Your job contains 1 sequence.
>008738
MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP
VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR
KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAY
SDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCI
ISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAA
LAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQA
ILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVD
GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN
ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKEL
IQNAANLVNLDHLDI
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008738
(555 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2146698 - symbol:GYRB2 "DNA GYRASE B2" species... 2236 8.4e-232 1
UNIPROTKB|Q5NBJ3 - symbol:GYRB "DNA gyrase subunit B, chl... 2127 3.0e-220 1
UNIPROTKB|Q7NHM9 - symbol:gyrB "DNA gyrase subunit B" spe... 1452 1.0e-148 1
UNIPROTKB|A8IIG8 - symbol:TOP3 "DNA gyrase subunit B-like... 1344 2.8e-137 1
TIGR_CMR|CHY_2705 - symbol:CHY_2705 "DNA gyrase, B subuni... 1263 1.1e-128 1
UNIPROTKB|P05652 - symbol:gyrB "DNA gyrase subunit B" spe... 1228 5.5e-125 1
TIGR_CMR|BA_0005 - symbol:BA_0005 "DNA gyrase, B subunit"... 1221 3.0e-124 1
UNIPROTKB|P77993 - symbol:gyrB "DNA gyrase subunit B" spe... 1198 8.3e-122 1
UNIPROTKB|Q8TQG0 - symbol:gyrB "DNA gyrase subunit B" spe... 1196 1.3e-121 1
UNIPROTKB|Q8A277 - symbol:gyrB "DNA gyrase subunit B" spe... 1125 4.5e-114 1
UNIPROTKB|Q8FA30 - symbol:gyrB "DNA gyrase subunit B" spe... 1121 1.2e-113 1
UNIPROTKB|Q74H89 - symbol:gyrB "DNA gyrase subunit B" spe... 939 1.6e-113 2
TIGR_CMR|GSU_0003 - symbol:GSU_0003 "DNA gyrase, B subuni... 939 1.6e-113 2
UNIPROTKB|Q3KMH2 - symbol:gyrB_1 "DNA gyrase subunit B" s... 943 1.8e-112 2
TIGR_CMR|DET_0004 - symbol:DET_0004 "DNA gyrase, B subuni... 1105 5.9e-112 1
UNIPROTKB|Q9KVX3 - symbol:gyrB "DNA gyrase subunit B" spe... 920 1.9e-110 2
TIGR_CMR|VC_0015 - symbol:VC_0015 "DNA gyrase, subunit B"... 920 1.9e-110 2
TIGR_CMR|SO_0011 - symbol:SO_0011 "DNA gyrase, B subunit"... 900 3.9e-110 2
UNIPROTKB|P0AES6 - symbol:gyrB species:83333 "Escherichia... 927 6.3e-110 2
UNIPROTKB|O08399 - symbol:gyrB "DNA gyrase subunit B" spe... 1084 1.0e-109 1
TIGR_CMR|SPO_0155 - symbol:SPO_0155 "DNA gyrase, B subuni... 911 5.6e-109 2
TIGR_CMR|CBU_0004 - symbol:CBU_0004 "DNA gyrase, B subuni... 905 5.7e-107 2
UNIPROTKB|A9WGP2 - symbol:gyrB "DNA gyrase subunit B" spe... 1054 1.5e-106 1
UNIPROTKB|A6UX65 - symbol:gyrB "DNA gyrase subunit B" spe... 889 3.1e-106 2
UNIPROTKB|Q89W70 - symbol:gyrB "DNA gyrase subunit B" spe... 911 1.3e-105 2
TIGR_CMR|BA_3657 - symbol:BA_3657 "DNA topoisomerase IV, ... 1045 1.4e-105 1
UNIPROTKB|P0C5C5 - symbol:gyrB "DNA gyrase subunit B" spe... 910 1.7e-105 2
UNIPROTKB|Q59192 - symbol:parE "DNA topoisomerase 4 subun... 1031 4.1e-104 1
TIGR_CMR|NSE_0721 - symbol:NSE_0721 "DNA gyrase, B subuni... 879 1.7e-103 2
TIGR_CMR|APH_0716 - symbol:APH_0716 "DNA gyrase, B subuni... 843 6.7e-100 2
TIGR_CMR|ECH_0620 - symbol:ECH_0620 "DNA gyrase, B subuni... 839 6.7e-100 2
UNIPROTKB|Q9RVW5 - symbol:DR_0906 "DNA gyrase, subunit B"... 980 1.0e-98 1
UNIPROTKB|O67137 - symbol:gyrB "DNA gyrase subunit B" spe... 978 1.7e-98 1
UNIPROTKB|P35886 - symbol:gyrB "DNA gyrase subunit B" spe... 955 4.7e-96 1
UNIPROTKB|Q7RHG3 - symbol:PY04024 "DNA topoisomerase II, ... 522 5.1e-95 4
TIGR_CMR|CJE_0003 - symbol:CJE_0003 "DNA gyrase, B subuni... 938 3.0e-94 1
GENEDB_PFALCIPARUM|PFL1915w - symbol:PFL1915w "dna gyrase... 503 1.3e-90 4
UNIPROTKB|Q8I528 - symbol:GyrB "Term=DNA gyrase subunit B... 503 1.3e-90 4
UNIPROTKB|O69998 - symbol:O69998 "Putative DNA gyrase sub... 704 1.7e-82 2
UNIPROTKB|Q89M38 - symbol:gyrB "DNA gyrase subunit B" spe... 817 2.0e-81 1
TIGR_CMR|SO_3899 - symbol:SO_3899 "DNA topoisomerase IV, ... 725 1.1e-71 1
UNIPROTKB|A6VD80 - symbol:parE "DNA topoisomerase IV, B s... 721 2.9e-71 1
TIGR_CMR|SPO_1253 - symbol:SPO_1253 "DNA topoisomerase IV... 716 9.9e-71 1
UNIPROTKB|Q9KPD9 - symbol:VC_2431 "Topoisomerase IV, subu... 715 1.3e-70 1
TIGR_CMR|VC_2431 - symbol:VC_2431 "topoisomerase IV, subu... 715 1.3e-70 1
TIGR_CMR|CBU_0064 - symbol:CBU_0064 "DNA topoisomerase IV... 706 1.1e-69 1
UNIPROTKB|P20083 - symbol:parE species:83333 "Escherichia... 697 1.0e-68 1
TAIR|locus:2146658 - symbol:GYRB3 "DNA GYRASE B3" species... 656 2.3e-64 1
UNIPROTKB|Q3KL33 - symbol:gyrB_2 "DNA gyrase subunit B" s... 418 7.8e-46 2
