Query 008736
Match_columns 555
No_of_seqs 433 out of 2794
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 15:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 7E-64 1.5E-68 550.2 29.0 376 124-521 16-476 (571)
2 PHA02713 hypothetical protein; 100.0 2.9E-57 6.4E-62 499.2 27.3 370 126-522 7-465 (557)
3 PHA02790 Kelch-like protein; P 100.0 1.5E-52 3.3E-57 455.2 29.9 347 137-522 15-448 (480)
4 PHA03098 kelch-like protein; P 100.0 3.8E-50 8.1E-55 443.5 28.9 354 141-520 6-437 (534)
5 KOG4350 Uncharacterized conser 100.0 1E-31 2.3E-36 267.7 10.4 233 130-381 30-266 (620)
6 KOG2075 Topoisomerase TOP1-int 99.9 1E-23 2.2E-28 215.9 13.5 220 135-365 105-340 (521)
7 KOG4682 Uncharacterized conser 99.8 7.2E-19 1.6E-23 176.5 11.5 176 141-324 66-246 (488)
8 PF07707 BACK: BTB And C-termi 99.7 4.1E-18 9E-23 146.2 4.7 103 249-360 1-103 (103)
9 PF00651 BTB: BTB/POZ domain; 99.7 5.5E-17 1.2E-21 140.9 5.3 99 140-241 6-109 (111)
10 smart00875 BACK BTB And C-term 99.6 1E-15 2.3E-20 130.3 9.1 99 249-357 1-99 (101)
11 KOG4591 Uncharacterized conser 99.6 3.5E-16 7.6E-21 143.7 6.2 158 139-308 61-224 (280)
12 smart00225 BTB Broad-Complex, 99.6 7.4E-15 1.6E-19 121.1 7.5 88 146-236 1-90 (90)
13 KOG4441 Proteins containing BT 99.5 2.3E-14 4.9E-19 158.5 9.6 105 412-522 348-524 (571)
14 KOG0783 Uncharacterized conser 99.5 3.8E-14 8.1E-19 152.9 7.3 139 140-285 708-852 (1267)
15 PHA02713 hypothetical protein; 99.4 1.7E-11 3.6E-16 136.1 17.7 247 233-522 80-400 (557)
16 PHA02790 Kelch-like protein; P 99.1 6.7E-10 1.4E-14 121.4 15.9 89 423-522 287-409 (480)
17 PHA03098 kelch-like protein; P 98.9 2.3E-08 5.1E-13 110.8 14.8 236 243-520 72-389 (534)
18 PLN02153 epithiospecifier prot 98.5 4.4E-07 9.4E-12 94.9 10.7 91 425-521 103-252 (341)
19 TIGR03547 muta_rot_YjhT mutatr 98.5 3.4E-07 7.3E-12 95.9 8.6 52 423-474 29-91 (346)
20 TIGR03547 muta_rot_YjhT mutatr 98.5 3.9E-07 8.5E-12 95.4 8.4 94 423-522 168-323 (346)
21 PF13964 Kelch_6: Kelch motif 98.4 2.5E-07 5.5E-12 68.3 4.7 47 442-511 1-50 (50)
22 TIGR03548 mutarot_permut cycli 98.4 7.4E-07 1.6E-11 92.4 8.6 95 422-522 138-305 (323)
23 PLN02193 nitrile-specifier pro 98.4 1.4E-06 3.1E-11 95.1 10.4 105 405-520 230-377 (470)
24 PLN02153 epithiospecifier prot 98.3 2E-06 4.4E-11 89.9 9.1 93 423-521 50-194 (341)
25 PF01344 Kelch_1: Kelch motif; 98.3 6.2E-07 1.4E-11 65.1 3.3 44 442-508 1-47 (47)
26 TIGR03548 mutarot_permut cycli 98.2 3.9E-06 8.5E-11 87.0 9.3 81 434-520 52-171 (323)
27 KOG0783 Uncharacterized conser 98.2 3.8E-06 8.3E-11 92.2 8.0 108 130-237 544-683 (1267)
28 PLN02193 nitrile-specifier pro 98.2 5.8E-06 1.3E-10 90.3 9.2 93 423-521 193-329 (470)
29 KOG0511 Ankyrin repeat protein 98.1 2.5E-06 5.4E-11 86.3 5.2 149 147-302 295-451 (516)
30 PRK14131 N-acetylneuraminic ac 98.1 5.4E-06 1.2E-10 87.9 6.7 94 423-522 189-345 (376)
31 PRK14131 N-acetylneuraminic ac 98.0 1.1E-05 2.5E-10 85.5 8.3 51 424-474 51-112 (376)
32 KOG1987 Speckle-type POZ prote 97.5 5.2E-05 1.1E-09 77.7 3.2 126 152-285 110-240 (297)
33 PF07646 Kelch_2: Kelch motif; 97.5 0.00016 3.6E-09 53.0 4.4 45 442-508 1-49 (49)
34 smart00612 Kelch Kelch domain. 97.4 0.0001 2.3E-09 52.8 2.9 27 495-521 18-47 (47)
35 KOG2838 Uncharacterized conser 97.4 5.1E-05 1.1E-09 73.9 1.6 99 153-253 262-397 (401)
36 KOG2716 Polymerase delta-inter 97.2 0.0014 3.1E-08 63.7 8.9 92 147-241 7-103 (230)
37 KOG2838 Uncharacterized conser 97.2 0.00022 4.7E-09 69.6 3.3 89 139-227 127-217 (401)
38 PF02214 BTB_2: BTB/POZ domain 97.0 0.00085 1.9E-08 56.3 4.5 86 147-235 1-94 (94)
39 PF11822 DUF3342: Domain of un 97.0 0.0013 2.7E-08 66.8 6.2 90 152-244 14-104 (317)
40 KOG0379 Kelch repeat-containin 96.8 0.0041 8.9E-08 68.2 8.9 93 414-517 140-272 (482)
41 PF13418 Kelch_4: Galactose ox 96.7 0.0013 2.8E-08 48.0 2.5 45 442-509 1-49 (49)
42 KOG3473 RNA polymerase II tran 96.5 0.005 1.1E-07 50.9 5.1 71 153-227 28-111 (112)
43 KOG4693 Uncharacterized conser 96.3 0.0064 1.4E-07 59.7 5.6 89 428-522 162-304 (392)
44 PF13854 Kelch_5: Kelch motif 96.0 0.014 3E-07 41.2 4.5 36 440-475 2-39 (42)
45 PF13415 Kelch_3: Galactose ox 95.9 0.0093 2E-07 43.6 3.6 45 452-518 1-48 (49)
46 KOG0379 Kelch repeat-containin 95.7 0.036 7.8E-07 60.8 8.7 94 424-523 89-227 (482)
47 smart00512 Skp1 Found in Skp1 95.2 0.045 9.7E-07 46.9 5.8 78 147-228 4-104 (104)
48 KOG1665 AFH1-interacting prote 94.4 0.091 2E-06 50.4 6.0 69 166-237 34-105 (302)
49 smart00612 Kelch Kelch domain. 94.3 0.065 1.4E-06 37.9 3.9 32 422-453 14-47 (47)
50 KOG4693 Uncharacterized conser 94.2 0.12 2.5E-06 51.1 6.5 77 441-522 12-141 (392)
51 KOG1724 SCF ubiquitin ligase, 93.5 0.14 2.9E-06 47.5 5.4 99 153-255 16-141 (162)
52 KOG1230 Protein containing rep 92.7 0.29 6.4E-06 51.1 6.8 48 427-474 158-213 (521)
53 KOG2714 SETA binding protein S 91.8 0.56 1.2E-05 49.4 7.6 90 147-239 13-111 (465)
54 KOG4152 Host cell transcriptio 91.1 0.55 1.2E-05 50.3 6.8 56 405-463 93-157 (830)
55 PF03931 Skp1_POZ: Skp1 family 90.8 1.3 2.7E-05 34.1 7.0 54 147-205 3-59 (62)
56 KOG1230 Protein containing rep 89.9 0.61 1.3E-05 48.9 5.8 38 424-461 99-141 (521)
57 PF01466 Skp1: Skp1 family, di 86.8 0.51 1.1E-05 38.1 2.4 46 211-257 12-59 (78)
58 COG3055 Uncharacterized protei 86.3 1.5 3.3E-05 45.2 6.0 77 422-518 57-141 (381)
59 KOG4152 Host cell transcriptio 86.3 1.2 2.7E-05 47.7 5.5 35 427-461 234-273 (830)
60 PF13964 Kelch_6: Kelch motif 85.8 1.1 2.3E-05 32.5 3.5 34 404-440 12-45 (50)
61 COG5201 SKP1 SCF ubiquitin lig 83.9 3.4 7.3E-05 36.4 6.2 83 153-241 13-120 (158)
62 KOG1778 CREB binding protein/P 83.7 0.67 1.4E-05 47.7 2.1 132 152-291 36-168 (319)
63 PF03089 RAG2: Recombination a 83.6 3.1 6.6E-05 41.8 6.5 87 441-530 153-285 (337)
64 PF13415 Kelch_3: Galactose ox 83.0 1.8 4E-05 31.2 3.7 44 405-450 3-48 (49)
65 KOG0511 Ankyrin repeat protein 83.0 0.35 7.5E-06 50.0 -0.3 84 144-232 149-235 (516)
66 PLN02772 guanylate kinase 76.8 4.3 9.2E-05 43.2 5.4 62 441-525 23-90 (398)
67 PF01344 Kelch_1: Kelch motif; 75.9 2.4 5.1E-05 30.0 2.3 34 404-440 12-45 (47)
68 PF11822 DUF3342: Domain of un 71.6 2.1 4.4E-05 43.9 1.5 55 243-301 71-125 (317)
69 KOG3840 Uncharaterized conserv 65.7 29 0.00062 35.3 8.0 77 153-230 106-186 (438)
70 KOG2715 Uncharacterized conser 65.1 28 0.0006 32.3 7.1 96 142-241 18-120 (210)
71 COG3055 Uncharacterized protei 64.9 5.9 0.00013 41.1 3.1 40 423-462 113-156 (381)
72 PF07707 BACK: BTB And C-termi 62.4 20 0.00043 29.7 5.6 81 217-301 2-101 (103)
73 PHA02629 A-type inclusion body 52.5 12 0.00026 27.3 2.1 21 49-69 14-34 (61)
74 KOG4350 Uncharacterized conser 50.6 21 0.00045 37.7 4.3 112 214-357 148-260 (620)
75 PLN02772 guanylate kinase 47.6 32 0.00069 36.7 5.3 55 404-461 35-95 (398)
76 KOG2723 Uncharacterized conser 47.5 52 0.0011 32.2 6.3 88 149-239 13-106 (221)
77 smart00875 BACK BTB And C-term 33.7 1.2E+02 0.0027 24.4 5.9 25 217-241 2-26 (101)
78 PF00651 BTB: BTB/POZ domain; 30.3 52 0.0011 27.4 3.1 32 244-279 78-110 (111)
79 KOG2437 Muskelin [Signal trans 28.4 68 0.0015 35.0 4.0 46 414-461 347-394 (723)
80 PF07250 Glyoxal_oxid_N: Glyox 22.5 85 0.0018 31.2 3.3 31 433-463 105-139 (243)
81 PF13799 DUF4183: Domain of un 21.0 55 0.0012 26.9 1.3 34 519-552 14-60 (84)
82 PF07250 Glyoxal_oxid_N: Glyox 20.9 84 0.0018 31.3 2.9 26 500-525 106-140 (243)
83 KOG2075 Topoisomerase TOP1-int 20.2 85 0.0018 34.1 2.9 36 243-282 184-219 (521)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7e-64 Score=550.16 Aligned_cols=376 Identities=19% Similarity=0.285 Sum_probs=348.2
Q ss_pred ccccccchhhccCCCCCCCCCeeEEEEE--eEEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHH
Q 008736 124 LNLKQCGEEATGNIDPAWSMDLSTVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLN 201 (555)
Q Consensus 124 ~~~~~~~l~~~l~~~~~~~~~~DV~l~v--~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~ 201 (555)
...|...+.+.++.++..+.+|||+|.+ ++|+|||.||||+||||++||+++++|+.++.|.|. ++++.+++.+++
T Consensus 16 ~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~--~v~~~~l~~ll~ 93 (571)
T KOG4441|consen 16 DPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE--GVDPETLELLLD 93 (571)
T ss_pred cHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe--cCCHHHHHHHHH
Confidence 3446677888899999999999999999 579999999999999999999999999999999998 899999999999
Q ss_pred HHhcCccccCccchHHHHHHHhcccchhhhHHHHHHHHhcCCCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHH
Q 008736 202 FMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYK 281 (555)
Q Consensus 202 fiYtg~l~i~~~~~v~~lL~aAd~l~l~~L~~~C~~~L~~l~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~ 281 (555)
|+|||++.++. +||++||.+|++|||+.+++.|++||.+ +++++||+.+..+|+.| +|.+|.+.+..||.+||.
T Consensus 94 y~Yt~~i~i~~-~nVq~ll~aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~a~~~----~~~~L~~~a~~~i~~~F~ 167 (571)
T KOG4441|consen 94 YAYTGKLEISE-DNVQELLEAASLLQIPEVVDACCEFLES-QLDPSNCLGIRRFAELH----SCTELLEVADEYILQHFA 167 (571)
T ss_pred HhhcceEEech-HhHHHHHHHHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc----CcHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999 99999999999999999 999999999999999999
Q ss_pred HhhccchhhhCCChhhhccccccccccCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhccccCCCCCHHHHhhhccC
Q 008736 282 DISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTC 361 (555)
Q Consensus 282 ~v~~~~~efl~L~~~~L~~LL~sd~L~V~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~~~~ 361 (555)
++.+ +++|++||.++|..||++|+|+|.+|.+||+++++|++|| .+.|..++ +.|+++||||+|++.+|.+.+..
T Consensus 168 ~v~~-~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d---~~~R~~~~-~~ll~~vr~~ll~~~~l~~~v~~ 242 (571)
T KOG4441|consen 168 EVSK-TEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHD---FEEREEHL-PALLEAVRLPLLPPQFLVEIVES 242 (571)
T ss_pred HHhc-cHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcC---HhhHHHHH-HHHHHhcCccCCCHHHHHHHHhh
Confidence 9999 9999999999999999999999999999999999999999 78899999 89999999999999999998887
Q ss_pred CCCC--ChHHHHHHHHHHhhhccCcccchhhhhhcccccCcc-cccceeeecc-------cceeeecccccceeE-----
Q 008736 362 NDFD--PELASKVVLESLFFKAETPYRQRALAAEEANSTYRR-FVERAYKYRP-------VKVVEFELPRQQCVV----- 426 (555)
Q Consensus 362 ~~l~--~~~~~~~l~eAl~~~~~~p~~q~~~~~~~t~~~pR~-~~~~~~~~~~-------~~~ve~ydp~~~~w~----- 426 (555)
.++. .+.|+.++.+|++||. .|.+++.+++++++ ||+ ..+.+++.++ .+.+|+|||.++.|.
T Consensus 243 ~~~~~~~~~c~~~l~ea~~~~~-~~~~~~~~~~~~t~--~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m 319 (571)
T KOG4441|consen 243 EPLIKRDSACRDLLDEAKKYHL-LPQRRPVMQSPRTR--PRRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM 319 (571)
T ss_pred hhhhccCHHHHHHHHHHHHHhh-CcccCccccCCCcc--cCcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC
Confidence 7765 6899999999999999 89999989999887 473 4456666443 357999999999988
Q ss_pred ---------------------------------eccccccceeeccC--CCceeEEEEEECCcEEEEcccCCccccccEE
Q 008736 427 ---------------------------------YLDLKREECAHLFP--AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFH 471 (555)
Q Consensus 427 ---------------------------------~~d~~~~~W~~l~p--~~R~~~~~~vl~g~lYviGG~~~~~~~rs~~ 471 (555)
+|||..++|..++| .+|..+++++++|.||++||++|...+.+++
T Consensus 320 ~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE 399 (571)
T KOG4441|consen 320 PSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVE 399 (571)
T ss_pred CcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEE
Confidence 39999999999998 9999999999999999999999999999999
Q ss_pred EEE-----------------------------eeecccCCC-CcceeeccccceEecC---CCceecCCCCceeecccee
Q 008736 472 CFG-----------------------------LFLGMQEKG-SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKA 518 (555)
Q Consensus 472 ~y~-----------------------------~~gG~~~~~-~l~s~V~~~~~ErYdp---~W~~va~m~~~~~~~g~~~ 518 (555)
||| ++||.++.. .+.++ ||||| +|+.++||+++|..+|+++
T Consensus 400 ~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sv------e~YDP~t~~W~~~~~M~~~R~~~g~a~ 473 (571)
T KOG4441|consen 400 CYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSV------ECYDPETNTWTLIAPMNTRRSGFGVAV 473 (571)
T ss_pred EecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceE------EEEcCCCCceeecCCcccccccceEEE
Confidence 998 468887776 78885 99999 9999999999999999885
Q ss_pred ecc
Q 008736 519 VGY 521 (555)
Q Consensus 519 ~g~ 521 (555)
+++
T Consensus 474 ~~~ 476 (571)
T KOG4441|consen 474 LNG 476 (571)
T ss_pred ECC
Confidence 543
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-57 Score=499.20 Aligned_cols=370 Identities=13% Similarity=0.147 Sum_probs=298.4
Q ss_pred ccccchhhccCCCCCCCCCeeEEEEEe---EEEeehhhccccCHHHHHhhcCCCCCCC-ccEEEEecCCCCHHHHHHHHH
Q 008736 126 LKQCGEEATGNIDPAWSMDLSTVLRVK---TVHISSPILAAKSPFFYKLFSNGMRESE-QRYVTLRIHASEEAALMELLN 201 (555)
Q Consensus 126 ~~~~~l~~~l~~~~~~~~~~DV~l~v~---~f~aHr~ILaa~S~yF~amf~~~~~Es~-~~~I~L~~~~v~~~~f~~lL~ 201 (555)
.|...+++.|+.+++.+.+|||+|.++ +|+|||+||||+|+||++||+++|+|+. +++|+|+ ++++++|+.+|+
T Consensus 7 ~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~ 84 (557)
T PHA02713 7 KHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQ 84 (557)
T ss_pred hhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHHHHHHH
Confidence 355677788999999999999999983 6999999999999999999999999874 7899998 999999999999
Q ss_pred HHhcCccccCccchHHHHHHHhcccchhhhHHHHHHHHhcCCCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHH
Q 008736 202 FMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYK 281 (555)
Q Consensus 202 fiYtg~l~i~~~~~v~~lL~aAd~l~l~~L~~~C~~~L~~l~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~ 281 (555)
|+|||+ ++. +||++||.+|++||++.|++.|++||.+ +++++||+.++.++..+ .+..|.++|.+||.+||.
