BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008736
(555 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 15/195 (7%)
Query: 160 ILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEA----ALMELLNFMYXXXXXXXXXXX 215
+LAA + +F L S ES V +R +SE + ++ +MY
Sbjct: 71 VLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSV 130
Query: 216 XXDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQF 275
+VL AD+F + +C L+ + + + L ++ D ++
Sbjct: 131 H-EVLELADRFLLIRLKEFCGEFLKK-KLHLSNCVAIHSLAHMYTLSQLALKAADMIRRN 188
Query: 276 LAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERRE 335
+D EE LP I L+ ++ + SE+ +++ LKW + + E RE
Sbjct: 189 FHKVIQD-----EEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRN----AEERE 239
Query: 336 ILGSRLGRLIRFPYM 350
L +L+R M
Sbjct: 240 RYFEELFKLLRLSQM 254
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 160 ILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYXXXXXXXXXXXXXDV 219
ILAA+SP F +F + M ES++ V I+ E E++ F+Y D+
Sbjct: 192 ILAARSPVFSAMFEHEMEESKKNRV--EINDVEPEVFKEMMCFIY-TGKAPNLDKMADDL 248
Query: 220 LMAADKFEVASCMRYCSRLLRNLPMTCESAL 250
L AADK+ L L + CE AL
Sbjct: 249 LAAADKY-----------ALERLKVMCEDAL 268
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 160 ILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYXXXXXXXXXXXXXDV 219
ILAA+SP F +F + M ES++ V I+ E E++ F+Y D+
Sbjct: 43 ILAARSPVFSAMFEHEMEESKKNRV--EINDVEPEVFKEMMCFIY-TGKAPNLDKMADDL 99
Query: 220 LMAADKFEVASCMRYCSRLLRNLPMTCESAL 250
L AADK+ L L + CE AL
Sbjct: 100 LAAADKYA-----------LERLKVMCEDAL 119
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 160 ILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYXXXXXXXXXXXXXDV 219
+LAA S +F KLF++G +Q + ++E AL L++F Y D+
Sbjct: 53 VLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAE--ALTALMDFAY-TATLTVSTANVGDI 109
Query: 220 LMAADKFEVASCMRYCSRLL 239
L AA E+ + C+ LL
Sbjct: 110 LSAARLLEIPAVSHVCADLL 129
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 160 ILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYXXXXXXXXXXXXXDV 219
+LAA S +F KLF++G +Q + ++E AL L++F Y D+
Sbjct: 43 VLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAE--ALTALMDFAY-TATLTVSTANVGDI 99
Query: 220 LMAADKFEVASCMRYCSRLL 239
L AA E+ + C+ LL
Sbjct: 100 LSAARLLEIPAVSHVCADLL 119
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 15/192 (7%)
Query: 160 ILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEA----ALMELLNFMYXXXXXXXXXXX 215
+LAA + +F L S ES V R +SE + ++ + Y
Sbjct: 53 VLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTGRIRVSTGSV 112
Query: 216 XXDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQF 275
+VL AD+F + +C L+ + + + L ++ D ++
Sbjct: 113 H-EVLELADRFLLIRLKEFCGEFLKK-KLHLSNCVAIHSLAHXYTLSQLALKAADXIRRN 170
Query: 276 LAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERRE 335
+D EE LP I L+ ++ + SE+ +++ LKW + + E RE
Sbjct: 171 FHKVIQD-----EEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRN----AEERE 221
Query: 336 ILGSRLGRLIRF 347
L +L+R
Sbjct: 222 RYFEELFKLLRL 233
>pdb|2F6U|A Chain A, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Citrate
pdb|2F6U|B Chain B, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Citrate
pdb|2F6X|A Chain A, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Sn-G1p And Mpd
pdb|2F6X|B Chain B, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Sn-G1p And Mpd
Length = 234
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 307 LQIASEDAVYDFALKWARTHYPKLEERREILGSRL----GRLIRFPYMTCRKLKKVLTCN 362
L A D + +W R HY L++ EI+ S G ++ P ++ K L CN
Sbjct: 87 LNSADGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKAL-CN 145
Query: 363 DFDPELASKVVL--ESLF 378
D ELA+ L E LF
Sbjct: 146 -IDKELAASYALVGEKLF 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,251,580
Number of Sequences: 62578
Number of extensions: 598638
Number of successful extensions: 1046
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 8
length of query: 555
length of database: 14,973,337
effective HSP length: 104
effective length of query: 451
effective length of database: 8,465,225
effective search space: 3817816475
effective search space used: 3817816475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)