UNIPROTKB|Q8A3C1 - symbol:BT_3033 "DNA topoisomerase IV s... 410 6.7e-45 2
DICTYBASE|DDB_G0279737 - symbol:top2mt "DNA topoisomerase... 330 1.2e-26 1
UNIPROTKB|Q8EYL9 - symbol:LA_4194 "DNA gyrase subunit B" ... 307 1.7e-24 1
UNIPROTKB|F1Q2M4 - symbol:TOP2A "DNA topoisomerase 2" spe... 305 1.1e-23 1
UNIPROTKB|J9PAY8 - symbol:TOP2A "DNA topoisomerase 2" spe... 305 1.1e-23 1
MGI|MGI:98790 - symbol:Top2a "topoisomerase (DNA) II alph... 269 1.9e-23 2
UNIPROTKB|P11388 - symbol:TOP2A "DNA topoisomerase 2-alph... 267 2.6e-23 2
UNIPROTKB|P41515 - symbol:TOP2A "DNA topoisomerase 2-alph... 265 5.4e-23 2
RGD|62048 - symbol:Top2a "topoisomerase (DNA) II alpha" s... 270 6.3e-23 2
UNIPROTKB|Q0DYE1 - symbol:Os02g0699700 "DNA topoisomerase... 293 1.2e-22 1
UNIPROTKB|O46374 - symbol:TOP2A "DNA topoisomerase 2-alph... 262 1.2e-22 2
UNIPROTKB|F1MDU7 - symbol:TOP2A "DNA topoisomerase 2" spe... 259 2.1e-22 2
UNIPROTKB|F1NR58 - symbol:TOP2B "DNA topoisomerase 2" spe... 262 2.3e-22 2
UNIPROTKB|O42131 - symbol:TOP2B "DNA topoisomerase 2-beta... 262 2.3e-22 2
UNIPROTKB|E1BZ19 - symbol:TOP2B "DNA topoisomerase 2" spe... 262 2.3e-22 2
WB|WBGene00019884 - symbol:R05D3.12 species:6239 "Caenorh... 252 3.0e-22 2
UNIPROTKB|P34534 - symbol:R05D3.12 "Putative DNA topoisom... 252 3.0e-22 2
UNIPROTKB|Q7RJ69 - symbol:PY03394 "DNA topoisomerase 2" s... 231 4.0e-22 2
UNIPROTKB|E9PCY5 - symbol:TOP2B "DNA topoisomerase 2" spe... 258 4.1e-22 2
ZFIN|ZDB-GENE-041008-136 - symbol:top2b "topoisomerase (D... 257 6.4e-22 2
TAIR|locus:2076201 - symbol:TOPII "AT3G23890" species:370... 289 6.5e-22 1
MGI|MGI:98791 - symbol:Top2b "topoisomerase (DNA) II beta... 258 8.0e-22 2
UNIPROTKB|F1MU48 - symbol:TOP2B "DNA topoisomerase 2" spe... 258 9.9e-22 2
UNIPROTKB|F1PRA7 - symbol:TOP2B "DNA topoisomerase 2" spe... 258 1.0e-21 2
UNIPROTKB|Q64399 - symbol:TOP2B "DNA topoisomerase 2-beta... 258 1.0e-21 2
UNIPROTKB|F1RS45 - symbol:TOP2B "DNA topoisomerase 2" spe... 258 1.0e-21 2
UNIPROTKB|Q02880 - symbol:TOP2B "DNA topoisomerase 2-beta... 258 1.0e-21 2
POMBASE|SPBC1A4.03c - symbol:top2 "DNA topoisomerase II" ... 280 6.6e-21 1
UNIPROTKB|O42130 - symbol:TOP2A "DNA topoisomerase 2-alph... 245 2.6e-20 2
UNIPROTKB|F1M7A0 - symbol:Top2a "DNA topoisomerase 2" spe... 270 3.3e-20 2
UNIPROTKB|F1NZF0 - symbol:TOP2A "DNA topoisomerase 2" spe... 244 3.4e-20 2
UNIPROTKB|E9PTY5 - symbol:Top2a "DNA topoisomerase 2" spe... 270 4.1e-20 2
UNIPROTKB|Q755V8 - symbol:AER410W "DNA topoisomerase 2" s... 270 8.0e-20 1
WB|WBGene00010785 - symbol:top-2 species:6239 "Caenorhabd... 229 1.1e-19 2
UNIPROTKB|Q23670 - symbol:K12D12.1 "Probable DNA topoisom... 229 1.1e-19 2
UNIPROTKB|A8JD08 - symbol:TOP2 "DNA topoisomerase 2" spec... 265 2.2e-19 1
SGD|S000005032 - symbol:TOP2 "Topoisomerase II, relieves ... 261 7.9e-19 1
CGD|CAL0005199 - symbol:TOP2 species:5476 "Candida albica... 255 3.8e-18 1
UNIPROTKB|Q5A1E7 - symbol:TOP2 "DNA topoisomerase 2" spec... 255 3.8e-18 1
UNIPROTKB|F1P2F2 - symbol:TOP2A "DNA topoisomerase 2" spe... 244 4.4e-18 2
FB|FBgn0003732 - symbol:Top2 "Topoisomerase 2" species:72... 212 1.2e-17 2
ZFIN|ZDB-GENE-030131-2453 - symbol:top2a "topoisomerase (... 221 3.7e-16 2
DICTYBASE|DDB_G0270418 - symbol:top2 "DNA topoisomerase I... 241 5.0e-16 2
UNIPROTKB|Q7S9W8 - symbol:NCU06338 "DNA topoisomerase 2" ... 207 5.6e-16 2
ASPGD|ASPL0000029372 - symbol:top2 species:162425 "Emeric... 187 2.3e-14 3
UNIPROTKB|Q5B224 - symbol:AN5406.2 "DNA topoisomerase 2" ... 187 2.3e-14 3
WB|WBGene00022854 - symbol:cin-4 species:6239 "Caenorhabd... 193 1.1e-11 1
UNIPROTKB|G5ECQ8 - symbol:cin-4 "Chromosome instability 4... 193 1.1e-11 1
>TAIR|locus:2146698 [details] [associations]
symbol:GYRB2 "DNA GYRASE B2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0003916 "DNA topoisomerase
activity" evidence=IGI] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005694 GO:GO:0007059 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AL391716
GO:GO:0009330 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
EMBL:AY039521 EMBL:AY142041 IPI:IPI00527008 IPI:IPI00537479
RefSeq:NP_568133.1 RefSeq:NP_850762.1 UniGene:At.10083
ProteinModelPortal:Q94BZ7 SMR:Q94BZ7 STRING:Q94BZ7 PaxDb:Q94BZ7
PRIDE:Q94BZ7 EnsemblPlants:AT5G04130.1 GeneID:830291
KEGG:ath:AT5G04130 GeneFarm:4066 TAIR:At5g04130 eggNOG:COG0187
HOGENOM:HOG000075155 InParanoid:Q94BZ7 KO:K02470 OMA:IGKNEYN