T Consensus 85 y~Yt~~--i~~-~nv~~ll~aA~~lqi~~l~~~C~~~l~~-~l~~~NCl~i~~~~~~~----~~~~L~~~a~~~i~~~f~ 156 (557)
T PHA02713 85 YLYNRH--ISS-MNVIDVLKCADYLLIDDLVTDCESYIKD-YTNHDTCIYMYHRLYEM----SHIPIVKYIKRMLMSNIP 156 (557)
T ss_pred HhcCCC--CCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHh-hCCccchHHHHHHHHhc----cchHHHHHHHHHHHHHHH
Confidence 999998 567 8999999999999999999999999999 89999999999877766 677899999999999999
Q ss_pred HhhccchhhhCCChhhhcccccccc-ccCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhccccCCCCCHHHHhhhcc
Q 008736 282 DISKFQEEVLNLPLAGIEAVLASDD-LQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLT 360 (555)
Q Consensus 282 ~v~~~~~efl~L~~~~L~~LL~sd~-L~V~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~~~ 360 (555)
++.+ +++|++|+.++|.+||++|+ |+|.+|++||+++++|++|+ .++|.+ + .+||++||||+|++..+.. +.
T Consensus 157 ~v~~-~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d---~~~r~~-~-~~ll~~VR~~~l~~~~~~~-~~ 229 (557)
T PHA02713 157 TLIT-TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYN---YITEEQ-L-LCILSCIDIQNLDKKSRLL-LY 229 (557)
T ss_pred HHhC-ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcC---HHHHHH-H-hhhHhhhhHhhcchhhhhh-hc
Confidence 9999 99999999999999999988 79999999999999999998 655554 5 5999999999999998874 33
Q ss_pred CCCCC--ChHHHHHHHHHHhhhccCcccchhhhh----------------hc--------ccccCcccc------cceee
Q 008736 361 CNDFD--PELASKVVLESLFFKAETPYRQRALAA----------------EE--------ANSTYRRFV------ERAYK 408 (555)
Q Consensus 361 ~~~l~--~~~~~~~l~eAl~~~~~~p~~q~~~~~----------------~~--------t~~~pR~~~------~~~~~ 408 (555)
++++. .+.|.+++.+|+.++...| ++..+.. +. ..+.+|... ..+|+
T Consensus 230 ~~~~i~~~~~c~~~l~~a~~~~~~~~-r~~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYv 308 (557)
T PHA02713 230 SNKTINMYPSCIQFLLDNKQNRNIIP-RQLCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIII 308 (557)
T ss_pred chHHHHhhHHHHHHHhhhhhhcccCC-cceEEEEecCccccCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEE
Confidence 34443 6789999999987653112 1110000 00 000111111 12344
Q ss_pred ecccceeeecccccceeEeccccccceeeccC--CCceeEEEEEECCcEEEEcccCCccccccEEEEE------------
Q 008736 409 YRPVKVVEFELPRQQCVVYLDLKREECAHLFP--AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG------------ 474 (555)
Q Consensus 409 ~~~~~~ve~ydp~~~~w~~~d~~~~~W~~l~p--~~R~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~------------ 474 (555)
.|+... .....+...+|||.++.|..++| .+|.++++++++|+||++||.++....+++++||
T Consensus 309 iGG~~~---~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m 385 (557)
T PHA02713 309 AGGYNF---NNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDM 385 (557)
T ss_pred EcCCCC---CCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCC
Confidence 343210 01123445568888889998887 7899999999999999999997766678899998
Q ss_pred -----------------eeecccCCC------------------CcceeeccccceEecC---CCceecCCCCceeeccc
Q 008736 475 -----------------LFLGMQEKG------------------SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGG 516 (555)
Q Consensus 475 -----------------~~gG~~~~~------------------~l~s~V~~~~~ErYdp---~W~~va~m~~~~~~~g~ 516 (555)
++||.++.. .+++ | |+||| +|+.++||+.+|..+|+
T Consensus 386 p~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~-v-----e~YDP~td~W~~v~~m~~~r~~~~~ 459 (557)
T PHA02713 386 PIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNK-V-----IRYDTVNNIWETLPNFWTGTIRPGV 459 (557)
T ss_pred CcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccce-E-----EEECCCCCeEeecCCCCcccccCcE
Confidence 467765421 2345 4 99999 99999999999999988
Q ss_pred eeeccc
Q 008736 517 KAVGYR 522 (555)
Q Consensus 517 ~~~g~~ 522 (555)
++++++
T Consensus 460 ~~~~~~ 465 (557)
T PHA02713 460 VSHKDD 465 (557)
T ss_pred EEECCE
Confidence 866643
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.5e-52 Score=455.23 Aligned_cols=347 Identities=14% Similarity=0.113 Sum_probs=269.1
Q ss_pred CCCCCCCCeeEEEEE-eEEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHhcCccccCccch
Q 008736 137 IDPAWSMDLSTVLRV-KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTA 215 (555)
Q Consensus 137 ~~~~~~~~~DV~l~v-~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~ 215 (555)
.++..+.+|||++.+ ++|+|||+|||++|||||+||+++|+|+.+ +|++...++++++|+.+|+|+|||++.++. +|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~-~n 92 (480)
T PHA02790 15 ALSMTKKFKTIIEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS-HN 92 (480)
T ss_pred HHHhhhhhceEEEEcCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEec-cc
Confidence 366678899999998 579999999999999999999999999965 566532389999999999999999999999 99
Q ss_pred HHHHHHHhcccchhhhHHHHHHHHhcCCCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHHHhhccc--hhhhCC
Q 008736 216 LLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQ--EEVLNL 293 (555)
Q Consensus 216 v~~lL~aAd~l~l~~L~~~C~~~L~~l~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~--~efl~L 293 (555)
|++||.||++||++.+++.|++||.+ +|+++||+.++.+|+.| ++++|.++|.+||.+||.++.+ + ++|+.|
T Consensus 93 V~~ll~aA~~Lqi~~v~~~C~~fL~~-~l~~~NCl~i~~~A~~y----~~~~L~~~a~~fi~~nF~~v~~-~~~~ef~~L 166 (480)
T PHA02790 93 VVNLLRASILTSVEFIIYTCINFILR-DFRKEYCVECYMMGIEY----GLSNLLCHTKDFIAKHFLELED-DIIDNFDYL 166 (480)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHh-hCCcchHHHHHHHHHHh----CHHHHHHHHHHHHHHhHHHHhc-ccchhhhhC
Confidence 99999999999999999999999999 99999999999999999 9999999999999999999998 6 899999
Q ss_pred ChhhhccccccccccCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhcc-ccCCCCCHHHHhhhccCCCCCChHHHHH
Q 008736 294 PLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRL-IRFPYMTCRKLKKVLTCNDFDPELASKV 372 (555)
Q Consensus 294 ~~~~L~~LL~sd~L~V~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~-VRf~lls~~~L~~~~~~~~l~~~~~~~~ 372 (555)
|. .+||++|+|+|.+|++||+++++|++|+ .+|..++ .+++++ ||+++|++..+..+ ..+
T Consensus 167 ~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~----~~~~~~l-~~~vr~~ir~~~l~~~~l~~~-----------~~~ 227 (480)
T PHA02790 167 SM---KLILESDELNVPDEDYVVDFVIKWYMKR----RNRLGNL-LLLIKNVIRSNYLSPRGINNV-----------KWI 227 (480)
T ss_pred CH---HHhcccccCCCccHHHHHHHHHHHHHhh----HHHHHHH-HHHHHhcCChhhCCHHHHHHH-----------HHH
Confidence 96 6899999999999999999999999986 3455555 466666 89999998887542 234
Q ss_pred HHHHHhhhccC-cccc---hhhh-hhccc-ccC-------cccccceeeecc------cceeeecccccceeE-------
Q 008736 373 VLESLFFKAET-PYRQ---RALA-AEEAN-STY-------RRFVERAYKYRP------VKVVEFELPRQQCVV------- 426 (555)
Q Consensus 373 l~eAl~~~~~~-p~~q---~~~~-~~~t~-~~p-------R~~~~~~~~~~~------~~~ve~ydp~~~~w~------- 426 (555)
+.++..++... |... +... ...+. ..+ ......+|+.++ .+.+++|||.+++|.
T Consensus 228 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~ 307 (480)
T PHA02790 228 LDCTKIFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNS 307 (480)
T ss_pred HHHHHHhhccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCc
Confidence 44555444311 1110 0000 00000 000 001124566444 246888888888887
Q ss_pred ---------------------------eccccccceeeccC--CCceeEEEEEECCcEEEEcccCCccccccEEEEEee-
Q 008736 427 ---------------------------YLDLKREECAHLFP--AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLF- 476 (555)
Q Consensus 427 ---------------------------~~d~~~~~W~~l~p--~~R~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~~~- 476 (555)
.|||.+++|..++| .+|.++++++++|+||++||.++. .+++++||+-
T Consensus 308 ~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~ 385 (480)
T PHA02790 308 PRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNH 385 (480)
T ss_pred hhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCC
Confidence 27888888888877 678888888888888888887543 3567777731
Q ss_pred ---------------------eccc---CCCCcceeeccccceEecC---CCceecCCCCceeeccceeeccc
Q 008736 477 ---------------------LGMQ---EKGSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYR 522 (555)
Q Consensus 477 ---------------------gG~~---~~~~l~s~V~~~~~ErYdp---~W~~va~m~~~~~~~g~~~~g~~ 522 (555)
||.- | | . + |+||| +|+.+++|+.+|..+|+++++++
T Consensus 386 ~~W~~~~~m~~~r~~~~~~~~~~~IYv~G-G---~-~-----e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~ 448 (480)
T PHA02790 386 DQWQFGPSTYYPHYKSCALVFGRRLFLVG-R---N-A-----EFYCESSNTWTLIDDPIYPRDNPELIIVDNK 448 (480)
T ss_pred CEEEeCCCCCCccccceEEEECCEEEEEC-C---c-e-----EEecCCCCcEeEcCCCCCCccccEEEEECCE
Confidence 1110 1 0 2 2 88888 88888888888888887766654
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.8e-50 Score=443.54 Aligned_cols=354 Identities=12% Similarity=0.180 Sum_probs=285.7
Q ss_pred CCCCeeEEEEE----eEEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHhcCccccCccchH
Q 008736 141 WSMDLSTVLRV----KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTAL 216 (555)
Q Consensus 141 ~~~~~DV~l~v----~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v 216 (555)
.+.+|||+|.+ ++|+|||.|||++|+||++||+++|+ +.+|.|+ + ++++|+.+|+|+|||++.++. +++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~i~~-~~~ 78 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKINITS-NNV 78 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceEEcH-HHH
Confidence 56799999987 57999999999999999999999998 5788887 6 999999999999999999999 899
Q ss_pred HHHHHHhcccchhhhHHHHHHHHhcCCCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHHHhhccchhhhCCChh
Q 008736 217 LDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLA 296 (555)
Q Consensus 217 ~~lL~aAd~l~l~~L~~~C~~~L~~l~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~efl~L~~~ 296 (555)
++||.+|++||++.|++.|++||.+ .++++||+.++.+|..| ++..|+++|.+||.+||.++.+ +++|++|+.+
T Consensus 79 ~~ll~~A~~l~~~~l~~~C~~~l~~-~l~~~nc~~~~~~a~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~l~~~ 152 (534)
T PHA03098 79 KDILSIANYLIIDFLINLCINYIIK-IIDDNNCIDIYRFSFFY----GCKKLYSAAYNYIRNNIELIYN-DPDFIYLSKN 152 (534)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHH-hCCHhHHHHHHHHHHHc----CcHHHHHHHHHHHHHHHHHHhc-CchhhcCCHH
Confidence 9999999999999999999999999 89999999999999999 9999999999999999999999 9999999999
Q ss_pred hhccccccccccCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhccccCCCCCHHHHhhhcc------CCCCC-ChHH
Q 008736 297 GIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLT------CNDFD-PELA 369 (555)
Q Consensus 297 ~L~~LL~sd~L~V~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~~~------~~~l~-~~~~ 369 (555)
.|..||++|+|+|.+|++||++|++|++|+ .++|.+++ ++||++||||+|++++|.+++. .+.+. ++.|
T Consensus 153 ~l~~ll~~~~L~v~~E~~v~~av~~W~~~~---~~~r~~~~-~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 228 (534)
T PHA03098 153 ELIKILSDDKLNVSSEDVVLEIIIKWLTSK---KNNKYKDI-CLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRC 228 (534)
T ss_pred HHHHHhcCCCcCcCCHHHHHHHHHHHHhcC---hhhhHhHH-HHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccc
Confidence 999999999999999999999999999998 78898988 8999999999999999998764 34443 5678
Q ss_pred HHHHHHHHhhhccC-cccch---hh----------------hhhccc-----ccCcccc-------cceeeecccceeee
Q 008736 370 SKVVLESLFFKAET-PYRQR---AL----------------AAEEAN-----STYRRFV-------ERAYKYRPVKVVEF 417 (555)
Q Consensus 370 ~~~l~eAl~~~~~~-p~~q~---~~----------------~~~~t~-----~~pR~~~-------~~~~~~~~~~~ve~ 417 (555)
...+.++..++... |.... .+ ..+..+ ..|+... ..+|+.++...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~--- 305 (534)
T PHA03098 229 IKIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNK--- 305 (534)
T ss_pred hHHHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhcccccCccccccceEEEECCEEEEECCCcC---
Confidence 88888887654201 11000 00 000000 0011111 23455554321
Q ss_pred cccccceeEeccccccceeeccC--CCceeEEEEEECCcEEEEcccCCccccccEEEEE---------------------
Q 008736 418 ELPRQQCVVYLDLKREECAHLFP--AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG--------------------- 474 (555)
Q Consensus 418 ydp~~~~w~~~d~~~~~W~~l~p--~~R~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~--------------------- 474 (555)
.....+....||+.+++|..+++ .+|.++++++++|++|++||..+....+++++|+
T Consensus 306 ~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~ 385 (534)
T PHA03098 306 NNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCV 385 (534)
T ss_pred CCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceE
Confidence 11123456678888888888876 6899999999999999999987655566777776
Q ss_pred --------eeecccCCC-CcceeeccccceEecC---CCceecCCCCceeeccceeec
Q 008736 475 --------LFLGMQEKG-SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVG 520 (555)
Q Consensus 475 --------~~gG~~~~~-~l~s~V~~~~~ErYdp---~W~~va~m~~~~~~~g~~~~g 520 (555)
++||....+ .+++ | |+||| +|+.+++|+.+|..+++++++
T Consensus 386 ~~~~~~iYv~GG~~~~~~~~~~-v-----~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 437 (534)
T PHA03098 386 VNVNNLIYVIGGISKNDELLKT-V-----ECFSLNTNKWSKGSPLPISHYGGCAIYHD 437 (534)
T ss_pred EEECCEEEEECCcCCCCcccce-E-----EEEeCCCCeeeecCCCCccccCceEEEEC
Confidence 456754333 3455 4 99999 899999999999877665433
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.97 E-value=1e-31 Score=267.65 Aligned_cols=233 Identities=20% Similarity=0.279 Sum_probs=205.5
Q ss_pred chhhccCCCCCCCCCeeEEEEE--eEEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHhcCc
Q 008736 130 GEEATGNIDPAWSMDLSTVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSST 207 (555)
Q Consensus 130 ~l~~~l~~~~~~~~~~DV~l~v--~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~ 207 (555)
.+.+.+.........+||++.+ ++|+|||+|||++|.|||+|+.++|.|+.+..|.|+ +...++|+.+|+|||||+
T Consensus 30 ~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq--~t~~eAF~~lLrYiYtg~ 107 (620)
T KOG4350|consen 30 NFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQ--ETNSEAFRALLRYIYTGK 107 (620)
T ss_pred chhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccc--cccHHHHHHHHHHHhhcc
Confidence 3444444555566789999999 469999999999999999999999999999999998 777999999999999999
Q ss_pred cccCcc--chHHHHHHHhcccchhhhHHHHHHHHhcCCCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHHHhhc
Q 008736 208 LSTTTP--TALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISK 285 (555)
Q Consensus 208 l~i~~~--~~v~~lL~aAd~l~l~~L~~~C~~~L~~l~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~~v~~ 285 (555)
+.++.. +.+++.|.+|++|++..|.....+||++ -+..+|++.++..|..| ++++|.+.|+.|.-+|..+++.
T Consensus 108 ~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~-iL~~~NvCmifdaA~ly----~l~~Lt~~C~mfmDrnA~~lL~ 182 (620)
T KOG4350|consen 108 IDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKE-ILKNENVCMIFDAAYLY----QLTDLTDYCMMFMDRNADQLLE 182 (620)
T ss_pred eecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHcccceeeeeeHHHHh----cchHHHHHHHHHHhcCHHhhhc
Confidence 987542 6789999999999999999999999999 69999999999999999 8999999999999999999999
Q ss_pred cchhhhCCChhhhccccccccccCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhccccCCCCCHHHHhhhccCCCCC
Q 008736 286 FQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFD 365 (555)
Q Consensus 286 ~~~efl~L~~~~L~~LL~sd~L~V~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~~~~~~l~ 365 (555)
.+.|..|+.+.|.++|.+|... +.|.++|.||.+|-+++ . ... . ..|++.||+|+|+...|.+++.+..+.
T Consensus 183 -~~sFn~LSk~sL~e~l~RDsFf-ApE~~IFlAv~~W~~~N---s--ke~-~-k~~~~~VRLPLm~lteLLnvVRPsGll 253 (620)
T KOG4350|consen 183 -DPSFNRLSKDSLKELLARDSFF-APELKIFLAVRSWHQNN---S--KEA-S-KVLLELVRLPLMTLTELLNVVRPSGLL 253 (620)
T ss_pred -CcchhhhhHHHHHHHHhhhccc-chHHHHHHHHHHHHhcC---c--hhh-H-HHHHHHHhhhhccHHHHHhccCcccCc
Confidence 9999999999999999999885 68999999999999998 2 222 2 579999999999999999999998886
Q ss_pred ChHHHHHHHHHHhhhc
Q 008736 366 PELASKVVLESLFFKA 381 (555)
Q Consensus 366 ~~~~~~~l~eAl~~~~ 381 (555)
.+ +.+++|+.-..
