Query 008737
Match_columns 555
No_of_seqs 148 out of 168
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 10:33:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 61.4 2.7 9.4E-05 30.9 1.1 7 490-496 2-8 (44)
2 3hd7_A Vesicle-associated memb 50.4 91 0.0031 25.8 9.0 10 229-238 43-52 (91)
3 2jwa_A Receptor tyrosine-prote 48.0 7.2 0.00025 28.7 1.5 7 490-496 1-7 (44)
4 2jp3_A FXYD domain-containing 45.9 11 0.00038 30.1 2.3 25 100-128 14-38 (67)
5 2jo1_A Phospholemman; FXYD1, N 44.5 17 0.00058 29.3 3.2 26 100-129 13-38 (72)
6 3hd7_B Syntaxin-1A; membrane p 38.6 1.6E+02 0.0055 25.0 8.9 18 221-238 48-65 (109)
7 4ev6_A Magnesium transport pro 38.4 1.5E+02 0.0051 29.8 10.1 20 259-281 281-300 (339)
8 2zxe_G FXYD10, phospholemman-l 38.3 13 0.00045 30.1 1.7 26 100-129 16-41 (74)
9 3s8f_C Cytochrome C oxidase po 36.2 30 0.001 24.1 3.0 26 97-125 6-31 (34)
10 2iub_A CORA, divalent cation t 33.6 75 0.0026 32.4 7.1 21 258-281 304-324 (363)
11 3gm3_A Protein tyrosine kinase 33.4 1E+02 0.0034 28.4 7.0 28 216-243 75-102 (153)
12 1deq_A Fibrinogen (alpha chain 26.9 1.6E+02 0.0053 30.9 7.9 76 170-252 61-139 (390)
13 1q90_M Cytochrome B6F complex 23.0 80 0.0027 22.6 3.4 20 261-280 7-26 (39)
14 1vf5_F Protein PET M; photosyn 21.4 94 0.0032 21.8 3.4 20 261-280 6-25 (35)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=61.38 E-value=2.7 Score=30.93 Aligned_cols=7 Identities=29% Similarity=0.491 Sum_probs=3.6
Q ss_pred CCccHHH
Q 008737 490 YCPPLEH 496 (555)
Q Consensus 490 ~C~~L~~ 496 (555)
.||+..+
T Consensus 2 gCp~~~s 8 (44)
T 2ks1_B 2 GCPTNGP 8 (44)
T ss_dssp CCCCCCS
T ss_pred CCCCCCC
Confidence 4665543
No 2
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=50.44 E-value=91 Score=25.81 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=4.9
Q ss_pred HHHHHHHHHh
Q 008737 229 RDLSTAANTL 238 (555)
Q Consensus 229 ~~Lns~A~~L 238 (555)
.+|.+.+...
T Consensus 43 ~~L~~~s~~F 52 (91)
T 3hd7_A 43 DALQAGASQF 52 (91)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555554444
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=48.01 E-value=7.2 Score=28.71 Aligned_cols=7 Identities=29% Similarity=0.710 Sum_probs=3.9
Q ss_pred CCccHHH
Q 008737 490 YCPPLEH 496 (555)
Q Consensus 490 ~C~~L~~ 496 (555)
.||...+
T Consensus 1 gCp~~~~ 7 (44)
T 2jwa_A 1 GCPAEQR 7 (44)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 3776543
No 4
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=45.88 E-value=11 Score=30.09 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=19.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008737 100 WASVGFTGASAFILAVIWFISFGLVLVAH 128 (555)
Q Consensus 100 waSV~fTgipg~~iA~~Wfi~fGl~l~~~ 128 (555)
|+++=.. |+++|++.|+ .||+++++
T Consensus 14 Y~tLRig---GLifA~vLfi-~GI~iilS 38 (67)
T 2jp3_A 14 WESLQLG---GLIFGGLLCI-AGIALALS 38 (67)
T ss_dssp GHHHHHH---HHHHHHHHHH-HHHHHHHT
T ss_pred hHHheec---chhhHHHHHH-HHHHHHHc
Confidence 5665544 5899999998 69998884
No 5
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=44.47 E-value=17 Score=29.31 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=19.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008737 100 WASVGFTGASAFILAVIWFISFGLVLVAHH 129 (555)
Q Consensus 100 waSV~fTgipg~~iA~~Wfi~fGl~l~~~~ 129 (555)
|+++=.. |+++|++.|+ .||+++++-
T Consensus 13 Y~tLRiG---GLifA~vLfi-~GI~iilS~ 38 (72)
T 2jo1_A 13 YQSLQIG---GLVIAGILFI-LGILIVLSR 38 (72)
T ss_dssp THHHHHH---HHHHHHHHHH-HHHHHHHHH
T ss_pred hHHhhcc---chHHHHHHHH-HHHHHHHcC
Confidence 4555443 6899999998 699888844
No 6
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=38.64 E-value=1.6e+02 Score=25.02 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 008737 221 MDDIDKLNRDLSTAANTL 238 (555)
Q Consensus 221 ~~~Id~l~~~Lns~A~~L 238 (555)
.+.+|.++.++.++.+.+
T Consensus 48 ge~Id~Ie~nv~~a~~~v 65 (109)
T 3hd7_B 48 GEMIDRIEYNVEHAVDYV 65 (109)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345666666666555554
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=38.36 E-value=1.5e+02 Score=29.82 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 008737 259 ALITVAALMLLLSIIGLFLSILR 281 (555)
Q Consensus 259 ~l~~vaavmL~La~lGlv~~~~~ 281 (555)
.|-+++++++.+.+ +.|++|
T Consensus 281 ~LTiit~IflP~T~---IaGiyG 300 (339)