PhylomeDB:Q94BZ7 ProtClustDB:CLSN2689450 Genevestigator:Q94BZ7
GermOnline:AT5G04130 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 Uniprot:Q94BZ7
Length = 732
Score = 2236 (792.2 bits), Expect = 8.4e-232, P = 8.4e-232
Identities = 423/554 (76%), Positives = 470/554 (84%)
Query: 2 IVTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPV 61
++TVLHA NALSE+LEV+VWRDGME+ Q YSRGKP+
Sbjct: 179 VLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGMEHKQNYSRGKPI 238
Query: 62 TTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRK 121
TTLTC VLP++SK +GT IRFWPDK+VFTTAI+FDHNTIAGRIRELAFLNPK+TI+L+K
Sbjct: 239 TTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAFLNPKVTISLKK 298
Query: 122 EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYS 181
ED DPEK QY+EY FAGGL EYV WLNTDK P+HDV+GFR++++G T+D+ALQWCSDAYS
Sbjct: 299 EDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGATVDVALQWCSDAYS 358
Query: 182 DTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCII 241
DTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISLSGEHVREGLTCI+
Sbjct: 359 DTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGLTCIV 418
Query: 242 SVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXX 301
SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPD+
Sbjct: 419 SVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESIISKSLNAYKAAL 478
Query: 302 XXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAI 361
VR KSVL+SSSLPGKLADCSST PE SEIFIVEGDSAGGSAKQGRDRRFQAI
Sbjct: 479 AAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSAKQGRDRRFQAI 538
Query: 362 LPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDG 421
LPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKE LRYHKIIILTDADVDG
Sbjct: 539 LPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHKIIILTDADVDG 598
Query: 422 AHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNA 481
AHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGK QYCYDDA+LKK+ S+FP+NA
Sbjct: 599 AHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDADLKKITSNFPANA 658
Query: 482 LYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI 541
Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV++D AEAN+ FSSLMGARVD RKELI
Sbjct: 659 SYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLMGARVDVRKELI 718
Query: 542 QNAANLVNLDHLDI 555
+NAA +NL LDI
Sbjct: 719 KNAATRINLQRLDI 732
>UNIPROTKB|Q5NBJ3 [details] [associations]
symbol:GYRB "DNA gyrase subunit B,
chloroplastic/mitochondrial" species:39947 "Oryza sativa Japonica
Group" [GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing)
activity" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524 GO:GO:0009507
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
ProtClustDB:CLSN2689450 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 OMA:IFETTEF EMBL:AP001073 EMBL:AP000969
EMBL:AK102391 RefSeq:NP_001042691.1 UniGene:Os.37563
ProteinModelPortal:Q5NBJ3 STRING:Q5NBJ3 PRIDE:Q5NBJ3 GeneID:4326261
KEGG:dosa:Os01t0268300-01 KEGG:osa:4326261 Gramene:Q5NBJ3
Uniprot:Q5NBJ3
Length = 729
Score = 2127 (753.8 bits), Expect = 3.0e-220, P = 3.0e-220
Identities = 404/554 (72%), Positives = 461/554 (83%)
Query: 2 IVTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPV 61
++T++HA NALSE+LEVTVWRDG EY Q YSRGK +
Sbjct: 177 VLTLMHAGGKFGGSKSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKEYRQNYSRGKAI 236
Query: 62 TTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRK 121
T LT L +S RQGTRIRFWPDK +FTT + FD NTIAGRIRELAFLNP+LTIAL K
Sbjct: 237 TMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIALTK 296
Query: 122 EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYS 181
E+ D + Q+NEY +AGGL EYV+WLNTDKK LHD + FRK++DGIT+D++LQWCSD+YS
Sbjct: 297 EEDDLQV-QHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITVDVSLQWCSDSYS 355
Query: 182 DTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCII 241
DT+LGYANSIRTIDGGTHI+G+K SLTRT+N+ KKSKT+KDKDISLSGEHVREG+TCII
Sbjct: 356 DTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTCII 415
Query: 242 SVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXX 301
+V+VPNPEFEGQTKTRLGNPEVR++V+QSVQE LTEYLELHPDV
Sbjct: 416 AVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAAL 475
Query: 302 XXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAI 361
VR KSVL+SSSLPGKLADC+S+ PEESEIFIVEGDSAGGSAKQGRDR+FQAI
Sbjct: 476 AAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSAKQGRDRKFQAI 535
Query: 362 LPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDG 421
LPLRGKILN+ER+DEAA+YKNEEIQNLI ALGLGVKGEDF KEALRYHKI+ILTDADVDG
Sbjct: 536 LPLRGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVILTDADVDG 595
Query: 422 AHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNA 481
AHIRTLLLTFF+RYQK LFDEGCIYVGVPPLYKVERGKQ YCYDDA+LK++ ++FP+NA
Sbjct: 596 AHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTNA 655
Query: 482 LYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI 541
Y IQRFKGLGEMMP QLWETT++PE+RMLKQL +EDAAEANVVFSSLMG RVD RK+LI
Sbjct: 656 SYHIQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTRVDVRKQLI 715
Query: 542 QNAANLVNLDHLDI 555
QNAA++VNL+HLDI
Sbjct: 716 QNAASMVNLEHLDI 729
>UNIPROTKB|Q7NHM9 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
OMA:IFETTEF ProtClustDB:PRK05644 EMBL:BA000045
GenomeReviews:BA000045_GR HSSP:P06982 RefSeq:NP_925452.1
ProteinModelPortal:Q7NHM9 GeneID:2600907 KEGG:gvi:gvip344
PATRIC:22044491 BioCyc:GVIO251221:GH9A-2555-MONOMER Uniprot:Q7NHM9
Length = 644
Score = 1452 (516.2 bits), Expect = 1.0e-148, P = 1.0e-148
Identities = 284/527 (53%), Positives = 364/527 (69%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS L T+WR+G +Y Q++ RG P L + DS+ R+GT I F PD ++FTT
Sbjct: 123 NALSTILTATIWREGKQYIQRFHRGIPEGGLA---VSSDSQKRRGTMISFLPDPEIFTTG 179
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
+ FD +T+ R RELAFLN + R D E + Y + GG+ EYV+++ +K
Sbjct: 180 VDFDFDTLLSRFRELAFLNAG--VEFRFSDLRGETERTESYIYEGGIREYVKYMTREKAA 237
Query: 154 LH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 212
LH D++ ++ DG++++ ALQW +D Y+D +LG+AN+IRTIDGGTH+EG+KA LTRT N
Sbjct: 238 LHPDIIFINQERDGVSVECALQWSTDVYNDNVLGFANNIRTIDGGTHLEGLKAVLTRTFN 297
Query: 213 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 272
S +K+ +KD D +L+GEHVREGLT ++SV+VPNPEFEGQTKT+LGNPEVR +VD +
Sbjct: 298 SFARKANKLKDGDKNLTGEHVREGLTAVLSVKVPNPEFEGQTKTKLGNPEVRGIVDGVIS 357
Query: 273 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 332
E LTEYLE HPDV VR+KS L SS+LPGKLADC S
Sbjct: 358 EKLTEYLEFHPDVVASILEKALQSMQAEEAARKARDLVRRKSALESSTLPGKLADCQSRD 417
Query: 333 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 392
P ESE+F+VEGDSAGGSAKQGRDRRFQAILPLRGKILN+ER D+ +Y N EIQ +I L
Sbjct: 418 PAESEVFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERADDRKIYGNNEIQAMITGL 477
Query: 393 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 452
GLG+K E+F LRYH+III+TDADVDGAHIRTLLLTFFYRY++ L ++G IY+ PPL
Sbjct: 478 GLGLKTEEFDVGRLRYHRIIIMTDADVDGAHIRTLLLTFFYRYKRDLVEQGYIYIAQPPL 537
Query: 453 YKVE----RGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQ 508
YK+ R V+YCY + E + + N Y +QRFKGLGEM QLWETT+NPE
Sbjct: 538 YKISIGGGRNIDVRYCYSEQEKEAILRGLRENQKYELQRFKGLGEMQADQLWETTMNPET 597
Query: 509 RMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 555
R L+Q+ IEDAAEA+ VF+ LMG RV+ R+E I+ + + LDI
Sbjct: 598 RTLRQVTIEDAAEADRVFNILMGDRVEPRREFIETYGPRLQMADLDI 644
>UNIPROTKB|A8IIG8 [details] [associations]
symbol:TOP3 "DNA gyrase subunit B-like protein"
species:3055 "Chlamydomonas reinhardtii" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
ProtClustDB:CLSN2689450 Gene3D:3.40.50.670 EMBL:DS496117
RefSeq:XP_001690535.1 UniGene:Cre.5744 ProteinModelPortal:A8IIG8
STRING:A8IIG8 EnsemblPlants:EDP05794 GeneID:5716144
KEGG:cre:CHLREDRAFT_114600 BioCyc:CHLAMY:CHLREDRAFT_114600-MONOMER
Uniprot:A8IIG8
Length = 649
Score = 1344 (478.2 bits), Expect = 2.8e-137, P = 2.8e-137
Identities = 282/567 (49%), Positives = 369/567 (65%)
Query: 2 IVTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPV 61
++TVLHA NALS LEVTVWR G Y Q+YSRG P+
Sbjct: 84 VLTVLHAGGKFGGDNSGYKVSGGLHGVGISVVNALSSELEVTVWRAGSRYSQRYSRGAPL 143
Query: 62 TTLTCHVLPVDSKD--RQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 119
L +LP S++ R GT++RF D +F + + + IA R+ ELAFLN + TI
Sbjct: 144 EELRVQLLPPGSEEAGRSGTQVRFLYDASIFAKDVAYSADVIATRLHELAFLNARATIRF 203
Query: 120 RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDV-DGITIDLALQWCS 177
R + Q+ + ++GGL E+V L PLH+ +V R D G+ ++ ALQW +
Sbjct: 204 RALRRGKPEGQWQVFQYSGGLREFVGCLQAAYTPLHEALVVTRADGGSGVVVEAALQWAA 263
Query: 178 DAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGL 237
D++ + + G+ANSI T+DGGTH+EG++A LTR + LG+K+K +KD D LSGEHVREGL
Sbjct: 264 DSFKEEVRGFANSIHTVDGGTHMEGLRAGLTRAVTQLGRKAKQIKDSDPPLSGEHVREGL 323
Query: 238 TCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXX 297
++SV+VPNPEFEGQTKTRLGNPEVRK+V+ +V E + E+LE HP