T Consensus 254 sp---D~iLDAI~vrs 266 (620)
T KOG4350|consen 254 SP---DTILDAIEVRS 266 (620)
T ss_pred CH---HHHHHHHHhhc
Confidence 44 34666665443
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.90 E-value=1e-23 Score=215.92 Aligned_cols=220 Identities=23% Similarity=0.350 Sum_probs=193.0
Q ss_pred cCCCCCCCCCeeEEEEEe-------EEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHhcCc
Q 008736 135 GNIDPAWSMDLSTVLRVK-------TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSST 207 (555)
Q Consensus 135 l~~~~~~~~~~DV~l~v~-------~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~ 207 (555)
.-...++...+|+.+.++ .|||||.|||..|.+|.+||++++.|....+|.++ ++++.+|..+|+|||++.
T Consensus 105 ~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lp--dvepaaFl~~L~flYsde 182 (521)
T KOG2075|consen 105 QAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLP--DVEPAAFLAFLRFLYSDE 182 (521)
T ss_pred hHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecC--CcChhHhHHHHHHHhcch
Confidence 344555666778777773 49999999999999999999999999977888887 999999999999999999
Q ss_pred cccCccchHHHHHHHhcccchhhhHHHHHHHHhcCCCChhhHHHHHhc-cchhhhhhchHHHHHHHHHHHHHhHHHhhcc
Q 008736 208 LSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDL-PSSVLMADAVQPLTDTAKQFLAARYKDISKF 286 (555)
Q Consensus 208 l~i~~~~~v~~lL~aAd~l~l~~L~~~C~~~L~~l~l~~~n~~~~l~~-a~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~ 286 (555)
+.+.. ++++.+|.+|++|.++.|.+.|.+||+. .+.+.|.+..+-- |..+ .-++|.+.|++-|..+|+..+.
T Consensus 183 v~~~~-dtvi~tl~~AkKY~VpaLer~CVkflr~-~l~~~naf~~L~q~A~lf----~ep~Li~~c~e~id~~~~~al~- 255 (521)
T KOG2075|consen 183 VKLAA-DTVITTLYAAKKYLVPALERQCVKFLRK-NLMADNAFLELFQRAKLF----DEPSLISICLEVIDKSFEDALT- 255 (521)
T ss_pred hhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhh----cCHHHHHHHHHHhhhHHHhhhC-
Confidence 99998 9999999999999999999999999999 7888887765544 6666 7899999999999999999999
Q ss_pred chhhhCCC--hhhhccccccccccCCCHHHHHHHHHHHHhhcCC------ChHHHHHHHHHHhhccccCCCCCHHHHhhh
Q 008736 287 QEEVLNLP--LAGIEAVLASDDLQIASEDAVYDFALKWARTHYP------KLEERREILGSRLGRLIRFPYMTCRKLKKV 358 (555)
Q Consensus 287 ~~efl~L~--~~~L~~LL~sd~L~V~sE~~V~~av~~Wi~~~~~------~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~ 358 (555)
.+.|.... .+.++++|+++.|.+ +|..+|+|+++|+...+. +.+.+++.+ .+.+..||||+|..+.+..-
T Consensus 256 ~EGf~did~~~dt~~evl~r~~l~~-~e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl-~~~l~lirfp~m~~Eefa~~ 333 (521)
T KOG2075|consen 256 PEGFCDIDSTRDTYEEVLRRDTLEA-REFRLFEAALKWAEAECQRSGGPVNGQNKRKVL-GRALSLIRFPFMNIEEFARG 333 (521)
T ss_pred ccceeehhhHHHHHHHHHhhcccch-hHHHHHHHHHhhccCcchhhcCCCCccchhhhh-hheeeeecccccchhhhccC
Confidence 99999988 999999999999997 499999999999987652 244567777 79999999999999999877
Q ss_pred ccCCCCC
Q 008736 359 LTCNDFD 365 (555)
Q Consensus 359 ~~~~~l~ 365 (555)
+++.++.
T Consensus 334 ~e~sgIl 340 (521)
T KOG2075|consen 334 VEQSGIL 340 (521)
T ss_pred ccccCCc
Confidence 6666663
No 7
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.78 E-value=7.2e-19 Score=176.52 Aligned_cols=176 Identities=17% Similarity=0.295 Sum_probs=165.6
Q ss_pred CCCCeeEEEEE--eEEEeehhhccccCHHHHHhhcCCCCCCCccEEEEec--CCCCHHHHHHHHHHHhcCccccCccchH
Q 008736 141 WSMDLSTVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRI--HASEEAALMELLNFMYSSTLSTTTPTAL 216 (555)
Q Consensus 141 ~~~~~DV~l~v--~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~--~~v~~~~f~~lL~fiYtg~l~i~~~~~v 216 (555)
.+..+||++.+ .+.+.||.-|. .|+||++||.|.|+|++++.|.|.| +.++..+|..++.-+|.+++.|.. +.|
T Consensus 66 q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l-~dv 143 (488)
T KOG4682|consen 66 QGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKL-SDV 143 (488)
T ss_pred cCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccH-HHH
Confidence 67789999988 68999999996 6899999999999999999888775 679999999999999999999999 899
Q ss_pred HHHHHHhcccchhhhHHHHHHHHhcCCCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHHHhhccchhhhCCChh
Q 008736 217 LDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLA 296 (555)
Q Consensus 217 ~~lL~aAd~l~l~~L~~~C~~~L~~l~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~efl~L~~~ 296 (555)
..+|.+|.+++++.|.+.|.+-+.+ .++++|++.+++.+..| +.+.+++.|++++..|+-.+.. ..-+.+++.+
T Consensus 144 ~gvlAaA~~lqldgl~qrC~evMie-~lspkta~~yYea~ckY----gle~vk~kc~ewl~~nl~~i~~-~q~l~ei~~~ 217 (488)
T KOG4682|consen 144 VGVLAAACLLQLDGLIQRCGEVMIE-TLSPKTACGYYEAACKY----GLESVKKKCLEWLLNNLMTIQN-VQLLKEISIN 217 (488)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-hcChhhhhHhhhhhhhh----hhHHHHHHHHHHHHHhhHhhhh-HHHHHhcCHH
Confidence 9999999999999999999999999 89999999999999999 9999999999999999999988 7788899999
Q ss_pred hhccccccccccCCC-HHHHHHHHHHHHh
Q 008736 297 GIEAVLASDDLQIAS-EDAVYDFALKWAR 324 (555)
Q Consensus 297 ~L~~LL~sd~L~V~s-E~~V~~av~~Wi~ 324 (555)
.+..+|.|++|-|-+ |..+|..+..|+-
T Consensus 218 Lm~~ll~SpnLfvmq~EfdLyttlk~Wmf 246 (488)
T KOG4682|consen 218 LMKQLLGSPNLFVMQVEFDLYTTLKKWMF 246 (488)
T ss_pred HHHHHhCCCCeEEEEeeehHHHHHHHHHH
Confidence 999999999998877 9999999999974
No 8
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.72 E-value=4.1e-18 Score=146.18 Aligned_cols=103 Identities=32% Similarity=0.612 Sum_probs=93.2
Q ss_pred HHHHHhccchhhhhhchHHHHHHHHHHHHHhHHHhhccchhhhCCChhhhccccccccccCCCHHHHHHHHHHHHhhcCC
Q 008736 249 ALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYP 328 (555)
Q Consensus 249 ~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~efl~L~~~~L~~LL~sd~L~V~sE~~V~~av~~Wi~~~~~ 328 (555)
|+.++.+|..| ++.+|.++|.+||.+||.++.+ +++|.+||.+.+..||++++|+|.+|.+||+++++|++++
T Consensus 1 C~~i~~~A~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~-- 73 (103)
T PF07707_consen 1 CLSIYRLAEKY----GLEELAEACLRFIAKNFNEVSK-SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN-- 73 (103)
T ss_dssp HHHHHHHHHHT----T-HHHHHHHHHHHHHTHHHHTT-SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT--
T ss_pred ChhHHHHHHHc----ChHHHHHHHHHHHHHHHHHHcc-chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC--
Confidence 78999999999 9999999999999999999999 9999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHhhccccCCCCCHHHHhhhcc
Q 008736 329 KLEERREILGSRLGRLIRFPYMTCRKLKKVLT 360 (555)
Q Consensus 329 ~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~~~ 360 (555)
.++|.+++ ..|+++||||+|++++|.++++
T Consensus 74 -~~~r~~~~-~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 74 -PENREEHL-KELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp -HHHHTTTH-HHHHCCCHHHCT-HHHHHHCCT
T ss_pred -HHHHHHHH-HHHHHhCCcccCCHHHHHHHHC
Confidence 77898888 8999999999999999998753
No 9
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.66 E-value=5.5e-17 Score=140.88 Aligned_cols=99 Identities=25% Similarity=0.452 Sum_probs=86.7
Q ss_pred CCCCCeeEEEEEe---EEEeehhhccccCHHHHHhhcCC-CCCCCccEEEEecCCCCHHHHHHHHHHHhcCccccC-ccc
Q 008736 140 AWSMDLSTVLRVK---TVHISSPILAAKSPFFYKLFSNG-MRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTT-TPT 214 (555)
Q Consensus 140 ~~~~~~DV~l~v~---~f~aHr~ILaa~S~yF~amf~~~-~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~-~~~ 214 (555)
+.+.++|++|.++ +|+|||.||+++|+||++||.+. +.+.....|.++ ++++++|+.+++|+|+|++.++ . +
T Consensus 6 ~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~Y~~~~~~~~~-~ 82 (111)
T PF00651_consen 6 NSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP--DVSPEAFEAFLEYMYTGEIEINSD-E 82 (111)
T ss_dssp HHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET--TSCHHHHHHHHHHHHHSEEEEE-T-T
T ss_pred cCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc--cccccccccccccccCCcccCCHH-H
Confidence 3567899999995 69999999999999999999997 566665667776 9999999999999999999998 7 8
Q ss_pred hHHHHHHHhcccchhhhHHHHHHHHhc
Q 008736 215 ALLDVLMAADKFEVASCMRYCSRLLRN 241 (555)
Q Consensus 215 ~v~~lL~aAd~l~l~~L~~~C~~~L~~ 241 (555)
++.+++.+|++|+++.|++.|.++|.+
T Consensus 83 ~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 83 NVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp THHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 999999999999999999999999975
No 10
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.63 E-value=1e-15 Score=130.30 Aligned_cols=99 Identities=28% Similarity=0.512 Sum_probs=90.5
Q ss_pred HHHHHhccchhhhhhchHHHHHHHHHHHHHhHHHhhccchhhhCCChhhhccccccccccCCCHHHHHHHHHHHHhhcCC
Q 008736 249 ALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYP 328 (555)
Q Consensus 249 ~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~efl~L~~~~L~~LL~sd~L~V~sE~~V~~av~~Wi~~~~~ 328 (555)
|+.++.+|..| ++..|.+.|.+||.+||..+.+ +++|.+||.+.+..||++++|+|.+|..||+++++|++++
T Consensus 1 c~~i~~~a~~~----~~~~L~~~~~~~i~~nf~~~~~-~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~-- 73 (101)
T smart00875 1 CLGIRRFAELY----GLEELLEKALRFILKNFLEVAQ-SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD-- 73 (101)
T ss_pred CHhHHHHHHHh----ChHHHHHHHHHHHHHHHHHHhc-CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC--
Confidence 56778888888 8999999999999999999999 8999999999999999999999989999999999999998
Q ss_pred ChHHHHHHHHHHhhccccCCCCCHHHHhh
Q 008736 329 KLEERREILGSRLGRLIRFPYMTCRKLKK 357 (555)
Q Consensus 329 ~~~~R~~~l~~~Ll~~VRf~lls~~~L~~ 357 (555)
...|. ++ ..|+++||||+|++..|..
T Consensus 74 -~~~~~-~~-~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 -PERRR-HL-PELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred -HHHHH-HH-HHHHHhCCCCCCCHHHHHh
Confidence 55554 66 7999999999999998865
No 11
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.63 E-value=3.5e-16 Score=143.67 Aligned_cols=158 Identities=15% Similarity=0.294 Sum_probs=134.3
Q ss_pred CCCCCCeeEEEEEe-----EEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHhcCccccCcc
Q 008736 139 PAWSMDLSTVLRVK-----TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTP 213 (555)
Q Consensus 139 ~~~~~~~DV~l~v~-----~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~ 213 (555)
-.+..++|+.+.++ .++|||.||||+|++.+ |.++-.| +..+..+ +++++++|...++||||+++.+...
T Consensus 61 ~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~--dDad~Ea~~t~iRWIYTDEidfk~d 135 (280)
T KOG4591|consen 61 LEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDL--DDADFEAFHTAIRWIYTDEIDFKED 135 (280)
T ss_pred hhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcc--cccCHHHHHHhheeeeccccccccc
Confidence 34677999999983 59999999999999875 2332222 2233344 4999999999999999999998652
Q ss_pred -chHHHHHHHhcccchhhhHHHHHHHHhcCCCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHHHhhccchhhhC
Q 008736 214 -TALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLN 292 (555)
Q Consensus 214 -~~v~~lL~aAd~l~l~~L~~~C~~~L~~l~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~efl~ 292 (555)
..+.++.++|+.|+++-|++.|++-+.. -++++||+.++++|+.. +...|...|-..|+.++..+-. .+|.+
T Consensus 136 D~~L~el~e~An~FqLe~Lke~C~k~l~a-~l~V~NCIk~Ye~AEe~----n~~qL~n~~~eiIA~~W~dL~~--a~Faq 208 (280)
T KOG4591|consen 136 DEFLLELCELANRFQLELLKERCEKGLGA-LLHVDNCIKFYEFAEEL----NARQLMNVAAEIIAGAWDDLGK--ADFAQ 208 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHHh----hHHHHHHHHHHHHHhhccccCh--HHHHh
Confidence 4578999999999999999999999999 69999999999999988 8899999999999999999876 89999
Q ss_pred CChhhhcccccccccc
Q 008736 293 LPLAGIEAVLASDDLQ 308 (555)
Q Consensus 293 L~~~~L~~LL~sd~L~ 308 (555)
++...|..++.+..-+
T Consensus 209 Ms~aLLYklId~kTe~ 224 (280)
T KOG4591|consen 209 MSAALLYKLIDGKTEN 224 (280)
T ss_pred ccHHHHHHHHcCCCcc
Confidence 9999999999887543
No 12
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.56 E-value=7.4e-15 Score=121.14 Aligned_cols=88 Identities=27% Similarity=0.474 Sum_probs=80.8
Q ss_pred eEEEEE--eEEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHhcCccccCccchHHHHHHHh
Q 008736 146 STVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAA 223 (555)
Q Consensus 146 DV~l~v--~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aA 223 (555)
|+++.+ +.|++||.+|+++|+||++||.+++.++....+.++ +.++.+|+.+|+|+|++++.++. .++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~--~~~~~~f~~~l~~ly~~~~~~~~-~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLD--DVSPEDFRALLEFLYTGKLDLPE-ENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEec--CCCHHHHHHHHHeecCceeecCH-HHHHHHHHHH
Confidence 466666 579999999999999999999998888778888887 89999999999999999999998 7999999999
Q ss_pred cccchhhhHHHHH
Q 008736 224 DKFEVASCMRYCS 236 (555)
Q Consensus 224 d~l~l~~L~~~C~ 236 (555)
++|+++.|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999984
No 13
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.52 E-value=2.3e-14 Score=158.53 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=95.7
Q ss_pred cceeeecccccceeE-------------------------------------eccccccceeeccC--CCceeEEEEEEC
Q 008736 412 VKVVEFELPRQQCVV-------------------------------------YLDLKREECAHLFP--AGRIYSQAFHLG 452 (555)
Q Consensus 412 ~~~ve~ydp~~~~w~-------------------------------------~~d~~~~~W~~l~p--~~R~~~~~~vl~ 452 (555)
++.+|+|||.++.|. +|||.+++|+.++| .+|..+|+++++
T Consensus 348 l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~ 427 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLG 427 (571)
T ss_pred cceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEEC
Confidence 357999999999999 49999999999998 789999999999
Q ss_pred CcEEEEcccCCcc-ccccEEEEE-----------------------------eeecccCCCCcceeeccccceEecC---
Q 008736 453 GQGFFLSAHCNMD-QQSSFHCFG-----------------------------LFLGMQEKGSVSFAVDYEFAARIKP--- 499 (555)
Q Consensus 453 g~lYviGG~~~~~-~~rs~~~y~-----------------------------~~gG~~~~~~l~s~V~~~~~ErYdp--- 499 (555)
|+||++||.++.. .+++++||| ++||.++...++++ |+|||
T Consensus 428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~V------E~ydp~~~ 501 (571)
T KOG4441|consen 428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSV------ERYDPETN 501 (571)
T ss_pred CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceE------EEEcCCCC
Confidence 9999999999887 899999998 57888886667774 99999
Q ss_pred CCceecCCCCceeeccceeeccc
Q 008736 500 TEEYVSKYKGNYTFTGGKAVGYR 522 (555)
Q Consensus 500 ~W~~va~m~~~~~~~g~~~~g~~ 522 (555)
+|+.+++|+.+|+.+|++++|++
T Consensus 502 ~W~~v~~m~~~rs~~g~~~~~~~ 524 (571)
T KOG4441|consen 502 QWTMVAPMTSPRSAVGVVVLGGK 524 (571)
T ss_pred ceeEcccCccccccccEEEECCE
Confidence 99999999999999999988876
No 14
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.48 E-value=3.8e-14 Score=152.94 Aligned_cols=139 Identities=14% Similarity=0.244 Sum_probs=117.8
Q ss_pred CCCCCeeEEEEEe-EEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHh-cCccccCc----c
Q 008736 140 AWSMDLSTVLRVK-TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMY-SSTLSTTT----P 213 (555)
Q Consensus 140 ~~~~~~DV~l~v~-~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiY-tg~l~i~~----~ 213 (555)
....+|+|++.-+ .++|||++|+||++||..||...|.|+.. |++....+..+.++.+|+|+| +++..+-. .
