--------IESVERLVQERLLQLPEA 312 (555)
Q Consensus 244 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~--------~~~l~~~L~~~~~~~~~~ 312 (555)
..+... ..++...+.. ..........+.... ..+++++|||++.++ ++.+++.|.+. .
T Consensus 542 s~i~~~p~~r~~i~~~~~~---~~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~------~ 610 (780)
T 1gm5_A 542 TVIDEMPPGRKEVQTMLVP---MDRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE------V 610 (780)
T ss_dssp EEECCCCSSCCCCEECCCC---SSTHHHHHHHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGS------C
T ss_pred eeeeccCCCCcceEEEEec---cchHHHHHHHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhh------h
Confidence 443321 2233332222 223333333333322 346789999997654 44444444330 1
Q ss_pred CCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHh
Q 008735 313 SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQ 392 (555)
Q Consensus 313 ~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~ 392 (555)
.+++.+..+||+|+.++|.++++.|++|+.+|||||+++++|||+|++++||+ ||+. ..+.++
T Consensus 611 ~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi--------~d~~---------r~~l~~ 673 (780)
T 1gm5_A 611 FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI--------ENPE---------RFGLAQ 673 (780)
T ss_dssp C---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB--------CSCS---------SSCTTH
T ss_pred cCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE--------eCCC---------CCCHHH
Confidence 13678899999999999999999999999999999999999999999999998 6632 135678
Q ss_pred HHHHhcccCCCC-CCEEEEccC
Q 008735 393 ALQRSGRAGREG-PGKCFRLYP 413 (555)
Q Consensus 393 ~~Qr~GRaGR~~-~G~~~~l~~ 413 (555)
+.||+|||||.| +|.|+.+++
T Consensus 674 l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 674 LHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp HHHHHHTSCCSSTTCEEECCCC
T ss_pred HHHHhcccCcCCCCCEEEEEEC
Confidence 999999999988 999999997
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.98 E-value=1.1e-31 Score=304.69 Aligned_cols=119 Identities=16% Similarity=0.251 Sum_probs=65.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhh--cCC-CCCCCeEEEEecCCCCHHHHHhhcCcCCC-CCcEEEEecCcccccc
Q 008735 280 EAPGDILVFLTGQEEIESVERLVQERLL--QLP-EASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 355 (555)
Q Consensus 280 ~~~~~iLVF~~t~~~~~~l~~~L~~~~~--~~~-~~~~~~~v~~lh~~l~~~~r~~i~~~f~~-g~~~vlvaT~~~e~Gv 355 (555)
..++++||||++++.++.+++.|.+... ... ....+.....+||+|+.++|.++++.|++ |.++|||||+++++||
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCC
Confidence 4468899999999999999999987410 000 00114456677999999999999999999 9999999999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChhhH
Q 008735 356 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF 417 (555)
Q Consensus 356 dip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~ 417 (555)
|+|++++||+ || .|.+..+|+||+|| ||.++|.||.|+++.+.
T Consensus 709 Dlp~v~~VI~--------yD----------~p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 709 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (936)
T ss_dssp -CCCCSEEEE--------ES----------CCSCSHHHHCC--------CCCEEEEESCHHH
T ss_pred cchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCCEEEEEEeCCCH
Confidence 9999999999 88 58889999999999 99999999999976544
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=1.2e-31 Score=306.68 Aligned_cols=283 Identities=15% Similarity=0.140 Sum_probs=184.2
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHh
Q 008735 32 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 111 (555)
Q Consensus 32 ~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~ 111 (555)
.+.+.....+.++++|+++++.+.+|++++++||||||||..+..+++... ..+.+++++.|+++++.|+.+++..+.
T Consensus 68 ~~~~~~~~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 68 RSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhh
Confidence 334445556689999999999999999999999999999964333333322 346689999999999999999988733
Q ss_pred CCccCCEEEEEEecCCC------------------CCchhhHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHHHH
Q 008735 112 GVELGQRVGYSIRFDDR------------------TSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 173 (555)
Q Consensus 112 ~~~~~~~vg~~~~~~~~------------------~~~~~~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~ 173 (555)
..+..++...+.... +.+..++...+....++++++||+||||+.....
T Consensus 146 --~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~----------- 212 (1104)
T 4ddu_A 146 --DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKAS----------- 212 (1104)
T ss_dssp --CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSS-----------
T ss_pred --CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCcccccc-----------
Confidence 334455544332211 1112222222222336789999999999532211
Q ss_pred HhhcccccCCCCCCCCCCcchhhhc-cCCCCc-ccchhhhcc-----cc--CCCCceEEEeccCCCHH-----HHHhhhC
Q 008735 174 NARSKSADGHSNGNNNNENSDMILD-RGNDTN-GINTLKQCQ-----GR--KFAPLKLIIMSASLDAR-----GFSEYFG 239 (555)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~d~~l~-~~~~~~-~~~~l~~~~-----~~--~~~~~~ii~~SAT~~~~-----~~~~~~~ 239 (555)
...|.+++ .++..+ +..++..+. .. ...+.|+++||||+.++ .+..+++
T Consensus 213 -----------------r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~ 275 (1104)
T 4ddu_A 213 -----------------RNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 275 (1104)
T ss_dssp -----------------HHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC
T ss_pred -----------------ccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee
Confidence 01145555 555555 455554433 00 11568999999996332 2223332
Q ss_pred CCCeEEeCCccccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q 008735 240 CAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 319 (555)
Q Consensus 240 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~ 319 (555)
..+.........+...+... +........+.. .++++||||++++.++.++..|.+. ++.+.
T Consensus 276 -i~v~~~~~~~~~i~~~~~~~---~k~~~L~~ll~~-----~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~~~ 337 (1104)
T 4ddu_A 276 -FTVGRLVSVARNITHVRISS---RSKEKLVELLEI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVG 337 (1104)
T ss_dssp -CCCCBCCCCCCCEEEEEESC---CCHHHHHHHHHH-----HCSSEEEEESSSHHHHHHHHHHHHT---------TCCEE
T ss_pred -EEeccCCCCcCCceeEEEec---CHHHHHHHHHHh-----cCCCEEEEECcHHHHHHHHHHHHhC---------CCCee
Confidence 11111111222333444333 222222222222 2488999999999999999999886 78888
Q ss_pred -EecCCCCHHHHHhhcCcCCCCCcEEEEe----cCccccccccCC-eEEEEeCCccc
Q 008735 320 -PIFSSLPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVK 370 (555)
Q Consensus 320 -~lh~~l~~~~r~~i~~~f~~g~~~vlva----T~~~e~Gvdip~-v~~VId~g~~~ 370 (555)
.+|| +|.+ ++.|++|+.+|||| |+++++|||+|+ |++||++|+.+
T Consensus 338 ~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 338 ETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp ESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred eEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 9998 2555 99999999999999 999999999999 99999966665
No 45
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=4.7e-33 Score=309.33 Aligned_cols=110 Identities=16% Similarity=0.247 Sum_probs=88.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCC--------CCHHHHHhhcCcCCCCCcEEEEecCcccc
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS--------LPSEQQMRVFAPAAAGFRKVILATNIAET 353 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~--------l~~~~r~~i~~~f~~g~~~vlvaT~~~e~ 353 (555)
++++||||++++.++.+++.|.+. +. ....++.+..+||+ |+.++|.++++.|++|+.+|||||+++++
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~-~~--l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~ 476 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITEN-EK--FAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEE 476 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSS-CS--CC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhC-cc--ccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Confidence 688999999999999999999763 00 11125788999999 99999999999999999999999999999
Q ss_pred ccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccC
Q 008735 354 SVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYP 413 (555)
Q Consensus 354 Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~ 413 (555)
|||+|++++||+ || .|.+..+|+||+|||||.| +.++.++.
T Consensus 477 GIDip~v~~VI~--------~d----------~p~s~~~~~Qr~GRArr~g-~~~~l~~~ 517 (699)
T 4gl2_A 477 GLDIKECNIVIR--------YG----------LVTNEIAMVQARGRARADE-STYVLVAH 517 (699)
T ss_dssp TSCCCSCCCCEE--------ES----------CCCCHHHHHHHHTTSCSSS-CEEEEEEE
T ss_pred CCccccCCEEEE--------eC----------CCCCHHHHHHHcCCCCCCC-ceEEEEEe
Confidence 999999999999 88 6889999999999988766 44444443
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=6.9e-31 Score=278.28 Aligned_cols=288 Identities=16% Similarity=0.164 Sum_probs=186.8
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCc-cCCEE
Q 008735 41 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE-LGQRV 119 (555)
Q Consensus 41 l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~-~~~~v 119 (555)
+.++++|+++++.+.+++++++++|||+|||.++..++... +.+++++.|++.++.|..+.+.+ ++.. ++...
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~~ 165 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFS 165 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEBS
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEEC
Confidence 57899999999999999999999999999997766666554 45799999999999999998877 5433 22221
Q ss_pred EEEEe-cCCCCCchhhHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhc
Q 008735 120 GYSIR-FDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILD 198 (555)
Q Consensus 120 g~~~~-~~~~~~~~~~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 198 (555)
|.... .+..+.+...+.... +....++++||+||+|......
T Consensus 166 g~~~~~~~Ivv~T~~~l~~~~-~~~~~~~~liIvDEaH~~~~~~------------------------------------ 208 (472)
T 2fwr_A 166 GRIKELKPLTVSTYDSAYVNA-EKLGNRFMLLIFDEVHHLPAES------------------------------------ 208 (472)
T ss_dssp SSCBCCCSEEEEEHHHHHHTH-HHHTTTCSEEEEETGGGTTSTT------------------------------------
T ss_pred CCcCCcCCEEEEEcHHHHHHH-HHhcCCCCEEEEECCcCCCChH------------------------------------
Confidence 10000 000111112211111 1123569999999999522111
Q ss_pred cCCCCcccchhhhccccCCCCceEEEeccCCCHH-----HHHhhhCCCCeEEeC-----Cc-cccce---EEE-------
Q 008735 199 RGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR-----GFSEYFGCAKAVHVQ-----GR-QFPVE---ILY------- 257 (555)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~-----~~~~~~~~~~~~~~~-----~~-~~~v~---~~~------- 257 (555)
...++..+ ...++++||||+... .+..+++. .+.... .. ..+.. ...
T Consensus 209 ------~~~~~~~~-----~~~~~l~lSATp~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 276 (472)
T 2fwr_A 209 ------YVQIAQMS-----IAPFRLGLTATFEREDGRHEILKEVVGG-KVFELFPDSLAGKHLAKYTIKRIFVPLAEDER 276 (472)
T ss_dssp ------THHHHHTC-----CCSEEEEEESCCCCTTSGGGSHHHHTCC-EEEECCHHHHTSCCCCSEEECCEEECCCHHHH
T ss_pred ------HHHHHHhc-----CCCeEEEEecCccCCCCHHHHHHHHhCC-eEeecCHHHHhcCcCCCeEEEEEEcCCCHHHH
Confidence 01111111 456899999999411 23333331 111000 00 00000 000
Q ss_pred ---------------------------cCC-------CC--CCh------------HHHHHHHHHHHHhcCCCCcEEEEc
Q 008735 258 ---------------------------TLY-------PE--PDY------------LDATLITIFQVHLDEAPGDILVFL 289 (555)
Q Consensus 258 ---------------------------~~~-------~~--~~~------------~~~~~~~~~~~~~~~~~~~iLVF~ 289 (555)
... +. ... .......+..+.....++++||||
T Consensus 277 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~ 356 (472)
T 2fwr_A 277 VEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFT 356 (472)
T ss_dssp HHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBC
T ss_pred HHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEE
Confidence 000 00 000 001223344444445678999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcc
Q 008735 290 TGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFV 369 (555)
Q Consensus 290 ~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~ 369 (555)
++++.++.+++.|. +..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 357 ~~~~~~~~l~~~l~--------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~---- 418 (472)
T 2fwr_A 357 RHNELVYRISKVFL--------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI---- 418 (472)
T ss_dssp SCHHHHHHHHHHTT--------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE----
T ss_pred CCHHHHHHHHHHhC--------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE----
Confidence 99999999887662 446899999999999999999999999999999999999999999998
Q ss_pred cceeecCCCCccccceeecCHHhHHHHhcccCCCCCC----EEEEccChh
Q 008735 370 KARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPG----KCFRLYPEN 415 (555)
Q Consensus 370 ~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G----~~~~l~~~~ 415 (555)
|| .|.+...|.||+||+||.|+| .+|.++++.
T Consensus 419 ----~~----------~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 419 ----MS----------GSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp ----EC----------CSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred ----EC----------CCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 77 577889999999999999976 455566543
No 47
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=4.1e-30 Score=294.10 Aligned_cols=277 Identities=14% Similarity=0.125 Sum_probs=163.5
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHH
Q 008735 31 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 110 (555)
Q Consensus 31 ~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~ 110 (555)
+.+.+.+...+++ ++|+++++.+.+|++++++||||||||. +.+.++.... ..+.+++++.|+++++.|+.+.+...
T Consensus 46 ~~~~~~~~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~-~~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 46 FVEFFRKCVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLA-LKGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp HHHHHHTTTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHH-TTSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHh-hcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 3344444444447 9999999999999999999999999994 3333333222 23567999999999999999998876
Q ss_pred hCCccCC----EEEEEEecCC----------------CCCchhhHHHhhcCCCCCCCceeEeecccccccchhHHHHHHH
Q 008735 111 SGVELGQ----RVGYSIRFDD----------------RTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLK 170 (555)
Q Consensus 111 ~~~~~~~----~vg~~~~~~~----------------~~~~~~~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~ 170 (555)
... .+. .++...+... .+.+..++...+.. ++++++||+||||+.......+..+++
T Consensus 123 ~~~-~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~--L~~l~~lViDEah~~l~~~~~~~~i~~ 199 (1054)
T 1gku_B 123 AEK-AGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE--LGHFDFIFVDDVDAILKASKNVDKLLH 199 (1054)
T ss_dssp HTT-TCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT--SCCCSEEEESCHHHHHTSTHHHHHHHH
T ss_pred Hhh-cCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH--hccCCEEEEeChhhhhhccccHHHHHH
Confidence 642 122 3332222111 11122222232222 678999999999952221111111111
Q ss_pred HHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCH-HHHH-hhhCCCCeEEeCC
Q 008735 171 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA-RGFS-EYFGCAKAVHVQG 248 (555)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~-~~~~-~~~~~~~~~~~~~ 248 (555)
. .++...+.. ..+ ..+.+++++|||++. ..+. .+++....+.+..
T Consensus 200 ~---------------------------lgf~~~~~~--~~~----~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~ 246 (1054)
T 1gku_B 200 L---------------------------LGFHYDLKT--KSW----VGEARGCLMVSTATAKKGKKAELFRQLLNFDIGS 246 (1054)
T ss_dssp H---------------------------TTEEEETTT--TEE----EECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSC
T ss_pred H---------------------------hCcchhhhh--hhc----ccCCceEEEEecCCCchhHHHHHhhcceEEEccC
Confidence 1 011111000 001 145688999999843 2221 2222111111211
Q ss_pred c---cccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCC
Q 008735 249 R---QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 325 (555)
Q Consensus 249 ~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 325 (555)
. ...+...+........+. .+... .++++||||+++++++.+++.|.+ .+.+..+||++
T Consensus 247 ~~~~~~~i~~~~~~~~k~~~L~-------~ll~~-~~~~~LVF~~t~~~a~~l~~~L~~----------~~~v~~lhg~~ 308 (1054)
T 1gku_B 247 SRITVRNVEDVAVNDESISTLS-------SILEK-LGTGGIIYARTGEEAEEIYESLKN----------KFRIGIVTATK 308 (1054)
T ss_dssp CEECCCCEEEEEESCCCTTTTH-------HHHTT-SCSCEEEEESSHHHHHHHHHTTTT----------SSCEEECTTSS
T ss_pred cccCcCCceEEEechhHHHHHH-------HHHhh-cCCCEEEEEcCHHHHHHHHHHHhh----------ccCeeEEeccH
Confidence 1 122333444322222222 22222 257899999999999999988754 26799999998
Q ss_pred CHHHHHhhcCcCCCCCcEEEEe----cCccccccccCCe-EEEEeCCcc
Q 008735 326 PSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPGI-KYVIDPGFV 369 (555)
Q Consensus 326 ~~~~r~~i~~~f~~g~~~vlva----T~~~e~Gvdip~v-~~VId~g~~ 369 (555)
.++++.|++|+.+|||| |+++++|||+|+| ++||+.|..
T Consensus 309 -----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 309 -----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp -----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred -----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 36778899999999999 9999999999995 999997766
No 48
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=2.7e-30 Score=276.43 Aligned_cols=297 Identities=14% Similarity=0.104 Sum_probs=188.2
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEE
Q 008735 40 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 119 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~v 119 (555)
...++++|.++++.+.+++++++++|||||||.++..++..... .++.+++++.|++.++.|..+.+.+.... .+..+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~-~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~-~~~~v 188 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQMADDFVDYRLF-SHAMI 188 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHH-HCSSEEEEEESSHHHHHHHHHHHHHTTSS-CGGGE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHh-CCCCeEEEEECcHHHHHHHHHHHHHhhcC-Cccce
Confidence 45889999999999999999999999999999766555544321 23448999999999999999988655221 11122
Q ss_pred EEEEecCCCCC---chhhH-----HHhhcC--CCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccccCCCCCCCC
Q 008735 120 GYSIRFDDRTS---TSTRI-----KEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNN 189 (555)
Q Consensus 120 g~~~~~~~~~~---~~~~i-----~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~ 189 (555)
+.......... ....+ ..+..+ ..+.++++||+||+|+.... .+..+
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~------~~~~i----------------- 245 (510)
T 2oca_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGK------SISSI----------------- 245 (510)
T ss_dssp EECGGGCCTTGGGCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHH------HHHHH-----------------
T ss_pred EEEecCCccccccccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCcc------cHHHH-----------------
Confidence 21111111100 00000 122222 34678999999999964431 11111
Q ss_pred CCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH--H---HHhhhCCCCeEEeCC-------ccccceEE-
Q 008735 190 NENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--G---FSEYFGCAKAVHVQG-------RQFPVEIL- 256 (555)
Q Consensus 190 ~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--~---~~~~~~~~~~~~~~~-------~~~~v~~~- 256 (555)
++.+. ...++++||||++.. . +..+++. ..+.+.. ...+....
T Consensus 246 -------------------l~~~~----~~~~~l~lSATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ 301 (510)
T 2oca_A 246 -------------------ISGLN----NCMFKFGLSGSLRDGKANIMQYVGMFGE-IFKPVTTSKLMEDGQVTELKINS 301 (510)
T ss_dssp -------------------GGGCT----TCCEEEEEESCGGGCSSCHHHHHHHHCS-EECCCCCC---------CCEEEE
T ss_pred -------------------HHhcc----cCcEEEEEEeCCCCCcccHHHhHHhhCC-eEEeeCHHHHhhCCcCCCceEEE
Confidence 11111 556899999999322 1 2234432 1111111 01111111
Q ss_pred -EcCCCC--------CChHH------------HHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCC
Q 008735 257 -YTLYPE--------PDYLD------------ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK 315 (555)
Q Consensus 257 -~~~~~~--------~~~~~------------~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~ 315 (555)
....+. ..+.. ..+...+.......+..++||++ .++++.+++.|.+. +
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~---------~ 371 (510)
T 2oca_A 302 IFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNE---------Y 371 (510)
T ss_dssp EEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTT---------C
T ss_pred EeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHc---------C
Confidence 000000 11111 11111122122223445677776 88898888888764 3
Q ss_pred eEEEEecCCCCHHHHHhhcCcCCCCCcEEEEec-CccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHH
Q 008735 316 LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT-NIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQAL 394 (555)
Q Consensus 316 ~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT-~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~ 394 (555)
..+..+||+++.++|.++++.|++|+.+||||| +++++|+|+|++++||. || .|.+..+|.
T Consensus 372 ~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~--------~~----------~~~s~~~~~ 433 (510)
T 2oca_A 372 DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL--------AH----------GVKSKIIVL 433 (510)
T ss_dssp SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE--------SS----------CCCSCCHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE--------eC----------CCCCHHHHH
Confidence 478899999999999999999999999999999 99999999999999998 66 467778999
Q ss_pred HHhcccCCCCCCE-EEEccC
Q 008735 395 QRSGRAGREGPGK-CFRLYP 413 (555)
Q Consensus 395 Qr~GRaGR~~~G~-~~~l~~ 413 (555)
||+||+||.|+|. ++.+|+
T Consensus 434 Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 434 QTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHTTTCCCCCCEEEE
T ss_pred HHHhcccccCCCCceEEEEE
Confidence 9999999999553 666664
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=1.1e-27 Score=258.83 Aligned_cols=164 Identities=19% Similarity=0.189 Sum_probs=122.1
Q ss_pred eEEEeccCCC--HHHHHhhhCCCCeEEeCCccccceEEE---cCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILY---TLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++.+||+|.. .++|.+.++ ..++.++.......... ......+.....+..+...+. .+.++||||+|++.+
T Consensus 369 kl~GmTGTa~te~~e~~~iY~-l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~--~~~pvLVft~s~~~s 445 (844)
T 1tf5_A 369 KLAGMTGTAKTEEEEFRNIYN-MQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYM--TGQPVLVGTVAVETS 445 (844)
T ss_dssp EEEEEESCCGGGHHHHHHHHC-CCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHH
T ss_pred hhccCCcccchhHHHHHHHhC-CceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHH
Confidence 6789999994 456666665 45666654322111111 001112223333333333222 256799999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccC--------CeEEEEeCC
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP--------GIKYVIDPG 367 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip--------~v~~VId~g 367 (555)
+.++..|.+. ++.+..+||++...+|..+.+.++.| .|+||||+|++|+||+ ++.+||+
T Consensus 446 e~Ls~~L~~~---------gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn-- 512 (844)
T 1tf5_A 446 ELISKLLKNK---------GIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG-- 512 (844)
T ss_dssp HHHHHHHHTT---------TCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE--
T ss_pred HHHHHHHHHC---------CCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEE--
Confidence 9999999886 88899999999999998888888766 5999999999999999 8999999
Q ss_pred cccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhh
Q 008735 368 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 416 (555)
Q Consensus 368 ~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 416 (555)
|| .|.|...|.||+||+||.| +|.++.+++.++
T Consensus 513 ------~d----------~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 513 ------TE----------RHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp ------SS----------CCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred ------ec----------CCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 77 7999999999999999999 999988886543
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=7.8e-28 Score=261.73 Aligned_cols=299 Identities=18% Similarity=0.112 Sum_probs=167.6
Q ss_pred CCcHHHHHHHHHHHhc-----CCeEEEEcCCCCchhhHHHHHHHhccccC-------CCcEEEEeCccHHHHHHHH-HHH
Q 008735 41 LPIASVEKRLVEEVRK-----NDILIIVGETGSGKTTQLPQFLFHAGFCR-------DGKLIGVTQPRRVAAVTVA-KRV 107 (555)
Q Consensus 41 l~~~~~Q~~~i~~i~~-----~~~~ii~apTGsGKT~~l~~~i~~~~~~~-------~~~~i~~~~P~r~l~~~~~-~~~ 107 (555)
..++++|.++++.+.+ ++.+++++|||||||.++..++....... .+.+++++.|++.++.|.. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4689999999998875 47799999999999966544443322221 4568999999999999888 433
Q ss_pred HHHhCCccCCEEEEEEe--cCCCCCchhhHHHh------hcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhccc
Q 008735 108 AEESGVELGQRVGYSIR--FDDRTSTSTRIKEA------LLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKS 179 (555)
Q Consensus 108 ~~~~~~~~~~~vg~~~~--~~~~~~~~~~i~~~------~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~ 179 (555)
.. ++...+...+.... .+..+.+...+... ...-....+++||+||||......
T Consensus 257 ~~-~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~----------------- 318 (590)
T 3h1t_A 257 TP-FGDARHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD----------------- 318 (590)
T ss_dssp TT-TCSSEEECCC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------------------
T ss_pred Hh-cchhhhhhhccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-----------------
Confidence 32 22111110000000 00011112222111 112224568999999999422110
Q ss_pred ccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCC---HHHHHhhhCCCCeEEeC-------Cc
Q 008735 180 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD---ARGFSEYFGCAKAVHVQ-------GR 249 (555)
Q Consensus 180 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~---~~~~~~~~~~~~~~~~~-------~~ 249 (555)
...+..++..+ +..++++||||+. ......+|+.. +.... +.
T Consensus 319 ----------------------~~~~~~il~~~-----~~~~~l~lTATP~~~~~~~~~~~f~~~-~~~~~~~~~i~~~~ 370 (590)
T 3h1t_A 319 ----------------------NSNWREILEYF-----EPAFQIGMTATPLREDNRDTYRYFGNP-IYTYSLRQGIDDGF 370 (590)
T ss_dssp -------------------------CHHHHHHS-----TTSEEEEEESSCSCTTTHHHHHHSCSC-SEEECHHHHHHHTS
T ss_pred ----------------------hHHHHHHHHhC-----CcceEEEeccccccccchhHHHHcCCc-eEecCHHHHhhCCc
Confidence 01112222222 4468999999983 23455677642 22211 00
Q ss_pred cccceEEE--cCC------------------------CCCCh---------HHHHHHHHHHHHh-cCCCCcEEEEcCCHH
Q 008735 250 QFPVEILY--TLY------------------------PEPDY---------LDATLITIFQVHL-DEAPGDILVFLTGQE 293 (555)
Q Consensus 250 ~~~v~~~~--~~~------------------------~~~~~---------~~~~~~~~~~~~~-~~~~~~iLVF~~t~~ 293 (555)
..+..... ... ..... .......+..... ....+++||||++++
T Consensus 371 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~ 450 (590)
T 3h1t_A 371 LAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQE 450 (590)
T ss_dssp SCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHH
T ss_pred cCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHH
Confidence 01111110 000 00000 0111122222222 244688999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcE---EEEecCccccccccCCeEEEEeCCccc
Q 008735 294 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRK---VILATNIAETSVTIPGIKYVIDPGFVK 370 (555)
Q Consensus 294 ~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~---vlvaT~~~e~Gvdip~v~~VId~g~~~ 370 (555)
+++.+++.|.+......... .-.+..+||+++. +|.++++.|++|+.+ |+|||+++++|+|+|++++||.
T Consensus 451 ~a~~l~~~L~~~~~~~~~~~-~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~----- 523 (590)
T 3h1t_A 451 HADEMRRALNNLNSDLSRKH-PDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL----- 523 (590)
T ss_dssp HHHHHHHHHHHHTHHHHTTC-TTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE-----
T ss_pred HHHHHHHHHHHhhhhhhccC-CCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE-----
Confidence 99999999987643211111 2236778998764 799999999998765 8899999999999999999998
Q ss_pred ceeecCCCCccccceeecCHHhHHHHhcccCCCCC
Q 008735 371 ARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP 405 (555)
Q Consensus 371 ~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~ 405 (555)
|+ .|.|...|+||+||+||.++
T Consensus 524 ---~~----------~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 524 ---AR----------VVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp ---ES----------CCCCHHHHHHHHTTSCCCBG
T ss_pred ---Ee----------cCCChHHHHHHHhhhcccCc
Confidence 77 57889999999999999874
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=2.1e-26 Score=248.02 Aligned_cols=163 Identities=20% Similarity=0.183 Sum_probs=123.1
Q ss_pred eEEEeccCC--CHHHHHhhhCCCCeEEeCCccccceEEEcC----CCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHH
Q 008735 221 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTL----YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 294 (555)
Q Consensus 221 ~ii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~ 294 (555)
++.+||+|. ..+.|.+.++ ..++.++... |+...-.. ....+........+...+ ..+.++||||+|+..