Sbjct: 324 GAVVSVKVPNPEFEGQTKTRLGNPEVRKIVENAVYEAVGEWLEAHPAALAALCAKALTSA 383
Query: 298 XXXXXXXXXXXXVRQKSVLRS--SSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
VR+K+ L + S+LPGKLADC+ST EE+EI+IVEGDSAGGSAKQ RD
Sbjct: 384 RAAEAARKARELVRRKTSLFTGRSTLPGKLADCTSTNREETEIYIVEGDSAGGSAKQARD 443
Query: 356 RRFQAILPLRGKILNVERKDEA--AMYKNEEIQNLIRALG----LGVKGEDFKKEALRYH 409
RRFQAILPL+GKILNVER +A MYKN EI NLI ALG +GV+ + L Y
Sbjct: 444 RRFQAILPLKGKILNVERLTDANELMYKNTEISNLI-ALGYERTVGVRSRCHAFKLLLYG 502
Query: 410 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 469
KI++LTDADVDGAHIRTLLLTF +R++ LF G +YV VPPLYKVERGK V + + DAE
Sbjct: 503 KIVVLTDADVDGAHIRTLLLTFLFRHRPQLFAAGRVYVAVPPLYKVERGKSVWWAHSDAE 562
Query: 470 LKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 528
L + S + YS+QRFKGLGEMMP QLW+TTLNPE R+L++L + D +EA+ + +
Sbjct: 563 LAALVSEQRLAPGGYSVQRFKGLGEMMPQQLWDTTLNPESRLLRRLTVRDVSEADSMLTM 622
Query: 529 LMGARVDTRKELIQNAANLVNLDHLDI 555
LMG +V+ RK LI+ + ++LD LD+
Sbjct: 623 LMGTKVEPRKALIEAYSRRLSLDALDV 649
>TIGR_CMR|CHY_2705 [details] [associations]
symbol:CHY_2705 "DNA gyrase, B subunit" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075156 RefSeq:YP_361487.1
ProteinModelPortal:Q3A8P7 SMR:Q3A8P7 STRING:Q3A8P7 GeneID:3726578
KEGG:chy:CHY_2705 PATRIC:21278431
BioCyc:CHYD246194:GJCN-2703-MONOMER Uniprot:Q3A8P7
Length = 635
Score = 1263 (449.7 bits), Expect = 1.1e-128, P = 1.1e-128
Identities = 254/519 (48%), Positives = 357/519 (68%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALSE LEV + RDG Y+QK+SRG+P+T L + GT I F PD ++F T
Sbjct: 128 NALSEWLEVRIKRDGNLYYQKFSRGEPITELKI----IGKSKSTGTIITFKPDAEIFET- 182
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
++F+++T+A R+ EL++LN + I L+ E + K + E+ +GG+++Y+++LN +K+P
Sbjct: 183 VEFNYDTLAKRLLELSYLNKNVKIILKDERIN--KEEIFEH--SGGIKDYLKYLNKNKEP 238
Query: 154 LHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNS 213
LH ++ F K+ D + +++ALQ+C+ ++S+ +L + N+I T +GGTH G K +LTR +N
Sbjct: 239 LHKIIYFEKEKDEVVVEVALQYCN-SFSENILSFTNNINTTEGGTHEIGFKTALTRVIND 297
Query: 214 LGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQE 273
KK +K+ ++SL GE +REGLT IISV+VP+P+FEGQTKT+L N EVR +VD V +
Sbjct: 298 YAKKYNLIKENNLSLQGEDIREGLTAIISVKVPDPQFEGQTKTKLVNTEVRSIVDSIVSD 357
Query: 274 YLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTP 333
YL+ YLE +P V R+K+ L S++LPGKLADCS P
Sbjct: 358 YLSTYLEENPAVGKKLIENAIRAARAREAARKARELARRKTALESNTLPGKLADCSEKDP 417
Query: 334 EESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALG 393
E+++VEGDSAGGSAKQGRDRRFQAILPLRGKILNVE+ + NEEI+ +I ALG
Sbjct: 418 SLCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKILANEEIRAMITALG 477
Query: 394 LGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLY 453
GV +DF E RYH++II+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLY
Sbjct: 478 TGVD-KDFDIEKARYHRLIIMTDADVDGAHIRTLLLTFFYRYLRPLIENGYVYIAQPPLY 536
Query: 454 KVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQ 513
KV++GK +Y Y D EL++ + + +IQR+KGLGEM P QLWETT+NPE R + +
Sbjct: 537 KVKKGKLEKYLYSDDELERYLNEIGREGV-TIQRYKGLGEMDPEQLWETTMNPETRTILK 595
Query: 514 LVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV-NLD 551
+ +EDAA+A+ +F+ LMG +V+ R+E I+ A LV NLD
Sbjct: 596 VTLEDAAKADEIFTILMGDKVEPRREFIEKNAKLVRNLD 634
>UNIPROTKB|P05652 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224308 "Bacillus
subtilis subsp. subtilis str. 168" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
EMBL:D26185 EMBL:X02369 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 ProtClustDB:PRK05644 PIR:E22930 RefSeq:NP_387887.1
ProteinModelPortal:P05652 SMR:P05652 PRIDE:P05652
EnsemblBacteria:EBBACT00000000768 GeneID:939456 KEGG:bsu:BSU00060
PATRIC:18971459 GenoList:BSU00060 HOGENOM:HOG000075156 OMA:MDRILAN
BioCyc:BSUB:BSU00060-MONOMER BindingDB:P05652 ChEMBL:CHEMBL4324
Uniprot:P05652
Length = 638
Score = 1228 (437.3 bits), Expect = 5.5e-125, P = 5.5e-125
Identities = 248/553 (44%), Positives = 344/553 (62%)
Query: 1 MIVTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHA NALS L+VTV RDG + Q Y RG P
Sbjct: 95 VIMTVLHAGGKFDGSGYKVSGGLHGVGASVV--NALSTELDVTVHRDGKIHRQTYKRGVP 152
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
VT L + D GT F PD ++F+ ++D++ +A R+RELAFL + I +
Sbjct: 153 VTDLEI----IGETDHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITI- 207
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITIDLALQWCSDA 179
ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+++ALQ+ +D+