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~ 785 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKES 785 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHHHHhccchh
Confidence 3444566666654 59999999999999999999999998876 444433677999999999999 45544321 1
Q ss_pred chHHHHHHHhcccchhhhHHHHHHHHhcCCCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHHHhhc
Q 008736 214 TALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISK 285 (555)
Q Consensus 214 ~~v~~lL~aAd~l~l~~L~~~C~~~L~~l~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~~v~~ 285 (555)
+-+.++|.+||.|-+.+|+..|+.-|.+ .++..||-.++++|.+| ++.+|+..|++||..|...++.
T Consensus 786 dF~~~il~iaDqlli~~Lk~Ice~~ll~-kl~lk~~~~llefaamY----~ak~L~~~C~dfic~N~~~~Le 852 (1267)
T KOG0783|consen 786 DFMFEILSIADQLLILELKSICEQSLLR-KLNLKTLPTLLEFAAMY----HAKELYSRCIDFICHNIEFFLE 852 (1267)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh-HhcccchHHHHHHHHHh----hHHHHHHHHHHHHHHhHHHHHH
Confidence 5688999999999999999999999999 89999999999999999 9999999999999999988875
No 15
>PHA02713 hypothetical protein; Provisional
Probab=99.36 E-value=1.7e-11 Score=136.07 Aligned_cols=247 Identities=9% Similarity=0.000 Sum_probs=143.6
Q ss_pred HHHHHHHhcCCCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHHHhhccchhhhCCChhhhccccccccccCCCH
Q 008736 233 RYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASE 312 (555)
Q Consensus 233 ~~C~~~L~~l~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~efl~L~~~~L~~LL~sd~L~V~sE 312 (555)
+...+|+=.-.++.+|+..++..|..+ ..+.|++.|.+|+.+++..- + .-++ ..++.. .. .+
T Consensus 80 ~~ll~y~Yt~~i~~~nv~~ll~aA~~l----qi~~l~~~C~~~l~~~l~~~-N-Cl~i--------~~~~~~--~~--~~ 141 (557)
T PHA02713 80 KNIVQYLYNRHISSMNVIDVLKCADYL----LIDDLVTDCESYIKDYTNHD-T-CIYM--------YHRLYE--MS--HI 141 (557)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHH----CHHHHHHHHHHHHHhhCCcc-c-hHHH--------HHHHHh--cc--ch
Confidence 344455532258899999999999988 89999999999998765311 1 1111 111111 10 11
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHhhccccCCCCCHHHHhhhccCCC-CC--ChH-HHH-----------------
Q 008736 313 DAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCND-FD--PEL-ASK----------------- 371 (555)
Q Consensus 313 ~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~~~~~~-l~--~~~-~~~----------------- 371 (555)
.+.+++.+++..+ + .++.+.=.|-.|+.+.|.+++.++. +. .+. ..+
T Consensus 142 -~L~~~a~~~i~~~----------f-~~v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~~~~ 209 (557)
T PHA02713 142 -PIVKYIKRMLMSN----------I-PTLITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITEEQLL 209 (557)
T ss_pred -HHHHHHHHHHHHH----------H-HHHhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHHHHHh
Confidence 2456666666554 2 3455555566677777777666543 21 110 000
Q ss_pred HHHHHHhhhccCccc-c-----h----------hh-hhhc-ccccCcccccceeeecccceeeecccccceeEecccccc
Q 008736 372 VVLESLFFKAETPYR-Q-----R----------AL-AAEE-ANSTYRRFVERAYKYRPVKVVEFELPRQQCVVYLDLKRE 433 (555)
Q Consensus 372 ~l~eAl~~~~~~p~~-q-----~----------~~-~~~~-t~~~pR~~~~~~~~~~~~~~ve~ydp~~~~w~~~d~~~~ 433 (555)
.|++..++....+.. . + .+ +... .+.+||. ..+++.++- +........+||+.++
T Consensus 210 ~ll~~VR~~~l~~~~~~~~~~~~~i~~~~~c~~~l~~a~~~~~~~~r~--~~l~~~~g~-----~~~~~~~v~~yd~~~~ 282 (557)
T PHA02713 210 CILSCIDIQNLDKKSRLLLYSNKTINMYPSCIQFLLDNKQNRNIIPRQ--LCLVCHDTK-----YNVCNPCILVYNINTM 282 (557)
T ss_pred hhHhhhhHhhcchhhhhhhcchHHHHhhHHHHHHHhhhhhhcccCCcc--eEEEEecCc-----cccCCCCEEEEeCCCC
Confidence 011111111100000 0 0 00 0000 0112333 223333221 0111224456788888
Q ss_pred ceeeccC--CCceeEEEEEECCcEEEEcccC-CccccccEEEEE-----------------------------eeecccC
Q 008736 434 ECAHLFP--AGRIYSQAFHLGGQGFFLSAHC-NMDQQSSFHCFG-----------------------------LFLGMQE 481 (555)
Q Consensus 434 ~W~~l~p--~~R~~~~~~vl~g~lYviGG~~-~~~~~rs~~~y~-----------------------------~~gG~~~ 481 (555)
.|..+++ .+|.++++++++|+||++||.+ +....+++++|| ++||.++
T Consensus 283 ~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~ 362 (557)
T PHA02713 283 EYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNG 362 (557)
T ss_pred eEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCC
Confidence 8888776 6788899999999999999985 333467788888 4688776
Q ss_pred CCCcceeeccccceEecC---CCceecCCCCceeeccceeeccc
Q 008736 482 KGSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYR 522 (555)
Q Consensus 482 ~~~l~s~V~~~~~ErYdp---~W~~va~m~~~~~~~g~~~~g~~ 522 (555)
...++++ |+||| +|+.++||+.+|..+++++++++
T Consensus 363 ~~~~~sv------e~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~ 400 (557)
T PHA02713 363 TNVERTI------ECYTMGDDKWKMLPDMPIALSSYGMCVLDQY 400 (557)
T ss_pred CCCCceE------EEEECCCCeEEECCCCCcccccccEEEECCE
Confidence 6666774 99999 89999999999999987765543
No 16
>PHA02790 Kelch-like protein; Provisional
Probab=99.14 E-value=6.7e-10 Score=121.38 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=72.0
Q ss_pred ceeEeccccccceeeccC--CCceeEEEEEECCcEEEEcccCCccccccEEEEE--------------------------
Q 008736 423 QCVVYLDLKREECAHLFP--AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG-------------------------- 474 (555)
Q Consensus 423 ~~w~~~d~~~~~W~~l~p--~~R~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~-------------------------- 474 (555)
+...+|||.++.|..+++ .+|.+++++++||+||++||.++ ..++++|+
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g 363 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINN 363 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCcccEEEEECC
Confidence 456679999999999987 78999999999999999999753 24567776
Q ss_pred ---eeecccCCCCcceeeccccceEecC---CCceecCCCCceeeccceeeccc
Q 008736 475 ---LFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYR 522 (555)
Q Consensus 475 ---~~gG~~~~~~l~s~V~~~~~ErYdp---~W~~va~m~~~~~~~g~~~~g~~ 522 (555)
++||.++. .++ | |+||| +|+.++||+.+|..++++++|++
T Consensus 364 ~IYviGG~~~~--~~~-v-----e~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 364 VIYVIGGHSET--DTT-T-----EYLLPNHDQWQFGPSTYYPHYKSCALVFGRR 409 (480)
T ss_pred EEEEecCcCCC--Ccc-E-----EEEeCCCCEEEeCCCCCCccccceEEEECCE
Confidence 45665432 245 4 99999 99999999999999888877754
No 17
>PHA03098 kelch-like protein; Provisional
Probab=98.88 E-value=2.3e-08 Score=110.84 Aligned_cols=236 Identities=11% Similarity=0.071 Sum_probs=135.3
Q ss_pred CCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHHHhhccchhhhCCChhhhccccccccccCCCHHHHHHHHHHH
Q 008736 243 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKW 322 (555)
Q Consensus 243 ~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~efl~L~~~~L~~LL~sd~L~V~sE~~V~~av~~W 322 (555)
.++.+|+..++..|..+ ..+.|++.|.+|+.+++.. -+ .-+++.+ ... .+-..+.+++..+
T Consensus 72 ~i~~~~~~~ll~~A~~l----~~~~l~~~C~~~l~~~l~~-~n-c~~~~~~-----------a~~--~~~~~L~~~~~~~ 132 (534)
T PHA03098 72 NITSNNVKDILSIANYL----IIDFLINLCINYIIKIIDD-NN-CIDIYRF-----------SFF--YGCKKLYSAAYNY 132 (534)
T ss_pred EEcHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHhCCH-hH-HHHHHHH-----------HHH--cCcHHHHHHHHHH
Confidence 57899999999999999 8999999999999876421 01 1111111 011 1223566677777
Q ss_pred HhhcCCChHHHHHHHHHHhhccccCCCCCHHHHhhhccCCCCC--ChH-HHH------------------HHHHHHhhhc
Q 008736 323 ARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFD--PEL-ASK------------------VVLESLFFKA 381 (555)
Q Consensus 323 i~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~~~~~~l~--~~~-~~~------------------~l~eAl~~~~ 381 (555)
+..+ + ..+.+.=.|..|+.+.|..+++++.+. ++. ..+ .+++..++..
T Consensus 133 i~~n----------f-~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~ 201 (534)
T PHA03098 133 IRNN----------I-ELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITF 201 (534)
T ss_pred HHHH----------H-HHHhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccc
Confidence 7655 2 456666677788888888877776663 111 001 1111111111
Q ss_pred cCccc-------------chhhhhhcc------------cccCccc--ccceeeecccceeeecccccceeEeccccccc
Q 008736 382 ETPYR-------------QRALAAEEA------------NSTYRRF--VERAYKYRPVKVVEFELPRQQCVVYLDLKREE 434 (555)
Q Consensus 382 ~~p~~-------------q~~~~~~~t------------~~~pR~~--~~~~~~~~~~~~ve~ydp~~~~w~~~d~~~~~ 434 (555)
..+.. .+...++.. ...||.. ...+++.++.. + .......|++..++
T Consensus 202 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~-~~~~~~~~~~~~~~ 275 (534)
T PHA03098 202 LSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHITMS-----I-FTYNYITNYSPLSE 275 (534)
T ss_pred cCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCCCcCccCCCcceEeecccc-----h-hhceeeecchhhhh
Confidence 00000 000000000 0001111 01111111110 0 11223456666777
Q ss_pred eeeccCCC-ceeEEEEEECCcEEEEcccCCcc-ccccEEEEE-----------------------------eeecccCCC
Q 008736 435 CAHLFPAG-RIYSQAFHLGGQGFFLSAHCNMD-QQSSFHCFG-----------------------------LFLGMQEKG 483 (555)
Q Consensus 435 W~~l~p~~-R~~~~~~vl~g~lYviGG~~~~~-~~rs~~~y~-----------------------------~~gG~~~~~ 483 (555)
|..+.+.+ +..++++++++.+|++||..+.. ..+.+++|| ++||.++.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~ 355 (534)
T PHA03098 276 INTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSI 355 (534)
T ss_pred cccccCccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCE
Confidence 88776644 44568999999999999986532 345677776 467776555
Q ss_pred CcceeeccccceEecC---CCceecCCCCceeeccceeec
Q 008736 484 SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVG 520 (555)
Q Consensus 484 ~l~s~V~~~~~ErYdp---~W~~va~m~~~~~~~g~~~~g 520 (555)
.++++ |+||| +|+.+++|+.+|..+++++++
T Consensus 356 ~~~~v------~~yd~~~~~W~~~~~lp~~r~~~~~~~~~ 389 (534)
T PHA03098 356 SLNTV------ESWKPGESKWREEPPLIFPRYNPCVVNVN 389 (534)
T ss_pred ecceE------EEEcCCCCceeeCCCcCcCCccceEEEEC
Confidence 66674 99999 999999999999888766443
No 18
>PLN02153 epithiospecifier protein
Probab=98.53 E-value=4.4e-07 Score=94.92 Aligned_cols=91 Identities=12% Similarity=0.148 Sum_probs=61.5
Q ss_pred eEeccccccceeecc-------CCCceeEEEEEECCcEEEEcccCCc------cccccEEEEE-----------------
Q 008736 425 VVYLDLKREECAHLF-------PAGRIYSQAFHLGGQGFFLSAHCNM------DQQSSFHCFG----------------- 474 (555)
Q Consensus 425 w~~~d~~~~~W~~l~-------p~~R~~~~~~vl~g~lYviGG~~~~------~~~rs~~~y~----------------- 474 (555)
..+||+.+++|..+. |.+|..|+++++++++|++||++.. ..++++++||
T Consensus 103 v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~ 182 (341)
T PLN02153 103 FYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFE 182 (341)
T ss_pred EEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCC
Confidence 444666666666553 5689999999999999999998531 1245677777
Q ss_pred ---------------eeecccCC--------CCcceeeccccceEecC---CCceecC---CCCceeeccceeecc
Q 008736 475 ---------------LFLGMQEK--------GSVSFAVDYEFAARIKP---TEEYVSK---YKGNYTFTGGKAVGY 521 (555)
Q Consensus 475 ---------------~~gG~~~~--------~~l~s~V~~~~~ErYdp---~W~~va~---m~~~~~~~g~~~~g~ 521 (555)
++||.+.. ..++. | ++||| +|+.+++ +|.+|..++++++|+
T Consensus 183 ~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~-v-----~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~ 252 (341)
T PLN02153 183 KRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNA-V-----QFFDPASGKWTEVETTGAKPSARSVFAHAVVGK 252 (341)
T ss_pred CCCcceEEEECCeEEEEeccccccccCCccceecCc-e-----EEEEcCCCcEEeccccCCCCCCcceeeeEEECC
Confidence 23443210 01233 4 99999 9999975 678888877666553
No 19
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.49 E-value=3.4e-07 Score=95.85 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=39.9
Q ss_pred ceeEeccc--cccceeeccC---CCceeEEEEEECCcEEEEcccCCc------cccccEEEEE
Q 008736 423 QCVVYLDL--KREECAHLFP---AGRIYSQAFHLGGQGFFLSAHCNM------DQQSSFHCFG 474 (555)
Q Consensus 423 ~~w~~~d~--~~~~W~~l~p---~~R~~~~~~vl~g~lYviGG~~~~------~~~rs~~~y~ 474 (555)
+.|..||+ ..++|..+++ .+|.++++++++|+||++||+... ..++++++||
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd 91 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYD 91 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEE
Confidence 45666774 6778999886 368999999999999999998532 1356788887
No 20
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.46 E-value=3.9e-07 Score=95.36 Aligned_cols=94 Identities=13% Similarity=0.045 Sum_probs=64.9
Q ss_pred ceeEeccccccceeeccC---CCceeEEEEEECCcEEEEcccCC-------------------------ccccc------
Q 008736 423 QCVVYLDLKREECAHLFP---AGRIYSQAFHLGGQGFFLSAHCN-------------------------MDQQS------ 468 (555)
Q Consensus 423 ~~w~~~d~~~~~W~~l~p---~~R~~~~~~vl~g~lYviGG~~~-------------------------~~~~r------ 468 (555)
+..+.|||.+++|..+.+ .+|..+++++++|+||++||... |...|
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~ 247 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG 247 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence 677889999999999876 35788999999999999999632 11111
Q ss_pred -cEEEEE-------eeecccCCC-----------------CcceeeccccceEecC---CCceecCCCCceeeccceeec
Q 008736 469 -SFHCFG-------LFLGMQEKG-----------------SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVG 520 (555)
Q Consensus 469 -s~~~y~-------~~gG~~~~~-----------------~l~s~V~~~~~ErYdp---~W~~va~m~~~~~~~g~~~~g 520 (555)
..++.. ++||.+..+ .+.+ | |+||| +|+.+++|+.+|..++++++|
T Consensus 248 ~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----e~yd~~~~~W~~~~~lp~~~~~~~~~~~~ 321 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWS-S-----EVYALDNGKWSKVGKLPQGLAYGVSVSWN 321 (346)
T ss_pred ccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeE-e-----eEEEecCCcccccCCCCCCceeeEEEEcC
Confidence 011011 456654211 1234 3 99999 999999999999887766556
Q ss_pred cc
Q 008736 521 YR 522 (555)
Q Consensus 521 ~~ 522 (555)
++
T Consensus 322 ~~ 323 (346)
T TIGR03547 322 NG 323 (346)
T ss_pred CE
Confidence 54
No 21
>PF13964 Kelch_6: Kelch motif
Probab=98.45 E-value=2.5e-07 Score=68.33 Aligned_cols=47 Identities=21% Similarity=0.143 Sum_probs=38.8
Q ss_pred CceeEEEEEECCcEEEEcccCCccccccEEEEEeeecccCCCCcceeeccccceEecC---CCceecCCCCce
Q 008736 442 GRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKYKGNY 511 (555)
Q Consensus 442 ~R~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~~~gG~~~~~~l~s~V~~~~~ErYdp---~W~~va~m~~~~ 511 (555)
+|.+|++++++|+||++||.++. ...++. | |+||| +|+.+++|+.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-----------------~~~~~~-v-----~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-----------------GKYSND-V-----ERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-----------------CCcccc-E-----EEEcCCCCcEEECCCCCCCC
Confidence 57889999999999999998652 122345 4 99999 999999999987
No 22
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.40 E-value=7.4e-07 Score=92.43 Aligned_cols=95 Identities=8% Similarity=-0.009 Sum_probs=66.5
Q ss_pred cceeEeccccccceeeccC---CCceeEEEEEECCcEEEEcccCCccccccEEEEE------------------------
Q 008736 422 QQCVVYLDLKREECAHLFP---AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG------------------------ 474 (555)
Q Consensus 422 ~~~w~~~d~~~~~W~~l~p---~~R~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~------------------------ 474 (555)
.+....||+.+++|..+.+ .+|..+++++++|+||++||.++.. ...+++||
T Consensus 138 ~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~ 216 (323)
T TIGR03548 138 SNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGA 216 (323)
T ss_pred CceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccce
Confidence 4566678888888888864 4688898999999999999975421 12344454
Q ss_pred -----------eeecccCCCC-------------------------------cceeeccccceEecC---CCceecCCC-
Q 008736 475 -----------LFLGMQEKGS-------------------------------VSFAVDYEFAARIKP---TEEYVSKYK- 508 (555)
Q Consensus 475 -----------~~gG~~~~~~-------------------------------l~s~V~~~~~ErYdp---~W~~va~m~- 508 (555)
++||.++... .+..| |+||| +|+.+++|+
T Consensus 217 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~yd~~~~~W~~~~~~p~ 291 (323)
T TIGR03548 217 ASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKI-----LIYNVRTGKWKSIGNSPF 291 (323)