T Consensus 378 kl~GmTGTa~te~~ef~~iY~-l~vv~IPtn~-p~~R~d~~d~v~~~~~~K~~al~~~i~~~~--~~gqpvLVft~sie~ 453 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIYK-LDTVVVPTNR-PMIRKDLPDLVYMTEAEKIQAIIEDIKERT--AKGQPVLVGTISIEK 453 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHHC-CEEEECCCSS-CCCCEECCCEEESSHHHHHHHHHHHHHHHH--TTTCCEEEEESSHHH
T ss_pred hhhcCCCCchhHHHHHHHHhC-CcEEEcCCCC-CceeecCCcEEEeCHHHHHHHHHHHHHHHh--cCCCCEEEEECcHHH
Confidence 688999999 4567777775 5577776432 32211111 111222222222222222 336689999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCC---------------
Q 008735 295 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG--------------- 359 (555)
Q Consensus 295 ~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~--------------- 359 (555)
++.+++.|.+. ++.+..+||++...++..+.++|+.| .|+||||+|+||+||+.
T Consensus 454 se~Ls~~L~~~---------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~ 522 (853)
T 2fsf_A 454 SELVSNELTKA---------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPT 522 (853)
T ss_dssp HHHHHHHHHHT---------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCC
T ss_pred HHHHHHHHHHC---------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccch
Confidence 99999999986 88899999999999998899999988 69999999999999997
Q ss_pred -----------------e-----EEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhh
Q 008735 360 -----------------I-----KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 416 (555)
Q Consensus 360 -----------------v-----~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 416 (555)
| .+||+ || .|-|...|.||+||+||.| +|.+..+.+.++
T Consensus 523 ~~~~~~~~~~~~~~~~~V~~~GGl~VI~--------te----------~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 523 AEQIEKIKADWQVRHDAVLEAGGLHIIG--------TE----------RHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTSEEEEE--------SS----------CCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hHHHHHHHHHhhhhhhHHHhcCCcEEEE--------cc----------CCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 4 69999 77 6899999999999999999 999888775443
No 52
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=3.1e-27 Score=222.07 Aligned_cols=169 Identities=21% Similarity=0.335 Sum_probs=142.4
Q ss_pred HHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCcccc
Q 008735 274 FQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAET 353 (555)
Q Consensus 274 ~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~ 353 (555)
.++.....++++||||+++.+++.+++.|.+. ++.+..+||+|++++|..+++.|++|..+|||||+++++
T Consensus 23 ~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 93 (212)
T 3eaq_A 23 SDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAAR 93 (212)
T ss_dssp HHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTC
T ss_pred HHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhc
Confidence 33333445789999999999999999999887 888999999999999999999999999999999999999
Q ss_pred ccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhhH--------------h
Q 008735 354 SVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEF--------------D 418 (555)
Q Consensus 354 Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~--------------~ 418 (555)
|+|+|++++||+ || .|.+..+|+||+|||||.| +|.|+.++++.+. +
T Consensus 94 Gidi~~v~~Vi~--------~~----------~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~ 155 (212)
T 3eaq_A 94 GLDIPQVDLVVH--------YR----------LPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFK 155 (212)
T ss_dssp SSSCCCBSEEEE--------SS----------CCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCE
T ss_pred CCCCccCcEEEE--------CC----------CCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCe
Confidence 999999999999 66 5889999999999999999 9999999988762 2
Q ss_pred cccCCCCCcccccCchHHHHHHhhcCCCCccCC-----cCCCCCcHHHHHHHHHHH
Q 008735 419 KLEDSTKPEIKRCNLSNVILQLKALGVDDIIGF-----DFMEKPSRASIIKSLEQL 469 (555)
Q Consensus 419 ~~~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~-----~~~~~p~~~~~~~al~~L 469 (555)
.+.....+++.+..+...++.++.++..+...| +++++|..+.+..|+..|
T Consensus 156 ~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 156 RVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 344455567777888888888888765444444 567888888888888765
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.94 E-value=8.8e-26 Score=243.42 Aligned_cols=340 Identities=17% Similarity=0.113 Sum_probs=206.8
Q ss_pred hhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchh--hHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCc
Q 008735 37 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE 114 (555)
Q Consensus 37 ~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~ 114 (555)
....+.++++|...+..+.+|+ +..++||+||| +.+|.++... .+..+.++.|++.||.+.++.+..... .
T Consensus 106 R~lG~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL----~g~~v~VvTpTreLA~Qdae~m~~l~~-~ 178 (922)
T 1nkt_A 106 RVLDQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL----AGNGVHIVTVNDYLAKRDSEWMGRVHR-F 178 (922)
T ss_dssp HHHSCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT----TTSCEEEEESSHHHHHHHHHHHHHHHH-H
T ss_pred HHcCCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH----hCCCeEEEeCCHHHHHHHHHHHHHHHh-h
Confidence 3355699999999999999998 89999999999 4455543222 245799999999999988877554432 2
Q ss_pred cCCEEEEEEecC------------CCCCchhhH-HHhhc--------CCCCCCCceeEeecccccccch-----------
Q 008735 115 LGQRVGYSIRFD------------DRTSTSTRI-KEALL--------DPYLSRYSAIIVDEAHERTVHT----------- 162 (555)
Q Consensus 115 ~~~~vg~~~~~~------------~~~~~~~~i-~~~~~--------~~~l~~~~~iIiDE~He~~~~~----------- 162 (555)
.|..+|...... ....++.++ ..++. ...++.+.++||||||..-.+.
T Consensus 179 lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp TTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred cCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 334444332211 111122222 11122 2346789999999998522110
Q ss_pred ---hHHHHHHHHHHHhhc-----------cccc---------------CCCCCCCCCCcchh-----------------h
Q 008735 163 ---DVLLGLLKKVQNARS-----------KSAD---------------GHSNGNNNNENSDM-----------------I 196 (555)
Q Consensus 163 ---d~ll~~l~~~~~~~~-----------~~~~---------------~~~~~~~~~~~~d~-----------------~ 196 (555)
.-+...+.+++..-. ++.. ...++......... +
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYi 338 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYI 338 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEE
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccccee
Confidence 122233444443221 0000 00222222110000 0
Q ss_pred --------hccCCCCcc------------------------cchhhhccccC--CCCceEEEeccCCC--HHHHHhhhCC
Q 008735 197 --------LDRGNDTNG------------------------INTLKQCQGRK--FAPLKLIIMSASLD--ARGFSEYFGC 240 (555)
Q Consensus 197 --------l~~~~~~~~------------------------~~~l~~~~~~~--~~~~~ii~~SAT~~--~~~~~~~~~~ 240 (555)
++..-+-.+ ..++..+..+. ..-.++.+||+|.. .++|.+.++
T Consensus 339 V~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~- 417 (922)
T 1nkt_A 339 VRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYK- 417 (922)
T ss_dssp ECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHC-
T ss_pred eecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhC-
Confidence 000000000 00011111000 01137899999994 456777775
Q ss_pred CCeEEeCCccccceEEEc---CCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeE
Q 008735 241 AKAVHVQGRQFPVEILYT---LYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLV 317 (555)
Q Consensus 241 ~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~ 317 (555)
..++.++.........+. .....+.....+..+...+. .+.++||||+|++.++.+++.|.+. ++.
T Consensus 418 l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~--~gqpvLVft~Sie~sE~Ls~~L~~~---------Gi~ 486 (922)
T 1nkt_A 418 LGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA--KGQPVLIGTTSVERSEYLSRQFTKR---------RIP 486 (922)
T ss_dssp CEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHT---------TCC
T ss_pred CCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHC---------CCC
Confidence 557777654322221111 11112223333333333322 3567999999999999999999986 888
Q ss_pred EEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCe-------------------------------------
Q 008735 318 TVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI------------------------------------- 360 (555)
Q Consensus 318 v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v------------------------------------- 360 (555)
+..+||++...++..+.+.++.| .|+||||+|++|+||+.+
T Consensus 487 ~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (922)
T 1nkt_A 487 HNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVK 564 (922)
T ss_dssp CEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHH
T ss_pred EEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Confidence 99999999888888888999888 699999999999999964
Q ss_pred ---------------EEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChh
Q 008735 361 ---------------KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 415 (555)
Q Consensus 361 ---------------~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 415 (555)
.+||+ || .|-|...|.||+||+||.| +|.+..+.+.+
T Consensus 565 ~~~~~~~~~V~~~GGlhVI~--------te----------~pes~riy~qr~GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 565 EEASKEAKEVIEAGGLYVLG--------TE----------RHESRRIDNQLRGRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp HHTTHHHHHHHHTTSEEEEE--------CS----------CCSSHHHHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred HHHHHhhhHHHhcCCcEEEe--------cc----------CCCCHHHHHHHhcccccCCCCeeEEEEechh
Confidence 69999 77 7899999999999999999 99988777543
No 54
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.92 E-value=2e-25 Score=253.68 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=101.5
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCC--cEEEEe
Q 008735 270 LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF--RKVILA 347 (555)
Q Consensus 270 ~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~--~~vlva 347 (555)
...+..+.....++++||||+++..++.+++.|.+.. ++.+..+||+|+..+|.++++.|++|+ .+||||
T Consensus 491 ~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~--------g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLva 562 (968)
T 3dmq_A 491 VEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRERE--------GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLC 562 (968)
T ss_dssp HHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT--------CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEEC
T ss_pred HHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc--------CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEe
Confidence 3344444444568899999999999999999998531 778999999999999999999999998 999999
Q ss_pred cCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CC--EEEEccCh
Q 008735 348 TNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PG--KCFRLYPE 414 (555)
Q Consensus 348 T~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G--~~~~l~~~ 414 (555)
|+++++|+|+|++++||+ || .|.+...|.||+||+||.| .| .+|.++.+
T Consensus 563 T~v~~~GlDl~~~~~VI~--------~d----------~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~ 614 (968)
T 3dmq_A 563 SEIGSEGRNFQFASHMVM--------FD----------LPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLE 614 (968)
T ss_dssp SCCTTCSSCCTTCCEEEC--------SS----------CCSSHHHHHHHHHTTSCSSSCSCCEEEEEEET
T ss_pred cchhhcCCCcccCcEEEE--------ec----------CCCCHHHHHHHhhccccCCCCceEEEEEecCC
Confidence 999999999999999998 88 5789999999999999999 55 34554543
No 55
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=2.8e-26 Score=225.64 Aligned_cols=189 Identities=20% Similarity=0.299 Sum_probs=150.2
Q ss_pred EEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhc
Q 008735 255 ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVF 334 (555)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~ 334 (555)
..+...+..+..+... ++.....++++||||+++++++.+++.|.+. ++.+..+||+|++++|..++
T Consensus 5 ~~~i~~~~~~K~~~L~----~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~l~~~~r~~~~ 71 (300)
T 3i32_A 5 EEAVPAPVRGRLEVLS----DLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDMSQGERERVM 71 (300)
T ss_dssp EEEEECCSSSHHHHHH----HHHHHHCCSSEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSCCCTHHHHHHH
T ss_pred EEEEECCHHHHHHHHH----HHHHhcCCCCEEEEECCHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHH
Confidence 3444444444444333 3333334789999999999999999999875 88899999999999999999
Q ss_pred CcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccC
Q 008735 335 APAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 413 (555)
Q Consensus 335 ~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 413 (555)
+.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| +|.|+.+++
T Consensus 72 ~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~--------~d----------~p~s~~~y~Qr~GRagR~g~~G~~i~l~~ 133 (300)
T 3i32_A 72 GAFRQGEVRVLVATDVAARGLDIPQVDLVVH--------YR----------MPDRAEAYQHRSGRTGRAGRGGRVVLLYG 133 (300)
T ss_dssp HHHHHTSCCEEEECSTTTCSTTCCCCSEEEE--------SS----------CCSSTTHHHHHHTCCC-----CEEEEEEC
T ss_pred HHhhcCCceEEEEechhhcCccccceeEEEE--------cC----------CCCCHHHHHHHccCcCcCCCCceEEEEeC
Confidence 9999999999999999999999999999999 66 5788999999999999998 999999998
Q ss_pred hhh--------------HhcccCCCCCcccccCchHHHHHHhhcCCCCccCC-----cCCCCCcHHHHHHHHHHHHHcCC
Q 008735 414 ENE--------------FDKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGF-----DFMEKPSRASIIKSLEQLFLLGA 474 (555)
Q Consensus 414 ~~~--------------~~~~~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~-----~~~~~p~~~~~~~al~~L~~~g~ 474 (555)
+.+ ++.+.....+++.+..+..+++.++.++..+...| +|+++|+.+.+..|+..|.....
T Consensus 134 ~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 134 PRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp SSTHHHHHHHHHHHTCCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCcceEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 776 33345556678888889999999887665444444 56777899999999999965544
No 56
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.90 E-value=3.9e-22 Score=217.74 Aligned_cols=167 Identities=16% Similarity=0.159 Sum_probs=123.8
Q ss_pred CceEEEeccCCCHHHHHhhhCCCCeEEeCCcc----ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHH
Q 008735 219 PLKLIIMSASLDARGFSEYFGCAKAVHVQGRQ----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 294 (555)
Q Consensus 219 ~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~ 294 (555)
..+++++|||++...+.. ...++....+. .|. ... .+........+..+..... .+.++||||+|+..
T Consensus 380 ~~q~i~~SAT~~~~~~~~---~~~~~~~~~r~~~l~~p~-i~v--~~~~~~~~~Ll~~l~~~~~--~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH---SGRVVEQIIRPTGLLDPL-VRV--KPTENQILDLMEGIRERAA--RGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH---CSEEEEECSCTTCCCCCE-EEE--ECSTTHHHHHHHHHHHHHH--TTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh---hhCeeeeeeccCCCCCCe-EEE--ecccchHHHHHHHHHHHHh--cCCEEEEEECCHHH
Confidence 468999999997654432 11122222111 111 111 1122334444444433322 36789999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceee
Q 008735 295 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLY 374 (555)
Q Consensus 295 ~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~y 374 (555)
++.+++.|.+. ++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+ |
T Consensus 452 ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~--------~ 514 (664)
T 1c4o_A 452 AEELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI--------L 514 (664)
T ss_dssp HHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE--------T
T ss_pred HHHHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEE--------e
Confidence 99999999886 788899999999999999999999999999999999999999999999999 5
Q ss_pred cCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChh
Q 008735 375 DPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPEN 415 (555)
Q Consensus 375 d~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~ 415 (555)
|... ...|.|..+|+||+|||||.++|.|+.++++.
T Consensus 515 d~d~-----~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 515 DADK-----EGFLRSERSLIQTIGRAARNARGEVWLYADRV 550 (664)
T ss_dssp TTTS-----CSGGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred CCcc-----cCCCCCHHHHHHHHCccCcCCCCEEEEEEcCC
Confidence 5211 11378999999999999999999999999654
No 57
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.90 E-value=4.8e-23 Score=196.96 Aligned_cols=172 Identities=42% Similarity=0.626 Sum_probs=141.5
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCC---CcEEEEeCccHHHHHHHHHHHHH
Q 008735 33 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD---GKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 33 ~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~---~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
++...+..+|++++|+++++.+.+|++++++||||||||+++..+++......+ +..++++.|++.++.++.+++..
T Consensus 52 ~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 52 AILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp HHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 345567789999999999999999999999999999999988888776543222 34789999999999999999999
Q ss_pred HhCCccCCEEEEEEecCCCCC---------chhhHHHhhcCCCCCCCceeEeecccccccchhHHHHHHHHHHHhhcccc
Q 008735 110 ESGVELGQRVGYSIRFDDRTS---------TSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 180 (555)
Q Consensus 110 ~~~~~~~~~vg~~~~~~~~~~---------~~~~i~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~~~~~~~~ 180 (555)
.++..++..+||..+...... +..++...+.. .++++++||+||+|+++.+.+..+..++.+...+
T Consensus 132 ~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~---- 206 (235)
T 3llm_A 132 ERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY---- 206 (235)
T ss_dssp TTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC----
T ss_pred HhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC----
Confidence 888888899998876544332 23333333332 4899999999999999999999988999888776
Q ss_pred cCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHHHHHhhhCCCCeEEe
Q 008735 181 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHV 246 (555)
Q Consensus 181 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~ 246 (555)
++.|+++||||++.+.+++||++++++.+
T Consensus 207 -------------------------------------~~~~~il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 207 -------------------------------------PEVRIVLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp -------------------------------------TTSEEEEEECSSCCHHHHHHTTSCCCEEC
T ss_pred -------------------------------------CCCeEEEEecCCCHHHHHHHcCCCCEEeC
Confidence 78899999999988889999999888753
No 58
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.90 E-value=2.6e-22 Score=211.95 Aligned_cols=164 Identities=20% Similarity=0.226 Sum_probs=121.1
Q ss_pred eEEEeccCCC--HHHHHhhhCCCCeEEeCCccccceEEEc---CCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 008735 221 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYT---LYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 295 (555)
Q Consensus 221 ~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~ 295 (555)
++.+||+|.. .++|.+.++ ..++.++...-....... .....+.....+..+...+. .+.++||||+|++.+
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~-l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~--~gqpVLVFt~S~e~s 487 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYG-MEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYK--KGQPVLVGTTSIEKS 487 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSC-CCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH--HTCCEEEEESSHHHH
T ss_pred HHeEECCCCchHHHHHHHHhC-CeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhh--CCCCEEEEECCHHHH
Confidence 6899999993 456766664 567777653321222111 01112233333333333322 256899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccC--------CeEEEEeCC
Q 008735 296 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP--------GIKYVIDPG 367 (555)
Q Consensus 296 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip--------~v~~VId~g 367 (555)
+.+++.|.+. ++.+..+||+....++..+...++.| .|+||||+|++|+||+ +..+||+
T Consensus 488 E~Ls~~L~~~---------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn-- 554 (822)
T 3jux_A 488 ELLSSMLKKK---------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG-- 554 (822)
T ss_dssp HHHHHHHHTT---------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE--
T ss_pred HHHHHHHHHC---------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe--
Confidence 9999999876 88899999997777776666777666 5999999999999998 6679999
Q ss_pred cccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhh
Q 008735 368 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 416 (555)
Q Consensus 368 ~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 416 (555)
|| .|.|...|.||+|||||.| +|.++.+++.++
T Consensus 555 ------te----------~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 555 ------TE----------RHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp ------SS----------CCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred ------cC----------CCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 77 6999999999999999999 999988886544
No 59
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.89 E-value=1.8e-23 Score=222.86 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=91.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCC-CcE-EEEecCccccccccC
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRK-VILATNIAETSVTIP 358 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~-vlvaT~~~e~Gvdip 358 (555)
.+.++|||++++..++.+++.|.+.. +..+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|+|
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~ 411 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 411 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCT
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchh
Confidence 46789999999999999999998742 56678899999999999999999988 454 799999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEccChhhH
Q 008735 359 GIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEF 417 (555)
Q Consensus 359 ~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~ 417 (555)
++++||. || .|.+...+.||+||++|.| +..+|+++.+...
T Consensus 412 ~~~~vi~--------~d----------~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ti 455 (500)
T 1z63_A 412 SANRVIH--------FD----------RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 455 (500)
T ss_dssp TCSEEEE--------SS----------CCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSH
T ss_pred hCCEEEE--------eC----------CCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCH
Confidence 9999998 77 5778889999999999999 3456777765433
No 60
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.88 E-value=4.2e-22 Score=224.81 Aligned_cols=306 Identities=11% Similarity=0.015 Sum_probs=182.5
Q ss_pred CCcHHHHHHHHHHHhc--------------CCeEEEEcCCCCchhhHHHHHHHhccc-cCCCcEEEEeCccHHHHHHHHH
Q 008735 41 LPIASVEKRLVEEVRK--------------NDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAK 105 (555)
Q Consensus 41 l~~~~~Q~~~i~~i~~--------------~~~~ii~apTGsGKT~~l~~~i~~~~~-~~~~~~i~~~~P~r~l~~~~~~ 105 (555)
..++++|.++++.+.. +++.++.++||||||..+ .++..... .....+++++.|++.|+.|..+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 4589999999998765 368999999999999554 22222211 1223589999999999999988
Q ss_pred HHHHHhCCccCCEEEE--------EEecCCCCCchhhHHHhhc----CCCCCCCceeEeecccccccchhHHHHHHHHHH
Q 008735 106 RVAEESGVELGQRVGY--------SIRFDDRTSTSTRIKEALL----DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 173 (555)
Q Consensus 106 ~~~~~~~~~~~~~vg~--------~~~~~~~~~~~~~i~~~~~----~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~~~ 173 (555)
.+..+....+...... .......+++..++...+. .+.+....+||+||||+... .. ..+.+.
T Consensus 349 ~f~~f~~~~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~-~~----~~~~I~ 423 (1038)
T 2w00_A 349 EYQRFSPDSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF-GE----AQKNLK 423 (1038)
T ss_dssp HHHTTSTTCSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH-HH----HHHHHH
T ss_pred HHHHhcccccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc-hH----HHHHHH
Confidence 7766443211100000 0000111122223322221 12356789999999996321 11 122222
Q ss_pred HhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCH-------HHHHhhhCCCCeEEe
Q 008735 174 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA-------RGFSEYFGCAKAVHV 246 (555)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~-------~~~~~~~~~~~~~~~ 246 (555)
... ++.++++||||+.. .....+||.. +...
T Consensus 424 ~~~-----------------------------------------p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-i~~Y 461 (1038)
T 2w00_A 424 KKF-----------------------------------------KRYYQFGFTGTPIFPENALGSETTASVFGRE-LHSY 461 (1038)
T ss_dssp HHC-----------------------------------------SSEEEEEEESSCCCSTTCTTSCCHHHHHCSE-EEEE
T ss_pred HhC-----------------------------------------CcccEEEEeCCccccccchhhhHHHHHhCCe-eEee
Confidence 221 56799999999932 2345667642 2111
Q ss_pred C-------CccccceEEEcCCC-------------------------CCChHHHHHHHHHHHHhc--------CCCCcEE
Q 008735 247 Q-------GRQFPVEILYTLYP-------------------------EPDYLDATLITIFQVHLD--------EAPGDIL 286 (555)
Q Consensus 247 ~-------~~~~~v~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~--------~~~~~iL 286 (555)
. |...|+...|.... .+.........++..... ..++++|
T Consensus 462 ~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kam 541 (1038)
T 2w00_A 462 VITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAM 541 (1038)
T ss_dssp CHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEE
T ss_pred cHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 1 22223333232110 001112222223222211 1245799
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcC---CCCCCCeEE-EEecCC----------C----------CH---------------
Q 008735 287 VFLTGQEEIESVERLVQERLLQL---PEASRKLVT-VPIFSS----------L----------PS--------------- 327 (555)
Q Consensus 287 VF~~t~~~~~~l~~~L~~~~~~~---~~~~~~~~v-~~lh~~----------l----------~~--------------- 327 (555)
|||+++..|..+++.|.+..... .....++.+ ..+|++ + ++
T Consensus 542 Vf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~ 621 (1038)
T 2w00_A 542 LAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNS 621 (1038)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 99999999999999998764211 011112333 344542 2 22
Q ss_pred --------------HHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhH
Q 008735 328 --------------EQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQA 393 (555)
Q Consensus 328 --------------~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~ 393 (555)
.+|..+.+.|++|+++|||+|+++.+|+|+|.+.+++ +| .|.+...|
T Consensus 622 ~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tly---------lD----------kpl~~~~l 682 (1038)
T 2w00_A 622 HFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLF---------VD----------KNLRYHGL 682 (1038)
T ss_dssp HHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEE---------EE----------SCCCHHHH
T ss_pred HhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEEE---------Ec----------cCCCccce
Confidence 1477888999999999999999999999999996554 77 57888999
Q ss_pred HHHhcccCCCCC-----CEEEEccC
Q 008735 394 LQRSGRAGREGP-----GKCFRLYP 413 (555)
Q Consensus 394 ~Qr~GRaGR~~~-----G~~~~l~~ 413 (555)
+||+||+||.++ |.++.+..
T Consensus 683 iQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 683 MQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred eehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999884 55665553
No 61
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.4e-22 Score=181.96 Aligned_cols=129 Identities=17% Similarity=0.256 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEec
Q 008735 269 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT 348 (555)
Q Consensus 269 ~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT 348 (555)
....+..+.....++++||||++++.++.++..|.+. ++.+..+||+|++.+|..+++.|++|..+|||||
T Consensus 21 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT 91 (175)
T 2rb4_A 21 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD---------GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT 91 (175)
T ss_dssp HHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 3444555555556789999999999999999999875 7889999999999999999999999999999999
Q ss_pred CccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhhHh
Q 008735 349 NIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFD 418 (555)
Q Consensus 349 ~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 418 (555)
+++++|+|+|++++||+ ||....-. ...+..+|+||+|||||.| +|.|+.+++..+..
T Consensus 92 ~~~~~Gid~~~~~~Vi~--------~d~p~~~~----~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 92 NVCARGIDVKQVTIVVN--------FDLPVKQG----EEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELP 150 (175)
T ss_dssp CSCCTTTCCTTEEEEEE--------SSCCC--C----CSCCHHHHHHHHCBC----CCEEEEEEECGGGHH
T ss_pred cchhcCCCcccCCEEEE--------eCCCCCcc----ccCCHHHHHHHhcccccCCCCceEEEEEccchHH
Confidence 99999999999999999 77211000 1188999999999999998 89999999877643
No 62
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.87 E-value=4e-22 Score=179.21 Aligned_cols=135 Identities=23% Similarity=0.388 Sum_probs=113.4
Q ss_pred ceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHh
Q 008735 253 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 332 (555)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 332 (555)
++..+......+...... .+.....++++||||++++.++.+++.|.+. ++.+..+||+|+..+|..
T Consensus 10 i~~~~~~~~~~~K~~~L~----~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 10 IEHAVIQVREENKFSLLK----DVLMTENPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp EEEEEEECCGGGHHHHHH----HHHHHHCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred ceEEEEECChHHHHHHHH----HHHHhcCCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHH
Confidence 444454444444433322 3333335678999999999999999999885 788999999999999999
Q ss_pred hcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEc
Q 008735 333 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 411 (555)
Q Consensus 333 i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l 411 (555)
+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.| +|.|+.+
T Consensus 77 ~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~~R~g~~g~~~~~ 138 (163)
T 2hjv_A 77 VMNEFKRGEYRYLVATDVAARGIDIENISLVIN--------YD----------LPLEKESYVHRTGRTGRAGNKGKAISF 138 (163)
T ss_dssp HHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE--------SS----------CCSSHHHHHHHTTTSSCTTCCEEEEEE
T ss_pred HHHHHHcCCCeEEEECChhhcCCchhcCCEEEE--------eC----------CCCCHHHHHHhccccCcCCCCceEEEE
Confidence 999999999999999999999999999999999 77 5889999999999999998 9999999
Q ss_pred cChhhHh
Q 008735 412 YPENEFD 418 (555)
Q Consensus 412 ~~~~~~~ 418 (555)
+++.+..
