Query 008737
Match_columns 555
No_of_seqs 148 out of 168
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 10:34:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008737.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008737hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t72a_ a.7.12.1 (A:) Phosphat 20.1 50 0.0036 28.3 4.8 37 169-205 4-40 (215)
2 d1iyca_ g.31.1.2 (A:) Antifung 17.0 29 0.0021 22.1 1.6 17 404-428 15-31 (36)
3 d1ls1a1 a.24.13.1 (A:1-88) Sig 12.4 73 0.0053 24.4 3.3 34 226-259 4-37 (88)
4 d1k04a_ a.24.14.1 (A:) FAT dom 10.3 1.8E+02 0.013 24.1 5.4 53 189-242 40-94 (142)
5 d1sumb_ a.7.12.1 (B:) PhoU hom 9.7 1.5E+02 0.011 25.3 5.0 35 171-205 1-35 (225)
6 d1ykhb1 a.252.1.1 (B:2-130) RN 9.0 2.9E+02 0.021 22.2 6.3 24 221-244 90-113 (129)
7 d1xwma_ a.7.12.1 (A:) Phosphat 7.5 2.4E+02 0.018 23.4 5.4 31 174-204 2-32 (212)
8 d1dx5i2 g.3.11.1 (I:388-422) T 7.1 71 0.0052 20.5 1.0 20 391-412 8-27 (35)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 6.6 1.6E+02 0.012 22.1 3.2 27 489-515 5-31 (91)
10 d2fbea1 b.29.1.22 (A:1-188) Si 6.2 2.2E+02 0.016 24.0 4.3 37 68-104 31-71 (188)
No 1
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=20.13 E-value=50 Score=28.32 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=28.4
Q ss_pred cccccccccchhhhhHHhccchhHHHHHHHHHHHHhh
Q 008737 169 VGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSL 205 (555)
Q Consensus 169 ~Gn~kfh~~~~~t~~~vv~qa~~tv~tLrNVt~~L~~ 205 (555)
.|.-||++++.+..+.+.+-++.+..+++...+.+..
T Consensus 4 ~~~~~~~~~L~~l~~~l~~M~~~v~~~l~~~~~al~~ 40 (215)
T d1t72a_ 4 GGGMKLFKELEETKEQVIKMAKLVQEAIDKATEALNK 40 (215)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888888888888888877776653
No 2
>d1iyca_ g.31.1.2 (A:) Antifungal peptide scarabaecin {Beetle (Oryctes rhinoceros) [TaxId: 72550]}
Probab=17.04 E-value=29 Score=22.05 Aligned_cols=17 Identities=24% Similarity=0.819 Sum_probs=14.5
Q ss_pred cccCCCCcccccchhcccccceeec
Q 008737 404 DRQCGSYEVSIANASKVWQNYTCEL 428 (555)
Q Consensus 404 ~~~C~~gev~i~na~~v~~~~~C~~ 428 (555)
..+||.|. ||..|-|..
T Consensus 15 rsncpkgk--------vwngfdcks 31 (36)
T d1iyca_ 15 RSNCPKGK--------VWNGFDCKS 31 (36)
T ss_dssp TSCCCSSC--------EEETTEEEC
T ss_pred ccCCCCcc--------eecCccccC
Confidence 46899997 999999975
No 3
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=12.40 E-value=73 Score=24.41 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhHHhHHhhHHHHHHHHHHHHH
Q 008737 226 KLNRDLSTAANTLADKTSENSAKIRKVFNAVRSA 259 (555)
Q Consensus 226 ~l~~~Lns~A~~L~~ki~~n~~~I~~~Ld~V~~~ 259 (555)
++..+|.++...+..+..-+-+.|+.++..++.+
T Consensus 4 ~L~~~l~~a~~~l~g~~~i~E~~i~~~l~eir~A 37 (88)
T d1ls1a1 4 QLSARLQEAIGRLRGRGRITEEDLKATLREIRRA 37 (88)
T ss_dssp HHHHHHHHHHHTTTTSCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 3444444444444444333334455555555554
No 4
>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.27 E-value=1.8e+02 Score=24.15 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=32.0
Q ss_pred chhHHHHHHHHHHHHhhhhhcccccc--ccccchhhhHHHHHHHHHHHHHHhhHHh
Q 008737 189 SDYTVKTLRNVTEYLSLAKTINVAQV--FLPSAVMDDIDKLNRDLSTAANTLADKT 242 (555)
Q Consensus 189 a~~tv~tLrNVt~~L~~ak~~~V~~i--~lP~dv~~~Id~l~~~Lns~A~~L~~ki 242 (555)
.++-..-+++|...|.+--+ .++++ .+|...+..|+-...-||+...++.++.