T ss_pred eEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceE-----EEEECCCCeeeEcccccc
Confidence 4555543210 11224 99999 999999997
Q ss_pred Cceeeccceeeccc
Q 008736 509 GNYTFTGGKAVGYR 522 (555)
Q Consensus 509 ~~~~~~g~~~~g~~ 522 (555)
.+|..+++++++++
T Consensus 292 ~~r~~~~~~~~~~~ 305 (323)
T TIGR03548 292 FARCGAALLLTGNN 305 (323)
T ss_pred cccCchheEEECCE
Confidence 57888888877763
No 23
>PLN02193 nitrile-specifier protein
Probab=98.38 E-value=1.4e-06 Score=95.07 Aligned_cols=105 Identities=13% Similarity=0.170 Sum_probs=71.0
Q ss_pred ceeeecccceeeecccccceeEeccccccceeecc-----CCCceeEEEEEECCcEEEEcccCCccccccEEEEE-----
Q 008736 405 RAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLF-----PAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG----- 474 (555)
Q Consensus 405 ~~~~~~~~~~ve~ydp~~~~w~~~d~~~~~W~~l~-----p~~R~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~----- 474 (555)
.+|+.++... ....+...+||+.+++|..+. |.+|.+|++++.+++||++||+++....+.+++||
T Consensus 230 ~lYvfGG~~~----~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 230 TLYVFGGRDA----SRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred EEEEECCCCC----CCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 4677655321 112334455666666666654 46799999999999999999987654556677776
Q ss_pred ---------------------------eeecccCCCCcceeeccccceEecC---CCceecCC---CCceeeccceeec
Q 008736 475 ---------------------------LFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKY---KGNYTFTGGKAVG 520 (555)
Q Consensus 475 ---------------------------~~gG~~~~~~l~s~V~~~~~ErYdp---~W~~va~m---~~~~~~~g~~~~g 520 (555)
++||.++. .++. | ++||| +|+.++++ |.+|..+++++++
T Consensus 306 W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~d-v-----~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~ 377 (470)
T PLN02193 306 WFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDD-V-----HYYDPVQDKWTQVETFGVRPSERSVFASAAVG 377 (470)
T ss_pred EEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCc-e-----EEEECCCCEEEEeccCCCCCCCcceeEEEEEC
Confidence 23444332 2345 4 99999 89999876 7888888777555
No 24
>PLN02153 epithiospecifier protein
Probab=98.30 E-value=2e-06 Score=89.87 Aligned_cols=93 Identities=11% Similarity=0.086 Sum_probs=64.6
Q ss_pred ceeEeccccccceeeccC---CCc---eeEEEEEECCcEEEEcccCCccccccEEEEE----------------------
Q 008736 423 QCVVYLDLKREECAHLFP---AGR---IYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG---------------------- 474 (555)
Q Consensus 423 ~~w~~~d~~~~~W~~l~p---~~R---~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~---------------------- 474 (555)
+....||+.+++|..+.+ .+| ..+++++++++||++||.++....+.+++||
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~ 129 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART 129 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce
Confidence 456668888888887765 233 3688899999999999986544455666666
Q ss_pred ------------eeecccCCC------CcceeeccccceEecC---CCceecCCC---Cceeeccceeecc
Q 008736 475 ------------LFLGMQEKG------SVSFAVDYEFAARIKP---TEEYVSKYK---GNYTFTGGKAVGY 521 (555)
Q Consensus 475 ------------~~gG~~~~~------~l~s~V~~~~~ErYdp---~W~~va~m~---~~~~~~g~~~~g~ 521 (555)
++||.+..+ .+.. | ++||| +|+.+++|. .+|..++.+++++
T Consensus 130 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~-v-----~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~ 194 (341)
T PLN02153 130 FHSMASDENHVYVFGGVSKGGLMKTPERFRT-I-----EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQG 194 (341)
T ss_pred eeEEEEECCEEEEECCccCCCccCCCcccce-E-----EEEECCCCeEeeCCCCCCCCCCCCcceEEEECC
Confidence 456664332 2334 3 99999 899999886 6677776665544
No 25
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.28 E-value=6.2e-07 Score=65.14 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=35.9
Q ss_pred CceeEEEEEECCcEEEEcccCCccccccEEEEEeeecccCCCCcceeeccccceEecC---CCceecCCC
Q 008736 442 GRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKYK 508 (555)
Q Consensus 442 ~R~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~~~gG~~~~~~l~s~V~~~~~ErYdp---~W~~va~m~ 508 (555)
+|.++++++++++||++||.++ ....++++ |+||| +|+.+++|+
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~-----------------~~~~~~~v------~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG-----------------NNQPTNSV------EVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES-----------------TSSBEEEE------EEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc-----------------cCceeeeE------EEEeCCCCEEEEcCCCC
Confidence 5889999999999999999854 12335564 99999 999999996
No 26
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.23 E-value=3.9e-06 Score=87.04 Aligned_cols=81 Identities=6% Similarity=-0.063 Sum_probs=59.9
Q ss_pred ceeeccC--CCceeEEEEEECCcEEEEcccCCccccccEEEEE---------------------------------eeec
Q 008736 434 ECAHLFP--AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG---------------------------------LFLG 478 (555)
Q Consensus 434 ~W~~l~p--~~R~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~---------------------------------~~gG 478 (555)
+|..+.+ .+|.++++++++++||++||.++....+++++|+ ++||
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG 131 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGG 131 (323)
T ss_pred eEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeC
Confidence 6888875 7788889999999999999987655556677765 3455
Q ss_pred ccCCCCcceeeccccceEecC---CCceecCCCC-ceeeccceeec
Q 008736 479 MQEKGSVSFAVDYEFAARIKP---TEEYVSKYKG-NYTFTGGKAVG 520 (555)
Q Consensus 479 ~~~~~~l~s~V~~~~~ErYdp---~W~~va~m~~-~~~~~g~~~~g 520 (555)
......++. | ++||| +|+.+++|+. +|..+.+++++
T Consensus 132 ~~~~~~~~~-v-----~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~ 171 (323)
T TIGR03548 132 NRNGKPSNK-S-----YLFNLETQEWFELPDFPGEPRVQPVCVKLQ 171 (323)
T ss_pred cCCCccCce-E-----EEEcCCCCCeeECCCCCCCCCCcceEEEEC
Confidence 543334555 4 99999 9999999985 67766554333
No 27
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.18 E-value=3.8e-06 Score=92.20 Aligned_cols=108 Identities=18% Similarity=0.184 Sum_probs=75.4
Q ss_pred chhhccCCCCCCCCCeeEEEEEe--EEEeehhhccccCHHHHHhhcCCCCCCCccEEEEe----------cCCCCHHHHH
Q 008736 130 GEEATGNIDPAWSMDLSTVLRVK--TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLR----------IHASEEAALM 197 (555)
Q Consensus 130 ~l~~~l~~~~~~~~~~DV~l~v~--~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~----------~~~v~~~~f~ 197 (555)
++..-+........+.||++.|+ .|+|||.||+++|++||++|....+.+..+.|.+. .+++.+..|+
T Consensus 544 sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe 623 (1267)
T KOG0783|consen 544 SFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFE 623 (1267)
T ss_pred hhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHH
Confidence 34444455556667889999995 49999999999999999999765443333333333 5699999999
Q ss_pred HHHHHHhcCccccC--cc-----------chHH-------HHHHHhcccchhhhHHHHHH
Q 008736 198 ELLNFMYSSTLSTT--TP-----------TALL-------DVLMAADKFEVASCMRYCSR 237 (555)
Q Consensus 198 ~lL~fiYtg~l~i~--~~-----------~~v~-------~lL~aAd~l~l~~L~~~C~~ 237 (555)
.+|+||||+.+--. ++ .|.. .++..+.+|++..|...-..
T Consensus 624 ~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s 683 (1267)
T KOG0783|consen 624 ILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVS 683 (1267)
T ss_pred HHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhh
Confidence 99999999854211 10 2332 36777788887777655443
No 28
>PLN02193 nitrile-specifier protein
Probab=98.16 E-value=5.8e-06 Score=90.28 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=66.5
Q ss_pred ceeEeccccccceeeccC------CCceeEEEEEECCcEEEEcccCCccccccEEEEE----------------------
Q 008736 423 QCVVYLDLKREECAHLFP------AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG---------------------- 474 (555)
Q Consensus 423 ~~w~~~d~~~~~W~~l~p------~~R~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~---------------------- 474 (555)
+.+.+||+.+++|..+.+ ..|..+++++++++||++||+++....+.+++||
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 272 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH 272 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccce
Confidence 345556766777776543 2356788999999999999987655566777776
Q ss_pred ----------eeecccCCCCcceeeccccceEecC---CCceecC---CCCceeeccceeecc
Q 008736 475 ----------LFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSK---YKGNYTFTGGKAVGY 521 (555)
Q Consensus 475 ----------~~gG~~~~~~l~s~V~~~~~ErYdp---~W~~va~---m~~~~~~~g~~~~g~ 521 (555)
++||.++...+..+ ++||| +|+.+++ ++.+|..++.+++++
T Consensus 273 ~~~~~~~~iYv~GG~~~~~~~~~~------~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~g 329 (470)
T PLN02193 273 SMAADEENVYVFGGVSATARLKTL------DSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQG 329 (470)
T ss_pred EEEEECCEEEEECCCCCCCCcceE------EEEECCCCEEEeCCCCCCCCCCCCCcEEEEECC
Confidence 45676665566664 99999 9999876 667777776665543
No 29
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.14 E-value=2.5e-06 Score=86.32 Aligned_cols=149 Identities=15% Similarity=0.081 Sum_probs=106.1
Q ss_pred EEEEE-eEEEeehhhccccCHHHHHhhcCCCCCCCc--cEEEEecCCCCHHHHHHHHHHHhcCccccCccchHHHHHHHh
Q 008736 147 TVLRV-KTVHISSPILAAKSPFFYKLFSNGMRESEQ--RYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAA 223 (555)
Q Consensus 147 V~l~v-~~f~aHr~ILaa~S~yF~amf~~~~~Es~~--~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aA 223 (555)
|.+-+ ..+|||++++. +.+||+.||.|++.|+.. ....+..+.....+.+.+++|+|+.+..+.. +-+.+++-.|
T Consensus 295 iql~~~~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~-~~A~dvll~a 372 (516)
T KOG0511|consen 295 IQLPEEDRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIF-DVASDVLLFA 372 (516)
T ss_pred ccccccccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchH-HHHhhHHHHh
Confidence 44444 46999999996 668999999999999652 2222333477889999999999999999988 8899999999
Q ss_pred cccchhh---hHHHHHHHHhcC--CCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHHHhhccchhhhCCChhhh
Q 008736 224 DKFEVAS---CMRYCSRLLRNL--PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGI 298 (555)
Q Consensus 224 d~l~l~~---L~~~C~~~L~~l--~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~efl~L~~~~L 298 (555)
+++.+.. |+.+...-|++- -++.-|++.++..+-.. ....|.+.+..|++.|...+.. .+++..+-....
T Consensus 373 d~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~----~~~rlEqfa~~~~a~hl~~l~~-dPe~~~~~~~s~ 447 (516)
T KOG0511|consen 373 DKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDL----VACRLEQFAETHEARHLLLLLP-DPEGDSSLRTSV 447 (516)
T ss_pred hHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHhcC-CchhhHHHHhcc
Confidence 9997762 444444444430 13334566666654333 6788899999999999998888 787766443333
Q ss_pred cccc
Q 008736 299 EAVL 302 (555)
Q Consensus 299 ~~LL 302 (555)
..+.
T Consensus 448 ~ri~ 451 (516)
T KOG0511|consen 448 PRIP 451 (516)
T ss_pred chhh
Confidence 3333
No 30
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.08 E-value=5.4e-06 Score=87.93 Aligned_cols=94 Identities=9% Similarity=-0.013 Sum_probs=63.3
Q ss_pred ceeEeccccccceeeccC---CCceeEEEEEECCcEEEEcccCC-------------------------cccccc-----
Q 008736 423 QCVVYLDLKREECAHLFP---AGRIYSQAFHLGGQGFFLSAHCN-------------------------MDQQSS----- 469 (555)
Q Consensus 423 ~~w~~~d~~~~~W~~l~p---~~R~~~~~~vl~g~lYviGG~~~-------------------------~~~~rs----- 469 (555)
+...+||+.++.|..+.+ .+|..+++++++++||++||... |...|.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 268 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE 268 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence 556778888888887765 36778899999999999999521 111110
Q ss_pred -E-E--------EEEeeecccCCCC-----------------cceeeccccceEecC---CCceecCCCCceeeccceee
Q 008736 470 -F-H--------CFGLFLGMQEKGS-----------------VSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAV 519 (555)
Q Consensus 470 -~-~--------~y~~~gG~~~~~~-----------------l~s~V~~~~~ErYdp---~W~~va~m~~~~~~~g~~~~ 519 (555)
. . +.-++||.+..+. +.+ | |+||| +|+.+++|+.+|..++++++
T Consensus 269 ~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----e~yd~~~~~W~~~~~lp~~r~~~~av~~ 342 (376)
T PRK14131 269 GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWS-D-----EIYALVNGKWQKVGELPQGLAYGVSVSW 342 (376)
T ss_pred ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceee-h-----heEEecCCcccccCcCCCCccceEEEEe
Confidence 0 0 0114566542111 123 3 99999 99999999999998877766
Q ss_pred ccc
Q 008736 520 GYR 522 (555)
Q Consensus 520 g~~ 522 (555)
+++
T Consensus 343 ~~~ 345 (376)
T PRK14131 343 NNG 345 (376)
T ss_pred CCE
Confidence 654
No 31
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.04 E-value=1.1e-05 Score=85.46 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=38.1
Q ss_pred eeEecccc--ccceeeccC---CCceeEEEEEECCcEEEEcccCC-c-----cccccEEEEE
Q 008736 424 CVVYLDLK--REECAHLFP---AGRIYSQAFHLGGQGFFLSAHCN-M-----DQQSSFHCFG 474 (555)
Q Consensus 424 ~w~~~d~~--~~~W~~l~p---~~R~~~~~~vl~g~lYviGG~~~-~-----~~~rs~~~y~ 474 (555)
.|..||+. .+.|..+++ .+|..+++++++|+||++||+.. . ...+.+++||
T Consensus 51 ~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD 112 (376)
T PRK14131 51 SWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYD 112 (376)
T ss_pred eEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEe
Confidence 35566654 478998875 47889999999999999999854 1 1246788887
No 32
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.54 E-value=5.2e-05 Score=77.68 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=103.4
Q ss_pred eEEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHhcCccccCccchHH---HHHHHhcccch
Q 008736 152 KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALL---DVLMAADKFEV 228 (555)
Q Consensus 152 ~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v~---~lL~aAd~l~l 228 (555)
+.+.+|+++++++|+.|++|+.....+..+..+++. +.++..++.+..|.|+..-.... .... .++.+|..++.
T Consensus 110 g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~--d~~~~~~~~~~~F~~~~s~~~~~-~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 110 GFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLL--EEKPEVLEALNGFQVLPSQVSSV-ERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred cEEEcCceEEEeeecceeeecccccchhcccccccc--ccchhhHhhhceEEEeccchHHH-HHhhcCChhhhhcccccc
Confidence 569999999999999999999987766666667766 88999999999999996544333 3343 88889999999
Q ss_pred hhhHHHHHHHHhcCCCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHH--hHHHhhc
Q 008736 229 ASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAA--RYKDISK 285 (555)
Q Consensus 229 ~~L~~~C~~~L~~l~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~--nf~~v~~ 285 (555)
+.|+..|...+.+ .+...+...+++.++.+ ....+..++..++.. ++..+..
T Consensus 187 ~~lk~~~~~~l~~-~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~ld~l~~ 240 (297)
T KOG1987|consen 187 RHLKLACMPVLLS-LIETLNVSQSLQEASNY----DLKEAKSALTYVIAAGFKLDWLEK 240 (297)
T ss_pred HHHHHHHHHHHHH-HHHhhhhcccHHHhchh----HHHHHHHHHHHHHhccchHhHHHH
Confidence 9999999999999 68888888888888777 677788888888876 6556654
No 33
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.48 E-value=0.00016 Score=52.97 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=34.0
Q ss_pred CceeEEEEEECCcEEEEccc-CCccccccEEEEEeeecccCCCCcceeeccccceEecC---CCceecCCC
Q 008736 442 GRIYSQAFHLGGQGFFLSAH-CNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKYK 508 (555)
Q Consensus 442 ~R~~~~~~vl~g~lYviGG~-~~~~~~rs~~~y~~~gG~~~~~~l~s~V~~~~~ErYdp---~W~~va~m~ 508 (555)
+|..|++++++++||++||+ .+ +.....+. | +.||+ +|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~----------------~~~~~~~~-v-----~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTD----------------NGGSSSND-V-----WVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccC----------------CCCcccce-e-----EEEECCCCEEeecCCCC
Confidence 57889999999999999998 11 11112344 4 89999 999999985
No 34
>smart00612 Kelch Kelch domain.