T Consensus 139 ~~~~~~~ 145 (163)
T 2hjv_A 139 VTAFEKR 145 (163)
T ss_dssp ECGGGHH
T ss_pred ecHHHHH
Confidence 9876554
No 63
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.87 E-value=1.1e-20 Score=206.33 Aligned_cols=111 Identities=13% Similarity=0.245 Sum_probs=98.4
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCc---EEEEecCccccccc
Q 008735 280 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR---KVILATNIAETSVT 356 (555)
Q Consensus 280 ~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~---~vlvaT~~~e~Gvd 356 (555)
..+.++|||++.+..++.++..|... ++.+..+||+++.++|.++++.|++|.. .+|++|.+++.|+|
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gln 484 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNR---------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 484 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH---------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHC---------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcc
Confidence 34678999999999999999999876 7889999999999999999999998865 48999999999999
Q ss_pred cCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEccChhhH
Q 008735 357 IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEF 417 (555)
Q Consensus 357 ip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~ 417 (555)
++++++||. || .|.+.+.+.|++||++|.| +..+|++++....
T Consensus 485 l~~a~~Vi~--------~d----------~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ti 530 (644)
T 1z3i_X 485 LIGANRLVM--------FD----------PDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTI 530 (644)
T ss_dssp CTTEEEEEE--------CS----------CCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSH
T ss_pred cccCCEEEE--------EC----------CCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCH
Confidence 999999999 88 5889999999999999999 3467888765533
No 64
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.86 E-value=5.2e-22 Score=178.89 Aligned_cols=117 Identities=19% Similarity=0.446 Sum_probs=101.9
Q ss_pred HHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccc
Q 008735 275 QVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETS 354 (555)
Q Consensus 275 ~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~G 354 (555)
.+.....++++||||++++.++.++..|.+. ++.+..+||+|+..+|..+++.|++|..+|||||+++++|
T Consensus 23 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 93 (165)
T 1fuk_A 23 DLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 93 (165)
T ss_dssp HHHHHTTCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTT
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcC
Confidence 3333345788999999999999999999875 7889999999999999999999999999999999999999
Q ss_pred cccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhhHh
Q 008735 355 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFD 418 (555)
Q Consensus 355 vdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 418 (555)
+|+|++++||+ || .|.+..+|.||+|||||.| +|.|+.++++++..
T Consensus 94 ~d~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 94 IDVQQVSLVIN--------YD----------LPANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 140 (165)
T ss_dssp CCCCSCSEEEE--------SS----------CCSSGGGGGGSSCSCC-----CEEEEEEETTTHH
T ss_pred CCcccCCEEEE--------eC----------CCCCHHHHHHHhcccccCCCCceEEEEEcchHHH
Confidence 99999999999 77 5888999999999999998 89999999776543
No 65
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.86 E-value=9.2e-22 Score=178.34 Aligned_cols=132 Identities=18% Similarity=0.368 Sum_probs=112.3
Q ss_pred ceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHh
Q 008735 253 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 332 (555)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 332 (555)
+..+|......+... .+..+......+++||||++++.++.+++.|... ++.+..+||+|++.+|..
T Consensus 6 i~q~~~~~~~~~K~~----~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~ 72 (172)
T 1t5i_A 6 LQQYYVKLKDNEKNR----KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLS 72 (172)
T ss_dssp CEEEEEECCGGGHHH----HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred eEEEEEECChHHHHH----HHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHHHH
Confidence 444555444443333 3333444445788999999999999999999886 788999999999999999
Q ss_pred hcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEc
Q 008735 333 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 411 (555)
Q Consensus 333 i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l 411 (555)
+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| .|.++.+
T Consensus 73 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~--------~d----------~p~~~~~~~qr~GR~~R~g~~g~~~~~ 134 (172)
T 1t5i_A 73 RYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YD----------MPEDSDTYLHRVARAGRFGTKGLAITF 134 (172)
T ss_dssp HHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE--------SS----------CCSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred HHHHHHCCCCcEEEECCchhcCcchhhCCEEEE--------EC----------CCCCHHHHHHHhcccccCCCCcEEEEE
Confidence 999999999999999999999999999999999 77 6889999999999999999 8999999
Q ss_pred cChh
Q 008735 412 YPEN 415 (555)
Q Consensus 412 ~~~~ 415 (555)
++..
T Consensus 135 ~~~~ 138 (172)
T 1t5i_A 135 VSDE 138 (172)
T ss_dssp ECSH
T ss_pred EcCh
Confidence 9754
No 66
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=178.90 Aligned_cols=136 Identities=20% Similarity=0.308 Sum_probs=99.1
Q ss_pred ceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHh
Q 008735 253 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 332 (555)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 332 (555)
+...+......+........+.. ...++++||||++++.++.+++.|... ++.+..+||+|+..+|..
T Consensus 20 i~q~~~~v~~~~K~~~L~~ll~~---~~~~~k~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~r~~ 87 (185)
T 2jgn_A 20 ITQKVVWVEESDKRSFLLDLLNA---TGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDREE 87 (185)
T ss_dssp EEEEEEECCGGGHHHHHHHHHHH---C-CCSCEEEEESCHHHHHHHHHHHHHT---------TCCEEEEC--------CH
T ss_pred ceEEEEEeCcHHHHHHHHHHHHh---cCCCCeEEEEECCHHHHHHHHHHHHHc---------CCceEEEeCCCCHHHHHH
Confidence 44444444444444433332222 124678999999999999999999875 788999999999999999
Q ss_pred hcCcCCCCCcEEEEecCccccccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEc
Q 008735 333 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 411 (555)
Q Consensus 333 i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l 411 (555)
+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| .|.|+.+
T Consensus 88 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~--------~d----------~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 149 (185)
T 2jgn_A 88 ALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FD----------LPSDIEEYVHRIGRTGRVGNLGLATSF 149 (185)
T ss_dssp HHHHHHHTSSSEEEEEC------CCCSBSEEEE--------SS----------CCSSHHHHHHHHTTBCCTTSCEEEEEE
T ss_pred HHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHccccCCCCCCcEEEEE
Confidence 999999999999999999999999999999999 77 6889999999999999999 9999999
Q ss_pred cChhhHh
Q 008735 412 YPENEFD 418 (555)
Q Consensus 412 ~~~~~~~ 418 (555)
+++.+..
T Consensus 150 ~~~~~~~ 156 (185)
T 2jgn_A 150 FNERNIN 156 (185)
T ss_dssp ECGGGGG
T ss_pred EchhhHH
Confidence 9877653
No 67
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=178.77 Aligned_cols=115 Identities=21% Similarity=0.442 Sum_probs=102.5
Q ss_pred HHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccc
Q 008735 273 IFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAE 352 (555)
Q Consensus 273 ~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e 352 (555)
+.++... .++++||||+++..++.+++.|... ++.+..+||+|++++|.++++.|++|+.+|||||++++
T Consensus 46 L~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~ 115 (191)
T 2p6n_A 46 LLECLQK-TPPPVLIFAEKKADVDAIHEYLLLK---------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS 115 (191)
T ss_dssp HHHHHTT-SCSCEEEECSCHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHH
T ss_pred HHHHHHh-CCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchh
Confidence 3444333 3568999999999999999999886 78899999999999999999999999999999999999
Q ss_pred cccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChh
Q 008735 353 TSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 415 (555)
Q Consensus 353 ~Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 415 (555)
+|+|+|++++||+ || .|.+..+|+||+||+||.| +|.|+.++++.
T Consensus 116 ~Gldi~~v~~VI~--------~d----------~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 116 KGLDFPAIQHVIN--------YD----------MPEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp TTCCCCCCSEEEE--------SS----------CCSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred cCCCcccCCEEEE--------eC----------CCCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 9999999999999 77 6889999999999999999 99999999764
No 68
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.83 E-value=1e-19 Score=198.57 Aligned_cols=168 Identities=18% Similarity=0.179 Sum_probs=123.9
Q ss_pred CCceEEEeccCCCHHHHHhhhCCCCeEEeCCcc----ccceEEEcCCCCCChHHHHHHHHHHHHhcCCCCcEEEEcCCHH
Q 008735 218 APLKLIIMSASLDARGFSEYFGCAKAVHVQGRQ----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQE 293 (555)
Q Consensus 218 ~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~t~~ 293 (555)
...+++++|||++...+.. ....+....+. .|. ... .+........+..+.... ..++++||||+|+.
T Consensus 385 ~~~q~i~~SAT~~~~~~~~---~~~~~~~~~r~~~l~~p~-i~v--~~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH---TDEMVEQIIRPTGLLDPL-IDV--RPIEGQIDDLIGEIQARI--ERNERVLVTTLTKK 456 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH---CSSCEEECCCTTCCCCCE-EEE--ECSTTHHHHHHHHHHHHH--TTTCEEEEECSSHH
T ss_pred cCCCEEEEecCCChhHHHh---hhCeeeeeecccCCCCCe-EEE--ecccchHHHHHHHHHHHH--hcCCeEEEEECCHH
Confidence 3568899999997654332 01122221111 111 111 122233344444433332 23678999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCCccccee
Q 008735 294 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARL 373 (555)
Q Consensus 294 ~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g~~~~~~ 373 (555)
.++.+++.|.+. ++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 457 ~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~-------- 519 (661)
T 2d7d_A 457 MSEDLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI-------- 519 (661)
T ss_dssp HHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEE--------
T ss_pred HHHHHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEE--------
Confidence 999999999886 788899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCccccceeecCHHhHHHHhcccCCCCCCEEEEccChh
Q 008735 374 YDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPEN 415 (555)
Q Consensus 374 yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~~G~~~~l~~~~ 415 (555)
||.... ..|.+..+|+||+|||||.++|.|+.++++.
T Consensus 520 ~d~d~~-----G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 520 LDADKE-----GFLRSERSLIQTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp TTTTCC-----TTTTSHHHHHHHHHTTTTSTTCEEEEECSSC
T ss_pred eCcccc-----cCCCCHHHHHHHhCcccCCCCCEEEEEEeCC
Confidence 552110 1378999999999999999999999999764
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.3e-20 Score=207.67 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=98.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCc---EEEEecCcccccccc
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR---KVILATNIAETSVTI 357 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~---~vlvaT~~~e~Gvdi 357 (555)
.+.++|||+..+..+..+.+.|... ++.+..+||+++.++|.++++.|+++.. .+|+||.+++.|||+
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL 641 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINL 641 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCc
Confidence 4678999999999999999999876 8889999999999999999999998654 599999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEccChhhHh
Q 008735 358 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEFD 418 (555)
Q Consensus 358 p~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~ 418 (555)
+++++||. || .|-+...+.||+||++|.| +..+|+|+++...+
T Consensus 642 ~~a~~VI~--------~D----------~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiE 687 (800)
T 3mwy_W 642 MTADTVVI--------FD----------SDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVE 687 (800)
T ss_dssp TTCCEEEE--------SS----------CCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHH
T ss_pred cccceEEE--------ec----------CCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHH
Confidence 99999998 88 5778899999999999998 56788888766443
No 70
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.72 E-value=4.8e-22 Score=180.02 Aligned_cols=119 Identities=19% Similarity=0.350 Sum_probs=106.5
Q ss_pred HHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCcccc
Q 008735 274 FQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAET 353 (555)
Q Consensus 274 ~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~ 353 (555)
..+.....++++||||+++..++.+++.|.+. ++.+..+||+|+..+|..+++.|++|+.+|||||+++++
T Consensus 22 ~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 92 (170)
T 2yjt_D 22 VHLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAAR 92 (170)
Confidence 33333445678999999999999999999875 788999999999999999999999999999999999999
Q ss_pred ccccCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-CCEEEEccChhhHhc
Q 008735 354 SVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFDK 419 (555)
Q Consensus 354 Gvdip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~~ 419 (555)
|+|+|++++||+ || .|.+..+|+||+||+||.| .|.|+.+++..+...
T Consensus 93 Gid~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 93 GIDIPDVSHVFN--------FD----------MPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 141 (170)
Confidence 999999999999 77 6889999999999999998 999999998765543
No 71
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=161.97 Aligned_cols=169 Identities=19% Similarity=0.138 Sum_probs=111.2
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccc-------cCCCcEEEEeCccHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-------CRDGKLIGVTQPRRVAA 100 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~-------~~~~~~i~~~~P~r~l~ 100 (555)
++.+.+.+.+.++..++++|+++++.+.+|+++++++|||||||..+...++.... ...+.+++++.|+++++
T Consensus 28 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 107 (228)
T 3iuy_A 28 YPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELA 107 (228)
T ss_dssp CHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHH
Confidence 45677788888999999999999999999999999999999999544333332211 12456799999999999
Q ss_pred HHHHHHHHHHhCCccCCEEEEEEec--------------CCCCCchhhHHHhhcC--CCCCCCceeEeecccccccchhH
Q 008735 101 VTVAKRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDV 164 (555)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ 164 (555)
.|+.+.+....... ..+...... +..+.+..++..++.. ..+++++++|+||||
T Consensus 108 ~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-------- 177 (228)
T 3iuy_A 108 LHVEAECSKYSYKG--LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD-------- 177 (228)
T ss_dssp HHHHHHHHHHCCTT--CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH--------
T ss_pred HHHHHHHHHhcccC--ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHH--------
Confidence 99999988764321 222211111 1112223333333332 237889999999998
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH--HHH-hhhCC
Q 008735 165 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGC 240 (555)
Q Consensus 165 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--~~~-~~~~~ 240 (555)
.+++.++...+..++..+. ++.|+++||||++.+ .+. .++.+
T Consensus 178 ------------------------------~~~~~~~~~~~~~i~~~~~----~~~~~l~~SAT~~~~~~~~~~~~l~~ 222 (228)
T 3iuy_A 178 ------------------------------KMLDMEFEPQIRKILLDVR----PDRQTVMTSATWPDTVRQLALSYLKD 222 (228)
T ss_dssp ------------------------------HHHHTTCHHHHHHHHHHSC----SSCEEEEEESCCCHHHHHHHHTTCSS
T ss_pred ------------------------------HHhccchHHHHHHHHHhCC----cCCeEEEEEeeCCHHHHHHHHHHCCC
Confidence 3444444444444544443 678999999999653 343 45544
No 72
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.76 E-value=4.5e-18 Score=161.84 Aligned_cols=178 Identities=17% Similarity=0.104 Sum_probs=116.5
Q ss_pred CCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc-CCCcEEEEeCccHHH
Q 008735 22 PFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVA 99 (555)
Q Consensus 22 ~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~-~~~~~i~~~~P~r~l 99 (555)
.|..+. ++.+.+.+...++-.++++|+++++.+.+|+++++++|||||||..+...++..... ..+.+++++.|++++
T Consensus 25 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L 104 (230)
T 2oxc_A 25 DFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREI 104 (230)
T ss_dssp CGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHH
Confidence 344443 567778888888888999999999999999999999999999996655555444322 235689999999999
Q ss_pred HHHHHHHHHHHhCCccCCEEEEEEecC-------------CCCCchhhHHHhhcC--CCCCCCceeEeecccccccchhH
Q 008735 100 AVTVAKRVAEESGVELGQRVGYSIRFD-------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDV 164 (555)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~vg~~~~~~-------------~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ 164 (555)
+.|+.+.+........+..++...... ..+.+..++...+.. ..+.+++++|+||||.
T Consensus 105 ~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~------- 177 (230)
T 2oxc_A 105 AVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK------- 177 (230)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH-------
T ss_pred HHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH-------
Confidence 999999987765432233333222211 111223333333332 2367889999999994
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccC-CCCcccchhhhccccCCCCceEEEeccCCCHH--H-HHhhhCC
Q 008735 165 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRG-NDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--G-FSEYFGC 240 (555)
Q Consensus 165 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--~-~~~~~~~ 240 (555)
+++.+ +...+..++..+. .+.|+++||||++.+ . +.+|+++
T Consensus 178 -------------------------------~~~~~~~~~~~~~i~~~~~----~~~~~l~lSAT~~~~~~~~~~~~~~~ 222 (230)
T 2oxc_A 178 -------------------------------LLEEGSFQEQINWIYSSLP----ASKQMLAVSATYPEFLANALTKYMRD 222 (230)
T ss_dssp -------------------------------HHSTTSSHHHHHHHHHHSC----SSCEEEEEESCCCHHHHHHHTTTCSS
T ss_pred -------------------------------hhcCcchHHHHHHHHHhCC----CCCeEEEEEeccCHHHHHHHHHHcCC
Confidence 33332 3333333333333 567999999999654 2 3356654
Q ss_pred C
Q 008735 241 A 241 (555)
Q Consensus 241 ~ 241 (555)
+
T Consensus 223 p 223 (230)
T 2oxc_A 223 P 223 (230)
T ss_dssp C
T ss_pred C
Confidence 4
No 73
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.76 E-value=6.6e-18 Score=161.99 Aligned_cols=183 Identities=17% Similarity=0.150 Sum_probs=120.0
Q ss_pred CCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccc------cCCCcEEEEe
Q 008735 21 KPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF------CRDGKLIGVT 93 (555)
Q Consensus 21 ~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~------~~~~~~i~~~ 93 (555)
..|..+. ++.+.+.+...++..++++|.++++.+.+|+++++++|||||||..+...++.... ...+.+++++
T Consensus 29 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil 108 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 108 (242)
T ss_dssp SSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEE
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEE
Confidence 3444443 56677888888888999999999999999999999999999999544333332211 1235679999
Q ss_pred CccHHHHHHHHHHHHHHhCCccCCEEEEEEec--------------CCCCCchhhHHHhhc--CCCCCCCceeEeecccc
Q 008735 94 QPRRVAAVTVAKRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHE 157 (555)
Q Consensus 94 ~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~i~~~~~--~~~l~~~~~iIiDE~He 157 (555)
.|+++++.|+.+.+..... ..+..++..... +..+.+..++..++. ...+++++++|+||||
T Consensus 109 ~Pt~~L~~Q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah- 186 (242)
T 3fe2_A 109 APTRELAQQVQQVAAEYCR-ACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD- 186 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH-
T ss_pred eCcHHHHHHHHHHHHHHHh-hcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH-
Confidence 9999999999887765432 112222222111 111222333333332 2347889999999998
Q ss_pred cccchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH--HHH
Q 008735 158 RTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS 235 (555)
Q Consensus 158 ~~~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--~~~ 235 (555)
.+++.++...+..+++.+. ++.|+++||||++.+ .+.
T Consensus 187 -------------------------------------~l~~~~~~~~~~~i~~~~~----~~~q~~~~SAT~~~~~~~~~ 225 (242)
T 3fe2_A 187 -------------------------------------RMLDMGFEPQIRKIVDQIR----PDRQTLMWSATWPKEVRQLA 225 (242)
T ss_dssp -------------------------------------HHHHTTCHHHHHHHHTTSC----SSCEEEEEESCCCHHHHHHH
T ss_pred -------------------------------------HHhhhCcHHHHHHHHHhCC----ccceEEEEEeecCHHHHHHH
Confidence 4555566666666666654 678999999999653 444
Q ss_pred -hhhCCCCeEEe
Q 008735 236 -EYFGCAKAVHV 246 (555)
Q Consensus 236 -~~~~~~~~~~~ 246 (555)
.++.++..+.+
T Consensus 226 ~~~l~~~~~i~~ 237 (242)
T 3fe2_A 226 EDFLKDYIHINI 237 (242)
T ss_dssp HHHCSSCEEEEE
T ss_pred HHHCCCCEEEEe
Confidence 55555444444
No 74
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.75 E-value=8.2e-18 Score=166.35 Aligned_cols=186 Identities=12% Similarity=0.127 Sum_probs=123.0
Q ss_pred CCCCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcC--CeEEEEcCCCCchhhHHHHHHHhcccc-CCCcEEEEeC
Q 008735 19 HSKPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQ 94 (555)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~--~~~ii~apTGsGKT~~l~~~i~~~~~~-~~~~~i~~~~ 94 (555)
....|..+. ++.+.+.+...++..++++|.++++.+..| ++++++||||||||..+.+.++..... ..+.+++++.
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~ 169 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEc
Confidence 344555544 667788888999999999999999999987 999999999999996555455444332 2344799999
Q ss_pred ccHHHHHHHHHHHHHHhCCccCCEEEEEEecCC-----------CCCchhhHHHhhcC---CCCCCCceeEeeccccccc
Q 008735 95 PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDD-----------RTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTV 160 (555)
Q Consensus 95 P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~-----------~~~~~~~i~~~~~~---~~l~~~~~iIiDE~He~~~ 160 (555)
|+++++.|+...+........+..+++...... .+.+..++..++.. ..++++++|||||||.
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~--- 246 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV--- 246 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH---
T ss_pred CcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH---
Confidence 999999999988877654332334443332211 12333444444432 2367899999999983
Q ss_pred chhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhc-cCCCCcccchhhhccccCCCCceEEEeccCCCH--HHHH-h
Q 008735 161 HTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILD-RGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-E 236 (555)
Q Consensus 161 ~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~--~~~~-~ 236 (555)
|++ .++...+..++..+. .+.|+++||||++. ..++ .
T Consensus 247 -----------------------------------l~~~~~~~~~~~~i~~~~~----~~~q~i~~SAT~~~~v~~~a~~ 287 (300)
T 3fmo_B 247 -----------------------------------MIATQGHQDQSIRIQRMLP----RNCQMLLFSATFEDSVWKFAQK 287 (300)
T ss_dssp -----------------------------------HHHSTTHHHHHHHHHTTSC----TTCEEEEEESCCCHHHHHHHHH
T ss_pred -----------------------------------HhhccCcHHHHHHHHHhCC----CCCEEEEEeccCCHHHHHHHHH
Confidence 333 233333333333333 67899999999954 3454 4
Q ss_pred hhCCCCeEEe
Q 008735 237 YFGCAKAVHV 246 (555)
Q Consensus 237 ~~~~~~~~~~ 246 (555)
++.++..+.+
T Consensus 288 ~l~~p~~i~~ 297 (300)
T 3fmo_B 288 VVPDPNVIKL 297 (300)
T ss_dssp HSSSCEEEEE
T ss_pred HCCCCeEEEe
Confidence 5555444443
No 75
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.75 E-value=3.2e-18 Score=161.61 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=116.1
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccC-CCcEEEEeCccHHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~-~~~~i~~~~P~r~l~~~~~~~ 106 (555)
++.+.+.+...++..++++|+++++.+.+|+++++++|||||||..+...++...... .+.+++++.|+++++.|+.+.
T Consensus 12 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 91 (219)
T 1q0u_A 12 QPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHE 91 (219)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHH
Confidence 5678888899999999999999999999999999999999999966555555443322 356799999999999999998
Q ss_pred HHHHhCCcc---CCEEEEEEec--------------CCCCCchhhHHHhhcC--CCCCCCceeEeecccccccchhHHHH
Q 008735 107 VAEESGVEL---GQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLG 167 (555)
Q Consensus 107 ~~~~~~~~~---~~~vg~~~~~--------------~~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~d~ll~ 167 (555)
+.+...... +..++..... +..+.+..++...+.. ..+.+++++|+||||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~---------- 161 (219)
T 1q0u_A 92 TLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL---------- 161 (219)
T ss_dssp HHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH----------
T ss_pred HHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH----------
Confidence 877654211 2222222111 0112233333333332 2467899999999994
Q ss_pred HHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH--H-HHhhhCCCCeE
Q 008735 168 LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--G-FSEYFGCAKAV 244 (555)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--~-~~~~~~~~~~~ 244 (555)
+.+.++...+..++..+. .+.|+++||||++.+ + +.+++.++..+
T Consensus 162 ----------------------------~~~~~~~~~l~~i~~~~~----~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~ 209 (219)
T 1q0u_A 162 ----------------------------MLDMGFITDVDQIAARMP----KDLQMLVFSATIPEKLKPFLKKYMENPTFV 209 (219)
T ss_dssp ----------------------------HHHTTCHHHHHHHHHTSC----TTCEEEEEESCCCGGGHHHHHHHCSSCEEE
T ss_pred ----------------------------HhhhChHHHHHHHHHhCC----cccEEEEEecCCCHHHHHHHHHHcCCCeEE
Confidence 333333333333333332 578999999999543 3 33566554444
Q ss_pred Ee
Q 008735 245 HV 246 (555)
Q Consensus 245 ~~ 246 (555)
.+
T Consensus 210 ~~ 211 (219)
T 1q0u_A 210 HV 211 (219)
T ss_dssp EC
T ss_pred Ee
Confidence 33
No 76
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.75 E-value=5.9e-18 Score=161.68 Aligned_cols=183 Identities=18% Similarity=0.171 Sum_probs=119.2
Q ss_pred CCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccc-----cCCCcEEEEeCc
Q 008735 22 PFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-----CRDGKLIGVTQP 95 (555)
Q Consensus 22 ~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~-----~~~~~~i~~~~P 95 (555)
.|..+. ++.+.+.+...++..++++|+++++.+.+|+++++++|||||||..+..+++.... ...+.+++++.|
T Consensus 26 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~P 105 (236)
T 2pl3_A 26 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISP 105 (236)
T ss_dssp BGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECS
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeC
Confidence 344444 56778888999999999999999999999999999999999999655444443221 123567999999
Q ss_pred cHHHHHHHHHHHHHHhCCccCCEEEEEEecC-------------CCCCchhhHHHhhc---CCCCCCCceeEeecccccc
Q 008735 96 RRVAAVTVAKRVAEESGVELGQRVGYSIRFD-------------DRTSTSTRIKEALL---DPYLSRYSAIIVDEAHERT 159 (555)
Q Consensus 96 ~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~-------------~~~~~~~~i~~~~~---~~~l~~~~~iIiDE~He~~ 159 (555)
+++++.|+.+.+..... ..+..++...... ..+.+..++...+. ...+.+++++|+||||.
T Consensus 106 t~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-- 182 (236)
T 2pl3_A 106 TRELAYQTFEVLRKVGK-NHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR-- 182 (236)
T ss_dssp SHHHHHHHHHHHHHHTT-TSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH--
T ss_pred CHHHHHHHHHHHHHHhC-CCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH--
Confidence 99999999998876653 2223333222111 11122223333222 23467899999999983
Q ss_pred cchhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCH--HHHH-h
Q 008735 160 VHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-E 236 (555)
Q Consensus 160 ~~~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~--~~~~-~ 236 (555)
+++.++...+..++..+. .+.++++||||++. +.+. .
T Consensus 183 ------------------------------------~~~~~~~~~~~~i~~~~~----~~~~~l~~SAT~~~~~~~~~~~ 222 (236)
T 2pl3_A 183 ------------------------------------ILDMGFADTMNAVIENLP----KKRQTLLFSATQTKSVKDLARL 222 (236)
T ss_dssp ------------------------------------HHHTTTHHHHHHHHHTSC----TTSEEEEEESSCCHHHHHHHHH
T ss_pred ------------------------------------HhcCCcHHHHHHHHHhCC----CCCeEEEEEeeCCHHHHHHHHH
Confidence 334444444444444443 57799999999954 3444 4
Q ss_pred hhCCCCeEEeC
Q 008735 237 YFGCAKAVHVQ 247 (555)
Q Consensus 237 ~~~~~~~~~~~ 247 (555)
++.++..+.+.
