Query 008737
Match_columns 555
No_of_seqs 148 out of 168
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 15:57:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07912 Tweety_N N-terminal do 100.0 2.1E-34 4.5E-39 307.3 36.1 355 84-521 20-406 (418)
2 PF04906 Tweety: Tweety; Inte 99.9 7.8E-24 1.7E-28 226.9 28.7 357 85-521 1-383 (406)
3 KOG4433 Tweety transmembrane/c 99.8 1E-18 2.3E-23 185.3 29.1 358 84-520 24-406 (526)
4 PF05478 Prominin: Prominin; 99.3 4.7E-10 1E-14 130.4 26.5 147 100-258 84-243 (806)
5 KOG4331 Polytopic membrane pro 98.5 2.8E-07 6E-12 104.5 9.6 152 90-254 88-252 (865)
6 KOG4433 Tweety transmembrane/c 97.5 0.0025 5.5E-08 69.4 16.0 121 112-255 45-167 (526)
7 cd07912 Tweety_N N-terminal do 97.4 0.004 8.7E-08 67.9 15.9 65 261-328 207-273 (418)
8 PF04906 Tweety: Tweety; Inte 97.4 0.0035 7.5E-08 68.2 15.0 175 118-299 34-235 (406)
9 PF05478 Prominin: Prominin; 92.8 1.8 4E-05 51.3 14.6 52 470-521 739-790 (806)
10 PF00957 Synaptobrevin: Synapt 77.1 20 0.00044 30.4 8.8 11 229-239 41-51 (89)
11 PF03904 DUF334: Domain of unk 73.5 63 0.0014 32.9 12.3 19 187-205 64-82 (230)
12 PF15099 PIRT: Phosphoinositid 68.9 1.6 3.5E-05 40.3 0.1 41 498-540 80-123 (129)
13 PF06103 DUF948: Bacterial pro 64.1 81 0.0018 26.8 9.7 17 151-167 5-21 (90)
14 PF04156 IncA: IncA protein; 63.4 47 0.001 32.0 9.1 37 274-310 25-61 (191)
15 KOG2348 Urea transporter [Amin 62.7 11 0.00023 42.2 4.8 58 248-310 549-607 (667)
16 COG4768 Uncharacterized protei 61.4 63 0.0014 30.4 8.8 19 229-247 90-108 (139)
17 PF07889 DUF1664: Protein of u 61.3 59 0.0013 30.2 8.7 47 162-208 18-64 (126)
18 KOG4331 Polytopic membrane pro 61.1 90 0.0019 37.3 12.0 54 468-521 758-811 (865)
19 PF10873 DUF2668: Protein of u 58.7 5.5 0.00012 37.7 1.5 35 98-134 52-87 (155)
20 PF12273 RCR: Chitin synthesis 54.7 7.4 0.00016 35.7 1.7 11 500-510 2-12 (130)
21 TIGR00383 corA magnesium Mg(2+ 53.2 1.8E+02 0.0039 30.1 12.0 16 259-274 260-275 (318)
22 PF03908 Sec20: Sec20; InterP 52.1 1.5E+02 0.0033 25.4 9.4 14 191-204 5-18 (92)
23 COG5130 YIP3 Prenylated rab ac 52.0 2.2E+02 0.0048 27.2 10.8 12 194-205 17-28 (169)
24 COG5336 Uncharacterized protei 47.8 1.4E+02 0.003 27.3 8.5 67 229-296 18-87 (116)
25 PF13908 Shisa: Wnt and FGF in 47.5 9.7 0.00021 36.7 1.3 8 128-135 97-104 (179)
26 PF06084 Cytomega_TRL10: Cytom 46.1 10 0.00022 34.7 1.1 34 497-530 55-88 (150)
27 PF12732 YtxH: YtxH-like prote 45.5 1E+02 0.0022 25.4 7.0 44 154-200 3-46 (74)
28 PF02038 ATP1G1_PLM_MAT8: ATP1 43.1 15 0.00033 28.8 1.5 28 100-131 11-38 (50)
29 PF06637 PV-1: PV-1 protein (P 41.3 3E+02 0.0064 30.4 11.2 37 145-183 24-61 (442)
30 COG0598 CorA Mg2+ and Co2+ tra 40.1 2.2E+02 0.0047 30.1 10.2 20 259-281 264-283 (322)
31 PF11169 DUF2956: Protein of u 39.1 27 0.00058 31.3 2.6 18 292-309 85-102 (103)
32 KOG3882 Tetraspanin family int 38.1 53 0.0011 32.7 5.0 32 148-179 84-115 (237)
33 PF00558 Vpu: Vpu protein; In 38.1 21 0.00045 30.8 1.7 19 503-521 7-25 (81)
34 PRK09546 zntB zinc transporter 37.5 3.6E+02 0.0078 28.3 11.3 20 259-281 266-285 (324)
35 PF11884 DUF3404: Domain of un 36.4 25 0.00054 36.5 2.3 44 487-530 217-260 (262)
36 COG1823 Predicted Na+/dicarbox 35.5 6.6E+02 0.014 27.9 17.0 78 234-311 200-285 (458)
37 PF05545 FixQ: Cbb3-type cytoc 34.5 59 0.0013 24.8 3.6 17 505-521 14-30 (49)
38 KOG3882 Tetraspanin family int 34.4 1.1E+02 0.0025 30.3 6.7 36 257-292 53-88 (237)
39 PF00957 Synaptobrevin: Synapt 32.2 3.1E+02 0.0067 23.1 8.2 22 230-251 35-59 (89)
40 PF06687 SUR7: SUR7/PalI famil 32.0 4.7E+02 0.01 25.2 10.9 24 235-258 96-119 (212)
41 PF03908 Sec20: Sec20; InterP 31.2 47 0.001 28.6 2.9 15 508-522 75-89 (92)
42 PRK01919 tatB sec-independent 31.2 1.8E+02 0.0038 28.5 7.0 33 223-255 58-90 (169)
43 PF11166 DUF2951: Protein of u 30.4 4E+02 0.0086 23.8 10.1 46 222-267 35-83 (98)
44 PF03904 DUF334: Domain of unk 29.6 6.3E+02 0.014 25.9 12.8 26 248-273 142-167 (230)
45 COG4615 PvdE ABC-type sideroph 28.9 8.9E+02 0.019 27.4 13.1 18 102-119 119-136 (546)
46 PRK10582 cytochrome o ubiquino 28.9 3.3E+02 0.0072 24.7 8.0 65 99-167 22-98 (109)
47 TIGR02847 CyoD cytochrome o ub 28.8 3.4E+02 0.0075 24.0 7.9 66 99-168 11-88 (96)
48 PF10267 Tmemb_cc2: Predicted 28.4 4.3E+02 0.0094 29.2 10.3 20 187-206 265-288 (395)
49 PF13908 Shisa: Wnt and FGF in 27.8 33 0.00071 33.1 1.5 28 108-135 80-107 (179)
50 PRK10404 hypothetical protein; 27.6 3.6E+02 0.0079 24.0 7.9 8 273-280 90-97 (101)
51 PF12729 4HB_MCP_1: Four helix 27.4 2.5E+02 0.0055 25.1 7.3 17 165-181 24-40 (181)
52 PF05957 DUF883: Bacterial pro 27.2 4E+02 0.0086 22.8 10.2 21 224-244 40-60 (94)
53 PTZ00358 hypothetical protein; 26.8 1.1E+02 0.0023 33.2 5.1 20 153-172 153-172 (367)
54 PF03172 Sp100: Sp100 domain; 26.2 26 0.00056 31.5 0.4 59 457-515 15-73 (103)
55 PF07662 Nucleos_tra2_C: Na+ d 26.0 2.5E+02 0.0054 28.4 7.3 54 249-303 48-108 (210)
56 KOG3202 SNARE protein TLG1/Syn 25.8 3.2E+02 0.007 28.1 8.2 26 229-254 183-208 (235)
57 PF14979 TMEM52: Transmembrane 25.6 86 0.0019 30.0 3.7 35 99-135 15-49 (154)
58 KOG2662 Magnesium transporters 25.1 3.3E+02 0.0072 30.2 8.5 22 261-282 350-371 (414)
59 KOG0860 Synaptobrevin/VAMP-lik 24.8 5.5E+02 0.012 23.7 10.0 11 229-239 67-77 (116)
60 PF11118 DUF2627: Protein of u 24.8 1.1E+02 0.0023 26.3 3.7 61 466-531 11-71 (77)
61 PF06749 DUF1218: Protein of u 24.7 1.8E+02 0.0039 25.4 5.4 19 160-178 48-66 (97)
62 PF13244 DUF4040: Domain of un 24.6 55 0.0012 27.1 2.1 26 94-119 12-37 (70)
63 COG3125 CyoD Heme/copper-type 24.6 3.5E+02 0.0076 24.7 7.3 64 100-167 25-100 (111)
64 COG4768 Uncharacterized protei 24.4 6.1E+02 0.013 24.0 9.0 10 176-185 27-36 (139)
65 PF10854 DUF2649: Protein of u 24.1 1E+02 0.0022 25.2 3.4 29 90-120 28-56 (67)
66 PF12191 stn_TNFRSF12A: Tumour 24.0 26 0.00056 32.6 0.0 31 504-534 82-112 (129)
67 PF14979 TMEM52: Transmembrane 23.6 1.1E+02 0.0023 29.4 4.0 28 488-515 7-34 (154)
68 KOG0811 SNARE protein PEP12/VA 23.0 4.5E+02 0.0097 27.6 8.8 16 222-237 208-223 (269)
69 PF11887 DUF3407: Protein of u 23.0 4.8E+02 0.01 26.9 9.1 35 223-257 95-129 (267)
70 COG2274 SunT ABC-type bacterio 22.9 1.1E+03 0.024 28.0 13.0 11 81-91 241-251 (709)
71 PF00804 Syntaxin: Syntaxin; 22.5 2.2E+02 0.0049 23.7 5.6 28 185-212 5-32 (103)
72 PF11239 DUF3040: Protein of u 22.2 3.1E+02 0.0067 23.1 6.3 26 219-244 6-31 (82)
73 PF07043 DUF1328: Protein of u 21.9 1.2E+02 0.0026 22.7 3.1 25 102-127 12-36 (39)
74 TIGR03141 cytochro_ccmD heme e 21.8 72 0.0016 24.1 2.0 33 497-530 4-36 (45)
75 PF11657 Activator-TraM: Trans 21.6 7.1E+02 0.015 23.7 9.4 13 261-273 125-137 (144)
76 smart00793 AgrB Accessory gene 21.5 3.1E+02 0.0068 26.6 7.0 22 84-107 63-84 (184)
77 PF13829 DUF4191: Domain of un 21.4 4.4E+02 0.0096 26.9 8.1 16 409-424 165-180 (224)
78 PRK13022 secF preprotein trans 21.3 4E+02 0.0087 27.9 8.2 24 304-327 184-207 (289)
79 PF06103 DUF948: Bacterial pro 21.2 5.1E+02 0.011 21.9 7.6 6 248-253 69-74 (90)
80 PF05393 Hum_adeno_E3A: Human 21.0 1.1E+02 0.0025 26.8 3.3 7 110-116 37-43 (94)
81 PRK11876 petM cytochrome b6-f 20.4 1.5E+02 0.0032 21.4 3.2 20 261-280 6-25 (32)
82 PRK11677 hypothetical protein; 20.4 5.2E+02 0.011 24.3 7.8 24 150-173 4-27 (134)
83 KOG4455 Uncharacterized conser 20.2 5.1E+02 0.011 23.6 7.3 25 242-266 19-43 (110)
84 PRK06280 hypothetical protein; 20.1 74 0.0016 27.1 2.0 24 96-119 20-43 (77)
85 COG0628 yhhT Predicted permeas 20.1 1E+03 0.022 25.1 14.3 10 320-329 285-294 (355)
No 1
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=100.00 E-value=2.1e-34 Score=307.26 Aligned_cols=355 Identities=17% Similarity=0.209 Sum_probs=229.9
Q ss_pred ccccccCcccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcccCC---CCCC-chhHHHHHHHHHHHHHH
Q 008737 84 HFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIK---GKES-ASSQRICLILLIVFTCA 159 (555)
Q Consensus 84 ~f~~Y~GG~nI~nkhYwaSV~fTgipg~~iA~~Wfi~fGl~l~~~~cc~~~~~~k---~~~s-~~~~~i~lilLllfTi~ 159 (555)
.|+..++.||++||||||||+||| +||++||+++|+++++.+||+|||+++ +|++ ..++.+++ ++++++
T Consensus 20 ~f~~v~~~F~p~~~~Y~~Sv~~~a----~iaavwlil~ll~ll~~~~~~CCcr~~~~~~k~~s~~c~~~sL---iiltL~ 92 (418)
T cd07912 20 TFHRVNSTFNPEDEIYQQSLLILA----SIPAACLILSLLFLLVYLITRCCDRKPTEERPRHSICCLKWSL---VIATLL 92 (418)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccHHHHHH---HHHHHH
Confidence 478889999999999999999999 499999998888877655544444333 2222 23444444 444444
Q ss_pred HHHHHhhhhcccccccccchhhhhHHhccchhHHHHHHHHHHHHhhhhhcccc-------cccc-c---cchhhhHHHHH
Q 008737 160 AAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVA-------QVFL-P---SAVMDDIDKLN 228 (555)
Q Consensus 160 ai~Gcivl~~Gn~kfh~~~~~t~~~vv~qa~~tv~tLrNVt~~L~~ak~~~V~-------~i~l-P---~dv~~~Id~l~ 228 (555)
+++|.+++|+||++||++++++.+++ +++|+++++++|++++++++-+..++ .++. | .+..+.++.++
T Consensus 93 ~~aaIi~~f~GN~~~h~gV~~t~~si-~~an~tv~~l~nqv~~l~~al~~t~~~~L~~L~~il~~~~~~~~~~~~~~~~q 171 (418)
T cd07912 93 CCAAIGVGLYGNDETHDGVVQLTYSL-RNANHTVAGIDNQTSDTEASLNVTVEPQLTNLEDIFDARVNKTDYLQIVQGLQ 171 (418)
T ss_pred HHHHHHHHhhccHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHhCCCcchhhHHHHHHHHH
Confidence 55565669999999999999999988 89999999999999999876543343 2222 2 12233334444
Q ss_pred HHHHHHHHHhhHH-----hHHhhHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHHHHHH
Q 008737 229 RDLSTAANTLADK-----TSENSAKIRKVFNAV---RS-ALITVAALMLLLSIIGLFLSIL-RHKHAIHIFILSGWLLVA 298 (555)
Q Consensus 229 ~~Lns~A~~L~~k-----i~~n~~~I~~~Ld~V---~~-~l~~vaavmL~La~lGlv~~~~-~~~~~~~~~~i~gwilv~ 298 (555)
..+.+..+++.+- ...|+.+|.+-.+.+ |. +.+.+..+.++++++++ +|+. +.|+.+++|+++|.+.++
T Consensus 172 ~~~~n~~~~~~~~~~~~~~~~~l~~i~~~~~~~E~~Rw~~~l~lL~~~lviC~~~l-~gl~r~Sr~~li~~s~~g~l~l~ 250 (418)
T cd07912 172 QMATNAAQQLTGIPFWSLVGVSLTKLADQVSLYESYRWLAYLGLLSLLLVICLVLL-VGLARHSRCLLIVFSVCGLFALI 250 (418)
T ss_pred HHHHHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHH
Confidence 5555555444322 123333333333332 31 12333334445555543 5555 578999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhHhhhhCCCCCCccccc----ccCCcccchhh---HHHHhHHHHHHHHHHHHHHHHHH
Q 008737 299 ITFILCGVFVILNNAISDTCMAMDEWVDHPHAETALSNI----LPCVDQRTTNK---SLIQSKEVITDIVNVVNQFVYNI 371 (555)
Q Consensus 299 ~twil~Gv~l~l~~~~~DtC~Am~e~~~~p~~~t~L~~i----LPCvd~~~a~~---~L~~sk~~i~~lv~~vN~~i~~i 371 (555)
++|++.|+|++.+++++|.|.++++|+.+.+..+-..|+ +.|.... +|+ .|.+++..+.+.-+++.....