Sbjct: 208 -EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQY-NDS 265
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
Y+ + + N+I T +GGTH G K LTR +N +K +K+ D +LSG+ VREGLT
Sbjct: 266 YTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTA 325
Query: 240 IISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXX 299
IIS++ P+P+FEGQTKT+LGN E R + D + ++ +PD
Sbjct: 326 IISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARA 385
Query: 300 XXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQ 359
R+KS L S+LPGKLADCSS P SE++IVEGDSAGGSAKQGRDR FQ
Sbjct: 386 RMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQ 445
Query: 360 AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADV 419
AILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYHK++I+TDADV
Sbjct: 446 AILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYHKVVIMTDADV 504
Query: 420 DGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 479
DGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D EL+++ + P
Sbjct: 505 DGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKELEELLKTLPQ 564
Query: 480 NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE 539
+QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F LMG +V+ R+
Sbjct: 565 TPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEMLMGDKVEPRRN 624
Query: 540 LIQ-NAANLVNLD 551
I+ NA + NLD
Sbjct: 625 FIEANARYVKNLD 637
>TIGR_CMR|BA_0005 [details] [associations]
symbol:BA_0005 "DNA gyrase, B subunit" species:198094
"Bacillus anthracis str. Ames" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF EMBL:AF090333
RefSeq:NP_842577.1 RefSeq:YP_016608.1 RefSeq:YP_026296.1
ProteinModelPortal:Q9X3Y6 PRIDE:Q9X3Y6 DNASU:1083919
EnsemblBacteria:EBBACT00000010328 EnsemblBacteria:EBBACT00000015641
EnsemblBacteria:EBBACT00000021045 GeneID:1083919 GeneID:2816408
GeneID:2848886 KEGG:ban:BA_0005 KEGG:bar:GBAA_0005 KEGG:bat:BAS0005
ProtClustDB:PRK05644 BioCyc:BANT260799:GJAJ-5-MONOMER
BioCyc:BANT261594:GJ7F-5-MONOMER Uniprot:Q9X3Y6
Length = 640
Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
Identities = 250/522 (47%), Positives = 342/522 (65%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF--T 91
NALS LEV V R+G ++QKY RG PV L + D+ GT RF PD ++F T
Sbjct: 129 NALSTELEVFVHREGKIHYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQET 184
Query: 92 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 151
T +FD T+A R+RELAFLN + + + ED K Q E+ + GG++ YV+ LN K
Sbjct: 185 TVYEFD--TLATRMRELAFLNRNIKLTI--EDKREHK-QKKEFHYEGGIKSYVEHLNRSK 239
Query: 152 KPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 210
+P+H+ V DGI ++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR
Sbjct: 240 QPIHEEPVYVEGSKDGIQVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRV 298
Query: 211 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 270
+N G+K+ +KD D +L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + +
Sbjct: 299 INDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESV 358
Query: 271 VQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSS 330
E ++L +P+V R+KS L SSLPGKLADCSS
Sbjct: 359 FSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSS 418
Query: 331 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 390
P SEI+IVEGDSAGGSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I
Sbjct: 419 KDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIIT 478
Query: 391 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 450
A+G + G DF E RYHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ P
Sbjct: 479 AIGTNIGG-DFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQP 537
Query: 451 PLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRM 510
PL+KV++GK++QY Y++ EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R
Sbjct: 538 PLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRS 597
Query: 511 LKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 551
L Q+ ++DA EA+ F LMG +V+ R+ IQ NA + NLD
Sbjct: 598 LLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 639
>UNIPROTKB|P77993 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243274
"Thermotoga maritima MSB8" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:AE000512 GenomeReviews:AE000512_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644 EMBL:U49692
PIR:JC4960 RefSeq:NP_228642.1 ProteinModelPortal:P77993 SMR:P77993
DNASU:898504 GeneID:898504 KEGG:tma:TM0833 PATRIC:23936592
Uniprot:P77993