T Consensus 223 ~~~~p~~i~~~ 233 (236)
T 2pl3_A 223 SLKNPEYVWVH 233 (236)
T ss_dssp SCSSCEEEECC
T ss_pred hCCCCEEEEeC
Confidence 45555444443
No 77
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.75 E-value=8.6e-18 Score=161.79 Aligned_cols=181 Identities=18% Similarity=0.133 Sum_probs=119.0
Q ss_pred CCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccC-CCcEEEEeCccHH
Q 008735 21 KPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRV 98 (555)
Q Consensus 21 ~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~-~~~~i~~~~P~r~ 98 (555)
..|..+. ++.+.+.+...++..++++|+++++.+.+|+++++++|||||||..+..+++...... .+.+++++.|+++
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~ 122 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRE 122 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHH
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHH
Confidence 3454443 5678888999999999999999999999999999999999999976665555443222 3457999999999
Q ss_pred HHHHHHHHHHHHhCCccCCEEEEEEecC--------------CCCCchhhHHHhhc---CCCCCCCceeEeecccccccc
Q 008735 99 AAVTVAKRVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALL---DPYLSRYSAIIVDEAHERTVH 161 (555)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~~~---~~~l~~~~~iIiDE~He~~~~ 161 (555)
++.|+.+.+..... ..+..++...... ..+.+..++...+. ...+.+++++|+||||
T Consensus 123 L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah----- 196 (249)
T 3ber_A 123 LAFQISEQFEALGS-SIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD----- 196 (249)
T ss_dssp HHHHHHHHHHHHHG-GGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-----
T ss_pred HHHHHHHHHHHHhc-cCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-----
Confidence 99999988766543 1222333222111 11122233333322 1246789999999998
Q ss_pred hhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH--HHH-hhh
Q 008735 162 TDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYF 238 (555)
Q Consensus 162 ~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--~~~-~~~ 238 (555)
.+++.++...+..++..+. .+.++++||||++.+ .+. .++
T Consensus 197 ---------------------------------~l~~~~~~~~l~~i~~~~~----~~~~~l~~SAT~~~~v~~~~~~~l 239 (249)
T 3ber_A 197 ---------------------------------RILNMDFETEVDKILKVIP----RDRKTFLFSATMTKKVQKLQRAAL 239 (249)
T ss_dssp ---------------------------------HHHHTTCHHHHHHHHHSSC----SSSEEEEEESSCCHHHHHHHHHHC
T ss_pred ---------------------------------hhhccChHHHHHHHHHhCC----CCCeEEEEeccCCHHHHHHHHHHC
Confidence 3344444444444444443 578999999999653 444 455
Q ss_pred CCCCeE
Q 008735 239 GCAKAV 244 (555)
Q Consensus 239 ~~~~~~ 244 (555)
.++..+
T Consensus 240 ~~p~~i 245 (249)
T 3ber_A 240 KNPVKC 245 (249)
T ss_dssp SSCEEE
T ss_pred CCCEEE
Confidence 544333
No 78
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.74 E-value=1.5e-17 Score=158.88 Aligned_cols=177 Identities=15% Similarity=0.158 Sum_probs=116.1
Q ss_pred CCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc-CCCcEEEEeCccHHH
Q 008735 22 PFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVA 99 (555)
Q Consensus 22 ~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~-~~~~~i~~~~P~r~l 99 (555)
.|..+. ++.+.+.+...++-.++++|+++++.+.+|+++++++|||||||..+...++..... ..+.+++++.|++++
T Consensus 31 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L 110 (237)
T 3bor_A 31 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTREL 110 (237)
T ss_dssp SGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHH
Confidence 344443 667778888888888999999999999999999999999999996666665554332 235689999999999
Q ss_pred HHHHHHHHHHHhCCccCCEEEEEEe---------------cCCCCCchhhHHHhhcC--CCCCCCceeEeecccccccch
Q 008735 100 AVTVAKRVAEESGVELGQRVGYSIR---------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHT 162 (555)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~vg~~~~---------------~~~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~~ 162 (555)
+.|+.+.+...... .+..++.... .+..+.+..++...+.. ..+.++++||+||||.
T Consensus 111 ~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~----- 184 (237)
T 3bor_A 111 AQQIQKVILALGDY-MGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE----- 184 (237)
T ss_dssp HHHHHHHHHHHTTT-TTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH-----
T ss_pred HHHHHHHHHHHhhh-cCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH-----
Confidence 99999988776532 1222211111 11112233333344333 2367899999999983
Q ss_pred hHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH--HHH-hhhC
Q 008735 163 DVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFG 239 (555)
Q Consensus 163 d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--~~~-~~~~ 239 (555)
+++.++...+..++..+. .+.++++||||++.+ .+. .|+.
T Consensus 185 ---------------------------------~~~~~~~~~l~~i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~l~ 227 (237)
T 3bor_A 185 ---------------------------------MLSRGFKDQIYEIFQKLN----TSIQVVLLSATMPTDVLEVTKKFMR 227 (237)
T ss_dssp ---------------------------------HHHTTCHHHHHHHHHHSC----TTCEEEEECSSCCHHHHHHHHHHCS
T ss_pred ---------------------------------hhccCcHHHHHHHHHhCC----CCCeEEEEEEecCHHHHHHHHHHCC
Confidence 333333333333333332 678999999999653 333 5555
Q ss_pred CC
Q 008735 240 CA 241 (555)
Q Consensus 240 ~~ 241 (555)
++
T Consensus 228 ~p 229 (237)
T 3bor_A 228 DP 229 (237)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 79
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.74 E-value=2.6e-17 Score=155.84 Aligned_cols=183 Identities=14% Similarity=0.124 Sum_probs=116.0
Q ss_pred CCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc-CCCcEEEEeCccHHHH
Q 008735 23 FFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAA 100 (555)
Q Consensus 23 ~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~-~~~~~i~~~~P~r~l~ 100 (555)
|..+. ++.+.+.+...++..++++|+++++.+.+|+++++++|||||||..+...++..... ..+.+++++.|++.++
T Consensus 16 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~ 95 (224)
T 1qde_A 16 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELA 95 (224)
T ss_dssp GGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHH
T ss_pred hhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHH
Confidence 44433 567778888889999999999999999999999999999999996655555543322 2356899999999999
Q ss_pred HHHHHHHHHHhCCccCCEEEEEEec-------------CCCCCchhhHHHhhc--CCCCCCCceeEeecccccccchhHH
Q 008735 101 VTVAKRVAEESGVELGQRVGYSIRF-------------DDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVL 165 (555)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~vg~~~~~-------------~~~~~~~~~i~~~~~--~~~l~~~~~iIiDE~He~~~~~d~l 165 (555)
.|+.+.+...... .+..++..... +..+.+...+...+. ...+.+++++|+||||.
T Consensus 96 ~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~-------- 166 (224)
T 1qde_A 96 LQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE-------- 166 (224)
T ss_dssp HHHHHHHHHHTTT-SCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH--------
T ss_pred HHHHHHHHHHhcc-cCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH--------
Confidence 9999888765432 12222211110 011122233333332 23467899999999994
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH--H-HHhhhCCCC
Q 008735 166 LGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--G-FSEYFGCAK 242 (555)
Q Consensus 166 l~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--~-~~~~~~~~~ 242 (555)
+.+.++...+..++..+. ++.|+++||||++.+ . +..|++++.
T Consensus 167 ------------------------------~~~~~~~~~l~~i~~~~~----~~~~~i~lSAT~~~~~~~~~~~~~~~p~ 212 (224)
T 1qde_A 167 ------------------------------MLSSGFKEQIYQIFTLLP----PTTQVVLLSATMPNDVLEVTTKFMRNPV 212 (224)
T ss_dssp ------------------------------HHHTTCHHHHHHHHHHSC----TTCEEEEEESSCCHHHHHHHHHHCSSCE
T ss_pred ------------------------------HhhhhhHHHHHHHHHhCC----ccCeEEEEEeecCHHHHHHHHHHCCCCE
Confidence 222222222233333322 678999999999653 3 345666554
Q ss_pred eEEeCC
Q 008735 243 AVHVQG 248 (555)
Q Consensus 243 ~~~~~~ 248 (555)
.+.+.+
T Consensus 213 ~i~~~~ 218 (224)
T 1qde_A 213 RILVKK 218 (224)
T ss_dssp EEC---
T ss_pred EEEecC
Confidence 444443
No 80
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.74 E-value=2.1e-17 Score=154.30 Aligned_cols=135 Identities=16% Similarity=0.091 Sum_probs=93.3
Q ss_pred CCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccc-cCCCcEEEEeCccHHHH
Q 008735 23 FFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAA 100 (555)
Q Consensus 23 ~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~-~~~~~~i~~~~P~r~l~ 100 (555)
|..+. ++.+.+.+...++..++++|+++++.+.+++++++++|||||||..+...++.... ...+.+++++.|++.++
T Consensus 5 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 84 (206)
T 1vec_A 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELA 84 (206)
T ss_dssp GGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHH
T ss_pred hhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHH
Confidence 44433 66788888889999999999999999999999999999999999655555544332 22355799999999999
Q ss_pred HHHHHHHHHHhCCccCCEEEEEEecCC--------------CCCchhhHHHhhcC--CCCCCCceeEeecccc
Q 008735 101 VTVAKRVAEESGVELGQRVGYSIRFDD--------------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 157 (555)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~vg~~~~~~~--------------~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He 157 (555)
.|+.+.+........+..++....... .+.+..++...+.. ..+.+++++|+||||+
T Consensus 85 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 85 LQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp HHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999998877664322333332222111 11122233333332 2467899999999994
No 81
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.74 E-value=8.7e-17 Score=151.77 Aligned_cols=138 Identities=14% Similarity=0.005 Sum_probs=95.1
Q ss_pred CCCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccC-CCcEEEEeCccHH
Q 008735 21 KPFFNDS-SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRV 98 (555)
Q Consensus 21 ~~~~~~~-~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~-~~~~i~~~~P~r~ 98 (555)
..|..+. ++.+.+.+...++-.++++|.++++.+.+++++++++|||||||..+..+++...... ++.+++++.|++.
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 93 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 93 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHH
Confidence 3455554 6677788888888889999999999999999999999999999966655555543322 2447999999999
Q ss_pred HHHHHHHHHHHHhCCccCCEEEEEEec---------------CCCCCchhhHHHhhcC--CCCCCCceeEeeccccc
Q 008735 99 AAVTVAKRVAEESGVELGQRVGYSIRF---------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHER 158 (555)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~~vg~~~~~---------------~~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~ 158 (555)
++.|+.+.+.+......+..++..... +..+.+...+...+.. ..+.+++++|+||||..
T Consensus 94 L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~ 170 (220)
T 1t6n_A 94 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 170 (220)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHH
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHH
Confidence 999999988776543223333322211 1111222233333322 24678999999999954
No 82
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.74 E-value=9.1e-18 Score=162.91 Aligned_cols=168 Identities=16% Similarity=0.178 Sum_probs=114.5
Q ss_pred ChhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcc-----ccCCCcEEEEeCccHHHHH
Q 008735 27 SSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG-----FCRDGKLIGVTQPRRVAAV 101 (555)
Q Consensus 27 ~~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~-----~~~~~~~i~~~~P~r~l~~ 101 (555)
.++.+.+.+...++..++++|.++++.+..|++++++||||||||..+...++... ....+.+++++.|+++++.
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~ 140 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAM 140 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHH
Confidence 45667788888899999999999999999999999999999999955444443321 1123567999999999999
Q ss_pred HHHHHHHHHhCCccCCEEEEEEecCC--------------CCCchhhHHHhhc-C--CCCCCCceeEeecccccccchhH
Q 008735 102 TVAKRVAEESGVELGQRVGYSIRFDD--------------RTSTSTRIKEALL-D--PYLSRYSAIIVDEAHERTVHTDV 164 (555)
Q Consensus 102 ~~~~~~~~~~~~~~~~~vg~~~~~~~--------------~~~~~~~i~~~~~-~--~~l~~~~~iIiDE~He~~~~~d~ 164 (555)
|+.+.+.+.... .+..++....... .+.+..++...+. . ..+.++++||+||||
T Consensus 141 q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah-------- 211 (262)
T 3ly5_A 141 QTFGVLKELMTH-HVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD-------- 211 (262)
T ss_dssp HHHHHHHHHTTT-CCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH--------
T ss_pred HHHHHHHHHHhh-cCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH--------
Confidence 999998776542 2333333222111 1122222222222 2 347889999999998
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCH--HHHHhh
Q 008735 165 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFSEY 237 (555)
Q Consensus 165 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~--~~~~~~ 237 (555)
.+++.+++..+..++..+. .+.|+++||||++. +.+.+.
T Consensus 212 ------------------------------~l~~~~~~~~l~~i~~~~~----~~~q~l~~SAT~~~~v~~~~~~ 252 (262)
T 3ly5_A 212 ------------------------------RILDVGFEEELKQIIKLLP----TRRQTMLFSATQTRKVEDLARI 252 (262)
T ss_dssp ------------------------------HHHHTTCHHHHHHHHHHSC----SSSEEEEECSSCCHHHHHHHHH
T ss_pred ------------------------------HHhhhhHHHHHHHHHHhCC----CCCeEEEEEecCCHHHHHHHHH
Confidence 4555555555555555554 56899999999954 445543
No 83
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.73 E-value=3.2e-17 Score=153.13 Aligned_cols=172 Identities=19% Similarity=0.141 Sum_probs=113.4
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc----CCCcEEEEeCccHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC----RDGKLIGVTQPRRVAAVTV 103 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~----~~~~~i~~~~P~r~l~~~~ 103 (555)
++.+.+.+...++..++++|+++++.+.+++++++++|||||||..+..+++..... ..+.+++++.|++.++.|+
T Consensus 9 ~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~ 88 (207)
T 2gxq_A 9 KPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQV 88 (207)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHH
Confidence 567778888899999999999999999999999999999999997655555544321 2356799999999999999
Q ss_pred HHHHHHHhCCccCCEEEEEEecC--------------CCCCchhhHHHhhc--CCCCCCCceeEeecccccccchhHHHH
Q 008735 104 AKRVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLG 167 (555)
Q Consensus 104 ~~~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~~~--~~~l~~~~~iIiDE~He~~~~~d~ll~ 167 (555)
.+.+...... ..++...... ..+.+...+...+. ...+.+++++|+||||+
T Consensus 89 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~---------- 155 (207)
T 2gxq_A 89 ASELTAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE---------- 155 (207)
T ss_dssp HHHHHHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH----------
T ss_pred HHHHHHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH----------
Confidence 9998877543 1122111111 11112222222222 23467899999999993
Q ss_pred HHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCH--HHHH-hhhCCCCeE
Q 008735 168 LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFGCAKAV 244 (555)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~--~~~~-~~~~~~~~~ 244 (555)
+++.++...+..++..+. .+.++++||||++. +.+. .|++++..+
T Consensus 156 ----------------------------~~~~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 203 (207)
T 2gxq_A 156 ----------------------------MLSMGFEEEVEALLSATP----PSRQTLLFSATLPSWAKRLAERYMKNPVLI 203 (207)
T ss_dssp ----------------------------HHHTTCHHHHHHHHHTSC----TTSEEEEECSSCCHHHHHHHHHHCSSCEEE
T ss_pred ----------------------------hhccchHHHHHHHHHhCC----ccCeEEEEEEecCHHHHHHHHHHcCCCeEE
Confidence 223333333333333332 57899999999964 4454 455544333
No 84
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=156.70 Aligned_cols=130 Identities=19% Similarity=0.168 Sum_probs=89.2
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccc--cCCCcEEEEeCccHHHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAK 105 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~--~~~~~~i~~~~P~r~l~~~~~~ 105 (555)
++.+.+.+...++..++++|+++++.+.+|+++++++|||||||..+...++.... ...+.+++++.|+++++.|+.+
T Consensus 37 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~ 116 (245)
T 3dkp_A 37 NSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHR 116 (245)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHH
Confidence 44566777888888999999999999999999999999999999654444433222 2345679999999999999999
Q ss_pred HHHHHhCCccCCEEEEEEe---------------cCCCCCchhhHHHhhcC----CCCCCCceeEeeccccc
Q 008735 106 RVAEESGVELGQRVGYSIR---------------FDDRTSTSTRIKEALLD----PYLSRYSAIIVDEAHER 158 (555)
Q Consensus 106 ~~~~~~~~~~~~~vg~~~~---------------~~~~~~~~~~i~~~~~~----~~l~~~~~iIiDE~He~ 158 (555)
.+.+.... .+..+..... .+..+.+..++..++.. ..+++++++|+||||+.
T Consensus 117 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~ 187 (245)
T 3dkp_A 117 ELIKISEG-TGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKL 187 (245)
T ss_dssp HHHHHTTT-SCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHH
T ss_pred HHHHHhcc-cCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHh
Confidence 88776542 2222211100 01112333444444432 24778999999999953
No 85
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.72 E-value=8e-18 Score=161.84 Aligned_cols=103 Identities=33% Similarity=0.622 Sum_probs=91.5
Q ss_pred cCCcC-CCCCcHHHHHHHHHHHHHcCCccCCCCCCHHHHhhcccCCCChHHHHHHHHhhhcCCHHHHHHHHHhhcCCCcc
Q 008735 449 IGFDF-MEKPSRASIIKSLEQLFLLGALTDDCKLSDPVGHQMARLPLDPIYSKALIVAGQFNCLEEMLITVAMLSVESIF 527 (555)
Q Consensus 449 ~~~~~-~~~p~~~~~~~al~~L~~~g~l~~~~~~T~~lG~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~i~a~~~~~~~~ 527 (555)
..|+| ++||+.+++.+|++.|..+||||++|++|+ +|+.|+++|++|++||+|+.+..++|++++++|+|+|+++++|
T Consensus 6 ~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~-lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f 84 (270)
T 3i4u_A 6 PEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTR-LGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF 84 (270)
T ss_dssp --------CCHHHHHHHHHHHHHHHTSBCTTSCBCH-HHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCB
T ss_pred hccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccH-HHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCccc
Confidence 45778 999999999999999999999999999997 9999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHhhhccCCCCCCCCC
Q 008735 528 FRSPGEVRRGKKCNEIFCKSRWRSPHF 554 (555)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (555)
..|.++++.++++|++|.+.. |||+
T Consensus 85 ~~p~~~~~~a~~~~~~f~~~~--sD~l 109 (270)
T 3i4u_A 85 YRPKDKQALADQKKAKFHQTE--GDHL 109 (270)
T ss_dssp CCCGGGHHHHHHHHHTTCBTT--BHHH
T ss_pred cCCchhHHHHHHHHHHccCCC--ChHH
Confidence 999999999999999998643 6663
No 86
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.69 E-value=8.3e-17 Score=155.39 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=114.2
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc----------CCCcEEEEeCccH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC----------RDGKLIGVTQPRR 97 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~----------~~~~~i~~~~P~r 97 (555)
++.+.+.+...++..++++|.++++.+.+|+++++++|||||||..+...++..... ..+.+++++.|++
T Consensus 31 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~ 110 (253)
T 1wrb_A 31 DPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTR 110 (253)
T ss_dssp CCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCH
Confidence 344556677788889999999999999999999999999999995544444332211 1235799999999
Q ss_pred HHHHHHHHHHHHHhCCccCCEEEEEEecC--------------CCCCchhhHHHhhcC--CCCCCCceeEeecccccccc
Q 008735 98 VAAVTVAKRVAEESGVELGQRVGYSIRFD--------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVH 161 (555)
Q Consensus 98 ~l~~~~~~~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~~i~~~~~~--~~l~~~~~iIiDE~He~~~~ 161 (555)
+++.|+.+.+....... +..++...... ..+.+..++...+.. ..+.+++++|+||||
T Consensus 111 ~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah----- 184 (253)
T 1wrb_A 111 ELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD----- 184 (253)
T ss_dssp HHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHH-----
T ss_pred HHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHH-----
Confidence 99999999887765422 22222211111 111222333333332 246788999999998
Q ss_pred hhHHHHHHHHHHHhhcccccCCCCCCCCCCcchhhhccCCCCcccchhhhccccCCCCceEEEeccCCCHH--HHH-hhh
Q 008735 162 TDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYF 238 (555)
Q Consensus 162 ~d~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~--~~~-~~~ 238 (555)
.+++.++...+..++..+......+.|+++||||++.+ .+. .++
T Consensus 185 ---------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l 231 (253)
T 1wrb_A 185 ---------------------------------RMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL 231 (253)
T ss_dssp ---------------------------------HHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHC
T ss_pred ---------------------------------HHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHc
Confidence 34444555555555554322111367999999999653 444 555
Q ss_pred CCCCeEEe
Q 008735 239 GCAKAVHV 246 (555)
Q Consensus 239 ~~~~~~~~ 246 (555)
.++..+.+
T Consensus 232 ~~~~~i~~ 239 (253)
T 1wrb_A 232 YNYIFMTV 239 (253)
T ss_dssp SSCEEEEE
T ss_pred CCCEEEEE
Confidence 55444444
No 87
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.58 E-value=8.2e-14 Score=150.27 Aligned_cols=118 Identities=19% Similarity=0.115 Sum_probs=76.4
Q ss_pred HHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCc
Q 008735 35 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE 114 (555)
Q Consensus 35 ~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~ 114 (555)
...-..+.++++|...+..+.+|+ +..+.||+|||..+.+.++.... .+..+.++.|++.||.+.++.+..... .
T Consensus 72 s~R~lG~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL--~G~qv~VvTPTreLA~Qdae~m~~l~~-~ 146 (997)
T 2ipc_A 72 AKRYLGMRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL--TGKGVHVVTVNDYLARRDAEWMGPVYR-G 146 (997)
T ss_dssp HHHHTCCCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT--TCSCCEEEESSHHHHHHHHHHHHHHHH-T
T ss_pred HHHHhCCCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH--hCCCEEEEeCCHHHHHHHHHHHHHHHH-h
Confidence 333355588999999999999999 88999999999444444422222 245689999999999999888766543 3
Q ss_pred cCCEEEEEEecCC------------CCCchhhH-HHhhcC--------CCCC---CCceeEeecccc
Q 008735 115 LGQRVGYSIRFDD------------RTSTSTRI-KEALLD--------PYLS---RYSAIIVDEAHE 157 (555)
Q Consensus 115 ~~~~vg~~~~~~~------------~~~~~~~i-~~~~~~--------~~l~---~~~~iIiDE~He 157 (555)
.|..++....... ...+...+ ..++.+ ..++ ++.++||||+|.
T Consensus 147 lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 147 LGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp TTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred cCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 3445553332111 11122222 112222 2366 899999999996
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=134.75 Aligned_cols=128 Identities=20% Similarity=0.091 Sum_probs=80.6
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc----CCCcEEEEeCccHHHHHH-HH
Q 008735 30 RRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC----RDGKLIGVTQPRRVAAVT-VA 104 (555)
Q Consensus 30 ~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~----~~~~~i~~~~P~r~l~~~-~~ 104 (555)
.+.........++++++|.++++.+.+++++++.+|||+|||+++..++...... ..+.+++++.|++.++.| ..
T Consensus 21 ~~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~ 100 (216)
T 3b6e_A 21 NVAARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFR 100 (216)
T ss_dssp HHHHHTCCSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHH
T ss_pred hhhcccCccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHH
Confidence 3444555667889999999999999999999999999999997666655443211 124578899999999988 55
Q ss_pred HHHHHHhCCccCCEEEEEEec--------------CCCCCchhhHHHhhcC--------CCCCCCceeEeecccccc
Q 008735 105 KRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--------PYLSRYSAIIVDEAHERT 159 (555)
Q Consensus 105 ~~~~~~~~~~~~~~vg~~~~~--------------~~~~~~~~~i~~~~~~--------~~l~~~~~iIiDE~He~~ 159 (555)
+.+...... +..++..... +..+.+...+...+.. ..+.++++||+||||+..
T Consensus 101 ~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 101 KEFQPFLKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 175 (216)
T ss_dssp HTHHHHHTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC----
T ss_pred HHHHHHhcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhc
Confidence 556555443 1122211110 0111222223233332 346789999999999753
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.52 E-value=4e-14 Score=151.29 Aligned_cols=127 Identities=16% Similarity=0.159 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEE-
Q 008735 268 ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVIL- 346 (555)
Q Consensus 268 ~~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlv- 346 (555)
.....+..+... .+|.+|||++|....+.+++.+.+ ..+ ..++.. .+|.++++.|++|. .|++
T Consensus 371 ~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~-----------~~~-~~q~~~--~~~~~~l~~f~~~~-~il~~ 434 (540)
T 2vl7_A 371 IYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG-----------IPV-IEENKK--TRHEEVLELMKTGK-YLVML 434 (540)
T ss_dssp HHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT-----------SCE-EESTTT--CCHHHHHHHHHTSC-CEEEE
T ss_pred HHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc-----------Cce-EecCCC--CcHHHHHHHHhcCC-eEEEE
Confidence 344444444443 478899999999999998876632 222 335543 46778888888754 5666
Q ss_pred -ecCccccccccCC----eEEEEeCCcccceeecCCC-------------CccccceeecCHHhHHHHhcccCCCC--CC
Q 008735 347 -ATNIAETSVTIPG----IKYVIDPGFVKARLYDPVK-------------GMESLLVVPISKAQALQRSGRAGREG--PG 406 (555)
Q Consensus 347 -aT~~~e~Gvdip~----v~~VId~g~~~~~~yd~~~-------------~~~~l~~~p~s~~~~~Qr~GRaGR~~--~G 406 (555)
+|..+.+|||+|+ +++||..|+.-...-|+.. +... ...|.......|-+||+-|.. .|
T Consensus 435 V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Q~~GR~iR~~~D~g 513 (540)
T 2vl7_A 435 VMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDS-IIHDLTAIVIKQTIGRAFRDPNDYV 513 (540)
T ss_dssp EC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHH-HHHHHHHHHHHHHHHHHCCSTTCCC
T ss_pred EecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHHHHHhCCcccCCCccE
Confidence 8999999999997 8999988876443322210 1100 012223677899999999976 67
Q ss_pred EEEEc
Q 008735 407 KCFRL 411 (555)
Q Consensus 407 ~~~~l 411 (555)
..+.+
T Consensus 514 ~v~ll 518 (540)
T 2vl7_A 514 KIYLC 518 (540)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65544
No 90
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.49 E-value=1.9e-14 Score=139.59 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=85.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCC-CcE-EEEecCccccccccC
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRK-VILATNIAETSVTIP 358 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g-~~~-vlvaT~~~e~Gvdip 358 (555)
.+.++|||++.+..++.+...|.+.. ++.+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 36789999999999999999998742 56788899999999999999999988 666 799999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC---CCEEEEccChhhH
Q 008735 359 GIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEF 417 (555)
Q Consensus 359 ~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~ 417 (555)
++++||+ || .|.+...+.||+||++|.| +-.+|++++....
T Consensus 183 ~a~~VI~--------~d----------~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 183 SANRVIH--------FD----------RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp TCSEEEE--------CS----------CCSCTTTC--------------CCEEEEEEETTSH
T ss_pred cCCEEEE--------EC----------CCCChhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 9999999 88 5778889999999999999 3456888866543
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.39 E-value=6.7e-13 Score=126.34 Aligned_cols=108 Identities=21% Similarity=0.134 Sum_probs=72.6
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEE
Q 008735 41 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 120 (555)
Q Consensus 41 l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg 120 (555)
..++++|.++++.+.+++++++++|||+|||.++..++... +..++++.|++.++.|..+.+.+ ++.. .++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~-~~~~---~v~ 162 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-FGEE---YVG 162 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGG-GCGG---GEE
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHh-CCCC---eEE
Confidence 47799999999999999999999999999997776666554 45688889999999998888776 4432 022
Q ss_pred EEEecCC-----CCCchhhHHHhhcCCCCCCCceeEeeccccc
Q 008735 121 YSIRFDD-----RTSTSTRIKEALLDPYLSRYSAIIVDEAHER 158 (555)
Q Consensus 121 ~~~~~~~-----~~~~~~~i~~~~~~~~l~~~~~iIiDE~He~ 158 (555)
....... .+.+...+.... .....++++|||||+|..