T Consensus 251 ~~W~~~~~~l~~~v~~sDfC~~pd~yi~~~~~~~~~~di~~yy~~C~~~~-~npF~~~l~~~~~~l~~~~~~~~~~~~-- 327 (418)
T cd07912 251 ISWLSLGLYLASAVALSDFCVDPDDYVRNQTPSGLSSDILQYYLTCEPST-TNPFQQRLTESQRALTNMQSQVQGLLR-- 327 (418)
T ss_pred HHHHHHHHHHHHHHhhhhhhcCHHHHHHhccccccchHHHHHHhcCCCCC-CCcchHhhHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999998743212222 3454322 111 222222222222222221111
Q ss_pred hccCCCCCcccccccCCCCCCCCCCCCCCCcccccCCCCcccccchhcccccceeecCCCCCCCcccccCCCccchhHHH
Q 008737 372 ANANPSQDYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKVWQNYTCELSTSGSSAFGRCNSVGRVTPYFYK 451 (555)
Q Consensus 372 ~n~n~~~~~~~y~nqsgp~~p~lCnPf~~~~~~~~C~~gev~i~na~~v~~~~~C~~~~~~~~~~~~C~t~gr~tp~~y~ 451 (555)
.. -. .+.+.. +...
T Consensus 328 ----------------------------------------------------~~---~~-------~~~~~~----~~l~ 341 (418)
T cd07912 328 ----------------------------------------------------EA---VF-------EFPTAE----DNLL 341 (418)
T ss_pred ----------------------------------------------------Hh---cc-------cCCccc----chHH
Confidence 00 00 000000 1134
Q ss_pred HHHHHHHHHHHHHhhccccccCCCchhHHHHHhhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008737 452 ELVSAVTEIYALQLYTPRLLSLQDCNFVRDTFQNITSNYCPPLEHYLKIVNAGLGMISFGVLLCLLLWIL 521 (555)
Q Consensus 452 q~~a~~n~~~~L~~~~P~l~~L~~C~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wi~ 521 (555)
+++.-.|+....++ .|+.++||.-+++-+.+.....|-+-..++-.+ .+..+.+|.+++++.|+.
T Consensus 342 ~~~~~ln~~e~~l~---~l~a~ldCr~~h~~Y~~a~~g~C~~gl~Gl~~~--~l~s~~~a~~~~~lv~~~ 406 (418)
T cd07912 342 SLQGDLNSTEINLH---QLTALLDCRGLHKDYVEALRGLCYDGLEGLLYL--LLFSLLAALLFTILVCVD 406 (418)
T ss_pred HHHHHHHHHHHHHH---HHHhhcchHHHHHHHHHHHHccccchHHHHHHH--HHHHHHHHHHHHHHHHhc
Confidence 56666677666655 888999999999999999999999998887666 666777778888888776
No 2
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=99.93 E-value=7.8e-24 Score=226.87 Aligned_cols=357 Identities=13% Similarity=0.171 Sum_probs=212.9
Q ss_pred cccccCcccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcccCCCC--CCchhHHHHHHHHHHHHHHHHH
Q 008737 85 FRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGK--ESASSQRICLILLIVFTCAAAI 162 (555)
Q Consensus 85 f~~Y~GG~nI~nkhYwaSV~fTgipg~~iA~~Wfi~fGl~l~~~~cc~~~~~~k~~--~s~~~~~i~lilLllfTi~ai~ 162 (555)
||..++.|++.|+.|-+|++|-| .+|++|++. -+++++.+.||+||+||++ .+++.-.+..+.+++.++++.+
T Consensus 1 ~~~~~~~F~p~~~~Y~qsL~~la----~v~~~~l~l-~Ll~ll~yl~~~CC~r~~~~~~~~~~~~c~~~~~~ia~lvc~a 75 (406)
T PF04906_consen 1 FQPVSSTFNPQDEEYQQSLLILA----SVAAACLAL-SLLFLLIYLICRCCCRRPREEKSSRRCCCLTWSLVIATLVCCA 75 (406)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHhhCCCCCccccccCCcchHHHHHHHHHHHHH
Confidence 78889999999999999999988 678888874 3333332222222222222 1222112333445556666667
Q ss_pred HHhhhhcccccccccchhhhhHHhccchhHHHHHHHHHHHHhhhhhcc-------ccccc-cccchhhhHHHHHHHHHHH
Q 008737 163 GCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTIN-------VAQVF-LPSAVMDDIDKLNRDLSTA 234 (555)
Q Consensus 163 Gcivl~~Gn~kfh~~~~~t~~~vv~qa~~tv~tLrNVt~~L~~ak~~~-------V~~i~-lP~dv~~~Id~l~~~Lns~ 234 (555)
|.+++|+||++.|.++.+... -.+.++.+...+++.+...+..-... ...++ .|.+..+.++++++.+++.
T Consensus 76 aigvG~yGN~e~~~gv~~~~~-s~~~~n~t~~~i~~~v~~~~~~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~~~~v 154 (406)
T PF04906_consen 76 AIGVGFYGNSETNDGVYQLIY-SLRNANHTLSGIDNLVSDTTEALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQAENV 154 (406)
T ss_pred HHHcccccchhhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 778899999999998876543 33344445444544443332211111 11222 3445555666666655555
Q ss_pred HHHhhHHhH-----HhhHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 008737 235 ANTLADKTS-----ENSAKIRKVFNAV---RS-ALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCG 305 (555)
Q Consensus 235 A~~L~~ki~-----~n~~~I~~~Ld~V---~~-~l~~vaavmL~La~lGlv~~~~~~~~~~~~~~i~gwilv~~twil~G 305 (555)
.+++.+-.. .+...+.+-.+.+ |. +.+.+..+++++++++++--..+.|+.++.+.++|++.++++|++.|
T Consensus 155 ~~~l~~l~~~~~~~~~l~~~~~~~~~~E~yRw~~~~~lL~l~l~icl~~l~glar~Sk~~li~~~v~gll~lvisW~~~g 234 (406)
T PF04906_consen 155 VQQLDELPFWRNVSLSLEQLAEQVSFYEYYRWLAYLGLLILDLVICLLGLLGLARQSKCLLIVFSVLGLLALVISWISLG 234 (406)
T ss_pred HHHHhcCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEeeeccHHHHHHHHHHHH
Confidence 555432211 1222222222222 22 23444455566666654433446788899999999999999999999
Q ss_pred HHHHHHhhhhhhhHhhHhhhhCCCCCCccccc----ccCCcccchhh---HHHHhHHHHHHHHHHHHHHHHHHhccCCCC
Q 008737 306 VFVILNNAISDTCMAMDEWVDHPHAETALSNI----LPCVDQRTTNK---SLIQSKEVITDIVNVVNQFVYNIANANPSQ 378 (555)
Q Consensus 306 v~l~l~~~~~DtC~Am~e~~~~p~~~t~L~~i----LPCvd~~~a~~---~L~~sk~~i~~lv~~vN~~i~~i~n~n~~~ 378 (555)
++++..++++|.|+++++|+.+-+.+....|| +-|....+ |+ .+..+...+.+.-+++.......
T Consensus 235 ~~la~aV~~SDFC~~Pd~~i~~~~~~~~~~di~~YYl~C~~~~~-nPFqq~l~~~~~al~~~q~~~~~L~~~a------- 306 (406)
T PF04906_consen 235 LELAAAVGLSDFCVDPDTYILNQTQNETSADILQYYLTCSQSVS-NPFQQRLTSSQRALSNMQSQVQGLLREA------- 306 (406)
T ss_pred HHHHhccchhhhccCHHHHHHHhcccccchhHHHHhhcCCCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 99999999999999999999887666543344 56975432 33 34444333333322222222110
Q ss_pred CcccccccCCCCCCCCCCCCCCCcccccCCCCcccccchhcccccceeecCCCCCCCcccccCCCccchhHHHHHHHHHH
Q 008737 379 DYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKVWQNYTCELSTSGSSAFGRCNSVGRVTPYFYKELVSAVT 458 (555)
Q Consensus 379 ~~~~y~nqsgp~~p~lCnPf~~~~~~~~C~~gev~i~na~~v~~~~~C~~~~~~~~~~~~C~t~gr~tp~~y~q~~a~~n 458 (555)
.+ .+|+. + +.-.+++...|
T Consensus 307 -~~------------------------~fp~~--------------------------------~----~~l~~i~~~Ln 325 (406)
T PF04906_consen 307 -VP------------------------LFPTA--------------------------------Q----EPLLAIQEDLN 325 (406)
T ss_pred -Hh------------------------hCCCc--------------------------------c----chHHHHHHHHH
Confidence 00 00000 0 11345666666
Q ss_pred HHHHHHhhccccccCCCchhHHHHHhhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008737 459 EIYALQLYTPRLLSLQDCNFVRDTFQNITSNYCPPLEHYLKIVNAGLGMISFGVLLCLLLWIL 521 (555)
Q Consensus 459 ~~~~L~~~~P~l~~L~~C~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wi~ 521 (555)
+....++ .++.+.||.-+++.+.+...+.|.+...++-.+|. ..+..|.++.+++|+.