Probab=97.44 E-value=0.0001 Score=52.78 Aligned_cols=27 Identities=7% Similarity=-0.069 Sum_probs=25.0
Q ss_pred eEecC---CCceecCCCCceeeccceeecc
Q 008736 495 ARIKP---TEEYVSKYKGNYTFTGGKAVGY 521 (555)
Q Consensus 495 ErYdp---~W~~va~m~~~~~~~g~~~~g~ 521 (555)
|+||| +|+.+++|+.+|..++++++++
T Consensus 18 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 18 EVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred EEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 99999 9999999999999999888764
No 35
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.44 E-value=5.1e-05 Score=73.86 Aligned_cols=99 Identities=20% Similarity=0.314 Sum_probs=69.0
Q ss_pred EEEeehhhccccCHHHHHhhcCCCCCC---------CccEEEEecCCCCHHHHH-HHHHHHhcCccccCcc---------
Q 008736 153 TVHISSPILAAKSPFFYKLFSNGMRES---------EQRYVTLRIHASEEAALM-ELLNFMYSSTLSTTTP--------- 213 (555)
Q Consensus 153 ~f~aHr~ILaa~S~yF~amf~~~~~Es---------~~~~I~L~~~~v~~~~f~-~lL~fiYtg~l~i~~~--------- 213 (555)
+++||++|.|++|++||.++....+|. ..+.|.+. .-+=|.+|. .+|.+|||+.+.++-.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifd-E~I~PkafA~i~lhclYTD~lDlSl~hkce~SigS 340 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFD-ELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGS 340 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeech-hhhcchhhhhhhhhhheecccchhhcccCCccccc
Confidence 499999999999999999986543332 22456664 234445554 5789999998764311
Q ss_pred ------------------chHHHHHHHhcccchhhhHHHHHHHHhcCCCChhhHHHHH
Q 008736 214 ------------------TALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYL 253 (555)
Q Consensus 214 ------------------~~v~~lL~aAd~l~l~~L~~~C~~~L~~l~l~~~n~~~~l 253 (555)
..+++|+.+|-+|.+.-|.+.|+..+.. ....++...++
T Consensus 341 LSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~-acaadlsn~cL 397 (401)
T KOG2838|consen 341 LSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRK-ACAADLSNGCL 397 (401)
T ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhcccccc
Confidence 2356788888888888888888888887 56665554443
No 36
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.0014 Score=63.74 Aligned_cols=92 Identities=16% Similarity=0.298 Sum_probs=76.7
Q ss_pred EEEEE--eEEEeehhhccccCHHHHHhhcCCCC--CCCccEEEEecCCCCHHHHHHHHHHHhcCccccCcc-chHHHHHH
Q 008736 147 TVLRV--KTVHISSPILAAKSPFFYKLFSNGMR--ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTP-TALLDVLM 221 (555)
Q Consensus 147 V~l~v--~~f~aHr~ILaa~S~yF~amf~~~~~--Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~-~~v~~lL~ 221 (555)
|.|.| ..|..++.=|.....+|++||.+++. -...+.|-| +=+|.-|..+|+||-.|.+.+... ..+.+|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 34555 35999999999999999999999763 233466887 689999999999999888775441 57889999
Q ss_pred HhcccchhhhHHHHHHHHhc
Q 008736 222 AADKFEVASCMRYCSRLLRN 241 (555)
Q Consensus 222 aAd~l~l~~L~~~C~~~L~~ 241 (555)
=|.+|.++.|++.|...+..
T Consensus 84 EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 84 EAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred HHHHhhHHHHHHHHHHHhhh
Confidence 99999999999999998876
No 37
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.24 E-value=0.00022 Score=69.58 Aligned_cols=89 Identities=13% Similarity=0.181 Sum_probs=59.8
Q ss_pred CCCCCCeeEEEEEeEEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHhcCccccCcc--chH
Q 008736 139 PAWSMDLSTVLRVKTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTP--TAL 216 (555)
Q Consensus 139 ~~~~~~~DV~l~v~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~--~~v 216 (555)
++--.+.|+++.-..|+|||++||+++|+|+.+.++.-.........+...+++.++|+.+|.|+|||+.-.... .|+
T Consensus 127 ~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~ 206 (401)
T KOG2838|consen 127 RKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNS 206 (401)
T ss_pred eeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCchH
Confidence 334445677777677999999999999999998776432222222222234789999999999999998765431 344
Q ss_pred HHHHHHhcccc
Q 008736 217 LDVLMAADKFE 227 (555)
Q Consensus 217 ~~lL~aAd~l~ 227 (555)
.-|-++..-|+
T Consensus 207 diL~QL~edFG 217 (401)
T KOG2838|consen 207 DILEQLCEDFG 217 (401)
T ss_pred HHHHHHHHhhC
Confidence 44444444444
No 38
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.02 E-value=0.00085 Score=56.35 Aligned_cols=86 Identities=16% Similarity=0.273 Sum_probs=64.2
Q ss_pred EEEEE--eEEEeehhhcc-ccCHHHHHhhcCC---CCCCCccEEEEecCCCCHHHHHHHHHHHhc-CccccCccchHHHH
Q 008736 147 TVLRV--KTVHISSPILA-AKSPFFYKLFSNG---MRESEQRYVTLRIHASEEAALMELLNFMYS-STLSTTTPTALLDV 219 (555)
Q Consensus 147 V~l~v--~~f~aHr~ILa-a~S~yF~amf~~~---~~Es~~~~I~L~~~~v~~~~f~~lL~fiYt-g~l~i~~~~~v~~l 219 (555)
|.|.| +.|.+-+..|. ....+|.+|+.+. .....+..+-| +-++..|+.||+|+.+ +.+.......+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 56677 35999998887 5567999999864 34455677877 6899999999999999 77776533678999
Q ss_pred HHHhcccchhhh-HHHH
Q 008736 220 LMAADKFEVASC-MRYC 235 (555)
Q Consensus 220 L~aAd~l~l~~L-~~~C 235 (555)
++-|.+|+++.+ ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999998 6766
No 39
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.99 E-value=0.0013 Score=66.75 Aligned_cols=90 Identities=12% Similarity=0.284 Sum_probs=73.7
Q ss_pred eEEEeehhhccccCHHHHHhhcCCCCCC-CccEEEEecCCCCHHHHHHHHHHHhcCccccCccchHHHHHHHhcccchhh
Q 008736 152 KTVHISSPILAAKSPFFYKLFSNGMRES-EQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVAS 230 (555)
Q Consensus 152 ~~f~aHr~ILaa~S~yF~amf~~~~~Es-~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~l~l~~ 230 (555)
+.|.|.+-.|-..=.||+..+.....++ ...+|.|.+ .-+-.+|+-+++|+....-.++. .||..||.-|++|+|++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~l~~-~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPSLTP-SNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCcCCc-CcEEEeEehhhhhccHH
Confidence 4699999999999999999996522221 223455542 46789999999999998888888 89999999999999999
Q ss_pred hHHHHHHHHhcCCC
Q 008736 231 CMRYCSRLLRNLPM 244 (555)
Q Consensus 231 L~~~C~~~L~~l~l 244 (555)
|++.|-.|+.+ ++
T Consensus 92 Lve~cl~y~~~-~~ 104 (317)
T PF11822_consen 92 LVEECLQYCHD-HM 104 (317)
T ss_pred HHHHHHHHHHH-hH
Confidence 99999999977 44
No 40
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.81 E-value=0.0041 Score=68.17 Aligned_cols=93 Identities=9% Similarity=-0.022 Sum_probs=61.4
Q ss_pred eeeecccccceeEeccccccceeeccCCCceeEEEEEECCcEEEEcccCCcc-ccccEEEEE------------------
Q 008736 414 VVEFELPRQQCVVYLDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMD-QQSSFHCFG------------------ 474 (555)
Q Consensus 414 ~ve~ydp~~~~w~~~d~~~~~W~~l~p~~R~~~~~~vl~g~lYviGG~~~~~-~~rs~~~y~------------------ 474 (555)
.+..||+.+++|....+..+ .|.+|.+|.+++.|.++|++||.+... ..+.++.||
T Consensus 140 ~l~~~d~~t~~W~~l~~~~~-----~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 140 ELHSLDLSTRTWSLLSPTGD-----PPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred heEeccCCCCcEEEecCcCC-----CCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 44555555555555443322 458899999999999999999987644 577788887
Q ss_pred --------------eeeccc-CCCCcceeeccccceEecC---CCcee---cCCCCceeeccce
Q 008736 475 --------------LFLGMQ-EKGSVSFAVDYEFAARIKP---TEEYV---SKYKGNYTFTGGK 517 (555)
Q Consensus 475 --------------~~gG~~-~~~~l~s~V~~~~~ErYdp---~W~~v---a~m~~~~~~~g~~ 517 (555)
++||.+ +.-.++.+ =.+|- +|... ..++.+|..+-.+
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~------~~ldl~~~~W~~~~~~g~~p~~R~~h~~~ 272 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDV------HILDLSTWEWKLLPTGGDLPSPRSGHSLT 272 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecce------EeeecccceeeeccccCCCCCCcceeeeE
Confidence 456655 33344553 56666 66643 4566777777655
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=96.65 E-value=0.0013 Score=47.98 Aligned_cols=45 Identities=9% Similarity=0.004 Sum_probs=24.9
Q ss_pred CceeEEEEEEC-CcEEEEcccCCccccccEEEEEeeecccCCCCcceeeccccceEecC---CCceecCCCC
Q 008736 442 GRIYSQAFHLG-GQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKYKG 509 (555)
Q Consensus 442 ~R~~~~~~vl~-g~lYviGG~~~~~~~rs~~~y~~~gG~~~~~~l~s~V~~~~~ErYdp---~W~~va~m~~ 509 (555)
+|.+|+++.++ +.+|++||.+... ..++.+ +.||+ +|+.+++||.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~-----------------~~~~d~------~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG-----------------SPLNDL------WIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T-----------------EE---E------EEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC-----------------cccCCE------EEEECCCCEEEECCCCCC
Confidence 58899999984 8999999975321 123454 88998 9999999873
No 42
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.51 E-value=0.005 Score=50.87 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=56.4
Q ss_pred EEEeehhhccccCHHHHHhhcCCC--CCCCccEEEEecCCCCHHHHHHHHHHH-----hcCc-c-----ccCccchHHHH
Q 008736 153 TVHISSPILAAKSPFFYKLFSNGM--RESEQRYVTLRIHASEEAALMELLNFM-----YSST-L-----STTTPTALLDV 219 (555)
Q Consensus 153 ~f~aHr~ILaa~S~yF~amf~~~~--~Es~~~~I~L~~~~v~~~~f~~lL~fi-----Ytg~-l-----~i~~~~~v~~l 219 (555)
+|-.-|-+ |.-|+-.|+||++.. .|...++|.++ ++....++.+.+|+ |++. . +|.+ +.+++|
T Consensus 28 efiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~--di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp-emaleL 103 (112)
T KOG3473|consen 28 EFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFR--DIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP-EMALEL 103 (112)
T ss_pred EEEEeehh-hhhhhHHHHHHcCCccccccccceEEec--cchHHHHHHHHHHhhheeeeccccccCCCCCCCH-HHHHHH
Confidence 46555544 567999999999854 55667889998 99999999999998 6665 2 3455 889999
Q ss_pred HHHhcccc
Q 008736 220 LMAADKFE 227 (555)
Q Consensus 220 L~aAd~l~ 227 (555)
|.+|++|.
T Consensus 104 L~aAn~Le 111 (112)
T KOG3473|consen 104 LMAANYLE 111 (112)
T ss_pred HHHhhhhc
Confidence 99999985
No 43
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.33 E-value=0.0064 Score=59.67 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=51.5
Q ss_pred ccccccceeeccC-----CCceeEEEEEECCcEEEEcccCC-------------------------------------cc
Q 008736 428 LDLKREECAHLFP-----AGRIYSQAFHLGGQGFFLSAHCN-------------------------------------MD 465 (555)
Q Consensus 428 ~d~~~~~W~~l~p-----~~R~~~~~~vl~g~lYviGG~~~-------------------------------------~~ 465 (555)
+|..+-+|..+-- .=|-+|++.++++..|++||... ..
T Consensus 162 ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GR 241 (392)
T KOG4693|consen 162 LDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGR 241 (392)
T ss_pred EeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcc
Confidence 5555666665522 33556777777777777776421 01
Q ss_pred ccccEEEEE----eeecccCCCC--cceeeccccceEecC---CCceecC---CCCceeeccceeeccc
Q 008736 466 QQSSFHCFG----LFLGMQEKGS--VSFAVDYEFAARIKP---TEEYVSK---YKGNYTFTGGKAVGYR 522 (555)
Q Consensus 466 ~~rs~~~y~----~~gG~~~~~~--l~s~V~~~~~ErYdp---~W~~va~---m~~~~~~~g~~~~g~~ 522 (555)
...+.+.|+ ++||+++.-. .+-- -++|| .|+.+.+ .|.+|....++++|+|
T Consensus 242 RSHS~fvYng~~Y~FGGYng~ln~HfndL------y~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~k 304 (392)
T KOG4693|consen 242 RSHSTFVYNGKMYMFGGYNGTLNVHFNDL------YCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGK 304 (392)
T ss_pred cccceEEEcceEEEecccchhhhhhhcce------eecccccchheeeeccCCCCCcccceeEEEECCE
Confidence 123344444 5677765322 2232 78899 8998854 5556666666667766
No 44
>PF13854 Kelch_5: Kelch motif
Probab=95.97 E-value=0.014 Score=41.23 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=28.3
Q ss_pred CCCceeEEEEEECCcEEEEcccCC--ccccccEEEEEe
Q 008736 440 PAGRIYSQAFHLGGQGFFLSAHCN--MDQQSSFHCFGL 475 (555)
Q Consensus 440 p~~R~~~~~~vl~g~lYviGG~~~--~~~~rs~~~y~~ 475 (555)
|.+|..|+++++++++|++||..+ ....+.+..|++
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l 39 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDL 39 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEEC
Confidence 578999999999999999999974 444555666553
No 45
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=95.92 E-value=0.0093 Score=43.56 Aligned_cols=45 Identities=4% Similarity=-0.074 Sum_probs=33.1
Q ss_pred CCcEEEEcccCCccccccEEEEEeeecccCCCCcceeeccccceEecC---CCceecCCCCceeecccee
Q 008736 452 GGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKA 518 (555)
Q Consensus 452 ~g~lYviGG~~~~~~~rs~~~y~~~gG~~~~~~l~s~V~~~~~ErYdp---~W~~va~m~~~~~~~g~~~ 518 (555)
|+++|++||.+. .+...++.+ -+||| +|+.++++|.+|..+.+++
T Consensus 1 g~~~~vfGG~~~----------------~~~~~~nd~------~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDD----------------DGGTRLNDV------WVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCC----------------CCCCEecCE------EEEECCCCEEEECCCCCCCccceEEEE
Confidence 578899998752 011223443 77888 8999999999999998775
No 46
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.71 E-value=0.036 Score=60.81 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=71.3
Q ss_pred eeEeccccccceeeccC-----CCceeEEEEEECCcEEEEcccCC-ccccccEEEEE-----------------------
Q 008736 424 CVVYLDLKREECAHLFP-----AGRIYSQAFHLGGQGFFLSAHCN-MDQQSSFHCFG----------------------- 474 (555)
Q Consensus 424 ~w~~~d~~~~~W~~l~p-----~~R~~~~~~vl~g~lYviGG~~~-~~~~rs~~~y~----------------------- 474 (555)
....+|..+..|..... .+|..|.+++++.++|++||.+. ...+..+++||
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs 168 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS 168 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence 35567777777776643 78999999999999999999874 34456677776
Q ss_pred ---------eeecccCCC-CcceeeccccceEecC---CCcee---cCCCCceeeccceeecccc
Q 008736 475 ---------LFLGMQEKG-SVSFAVDYEFAARIKP---TEEYV---SKYKGNYTFTGGKAVGYRN 523 (555)
Q Consensus 475 ---------~~gG~~~~~-~l~s~V~~~~~ErYdp---~W~~v---a~m~~~~~~~g~~~~g~~~ 523 (555)
++||.+..+ .++.+ -.||+ +|..+ .+-|.+|.+++.++++.+-
T Consensus 169 ~~~~g~~l~vfGG~~~~~~~~ndl------~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~ 227 (482)
T KOG0379|consen 169 ATVVGTKLVVFGGIGGTGDSLNDL------HIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKL 227 (482)
T ss_pred EEEECCEEEEECCccCcccceeee------eeeccccccceecccCCCCCCCCCCceEEEECCeE
Confidence 467877666 55664 99999 89876 5667789999888777653
No 47
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=95.21 E-value=0.045 Score=46.90 Aligned_cols=78 Identities=9% Similarity=0.178 Sum_probs=55.4
Q ss_pred EEEEE---eEEEeehhhccccCHHHHHhhcCCCCCC-CccEEEEecCCCCHHHHHHHHHHHhcCccc-------------
Q 008736 147 TVLRV---KTVHISSPILAAKSPFFYKLFSNGMRES-EQRYVTLRIHASEEAALMELLNFMYSSTLS------------- 209 (555)
Q Consensus 147 V~l~v---~~f~aHr~ILaa~S~yF~amf~~~~~Es-~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~------------- 209 (555)
|+|.. .+|.+.+.+. ..|..++.|+.+.-.+. ....|.|+ +++..+++.+++|++.-.-.
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 44554 3699999977 57999999997633222 22456665 99999999999999743211
Q ss_pred ------cCccchHHHHHHHhcccch
Q 008736 210 ------TTTPTALLDVLMAADKFEV 228 (555)
Q Consensus 210 ------i~~~~~v~~lL~aAd~l~l 228 (555)
++. +.+.+|+.||++|+|
T Consensus 81 D~~F~~~d~-~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQ-ETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCH-HHHHHHHHHHHhhCC
Confidence 233 578899999988875
No 48
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=94.36 E-value=0.091 Score=50.35 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=55.8
Q ss_pred HHHHHhhcCC--C-CCCCccEEEEecCCCCHHHHHHHHHHHhcCccccCccchHHHHHHHhcccchhhhHHHHHH
Q 008736 166 PFFYKLFSNG--M-RESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSR 237 (555)
Q Consensus 166 ~yF~amf~~~--~-~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~l~l~~L~~~C~~ 237 (555)
.-..+||.+. | .|.++.-+-| +-++.-|+.+|+|+-.|++.....-++.++|+.|++|||-+|++..+.
T Consensus 34 SMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 34 SMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 3567888763 2 3444555666 689999999999999999987665789999999999999999988777
No 49
>smart00612 Kelch Kelch domain.