T Consensus 163 ~~~g~~~~~~~i~v~T~~~l~~~~-~~~~~~~~llIiDEaH~l 204 (237)
T 2fz4_A 163 EFSGRIKELKPLTVSTYDSAYVNA-EKLGNRFMLLIFDEVHHL 204 (237)
T ss_dssp EESSSCBCCCSEEEEEHHHHHHTH-HHHTTTCSEEEEECSSCC
T ss_pred EEeCCCCCcCCEEEEeHHHHHhhH-HHhcccCCEEEEECCccC
Confidence 1111110 011111111111 112356899999999954
No 92
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.38 E-value=4.2e-13 Score=131.50 Aligned_cols=117 Identities=13% Similarity=0.034 Sum_probs=75.5
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEE
Q 008735 41 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 120 (555)
Q Consensus 41 l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg 120 (555)
+.++++|.++++.+..+++.++++|||+|||.++..++..... .++.+++++.|++.++.|..+.+.+..... ...++
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~~ 189 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQMADDFVDYRLFS-HAMIK 189 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHH-HCSSEEEEECSSHHHHHHHHHHHHHHTSCC-GGGEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHhcccc-cceEE
Confidence 5899999999999988888999999999999666554443221 223479999999999999999987764321 11222
Q ss_pred EEEecCCCCC---chhhH-----HHhhcC--CCCCCCceeEeecccccc
Q 008735 121 YSIRFDDRTS---TSTRI-----KEALLD--PYLSRYSAIIVDEAHERT 159 (555)
Q Consensus 121 ~~~~~~~~~~---~~~~i-----~~~~~~--~~l~~~~~iIiDE~He~~ 159 (555)
.......... ....+ ..+... ..+.++++||+||||...
T Consensus 190 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~ 238 (282)
T 1rif_A 190 KIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLAT 238 (282)
T ss_dssp ECSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCC
T ss_pred EEeCCCcchhhhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCC
Confidence 1111111100 00000 112111 246788999999999543
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.27 E-value=2e-10 Score=123.05 Aligned_cols=174 Identities=16% Similarity=0.148 Sum_probs=101.7
Q ss_pred ceEEEeccCC-CHHHHHhhhCCC-CeEE----e-CCccccce-EEEcC--CCC------CChHHHHHHHHHHHHhcCCCC
Q 008735 220 LKLIIMSASL-DARGFSEYFGCA-KAVH----V-QGRQFPVE-ILYTL--YPE------PDYLDATLITIFQVHLDEAPG 283 (555)
Q Consensus 220 ~~ii~~SAT~-~~~~~~~~~~~~-~~~~----~-~~~~~~v~-~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~ 283 (555)
..+|++|||+ +.+.+.+.+|-. +... . -+.+++-+ ..+.. .+. ..+.......+..+... .+|
T Consensus 316 ~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~-~~g 394 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ-AKA 394 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH-CSS
T ss_pred ceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh-CCC
Confidence 5899999999 555566767654 2210 0 12222111 11211 111 12344555555555544 367
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEec--CccccccccC---
Q 008735 284 DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT--NIAETSVTIP--- 358 (555)
Q Consensus 284 ~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT--~~~e~Gvdip--- 358 (555)
.+|||+||....+.+++. .+..+..-..+++..+..+.++ +++ --|++|| ..+..|||+|
T Consensus 395 ~~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~gg~~~EGiD~~d~~ 459 (551)
T 3crv_A 395 NVLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGKGKLAEGIELRNND 459 (551)
T ss_dssp EEEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESSCCSCCSSCCEETT
T ss_pred CEEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEecceecccccccccC
Confidence 899999999998888751 1334444344566665555554 223 3799998 6899999999
Q ss_pred --CeEEEEeCCcccceeecCC-----------CCcccc---ceeecCHHhHHHHhcccCCCC--CCEEEEc
Q 008735 359 --GIKYVIDPGFVKARLYDPV-----------KGMESL---LVVPISKAQALQRSGRAGREG--PGKCFRL 411 (555)
Q Consensus 359 --~v~~VId~g~~~~~~yd~~-----------~~~~~l---~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l 411 (555)
..+.||-.|+.-... ||. .|.... -..| ......|-+||+=|.. .|..+.+
T Consensus 460 g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 528 (551)
T 3crv_A 460 RSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCNVWLL 528 (551)
T ss_dssp EESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEEEEEE
T ss_pred CcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEEEEEe
Confidence 367777666654433 332 121111 2234 6677889999999987 4554444
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.22 E-value=2.4e-06 Score=92.18 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcc--ccCCCcEEEEeCccHHHHHHHHHHHH
Q 008735 44 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG--FCRDGKLIGVTQPRRVAAVTVAKRVA 108 (555)
Q Consensus 44 ~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~--~~~~~~~i~~~~P~r~l~~~~~~~~~ 108 (555)
.+.|++++..+..+++++++|++||||||++..++.... ....+.+++++.|+..++.++.+.+.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~ 217 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLG 217 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHH
Confidence 578999999999999999999999999977655543221 11235579999999999988876654
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.71 E-value=0.0001 Score=78.59 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=51.2
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHH
Q 008735 40 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
...+++.|++++..+..++.++|+||.|+||||++..++.... ..+..++++.|+..++..+.+.
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~--~~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAE--SLGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEESSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEecCcHHHHHHhHhh
Confidence 3456889999999999999999999999999987766554322 2356788999998888766554
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.69 E-value=0.00014 Score=75.69 Aligned_cols=72 Identities=18% Similarity=0.071 Sum_probs=49.8
Q ss_pred HHhhcCCCcHHHHHHHHHHHhc----CC-eEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHH
Q 008735 35 LQQRKSLPIASVEKRLVEEVRK----ND-ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRV 107 (555)
Q Consensus 35 ~~~~~~l~~~~~Q~~~i~~i~~----~~-~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~ 107 (555)
.....+-.+++-|++++..+.. ++ .++|.|+.|||||+++..++...... +...++++.|+..++..+.+++
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~-~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST-GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSHHHHHHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCceEEEecCcHHHHHHHHhhh
Confidence 3445566778899999987643 24 99999999999998776555433221 2236888899988887766554
No 97
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.63 E-value=7e-05 Score=80.85 Aligned_cols=175 Identities=23% Similarity=0.305 Sum_probs=97.6
Q ss_pred ceEEEeccCC-CHHHHHhhhCCC-CeEEeCCccccce---EEEcCCC-------CCChHHHHHHHHHHHHhcCCCCcEEE
Q 008735 220 LKLIIMSASL-DARGFSEYFGCA-KAVHVQGRQFPVE---ILYTLYP-------EPDYLDATLITIFQVHLDEAPGDILV 287 (555)
Q Consensus 220 ~~ii~~SAT~-~~~~~~~~~~~~-~~~~~~~~~~~v~---~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~iLV 287 (555)
..+|++|||+ +.+.+.+.+|-. ..+.++ .+++.+ ..+.... ...+.......+..+.... +|.+||
T Consensus 376 ~~~il~SaTL~p~~~~~~~lGl~~~~~~~~-spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g~~lv 453 (620)
T 4a15_A 376 SKTIHMSGTLDPFDFYSDITGFEIPFKKIG-EIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KKNTIV 453 (620)
T ss_dssp SEEEEEESSCCSHHHHHHHHCCCCCEEECC-CCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CSCEEE
T ss_pred CeEEEEccCCCcHHHHHHHhCCCceeeecC-CCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CCCEEE
Confidence 3579999999 656677666643 222222 222211 2221111 1112334444455554433 677999
Q ss_pred EcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecC--ccccccccCC--eEEE
Q 008735 288 FLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN--IAETSVTIPG--IKYV 363 (555)
Q Consensus 288 F~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~--~~e~Gvdip~--v~~V 363 (555)
|++|....+.+++.|. . .+.. ..-+++..++..+++.|+ +.-.|+++|. .+..|||+|+ .+.|
T Consensus 454 lF~Sy~~l~~v~~~l~-~--------~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~v 520 (620)
T 4a15_A 454 YFPSYSLMDRVENRVS-F--------EHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMI 520 (620)
T ss_dssp EESCHHHHHHHTSSCC-S--------CCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEE
T ss_pred EeCCHHHHHHHHHHHH-h--------cchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEE
Confidence 9999999988877664 1 0222 455666678889999998 8888999975 8999999985 5567
Q ss_pred EeCCcccceeecCC-------------CCccccceeecCHHhHHHHhcccCCCC--CCEEEEc
Q 008735 364 IDPGFVKARLYDPV-------------KGMESLLVVPISKAQALQRSGRAGREG--PGKCFRL 411 (555)
Q Consensus 364 Id~g~~~~~~yd~~-------------~~~~~l~~~p~s~~~~~Qr~GRaGR~~--~G~~~~l 411 (555)
|-.|+.=..- ||. .++..--..| ......|-+||+=|.. .|..+.+
T Consensus 521 iI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 521 ILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp EESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred EEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 7666542221 111 0110001123 4566789999999977 5665554
No 98
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.38 E-value=0.0002 Score=77.30 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=48.8
Q ss_pred CcHHHHHHHHH----HHhcCCeEEEEcCCCCchh--hHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHH
Q 008735 42 PIASVEKRLVE----EVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 110 (555)
Q Consensus 42 ~~~~~Q~~~i~----~i~~~~~~ii~apTGsGKT--~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~ 110 (555)
.+++.|.+++. ++.+|+++++.||||+||| +++|.+..... .+.+++++.|++.++.|+.+.+...
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 46788887775 5678999999999999999 55555443221 2458999999999999888765543
No 99
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.34 E-value=0.00057 Score=61.54 Aligned_cols=40 Identities=30% Similarity=0.396 Sum_probs=29.2
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 97 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r 97 (555)
.|+..+++||.||||||++...+..... .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~--~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL--GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH--TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeecc
Confidence 4778999999999999988766654422 245677777773
No 100
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.23 E-value=0.0019 Score=64.95 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=54.8
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHH
Q 008735 40 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 110 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~ 110 (555)
.+.++++|..++..+...+.+++..+-+.|||+++..+++......++..++++.|++..+..+...+...
T Consensus 161 p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp ECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 35779999999998877788999999999999776666554333345668999999998887666555443
No 101
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.22 E-value=0.00044 Score=64.11 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=30.2
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccH
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 97 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r 97 (555)
..|..++++||+|+||||.+...+..... .+.+++++.|..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~--~g~kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY--ADVKYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEEecc
Confidence 35778999999999999988877765532 245677776654
No 102
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.21 E-value=0.00062 Score=60.90 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=21.7
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.|+.+++.||+|+||||++..++...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999998887766443
No 103
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.16 E-value=0.00082 Score=58.16 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=21.3
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++.+++.||+|+|||+++..+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999888666543
No 104
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.12 E-value=0.0037 Score=63.78 Aligned_cols=92 Identities=24% Similarity=0.238 Sum_probs=50.4
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEE--EeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIG--VTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 134 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~--~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 134 (555)
+..++++||+|+||||++..++...... +.+++ -.-+.|..+......+....+..+. ...........
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~-------~~~~~~dp~~i 167 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR--GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY-------GEPNNQNPIEI 167 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEE-------CCTTCSCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecCccchhHHHHHHHHHHhcCCcee-------eccccCCHHHH
Confidence 3588999999999998877666444322 33343 3346666666655555554442210 00111111111
Q ss_pred HHHhhcCCCCCCCceeEeecccc
Q 008735 135 IKEALLDPYLSRYSAIIVDEAHE 157 (555)
Q Consensus 135 i~~~~~~~~l~~~~~iIiDE~He 157 (555)
....+..-...+++++|||++-.
T Consensus 168 ~~~al~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 168 AKKGVDIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HHHHHHHTTTTTCSEEEEEECCC
T ss_pred HHHHHHHHHhcCCCEEEEECCCC
Confidence 12222222335799999999854
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.11 E-value=0.0017 Score=69.82 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=56.4
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhC
Q 008735 41 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 112 (555)
Q Consensus 41 l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~ 112 (555)
+.++++|+.++..+...+.+++.++-|+|||+++..+++......++..++++.|++..+..+...+.....
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 457899999999887778899999999999987765555444444566899999999988887776665543
No 106
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.05 E-value=0.00084 Score=73.03 Aligned_cols=66 Identities=24% Similarity=0.329 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHHHhc-CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 42 PIASVEKRLVEEVRK-NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 42 ~~~~~Q~~~i~~i~~-~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
.+.+.|.+++..+.. ....+|.||+|+|||+.+..++..... .+.+|+++.|+-.++..+.+++..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~--~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK--QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEcCchHHHHHHHHHHHh
Confidence 357889999988765 558999999999999766665544322 356899999999999999988754
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.86 E-value=0.0017 Score=58.66 Aligned_cols=40 Identities=28% Similarity=0.263 Sum_probs=30.4
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 97 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r 97 (555)
.|+..+++||.||||||.+...+.... ..+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~--~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK--IAKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEecc
Confidence 467899999999999988877766553 2356788888874
No 108
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.86 E-value=0.0017 Score=70.22 Aligned_cols=67 Identities=18% Similarity=0.334 Sum_probs=53.6
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 42 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 42 ~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
.+.+.|.+++..+..+..++|.||+|+|||+++..++.... ...+.+|+++.|+..++.++.+++.+
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~-~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLA-RQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHH-TSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 35789999999998889999999999999977665554322 11456899999999999998888754
No 109
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.01 Score=57.89 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=21.0
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+.+++|.||+|+|||+++-.++.+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999998877766543
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.72 E-value=0.004 Score=56.81 Aligned_cols=41 Identities=24% Similarity=0.178 Sum_probs=30.4
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 98 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~ 98 (555)
.|+..+++||-||||||.+...+..... .+.+++++.|...
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~--~g~kVli~k~~~d 67 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF--AKQHAIVFKPCID 67 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEECC--
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEeccC
Confidence 4678889999999999888777765532 3567888888764
No 111
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.65 E-value=0.0048 Score=57.27 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+++.||+||||||++..++...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999887777443
No 112
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.63 E-value=0.003 Score=69.89 Aligned_cols=67 Identities=18% Similarity=0.334 Sum_probs=53.4
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 42 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 42 ~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
.+.+.|.+++..+..+..++|.||+|+|||+++..++.... ...+.+|+++.|+..++..+.+++..
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~-~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLA-RQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHH-TTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 35789999999998889999999999999977665554322 11456899999999999988888754
No 113
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.0022 Score=71.09 Aligned_cols=66 Identities=24% Similarity=0.354 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHH
Q 008735 43 IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 109 (555)
Q Consensus 43 ~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~ 109 (555)
+.+.|.+++..+..+..++|.||.|||||+.+..++..... ..+.+|+++.|+..++..+.+++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~-~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSK-IHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHh-CCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 56899999999988899999999999999766555432211 1356799999999999999988765
No 114
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.61 E-value=0.0061 Score=55.35 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+.+++.||+|+|||+++..+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999998876655443
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.61 E-value=0.0085 Score=58.97 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=24.8
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
+..+++.||+|+|||+++..+....... +..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEE
Confidence 4689999999999998887666543211 33455554
No 116
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.59 E-value=0.0078 Score=58.63 Aligned_cols=105 Identities=21% Similarity=0.228 Sum_probs=52.9
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEe--CccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 133 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~--~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 133 (555)
.++.++++||+||||||++..++...... +.+++++ -+.|..+......+.+..+..+ .... . .....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~------~~~~-s-~~~~~ 172 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRAAAIEQLKIWGERVGATV------ISHS-E-GADPA 172 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCHHHHHHHHHHHHHHTCEE------ECCS-T-TCCHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccHHHHHHHHHHHHHcCCcE------EecC-C-ccCHH
Confidence 34688999999999998887766544322 3334333 3445554444444444433221 1111 1 11111
Q ss_pred hH-HHhhcCCCCCCCceeEeecccccccchhHHHHHHHH
Q 008735 134 RI-KEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKK 171 (555)
Q Consensus 134 ~i-~~~~~~~~l~~~~~iIiDE~He~~~~~d~ll~~l~~ 171 (555)
.+ ...+......+++++|+|++-. ....+.++..++.
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~-~~~~~~l~~eL~~ 210 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR-LHTKKNLMEELRK 210 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC-CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc-hhhHHHHHHHHHH
Confidence 11 1122222345789999999852 2333344444444
No 117
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.48 E-value=0.014 Score=59.49 Aligned_cols=91 Identities=25% Similarity=0.272 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEE--eCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGV--TQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 134 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~--~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 134 (555)
...++++|++|+||||++..++..... .+.++++ .-|.|..+..+...+....+..+ | ...........
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~--~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv-----~--~~~~~~dp~~i 170 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK--RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV-----F--GNPQEKDAIKL 170 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE-----E--CCTTCCCHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE-----E--ecCCCCCHHHH
Confidence 358899999999999887666644322 2334433 34677777666666655544321 1 00111111111
Q ss_pred HHHhhcCCCCCCCceeEeeccc
Q 008735 135 IKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 135 i~~~~~~~~l~~~~~iIiDE~H 156 (555)
....+..-.-.+++++|||.+=
T Consensus 171 ~~~al~~a~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 171 AKEGVDYFKSKGVDIIIVDTAG 192 (443)
T ss_dssp HHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEEECCC
Confidence 1122211112458999999984
No 118
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.46 E-value=0.0074 Score=58.57 Aligned_cols=87 Identities=30% Similarity=0.350 Sum_probs=45.9
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEe--CccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 133 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~--~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 133 (555)
.++.++++||+|+||||++..+....... .|.++.++ -+.+..+.+....+....+..+. . . ....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~--------~-~~~~ 171 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE--V--------C-YTKE 171 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--B--------C-SSHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCcccchHHHHHHHHHHhcCCCeE--e--------c-CCHH
Confidence 46799999999999998887766544321 23334333 24444444333333333322110 0 0 1112
Q ss_pred hHHHhhcCCCCCCCceeEeeccc
Q 008735 134 RIKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 134 ~i~~~~~~~~l~~~~~iIiDE~H 156 (555)
.+...+. .+.+++++|+|.+-
T Consensus 172 ~l~~al~--~~~~~dlvIiDT~G 192 (296)
T 2px0_A 172 EFQQAKE--LFSEYDHVFVDTAG 192 (296)
T ss_dssp HHHHHHH--HGGGSSEEEEECCC
T ss_pred HHHHHHH--HhcCCCEEEEeCCC
Confidence 2222222 13678999999653
No 119
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.44 E-value=0.0069 Score=59.78 Aligned_cols=87 Identities=17% Similarity=0.175 Sum_probs=49.9
Q ss_pred HHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCC
Q 008735 50 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRT 129 (555)
Q Consensus 50 ~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~ 129 (555)
+--.+..|+.++|+|||||||||++..++-.... ..+.+.+--+. .. .-......+++..+
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~-e~-----------~~~~~~~~i~~~~g----- 224 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTE-EI-----------VFKHHKNYTQLFFG----- 224 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSC-CC-----------CCSSCSSEEEEECB-----
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCee-cc-----------ccccchhEEEEEeC-----
Confidence 3445678999999999999999988776544322 22334333221 10 00012234554322
Q ss_pred CchhhHHHhhcCCCCCCCceeEeeccc
Q 008735 130 STSTRIKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 130 ~~~~~i~~~~~~~~l~~~~~iIiDE~H 156 (555)
...+....+......+.+++++||.-
T Consensus 225 -gg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 225 -GNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp -TTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred -CChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 22233344444456778999999984
No 120
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.37 E-value=0.0041 Score=61.96 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=22.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
...+..++|+|||||||||++-.++-..
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3466799999999999999887765443
No 121
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.33 E-value=0.015 Score=54.12 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=20.6
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+..+++.||+|+|||+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999888666543
No 122
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.26 E-value=0.0039 Score=57.15 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 44 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 44 ~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+--|..+++.+..|+.+.|.||+||||||++-.+.-.
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3346678888999999999999999999998777644
No 123
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.26 E-value=0.014 Score=57.33 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=46.9
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEe-CccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchhh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT-QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 134 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~-~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 134 (555)
.+..+.++||+||||||++..+....... ++...+.- .+.+..+......++...+. .+..+... ......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~g~D~~r~~a~eql~~~~~~~gv------~~v~q~~~-~~p~~~ 199 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAASDTFRAGAIEQLEEHAKRIGV------KVIKHSYG-ADPAAV 199 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSTTHHHHHHHHHHHTTC------EEECCCTT-CCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEeecccccchHHHHHHHHHHcCc------eEEecccc-CCHHHH
Confidence 57799999999999999887776543322 23322222 33344444444444444332 22222111 111111
Q ss_pred HHHhhcCCCCCCCceeEeeccc
Q 008735 135 IKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 135 i~~~~~~~~l~~~~~iIiDE~H 156 (555)
+...+.......++++++|.+-
T Consensus 200 v~e~l~~~~~~~~d~vliDtaG 221 (328)
T 3e70_C 200 AYDAIQHAKARGIDVVLIDTAG 221 (328)
T ss_dssp HHHHHHHHHHHTCSEEEEEECC
T ss_pred HHHHHHHHHhccchhhHHhhcc
Confidence 2211111112457888999874
No 124
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.19 E-value=0.018 Score=53.35 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 47 EKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 47 Q~~~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+.+...+..++ .+++.||+|+|||+++..+....
T Consensus 32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344455555555 79999999999998887666443
No 125
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.17 E-value=0.0055 Score=62.37 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=34.6
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRV 107 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~ 107 (555)
..+..+|.|+.|||||+.+...+.. ..++++.|++.++..+.+++
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVlTpT~~aa~~l~~kl 204 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF-------EEDLILVPGRQAAEMIRRRA 204 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT-------TTCEEEESCHHHHHHHHHHH
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEEeCCHHHHHHHHHHh
Confidence 3458899999999999888555421 34688899999998777765
No 126
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.14 E-value=0.027 Score=51.34 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=23.0
Q ss_pred HHHHHHHHhcC--CeEEEEcCCCCchhhHHHHHHH
Q 008735 47 EKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 47 Q~~~i~~i~~~--~~~ii~apTGsGKT~~l~~~i~ 79 (555)
.+++...+..+ ..+++.||+|+|||+++..+..
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp HHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 33444444444 3599999999999988766554
No 127
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.12 E-value=0.023 Score=59.84 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+.+++.||+|+|||+++-.+....
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 689999999999998887776554
No 128
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.04 E-value=0.026 Score=51.12 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=18.0
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..+++|+.|||||+.+...+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999998766554443
No 129
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.02 E-value=0.016 Score=55.61 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=21.6
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.....+++.||+|+|||+++..+....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456789999999999998886665443
No 130
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.00 E-value=0.0049 Score=55.35 Aligned_cols=39 Identities=23% Similarity=0.177 Sum_probs=29.6
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCcc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 96 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~ 96 (555)
.++..++.||.||||||.+.+.+...... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccc
Confidence 47889999999999998777777655333 4567777776
No 131
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.90 E-value=0.032 Score=57.41 Aligned_cols=39 Identities=21% Similarity=0.073 Sum_probs=25.7
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 95 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P 95 (555)
...+++.||+|+|||+++..+.........+..++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 358999999999999888666544322222344555543
No 132
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.88 E-value=0.028 Score=54.64 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=21.5
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.|+.+.++||+||||||++..+....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999887776543
No 133
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.86 E-value=0.012 Score=54.32 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=31.3
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 98 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~ 98 (555)
.|+..+++|+-||||||.+...+..... .+.+++++.|...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~--~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT--TTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH--CCCeEEEEeecCC
Confidence 5788999999999999887777665532 3667888887753
No 134
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.81 E-value=0.077 Score=52.25 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 48 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 48 ~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+++...+..++.++|.||.|+|||+++..++...
T Consensus 22 ~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 22 RKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 3344445557899999999999999988876553
No 135
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.78 E-value=0.01 Score=64.40 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=51.2
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc--CCCcEEEEeCccHHHHHHHHHHHHHHhCC
Q 008735 42 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC--RDGKLIGVTQPRRVAAVTVAKRVAEESGV 113 (555)
Q Consensus 42 ~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~--~~~~~i~~~~P~r~l~~~~~~~~~~~~~~ 113 (555)
.+++.|.+++. ..+..++|.|+.|||||+.+..-+...... ....+|+++.+++.++.++.+++....+.
T Consensus 9 ~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 9 SLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 46788999997 346789999999999996654433222111 12357999999999999999998877653
No 136
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.71 E-value=0.057 Score=52.24 Aligned_cols=92 Identities=24% Similarity=0.245 Sum_probs=45.7
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEe--CccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 133 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~--~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 133 (555)
.++.+.++|++|+||||++..+....... +.+++++ -+.+..+..+...+....+..+ +. . ........
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~---~~---~-~~~~~p~~ 167 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPV---LE---V-MDGESPES 167 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---EE---C-CTTCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEE---EE---c-CCCCCHHH
Confidence 45688899999999998876666443322 2334333 3444444333333333333211 10 0 01111111
Q ss_pred hHHHhhcCCCCCCCceeEeeccc
Q 008735 134 RIKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 134 ~i~~~~~~~~l~~~~~iIiDE~H 156 (555)
.....+..-...++++|||||.-
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp 190 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAG 190 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCC
T ss_pred HHHHHHHHHHhCCCCEEEEeCCC
Confidence 11222222112568999999984
No 137
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.68 E-value=0.02 Score=57.46 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=29.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCccCCCC-CCHHHHhh-cccCCCChHHHHHHH
Q 008735 455 EKPSRASIIKSLEQLFLLGALTDDCK-LSDPVGHQ-MARLPLDPIYSKALI 503 (555)
Q Consensus 455 ~~p~~~~~~~al~~L~~~g~l~~~~~-~T~~lG~~-~~~~~~~~~~~~~l~ 503 (555)
+|.....+..+++.|...|+++.... -.. -|+. ..++.++|..-...+
T Consensus 328 ~~~~~~~~~~~l~~L~~~gli~~~~~~~g~-~g~~~~~~l~~~~~~i~~~l 377 (387)
T 2v1u_A 328 EHVTLRRVSGIISELDMLGIVKSRVVSRGR-YGKTREVSLDADRLAVENAL 377 (387)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECGG-GCEEEEEEECSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEeecCCC-CCceeEEEecCCHHHHHHHH
Confidence 45567888999999999999965211 011 2322 445667776554444
No 138
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.65 E-value=0.026 Score=60.35 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=47.1
Q ss_pred CcHHHHHHHHHHHhc--CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHH
Q 008735 42 PIASVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 106 (555)
Q Consensus 42 ~~~~~Q~~~i~~i~~--~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~ 106 (555)
.++.-|+++++.+.. ....+++|+-|.|||+++..++.... ..++++.|+...+....+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~-----~~~~vtAP~~~a~~~l~~~ 236 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA-----GRAIVTAPAKASTDVLAQF 236 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS-----SCEEEECSSCCSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH-----hCcEEECCCHHHHHHHHHH
Confidence 457789999999876 55789999999999999888887653 2368889998877655543
No 139
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.64 E-value=0.01 Score=61.20 Aligned_cols=92 Identities=20% Similarity=0.245 Sum_probs=46.8
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEe--CccHHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCCchh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 133 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~--~P~r~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 133 (555)
.|..+.++|++||||||++..+...... .++.|.+. -+.+..+......+....+ ++|..+.... ....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~------I~vV~Q~~~~-~p~~ 362 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNN------IPVIAQHTGA-DSAS 362 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHT------CCEECCSTTC-CHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcC------ceEEecccCc-CHHH
Confidence 3568999999999999988777644322 23345553 2334333222222222222 3444442221 1111
Q ss_pred hHHHhhcCCCCCCCceeEeeccc
Q 008735 134 RIKEALLDPYLSRYSAIIVDEAH 156 (555)
Q Consensus 134 ~i~~~~~~~~l~~~~~iIiDE~H 156 (555)
.+...+......+++++|||=+-
T Consensus 363 tV~e~l~~a~~~~~DvVLIDTaG 385 (503)
T 2yhs_A 363 VIFDAIQAAKARNIDVLIADTAG 385 (503)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCC
Confidence 22221211123568899999874
No 140
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.64 E-value=0.029 Score=54.53 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCchhhHHHHHHH
Q 008735 57 NDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+.++++.||+|+|||+++..+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999988765443
No 141
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.60 E-value=0.039 Score=54.80 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=21.4
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.|+.+.++||+||||||++..+....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 46689999999999999887776543
No 142
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.60 E-value=0.042 Score=55.18 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=27.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCccCCCC---CCHHHHh-hcccCCCChHHH
Q 008735 455 EKPSRASIIKSLEQLFLLGALTDDCK---LSDPVGH-QMARLPLDPIYS 499 (555)
Q Consensus 455 ~~p~~~~~~~al~~L~~~g~l~~~~~---~T~~lG~-~~~~~~~~~~~~ 499 (555)
.+.....+...++.|...|+|..... -.. .|+ ...++.+++..-
T Consensus 328 ~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~-~g~~~~~~l~~~~~~v 375 (389)
T 1fnn_A 328 RPRVHSQLWSYLNDLREKGIVETRQNKRGEGV-RGRTTLISIGTEPLDT 375 (389)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSEEEEC----------CEEEECCSSCHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEeeeccCCCC-CCceeEEEeCCCHHHH
Confidence 34567889999999999999965321 112 343 356677777544
No 143
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.56 E-value=0.018 Score=52.36 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=28.8
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHH
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 98 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~ 98 (555)
..|...+++||-||||||.+...+..... .+.+++++.|...