T Consensus 326 ~~e~~l~---~l~alldCr~lh~dY~~al~g~C~dg~eGl~~l~l--~sll~al~f~~~v~~~ 383 (406)
T PF04906_consen 326 STERSLH---QLTALLDCRGLHKDYVDALRGLCYDGLEGLLYLLL--FSLLAALLFSILVCVV 383 (406)
T ss_pred HHHHHHH---HHHhhcccccHHHHHHHHHHhhccchHhHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 6665555 78999999999999999999999999999977765 3344444455555553
No 3
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=99.84 E-value=1e-18 Score=185.29 Aligned_cols=358 Identities=17% Similarity=0.168 Sum_probs=204.4
Q ss_pred ccccccCcccCCcchhhhhhhhhhhhHHHHHHHHHHH--HHHH-HHHHHHhCCcccCCCCCCchhHHHHHHHHHHHHHHH
Q 008737 84 HFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFIS--FGLV-LVAHHCCGWRINIKGKESASSQRICLILLIVFTCAA 160 (555)
Q Consensus 84 ~f~~Y~GG~nI~nkhYwaSV~fTgipg~~iA~~Wfi~--fGl~-l~~~~cc~~~~~~k~~~s~~~~~i~lilLllfTi~a 160 (555)
.|+.-+.-|++.++.|.+|.++.| ++|++.+++ .+|+ -|+|.|||++...+++++ ..++..+.+++.|+++
T Consensus 24 ~~~~tns~F~pe~~~Y~QaL~lla----~l~aa~l~l~Ll~ll~yli~~cC~Rr~~~~~~~~--~~~c~s~~l~I~tl~c 97 (526)
T KOG4433|consen 24 KLHPTNSVFRPEDSEYQQALLLLA----ALAAACLGLSLLFLLFYLICRCCCRRETTGRKRR--RVRCLSWSLIIATLMC 97 (526)
T ss_pred eEeeccccCCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC--CcceeeehHHHHHHHH
Confidence 467788999999999999999998 566665553 1222 233555554432222221 1223444455666666
Q ss_pred HHHHhhhhcccccccccchhhhhHHhccchhHHHHHHHHHHHHhhhhhccccccc-cccchhhhHHHHH-------HHHH
Q 008737 161 AIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVF-LPSAVMDDIDKLN-------RDLS 232 (555)
Q Consensus 161 i~Gcivl~~Gn~kfh~~~~~t~~~vv~qa~~tv~tLrNVt~~L~~ak~~~V~~i~-lP~dv~~~Id~l~-------~~Ln 232 (555)
.+|.+++|+||+++|+++.+.. |-.+.+|.++.++++.+...+..-.....+.+ .|..+++...++. .++.
T Consensus 98 ca~igvg~ygN~e~~~G~~q~~-~Sl~~an~tv~ti~~qv~~~~~~l~~~~~~~l~~~~~n~t~~~~l~~~l~~vq~~~~ 176 (526)
T KOG4433|consen 98 CAAIGVGFYGNSETSDGLLQAT-YSLRHANHTVSTIDAQVSDTAEGLNNTAEQLLETLEENLTARPELLQALRRVQGNAE 176 (526)
T ss_pred HHHHheeeecCccccchHHHHH-HhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhHHHHHHHHHHHHHHHH
Confidence 7777899999999999887543 34556666777777666544433221112211 1222322222222 2333
Q ss_pred HHHHHhhHHhHHh-----hHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHHHHHHHHHH
Q 008737 233 TAANTLADKTSEN-----SAKIRKVFNA---VRS-ALITVAALMLLLSIIGLFLSIL-RHKHAIHIFILSGWLLVAITFI 302 (555)
Q Consensus 233 s~A~~L~~ki~~n-----~~~I~~~Ld~---V~~-~l~~vaavmL~La~lGlv~~~~-~~~~~~~~~~i~gwilv~~twi 302 (555)
.++.+++.--... +.++.+..+- .|. ++.++.++.++++++ +++|++ +.||+++.|.++|.+.++++|.
T Consensus 177 ~a~~~l~~~~~~~~~~~sl~~l~~~~~~yE~~RW~~~v~lL~l~LvvC~v-~vlglak~Skc~li~fsv~Gll~lvisWl 255 (526)
T KOG4433|consen 177 TAVGQLSGLPFWRMVAVSLEKLAEQVDFYESYRWLAYVLLLTLLLVVCLV-LVLGLAKRSKCLLIVFSVCGLLALVISWL 255 (526)
T ss_pred HHHHhhhcCcccccCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcchhhhHHHHHHHHHHHHHHH
Confidence 3333322211111 1133333333 232 223333444444444 345555 5799999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhHhhHhhhhCCCCCCccccc----ccCCcccchhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCC
Q 008737 303 LCGVFVILNNAISDTCMAMDEWVDHPHAETALSNI----LPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANANPSQ 378 (555)
Q Consensus 303 l~Gv~l~l~~~~~DtC~Am~e~~~~p~~~t~L~~i----LPCvd~~~a~~~L~~sk~~i~~lv~~vN~~i~~i~n~n~~~ 378 (555)
+.|++++.+++++|+|+.+++|+.+-..+---.++ +-|. ..-+|....+.++.-.-+.+.=| .+..
T Consensus 256 ~~gl~la~sVa~sDFC~~Pd~y~~~~~~~~l~t~~~~~yl~c~-~t~~NpF~qrL~~sq~al~~~~~-~va~-------- 325 (526)
T KOG4433|consen 256 SLGLELASSVALSDFCVDPDDYVLNMVEEYLSTDILLYYLACS-PTHSNPFQQRLTESQRALNNMQS-QVAG-------- 325 (526)
T ss_pred HHhhhHHHHhhhhhhccChHHHHHHhhhcccchhHHhhhcccC-CCCCCchhHHHHHHHHHHHHHHH-HHHH--------
Confidence 99999999999999999999999776543211122 1232 22333333333332221111111 1110
Q ss_pred CcccccccCCCCCCCCCCCCCCCcccccCCCCcccccchhcccccceeecCCCCCCCcccccCCCccchhHHHHHHHHHH
Q 008737 379 DYIYYYNQTGPVMPPLCYPYDSQLQDRQCGSYEVSIANASKVWQNYTCELSTSGSSAFGRCNSVGRVTPYFYKELVSAVT 458 (555)
Q Consensus 379 ~~~~y~nqsgp~~p~lCnPf~~~~~~~~C~~gev~i~na~~v~~~~~C~~~~~~~~~~~~C~t~gr~tp~~y~q~~a~~n 458 (555)
..+..=. ..+ -+.+....|....|
T Consensus 326 ------------------------------------------l~r~~v~------------~f~--~~q~~L~Av~~dLn 349 (526)
T KOG4433|consen 326 ------------------------------------------LLRMAVP------------LFP--AAQDPLLAVQEDLN 349 (526)
T ss_pred ------------------------------------------HHHhhhh------------ccc--cccCcHHHHHHHHH
Confidence 0111000 000 01112456777777
Q ss_pred HHHHHHhhccccccCCCchhHHHHHhhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008737 459 EIYALQLYTPRLLSLQDCNFVRDTFQNITSNYCPPLEHYLKIVNAGLGMISFGVLLCLLLWI 520 (555)
Q Consensus 459 ~~~~L~~~~P~l~~L~~C~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wi 520 (555)
.+..+++ .|..+.||--+.+-|.+-..+-|-+-..++-.+ .+..+-.|++|.+++|.
T Consensus 350 ~te~nl~---qLtAlvdCr~lH~dy~~AlrGlC~~gl~GL~~l--ml~s~L~a~~lsilv~~ 406 (526)
T KOG4433|consen 350 STERNLH---QLTALVDCRSLHKDYVAALRGLCYDGLEGLLYL--MLFSFLTALALSILVCS 406 (526)
T ss_pred HHHHHHH---HHHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHhc
Confidence 7777777 788899999999999999999998877765443 55555566666666633
No 4
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=99.31 E-value=4.7e-10 Score=130.40 Aligned_cols=147 Identities=14% Similarity=0.240 Sum_probs=108.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHH---HHHHhCCcccC---C----CCCCchh-HHHHHHHHHHHHHHHHHHHhhhh
Q 008737 100 WASVGFTGASAFILAVIWFISFGLVLV---AHHCCGWRINI---K----GKESASS-QRICLILLIVFTCAAAIGCILLS 168 (555)
Q Consensus 100 waSV~fTgipg~~iA~~Wfi~fGl~l~---~~~cc~~~~~~---k----~~~s~~~-~~i~lilLllfTi~ai~Gcivl~ 168 (555)
++-+.+-. ||++-++..+.|.+++- +|+|||+||.+ | .+++..| |.++.++|+++++++++|.+++|
T Consensus 84 ~~~l~~~~--g~~v~~~i~ll~~il~P~vg~~fCcCRCc~~CGg~~~~~~~~~~~c~R~~l~~~L~~~~~~il~g~i~aF 161 (806)
T PF05478_consen 84 LELLAYEW--GFLVCAVIGLLFIILMPLVGLCFCCCRCCGNCGGRMHQRDKKNDACRRGCLGILLLLLTLIILFGVICAF 161 (806)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444421 34544444443443332 26666655543 1 1122245 35777788899999999999999
Q ss_pred cccccccccchhhhhHHhccchhHHHHHHHHHHHHhhhhhccccccccc-cchhhhHHHHHHHHHHHHHHhhHHhHHhhH
Q 008737 169 VGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLP-SAVMDDIDKLNRDLSTAANTLADKTSENSA 247 (555)
Q Consensus 169 ~Gn~kfh~~~~~t~~~vv~qa~~tv~tLrNVt~~L~~ak~~~V~~i~lP-~dv~~~Id~l~~~Lns~A~~L~~ki~~n~~ 247 (555)
.+|++++++++++.+ .+.++++|+..+++++++ ++++++.. ++. ..+++..+|++++..++.++++.++
T Consensus 162 ~~n~~l~~~v~~~~~-------~~~~~~~Dl~~~l~~~~~-qi~~l~~~ny~~--~~~~v~~~L~~~~~~lg~~i~~~l~ 231 (806)
T PF05478_consen 162 VANQQLSTGVDDTPN-------TVNSTLDDLRTFLNDTPQ-QIDHLLVQNYSE--LKDHVSSDLDNIGSLLGGDIQDQLG 231 (806)
T ss_pred HHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHhhHH-HHHHHHHHHHHH--HHHHHHHHHHhccchhhHHHHHHHh
Confidence 999999999998877 788999999999999997 88887775 544 8889999999999999999999988
Q ss_pred -HHHHHHHHHHH
Q 008737 248 -KIRKVFNAVRS 258 (555)
Q Consensus 248 -~I~~~Ld~V~~ 258 (555)
++.++|+.+.-
T Consensus 232 ~~~~~~L~~i~~ 243 (806)
T PF05478_consen 232 SNVYPALDSILD 243 (806)
T ss_pred hhhHHHHHHHHH
Confidence 78888777654
No 5
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=98.52 E-value=2.8e-07 Score=104.54 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=96.8
Q ss_pred CcccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHH---HHHHHhCCcccCCCCC--Cc-----hh-HHHHHHHHHHHHH
Q 008737 90 GGWDITNKHYWASVGFTGASAFILAVIWFISFGLVL---VAHHCCGWRINIKGKE--SA-----SS-QRICLILLIVFTC 158 (555)
Q Consensus 90 GG~nI~nkhYwaSV~fTgipg~~iA~~Wfi~fGl~l---~~~~cc~~~~~~k~~~--s~-----~~-~~i~lilLllfTi 158 (555)
-|=+. +|.||.=|.|-+ |+++-.+-++.+-++. -+|+|||+||+++.++ +. .+ |.++-+.|++.++
T Consensus 88 ~~~~~-ek~~~~lv~~~~--g~lv~sV~~v~~iil~p~~~~~yccc~C~~rc~~r~~~~~~~~~a~kR~~~~l~Llvl~i 164 (865)
T KOG4331|consen 88 LGCRY-EKGDILLVIYEA--GMLVCSVILVLYIILKPSEGLCYCCCRCCRRCGGRIKSALKQDDACKRPCCELELLVLAI 164 (865)
T ss_pred cCCcc-cccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHhheeeeHhhhcCCCCchhccCcHhhhhHHHHHHHHHHH
Confidence 34344 466687777743 3333333222211111 1267777666553322 11 12 3477888899999
Q ss_pred HHHHHHhhhhcccccccccchhhhhHHhccchhHHHHHHHHHHHHhhhhhccccc-cccccchhhhHHHHHHHHHHHHHH
Q 008737 159 AAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQ-VFLPSAVMDDIDKLNRDLSTAANT 237 (555)
Q Consensus 159 ~ai~Gcivl~~Gn~kfh~~~~~t~~~vv~qa~~tv~tLrNVt~~L~~ak~~~V~~-i~lP~dv~~~Id~l~~~Lns~A~~ 237 (555)
..++|.+.+|..|+..|.+.+++.+ ++..+..+..++++.+|+ ++.. +...+.. .-+++..+||.++..