Length = 636
Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
Identities = 250/531 (47%), Positives = 351/531 (66%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALSE LEV V RDG Y Q+Y RGKPVT + + D+ GT +RF PD +F+
Sbjct: 122 NALSEWLEVRVHRDGKIYRQRYERGKPVTPVEV----IGETDKHGTIVRFKPDPLIFSET 177
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDS-DPEKNQYNEYFFAGGLEEYVQWLNTDKK 152
+FD + + R+RE+AFL P L I ED + EK + F GG+ EYV++LN KK
Sbjct: 178 -EFDPDILEHRLREIAFLVPGLKIEF--EDRINGEKKTFK---FDGGIVEYVKYLNRGKK 231
Query: 153 PLHDVVGFRKDV--------DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 204
LHDV+ ++ D + +++A Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K
Sbjct: 232 ALHDVIHIKRTEKVKTKNGEDEVIVEIAFQY-TDSYSEDIVSFANTIKTVDGGTHVTAFK 290
Query: 205 ASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 264
++LTR +N GKK +K KD S GE VREGLT +ISV V NPEFEGQTK++LGN EV+
Sbjct: 291 STLTRLMNEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVK 349
Query: 265 KVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGK 324
+ V ++++E L + + +P++ VR+K+VL++++LPGK
Sbjct: 350 EAVTKAMREELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGK 409
Query: 325 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEE 384
LADCSST E++E+FIVEGDSAGGSAKQ RDR FQA+LP+RGKILNVE+ + KNE+
Sbjct: 410 LADCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQ 469
Query: 385 IQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGC 444
I ++I A+G G+ G+DF + LRY +III+TDAD+DGAHIRTLLLT FYRY + L ++G
Sbjct: 470 ISDIIVAVGTGI-GDDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGR 528
Query: 445 IYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTL 504
+Y+ +PPLY+++ G++ Y Y D EL + K + IQR+KGLGEM P QLWETT+
Sbjct: 529 VYIALPPLYRIKAGREEFYVYSDQELAEYKEKLQGKRI-EIQRYKGLGEMNPEQLWETTM 587
Query: 505 NPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 555
NPE R + ++ IEDA EA+ +F LMG +R+E I+ A + + LDI
Sbjct: 588 NPETRKIIRVTIEDAEEADRLFEILMGNDPSSRREFIERHA--LKVKELDI 636
>UNIPROTKB|Q8TQG0 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:188937
"Methanosarcina acetivorans C2A" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE010299
GenomeReviews:AE010299_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644
RefSeq:NP_616517.1 HSSP:P06982 ProteinModelPortal:Q8TQG0
GeneID:1473472 KEGG:mac:MA1584 BioCyc:MACE188937:GI2O-1646-MONOMER
Uniprot:Q8TQG0
Length = 634
Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
Identities = 252/520 (48%), Positives = 338/520 (65%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALSE L V V RDG +Y Q+Y RGKP V + + GT+ F PD ++F T
Sbjct: 125 NALSEWLNVEVERDGKKYFQRYIRGKP----EAEVQETGTSEITGTKTTFKPDARIFETT 180
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
F ++ ++ R+RELAFLN LTI L K+ PE Q + ++GG+ E+V++LN K+P
Sbjct: 181 -DFQYDILSNRLRELAFLNRGLTINL-KDLRSPE-GQAETFIYSGGIVEFVEYLNKKKQP 237
Query: 154 LHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 212
LH+ + F + D + +++A+Q+ +++Y++ + +AN+I T +GGTHI G K +LTR N
Sbjct: 238 LHEKPIYFERQRDDMVVEIAMQY-TNSYTENVYSFANNINTHEGGTHIIGFKTALTRVAN 296
Query: 213 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 272
K +K K+ D L+G+ VREGLT IISV++ P+FEGQTKTRLGN EV+ +VD V
Sbjct: 297 DYIKANKLSKE-DAKLTGDDVREGLTAIISVKLMEPQFEGQTKTRLGNSEVKGIVDSLVT 355
Query: 273 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 332
+ L EY E +P V R+KS L S+LPGKLADCS
Sbjct: 356 DGLAEYFEENPKVANVILEKALLAQKAREAAKKARELTRRKSALEVSTLPGKLADCSEKD 415
Query: 333 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 392
P EI+IVEG+SAGGSAKQGRDR FQAILPLRGKILNVE+ A + KN E+ +LI AL
Sbjct: 416 PSVCEIYIVEGNSAGGSAKQGRDRGFQAILPLRGKILNVEKSRLAKILKNNEVVSLITAL 475
Query: 393 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 452
G GV EDF E+ RYHK+I++TDADVDGAHIRTLLLT F+RY + L D G +Y+ PPL
Sbjct: 476 GTGVS-EDFALESARYHKVILMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYVYIAQPPL 534
Query: 453 YKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLK 512
Y++++GK Y + D EL+ K L +IQR+KGLGEM P QLWETT+NPE R L
Sbjct: 535 YRIKKGKSEYYIHSDRELEVKKKELGEKGL-AIQRYKGLGEMNPEQLWETTMNPESRTLL 593
Query: 513 QLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 551
Q+ +EDA A+ +F LMG V+ R+ I+ +A +V+LD
Sbjct: 594 QVTLEDALRADEIFRVLMGDEVEPRRNFIETHAKEVVDLD 633
>UNIPROTKB|Q8A277 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075154 HSSP:P06982
RefSeq:NP_812341.1 ProteinModelPortal:Q8A277 GeneID:1074051
KEGG:bth:BT_3429 PATRIC:21061865