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~--~g~kvli~kp~~D 67 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIY--AKQKVVVFKPAID 67 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH--cCCceEEEEeccC
Confidence 46788999999999999866555544322 2456888888754
No 144
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.55 E-value=0.05 Score=54.94 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+.+++.||+|+|||+++..+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999888766544
No 145
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.55 E-value=0.026 Score=56.73 Aligned_cols=46 Identities=13% Similarity=0.008 Sum_probs=29.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCccCCCC-CCHHHHh-hcccCCCChHHHHH
Q 008735 455 EKPSRASIIKSLEQLFLLGALTDDCK-LSDPVGH-QMARLPLDPIYSKA 501 (555)
Q Consensus 455 ~~p~~~~~~~al~~L~~~g~l~~~~~-~T~~lG~-~~~~~~~~~~~~~~ 501 (555)
+|.....+.++++.|...|+|+.... -.. -|+ .+..+.+++..-..
T Consensus 316 ~~~~~~~~~~~l~~L~~~gli~~~~~~~g~-~g~~~~~~l~~~~~~v~~ 363 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFGIVKIRIINRGR-AGGVKKYALVEDKEKVLR 363 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEECCTT-TTCCEEEEEESSSHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEeccCCC-CCceEEEEecCCHHHHHH
Confidence 45577889999999999999965321 011 232 25566677765433
No 146
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.49 E-value=0.023 Score=55.70 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=20.2
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++.++++|++|+||||++..+....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999998876665443
No 147
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.45 E-value=0.027 Score=56.44 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..++|.||+|+|||+++..+....
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999998887766543
No 148
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.44 E-value=0.0081 Score=54.92 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=22.1
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+..|+.+.|+||+||||||++-.+.-.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999999999998776643
No 149
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.41 E-value=0.091 Score=52.39 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=22.7
Q ss_pred HHHHHhcCC---eEEEEcCCCCchhhHHHHHHHhc
Q 008735 50 LVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 50 ~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+...+..++ .+++.||+|+|||+++-.+....
T Consensus 28 L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp HHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334444454 58999999999998887665443
No 150
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.35 E-value=0.0093 Score=53.15 Aligned_cols=25 Identities=16% Similarity=0.394 Sum_probs=21.7
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.|+.++++||+||||||++-.+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999998777654
No 151
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.33 E-value=0.0087 Score=54.37 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=22.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.++||+||||||++..+.-.
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 357899999999999999998776643
No 152
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.28 E-value=0.02 Score=54.64 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..+++.||+|+|||+++..+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 58999999999999888666554
No 153
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.26 E-value=0.036 Score=53.88 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=21.7
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++.+.++||+||||||++..+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999887776544
No 154
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.24 E-value=0.007 Score=57.57 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.++|+|||||||||++..++-.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 578899999999999999988776643
No 155
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.22 E-value=0.0094 Score=55.00 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=22.6
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+..|+.+.|+||+||||||++-.+.-..
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998776543
No 156
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.20 E-value=0.0092 Score=54.15 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=20.1
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..|+.++++||+||||||++-.+.-.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35788999999999999998777643
No 157
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.08 E-value=0.025 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=20.6
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..+.+++.||+|+|||+++..+....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999998886665443
No 158
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.05 E-value=0.012 Score=58.99 Aligned_cols=34 Identities=32% Similarity=0.524 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 48 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 48 ~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+.+--.+..|+.++|+|||||||||++..++-..
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3344457799999999999999999998776544
No 159
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.00 E-value=0.0063 Score=53.80 Aligned_cols=22 Identities=27% Similarity=0.598 Sum_probs=19.8
Q ss_pred hcCCeEEEEcCCCCchhhHHHH
Q 008735 55 RKNDILIIVGETGSGKTTQLPQ 76 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~ 76 (555)
..|+.+.++||+||||||++-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4688999999999999999975
No 160
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.91 E-value=0.073 Score=51.90 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=22.7
Q ss_pred HHHHHHhcCC--eEEEEcCCCCchhhHHHHHHHh
Q 008735 49 RLVEEVRKND--ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 49 ~~i~~i~~~~--~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+...+..++ .+++.||+|+|||+++-.+...
T Consensus 36 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 36 RLKHYVKTGSMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp HHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3334445554 7999999999999887665543
No 161
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.91 E-value=0.064 Score=55.36 Aligned_cols=42 Identities=12% Similarity=0.217 Sum_probs=29.4
Q ss_pred HHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 52 EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 52 ~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
--+..|+.++|.|++|+|||+++..++....... +..+++..
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s 239 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFS 239 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEE
Confidence 3355789999999999999998888776554322 33455543
No 162
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.91 E-value=0.023 Score=56.69 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+.+++.||+|+|||+++..+....
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3579999999999998887666554
No 163
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.90 E-value=0.043 Score=53.27 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=22.1
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..++.+++.||+|+|||+++..+....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 457889999999999998887666544
No 164
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.90 E-value=0.11 Score=51.45 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.1
Q ss_pred eEEEEcCCCCchhhHHHHHHH
Q 008735 59 ILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~ 79 (555)
++++.||+|+||||++-.+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999988876655
No 165
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=94.84 E-value=0.078 Score=51.41 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEec
Q 008735 269 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT 348 (555)
Q Consensus 269 ~~~~~~~~~~~~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT 348 (555)
.+..++..... .+.++|||+...+...-+.+++... ++...-+.|.....+++ ..+....+.+.|
T Consensus 113 ~L~~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~---------~~~y~RlDG~~~~~~~k-----~~~~~~~i~Llt 177 (328)
T 3hgt_A 113 VLRDLINLVQE-YETETAIVCRPGRTMDLLEALLLGN---------KVHIKRYDGHSIKSAAA-----ANDFSCTVHLFS 177 (328)
T ss_dssp HHHHHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTS---------SCEEEESSSCCC------------CCSEEEEEEE
T ss_pred HHHHHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcC---------CCceEeCCCCchhhhhh-----cccCCceEEEEE
Confidence 34444444433 3678999999999888887777653 88888888885543322 123456666667
Q ss_pred Cccccccc-----cCCeEEEEeCCcccceeecCCCCccccceeecCHHhHHHHhcccCCCC-----CCEEEEccChhhHh
Q 008735 349 NIAETSVT-----IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-----PGKCFRLYPENEFD 418 (555)
Q Consensus 349 ~~~e~Gvd-----ip~v~~VId~g~~~~~~yd~~~~~~~l~~~p~s~~~~~Qr~GRaGR~~-----~G~~~~l~~~~~~~ 418 (555)
....-|+| .-..+.||- ||+..+ .....+|.+-|+.|.| +=.+|||.+....+
T Consensus 178 sag~~gin~~~~nl~~aD~VI~--------~DsdwN---------p~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 178 SEGINFTKYPIKSKARFDMLIC--------LDTTVD---------TSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp SSCCCTTTSCCCCCSCCSEEEE--------CSTTCC---------TTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCCCCCcCcccccCCCCCEEEE--------ECCCCC---------CCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 76666776 556777776 886543 2233566555555553 44689998766554
Q ss_pred c
Q 008735 419 K 419 (555)
Q Consensus 419 ~ 419 (555)
.
T Consensus 241 h 241 (328)
T 3hgt_A 241 H 241 (328)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.82 E-value=0.025 Score=55.61 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+.+++.||+|+|||+++..+....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4679999999999998887665543
No 167
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.80 E-value=0.01 Score=53.27 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=22.7
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+..|+.++++||+||||||++..+.-.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3567889999999999999998776543
No 168
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.77 E-value=0.015 Score=52.74 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|..++++||+||||||++..+.-.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 567899999999999999998776543
No 169
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.77 E-value=0.02 Score=59.95 Aligned_cols=44 Identities=34% Similarity=0.443 Sum_probs=30.0
Q ss_pred HHhhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 35 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 35 ~~~~~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+...+.++.. .-..+.-.+..|.+++|+|||||||||++-.++-
T Consensus 239 l~~~G~~~~~-~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 239 LIEKGTVPSG-VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp HHHTTSSCHH-HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGG
T ss_pred HHhcCCCCHH-HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3334444432 2233445678899999999999999999866543
No 170
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.76 E-value=0.017 Score=53.30 Aligned_cols=29 Identities=17% Similarity=0.429 Sum_probs=22.5
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
....|+.++|+||+||||||++-.+.-..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 35689999999999999999987766543
No 171
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.75 E-value=0.14 Score=50.08 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=21.2
Q ss_pred HHHHHHhcCC---eEEEEcCCCCchhhHHHHHHHh
Q 008735 49 RLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 49 ~~i~~i~~~~---~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+...+..++ .+++.||+|+|||+++..+...
T Consensus 37 ~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 37 TFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp HHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 3334444443 5677888999999888666544
No 172
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.73 E-value=0.094 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..+++.||+|+|||+++..+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 58999999999999888666444
No 173
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.71 E-value=0.24 Score=48.66 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..++|.||.|+|||+++..+....
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 699999999999999988776553
No 174
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.70 E-value=0.012 Score=55.06 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=21.8
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|+||+||||||++-.+.
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578999999999999999987665
No 175
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.69 E-value=0.018 Score=52.62 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=22.4
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..|+.++++||+||||||++..++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 368899999999999999987776543
No 176
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.67 E-value=0.025 Score=49.23 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=23.3
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..|+.+.+.||+||||||++..+.-..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 688999999999999999987776544
No 177
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.66 E-value=0.016 Score=51.85 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
++.++++||+||||||++..+.-.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999998777644
No 178
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.59 E-value=0.23 Score=48.84 Aligned_cols=37 Identities=14% Similarity=0.058 Sum_probs=25.5
Q ss_pred HHHHHHHHH----HHhcCC---eEEEEcCCCCchhhHHHHHHHh
Q 008735 44 ASVEKRLVE----EVRKND---ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 44 ~~~Q~~~i~----~i~~~~---~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+++|++++. .+.+|+ .+++.||.|+|||+++..++..
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHH
Confidence 445555544 445555 4899999999999887666544
No 179
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.58 E-value=0.014 Score=54.75 Aligned_cols=27 Identities=33% Similarity=0.644 Sum_probs=23.1
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
-+..|+.+.+.||+||||||++-.++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 356789999999999999999887763
No 180
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.53 E-value=0.022 Score=51.49 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=22.5
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..|+.++++||+|+||||++-.++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 368899999999999999987776443
No 181
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.50 E-value=0.045 Score=55.67 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=25.3
Q ss_pred HHHHHHHH--hcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 47 EKRLVEEV--RKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 47 Q~~~i~~i--~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+.+++..+ ..+..++|+|||||||||++-.++-..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 33444443 356789999999999999987766543
No 182
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.49 E-value=0.038 Score=60.20 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccc--cCCCcEEEEeCccHHHHHHHHHHHHHHhCC
Q 008735 42 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAEESGV 113 (555)
Q Consensus 42 ~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~--~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~ 113 (555)
.+++.|.+++.. .+..++|.|+.|||||+.+..-+..... ......|+++..++.++.++.+++....+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 357889999875 4678999999999999665433321111 112457889999999999999998877653
No 183
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.38 E-value=0.029 Score=65.82 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|+||+||||||++..++-..
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 4579999999999999999997776443
No 184
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.35 E-value=0.015 Score=53.82 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=21.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|+||+||||||++-.+.
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999987765
No 185
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.35 E-value=0.029 Score=57.72 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=23.6
Q ss_pred HHHHHhcCC--eEEEEcCCCCchhhHHHHHHHhc
Q 008735 50 LVEEVRKND--ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 50 ~i~~i~~~~--~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+...+..++ .+++.||+|+|||+++..+....
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 335555565 59999999999998886665443
No 186
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.34 E-value=0.015 Score=55.59 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=22.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++..+.-
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 45789999999999999999977653
No 187
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.32 E-value=0.014 Score=54.20 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=18.5
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
.+..|+.+.++||+||||||++..+.
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999987766
No 188
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.30 E-value=0.015 Score=54.46 Aligned_cols=26 Identities=27% Similarity=0.615 Sum_probs=22.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999977653
No 189
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.23 E-value=0.067 Score=51.74 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEE--eCccHHHHHHHHHHHHHHhC
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGV--TQPRRVAAVTVAKRVAEESG 112 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~--~~P~r~l~~~~~~~~~~~~~ 112 (555)
++.++++|++|+||||++..+....... +.++++ .-+.+..+..+...+....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~ 153 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIG 153 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCC
Confidence 4578889999999998877766544322 233333 33455555444444444333
No 190
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.22 E-value=0.034 Score=47.46 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=21.8
Q ss_pred HHHhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 52 EEVRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 52 ~~i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
.....+.++++.||+|+|||+++..+..
T Consensus 19 ~~a~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 19 QLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp HHTTCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred HHhCCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3345778999999999999977755543
No 191
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.20 E-value=0.15 Score=52.44 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=28.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
+..|..++|.|++|+|||+++..++....... +..++++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~s 236 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYS 236 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEE
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEE
Confidence 45678999999999999988888776654322 33455543
No 192
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.18 E-value=0.017 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=21.8
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|.||+||||||++-.+.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999987765
No 193
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.12 E-value=0.062 Score=52.24 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
++++.||+|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 5999999999999887655443
No 194
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.10 E-value=0.017 Score=53.71 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=22.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999877653
No 195
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.06 E-value=0.017 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=22.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 45789999999999999999877653
No 196
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.06 E-value=0.021 Score=54.45 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999977664
No 197
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.04 E-value=0.017 Score=54.32 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=22.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999877653
No 198
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.03 E-value=0.02 Score=54.38 Aligned_cols=25 Identities=40% Similarity=0.636 Sum_probs=21.8
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|+||+||||||++-.+.
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999987765
No 199
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.02 E-value=0.057 Score=59.30 Aligned_cols=69 Identities=22% Similarity=0.130 Sum_probs=49.6
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccc--cCCCcEEEEeCccHHHHHHHHHHHHHHhC
Q 008735 42 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAEESG 112 (555)
Q Consensus 42 ~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~--~~~~~~i~~~~P~r~l~~~~~~~~~~~~~ 112 (555)
.+++.|.+++.. .+..++|.|+.|||||+.+-.-+..... ......|+++..++.++.++.+++....+
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 467889999876 4568899999999999655433322111 11235688899999999999888877654
No 200
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.01 E-value=0.021 Score=53.88 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999977654
No 201
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.00 E-value=0.025 Score=51.62 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=20.5
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
..|..+.|+||+||||||++..+.-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999998865543
No 202
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.00 E-value=0.15 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
...+++.||+|+|||+++..+...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999888666543
No 203
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.98 E-value=0.02 Score=53.61 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=22.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|.||+||||||++-.+.-
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999877653
No 204
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.98 E-value=0.02 Score=54.24 Aligned_cols=25 Identities=40% Similarity=0.686 Sum_probs=21.8
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|+||+||||||++-.+.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999997765
No 205
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.97 E-value=0.02 Score=57.44 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=23.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|..++|+|||||||||++..++...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5678899999999999999987776543
No 206
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.94 E-value=0.022 Score=54.17 Aligned_cols=25 Identities=32% Similarity=0.715 Sum_probs=21.8
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|+||+||||||++-.+.
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHH
Confidence 3578999999999999999987765
No 207
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.94 E-value=0.065 Score=62.55 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=50.8
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhcccc----CCCcEEEEeCccHHHHHHHHHHHHHHh
Q 008735 40 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC----RDGKLIGVTQPRRVAAVTVAKRVAEES 111 (555)
Q Consensus 40 ~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~----~~~~~i~~~~P~r~l~~~~~~~~~~~~ 111 (555)
....++-|.+++..- +++++|.|.-|||||+.+..-+...... .....|+++.+++.++..+.+++....
T Consensus 8 ~~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp --CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 356788899998764 8899999999999997654433222111 134579999999999999988876644
No 208
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.93 E-value=0.033 Score=50.37 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=22.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..++.++++|++||||||++..+....
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4568899999999999999987776543
No 209
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.91 E-value=0.034 Score=47.35 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCchhhHHH
Q 008735 48 KRLVEEVRKNDILIIVGETGSGKTTQLP 75 (555)
Q Consensus 48 ~~~i~~i~~~~~~ii~apTGsGKT~~l~ 75 (555)
+.+......+..+++.||+|+|||+++.
T Consensus 18 ~~~~~~~~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 18 REVEAAAKRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHHHHHHTCSSCEEEEEETTCCHHHHHG
T ss_pred HHHHHHhCCCCcEEEECCCCccHHHHHH
Confidence 3344445678899999999999997763
No 210
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.89 E-value=0.022 Score=53.85 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=21.8
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|.||+||||||++-.+.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999987765
No 211
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.89 E-value=0.12 Score=50.21 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=22.4
Q ss_pred HHHHHHhcCC--eEEEEcCCCCchhhHHHHHHHh
Q 008735 49 RLVEEVRKND--ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 49 ~~i~~i~~~~--~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+...+..++ ++++.||+|+|||+++..+...
T Consensus 32 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 32 RLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp HHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3444455543 4999999999999887665543
No 212
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.87 E-value=0.02 Score=54.38 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999877654
No 213
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.81 E-value=0.031 Score=54.16 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=24.1
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+..|+.+.|+||+||||||++..++-..
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 35689999999999999999987776443
No 214
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.80 E-value=0.02 Score=53.74 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999877653
No 215
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.78 E-value=0.021 Score=54.81 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=21.8
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|+||+||||||++-.+.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4578999999999999999987765
No 216
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.78 E-value=0.024 Score=53.42 Aligned_cols=26 Identities=42% Similarity=0.645 Sum_probs=22.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 35789999999999999999877653
No 217
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.76 E-value=0.43 Score=48.41 Aligned_cols=54 Identities=26% Similarity=0.311 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEE--eCccHHHHHHHHHHHHHHhC
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGV--TQPRRVAAVTVAKRVAEESG 112 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~--~~P~r~l~~~~~~~~~~~~~ 112 (555)
++.++++|++|+||||++..+....... +.++++ .-+.+..+.++...+....+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~~r~aa~~qL~~~~~~~g 153 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVG 153 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccccCchhHHHHHHhcccCC
Confidence 4578889999999998877666544322 333433 33555555544344444333
No 218
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.76 E-value=0.037 Score=50.06 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=21.4
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..|+.++++||+||||||++..+...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999998776543
No 219
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.74 E-value=0.022 Score=54.48 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++-.+.-
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999977653
No 220
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.73 E-value=0.021 Score=52.79 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++..++..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999887653
No 221
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.73 E-value=0.038 Score=64.87 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=22.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+|+|||||||++..+..
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhc
Confidence 45789999999999999999877664
No 222
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.66 E-value=0.022 Score=53.76 Aligned_cols=26 Identities=42% Similarity=0.676 Sum_probs=22.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|.||+||||||++-.+.-
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999877653
No 223
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.65 E-value=0.032 Score=51.05 Aligned_cols=26 Identities=27% Similarity=0.165 Sum_probs=22.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+++.||+||||||++.+++.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44678999999999999999888776
No 224
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.58 E-value=0.04 Score=48.94 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+.++||+||||||++-.+.-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999998777643
No 225
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.57 E-value=0.027 Score=53.65 Aligned_cols=25 Identities=36% Similarity=0.646 Sum_probs=21.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|+||+||||||++-.+.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4578999999999999999987764
No 226
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.47 E-value=0.055 Score=50.34 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+++.||+||||||++..++..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 346789999999999999998888764
No 227
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.46 E-value=0.036 Score=50.55 Aligned_cols=26 Identities=35% Similarity=0.287 Sum_probs=20.8
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..+..+.|+||+||||||++..+.-.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999998666543
No 228
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.44 E-value=0.02 Score=55.68 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.0
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.|+||+||||||++..+.-
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHc
Confidence 35689999999999999999976653
No 229
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.43 E-value=0.03 Score=55.60 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=22.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.+.||+||||||++..+.-
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhc
Confidence 35789999999999999999987763
No 230
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.35 E-value=0.089 Score=46.46 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=24.3
Q ss_pred HHHHHHHHhc--CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 47 EKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 47 Q~~~i~~i~~--~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+++...+.. ...+++.||+|+|||+++..++..
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3444455543 368999999999999887666544
No 231
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.32 E-value=0.044 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
|+.+.++||+||||||++..++-..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 5678999999999999887766543
No 232
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.31 E-value=0.045 Score=48.02 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=21.1
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+..++++||+||||||++..+....
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999987766543
No 233
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.24 E-value=0.046 Score=49.60 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=22.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..++.++++||+||||||++..+....
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3467899999999999999887776543
No 234
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.23 E-value=0.12 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+.|.||+||||||++..+...
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999998665433
No 235
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.20 E-value=0.036 Score=49.57 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCCchhhHHHHHHH
Q 008735 57 NDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
|+.++++||+||||||++..+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 45789999999999999887754
No 236
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.15 E-value=0.05 Score=52.56 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=25.2
Q ss_pred HHHhcCCeEEEEcCCCCchhhHHHHHHHhcc
Q 008735 52 EEVRKNDILIIVGETGSGKTTQLPQFLFHAG 82 (555)
Q Consensus 52 ~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~ 82 (555)
-.+..|+.++|.||+|+||||++.+++....
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999998877775543
No 237
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.12 E-value=0.036 Score=55.00 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=22.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.+.||+||||||++-.+.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578999999999999999998776
No 238
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.10 E-value=0.037 Score=55.32 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=22.6
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.+.||+||||||++..+.-
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHc
Confidence 35789999999999999999987763
No 239
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.06 E-value=0.031 Score=53.88 Aligned_cols=25 Identities=32% Similarity=0.671 Sum_probs=21.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|+||+||||||++-.+.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3478999999999999999987765
No 240
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.01 E-value=0.047 Score=48.04 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=20.1
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
.++.++++||+||||||++..+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999998876654
No 241
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.00 E-value=0.094 Score=51.58 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=30.1
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
-+..|..++|.|++|+|||+++..++..... .+..++++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fS 81 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFS 81 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEe
Confidence 3567899999999999999988887766543 345566654
No 242
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.99 E-value=0.039 Score=54.84 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.+.||+||||||++..+.-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHC
Confidence 35789999999999999999987763
No 243
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.98 E-value=0.062 Score=52.38 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=21.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|..+.|.||+||||||++-.+.-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45678999999999999999866553
No 244
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.92 E-value=0.19 Score=52.16 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=20.6
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
....+++.||+|+|||+++..+....
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 45689999999999998876665443
No 245
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.90 E-value=0.041 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.5
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
.. +.+.+.||+||||||++-.+.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 45 7899999999999999977663
No 246
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.89 E-value=0.37 Score=46.70 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=20.5
Q ss_pred HHHHhcCC--eEEEEcCCCCchhhHHHHHH
Q 008735 51 VEEVRKND--ILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 51 i~~i~~~~--~~ii~apTGsGKT~~l~~~i 78 (555)
...+.+++ ..++.||.|+|||+.+..+.
T Consensus 10 ~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la 39 (305)
T 2gno_A 10 KRIIEKSEGISILINGEDLSYPREVSLELP 39 (305)
T ss_dssp HHHHHTCSSEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHHCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 34455554 78999999999997775544
No 247
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.88 E-value=0.042 Score=54.68 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=22.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.+.||+||||||++-.+.-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhc
Confidence 35789999999999999999988763
No 248
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.77 E-value=0.057 Score=52.24 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=19.4
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++.++|+||||||||+++..++..
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHh
Confidence 3457899999999999887665543
No 249
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.74 E-value=0.055 Score=48.91 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=22.0
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
...|..++++||+||||||++..+...
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999988666543
No 250
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.72 E-value=0.045 Score=54.65 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=22.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.+.||+||||||++-.+.-
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHc
Confidence 35789999999999999999987763
No 251
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.71 E-value=0.066 Score=47.65 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=20.5
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
++..++++|+.||||||++..+...
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999998776653
No 252
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.71 E-value=0.049 Score=51.04 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=21.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|..+.|+||+||||||++-.+.-
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45778899999999999999876654
No 253
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.71 E-value=0.081 Score=46.60 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=23.9
Q ss_pred HHHHHHHhc--CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 48 KRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 48 ~~~i~~i~~--~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+++...+.. ...+++.||+|+|||+++..+...
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 334444433 568999999999999888766654
No 254
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.67 E-value=0.047 Score=54.25 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.0
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++..+.-.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 457899999999999999998777643
No 255
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.67 E-value=0.036 Score=54.86 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.+.||+||||||++-.+.-
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHc
Confidence 35789999999999999999987763
No 256
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.62 E-value=0.04 Score=52.34 Aligned_cols=25 Identities=44% Similarity=0.554 Sum_probs=21.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+. |+.+.|.||+||||||++-.+.-
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhC
Confidence 45 88999999999999999877653
No 257
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.62 E-value=0.046 Score=54.67 Aligned_cols=25 Identities=36% Similarity=0.708 Sum_probs=22.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.+.||+||||||++-.+.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHH
Confidence 3578999999999999999998776
No 258
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.61 E-value=0.045 Score=55.02 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=22.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.+.||+||||||++..+.-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhC
Confidence 45799999999999999999977763
No 259
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.56 E-value=0.12 Score=48.15 Aligned_cols=27 Identities=30% Similarity=0.644 Sum_probs=22.6
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..|..++|.||+|||||+++.+++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999877776554
No 260
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.53 E-value=0.058 Score=52.80 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=19.1
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
.++.++|+||||||||++...++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999988755543
No 261
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.53 E-value=0.16 Score=55.98 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=66.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecC-ccccccccCCe
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-IAETSVTIPGI 360 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-~~e~Gvdip~v 360 (555)
+.+++|.+||+.-+.+.++.+.+.+... ++.+..+||+++..+|..+.+.+.+|..+|+|+|. .+...+++.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~-----gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKF-----NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCS-----SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhc-----CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCC
Confidence 5789999999999999999988876432 57899999999999999999989999999999996 34456788888
Q ss_pred EEEE
Q 008735 361 KYVI 364 (555)
Q Consensus 361 ~~VI 364 (555)
.+||
T Consensus 492 ~lVV 495 (780)
T 1gm5_A 492 GLVI 495 (780)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 8887
No 262
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.42 E-value=0.064 Score=48.18 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=19.9
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++-++|+||||+|||+++..++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3577899999999999888666543
No 263
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.37 E-value=0.23 Score=55.64 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=23.7
Q ss_pred HHHHHHHhc--CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 48 KRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 48 ~~~i~~i~~--~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..+++.+.. ..+++++||+|+|||+++..+...