Probab=94.30 E-value=0.065 Score=37.86 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=23.8
Q ss_pred cceeEeccccccceeeccC--CCceeEEEEEECC
Q 008736 422 QQCVVYLDLKREECAHLFP--AGRIYSQAFHLGG 453 (555)
Q Consensus 422 ~~~w~~~d~~~~~W~~l~p--~~R~~~~~~vl~g 453 (555)
.+..+.||+.++.|..+++ .+|.++++++++|
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 3455667777777777766 7899999988875
No 50
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=94.20 E-value=0.12 Score=51.10 Aligned_cols=77 Identities=12% Similarity=0.163 Sum_probs=53.6
Q ss_pred CCceeEEEEEECCcEEEEcccCCc-----cccccEEEEE-----------------------------------------
Q 008736 441 AGRIYSQAFHLGGQGFFLSAHCNM-----DQQSSFHCFG----------------------------------------- 474 (555)
Q Consensus 441 ~~R~~~~~~vl~g~lYviGG~~~~-----~~~rs~~~y~----------------------------------------- 474 (555)
..|.+|+++.+|..||-+||+|.. ..+=.+|.++
T Consensus 12 PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~ 91 (392)
T KOG4693|consen 12 PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKA 91 (392)
T ss_pred cccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceE
Confidence 568999999999999999999751 1122234443
Q ss_pred -eeecccCCCCcceeeccccceEecC---CCcee---cCCCCceeeccceeeccc
Q 008736 475 -LFLGMQEKGSVSFAVDYEFAARIKP---TEEYV---SKYKGNYTFTGGKAVGYR 522 (555)
Q Consensus 475 -~~gG~~~~~~l~s~V~~~~~ErYdp---~W~~v---a~m~~~~~~~g~~~~g~~ 522 (555)
++||.+.....-++. -+||| +|... .-+|..|..+.+++.|+.
T Consensus 92 yvWGGRND~egaCN~L-----y~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~ 141 (392)
T KOG4693|consen 92 YVWGGRNDDEGACNLL-----YEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQ 141 (392)
T ss_pred EEEcCccCccccccee-----eeeccccccccccceeeecCCccCCceeeEECcE
Confidence 467877655555545 89999 89864 346777887777777754
No 51
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.14 Score=47.53 Aligned_cols=99 Identities=11% Similarity=0.170 Sum_probs=69.5
Q ss_pred EEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHhcCccc-----------------------
Q 008736 153 TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLS----------------------- 209 (555)
Q Consensus 153 ~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~----------------------- 209 (555)
.|.+-..+. ..|....+++...-.......|.|+ +|...+|..+|+|++.-+-.
T Consensus 16 ~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~F 92 (162)
T KOG1724|consen 16 IFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEF 92 (162)
T ss_pred eeehhHHHH-HHhHHHHHHHHHcCCCccCCccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHH
Confidence 477777665 4678888887652222222456665 89999999999999873311
Q ss_pred --cCccchHHHHHHHhcccchhhhHHHHHHHHhcC--CCChhhHHHHHhc
Q 008736 210 --TTTPTALLDVLMAADKFEVASCMRYCSRLLRNL--PMTCESALLYLDL 255 (555)
Q Consensus 210 --i~~~~~v~~lL~aAd~l~l~~L~~~C~~~L~~l--~l~~~n~~~~l~~ 255 (555)
+.. .++.+|..||++|+++.|.+.|++.+..+ .-+++..-..+.+
T Consensus 93 lk~d~-~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I 141 (162)
T KOG1724|consen 93 LKVDQ-GTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNI 141 (162)
T ss_pred HhcCH-HHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCC
Confidence 122 57899999999999999999999988763 2355555554443
No 52
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=92.70 E-value=0.29 Score=51.15 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=36.5
Q ss_pred eccccccceeecc----CCCceeEEEEEECCcEEEEcccCC----ccccccEEEEE
Q 008736 427 YLDLKREECAHLF----PAGRIYSQAFHLGGQGFFLSAHCN----MDQQSSFHCFG 474 (555)
Q Consensus 427 ~~d~~~~~W~~l~----p~~R~~~~~~vl~g~lYviGG~~~----~~~~rs~~~y~ 474 (555)
.+|..+.+|..+. |.+|+.|-+++...+++++||+.. ..+.+.++||+
T Consensus 158 ~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~Fd 213 (521)
T KOG1230|consen 158 LFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFD 213 (521)
T ss_pred eeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEe
Confidence 3788888999884 488999999999999999999732 12345555555
No 53
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=91.78 E-value=0.56 Score=49.37 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=65.0
Q ss_pred EEEEE--eEEEeehhhccccC--HHHHHhhcCCCCCCCccE--EEEecCCCCHHHHHHHHHHHhcCccccCccchHHHHH
Q 008736 147 TVLRV--KTVHISSPILAAKS--PFFYKLFSNGMRESEQRY--VTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVL 220 (555)
Q Consensus 147 V~l~v--~~f~aHr~ILaa~S--~yF~amf~~~~~Es~~~~--I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v~~lL 220 (555)
|.|.| +.|.-.+.=|+... .+|-+++++.|.-.+... |-| +=+|+.|..+|+|+-||++++........++
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 44666 34777777675443 699999998776444333 666 6899999999999999999997633334455
Q ss_pred HHhcccchhhhHH---HHHHHH
Q 008736 221 MAADKFEVASCMR---YCSRLL 239 (555)
Q Consensus 221 ~aAd~l~l~~L~~---~C~~~L 239 (555)
.=|.+|+|.+|.. +|+.-+
T Consensus 90 dEA~fYGl~~llrrl~~~~~~F 111 (465)
T KOG2714|consen 90 DEAMFYGLTPLLRRLTLCEELF 111 (465)
T ss_pred hhhhhcCcHHHHHHhhcCcccc
Confidence 5899999999876 555543
No 54
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.09 E-value=0.55 Score=50.32 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=37.9
Q ss_pred ceeeecccceeeecccccceeEeccccccceeeccC---------CCceeEEEEEECCcEEEEcccCC
Q 008736 405 RAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFP---------AGRIYSQAFHLGGQGFFLSAHCN 463 (555)
Q Consensus 405 ~~~~~~~~~~ve~ydp~~~~w~~~d~~~~~W~~l~p---------~~R~~~~~~vl~g~lYviGG~~~ 463 (555)
++++++++ || |.-.+|..+.+...+.+|..+-| -+|+.|.-.+.|++.|++||..|
T Consensus 93 rilvFGGM--vE-YGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaN 157 (830)
T KOG4152|consen 93 RILVFGGM--VE-YGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAN 157 (830)
T ss_pred eEEEEccE--ee-eccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccc
Confidence 46666663 34 33344444444455666776633 57999999999999999999754
No 55
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=90.81 E-value=1.3 Score=34.09 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=40.2
Q ss_pred EEEEE---eEEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHhc
Q 008736 147 TVLRV---KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYS 205 (555)
Q Consensus 147 V~l~v---~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYt 205 (555)
|+|.. ..|.+.+.++. .|..++.|+.+.-.+.. .|.|+ +++..+|+.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLP--NVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEET--TS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccC--ccCHHHHHHHHHHHHh
Confidence 44555 46999998875 79999999976332222 67776 9999999999999963
No 56
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=89.86 E-value=0.61 Score=48.85 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=31.0
Q ss_pred eeEeccccccceeecc----CCCceeEEEEEEC-CcEEEEccc
Q 008736 424 CVVYLDLKREECAHLF----PAGRIYSQAFHLG-GQGFFLSAH 461 (555)
Q Consensus 424 ~w~~~d~~~~~W~~l~----p~~R~~~~~~vl~-g~lYviGG~ 461 (555)
....|+.+.++|..+. |.+|+.|++++.- |.+|+.||.
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGE 141 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGE 141 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccc
Confidence 3446888899998873 3889999988876 899999995
No 57
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=86.75 E-value=0.51 Score=38.14 Aligned_cols=46 Identities=20% Similarity=0.427 Sum_probs=31.8
Q ss_pred CccchHHHHHHHhcccchhhhHHHHHHHHhcC--CCChhhHHHHHhccc
Q 008736 211 TTPTALLDVLMAADKFEVASCMRYCSRLLRNL--PMTCESALLYLDLPS 257 (555)
Q Consensus 211 ~~~~~v~~lL~aAd~l~l~~L~~~C~~~L~~l--~l~~~n~~~~l~~a~ 257 (555)
+. ..+.+|+.||++|+|+.|.+.|++++..+ ..+++..-.++.+..
T Consensus 12 ~~-~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~ 59 (78)
T PF01466_consen 12 DN-DELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIEN 59 (78)
T ss_dssp -H-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---
T ss_pred CH-HHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCC
Confidence 44 68999999999999999999999998762 344555555555443
No 58
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.32 E-value=1.5 Score=45.24 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=50.6
Q ss_pred cceeEecccc--ccceeeccC---CCceeEEEEEECCcEEEEcccCCccccccEEEEEeeecccCCCCcceeeccccceE
Q 008736 422 QQCVVYLDLK--REECAHLFP---AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAAR 496 (555)
Q Consensus 422 ~~~w~~~d~~--~~~W~~l~p---~~R~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~~~gG~~~~~~l~s~V~~~~~Er 496 (555)
...|..+|.+ ...|+.++. ..|-....++++|+||+.||...... .... .++.+ -+
T Consensus 57 G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~-~~~~------------~~nd~------Y~ 117 (381)
T COG3055 57 GTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVS-SSPQ------------VFNDA------YR 117 (381)
T ss_pred CccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCC-CCce------------Eeeee------EE
Confidence 3467777765 357998864 77888899999999999999732211 1111 12343 89
Q ss_pred ecC---CCceecCCCCceeecccee
Q 008736 497 IKP---TEEYVSKYKGNYTFTGGKA 518 (555)
Q Consensus 497 Ydp---~W~~va~m~~~~~~~g~~~ 518 (555)
||| +|..+.-... +-..|..+
T Consensus 118 y~p~~nsW~kl~t~sP-~gl~G~~~ 141 (381)
T COG3055 118 YDPSTNSWHKLDTRSP-TGLVGAST 141 (381)
T ss_pred ecCCCChhheeccccc-ccccccee
Confidence 999 9998765443 22555443
No 59
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=86.29 E-value=1.2 Score=47.74 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=28.9
Q ss_pred eccccccceee-----ccCCCceeEEEEEECCcEEEEccc
Q 008736 427 YLDLKREECAH-----LFPAGRIYSQAFHLGGQGFFLSAH 461 (555)
Q Consensus 427 ~~d~~~~~W~~-----l~p~~R~~~~~~vl~g~lYviGG~ 461 (555)
.+|..+-.|.. ++|.+|.-|.+.++|+++|++||.
T Consensus 234 ~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGW 273 (830)
T KOG4152|consen 234 TLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGW 273 (830)
T ss_pred EEecceeecccccccCCCCCCcccccceeecceeEEecce
Confidence 46666666764 456999999999999999999996
No 60
>PF13964 Kelch_6: Kelch motif
Probab=85.85 E-value=1.1 Score=32.54 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=23.0
Q ss_pred cceeeecccceeeecccccceeEeccccccceeeccC
Q 008736 404 ERAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFP 440 (555)
Q Consensus 404 ~~~~~~~~~~~ve~ydp~~~~w~~~d~~~~~W~~l~p 440 (555)
+.+|+.++...- ....+.+..||+.+++|..+++
T Consensus 12 ~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~ 45 (50)
T PF13964_consen 12 GKIYVFGGYDNS---GKYSNDVERYDPETNTWEQLPP 45 (50)
T ss_pred CEEEEECCCCCC---CCccccEEEEcCCCCcEEECCC
Confidence 357776664321 3456677788888888888876
No 61
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=83.91 E-value=3.4 Score=36.38 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=57.9
Q ss_pred EEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHhcCcccc----------------------
Q 008736 153 TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLST---------------------- 210 (555)
Q Consensus 153 ~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i---------------------- 210 (555)
.|.+.+.+ |-+|-..+.|+.. +..-.+.++.+++...+|..+++|+-..+-+.
T Consensus 13 ~F~vd~~i-AerSiLikN~l~d----~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~F 87 (158)
T COG5201 13 IFRVDENI-AERSILIKNMLCD----STACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFF 87 (158)
T ss_pred EEEehHHH-HHHHHHHHHHhcc----ccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHH
Confidence 46665554 4567777777654 22222334445999999999999995432211
Q ss_pred ---CccchHHHHHHHhcccchhhhHHHHHHHHhc
Q 008736 211 ---TTPTALLDVLMAADKFEVASCMRYCSRLLRN 241 (555)
Q Consensus 211 ---~~~~~v~~lL~aAd~l~l~~L~~~C~~~L~~ 241 (555)
+. ..+.++..+|++|.++.|.+.|++.+.+
T Consensus 88 m~vDq-emL~eI~laaNYL~ikpLLd~gCKivae 120 (158)
T COG5201 88 MEVDQ-EMLLEICLAANYLEIKPLLDLGCKIVAE 120 (158)
T ss_pred HHhhH-HHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 11 4578899999999999999999998876
No 62
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=83.73 E-value=0.67 Score=47.71 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=101.9
Q ss_pred eEEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHhcCccccCc-cchHHHHHHHhcccchhh
Q 008736 152 KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT-PTALLDVLMAADKFEVAS 230 (555)
Q Consensus 152 ~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~-~~~v~~lL~aAd~l~l~~ 230 (555)
..+.+|+.+|+..|+.|..+....-..+....+.+. .++..++..+.+++|.. ++-.+ ..-...++.+...+.++.
T Consensus 36 ~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~ 112 (319)
T KOG1778|consen 36 DLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQ 112 (319)
T ss_pred hhhHHHHhcccccchHHHHHHhhhcchhhhhcceee--cccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccC
Confidence 359999999999999999876554222233445554 78889999999999998 33222 134567777778899999
Q ss_pred hHHHHHHHHhcCCCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHHHhhccchhhh
Q 008736 231 CMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVL 291 (555)
Q Consensus 231 L~~~C~~~L~~l~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~efl 291 (555)
++..|...+..--++..|+...+..+..+ ....|..++...+...|....+ ++.+.
T Consensus 113 ~~~d~~~~~~~~~~~~r~~flvl~~~~~~----~~~~lr~a~hss~~~~~~~H~~-t~~~~ 168 (319)
T KOG1778|consen 113 PKADCDPILECGLFDKRNVFLVLQLAEHC----DFSDLRRAKHSSIMLLFDLHLQ-TEKWF 168 (319)
T ss_pred ccccCCccccchhhhhHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHhc-ccCce
Confidence 99999888876236788899999998888 7889999999999999998887 66544
No 63
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=83.58 E-value=3.1 Score=41.81 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=55.5
Q ss_pred CCceeEEEEEECCcEEEEcccCCccc-------------------------------------cccEEEEEeeecccCCC
Q 008736 441 AGRIYSQAFHLGGQGFFLSAHCNMDQ-------------------------------------QSSFHCFGLFLGMQEKG 483 (555)
Q Consensus 441 ~~R~~~~~~vl~g~lYviGG~~~~~~-------------------------------------~rs~~~y~~~gG~~~~~ 483 (555)
.+-.+|-+..-++.+|++||+.-.+. .-.-+-|-++||+....
T Consensus 153 dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 153 DGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred CCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccc
Confidence 77788888888999999999832000 01113444788884322
Q ss_pred --C-------cceeeccccceEecCCCceecCCCCceeeccceeecccccCCCccc
Q 008736 484 --S-------VSFAVDYEFAARIKPTEEYVSKYKGNYTFTGGKAVGYRNLFGIPWT 530 (555)
Q Consensus 484 --~-------l~s~V~~~~~ErYdp~W~~va~m~~~~~~~g~~~~g~~~~~~~~~~ 530 (555)
+ ++. ...++.|+=-|+|+ +..+..|++.|+..=.|.-|++||-.
T Consensus 233 QKRm~C~~V~Ldd-~~I~ie~~E~P~Wt--~dI~hSrtWFGgs~G~G~~Li~iP~e 285 (337)
T PF03089_consen 233 QKRMECNTVSLDD-DGIHIEEREPPEWT--GDIKHSRTWFGGSMGKGSALIGIPSE 285 (337)
T ss_pred eeeeeeeEEEEeC-CceEeccCCCCCCC--CCcCcCccccccccCCceEEEEECCC
Confidence 1 111 12234466666997 56788899998887667777777753
No 64
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=83.03 E-value=1.8 Score=31.23 Aligned_cols=44 Identities=16% Similarity=0.037 Sum_probs=27.0
Q ss_pred ceeeecccceeeecccccceeEeccccccceeeccC--CCceeEEEEE
Q 008736 405 RAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFP--AGRIYSQAFH 450 (555)
Q Consensus 405 ~~~~~~~~~~ve~ydp~~~~w~~~d~~~~~W~~l~p--~~R~~~~~~v 450 (555)
.+|+.++... +. ....+....||+.+++|..+.. .+|..|++++
T Consensus 3 ~~~vfGG~~~-~~-~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 3 KLYVFGGYDD-DG-GTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred EEEEECCcCC-CC-CCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 3555555431 11 2223445567888888887744 8899999876
No 65
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=82.95 E-value=0.35 Score=49.96 Aligned_cols=84 Identities=12% Similarity=0.007 Sum_probs=56.2
Q ss_pred CeeEEEEE---eEEEeehhhccccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHhcCccccCccchHHHHH
Q 008736 144 DLSTVLRV---KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVL 220 (555)
Q Consensus 144 ~~DV~l~v---~~f~aHr~ILaa~S~yF~amf~~~~~Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v~~lL 220 (555)
-.|+++.+ +.|.|||..|+++|.+|..-+..-+. ...+|+-. .+-+.+|..+++|+|-..-.+-. +.-..|+
T Consensus 149 ~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~--~v~~~~f~~flk~lyl~~na~~~-~qynall 223 (516)
T KOG0511|consen 149 CHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAH--RVILSAFSPFLKQLYLNTNAEWK-DQYNALL 223 (516)
T ss_pred ccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhhh--hhhHhhhhHHHHHHHHhhhhhhh-hHHHHHH
Confidence 34777766 34999999999999988655443221 22344322 67889999999999976322322 4456777
Q ss_pred HHhcccchhhhH
Q 008736 221 MAADKFEVASCM 232 (555)
Q Consensus 221 ~aAd~l~l~~L~ 232 (555)
.+..+|++..|.