T Consensus 165 ~~ligv~~~fvtnk~v~~~i~~s~~-------~m~~~~~dl~t~lrdv~~-~l~~lli~dy~~--~e~qv~~qLn~i~~~ 234 (865)
T KOG4331|consen 165 ELLIGVFRAFVTNKPVMLRIKNSLE-------DMRRLATDLRTYLRDVPR-DLMVLLIADYTH--SECQVFYQLNEIGML 234 (865)
T ss_pred HHHHHHHHHHHHhhHHHHhhhccHH-------HHHHHHHHHHHHHhccHH-HHHHHHHHHhcc--chhHHHHHhhcccch
Confidence 9999999999999999999999988 888888899999998886 5652 2333333 456666777777666
Q ss_pred hhHHhHHhhH-HHHHHHH
Q 008737 238 LADKTSENSA-KIRKVFN 254 (555)
Q Consensus 238 L~~ki~~n~~-~I~~~Ld 254 (555)
++..+++.++ .+-++++
T Consensus 235 i~~~l~~~s~s~vi~~l~ 252 (865)
T KOG4331|consen 235 IGGCLHDDSESNVIPVLD 252 (865)
T ss_pred hcchhhhccccchHHHHH
Confidence 6666655554 4444444
No 6
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=97.53 E-value=0.0025 Score=69.43 Aligned_cols=121 Identities=18% Similarity=0.173 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHH--HHHhCCcccCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhhhHHhccc
Q 008737 112 ILAVIWFISFGLVLVA--HHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQS 189 (555)
Q Consensus 112 ~iA~~Wfi~fGl~l~~--~~cc~~~~~~k~~~s~~~~~i~lilLllfTi~ai~Gcivl~~Gn~kfh~~~~~t~~~vv~qa 189 (555)
++|.+=-.+.|+.|+. .+..|.||+||+.. ++.++-.--+--...|+.+++|.-+..| -+-++
T Consensus 45 lla~l~aa~l~l~Ll~ll~yli~~cC~Rr~~~-~~~~~~~~c~s~~l~I~tl~cca~igvg--~ygN~------------ 109 (526)
T KOG4433|consen 45 LLAALAAACLGLSLLFLLFYLICRCCCRRETT-GRKRRRVRCLSWSLIIATLMCCAAIGVG--FYGNS------------ 109 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc-CCCCCCcceeeehHHHHHHHHHHHHhee--eecCc------------
Confidence 4444444434444443 56667777766555 5677777777777777777777666543 22221
Q ss_pred hhHHHHHHHHHHHHhhhhhccccccccccchhhhHHHHHHHHHHHHHHhhHHhHHhhHHHHHHHHH
Q 008737 190 DYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNA 255 (555)
Q Consensus 190 ~~tv~tLrNVt~~L~~ak~~~V~~i~lP~dv~~~Id~l~~~Lns~A~~L~~ki~~n~~~I~~~Ld~ 255 (555)
++.+-+...+..+..++. .+. -.+.++.+.+++|++.+.+.-+|-++|..-..+.+.+
T Consensus 110 -e~~~G~~q~~~Sl~~an~-----tv~--ti~~qv~~~~~~l~~~~~~~l~~~~~n~t~~~~l~~~ 167 (526)
T KOG4433|consen 110 -ETSDGLLQATYSLRHANH-----TVS--TIDAQVSDTAEGLNNTAEQLLETLEENLTARPELLQA 167 (526)
T ss_pred -cccchHHHHHHhhhhhcc-----hhh--HHHHHHHHHHHHHHHHHHHHhhhHHhhhhhHHHHHHH
Confidence 233333333333333322 111 2233566666777777777777777776643343333
No 7
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=97.41 E-value=0.004 Score=67.92 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHH--HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhhhCC
Q 008737 261 ITVAALMLLLSIIGL--FLSILRHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMAMDEWVDHP 328 (555)
Q Consensus 261 ~~vaavmL~La~lGl--v~~~~~~~~~~~~~~i~gwilv~~twil~Gv~l~l~~~~~DtC~Am~e~~~~p 328 (555)
+-..+.|++|.+.-+ +++++|.-+--....++-.++..++.+++-+.+.+|.++ +++..||=-+|
T Consensus 207 ~Rw~~~l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~l~l~~~W~~~~~~l~~---~v~~sDfC~~p 273 (418)
T cd07912 207 YRWLAYLGLLSLLLVICLVLLVGLARHSRCLLIVFSVCGLFALIISWLSLGLYLAS---AVALSDFCVDP 273 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhcCH
Confidence 444455655555322 444455555555555554555566666666666666554 35455544444
No 8
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=97.38 E-value=0.0035 Score=68.23 Aligned_cols=175 Identities=15% Similarity=0.198 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhCCccc-CCCCCCchhHHHHHHHHHHHHHHHHHHHhhh----hcccccccccchhhh---hHHhccc
Q 008737 118 FISFGLVLVAHHCCGWRIN-IKGKESASSQRICLILLIVFTCAAAIGCILL----SVGQDEFHGEAMHTL---KYVVNQS 189 (555)
Q Consensus 118 fi~fGl~l~~~~cc~~~~~-~k~~~s~~~~~i~lilLllfTi~ai~Gcivl----~~Gn~kfh~~~~~t~---~~vv~qa 189 (555)
|+ |-++.++|+|||++.+ .+.+....|..+.+++..++++++++.+..+ -.|=.++..+..++- .-|-++.
T Consensus 34 Ll-~ll~yl~~~CC~r~~~~~~~~~~~~c~~~~~~ia~lvc~aaigvG~yGN~e~~~gv~~~~~s~~~~n~t~~~i~~~v 112 (406)
T PF04906_consen 34 LL-FLLIYLICRCCCRRPREEKSSRRCCCLTWSLVIATLVCCAAIGVGFYGNSETNDGVYQLIYSLRNANHTLSGIDNLV 112 (406)
T ss_pred HH-HHHHHHHHHhhCCCCCccccccCCcchHHHHHHHHHHHHHHHHcccccchhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 4445556777776643 4665567788777888888888988877765 344344444443333 2333455
Q ss_pred hhHHHHHH-HHHH---HHhhhhhccccccccccchhhhHHHHHHHHHHHHH------HhhHHhHHhhHHHHHHHHHHHHH
Q 008737 190 DYTVKTLR-NVTE---YLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAAN------TLADKTSENSAKIRKVFNAVRSA 259 (555)
Q Consensus 190 ~~tv~tLr-NVt~---~L~~ak~~~V~~i~lP~dv~~~Id~l~~~Lns~A~------~L~~ki~~n~~~I~~~Ld~V~~~ 259 (555)
+++.+.+. .+.. .|++.-..+.+..-.-...|+..+.+..++++... ++ +.+.++.+.++...-...+.
T Consensus 113 ~~~~~~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~l-~~~~~~~~~~E~yRw~~~~~ 191 (406)
T PF04906_consen 113 SDTTEALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQAENVVQQLDELPFWRNVSLSL-EQLAEQVSFYEYYRWLAYLG 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCcccccCCCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 55554443 2222 23322111111111111334455555544443321 22 34445556666666667777
Q ss_pred HHHHHHHHHHHHHHHHH---------HHhhchhhHHHHHHHHHHHHHHH
Q 008737 260 LITVAALMLLLSIIGLF---------LSILRHKHAIHIFILSGWLLVAI 299 (555)
Q Consensus 260 l~~vaavmL~La~lGlv---------~~~~~~~~~~~~~~i~gwilv~~ 299 (555)
+.++..+..++.++|+. ++++|+ +.+++.|++..+
T Consensus 192 lL~l~l~icl~~l~glar~Sk~~li~~~v~gl-----l~lvisW~~~g~ 235 (406)
T PF04906_consen 192 LLILDLVICLLGLLGLARQSKCLLIVFSVLGL-----LALVISWISLGL 235 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEeeeccH-----HHHHHHHHHHHH
Confidence 77777777777777763 334442 334466887655
No 9
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=92.82 E-value=1.8 Score=51.29 Aligned_cols=52 Identities=10% Similarity=0.216 Sum_probs=45.1
Q ss_pred cccCCCchhHHHHHhhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008737 470 LLSLQDCNFVRDTFQNITSNYCPPLEHYLKIVNAGLGMISFGVLLCLLLWIL 521 (555)
Q Consensus 470 l~~L~~C~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wi~ 521 (555)
-++...|.=+.+++...+.--|.-+...++-.|.|+..-++-++.++|+-+-
T Consensus 739 ~~~vg~C~Pl~~~~d~~~~~~C~~ivdp~N~fWf~l~~c~~~liP~ii~avk 790 (806)
T PF05478_consen 739 TNDVGRCQPLANIYDSAVVILCSRIVDPINGFWFGLGWCTLFLIPSIIFAVK 790 (806)
T ss_pred HccCcCCccHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999999999999999988888887777444
No 10
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=77.13 E-value=20 Score=30.41 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=5.7
Q ss_pred HHHHHHHHHhh
Q 008737 229 RDLSTAANTLA 239 (555)
Q Consensus 229 ~~Lns~A~~L~ 239 (555)
++|...|....
T Consensus 41 ~~L~~~a~~F~ 51 (89)
T PF00957_consen 41 EELSDNAKQFK 51 (89)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhHHHH
Confidence 45555555544
No 11
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=73.50 E-value=63 Score=32.90 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=9.7
Q ss_pred ccchhHHHHHHHHHHHHhh
Q 008737 187 NQSDYTVKTLRNVTEYLSL 205 (555)
Q Consensus 187 ~qa~~tv~tLrNVt~~L~~ 205 (555)
++-|.-....++++..|+.
T Consensus 64 ~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 64 EKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555554
No 12
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=68.93 E-value=1.6 Score=40.28 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHhcCCCcccccccCCCCcc
Q 008737 498 LKIVNAGLGMISFGVLLCLLL---WILYANRPQREEVFVNLPLPIK 540 (555)
Q Consensus 498 ~~~v~~gl~~lS~~~~l~~i~---Wi~~ar~~~~~~~~~~~~~~~~ 540 (555)
++++ |++++|.|.||++.- |+..-|+++++|..+...+..+
T Consensus 80 ~~~~--G~vlLs~GLmlL~~~alcW~~~~rkK~~kr~eSq~~~~~~ 123 (129)
T PF15099_consen 80 ISIF--GPVLLSLGLMLLACSALCWKPIIRKKKKKRRESQTALVLN 123 (129)
T ss_pred hhhe--hHHHHHHHHHHHHhhhheehhhhHhHHHHhhhhhHHHHhh
Confidence 4455 999999999987654 9987776666666555544444
No 13
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=64.09 E-value=81 Score=26.79 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q 008737 151 ILLIVFTCAAAIGCILL 167 (555)
Q Consensus 151 ilLllfTi~ai~Gcivl 167 (555)
+..+.|.++++..+.++
T Consensus 5 I~Aiaf~vLvi~l~~~l 21 (90)
T PF06103_consen 5 IAAIAFAVLVIFLIKVL 21 (90)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444333333
No 14
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=63.38 E-value=47 Score=31.95 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=16.9
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008737 274 GLFLSILRHKHAIHIFILSGWLLVAITFILCGVFVIL 310 (555)
Q Consensus 274 Glv~~~~~~~~~~~~~~i~gwilv~~twil~Gv~l~l 310 (555)
++++...++-.++..+..++++.+.+..+..|++++.
T Consensus 25 ~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~ 61 (191)
T PF04156_consen 25 ALVLFISGLGALISFILGIALLALGVVLLSLGLLCLL 61 (191)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333344444444444455444444445554443
No 15
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism]
Probab=62.72 E-value=11 Score=42.20 Aligned_cols=58 Identities=17% Similarity=0.399 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008737 248 KIRKVFNAVRSALITVAALMLLLSIIG-LFLSILRHKHAIHIFILSGWLLVAITFILCGVFVIL 310 (555)
Q Consensus 248 ~I~~~Ld~V~~~l~~vaavmL~La~lG-lv~~~~~~~~~~~~~~i~gwilv~~twil~Gv~l~l 310 (555)
|+++++.... ..++.+.++|+- .-+-.+|.+....=..+-||+.+.+.|++++.|.+.