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 344444443 357999999999999888766654
No 264
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.28 E-value=0.087 Score=46.71 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+.++++|++||||||+...+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999887766543
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.24 E-value=0.08 Score=46.59 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=20.9
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+..++++|+.||||||+...+....
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999887765543
No 266
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.22 E-value=0.082 Score=49.51 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=21.5
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+..++|+||+||||||++-.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999997776443
No 267
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.19 E-value=0.084 Score=47.13 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+-++|+||+|+||||++-.++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999987766543
No 268
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.17 E-value=0.18 Score=53.04 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=24.7
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhcc
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHAG 82 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~~ 82 (555)
.+..|..++|.||+||||||++.+++....
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999888775543
No 269
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.08 E-value=0.037 Score=54.95 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.+.||+||||||++..+.-
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 35789999999999999999987763
No 270
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.08 E-value=0.069 Score=50.38 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=17.8
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++|+|||||||||+...+...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5789999999999988665443
No 271
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.98 E-value=0.084 Score=46.04 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCchhhHHHHH
Q 008735 58 DILIIVGETGSGKTTQLPQF 77 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~ 77 (555)
..++++||+||||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999998777
No 272
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.96 E-value=0.071 Score=49.76 Aligned_cols=27 Identities=33% Similarity=0.666 Sum_probs=22.7
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..|..++|.|++|+|||+++.+++.+.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 357899999999999998888877654
No 273
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.91 E-value=0.097 Score=46.29 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..+|+||+||||||++..+...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999988776543
No 274
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.88 E-value=0.27 Score=53.25 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=52.6
Q ss_pred cCCCcHHHHHHHHHHH----hcCC-eEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHHHHHHHHHHHHhCC
Q 008735 39 KSLPIASVEKRLVEEV----RKND-ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGV 113 (555)
Q Consensus 39 ~~l~~~~~Q~~~i~~i----~~~~-~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~~~~~~~~~ 113 (555)
..++|+.+|.+.+..+ ..|. ...+.|-||||||+++..++... ++.++++.|....+.+.+..+..++..
T Consensus 9 ~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~-----~~~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 9 SKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV-----NKPTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp CSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH-----CCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh-----CCCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 3567778887776654 4453 57788999999997776655443 235889999999999999999888653
No 275
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.87 E-value=0.07 Score=47.35 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=21.3
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.|..++++|+.||||||+...+....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999987776443
No 276
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.84 E-value=0.079 Score=48.59 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=23.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+.+.+.+++.||+||||+|++..+....
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556789999999999999998877655
No 277
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.73 E-value=0.096 Score=45.65 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++++|+.||||||++..+....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999987766543
No 278
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.71 E-value=0.11 Score=53.15 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+++++|++|+||||++..+....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999998877666543
No 279
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.68 E-value=0.11 Score=44.64 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=17.9
Q ss_pred CeEEEEcCCCCchhhHHHHHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~ 79 (555)
...+|+||||||||+++..+.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999988766543
No 280
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.64 E-value=0.11 Score=46.59 Aligned_cols=29 Identities=38% Similarity=0.603 Sum_probs=23.3
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+..+..++++|+.||||||++..+....
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44567899999999999999987776543
No 281
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.57 E-value=0.11 Score=50.90 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+.++|+|++||||||++..++-.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 46899999999999999877654
No 282
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.57 E-value=0.12 Score=46.04 Aligned_cols=28 Identities=36% Similarity=0.612 Sum_probs=22.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
...+..++++|+.||||||++..+....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999987776543
No 283
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.52 E-value=0.23 Score=50.71 Aligned_cols=54 Identities=26% Similarity=0.295 Sum_probs=31.6
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEe--CccHHHHHHHHHHHHHHhC
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESG 112 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~--~P~r~l~~~~~~~~~~~~~ 112 (555)
++++++|++|+||||++..++...... .+.+++++ -|.+..+.+....+....+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~kVllvd~D~~r~~a~~ql~~~~~~~~ 156 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREK-HKKKVLVVSADVYRPAAIKQLETLAEQVG 156 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEECCCSSTTHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEEecCCCCccHHHHHHhhcccCC
Confidence 478889999999998876666544322 13344433 3555555544443444333
No 284
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.52 E-value=0.07 Score=48.41 Aligned_cols=27 Identities=37% Similarity=0.254 Sum_probs=21.8
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
.+..+..+.|+|++||||||++..+..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677899999999999998866643
No 285
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.51 E-value=0.061 Score=47.34 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+.+.|+|++||||||++..++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999988777644
No 286
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.47 E-value=0.11 Score=48.96 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.4
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..+..+.|+||+||||||++..+....
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999987776544
No 287
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.43 E-value=0.074 Score=50.91 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=24.0
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
-+..|+.++|.||+||||||++.+++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988777753
No 288
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.42 E-value=0.19 Score=48.80 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
++++++.||+|+|||+++..+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999998776655443
No 289
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.37 E-value=0.11 Score=45.88 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=21.4
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..++.++++|++||||||++..+...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 45678999999999999988766544
No 290
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.34 E-value=0.13 Score=47.42 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=21.1
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.....++++|++||||||++..+....
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999987776544
No 291
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.31 E-value=0.1 Score=50.29 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=18.4
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+.++|+||||||||+++..+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46889999999999888665544
No 292
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.28 E-value=0.16 Score=45.91 Aligned_cols=24 Identities=38% Similarity=0.231 Sum_probs=19.7
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
.+..+.|+|++||||||++..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999998866553
No 293
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.27 E-value=0.12 Score=45.86 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=20.9
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+..++++|+.||||||+...+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999988766544
No 294
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.26 E-value=0.12 Score=47.55 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..+.|+||+||||||++..+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999987776443
No 295
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.24 E-value=0.11 Score=45.90 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=20.1
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
.|..++++|+.||||||++..+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999998866543
No 296
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.19 E-value=0.14 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+.+++.||+|+||||++-.+....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 689999999999999987665443
No 297
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.10 E-value=1.3 Score=45.90 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=29.8
Q ss_pred eEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC--ccHHHHHHHHHHHHHH
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEE 110 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~--P~r~l~~~~~~~~~~~ 110 (555)
.++++|++|+||||++..++...... +.+++++. |.+..+....+.....
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~--G~kVllVd~D~~r~aa~~qL~~~~~~ 154 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRK--GWKTCLICADTFRAGAFDQLKQNATK 154 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEeccccchhHHHHHHHHhhc
Confidence 78899999999998887776544322 33344433 4455444433333333
No 298
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.00 E-value=0.14 Score=46.16 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=21.3
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+..++++|+.||||||++..+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999777654
No 299
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.00 E-value=0.091 Score=54.13 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=25.1
Q ss_pred HHHHHhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 50 LVEEVRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 50 ~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+--.+..|+.+.|+||+||||||++-.++-.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4444668999999999999999998776543
No 300
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.98 E-value=0.085 Score=55.58 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=22.9
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
.+..|+.++|+||+||||||++.++++
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll 61 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLY 61 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 445789999999999999999988643
No 301
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.97 E-value=0.15 Score=51.41 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=21.9
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.|..+.|.||+||||||++.+++...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 56899999999999999998766443
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.94 E-value=0.13 Score=45.26 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCchhhHHHHHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~ 79 (555)
..++++|++||||||++..+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3688999999999999877654
No 303
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.92 E-value=0.14 Score=51.55 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=29.9
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 98 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~ 98 (555)
.+.+++|+||||||||+++-.++..... .+..++++-|...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~--~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM--QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH--CCCEEEEEeCCcC
Confidence 5678999999999999888776655432 2445777777643
No 304
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.81 E-value=0.12 Score=46.03 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=19.9
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+..++++|++||||||+...+...
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999998766544
No 305
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.80 E-value=0.14 Score=46.54 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=22.9
Q ss_pred HHHhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 52 EEVRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 52 ~~i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
..+..+..++++|++||||||++..+..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4456788999999999999998876654
No 306
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.80 E-value=0.12 Score=46.63 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
...++++|+.||||||++..+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999998776544
No 307
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.75 E-value=0.12 Score=46.03 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=20.5
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+..++++|+.||||||++..+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999998776544
No 308
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.67 E-value=0.2 Score=48.69 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=21.3
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..+..+.|+||+||||||++-.+.-.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999998766543
No 309
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.66 E-value=0.14 Score=50.68 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.5
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.|+.+.|.||+||||||++.+++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999988887664
No 310
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.65 E-value=0.099 Score=48.40 Aligned_cols=24 Identities=42% Similarity=0.546 Sum_probs=20.1
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHH
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
..|..+.+.|++||||||++..+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 357789999999999999886654
No 311
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.48 E-value=0.23 Score=50.27 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchhhHHHHHHH
Q 008735 59 ILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~ 79 (555)
.+.++||+|+||||++-.+.-
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 999999999999999977654
No 312
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.47 E-value=0.15 Score=46.25 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchhhHHHHHHHhcc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHAG 82 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~~ 82 (555)
.+++.||+||||+|++..+....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478899999999999988876653
No 313
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.45 E-value=0.19 Score=46.88 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=21.3
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
....++++||.||||||++..+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999987776543
No 314
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.34 E-value=0.2 Score=47.29 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=21.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
...+..+++.||+|+|||+++..+...
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 346789999999999999777665544
No 315
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.26 E-value=0.14 Score=48.74 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
++.++||+||||||++-.+.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999776643
No 316
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.22 E-value=0.14 Score=46.39 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=21.7
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+..+++.|+.||||||++..+....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999998776554
No 317
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.21 E-value=0.15 Score=45.24 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=20.8
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+..++++|+.||||||++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999988776544
No 318
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.19 E-value=0.14 Score=61.61 Aligned_cols=39 Identities=31% Similarity=0.303 Sum_probs=29.2
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCcc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 96 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~ 96 (555)
.++++++.||+|+|||+++..++.+... .+.+++++...
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAE 1464 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEcc
Confidence 4899999999999999888777766542 34456666544
No 319
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.09 E-value=0.12 Score=55.08 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.++||+||||||++..+.-.
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999776643
No 320
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.07 E-value=0.2 Score=49.45 Aligned_cols=39 Identities=23% Similarity=0.131 Sum_probs=27.6
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccC----CCcEEEEeC
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCR----DGKLIGVTQ 94 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~----~~~~i~~~~ 94 (555)
.|..++|.||+|||||+++..++....... .+..++++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 468999999999999998888877643211 234555554
No 321
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.97 E-value=0.18 Score=49.10 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=18.4
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+.++|+|||||||||+...+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999887655543
No 322
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.91 E-value=0.24 Score=47.89 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=23.8
Q ss_pred HHHHhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 51 VEEVRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 51 i~~i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..+..|+.+.+.||+|+||||++-.+.
T Consensus 159 L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 159 LVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 3445678999999999999999998877
No 323
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.91 E-value=0.28 Score=48.32 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=24.2
Q ss_pred HHHHHHhcCCe--EEEEcCCCCchhhHHHHHHHh
Q 008735 49 RLVEEVRKNDI--LIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 49 ~~i~~i~~~~~--~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+...+..|+. +++.||+|+||||++-.+...
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44455667765 999999999999888666543
No 324
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.89 E-value=0.16 Score=49.78 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..++|+|||||||||+...+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 47899999999999888655543
No 325
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.87 E-value=0.65 Score=46.11 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.9
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
....+++.||+|+|||+++..+....
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999998776665544
No 326
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.86 E-value=0.19 Score=45.93 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=21.3
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+..+++.|+.||||||+...+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999987776544
No 327
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.85 E-value=0.13 Score=54.17 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.8
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+..|+.+.++||+||||||++-.+.-.
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999777643
No 328
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.83 E-value=0.19 Score=47.19 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
|+.++++|++||||||+...+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999987776543
No 329
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.79 E-value=0.15 Score=48.95 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..++++||+||||||++..+...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999998776544
No 330
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.79 E-value=0.18 Score=51.73 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=30.6
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccHHHH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAA 100 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r~l~ 100 (555)
.+.+++|.|+||||||+.+..++..... .+..++++-|.....
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~--~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLL--RGDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHH--TTCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEeCCCchh
Confidence 4678999999999999876555443321 245788888887664
No 331
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.79 E-value=0.32 Score=42.76 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..++++|++||||||++..++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57899999999999988777654
No 332
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.78 E-value=0.17 Score=50.46 Aligned_cols=21 Identities=29% Similarity=0.631 Sum_probs=17.7
Q ss_pred eEEEEcCCCCchhhHHHHHHH
Q 008735 59 ILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~ 79 (555)
.++|+|||||||||++..+.+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999866553
No 333
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=89.73 E-value=0.23 Score=48.65 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 45 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 45 ~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
...+.+...+..+.++++.||+|+|||+++..+....
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4445566667788999999999999998876665443
No 334
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=89.73 E-value=0.3 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=21.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..+.+++|.|+||||||+++-.++.
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cccCceEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999988777664
No 335
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.69 E-value=0.19 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+++.|+.||||||++..+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999987776544
No 336
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.62 E-value=0.19 Score=45.67 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++++||.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999987775544
No 337
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.60 E-value=0.19 Score=45.27 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhhHHHHHHH
Q 008735 59 ILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~ 79 (555)
.+.|+|++||||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999998876654
No 338
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.57 E-value=0.2 Score=45.37 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.2
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+..++++|+.||||||++..+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999998777644
No 339
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.53 E-value=0.21 Score=45.42 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++++||.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999987776544
No 340
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.50 E-value=0.12 Score=55.26 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..|+.+.++||+||||||++..+.-
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 35789999999999999999977653
No 341
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.49 E-value=0.14 Score=50.74 Aligned_cols=38 Identities=26% Similarity=0.292 Sum_probs=27.4
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 95 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P 95 (555)
.|..++|.||+||||||++..++..... .+..++++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~ 97 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDA 97 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEec
Confidence 4789999999999999988887765432 2334555543
No 342
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.46 E-value=0.26 Score=48.77 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=22.8
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
....|+.+.++||+|+||||++-.++-
T Consensus 211 ~~~~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 211 EALTGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HHHTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred HhcCCCEEEEECCCCccHHHHHHHHhc
Confidence 345789999999999999999977653
No 343
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.44 E-value=0.19 Score=46.12 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=21.1
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
....+++.|+.||||||+...+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999987776544
No 344
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.39 E-value=0.19 Score=44.55 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++++|+.||||||++..+....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999987766543
No 345
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.39 E-value=0.33 Score=45.51 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+.+++.||+|+|||+++..+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 467999999999999888666544
No 346
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.38 E-value=0.23 Score=43.10 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
++++++|+.||||||+...+....
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999887765543
No 347
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.37 E-value=0.3 Score=46.94 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=21.1
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++.+++.||+|+|||+++..+....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 36799999999999998887665543
No 348
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.35 E-value=0.33 Score=46.71 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
...+++.||+|+|||+++..+....
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999998886665443
No 349
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.35 E-value=0.12 Score=55.37 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=22.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.++||+||||||++..+.-.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 457899999999999999998766533
No 350
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.35 E-value=0.39 Score=44.35 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.2
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.|..+++.|+.||||||++..+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67889999999999999987776554
No 351
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.27 E-value=0.22 Score=45.16 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=21.8
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..+..++++|+.||||||++..+...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999998777654
No 352
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.27 E-value=0.35 Score=42.29 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..+.++|++||||||++..++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999988777654
No 353
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.22 E-value=0.2 Score=45.19 Aligned_cols=21 Identities=43% Similarity=0.453 Sum_probs=17.7
Q ss_pred eEEEEcCCCCchhhHHHHHHH
Q 008735 59 ILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~ 79 (555)
.+.++||.||||||+...+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998877643
No 354
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.21 E-value=0.16 Score=50.71 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=23.1
Q ss_pred HHhc--CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 53 EVRK--NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 53 ~i~~--~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+.. ++.+.|+||+||||||++..+.-.
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456 889999999999999999777644
No 355
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.21 E-value=0.24 Score=48.22 Aligned_cols=43 Identities=9% Similarity=0.151 Sum_probs=30.9
Q ss_pred HHHHHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 50 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 50 ~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
++--+..|..++|.|++|+|||+++.+++...... +..++++.
T Consensus 61 ~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~--g~~vl~~s 103 (315)
T 3bh0_A 61 MTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHS 103 (315)
T ss_dssp HHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT--TCEEEEEE
T ss_pred hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 33335678999999999999999888877665432 34566654
No 356
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.20 E-value=0.24 Score=44.57 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..++++|+.||||||++..+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999987776543
No 357
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.13 E-value=0.22 Score=43.59 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++|+|+.||||||+...+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68899999999999887766543
No 358
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.12 E-value=0.53 Score=50.38 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 45 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 45 ~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..-+.+...+..++.+++.||+|+||||++..+....
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3445666778899999999999999998887776544
No 359
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.11 E-value=0.25 Score=48.30 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=22.9
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..|..++|.||+|||||+++.+++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 356899999999999999888887654
No 360
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.10 E-value=0.12 Score=54.96 Aligned_cols=25 Identities=28% Similarity=0.520 Sum_probs=21.2
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.++||+||||||++..+.
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHh
Confidence 4578999999999999999985544
No 361
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.06 E-value=0.21 Score=43.91 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=16.8
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+..++++|+.||||||++..+....
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999987765443
No 362
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.06 E-value=0.18 Score=49.94 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=27.1
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
..|+.++|.||+||||||++.+++...... +..++++.
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~ 96 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFID 96 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEE
Confidence 357899999999999999887777654322 33455543
No 363
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.01 E-value=1.4 Score=50.88 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecC-ccccccccCC
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-IAETSVTIPG 359 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-~~e~Gvdip~ 359 (555)
.+.+++|.+||+.-+.+.++.+.+.+... ++.+..+++..+..++..+.+.+..|..+|+|+|. .+...+.+.+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~-----~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANW-----PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTT-----TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcC-----CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 35689999999999999999988775422 56788899999999999999988999999999994 5566688889
Q ss_pred eEEEE
Q 008735 360 IKYVI 364 (555)
Q Consensus 360 v~~VI 364 (555)
+.+||
T Consensus 726 l~lvI 730 (1151)
T 2eyq_A 726 LGLLI 730 (1151)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 98888
No 364
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.00 E-value=0.93 Score=40.50 Aligned_cols=39 Identities=33% Similarity=0.314 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccH
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 97 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r 97 (555)
...++|.+++|.||||.+.-..+...- .|.+|++++-.+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g--~G~rV~~vQF~K 66 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG--HGKNVGVVQFIK 66 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEeeC
Confidence 346777888999999877666555432 356788875433
No 365
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.96 E-value=0.16 Score=51.54 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=22.0
Q ss_pred HHHhcCCe--EEEEcCCCCchhhHHHHHH
Q 008735 52 EEVRKNDI--LIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 52 ~~i~~~~~--~ii~apTGsGKT~~l~~~i 78 (555)
-.+..|.. +.|+||+||||||++-.+.
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHh
Confidence 34568888 9999999999999997765
No 366
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.91 E-value=0.24 Score=46.47 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+.+++.||+||||||++..+....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999887766543
No 367
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.87 E-value=0.21 Score=49.96 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=22.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..++.+++.||+||||||++..+.-.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 356889999999999999998766643
No 368
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.84 E-value=0.12 Score=55.20 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=22.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.++||+||||||++..+.-.
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999776543
No 369
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=88.82 E-value=0.24 Score=44.79 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=18.0
Q ss_pred CeEEEEcCCCCchhhHHHHHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~ 79 (555)
...+|+||||||||+++..+.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999988765543
No 370
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.82 E-value=0.21 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCCchhhHHHHHHH
Q 008735 57 NDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..+.|+||+||||||++-.+..
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999998865543
No 371
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.71 E-value=0.23 Score=43.23 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+.++++|+.||||||+...+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999887765543
No 372
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.68 E-value=0.12 Score=46.85 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.5
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++|+|+.||||||++..+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999998776544
No 373
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.64 E-value=0.21 Score=50.12 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=17.4
Q ss_pred CeEEEEcCCCCchhhHHHHHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~ 79 (555)
..++|+||||||||+++..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 4688999999999988755443
No 374
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.60 E-value=0.3 Score=48.03 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=24.8
Q ss_pred HHHHHH----hcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 49 RLVEEV----RKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 49 ~~i~~i----~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++..+ ..+..+.++||+||||||++..+.-.
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 455544 46789999999999999998777643
No 375
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.47 E-value=0.19 Score=53.66 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=23.7
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+..|+.+.++||+||||||++-.+.-.
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 3568999999999999999998777643
No 376
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.46 E-value=0.27 Score=44.18 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..++++|+.||||||+...+....
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999987766543
No 377
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.37 E-value=0.19 Score=49.73 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=23.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|.||+|+||||++..++-..
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999987766543
No 378
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.18 E-value=0.19 Score=52.88 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=22.5
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..|+.+.|+||+||||||++-.+.-.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999877643
No 379
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.16 E-value=0.33 Score=44.30 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..+++.|+.||||||++..+....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999987776544
No 380
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.16 E-value=0.27 Score=43.85 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+++.|+.||||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998776544
No 381
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.14 E-value=0.28 Score=43.28 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..++++|+.||||||+...+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999887765543
No 382
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.09 E-value=0.33 Score=46.86 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..+++.||+|+|||+++..+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999887666544
No 383
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.09 E-value=0.5 Score=43.05 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.0
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.|..+++.|+.||||||++..+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998766543
No 384
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.08 E-value=0.15 Score=46.03 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=18.6
Q ss_pred hcCCeEEEEcCCCCchhhHHHH
Q 008735 55 RKNDILIIVGETGSGKTTQLPQ 76 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~ 76 (555)
..+..++++|++|+||||++-.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~ 45 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNT 45 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 4567899999999999998833
No 385
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.03 E-value=0.2 Score=53.54 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=22.5
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..|+.+.|.||+||||||++-.+.-.
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999877643
No 386
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.00 E-value=0.27 Score=43.58 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..++++|+.||||||++..+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999887765543
No 387
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.98 E-value=0.2 Score=53.51 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=23.2
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
.+..|+.+.|+||+||||||++-.+.-
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhC
Confidence 357899999999999999999977653
No 388
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.97 E-value=0.16 Score=54.17 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=21.5
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.++||+||||||++..+.
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999986654
No 389
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.96 E-value=0.31 Score=45.02 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=21.4
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+..+++.|+.||||||++..+....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999987776554
No 390
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.88 E-value=0.2 Score=52.75 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.6
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998776543
No 391
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.85 E-value=0.13 Score=49.73 Aligned_cols=41 Identities=12% Similarity=-0.055 Sum_probs=28.7
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCccH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 97 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~r 97 (555)
.| .+.|.||+|||||+++.+++........+..++++....
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 45 789999999999999888876654322244666665443
No 392
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.77 E-value=0.33 Score=47.34 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.2
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.|..++|.||+|||||+++.+++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999888887653
No 393
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.77 E-value=0.28 Score=44.64 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999987776544
No 394
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.76 E-value=0.35 Score=47.56 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=24.2
Q ss_pred HHHHHHHhcC--CeEEEEcCCCCchhhHHHHHHHh
Q 008735 48 KRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 48 ~~~i~~i~~~--~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+.+...+..+ .++++.||+|+|||+++-.+...
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555666 56999999999999887665543
No 395
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.73 E-value=0.26 Score=46.92 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+.+++.||+||||||++-.+.-..
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 459999999999999887665543
No 396
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=87.72 E-value=0.4 Score=49.85 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=31.6
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 39 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 39 ~~l~~~~~Q~~~i~~i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
....-...-+.+...+..+.++++.||+|+|||+++..+...
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHH
Confidence 344445556667777889999999999999999777655443
No 397
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.72 E-value=0.31 Score=42.20 Aligned_cols=23 Identities=22% Similarity=0.145 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++++|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999887765543
No 398
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.67 E-value=0.31 Score=43.21 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=18.3
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++++|+.||||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999988776543
No 399
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.62 E-value=0.42 Score=46.15 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=21.9
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
.+..++.+.+.||+||||||++-.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhc
Confidence 44578999999999999999986654
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.52 E-value=0.31 Score=44.76 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999987776543
No 401
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.50 E-value=0.29 Score=44.64 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=21.3
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+.|..+++.|+.||||||++..+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 56889999999999999998776543
No 402
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.48 E-value=1.2 Score=48.80 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
-+-+++.||.|+|||+++-.+..+.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999998887665544
No 403
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=87.46 E-value=0.24 Score=50.59 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=23.6
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+..|+.+.|.||+||||||++..++-..
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4579999999999999999987776544
No 404
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.38 E-value=0.29 Score=46.12 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
...++++|+.||||||++..+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999988776543
No 405
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.35 E-value=0.28 Score=44.69 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCCchhhHHHHHHH
Q 008735 57 NDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
+..++|+|+.||||||++..+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998876643
No 406
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.31 E-value=0.29 Score=46.61 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+.+++.||+||||||++..+....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 459999999999998887766543
No 407
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.30 E-value=0.28 Score=45.28 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=19.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
...|..+++.|+.||||||++..+...
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998776543
No 408
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=87.28 E-value=0.3 Score=43.73 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..+.|+|++||||||+...+...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46889999999999988766543
No 409
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.27 E-value=0.27 Score=44.31 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=28.3
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhcC----CeEEEEcCCCCchhhHHHHH
Q 008735 30 RRQKILQQRKSLPIASVEKRLVEEVRKN----DILIIVGETGSGKTTQLPQF 77 (555)
Q Consensus 30 ~~~~~~~~~~~l~~~~~Q~~~i~~i~~~----~~~ii~apTGsGKT~~l~~~ 77 (555)
.+..+++.++ ..+..+ -..+..+.++ +.+++.||.|+|||+++..+
T Consensus 29 ~I~~~l~yq~-~~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~al 78 (212)
T 1tue_A 29 PIVQFLRYQQ-IEFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSF 78 (212)
T ss_dssp HHHHHHHHTT-CCHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHH
T ss_pred HHHHHHHHcC-cCHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHH
Confidence 4556666664 333333 2333334333 47999999999999877444
No 410
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.25 E-value=0.22 Score=46.79 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=20.2
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+..++++|++||||||++..+...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999988766544
No 411
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.21 E-value=0.35 Score=50.91 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|..++++|++||||||++..+...
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHh
Confidence 457889999999999999988766544
No 412
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.18 E-value=0.27 Score=51.74 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=22.3
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
...|+.+.++||+||||||++-.+.-
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 45789999999999999999877653
No 413
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.12 E-value=0.34 Score=49.62 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=30.7
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
-+..|..++|.|++|+|||+++.+++...... +..++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fS 232 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHS 232 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEEC
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEE
Confidence 34567899999999999999888887765443 45666665
No 414
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=87.10 E-value=0.3 Score=48.81 Aligned_cols=22 Identities=41% Similarity=0.803 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCchhhHHHHHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~ 79 (555)
...+|+||||+|||+++..+.+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988776654
No 415
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=87.05 E-value=2.2 Score=38.98 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=55.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCc-----c-ccc
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI-----A-ETS 354 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~-----~-e~G 354 (555)
.+.++||.+|++.-+.++++.+.+.... ..++.+..++|+.+..++...+. ..+|+|+|.- + ...