T Consensus 224 si~~kF~~e~l~ 235 (516)
T KOG0511|consen 224 SIEVKFSKEKLS 235 (516)
T ss_pred hhhhhccHHHhH
Confidence 777777776654
No 66
>PLN02772 guanylate kinase
Probab=76.78 E-value=4.3 Score=43.15 Aligned_cols=62 Identities=5% Similarity=0.041 Sum_probs=42.1
Q ss_pred CCceeEEEEEECCcEEEEcccCCccccccEEEEEeeecccCCCCcceeeccccceEecC---CCcee---cCCCCceeec
Q 008736 441 AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYV---SKYKGNYTFT 514 (555)
Q Consensus 441 ~~R~~~~~~vl~g~lYviGG~~~~~~~rs~~~y~~~gG~~~~~~l~s~V~~~~~ErYdp---~W~~v---a~m~~~~~~~ 514 (555)
.++.++.++++|+++|++||.+... .+++.| -+||+ +|..- ..-|.+|-.+
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~------------------~~~~~v-----~i~D~~t~~W~~P~V~G~~P~~r~Gh 79 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGN------------------TLSIGV-----QILDKITNNWVSPIVLGTGPKPCKGY 79 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCc------------------cccceE-----EEEECCCCcEecccccCCCCCCCCcc
Confidence 5677899999999999999864321 122233 56666 55543 3557778888
Q ss_pred cceeecccccC
Q 008736 515 GGKAVGYRNLF 525 (555)
Q Consensus 515 g~~~~g~~~~~ 525 (555)
.+++++...+.
T Consensus 80 Sa~v~~~~ril 90 (398)
T PLN02772 80 SAVVLNKDRIL 90 (398)
T ss_pred eEEEECCceEE
Confidence 88888766654
No 67
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=75.91 E-value=2.4 Score=30.02 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=20.7
Q ss_pred cceeeecccceeeecccccceeEeccccccceeeccC
Q 008736 404 ERAYKYRPVKVVEFELPRQQCVVYLDLKREECAHLFP 440 (555)
Q Consensus 404 ~~~~~~~~~~~ve~ydp~~~~w~~~d~~~~~W~~l~p 440 (555)
..+|+.++... ....++++..||+.+++|..+++
T Consensus 12 ~~iyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 12 NKIYVIGGYDG---NNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp TEEEEEEEBES---TSSBEEEEEEEETTTTEEEEEEE
T ss_pred CEEEEEeeecc---cCceeeeEEEEeCCCCEEEEcCC
Confidence 35677666432 23345666677777777777654
No 68
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=71.56 E-value=2.1 Score=43.90 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=45.7
Q ss_pred CCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHHHhhccchhhhCCChhhhccc
Q 008736 243 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAV 301 (555)
Q Consensus 243 ~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~efl~L~~~~L~~L 301 (555)
.++++|++.++--++.. .++.|.+.|+.|+..|+.+++...-.+.-|+.+.|..|
T Consensus 71 ~l~~~NvvsIliSS~FL----~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFL----QMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred cCCcCcEEEeEehhhhh----ccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence 68999999998766655 78999999999999999999983345666888777766
No 69
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=65.70 E-value=29 Score=35.28 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=54.0
Q ss_pred EEEeehhhccccCH-HHHHhhcCCCC---CCCccEEEEecCCCCHHHHHHHHHHHhcCccccCccchHHHHHHHhcccch
Q 008736 153 TVHISSPILAAKSP-FFYKLFSNGMR---ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEV 228 (555)
Q Consensus 153 ~f~aHr~ILaa~S~-yF~amf~~~~~---Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~l~l 228 (555)
.|-+.+.+|.+.-. -.-.||.++.. .+...+..+. ++++..+|+++|+|--||.+.....-.|.+|-+|.|+|.|
T Consensus 106 rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLli 184 (438)
T KOG3840|consen 106 RFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLV 184 (438)
T ss_pred EEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEe
Confidence 47777777765421 23456655432 2223455553 5899999999999999999987664678888888888877
Q ss_pred hh
Q 008736 229 AS 230 (555)
Q Consensus 229 ~~ 230 (555)
+.
T Consensus 185 pF 186 (438)
T KOG3840|consen 185 PF 186 (438)
T ss_pred ec
Confidence 64
No 70
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=65.11 E-value=28 Score=32.31 Aligned_cols=96 Identities=14% Similarity=0.154 Sum_probs=70.1
Q ss_pred CCCeeEEEEEe-E-EEeehhhccccCHHHHHhhcCCCCCC----Cc-cEEEEecCCCCHHHHHHHHHHHhcCccccCccc
Q 008736 142 SMDLSTVLRVK-T-VHISSPILAAKSPFFYKLFSNGMRES----EQ-RYVTLRIHASEEAALMELLNFMYSSTLSTTTPT 214 (555)
Q Consensus 142 ~~~~DV~l~v~-~-f~aHr~ILaa~S~yF~amf~~~~~Es----~~-~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~~~ 214 (555)
|...=|.+.|+ + |.--|.-|..-+.-|..-|-+.-++. .. ...-| +-+|.-|.-+|+|+-.|++.++. -
T Consensus 18 g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI---DRDP~~FgpvLNylRhgklvl~~-l 93 (210)
T KOG2715|consen 18 GVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI---DRDPFYFGPVLNYLRHGKLVLNK-L 93 (210)
T ss_pred CceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe---ccCcchHHHHHHHHhcchhhhhh-h
Confidence 33344555563 3 77788888888866766665433221 11 22333 67899999999999999999887 5
Q ss_pred hHHHHHHHhcccchhhhHHHHHHHHhc
Q 008736 215 ALLDVLMAADKFEVASCMRYCSRLLRN 241 (555)
Q Consensus 215 ~v~~lL~aAd~l~l~~L~~~C~~~L~~ 241 (555)
.=..+|.-|++|.+++|.++..+.|.+
T Consensus 94 ~eeGvL~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 94 SEEGVLEEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred hhhccchhhhccCChHHHHHHHHHHHH
Confidence 667899999999999999888887765
No 71
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.87 E-value=5.9 Score=41.09 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=29.3
Q ss_pred ceeEeccccccceeec---cCCCceeEEEEEECC-cEEEEcccC
Q 008736 423 QCVVYLDLKREECAHL---FPAGRIYSQAFHLGG-QGFFLSAHC 462 (555)
Q Consensus 423 ~~w~~~d~~~~~W~~l---~p~~R~~~~~~vl~g-~lYviGG~~ 462 (555)
+..++|||..|+|+.+ .|.+...+.++.+++ ++|+.||++
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn 156 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVN 156 (381)
T ss_pred eeeEEecCCCChhheeccccccccccceeEecCCceEEEEcccc
Confidence 3455566666666665 346667788889988 899999974
No 72
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=62.38 E-value=20 Score=29.69 Aligned_cols=81 Identities=11% Similarity=0.185 Sum_probs=47.3
Q ss_pred HHHHHHhcccchhhhHHHHHHHHhcCCC------------ChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHH---
Q 008736 217 LDVLMAADKFEVASCMRYCSRLLRNLPM------------TCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYK--- 281 (555)
Q Consensus 217 ~~lL~aAd~l~l~~L~~~C~~~L~~l~l------------~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~--- 281 (555)
.+++..|..|+++.|.+.|.+|+.. ++ +.+....++.--... . ..-..+.+++..|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~-nf~~v~~~~~f~~L~~~~l~~iL~~~~l~-v-~~E~~v~~av~~W~~~~~~~r~ 78 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAK-NFNEVSKSDEFLELPFDQLIEILSSDDLN-V-SSEDDVFEAVLRWLKHNPENRE 78 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH-THHHHTTSHHHHCS-HHHHHHHHHTSS---E-CTCCCHHHHHHHHHHCTHHHHT
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHH-HHHHHccchhhhcCCHHHHHHHHhccccc-c-ccHHHHHHHHHHHHHhCHHHHH
Confidence 5789999999999999999999976 33 233333343321110 0 0124677888888876654
Q ss_pred ----HhhccchhhhCCChhhhccc
Q 008736 282 ----DISKFQEEVLNLPLAGIEAV 301 (555)
Q Consensus 282 ----~v~~~~~efl~L~~~~L~~L 301 (555)
.+.+ .=.|..|+.+.|...
T Consensus 79 ~~~~~Ll~-~iR~~~l~~~~L~~~ 101 (103)
T PF07707_consen 79 EHLKELLS-CIRFPLLSPEELQNV 101 (103)
T ss_dssp TTHHHHHC-CCHHHCT-HHHHHHC
T ss_pred HHHHHHHH-hCCcccCCHHHHHHH
Confidence 3333 334555665555443
No 73
>PHA02629 A-type inclusion body protein; Provisional
Probab=52.45 E-value=12 Score=27.26 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCchhhHHHHHH
Q 008736 49 LPDSKSDGDACSSIADWARNR 69 (555)
Q Consensus 49 ~~~~~~~~~~c~s~~~w~~~r 69 (555)
+.|+...|.||+|+-++-|++
T Consensus 14 d~gng~~gngc~s~c~ferk~ 34 (61)
T PHA02629 14 DGGNGNGGNGCTSSCEFERKI 34 (61)
T ss_pred ccCCCCCCCCccchhHhhHHH
Confidence 557788999999998887644
No 74
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=50.64 E-value=21 Score=37.67 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=61.7
Q ss_pred chHHHHHHHhcccchhhhHHHHHHHHhcCCCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHHHhhccchhhhCC
Q 008736 214 TALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNL 293 (555)
Q Consensus 214 ~~v~~lL~aAd~l~l~~L~~~C~~~L~~l~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~~v~~~~~efl~L 293 (555)
+||..++.+|..|+++.|...|..|+-. + +-.++.-. +...|.+. .+++++. .+.|-..
T Consensus 148 ~NvCmifdaA~ly~l~~Lt~~C~mfmDr-n-----A~~lL~~~-------sFn~LSk~-------sL~e~l~-RDsFfAp 206 (620)
T KOG4350|consen 148 ENVCMIFDAAYLYQLTDLTDYCMMFMDR-N-----ADQLLEDP-------SFNRLSKD-------SLKELLA-RDSFFAP 206 (620)
T ss_pred cceeeeeeHHHHhcchHHHHHHHHHHhc-C-----HHhhhcCc-------chhhhhHH-------HHHHHHh-hhcccch
Confidence 6888999999999999999999999866 2 22333211 12222222 2223333 4455444
Q ss_pred ChhhhccccccccccCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhccccC-CCCCHHHHhh
Q 008736 294 PLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRF-PYMTCRKLKK 357 (555)
Q Consensus 294 ~~~~L~~LL~sd~L~V~sE~~V~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf-~lls~~~L~~ 357 (555)
....+.++.+=..-+. .+-+..++..++-. .-.+ .+||..||- ++++|+.+.+
T Consensus 207 E~~IFlAv~~W~~~Ns---ke~~k~~~~~VRLP-------Lm~l-teLLnvVRPsGllspD~iLD 260 (620)
T KOG4350|consen 207 ELKIFLAVRSWHQNNS---KEASKVLLELVRLP-------LMTL-TELLNVVRPSGLLSPDTILD 260 (620)
T ss_pred HHHHHHHHHHHHhcCc---hhhHHHHHHHHhhh-------hccH-HHHHhccCcccCcCHHHHHH
Confidence 4444444443333221 22344455555442 1123 567888885 4567777665
No 75
>PLN02772 guanylate kinase
Probab=47.58 E-value=32 Score=36.70 Aligned_cols=55 Identities=13% Similarity=-0.027 Sum_probs=37.2
Q ss_pred cceeeecccceeeecccccceeEeccccccceeec-----cCCCceeEEEEEEC-CcEEEEccc
Q 008736 404 ERAYKYRPVKVVEFELPRQQCVVYLDLKREECAHL-----FPAGRIYSQAFHLG-GQGFFLSAH 461 (555)
Q Consensus 404 ~~~~~~~~~~~ve~ydp~~~~w~~~d~~~~~W~~l-----~p~~R~~~~~~vl~-g~lYviGG~ 461 (555)
+.+|+.++.+. +.+..+...+||+.++.|..- .|.+|-.|++++++ +.|+++++.
T Consensus 35 dk~yv~GG~~d---~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 35 DKTYVIGGNHE---GNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred CEEEEEcccCC---CccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCC
Confidence 35677665431 222455666777777777754 34889999999995 679999854
No 76
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=47.50 E-value=52 Score=32.18 Aligned_cols=88 Identities=11% Similarity=0.153 Sum_probs=58.8
Q ss_pred EEE-eEEEeehhh-c-cccCHHHHHhhcCCCC--CCCccEEEEecCCCCHHHHHHHHHHHhcCccccCc-cchHHHHHHH
Q 008736 149 LRV-KTVHISSPI-L-AAKSPFFYKLFSNGMR--ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT-PTALLDVLMA 222 (555)
Q Consensus 149 l~v-~~f~aHr~I-L-aa~S~yF~amf~~~~~--Es~~~~I~L~~~~v~~~~f~~lL~fiYtg~l~i~~-~~~v~~lL~a 222 (555)
+.| +.++.|+.- | +-.-....+||++... ........| +=+-..|+.+|+|+-|..+.+.+ ..++..|..-
T Consensus 13 lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rE 89 (221)
T KOG2723|consen 13 LNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALLLPEDFAEVERLVRE 89 (221)
T ss_pred eccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccccchhhhhHHHHHHH
Confidence 444 566666543 3 3334456677776322 223345566 56778999999999996665544 2578999999
Q ss_pred hcccchhhhHHHHHHHH
Q 008736 223 ADKFEVASCMRYCSRLL 239 (555)
Q Consensus 223 Ad~l~l~~L~~~C~~~L 239 (555)
|++|+++.+...+.+-.
T Consensus 90 A~f~~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 90 AEFFQLEAPVTYLLNSG 106 (221)
T ss_pred HHHHccccHHHHHhccc
Confidence 99999998876654443
No 77
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=33.71 E-value=1.2e+02 Score=24.40 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=21.5
Q ss_pred HHHHHHhcccchhhhHHHHHHHHhc
Q 008736 217 LDVLMAADKFEVASCMRYCSRLLRN 241 (555)
Q Consensus 217 ~~lL~aAd~l~l~~L~~~C~~~L~~ 241 (555)
.+++.+|+.|+.+.|.+.|.+|+.+
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~ 26 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILK 26 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHH
Confidence 3577889999999999999999765
No 78
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=30.26 E-value=52 Score=27.40 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=28.9
Q ss_pred CC-hhhHHHHHhccchhhhhhchHHHHHHHHHHHHHh
Q 008736 244 MT-CESALLYLDLPSSVLMADAVQPLTDTAKQFLAAR 279 (555)
Q Consensus 244 l~-~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~n 279 (555)
++ .+++..++.+|..+ .++.|.+.|.+++.++
T Consensus 78 ~~~~~~~~~ll~lA~~~----~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 78 INSDENVEELLELADKL----QIPELKKACEKFLQES 110 (111)
T ss_dssp EE-TTTHHHHHHHHHHT----TBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh----CcHHHHHHHHHHHHhC
Confidence 44 78999999999999 9999999999999876
No 79
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=28.44 E-value=68 Score=35.01 Aligned_cols=46 Identities=7% Similarity=-0.213 Sum_probs=29.1
Q ss_pred eeeecccccceeEeccccccceeeccCCCceeEEEEEECCc--EEEEccc
Q 008736 414 VVEFELPRQQCVVYLDLKREECAHLFPAGRIYSQAFHLGGQ--GFFLSAH 461 (555)
Q Consensus 414 ~ve~ydp~~~~w~~~d~~~~~W~~l~p~~R~~~~~~vl~g~--lYviGG~ 461 (555)
.++.+|..++.|.+++..+.. .-.|....-|+++|.+.+ +||.||+
T Consensus 347 DfW~FDi~~~~W~~ls~dt~~--dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 347 DFWRFDIDTNTWMLLSEDTAA--DGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred ceEEEecCCceeEEecccccc--cCCcceeecceeeEecCcceEEEecCe
Confidence 345556666666654332221 113455678999999877 9999996
No 80
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=22.52 E-value=85 Score=31.22 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=24.6
Q ss_pred cceeeccC---CCceeEEEEEE-CCcEEEEcccCC
Q 008736 433 EECAHLFP---AGRIYSQAFHL-GGQGFFLSAHCN 463 (555)
Q Consensus 433 ~~W~~l~p---~~R~~~~~~vl-~g~lYviGG~~~ 463 (555)
..|..... .+|.|..+..| +|.++++||..+
T Consensus 105 ~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 105 CDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNN 139 (243)
T ss_pred CCceECcccccCCCccccceECCCCCEEEEeCcCC
Confidence 45766543 88999999988 689999999754
No 81
>PF13799 DUF4183: Domain of unknown function (DUF4183)
Probab=21.00 E-value=55 Score=26.91 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=21.7
Q ss_pred ecccccCCCccceEeecC-------------Cccccccceeeeeeee
Q 008736 519 VGYRNLFGIPWTAFMADD-------------SIYFINGNLHLRAELT 552 (555)
Q Consensus 519 ~g~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 552 (555)
+..-+-++|+-+.|..|+ ..+||||||.-..--|
T Consensus 14 ~~~~~~~tI~a~~f~dD~g~~~t~~~~~~sY~NLyINGvLQ~~~~yt 60 (84)
T PF13799_consen 14 LALGGTTTIPAPSFTDDAGNAVTAFPAVNSYYNLYINGVLQPGSLYT 60 (84)
T ss_pred ccccCceEeechhhccCCCCeeEeecccceEEEEEEEEEecCCcceE
Confidence 333344567777776655 2579999998654433
No 82
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=20.89 E-value=84 Score=31.25 Aligned_cols=26 Identities=12% Similarity=-0.121 Sum_probs=17.6
Q ss_pred CCceec-CCCCceeecc--------ceeecccccC
Q 008736 500 TEEYVS-KYKGNYTFTG--------GKAVGYRNLF 525 (555)
Q Consensus 500 ~W~~va-~m~~~~~~~g--------~~~~g~~~~~ 525 (555)
.|...+ .|..+|.+.. +.++||++-+
T Consensus 106 ~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~ 140 (243)
T PF07250_consen 106 DWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNP 140 (243)
T ss_pred CceECcccccCCCccccceECCCCCEEEEeCcCCC
Confidence 677654 5899988864 3477777543
No 83
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=20.19 E-value=85 Score=34.09 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=32.2
Q ss_pred CCChhhHHHHHhccchhhhhhchHHHHHHHHHHHHHhHHH
Q 008736 243 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKD 282 (555)
Q Consensus 243 ~l~~~n~~~~l~~a~~~~~a~~~~~L~~~~~~fi~~nf~~ 282 (555)
.+.++|++.++..|..| ..+.|++.|.+||..|...
T Consensus 184 ~~~~dtvi~tl~~AkKY----~VpaLer~CVkflr~~l~~ 219 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKY----LVPALERQCVKFLRKNLMA 219 (521)
T ss_pred hhhHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHhcCC
Confidence 57899999999999999 8999999999999887543
Done!