T Consensus 549 kl~Ra~~i~~-----~~~li~t~~~viiwP~pmygskyIFSk~fF~gWviV~iiW~~~~a~~i~ 607 (667)
T KOG2348|consen 549 KLNRALRIGI-----FVSLIITFAFVIIWPLPMYGSKYIFSKLFFTGWVIVIIIWTFIAAFAIT 607 (667)
T ss_pred HHhhhhhHHH-----HHHHHHHHHHHhhccccccCccceeechhhhHHHHHHHHHHHHHHHheE
Confidence 6666655432 234444333321 122234555555566778999999999999987654
No 16
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=61.39 E-value=63 Score=30.42 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhHHhHHhhH
Q 008737 229 RDLSTAANTLADKTSENSA 247 (555)
Q Consensus 229 ~~Lns~A~~L~~ki~~n~~ 247 (555)
.++|++++.+++++.++..
T Consensus 90 ~~ln~s~r~~~~~~t~~~~ 108 (139)
T COG4768 90 SDLNQSVRHLATRATNAVE 108 (139)
T ss_pred HHHHHHHHHHHHHHhhHhh
Confidence 5777777777666655444
No 17
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=61.35 E-value=59 Score=30.24 Aligned_cols=47 Identities=21% Similarity=0.143 Sum_probs=29.9
Q ss_pred HHHhhhhcccccccccchhhhhHHhccchhHHHHHHHHHHHHhhhhh
Q 008737 162 IGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKT 208 (555)
Q Consensus 162 ~Gcivl~~Gn~kfh~~~~~t~~~vv~qa~~tv~tLrNVt~~L~~ak~ 208 (555)
+|++.+-+--=+|..=.--|.+-.-++.+.....|.+|++.|+++|.
T Consensus 18 vGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKk 64 (126)
T PF07889_consen 18 VGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKK 64 (126)
T ss_pred HHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433334444433445555566667788889999999998886
No 18
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=61.09 E-value=90 Score=37.33 Aligned_cols=54 Identities=9% Similarity=0.133 Sum_probs=46.7
Q ss_pred cccccCCCchhHHHHHhhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008737 468 PRLLSLQDCNFVRDTFQNITSNYCPPLEHYLKIVNAGLGMISFGVLLCLLLWIL 521 (555)
Q Consensus 468 P~l~~L~~C~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wi~ 521 (555)
|..|++.+|.=+.....+-+.--|.=..+-+..-|.+++...+-+..++|+-.-
T Consensus 758 e~~e~V~sCqPls~~l~~~~~~lC~~~iDPlN~fW~~il~c~~lliP~li~a~~ 811 (865)
T KOG4331|consen 758 EHLENVASCQPLSKILRENVVVLCGYIIDPLNLFWFCILFCTVLLIPSLIFAVK 811 (865)
T ss_pred HHHhhccccccHHHHHHhhhHhhhhhccCCccccchHHHHHHHHHHhHHHHHHH
Confidence 777999999988888888888889888888889999999999988888888654
No 19
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=58.67 E-value=5.5 Score=37.72 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=23.3
Q ss_pred hhhhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhCCc
Q 008737 98 HYWASVGF-TGASAFILAVIWFISFGLVLVAHHCCGWR 134 (555)
Q Consensus 98 hYwaSV~f-Tgipg~~iA~~Wfi~fGl~l~~~~cc~~~ 134 (555)
.|.+++.. |+|.|.+.+++.++ |++..++.|+|.|
T Consensus 52 ~yi~~~lsgtAIaGIVfgiVfim--gvva~i~icvCmc 87 (155)
T PF10873_consen 52 AYIGDVLSGTAIAGIVFGIVFIM--GVVAGIAICVCMC 87 (155)
T ss_pred hhhccccccceeeeeehhhHHHH--HHHHHHHHHHhhh
Confidence 46777666 88888877777665 5665555565544
No 20
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=54.73 E-value=7.4 Score=35.68 Aligned_cols=11 Identities=9% Similarity=0.087 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 008737 500 IVNAGLGMISF 510 (555)
Q Consensus 500 ~v~~gl~~lS~ 510 (555)
|+-++++++.+
T Consensus 2 W~l~~iii~~i 12 (130)
T PF12273_consen 2 WVLFAIIIVAI 12 (130)
T ss_pred eeeHHHHHHHH
Confidence 34333333333
No 21
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=53.23 E-value=1.8e+02 Score=30.14 Aligned_cols=16 Identities=25% Similarity=0.492 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 008737 259 ALITVAALMLLLSIIG 274 (555)
Q Consensus 259 ~l~~vaavmL~La~lG 274 (555)
.|-+++++++.+.+++
T Consensus 260 ~LTvvt~IflP~t~Ia 275 (318)
T TIGR00383 260 ILTVVSTIFIPLTFIA 275 (318)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566666666543
No 22
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=52.13 E-value=1.5e+02 Score=25.40 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHh
Q 008737 191 YTVKTLRNVTEYLS 204 (555)
Q Consensus 191 ~tv~tLrNVt~~L~ 204 (555)
++++.|++....++
T Consensus 5 ~vT~~L~rt~~~m~ 18 (92)
T PF03908_consen 5 DVTESLRRTRQMMA 18 (92)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444555444443
No 23
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=52.02 E-value=2.2e+02 Score=27.22 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhh
Q 008737 194 KTLRNVTEYLSL 205 (555)
Q Consensus 194 ~tLrNVt~~L~~ 205 (555)
++.|+..++|.+
T Consensus 17 e~~~s~~q~L~~ 28 (169)
T COG5130 17 EIYRSIKQALGD 28 (169)
T ss_pred HHHHHHHHHhcC
Confidence 456666666665
No 24
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.77 E-value=1.4e+02 Score=27.32 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhHHhHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhch-hhHHHHHHHHHHHH
Q 008737 229 RDLSTAANTLADKTSENSA-KIRKVFNAVRSALITVAALMLLLSIIGLFLS-ILRH-KHAIHIFILSGWLL 296 (555)
Q Consensus 229 ~~Lns~A~~L~~ki~~n~~-~I~~~Ld~V~~~l~~vaavmL~La~lGlv~~-~~~~-~~~~~~~~i~gwil 296 (555)
.+|..-+....+..+++.. +++...+.+++..=.|+++|+.+. +|.++- ++|- +..+++|.++|.++
T Consensus 18 ~dlaar~kd~~~~~~~~~a~s~k~~~~a~klssefIsGilVGa~-iG~llD~~agTsPwglIv~lllGf~A 87 (116)
T COG5336 18 ADLAARIKDAAEGAEKSSAESIKGYAQAFKLSSEFISGILVGAG-IGWLLDKFAGTSPWGLIVFLLLGFGA 87 (116)
T ss_pred HHHHHHhhhhccccccccchhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3444433333444334444 778888888888878888877654 365554 3453 33466666665443
No 25
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=47.48 E-value=9.7 Score=36.71 Aligned_cols=8 Identities=25% Similarity=0.638 Sum_probs=3.0
Q ss_pred HHHhCCcc
Q 008737 128 HHCCGWRI 135 (555)
Q Consensus 128 ~~cc~~~~ 135 (555)
++|||+||
T Consensus 97 ~~~Cc~c~ 104 (179)
T PF13908_consen 97 CFCCCCCC 104 (179)
T ss_pred hheecccc
Confidence 33333333
No 26
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=46.11 E-value=10 Score=34.69 Aligned_cols=34 Identities=9% Similarity=0.279 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 008737 497 YLKIVNAGLGMISFGVLLCLLLWILYANRPQREE 530 (555)
Q Consensus 497 ~~~~v~~gl~~lS~~~~l~~i~Wi~~ar~~~~~~ 530 (555)
+++..|-+=-+++.-++|++||+++|+||+.+..
T Consensus 55 g~ysawgagsfiatliillviffviy~re~~~~~ 88 (150)
T PF06084_consen 55 GIYSAWGAGSFIATLIILLVIFFVIYSREEEKNN 88 (150)
T ss_pred hhhhhcccchHHHHHHHHHHHhheeEeccccccC
Confidence 3444565666677778888999999999866543
No 27
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=45.52 E-value=1e+02 Score=25.37 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhhcccccccccchhhhhHHhccchhHHHHHHHHH
Q 008737 154 IVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVT 200 (555)
Q Consensus 154 llfTi~ai~Gcivl~~Gn~kfh~~~~~t~~~vv~qa~~tv~tLrNVt 200 (555)
+-|.+-+++|.++.+.-..+--. ++.+.+.++++++.+++++..
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~sG~---e~R~~l~~~~~~~~~~~~~~~ 46 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPKSGK---ETREKLKDKAEDLKDKAKDLY 46 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcH---HHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666555444444333 455545555555555444443
No 28
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=43.09 E-value=15 Score=28.79 Aligned_cols=28 Identities=21% Similarity=0.623 Sum_probs=20.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 008737 100 WASVGFTGASAFILAVIWFISFGLVLVAHHCC 131 (555)
Q Consensus 100 waSV~fTgipg~~iA~~Wfi~fGl~l~~~~cc 131 (555)
|+++=.. |.++|++.|+ .||+++++.-|
T Consensus 11 y~tLrig---GLi~A~vlfi-~Gi~iils~kc 38 (50)
T PF02038_consen 11 YETLRIG---GLIFAGVLFI-LGILIILSGKC 38 (50)
T ss_dssp HHHHHHH---HHHHHHHHHH-HHHHHHCTTHH
T ss_pred hhHhhcc---chHHHHHHHH-HHHHHHHcCcc
Confidence 5666544 5899999998 69988875433
No 29
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=41.29 E-value=3e+02 Score=30.37 Aligned_cols=37 Identities=14% Similarity=0.286 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHH-Hhhhhcccccccccchhhhh
Q 008737 145 SQRICLILLIVFTCAAAIG-CILLSVGQDEFHGEAMHTLK 183 (555)
Q Consensus 145 ~~~i~lilLllfTi~ai~G-civl~~Gn~kfh~~~~~t~~ 183 (555)
+.++.+++..++-.++|+| +..+.|||. |.+++.-++
T Consensus 24 YlryfFlF~SLIQ~LIIlgLVLFmVYGn~--h~~te~~lq 61 (442)
T PF06637_consen 24 YLRYFFLFVSLIQFLIILGLVLFMVYGNV--HVSTESRLQ 61 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCc--chhhHHHHH
Confidence 3344444444444455677 445678888 666654444
No 30
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=40.11 E-value=2.2e+02 Score=30.08 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 008737 259 ALITVAALMLLLSIIGLFLSILR 281 (555)
Q Consensus 259 ~l~~vaavmL~La~lGlv~~~~~ 281 (555)
.+-+++++++...+ +.|++|
T Consensus 264 ~LTi~s~iflPpTl---IagiyG 283 (322)
T COG0598 264 ILTIVSTIFLPPTL---ITGFYG 283 (322)
T ss_pred HHHHHHHHHHhhHH---HHcccc
Confidence 33444555555554 455544
No 31
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=39.10 E-value=27 Score=31.32 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008737 292 SGWLLVAITFILCGVFVI 309 (555)
Q Consensus 292 ~gwilv~~twil~Gv~l~ 309 (555)
+-|+|++++|+-|++|++
T Consensus 85 LPW~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 85 LPWGLLVLSWIGFIAYIF 102 (103)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 469999999999999986
No 32
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=38.13 E-value=53 Score=32.66 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccccch
Q 008737 148 ICLILLIVFTCAAAIGCILLSVGQDEFHGEAM 179 (555)
Q Consensus 148 i~lilLllfTi~ai~Gcivl~~Gn~kfh~~~~ 179 (555)
...++++++.++-+++++..+.-.+++.++++
T Consensus 84 ~y~~~l~l~~i~e~~~~i~~~~~~~~l~~~~~ 115 (237)
T KOG3882|consen 84 SYFILLLLLFIAELAAGILAFVFRDSLRDELE 115 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeHHHHHHHHH
Confidence 33444444445556666777755666655554
No 33
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=38.08 E-value=21 Score=30.77 Aligned_cols=19 Identities=5% Similarity=0.513 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008737 503 AGLGMISFGVLLCLLLWIL 521 (555)
Q Consensus 503 ~gl~~lS~~~~l~~i~Wi~ 521 (555)
++++.+.++.++.++.|.+
T Consensus 7 ~~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 7 LAIIALIVALIIAIVVWTI 25 (81)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788888888888899988
No 34
>PRK09546 zntB zinc transporter; Reviewed
Probab=37.49 E-value=3.6e+02 Score=28.27 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 008737 259 ALITVAALMLLLSIIGLFLSILR 281 (555)
Q Consensus 259 ~l~~vaavmL~La~lGlv~~~~~ 281 (555)
.+-+++++++.+.| +.|++|
T Consensus 266 ~Ltilt~IflPlT~---IaGiyG 285 (324)
T PRK09546 266 TMSLMAMVFLPTTF---LTGLFG 285 (324)
T ss_pred HHHHHHHHHHHHHH---HHhhhc
Confidence 34444555554444 555555
No 35
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=36.43 E-value=25 Score=36.53 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=33.3
Q ss_pred ccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 008737 487 TSNYCPPLEHYLKIVNAGLGMISFGVLLCLLLWILYANRPQREE 530 (555)
Q Consensus 487 ~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wi~~ar~~~~~~ 530 (555)
++|-|=.-+.....+...++.+.++.+++++-|.+|.++++|+|
T Consensus 217 ~gNlCw~~~~~s~l~~~~~i~L~~~~i~l~~gw~~y~~~~krre 260 (262)
T PF11884_consen 217 YGNLCWSEEDHSHLLRISMIALVLANILLVLGWSLYRWNQKRRE 260 (262)
T ss_pred ecceeeccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36888888888887777777777777777778999977655554
No 36
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=35.46 E-value=6.6e+02 Score=27.92 Aligned_cols=78 Identities=19% Similarity=0.462 Sum_probs=40.8
Q ss_pred HHHHhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhchhhH--HHHHHHHHHHHHHHHHHHHH
Q 008737 234 AANTLADKTSENSAKIRKVFNAVRSALITVAALML------LLSIIGLFLSILRHKHA--IHIFILSGWLLVAITFILCG 305 (555)
Q Consensus 234 ~A~~L~~ki~~n~~~I~~~Ld~V~~~l~~vaavmL------~La~lGlv~~~~~~~~~--~~~~~i~gwilv~~twil~G 305 (555)
++-.+..|-.+..+++++.+|.++...+-+....+ ++++..=+++--++... +-.|++..++..+++|++.|
T Consensus 200 Aalk~~k~~~~~ge~~~~~I~t~~~ivM~lV~~VirLTPYgV~AlMtkv~ats~~~~I~~Lg~FivAsY~Ai~~MFvvH~ 279 (458)
T COG1823 200 AALKLSKKDPEKGERFKAAIDTLQSIVMKLVRLVIRLTPYGVLALMTKVVATSNLEDIIKLGSFIVASYIAIFIMFVVHG 279 (458)
T ss_pred HHHHhhhhchHhHhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHhhccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444555555555777777776644333222222 12221112222234433 33466667888888888888
Q ss_pred HHHHHH
Q 008737 306 VFVILN 311 (555)
Q Consensus 306 v~l~l~ 311 (555)
+.++++
T Consensus 280 iLL~~~ 285 (458)
T COG1823 280 ILLALN 285 (458)
T ss_pred HHHHHc
Confidence 777765
No 37
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=34.49 E-value=59 Score=24.81 Aligned_cols=17 Identities=12% Similarity=0.462 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008737 505 LGMISFGVLLCLLLWIL 521 (555)
Q Consensus 505 l~~lS~~~~l~~i~Wi~ 521 (555)
..++..+++++++.|..