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~~ 161 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIK----MEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELDY 161 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT----STTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTTS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcc----cCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcCC
Confidence 3568999999999999999888876322 12577888999999887766553 3689999972 1 234
Q ss_pred cccCCeEEEE
Q 008735 355 VTIPGIKYVI 364 (555)
Q Consensus 355 vdip~v~~VI 364 (555)
+++.++++||
T Consensus 162 ~~~~~~~~lV 171 (230)
T 2oxc_A 162 LNPGSIRLFI 171 (230)
T ss_dssp SCGGGCCEEE
T ss_pred cccccCCEEE
Confidence 5667777777
No 416
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=87.04 E-value=0.4 Score=46.43 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=20.8
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..+..+++.||+|+|||+++..+...
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHh
Confidence 45779999999999999777665543
No 417
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.04 E-value=4.5 Score=36.36 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=55.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCc-----c-cccc
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI-----A-ETSV 355 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~-----~-e~Gv 355 (555)
..++||.+|++.-+.++++.+++.... .++..+..++|+.+..++...+. .+..+|+|+|.- + ...+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~ 154 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKY----MPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSL 154 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTT----STTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSS
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhh----CCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCC
Confidence 347999999999999998888776332 12677888999998876655443 245689999962 1 2346
Q ss_pred ccCCeEEEE
Q 008735 356 TIPGIKYVI 364 (555)
Q Consensus 356 dip~v~~VI 364 (555)
++.++++||
T Consensus 155 ~~~~~~~lV 163 (220)
T 1t6n_A 155 NLKHIKHFI 163 (220)
T ss_dssp CCTTCCEEE
T ss_pred CcccCCEEE
Confidence 777888877
No 418
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=87.04 E-value=0.31 Score=47.97 Aligned_cols=21 Identities=43% Similarity=0.760 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCchhhHHHHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i 78 (555)
...+|+||||||||+++..+.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 577899999999999887543
No 419
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=86.78 E-value=0.56 Score=46.47 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
++.+++.||+|+|||+++..+....
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999998887766554
No 420
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=86.75 E-value=0.2 Score=54.36 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.8
Q ss_pred hcCCeEEEEcCCCCchhhHHH
Q 008735 55 RKNDILIIVGETGSGKTTQLP 75 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~ 75 (555)
..|+.+.|+||+||||||++-
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~ 366 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVN 366 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHT
T ss_pred cCCCEEEEEeeCCCCHHHHHH
Confidence 468999999999999999984
No 421
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.69 E-value=0.32 Score=48.26 Aligned_cols=38 Identities=32% Similarity=0.308 Sum_probs=27.3
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 95 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P 95 (555)
.|+.++|.|++|+|||+++..++..... .+..++++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeC
Confidence 5789999999999999988777765432 2334555543
No 422
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.68 E-value=0.36 Score=42.90 Aligned_cols=22 Identities=27% Similarity=0.681 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++++|++|+||||++-.+.-.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999777644
No 423
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.61 E-value=0.66 Score=42.99 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=21.4
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+.|..+++.|+.||||||++..+...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998776543
No 424
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=86.49 E-value=0.21 Score=54.18 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=18.9
Q ss_pred HhcCCeEEEEcCCCCchhhHH
Q 008735 54 VRKNDILIIVGETGSGKTTQL 74 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l 74 (555)
+..|+.+.|+||+||||||++
T Consensus 41 i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 41 IPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHh
Confidence 357899999999999999996
No 425
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.43 E-value=0.29 Score=50.46 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+.+.|+||+||||||++..+.-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 78999999999999998777643
No 426
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.43 E-value=0.38 Score=42.97 Aligned_cols=22 Identities=27% Similarity=0.681 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++++|++|+||||++-.+.-.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999998777644
No 427
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.27 E-value=0.48 Score=43.83 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=20.5
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
....+.|.||+||||||++..+....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44589999999999999887766443
No 428
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.10 E-value=0.29 Score=54.91 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.1
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHH
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
+..|+.+.|+||+||||||++-.+.
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999998876
No 429
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=86.03 E-value=0.45 Score=43.43 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.3
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.|..+++.|+.||||||++..+....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998776554
No 430
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=85.96 E-value=0.63 Score=46.11 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+.+++.||+|+|||+++..+....
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999998887765543
No 431
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=85.84 E-value=0.89 Score=45.85 Aligned_cols=78 Identities=9% Similarity=0.092 Sum_probs=62.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCc-----cccc
Q 008735 280 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI-----AETS 354 (555)
Q Consensus 280 ~~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~-----~e~G 354 (555)
..++++||.+|++.-+.++++.+.+... .++.+..+||+.+..++......+..|..+|+|+|+- +..
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~- 134 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK- 134 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-
Confidence 3467899999999999999999988532 2778999999999988877777777788899999972 222
Q ss_pred cccCCeEEEE
Q 008735 355 VTIPGIKYVI 364 (555)
Q Consensus 355 vdip~v~~VI 364 (555)
++..++++||
T Consensus 135 ~~~~~~~~iV 144 (414)
T 3oiy_A 135 LSQKRFDFVF 144 (414)
T ss_dssp HTTCCCSEEE
T ss_pred hccccccEEE
Confidence 5556778877
No 432
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=85.61 E-value=0.46 Score=45.70 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchhhHHHHHHHhc
Q 008735 58 DILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..+++.||+|+|||+++..+....
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999998887666554
No 433
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=85.61 E-value=3.8 Score=36.33 Aligned_cols=76 Identities=8% Similarity=0.107 Sum_probs=54.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecC-----cccc-c
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-----IAET-S 354 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-----~~e~-G 354 (555)
.+.++||.+|++.-++++++.+.+..... ++..+..++|+.+..++...+. +..+|+|+|. .+.. .
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHM----GGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTS----SSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhc----CCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCC
Confidence 34579999999999999998887764322 2567888899988776554432 3568999997 2222 3
Q ss_pred cccCCeEEEE
Q 008735 355 VTIPGIKYVI 364 (555)
Q Consensus 355 vdip~v~~VI 364 (555)
+++.++++||
T Consensus 142 ~~~~~~~~lV 151 (206)
T 1vec_A 142 AKVDHVQMIV 151 (206)
T ss_dssp SCCTTCCEEE
T ss_pred cCcccCCEEE
Confidence 4667788877
No 434
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.55 E-value=0.42 Score=46.69 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
...+|+||||||||+++..+.+.
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHHT
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 38999999999999988776644
No 435
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=85.38 E-value=0.48 Score=48.34 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=21.6
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++.++|+||+|||||+++..+....
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 47899999999999999887766543
No 436
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=85.23 E-value=0.5 Score=46.10 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+.+++.||+|+|||+++..+..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4789999999999998887666543
No 437
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.22 E-value=0.47 Score=50.59 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
|+.+.|.||+||||||++-.+.-.
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Confidence 477999999999999999777643
No 438
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.21 E-value=1.9 Score=39.72 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=55.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecC-----ccc-ccc
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-----IAE-TSV 355 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-----~~e-~Gv 355 (555)
+..+||.+|++.-+.++++.+.+..... ++.+..++|+.+..++...+.. ..+|+|+|. .+. ..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~ 172 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRAC-----RLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKT 172 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhc-----CceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCC
Confidence 5679999999999999988887764432 5678889999998877655433 367999995 222 245
Q ss_pred ccCCeEEEE
Q 008735 356 TIPGIKYVI 364 (555)
Q Consensus 356 dip~v~~VI 364 (555)
++.++++||
T Consensus 173 ~~~~~~~lV 181 (242)
T 3fe2_A 173 NLRRTTYLV 181 (242)
T ss_dssp CCTTCCEEE
T ss_pred CcccccEEE
Confidence 778888887
No 439
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=85.07 E-value=0.64 Score=45.94 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..+.++|++|+||||++-.++-.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999877754
No 440
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=84.95 E-value=0.48 Score=52.26 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.9
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
.|+.++|+||+||||||++-++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 678999999999999998877654
No 441
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.90 E-value=0.52 Score=43.60 Aligned_cols=27 Identities=26% Similarity=0.156 Sum_probs=21.4
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
...+..+.|+|+.||||||+...+...
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 446778999999999999988766543
No 442
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=84.90 E-value=0.22 Score=48.18 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=21.5
Q ss_pred HHhcCCeEEEEcCCCCchhhHHHHH
Q 008735 53 EVRKNDILIIVGETGSGKTTQLPQF 77 (555)
Q Consensus 53 ~i~~~~~~ii~apTGsGKT~~l~~~ 77 (555)
.+..|+.+.++||+|+||||++-.+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L 193 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAI 193 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHh
Confidence 4557899999999999999998665
No 443
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.76 E-value=2 Score=42.70 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
...+++.||+|+|||+++..+....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999998876665443
No 444
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=84.74 E-value=0.93 Score=40.94 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeCcc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 96 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~P~ 96 (555)
++.+++.|+-||||||++..+.... ..+...+..-.|.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L--~~~~~v~~~~eP~ 39 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL--VKDYDVIMTREPG 39 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH--TTTSCEEEEESST
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HCCCCEEEeeCCC
Confidence 4678999999999999987655432 2223334444564
No 445
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=84.42 E-value=0.51 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCchhhHHHHHHH
Q 008735 57 NDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
|+.++|+||+||||||++-++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 78999999999999998877654
No 446
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=84.36 E-value=0.5 Score=46.85 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=27.5
Q ss_pred cCCCCHHHHHhhcCcCCCCCcEEEEecCccccccccCCeEEEEeCC
Q 008735 322 FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPG 367 (555)
Q Consensus 322 h~~l~~~~r~~i~~~f~~g~~~vlvaT~~~e~Gvdip~v~~VId~g 367 (555)
.+++++..|..+++.+..-..-+|++|. .+. ..+-.++++-|
T Consensus 302 ~s~LD~~~~~~l~~~l~~~~qt~i~~th-~~~---~~~~i~~l~~G 343 (359)
T 2o5v_A 302 TAELDPHRRQYLLDLAASVPQAIVTGTE-LAP---GAALTLRAQAG 343 (359)
T ss_dssp GGCCCHHHHHHHHHHHHHSSEEEEEESS-CCT---TCSEEEEEETT
T ss_pred cccCCHHHHHHHHHHHHhcCcEEEEEEe-ccc---cCCEEEEEECC
Confidence 7899999888887766442345677777 333 44555666644
No 447
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.31 E-value=0.57 Score=41.92 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..+.++|+.||||||+...+...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999888776544
No 448
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.30 E-value=0.47 Score=47.20 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=26.6
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
.|+.++|.||+|+|||+++..++...... +..++++.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~ 109 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFID 109 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEE
Confidence 56899999999999998887777654322 33455554
No 449
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.28 E-value=0.59 Score=39.66 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++++|++|+|||+++-.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999998777643
No 450
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=84.24 E-value=0.53 Score=45.68 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=21.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..+..+++.||+|+|||+++.+++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 345677899999999999888777665
No 451
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=84.15 E-value=0.54 Score=49.54 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=21.4
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+..+++.||+|+|||+++..+....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 37899999999999998887666544
No 452
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=84.12 E-value=4.5 Score=35.48 Aligned_cols=63 Identities=13% Similarity=0.312 Sum_probs=41.9
Q ss_pred CCcHHHHHHHHHHHh--cCCeEEEEcCCCCchhhH-HHHHHHhccccCCCcEEEEeCccHHHHHHHHH
Q 008735 41 LPIASVEKRLVEEVR--KNDILIIVGETGSGKTTQ-LPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAK 105 (555)
Q Consensus 41 l~~~~~Q~~~i~~i~--~~~~~ii~apTGsGKT~~-l~~~i~~~~~~~~~~~i~~~~P~r~l~~~~~~ 105 (555)
.|-..-|..++..+. ..+..+|.|+-|++|+.. +..++... ...|+.|.++.|+........+
T Consensus 33 ~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a--~~~Gr~V~vLAp~~~s~~~l~~ 98 (189)
T 2l8b_A 33 VPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMA--REQGREVQIIAADRRSQMNMKQ 98 (189)
T ss_dssp CCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHH--HHTTCCEEEECSTTHHHHHHSC
T ss_pred cccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHH--HhcCeEEEEEcCchHHHHHHHh
Confidence 344456777777774 556899999999999944 32222111 2247789999999877655544
No 453
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=84.05 E-value=0.79 Score=47.30 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=23.6
Q ss_pred HHHHHH--hcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 49 RLVEEV--RKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 49 ~~i~~i--~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++..+ ....++++.||+|+|||+++..+...
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 445555 34568999999999999887666544
No 454
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=84.05 E-value=0.41 Score=53.45 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.6
Q ss_pred hcCCeEEEEcCCCCchhhHHHHHH
Q 008735 55 RKNDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~i 78 (555)
..|+.++|+||+||||||++-++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHH
Confidence 468899999999999999886654
No 455
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=84.02 E-value=0.81 Score=45.52 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=24.8
Q ss_pred HHHHHHH---hcCCeEEEEcCCCCchhhHHHHHHH
Q 008735 48 KRLVEEV---RKNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 48 ~~~i~~i---~~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
-.+++.+ ..|+.+.|.||+|+|||+++..+..
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 3455544 4799999999999999988876554
No 456
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=84.00 E-value=0.54 Score=40.92 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=19.4
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHH
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
.+..++++|++|+|||+++-.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 355789999999999999877653
No 457
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=83.97 E-value=0.19 Score=51.03 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=19.8
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.| .++++|||||||||++..+...
T Consensus 60 ~G-~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp SS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHH
Confidence 46 8999999999999988666543
No 458
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=83.92 E-value=2.9 Score=37.81 Aligned_cols=74 Identities=9% Similarity=0.085 Sum_probs=46.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecCc------cccc
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI------AETS 354 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~~------~e~G 354 (555)
.+.++||.+|++.-+.++++.+.+.... .+..+..++|+.+..++...+. ..+|+|+|.- ....
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv~Tp~~l~~~~~~~~ 150 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFH-----MDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRR 150 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEEEECC----------CT-----TCSEEEECHHHHHHHHHTTS
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcc-----cCceEEEEeCCcchHHHHhcCC-----CCCEEEECHHHHHHHHHhCC
Confidence 3568999999999999999888876432 2567888899887765544332 2679999962 2335
Q ss_pred cccCCeEEEE
Q 008735 355 VTIPGIKYVI 364 (555)
Q Consensus 355 vdip~v~~VI 364 (555)
+++..+.+||
T Consensus 151 ~~~~~~~~iV 160 (224)
T 1qde_A 151 FRTDKIKMFI 160 (224)
T ss_dssp SCCTTCCEEE
T ss_pred cchhhCcEEE
Confidence 5677788877
No 459
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.84 E-value=2.7 Score=38.61 Aligned_cols=76 Identities=9% Similarity=0.073 Sum_probs=46.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecC-----cccc-c
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-----IAET-S 354 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-----~~e~-G 354 (555)
.+.++||.+|++.-+.++++.+.+.... .+..+..++|+....++ ...+..+...|+|+|. .+.. .
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~ 168 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDY-----MGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRY 168 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----TTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTS
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhh-----cCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCC
Confidence 3568999999999999999988876322 14567777888765433 2344456678999994 3333 3
Q ss_pred cccCCeEEEE
Q 008735 355 VTIPGIKYVI 364 (555)
Q Consensus 355 vdip~v~~VI 364 (555)
+++..+++||
T Consensus 169 ~~~~~~~~lV 178 (237)
T 3bor_A 169 LSPKWIKMFV 178 (237)
T ss_dssp SCSTTCCEEE
T ss_pred cCcccCcEEE
Confidence 5677788877
No 460
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=83.81 E-value=0.62 Score=40.09 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.0
Q ss_pred CeEEEEcCCCCchhhHHHHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i 78 (555)
..++++|++|+|||+++-.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 358899999999999987765
No 461
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.80 E-value=0.6 Score=39.64 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++++|++|+|||+++-.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999998777644
No 462
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=83.70 E-value=0.63 Score=39.76 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=18.1
Q ss_pred eEEEEcCCCCchhhHHHHHHH
Q 008735 59 ILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~ 79 (555)
.++++|++|+|||+++-.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999877664
No 463
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=83.66 E-value=0.98 Score=46.41 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
++.+++.||+|+|||+++..+....
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHh
Confidence 3689999999999998876555443
No 464
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=83.60 E-value=4.2 Score=37.65 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=54.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcCCCCCcEEEEecC-----ccc--c
Q 008735 281 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-----IAE--T 353 (555)
Q Consensus 281 ~~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f~~g~~~vlvaT~-----~~e--~ 353 (555)
.+.++||.+|++.-+.++++.+.+..... ++.+..++|+.+..++...+. +...|+|+|. .+. .
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~ 180 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSI-----GVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTK 180 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGG-----TCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHST
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccC-----CeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCC
Confidence 35679999999999999998887764321 567888899988766544432 3468999995 222 3
Q ss_pred ccccCCeEEEE
Q 008735 354 SVTIPGIKYVI 364 (555)
Q Consensus 354 Gvdip~v~~VI 364 (555)
++++.++++||
T Consensus 181 ~~~l~~~~~lV 191 (249)
T 3ber_A 181 GFNLRALKYLV 191 (249)
T ss_dssp TCCCTTCCEEE
T ss_pred CcCccccCEEE
Confidence 56788888887
No 465
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=83.34 E-value=0.95 Score=44.25 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=43.8
Q ss_pred CCccCCC--CCCHHHHhhcccCCCChHHHHHHHHhhhc-CCHHHHHHHHHhhc-CCCcccCChhhHHHHHHH
Q 008735 473 GALTDDC--KLSDPVGHQMARLPLDPIYSKALIVAGQF-NCLEEMLITVAMLS-VESIFFRSPGEVRRGKKC 540 (555)
Q Consensus 473 g~l~~~~--~~T~~lG~~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~i~a~~~-~~~~~~~~~~~~~~~~~~ 540 (555)
|++++++ ..|+ +|+++|++||++.+++.+...+.- ....+++.+.|.-+ +.++-.++.++....+-.
T Consensus 1 ~~~~~~~~l~~t~-lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~ 71 (328)
T 3im1_A 1 GAMEATEIISTLS-NGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLS 71 (328)
T ss_dssp ---CCCCCCTTSS-SCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHH
T ss_pred CCccCCCCccCCc-hhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHH
Confidence 5676666 4676 999999999999999999987644 34455666555433 345556666655544433
No 466
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=83.33 E-value=0.66 Score=40.94 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.-.++++|++|+|||+++-.+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999998776543
No 467
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=83.28 E-value=0.22 Score=45.99 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhHHHHHHHhc
Q 008735 60 LIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 60 ~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+.|+|||||||||++..+....
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4588999999999987776544
No 468
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=83.26 E-value=0.62 Score=44.74 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCchhhHHHHHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~ 79 (555)
..++++|++||||||++..+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999998877654
No 469
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=83.13 E-value=0.66 Score=41.60 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+.|+|+.||||||+...+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78899999999999887765443
No 470
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.91 E-value=0.91 Score=45.50 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=20.4
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
..+-+++.||+|+|||+++-.++.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 45789999999999997776555444
No 471
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.89 E-value=1 Score=45.94 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=35.8
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHhhcCCCcHHHHHHHHHHH--hcCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 14 HNPKLHSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEV--RKNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Q~~~i~~i--~~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
+.|..++....++. ...+.+.+.-.+|+.. .+....+ ..-+-+++.||+|+|||+++..++.+.
T Consensus 202 e~P~vt~~DIgGl~--~~k~~L~e~V~~pl~~--pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 202 EKPDVTYSDVGGCK--DQIEKLREVVELPLLS--PERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SSCSCCCSSCTTCH--HHHHHHHHHTHHHHHC--HHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHhccHH--HHHHHHHHHHHHHhcC--HHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 44555555554433 2333344333333321 2233332 456889999999999997776655544
No 472
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=82.88 E-value=0.71 Score=40.03 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++++|++|+|||+++-.+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999998776644
No 473
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=82.78 E-value=0.64 Score=43.10 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..+++.|+.||||||++..+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999998776544
No 474
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=82.75 E-value=0.65 Score=52.03 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.1
Q ss_pred hcCCeEEEEcCCCCchhhHHHHH
Q 008735 55 RKNDILIIVGETGSGKTTQLPQF 77 (555)
Q Consensus 55 ~~~~~~ii~apTGsGKT~~l~~~ 77 (555)
..|+.++|+||+||||||++.++
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 35789999999999999998766
No 475
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=82.70 E-value=0.74 Score=39.39 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++++|++|+|||+++-.++...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999997776543
No 476
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=82.69 E-value=1.4 Score=46.88 Aligned_cols=74 Identities=16% Similarity=0.057 Sum_probs=59.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEecCCCCHHHHHhhcCcC--CCCCcEEEEecCc---------
Q 008735 282 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPA--AAGFRKVILATNI--------- 350 (555)
Q Consensus 282 ~~~iLVF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~f--~~g~~~vlvaT~~--------- 350 (555)
++.+||.+|++.-+++..+.|.+. ++.+..++|+++..++..+...+ ..+..+|+++|+-
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~---------gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~ 154 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL---------GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFM 154 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH---------TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc---------CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHH
Confidence 578999999999999999988876 77899999999999988887766 5678999999982
Q ss_pred --cccccccCCeEEEE
Q 008735 351 --AETSVTIPGIKYVI 364 (555)
Q Consensus 351 --~e~Gvdip~v~~VI 364 (555)
+....+...+.+||
T Consensus 155 ~~l~~~~~~~~i~~iV 170 (591)
T 2v1x_A 155 SRLEKAYEARRFTRIA 170 (591)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHhhhhccCCcEEE
Confidence 12233455677766
No 477
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=82.63 E-value=0.73 Score=48.04 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=29.7
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHhccccCCCcEEEEeC
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 94 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~~~~~~~~~~i~~~~ 94 (555)
+..|..++|.|++|+|||+++.+++....... +..++++.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s 278 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAM 278 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEE
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEe
Confidence 55788999999999999999888887665332 33455554
No 478
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=82.62 E-value=0.69 Score=40.41 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=20.6
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.|+-++++|+.|+||||++..++..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4667899999999999888777653
No 479
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.58 E-value=0.35 Score=45.65 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHh
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.+.+++.||+|+|||+++..+...
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999888666544
No 480
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=82.53 E-value=0.7 Score=43.19 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCchhhHHHHHHHh
Q 008735 58 DILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
..+.|+|+.||||||+...+...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999988766543
No 481
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=82.52 E-value=0.81 Score=44.87 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=20.5
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
....+++.||+|+|||+++..+....
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCceEEEECCCCccHHHHHHHHHHhC
Confidence 34579999999999998876665543
No 482
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=82.52 E-value=0.76 Score=39.06 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++++|++|+|||+++-.+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999998766643
No 483
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=82.52 E-value=0.57 Score=44.97 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=15.7
Q ss_pred CCeEEEEcCCCCchhhHHHHHHH
Q 008735 57 NDILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~ 79 (555)
...+.|+||.||||||+.-.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998866543
No 484
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.48 E-value=0.75 Score=39.30 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchhhHHHHHHHhc
Q 008735 59 ILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.++++|++|+|||+++-.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999987776443
No 485
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=82.29 E-value=0.75 Score=39.37 Aligned_cols=22 Identities=27% Similarity=0.667 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++++|++|+|||+++-.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999998777643
No 486
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=82.28 E-value=0.77 Score=39.07 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++++|++|+|||+++-.+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999998776643
No 487
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=82.28 E-value=0.76 Score=40.29 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCchhhHHHHHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i~ 79 (555)
..++++|++|+|||+++-.+.-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999977753
No 488
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=82.28 E-value=0.72 Score=40.68 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=18.1
Q ss_pred EEEEcCCCCchhhHHHHHHHh
Q 008735 60 LIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 60 ~ii~apTGsGKT~~l~~~i~~ 80 (555)
++|+|++|||||+++..+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999998877644
No 489
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=82.22 E-value=1.1 Score=46.93 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=27.4
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHhccccC--CCcEEEEeCcc
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFHAGFCR--DGKLIGVTQPR 96 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~~~~~~--~~~~i~~~~P~ 96 (555)
+..+++|.|.||||||+++..++....... ...+++++-|.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 457899999999999988777665433221 23355555555
No 490
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=82.13 E-value=0.93 Score=44.58 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=20.7
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
++..+.++|++|+||||++..++..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999988776643
No 491
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=82.07 E-value=0.73 Score=43.97 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCchhhHHHHHH
Q 008735 58 DILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 58 ~~~ii~apTGsGKT~~l~~~i 78 (555)
..++|+|+.||||||++..+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999887766
No 492
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=82.04 E-value=1.8 Score=40.74 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=32.1
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhcCC-----eEEEEcCCCCchhhHHHHHHH
Q 008735 28 SSRRQKILQQRKSLPIASVEKRLVEEVRKND-----ILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~Q~~~i~~i~~~~-----~~ii~apTGsGKT~~l~~~i~ 79 (555)
-..+..+++..+.-|+ .+ ...+..+.+++ .+++.||.|+|||+++..++.
T Consensus 72 ~n~i~~~l~~qg~~~~-~~-~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 72 SNRIYKILELNGYDPQ-YA-ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp GCHHHHHHHHTTCCHH-HH-HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHH-HH-HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3356677777665543 22 23455555443 699999999999977754443
No 493
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=81.91 E-value=0.38 Score=53.96 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=22.9
Q ss_pred HhcCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 54 VRKNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 54 i~~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
+..|+.+.|+||+||||||++-.+.-.
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999777543
No 494
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=81.90 E-value=0.83 Score=39.12 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.0
Q ss_pred eEEEEcCCCCchhhHHHHHHH
Q 008735 59 ILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~ 79 (555)
.++++|++|+|||+++-.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999877654
No 495
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=81.86 E-value=0.82 Score=39.49 Aligned_cols=22 Identities=23% Similarity=0.646 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchhhHHHHHHHh
Q 008735 59 ILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.++++|++|+|||+++-.++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999998777643
No 496
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=81.81 E-value=0.76 Score=42.13 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=20.5
Q ss_pred cCCeEEEEcCCCCchhhHHHHHHHh
Q 008735 56 KNDILIIVGETGSGKTTQLPQFLFH 80 (555)
Q Consensus 56 ~~~~~ii~apTGsGKT~~l~~~i~~ 80 (555)
.|..+++.|+.||||||++..+...
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999988666543
No 497
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=81.74 E-value=0.73 Score=40.68 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCCchhhHHHHHH
Q 008735 57 NDILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i 78 (555)
.-.++++|++|+|||+++-.++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999987665
No 498
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=81.68 E-value=1.4 Score=44.95 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchhhHHHHHHHhc
Q 008735 57 NDILIIVGETGSGKTTQLPQFLFHA 81 (555)
Q Consensus 57 ~~~~ii~apTGsGKT~~l~~~i~~~ 81 (555)
.+.+++.||+|+|||+++-.+....
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4789999999999998887666554
No 499
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=81.53 E-value=0.86 Score=38.84 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.1
Q ss_pred eEEEEcCCCCchhhHHHHHHH
Q 008735 59 ILIIVGETGSGKTTQLPQFLF 79 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i~ 79 (555)
.++++|++|+|||+++-.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999877664
No 500
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=81.51 E-value=0.67 Score=40.72 Aligned_cols=20 Identities=65% Similarity=0.918 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhhHHHHHH
Q 008735 59 ILIIVGETGSGKTTQLPQFL 78 (555)
Q Consensus 59 ~~ii~apTGsGKT~~l~~~i 78 (555)
.++++|++|+|||+++-.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999986654
Done!