T 4ev6_A 281 ILTMVTTIFAVPMW---ITGIYG 300 (339)
T ss_dssp HHHHHHHHSSHHHH---HHHHTT
T ss_pred HHHHHHHHHHHHHH---HHhhcc
Confidence 34444555555554 555555
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=38.25 E-value=13 Score=30.14 Aligned_cols=26 Identities=12% Similarity=0.422 Sum_probs=19.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008737 100 WASVGFTGASAFILAVIWFISFGLVLVAHH 129 (555)
Q Consensus 100 waSV~fTgipg~~iA~~Wfi~fGl~l~~~~ 129 (555)
|+++=.. |+++|++.|+ .||+++++-
T Consensus 16 Y~tLRig---GLifA~vLfi-~GI~iilS~ 41 (74)
T 2zxe_G 16 YYRLRVV---GLIVAAVLCV-IGIIILLAG 41 (74)
T ss_dssp HHHHHHH---HHHHHHHHHH-HHHHHHTTT
T ss_pred hHHheec---cchhHHHHHH-HHHHHHHcC
Confidence 5666544 5899999998 698888743
No 9
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=36.18 E-value=30 Score=24.07 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=19.0
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 008737 97 KHYWASVGFTGASAFILAVIWFISFGLVL 125 (555)
Q Consensus 97 khYwaSV~fTgipg~~iA~~Wfi~fGl~l 125 (555)
|-=|+||.+-| ..|-+.|+..|++.+
T Consensus 6 ~GTl~~V~ilg---~~I~i~W~~vf~lFl 31 (34)
T 3s8f_C 6 KGALAVILVLT---LTILVFWLGVYAVFF 31 (34)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred cceehHHHHHH---HHHHHHHHHHHeeee
Confidence 44578888775 678889998776654
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=33.59 E-value=75 Score=32.39 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 008737 258 SALITVAALMLLLSIIGLFLSILR 281 (555)
Q Consensus 258 ~~l~~vaavmL~La~lGlv~~~~~ 281 (555)
..|-+++++++.+.| +.|++|
T Consensus 304 k~LTiit~IflP~T~---IaGiyG 324 (363)
T 2iub_A 304 KVLTIIATIFMPLTF---IAGIYG 324 (363)
T ss_dssp HHHHHHHHHHHHHHH---HTTSCC
T ss_pred HHHHHHHHHHHHHHH---HHhhhc
Confidence 344455555555554 555555
No 11
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=33.44 E-value=1e+02 Score=28.37 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=20.4
Q ss_pred cccchhhhHHHHHHHHHHHHHHhhHHhH
Q 008737 216 LPSAVMDDIDKLNRDLSTAANTLADKTS 243 (555)
Q Consensus 216 lP~dv~~~Id~l~~~Lns~A~~L~~ki~ 243 (555)
+|+..+..|+-...-||+...+|-++.+
T Consensus 75 lp~s~~~EIema~k~L~kDM~eLIs~Mk 102 (153)
T 3gm3_A 75 LPSSSRTEIEGTQKLLNKDLAELINKMR 102 (153)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888877778877777755543
No 12
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.94 E-value=1.6e+02 Score=30.95 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=42.6
Q ss_pred ccccccccchhhhh---HHhccchhHHHHHHHHHHHHhhhhhccccccccccchhhhHHHHHHHHHHHHHHhhHHhHHhh
Q 008737 170 GQDEFHGEAMHTLK---YVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENS 246 (555)
Q Consensus 170 Gn~kfh~~~~~t~~---~vv~qa~~tv~tLrNVt~~L~~ak~~~V~~i~lP~dv~~~Id~l~~~Lns~A~~L~~ki~~n~ 246 (555)
-+.+|..++++..+ ++-+...++..-++++++++....+ +++ +..+.+.++..+|..--..|.+++.+++
T Consensus 61 ~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~-q~~------dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 61 VDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFA-KAN------NNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-hhc------cchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555543333 3344455666667777777754322 221 3344666677777777777777776666
Q ss_pred HHHHHH
Q 008737 247 AKIRKV 252 (555)
Q Consensus 247 ~~I~~~ 252 (555)
..|+..
T Consensus 134 ~~ir~L 139 (390)
T 1deq_A 134 QRINLL 139 (390)
T ss_pred HHHHHH
Confidence 654443
No 13
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=23.01 E-value=80 Score=22.60 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 008737 261 ITVAALMLLLSIIGLFLSIL 280 (555)
Q Consensus 261 ~~vaavmL~La~lGlv~~~~ 280 (555)
+.+|++|..|.++|+.+++.
T Consensus 7 f~~A~i~~~L~LvGla~Gf~ 26 (39)
T 1q90_M 7 AGTALTMVGMTLVGLAIGFV 26 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999887764
No 14
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=21.39 E-value=94 Score=21.75 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 008737 261 ITVAALMLLLSIIGLFLSIL 280 (555)
Q Consensus 261 ~~vaavmL~La~lGlv~~~~ 280 (555)
+-+|++|..|.++|+.+++.
T Consensus 6 f~~A~i~~~LvLvGla~Gf~ 25 (35)
T 1vf5_F 6 LYAALLSFGLIFVGWGLGVL 25 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44588888999988877764
Done!