T Consensus 14 ~~v~~~~~F~gi~~w~~ 30 (49)
T PF05545_consen 14 GTVLFFVFFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445556667777777
No 38
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=34.42 E-value=1.1e+02 Score=30.26 Aligned_cols=36 Identities=14% Similarity=0.307 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 008737 257 RSALITVAALMLLLSIIGLFLSILRHKHAIHIFILS 292 (555)
Q Consensus 257 ~~~l~~vaavmL~La~lGlv~~~~~~~~~~~~~~i~ 292 (555)
-..++++.++|++++++|..-++...|+++..+.++
T Consensus 53 ~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~~ 88 (237)
T KOG3882|consen 53 AYILIAVGGVVFLVGFLGCCGALRESRCLLLSYFIL 88 (237)
T ss_pred hhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHHH
Confidence 344577778899999999888777788865555443
No 39
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=32.23 E-value=3.1e+02 Score=23.10 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=9.7
Q ss_pred HHHHHHHHhhHHh---HHhhHHHHH
Q 008737 230 DLSTAANTLADKT---SENSAKIRK 251 (555)
Q Consensus 230 ~Lns~A~~L~~ki---~~n~~~I~~ 251 (555)
+|...++++...+ +++++++++
T Consensus 35 ~L~~kt~~L~~~a~~F~k~a~~l~r 59 (89)
T PF00957_consen 35 ELEDKTEELSDNAKQFKKNAKKLKR 59 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4444455554333 334444444
No 40
>PF06687 SUR7: SUR7/PalI family; InterPro: IPR009571 This family consists of several fungal-specific SUR7 proteins. Its activity regulates expression of RVS161, a homologue of human endophilin, suggesting a function for both in endocytosis [, ]. The protein carries four transmembrane domains and is thus likely to act as an anchoring protein for the eisosome to the plasma membrane. Eisosomes are the immobile protein complexes, that include the proteins Pil1 and Lsp1, which co-localise with sites of protein and lipid endocytosis at the plasma membrane. SUR7 protein may play a role in sporulation []. Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This family also includes PalI which is part of a pH signal transduction cascade. Based on the similarity of PalI to the yeast Rim9 meiotic signal transduction component it has been suggested that PalI might be a membrane sensor for ambient pH [].
Probab=31.97 E-value=4.7e+02 Score=25.16 Aligned_cols=24 Identities=8% Similarity=-0.020 Sum_probs=13.8
Q ss_pred HHHhhHHhHHhhHHHHHHHHHHHH
Q 008737 235 ANTLADKTSENSAKIRKVFNAVRS 258 (555)
Q Consensus 235 A~~L~~ki~~n~~~I~~~Ld~V~~ 258 (555)
...+.+.++++.+.+++.+..+..
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~ 119 (212)
T PF06687_consen 96 DLGLPSSLRSALDYYNNLLKAMFI 119 (212)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666655544
No 41
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=31.16 E-value=47 Score=28.60 Aligned_cols=15 Identities=33% Similarity=0.735 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 008737 508 ISFGVLLCLLLWILY 522 (555)
Q Consensus 508 lS~~~~l~~i~Wi~~ 522 (555)
++.+++++.++||++
T Consensus 75 ~~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 75 FAFLFFLLVVLYILW 89 (92)
T ss_pred HHHHHHHHHHHHHhh
Confidence 334445555566664
No 42
>PRK01919 tatB sec-independent translocase; Provisional
Probab=31.15 E-value=1.8e+02 Score=28.49 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHhhHHHHHHHHH
Q 008737 223 DIDKLNRDLSTAANTLADKTSENSAKIRKVFNA 255 (555)
Q Consensus 223 ~Id~l~~~Lns~A~~L~~ki~~n~~~I~~~Ld~ 255 (555)
.+++...++.+.+..+...++++.+.+.+-++.
T Consensus 58 Elrk~~~~~e~~~~~v~~si~~~~~~~~~~~~~ 90 (169)
T PRK01919 58 ELRKMKTDFESAARDVENTIHDNLSEHESDLND 90 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 455566677777777777777777766665554
No 43
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=30.44 E-value=4e+02 Score=23.80 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHhhH--HhH-HhhHHHHHHHHHHHHHHHHHHHHH
Q 008737 222 DDIDKLNRDLSTAANTLAD--KTS-ENSAKIRKVFNAVRSALITVAALM 267 (555)
Q Consensus 222 ~~Id~l~~~Lns~A~~L~~--ki~-~n~~~I~~~Ld~V~~~l~~vaavm 267 (555)
.+.++++.+||-.-+++.+ +.+ +|.++-+|=+..+...+..+.|..
T Consensus 35 ~~qe~v~~kld~tlD~i~reRe~dee~k~~n~Knir~~KmwilGlvgTi 83 (98)
T PF11166_consen 35 HDQELVNQKLDRTLDEINREREEDEENKKKNDKNIRDIKMWILGLVGTI 83 (98)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445566666666666544 121 222244444444555444434333
No 44
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=29.61 E-value=6.3e+02 Score=25.92 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008737 248 KIRKVFNAVRSALITVAALMLLLSII 273 (555)
Q Consensus 248 ~I~~~Ld~V~~~l~~vaavmL~La~l 273 (555)
+.++....+......+++|..+++++
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lv 167 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALV 167 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444444334444444444443
No 45
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=28.91 E-value=8.9e+02 Score=27.40 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=14.5
Q ss_pred hhhhhhhhHHHHHHHHHH
Q 008737 102 SVGFTGASAFILAVIWFI 119 (555)
Q Consensus 102 SV~fTgipg~~iA~~Wfi 119 (555)
|.+|+.+|-++.|...++
T Consensus 119 Sf~~s~lp~~~qa~il~l 136 (546)
T COG4615 119 SFAFSRLPELVQAIILTL 136 (546)
T ss_pred eehHhhhHHHHHHHHHHH
Confidence 578899998888877655
No 46
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=28.88 E-value=3.3e+02 Score=24.69 Aligned_cols=65 Identities=14% Similarity=0.276 Sum_probs=33.3
Q ss_pred hhhhhhhhhhhHHHHHH--------HHHHHHHHHHH---H-HHHhCCcccCCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 008737 99 YWASVGFTGASAFILAV--------IWFISFGLVLV---A-HHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCIL 166 (555)
Q Consensus 99 YwaSV~fTgipg~~iA~--------~Wfi~fGl~l~---~-~~cc~~~~~~k~~~s~~~~~i~lilLllfTi~ai~Gciv 166 (555)
|.-|+++|.+|.+++.. .+++ +++++. + ..+|= .-+ .++..+-...++++-++..++.++|++-
T Consensus 22 FiLSliLT~i~F~lv~~~~~~~~~~~~~i-~~lA~vQi~VqL~~FL-Hl~--~~~~~~wn~~al~Ft~~i~~iiv~GSlW 97 (109)
T PRK10582 22 FILSIILTVIPFWMVMTGAASPAVILGTI-LAMAVVQILVHLVCFL-HMN--TKSDEGWNMTAFVFTVLIIAILVVGSIW 97 (109)
T ss_pred HHHHHHHHHHHHHHHHHccCChhHHHHHH-HHHHHHHHHHHHHHHh-ccc--CCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999888753 3333 222211 1 22321 111 1222234455666655555566778754
Q ss_pred h
Q 008737 167 L 167 (555)
Q Consensus 167 l 167 (555)
.
T Consensus 98 I 98 (109)
T PRK10582 98 I 98 (109)
T ss_pred H
Confidence 4
No 47
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=28.79 E-value=3.4e+02 Score=24.01 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=35.1
Q ss_pred hhhhhhhhhhhHHHHHH--------HHHHHHHHHHH---H-HHHhCCcccCCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 008737 99 YWASVGFTGASAFILAV--------IWFISFGLVLV---A-HHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCIL 166 (555)
Q Consensus 99 YwaSV~fTgipg~~iA~--------~Wfi~fGl~l~---~-~~cc~~~~~~k~~~s~~~~~i~lilLllfTi~ai~Gciv 166 (555)
|.-|+.+|.+|.+++.. .+++ +++++. + ..++= . -+.++.++-...++++-++..++.++|++-
T Consensus 11 FiLsliLT~i~F~~v~~~~~~~~~~~~~i-~~~A~iQi~vqL~~Fl-H--l~~~~~~~~n~~~l~Ft~~i~~iiv~GSiW 86 (96)
T TIGR02847 11 FVLSVILTAIPFGLVMSGTLSKGLTLVII-IVLAVVQILVHLVFFL-H--LNTSSEQRWNLISLLFTILIIFILIGGSIW 86 (96)
T ss_pred HHHHHHHHHHHHHHHHHccCCHhHHHHHH-HHHHHHHHHHHHHHHh-h--ccCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999887763 3333 222211 1 22221 1 112223344556666666666667788865
Q ss_pred hh
Q 008737 167 LS 168 (555)
Q Consensus 167 l~ 168 (555)
..
T Consensus 87 Im 88 (96)
T TIGR02847 87 IM 88 (96)
T ss_pred HH
Confidence 43
No 48
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=28.38 E-value=4.3e+02 Score=29.21 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=9.2
Q ss_pred ccchhHHH----HHHHHHHHHhhh
Q 008737 187 NQSDYTVK----TLRNVTEYLSLA 206 (555)
Q Consensus 187 ~qa~~tv~----tLrNVt~~L~~a 206 (555)
.|.|+.++ -+.|+...|...