T Consensus 40 ~~~Y~~lVK~VG~~Lr~Ll~-svD~~~~~lp~~~~~eIema~klLskDm~eLi~~M 94 (142)
T d1k04a_ 40 PEEYVPMVKEVGLALRTLLA-TVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 94 (142)
T ss_dssp GGGHHHHHHHHHHHHHHHHH-HHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH-HHHHHhccCcHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666655544322 24433 3677777888887777777766665443
No 5
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=9.73 E-value=1.5e+02 Score=25.30 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=25.5
Q ss_pred cccccccchhhhhHHhccchhHHHHHHHHHHHHhh
Q 008737 171 QDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSL 205 (555)
Q Consensus 171 n~kfh~~~~~t~~~vv~qa~~tv~tLrNVt~~L~~ 205 (555)
|..|+.++++..+.+.+-++.+.+++++....+..
T Consensus 1 ~r~~~~~l~~l~~~i~~M~~~v~~~l~~a~~al~~ 35 (225)
T d1sumb_ 1 NRLLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVE 35 (225)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777788888888888888777666643
No 6
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.04 E-value=2.9e+02 Score=22.16 Aligned_cols=24 Identities=17% Similarity=0.327 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHhhHHhHH
Q 008737 221 MDDIDKLNRDLSTAANTLADKTSE 244 (555)
Q Consensus 221 ~~~Id~l~~~Lns~A~~L~~ki~~ 244 (555)
...|..+..++...+.++.+++.+
T Consensus 90 ~~~i~~Le~E~~~~~~el~~~v~e 113 (129)
T d1ykhb1 90 LRKIDMLQKKLVEVEDEKIEAIKK 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888877777666655
No 7
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]}
Probab=7.54 E-value=2.4e+02 Score=23.38 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=20.9
Q ss_pred ccccchhhhhHHhccchhHHHHHHHHHHHHh
Q 008737 174 FHGEAMHTLKYVVNQSDYTVKTLRNVTEYLS 204 (555)
Q Consensus 174 fh~~~~~t~~~vv~qa~~tv~tLrNVt~~L~ 204 (555)
|++++.+..+.+.+-++.+.+.+.+..+.+.
T Consensus 2 f~~~L~~l~~~i~~M~~~v~~~l~~a~~al~ 32 (212)
T d1xwma_ 2 FADDLASLHNKLIEMGRLTEVALQQAIEAFQ 32 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667777777777777777666554
No 8
>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.06 E-value=71 Score=20.47 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCcccccCCCCcc
Q 008737 391 MPPLCYPYDSQLQDRQCGSYEV 412 (555)
Q Consensus 391 ~p~lCnPf~~~~~~~~C~~gev 412 (555)
-|-.|||..+. +-+||.|-+
T Consensus 8 CPAdCdP~~p~--~C~CPeGyI 27 (35)
T d1dx5i2 8 CPADCDPNTQA--SCECPEGYI 27 (35)
T ss_dssp EECEECTTSTT--CEECCTTEE
T ss_pred CCCccCCCCCC--cccCCCceE
Confidence 36789998876 478888753
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.59 E-value=1.6e+02 Score=22.10 Aligned_cols=27 Identities=4% Similarity=-0.221 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHH
Q 008737 489 NYCPPLEHYLKIVNAGLGMISFGVLLC 515 (555)
Q Consensus 489 ~~C~~L~~~~~~v~~gl~~lS~~~~l~ 515 (555)
+..+|..+....++.-.+.++..+++.
T Consensus 5 dP~gp~a~~i~~L~~~~~~i~~iv~v~ 31 (91)
T d1fftb2 5 DPKGQIGLEQRSLILTAFGLMLIVVIP 31 (91)
T ss_dssp SCCSCCHHHHHHHHHHHHHHTTTTTTH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666676666655555555544443
No 10
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.25 E-value=2.2e+02 Score=24.02 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=19.6
Q ss_pred ceeeccccCCCCCccccccccc---CcccC-Ccchhhhhhh
Q 008737 68 PLLLASNRTKRPDILNHFRRYQ---GGWDI-TNKHYWASVG 104 (555)
Q Consensus 68 ~l~laa~rt~R~DpL~~f~~Y~---GG~nI-~nkhYwaSV~ 104 (555)
+.-....+.+++|.-..|..+. |-=-+ +-+||||=-+
T Consensus 31 ~V~~~~~~~~~p~~p~rF~~~~~VLg~~~fssGrHYWEV~V 71 (188)
T d2fbea1 31 SFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDV 71 (188)
T ss_dssp EEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEEC
T ss_pred EEEECCcCCCCCCCcccccceeeccccccccCCCEEEEEEe
Confidence 3333444455556556665553 22223 4599998543
Done!