T Consensus 265 eqlNd~~elHq~Ei~~LKqeLa~~ 288 (395)
T PF10267_consen 265 EQLNDLTELHQNEIYNLKQELASM 288 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44444443 344555555443
No 49
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=27.76 E-value=33 Score=33.06 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCcc
Q 008737 108 ASAFILAVIWFISFGLVLVAHHCCGWRI 135 (555)
Q Consensus 108 ipg~~iA~~Wfi~fGl~l~~~~cc~~~~ 135 (555)
+.+++|.++-+|..+|+.++|+|||..+
T Consensus 80 iivgvi~~Vi~Iv~~Iv~~~Cc~c~~~K 107 (179)
T PF13908_consen 80 IIVGVICGVIAIVVLIVCFCCCCCCLYK 107 (179)
T ss_pred eeeehhhHHHHHHHhHhhheeccccccc
Confidence 3333433333343567777876666555
No 50
>PRK10404 hypothetical protein; Provisional
Probab=27.61 E-value=3.6e+02 Score=23.98 Aligned_cols=8 Identities=50% Similarity=1.041 Sum_probs=4.2
Q ss_pred HHHHHHhh
Q 008737 273 IGLFLSIL 280 (555)
Q Consensus 273 lGlv~~~~ 280 (555)
+||++|++
T Consensus 90 vGlllG~L 97 (101)
T PRK10404 90 VGLVLGLL 97 (101)
T ss_pred HHHHHHHH
Confidence 35555554
No 51
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=27.36 E-value=2.5e+02 Score=25.09 Aligned_cols=17 Identities=6% Similarity=-0.013 Sum_probs=9.4
Q ss_pred hhhhcccccccccchhh
Q 008737 165 ILLSVGQDEFHGEAMHT 181 (555)
Q Consensus 165 ivl~~Gn~kfh~~~~~t 181 (555)
++.+.+-.+.+..+.+.
T Consensus 24 ~~~~~~l~~~~~~~~~i 40 (181)
T PF12729_consen 24 IVGLYSLSQINQNVEEI 40 (181)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666555443
No 52
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=27.19 E-value=4e+02 Score=22.79 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhhHHhHH
Q 008737 224 IDKLNRDLSTAANTLADKTSE 244 (555)
Q Consensus 224 Id~l~~~Lns~A~~L~~ki~~ 244 (555)
.+++...+...++...++..+
T Consensus 40 ~~~a~~~~~~~~~~~~~~~~~ 60 (94)
T PF05957_consen 40 LDDARDRAEDAADQAREQARE 60 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333
No 53
>PTZ00358 hypothetical protein; Provisional
Probab=26.82 E-value=1.1e+02 Score=33.18 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhhhcccc
Q 008737 153 LIVFTCAAAIGCILLSVGQD 172 (555)
Q Consensus 153 LllfTi~ai~Gcivl~~Gn~ 172 (555)
|.+...++..+...-|.+.+
T Consensus 153 LviL~vlavt~sl~~~~~~~ 172 (367)
T PTZ00358 153 LVILIVLAVTASLIAFVGRS 172 (367)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 33444455667777777776
No 54
>PF03172 Sp100: Sp100 domain; InterPro: IPR004865 The Sp100 and promyelocytic leukemia proteins (PML) are constituents of nuclear domains, known as nuclear dots (NDs or NBs - nuclear bodies or PML bodies), and are both covalently modified by the small ubiquitin-related protein SUMO-1. NBs play a role in autoimmunity, virus infections, and in the etiology of acute promyelocytic leukemia []. A functional nuclear localization signal and an NB-targeting region that coincides with an Sp100 homodimerization domain have been mapped. Sequences similar to the Sp100 homodimerization/ND-targeting region occur in several other proteins, which include the autoimmune regulator proteins (AIRE) and other numerous other transiently or permanently localised proteins. PML is expressed as a family of isoforms (PML I-VII) as a result of alternative splicing, most of which are found in the nucleus. Although there are many other functions of PML NBs in a wide range of cellular pathways, there is accumulating evidence that they represent preferential targets for viral infections and that PML plays a role in the mechanism of the antiviral action of interferon []. The Sp100 domain is usually found at the amino terminus of proteins that contain a SAND domain IPR000770 from INTERPRO. ; GO: 0005634 nucleus
Probab=26.16 E-value=26 Score=31.51 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=47.2
Q ss_pred HHHHHHHHhhccccccCCCchhHHHHHhhcccCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 008737 457 VTEIYALQLYTPRLLSLQDCNFVRDTFQNITSNYCPPLEHYLKIVNAGLGMISFGVLLC 515 (555)
Q Consensus 457 ~n~~~~L~~~~P~l~~L~~C~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~ 515 (555)
+..++++.+-+|+|+.|.|+.|+-+.--.-+.+-|..+.+--+-+|.-|==+--....+
T Consensus 15 vEIa~AI~kpFPfl~gLrD~~~ItE~~y~e~~e~crnlvpv~rvvY~vLs~Lek~f~~~ 73 (103)
T PF03172_consen 15 VEIAYAITKPFPFLEGLRDHSFITEQMYKESQEACRNLVPVQRVVYNVLSWLEKTFIRS 73 (103)
T ss_pred HHHHHHHcccchHHHHhhhcccccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhHH
Confidence 56677888999999999999999988555556899999988888888776665555444
No 55
>PF07662 Nucleos_tra2_C: Na+ dependent nucleoside transporter C-terminus; InterPro: IPR011657 This entry consists of nucleoside transport proteins. Q62773 from SWISSPROT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. Q62674 from SWISSPROT is a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine. It also transports the anti-viral nucleoside analogues AZT and ddC []. This entry covers the C terminus of this family of transporters.; PDB: 3TIJ_A.
Probab=25.99 E-value=2.5e+02 Score=28.39 Aligned_cols=54 Identities=15% Similarity=0.369 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chhhHHHHHHHHHHHHHHHHHHH
Q 008737 249 IRKVFNAVRSALITVAALMLLLSIIGLFLSIL-------RHKHAIHIFILSGWLLVAITFIL 303 (555)
Q Consensus 249 I~~~Ld~V~~~l~~vaavmL~La~lGlv~~~~-------~~~~~~~~~~i~gwilv~~twil 303 (555)
-+.+.|.+++++.+.+-++-.++++.++=+++ |.+. +.+=.++||++-.+.|++
T Consensus 48 ~~Ga~~g~~la~~I~a~LIafvalial~N~~l~~ig~~~g~~~-lsl~~ilGyif~P~awlm 108 (210)
T PF07662_consen 48 SNGALDGLKLALNIGAMLIAFVALIALLNGVLGWIGSLFGIEG-LSLQQILGYIFSPLAWLM 108 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT-TT---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc-ccHHHHHhhhhhHHHHHc
Confidence 44567778888777776666666655533332 3222 456667888888888876
No 56
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.78 E-value=3.2e+02 Score=28.07 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhHHhHHhhHHHHHHHH
Q 008737 229 RDLSTAANTLADKTSENSAKIRKVFN 254 (555)
Q Consensus 229 ~~Lns~A~~L~~ki~~n~~~I~~~Ld 254 (555)
.++++..+.+.+|...-.+++.++..
T Consensus 183 Ddl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 183 DDLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555444
No 57
>PF14979 TMEM52: Transmembrane 52
Probab=25.63 E-value=86 Score=29.97 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=16.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Q 008737 99 YWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRI 135 (555)
Q Consensus 99 YwaSV~fTgipg~~iA~~Wfi~fGl~l~~~~cc~~~~ 135 (555)
-|-+.-+-+ ..+++++.+++-|+...+..|||.++
T Consensus 15 ~W~~LWyIw--Lill~~~llLLCG~ta~C~rfCClrk 49 (154)
T PF14979_consen 15 RWSSLWYIW--LILLIGFLLLLCGLTASCVRFCCLRK 49 (154)
T ss_pred ceehhhHHH--HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355544443 23333333333466666656555443
No 58
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=25.07 E-value=3.3e+02 Score=30.17 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhch
Q 008737 261 ITVAALMLLLSIIGLFLSILRH 282 (555)
Q Consensus 261 ~~vaavmL~La~lGlv~~~~~~ 282 (555)
+.+.+.++++++-+++.+++|.
T Consensus 350 L~Lt~gT~~~s~~~~va~ifGM 371 (414)
T KOG2662|consen 350 LLLTIGTFCLSVFSVVAGIFGM 371 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4555666788887888888884
No 59
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.85 E-value=5.5e+02 Score=23.66 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=7.0
Q ss_pred HHHHHHHHHhh
Q 008737 229 RDLSTAANTLA 239 (555)
Q Consensus 229 ~~Lns~A~~L~ 239 (555)
.+|+..|+...
T Consensus 67 d~L~~~as~F~ 77 (116)
T KOG0860|consen 67 DQLQAGASQFE 77 (116)
T ss_pred HHHHHHHHHHH
Confidence 56666666654
No 60
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=24.76 E-value=1.1e+02 Score=26.28 Aligned_cols=61 Identities=28% Similarity=0.350 Sum_probs=35.3
Q ss_pred hccccccCCCchhHHHHHhhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 008737 466 YTPRLLSLQDCNFVRDTFQNITSNYCPPLEHYLKIVNAGLGMISFGVLLCLLLWILYANRPQREEV 531 (555)
Q Consensus 466 ~~P~l~~L~~C~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wi~~ar~~~~~~~ 531 (555)
.+|.+..-.-=+..|||+-.+-...=|.+ .-.--+|+++..+|+-. +-=|++| |.|+|.++
T Consensus 11 vIPg~~a~yGiklMRD~~F~~~~~p~~~l---wlqfl~G~~lf~~G~~F-i~GfI~~-RDRKrnkV 71 (77)
T PF11118_consen 11 VIPGILAAYGIKLMRDTVFGILFSPFPSL---WLQFLAGLLLFAIGVGF-IAGFILH-RDRKRNKV 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhH---HHHHHHHHHHHHHHHHH-HHhHhhe-eecccccc
Confidence 44555445555778999999876554444 11122577777666643 2348887 34344444
No 61
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=24.67 E-value=1.8e+02 Score=25.41 Aligned_cols=19 Identities=21% Similarity=0.083 Sum_probs=10.5
Q ss_pred HHHHHhhhhcccccccccc
Q 008737 160 AAIGCILLSVGQDEFHGEA 178 (555)
Q Consensus 160 ai~Gcivl~~Gn~kfh~~~ 178 (555)
.+++-+++.+|...-+.++
T Consensus 48 f~ia~~~ll~ga~~n~~~~ 66 (97)
T PF06749_consen 48 FIIAEALLLAGASMNARHT 66 (97)
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 4556666666665544443
No 62
>PF13244 DUF4040: Domain of unknown function (DUF4040)
Probab=24.61 E-value=55 Score=27.14 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=23.4
Q ss_pred CCcchhhhhhhhhhhhHHHHHHHHHH
Q 008737 94 ITNKHYWASVGFTGASAFILAVIWFI 119 (555)
Q Consensus 94 I~nkhYwaSV~fTgipg~~iA~~Wfi 119 (555)
+..||+..+++..|+-|+.++.+|.+
T Consensus 12 ~~~~~~l~avi~~~~~g~~~al~f~~ 37 (70)
T PF13244_consen 12 VFSRSRLAAVIALGVFGFLIALLFVL 37 (70)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999988
No 63
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=24.57 E-value=3.5e+02 Score=24.73 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=36.5
Q ss_pred hhhhhhhhhhHHHHH--------HHHHHHHHHHHH---H-HHHhCCcccCCCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 008737 100 WASVGFTGASAFILA--------VIWFISFGLVLV---A-HHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILL 167 (555)
Q Consensus 100 waSV~fTgipg~~iA--------~~Wfi~fGl~l~---~-~~cc~~~~~~k~~~s~~~~~i~lilLllfTi~ai~Gcivl 167 (555)
.-|+++|.+|++.+. .++++ +|+++. + ..+|= .- +.++..+-+...+++.++.+++.++|+.-.
T Consensus 25 vLsIiLT~ipF~~vm~~~~~~~~~~~~i-~~lA~iQi~vqLvyFl-HM--~~~~eg~w~~~~~iFt~~i~vivvvGS~Wv 100 (111)
T COG3125 25 VLSIILTLIPFWVVMTGALSSTVTLIII-LGLAVIQILVHLVYFL-HM--NTKSEGRWNMGALIFTIFIIVIVVVGSIWV 100 (111)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHH-HHHHHHHHHHHHHHHh-cc--cCCcccceehHHHHHHHHHHHHHHHHHHHH
Confidence 468999999977653 34444 455543 1 22221 11 222333455566677777777778888654
No 64
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=24.39 E-value=6.1e+02 Score=24.02 Aligned_cols=10 Identities=30% Similarity=0.239 Sum_probs=5.1
Q ss_pred ccchhhhhHH
Q 008737 176 GEAMHTLKYV 185 (555)
Q Consensus 176 ~~~~~t~~~v 185 (555)
+++.+++|++
T Consensus 27 kkv~~tldev 36 (139)
T COG4768 27 KKVSKTLDEV 36 (139)
T ss_pred HHHHHHHHHH
Confidence 4455566633
No 65
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=24.13 E-value=1e+02 Score=25.23 Aligned_cols=29 Identities=28% Similarity=0.623 Sum_probs=22.9
Q ss_pred CcccCCcchhhhhhhhhhhhHHHHHHHHHHH
Q 008737 90 GGWDITNKHYWASVGFTGASAFILAVIWFIS 120 (555)
Q Consensus 90 GG~nI~nkhYwaSV~fTgipg~~iA~~Wfi~ 120 (555)
-|||+++-.| ++.--|++..++-..||..
T Consensus 28 ~~w~ltqneY--lt~MiGiWiVilFLtWf~l 56 (67)
T PF10854_consen 28 TTWNLTQNEY--LTIMIGIWIVILFLTWFLL 56 (67)
T ss_pred eeeccccchh--HHHHHHHHHHHHHHHHHHH
Confidence 3799999999 5677788877777888764
No 66
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=24.02 E-value=26 Score=32.59 Aligned_cols=31 Identities=29% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccc
Q 008737 504 GLGMISFGVLLCLLLWILYANRPQREEVFVN 534 (555)
Q Consensus 504 gl~~lS~~~~l~~i~Wi~~ar~~~~~~~~~~ 534 (555)
++.++|+++++.++.-+++.||.||||.+..
T Consensus 82 ~~sal~v~lVl~llsg~lv~rrcrrr~~~tt 112 (129)
T PF12191_consen 82 LGSALSVVLVLALLSGFLVWRRCRRREKFTT 112 (129)
T ss_dssp -------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhccccCCC
Confidence 4455555555555444444555566666655
No 67
>PF14979 TMEM52: Transmembrane 52
Probab=23.63 E-value=1.1e+02 Score=29.35 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=23.0
Q ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 008737 488 SNYCPPLEHYLKIVNAGLGMISFGVLLC 515 (555)
Q Consensus 488 ~~~C~~L~~~~~~v~~gl~~lS~~~~l~ 515 (555)
+++|++-.+..+..|++|+++.+.++|+
T Consensus 7 ~e~C~~~~~W~~LWyIwLill~~~llLL 34 (154)
T PF14979_consen 7 PEMCPPQTRWSSLWYIWLILLIGFLLLL 34 (154)
T ss_pred cccCCCccceehhhHHHHHHHHHHHHHH
Confidence 5789987788889999999988877654
No 68
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.04 E-value=4.5e+02 Score=27.57 Aligned_cols=16 Identities=13% Similarity=0.339 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHH
Q 008737 222 DDIDKLNRDLSTAANT 237 (555)
Q Consensus 222 ~~Id~l~~~Lns~A~~ 237 (555)
+.+|.+..++.++...
T Consensus 208 ~~VDsIe~nve~a~~n 223 (269)
T KOG0811|consen 208 ELVDSIEANVENASVN 223 (269)
T ss_pred hHHhHHHHHHHHHHHH
Confidence 3566666666655554
No 69
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=23.02 E-value=4.8e+02 Score=26.92 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHhhHHHHHHHHHHH
Q 008737 223 DIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVR 257 (555)
Q Consensus 223 ~Id~l~~~Lns~A~~L~~ki~~n~~~I~~~Ld~V~ 257 (555)
+++.+...+...+++..+-+.+|.+.+.++++..+
T Consensus 95 ~L~~lL~~~~~~a~~~~~~l~~n~~~L~~~~~~L~ 129 (267)
T PF11887_consen 95 QLDALLLSATGLADTGTDFLADNRDNLIRALDDLR 129 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444444444555555555555555555444433
No 70
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=22.89 E-value=1.1e+03 Score=27.99 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=7.3
Q ss_pred cccccccccCc
Q 008737 81 ILNHFRRYQGG 91 (555)
Q Consensus 81 pL~~f~~Y~GG 91 (555)
|++.|.+.+=|
T Consensus 241 pl~~f~~r~~G 251 (709)
T COG2274 241 PLSYFEKRSVG 251 (709)
T ss_pred cHHHccCCChh
Confidence 77888855533
No 71
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=22.46 E-value=2.2e+02 Score=23.70 Aligned_cols=28 Identities=7% Similarity=0.163 Sum_probs=18.2
Q ss_pred HhccchhHHHHHHHHHHHHhhhhhcccc
Q 008737 185 VVNQSDYTVKTLRNVTEYLSLAKTINVA 212 (555)
Q Consensus 185 vv~qa~~tv~tLrNVt~~L~~ak~~~V~ 212 (555)
.++.++++-..|..+...++.....+-.
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~ 32 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKK 32 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777766554433
No 72
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=22.22 E-value=3.1e+02 Score=23.09 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=20.5
Q ss_pred chhhhHHHHHHHHHHHHHHhhHHhHH
Q 008737 219 AVMDDIDKLNRDLSTAANTLADKTSE 244 (555)
Q Consensus 219 dv~~~Id~l~~~Lns~A~~L~~ki~~ 244 (555)
..|..+++++++|......+.++...
T Consensus 6 ~E~r~L~eiEr~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 6 HEQRRLEEIERQLRADDPRFAARLRS 31 (82)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHhcc
Confidence 34668889999998888888777766
No 73
>PF07043 DUF1328: Protein of unknown function (DUF1328); InterPro: IPR009760 This entry represents several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown but is thought to be a membrane protein.; GO: 0005886 plasma membrane
Probab=21.93 E-value=1.2e+02 Score=22.70 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=19.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008737 102 SVGFTGASAFILAVIWFISFGLVLVA 127 (555)
Q Consensus 102 SV~fTgipg~~iA~~Wfi~fGl~l~~ 127 (555)
-.||+|+.|.+..+++++ |.+.+.+
T Consensus 12 ~lGF~Giag~a~~iAkiL-f~iflvl 36 (39)
T PF07043_consen 12 VLGFGGIAGTAAGIAKIL-FFIFLVL 36 (39)
T ss_pred HcCcccHHHHHHHHHHHH-HHHHHHH
Confidence 468999999999999988 6655543
No 74
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=21.77 E-value=72 Score=24.13 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 008737 497 YLKIVNAGLGMISFGVLLCLLLWILYANRPQREE 530 (555)
Q Consensus 497 ~~~~v~~gl~~lS~~~~l~~i~Wi~~ar~~~~~~ 530 (555)
|---||.+..+..+ ++..+++|....+++.+++
T Consensus 4 y~~yVW~sYg~t~l-~l~~li~~~~~~~r~~~~~ 36 (45)
T TIGR03141 4 YAFYVWLAYGITAL-VLAGLILWSLLDRRRLLRE 36 (45)
T ss_pred ccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34457888777444 4456778888554433333
No 75
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=21.65 E-value=7.1e+02 Score=23.73 Aligned_cols=13 Identities=38% Similarity=0.455 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 008737 261 ITVAALMLLLSII 273 (555)
Q Consensus 261 ~~vaavmL~La~l 273 (555)
..+++++.+++.+
T Consensus 125 nl~aa~~~~~aa~ 137 (144)
T PF11657_consen 125 NLVAAVLVLLAAC 137 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555443
No 76
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=21.51 E-value=3.1e+02 Score=26.57 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=14.6
Q ss_pred ccccccCcccCCcchhhhhhhhhh
Q 008737 84 HFRRYQGGWDITNKHYWASVGFTG 107 (555)
Q Consensus 84 ~f~~Y~GG~nI~nkhYwaSV~fTg 107 (555)
-+|+|.|||-- |.||.=..+|-
T Consensus 63 ~lR~~aGG~Ha--~t~~~C~i~S~ 84 (184)
T smart00793 63 FLRRFAGGAHA--KSSLLCTLLSI 84 (184)
T ss_pred HHHhhCCceec--CCcHHHHHHHH
Confidence 36899999974 55665544443
No 77
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.41 E-value=4.4e+02 Score=26.94 Aligned_cols=16 Identities=13% Similarity=0.127 Sum_probs=8.7
Q ss_pred CCcccccchhcccccc
Q 008737 409 SYEVSIANASKVWQNY 424 (555)
Q Consensus 409 ~gev~i~na~~v~~~~ 424 (555)
.|+|++..+..-..++
T Consensus 165 egQVpL~kL~~~l~KL 180 (224)
T PF13829_consen 165 EGQVPLRKLQKTLMKL 180 (224)
T ss_pred CCceeHHHHHHHHHhC
Confidence 4566666665544443
No 78
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=21.27 E-value=4e+02 Score=27.85 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=12.6
Q ss_pred HHHHHHHHhhhhhhhHhhHhhhhC
Q 008737 304 CGVFVILNNAISDTCMAMDEWVDH 327 (555)
Q Consensus 304 ~Gv~l~l~~~~~DtC~Am~e~~~~ 327 (555)
.|+..++...++|+=.-.|.+-++
T Consensus 184 aall~liG~sVnd~Ivv~drire~ 207 (289)
T PRK13022 184 AALLTIIGYSLNDTVVVFDRIREN 207 (289)
T ss_pred HHHHHHHHHheeceEEEeeHHHHH
Confidence 344444555666665555555444
No 79
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.17 E-value=5.1e+02 Score=21.86 Aligned_cols=6 Identities=50% Similarity=0.877 Sum_probs=2.2
Q ss_pred HHHHHH
Q 008737 248 KIRKVF 253 (555)
Q Consensus 248 ~I~~~L 253 (555)
+++++.
T Consensus 69 ~v~~~~ 74 (90)
T PF06103_consen 69 KVDPVF 74 (90)
T ss_pred hHHHHH
Confidence 333333
No 80
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=21.04 E-value=1.1e+02 Score=26.81 Aligned_cols=7 Identities=14% Similarity=0.325 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 008737 110 AFILAVI 116 (555)
Q Consensus 110 g~~iA~~ 116 (555)
.++|+.+
T Consensus 37 ~lvI~~i 43 (94)
T PF05393_consen 37 FLVICGI 43 (94)
T ss_pred HHHHHHH
Confidence 4455443
No 81
>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed
Probab=20.45 E-value=1.5e+02 Score=21.36 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 008737 261 ITVAALMLLLSIIGLFLSIL 280 (555)
Q Consensus 261 ~~vaavmL~La~lGlv~~~~ 280 (555)
+.+|++|..|+++|+.+++.
T Consensus 6 f~~A~i~~~LvlvGlalGf~ 25 (32)
T PRK11876 6 FGIAALFWVLIPVGLAGGAL 25 (32)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45688889999989887764
No 82
>PRK11677 hypothetical protein; Provisional
Probab=20.38 E-value=5.2e+02 Score=24.28 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccccc
Q 008737 150 LILLIVFTCAAAIGCILLSVGQDE 173 (555)
Q Consensus 150 lilLllfTi~ai~Gcivl~~Gn~k 173 (555)
.+.++.|.+.+++|.+++..++.+
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccch
Confidence 344566655566666666444433
No 83
>KOG4455 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.20 E-value=5.1e+02 Score=23.63 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=15.0
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHH
Q 008737 242 TSENSAKIRKVFNAVRSALITVAAL 266 (555)
Q Consensus 242 i~~n~~~I~~~Ld~V~~~l~~vaav 266 (555)
+.+|.+.++-+.+....+.-+.|+.
T Consensus 19 v~nN~kvl~f~Rt~~s~i~G~aAGI 43 (110)
T KOG4455|consen 19 VRNNKKVLEFVRTSSSAIAGCAAGI 43 (110)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777666544444443
No 84
>PRK06280 hypothetical protein; Provisional
Probab=20.11 E-value=74 Score=27.06 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.6
Q ss_pred cchhhhhhhhhhhhHHHHHHHHHH
Q 008737 96 NKHYWASVGFTGASAFILAVIWFI 119 (555)
Q Consensus 96 nkhYwaSV~fTgipg~~iA~~Wfi 119 (555)
-|+...+++..|+.||.++..|.+
T Consensus 20 ~r~~l~avi~~g~~gl~~al~f~~ 43 (77)
T PRK06280 20 QKDLIKCAILTGFGGLGLAYLYQL 43 (77)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999887
No 85
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=20.08 E-value=1e+03 Score=25.05 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=5.3
Q ss_pred hhHhhhhCCC
Q 008737 320 AMDEWVDHPH 329 (555)
Q Consensus 320 Am~e~~~~p~ 329 (555)
..+|+.-+|.
T Consensus 285 ~i~~n~l~P~ 294 (355)
T COG0628 285 QIEGNILRPK 294 (355)
T ss_pred HHhcceeccc
Confidence 3455555553
Done!