BioCyc:BTHE226186:GJXV-3494-MONOMER Uniprot:Q8A277
Length = 653
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 235/529 (44%), Positives = 339/529 (64%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS + V+R+G Y Q+Y GKP+ + V V D GTR +FWPD +FT
Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYEIGKPLYS----VKEVGVSDITGTRQQFWPDDTIFTET 186
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIAL--RKEDSDPEKNQYNEYFFAG-GLEEYVQWLNTD 150
+ +D+ +A R+RELA+LN L I+L R+ ++ + + +E F++ GL E+V+++ +
Sbjct: 187 V-YDYKILASRLRELAYLNAGLRISLTDRRVVNEEDGSFKSEVFYSEEGLREFVRFIESS 245
Query: 151 KKPL-HDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 209
++ L +DV+ + GI I++A+ + + +S+ + Y N+I TI+GGTH+ G + +LTR
Sbjct: 246 REHLINDVIYLNSEKQGIPIEIAIMY-NTGFSENVHSYVNNINTIEGGTHLAGFRRALTR 304
Query: 210 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 269
TL + SK ++ + +SG+ REGLT +ISV+V P+FEGQTKT+LGN EV VDQ
Sbjct: 305 TLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQ 364
Query: 270 SVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCS 329
+V E L YLE HP V++KS + LPGKLADCS
Sbjct: 365 AVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCS 424
Query: 330 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 389
P + E+F+VEGDSAGG+AKQGR+R FQAILPLRGKILNVE+ +++EI+N+
Sbjct: 425 DKDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIY 484
Query: 390 RALGLGVKGEDFKKEA----LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCI 445
ALG+ + ED KEA LRYHKIII+TDADVDG+HI TL++TFF+RY + G +
Sbjct: 485 TALGVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYL 544
Query: 446 YVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS---NALYSIQRFKGLGEMMPVQLWET 502
Y+ PPLY ++GK +YC+ DA+ +K ++ NA+++ QR+KGLGEM QLWET
Sbjct: 545 YIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGLENAVHT-QRYKGLGEMNAQQLWET 603
Query: 503 TLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 551
T++P+ RMLKQ+ I++AAEA+ +FS LMG V R+E I+ A N+D
Sbjct: 604 TMDPDNRMLKQVNIDNAAEADYIFSMLMGEDVGPRREFIEENATYANID 652
>UNIPROTKB|Q8FA30 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644 EMBL:AE010300
GenomeReviews:AE010300_GR HSSP:P06982 RefSeq:NP_710186.1
ProteinModelPortal:Q8FA30 GeneID:1149348 KEGG:lil:LA_0005
PATRIC:22380849 BioCyc:LINT189518:GJBB-5-MONOMER Uniprot:Q8FA30
Length = 639
Score = 1121 (399.7 bits), Expect = 1.2e-113, P = 1.2e-113
Identities = 226/520 (43%), Positives = 329/520 (63%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALSE LEV V + G Y QKY +G PV+++ + DS +R GT +RF PD +FTT
Sbjct: 126 NALSEYLEVEVHQKGKVYTQKYEKGVPVSSVQ---IQGDSSER-GTIVRFKPDATIFTT- 180
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
+ F + ++ R RELAFLN L + + E NE+ F+GG+ +V+ +N +K P
Sbjct: 181 VDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNEFQFSGGIVSFVEHINENKHP 240
Query: 154 LHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNS 213
+H V+ F ++ D + ++++Q+ S+ Y++ + + N+I GGTH+EG +A+LTRTLN
Sbjct: 241 MHKVIHFERNKDDVLAEISIQY-SETYTENIFCFTNNINNNLGGTHLEGFRAALTRTLND 299
Query: 214 LGKKSKTVKDKD-ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 272
KK T+ K LSGE V+EGLT +IS+++P P+F QTK +L N E++ ++
Sbjct: 300 FLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQTLSS 359
Query: 273 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 332
E LT + E +P++ R+K+VL LPGKLADCS
Sbjct: 360 EGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADCSEKD 419
Query: 333 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 392
P SE+++VEGDSAGGSAKQGRDR QAILPL+GKILNVE+ + +EEI+ L+ AL
Sbjct: 420 PAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRVLVSAL 479
Query: 393 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 452
G G+ ++F + +RYHKI+I+TDAD+DG+HIRTLLLTFF+RY + + + G +YV PPL
Sbjct: 480 GTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYLYVAQPPL 539
Query: 453 YKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLK 512
Y ++ GK Y Y D E +++ + + + IQR+KGLGEM P QLWETT++P R++
Sbjct: 540 YLIKHGKNSTYVYSDKEKEELLKNIGAEKVV-IQRYKGLGEMNPEQLWETTMDPSNRVVL 598
Query: 513 QLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 551
++ ++D EA F+ LMG V RK+ I+ NAA + NLD
Sbjct: 599 KVKLDDFVEAEETFNVLMGDEVQPRKQFIEVNAAKVANLD 638
>UNIPROTKB|Q74H89 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 HSSP:P06982 RefSeq:NP_951065.1
ProteinModelPortal:Q74H89 SMR:Q74H89 GeneID:2686080
KEGG:gsu:GSU0003 PATRIC:22022743 BioCyc:GSUL243231:GH27-3-MONOMER
Uniprot:Q74H89
Length = 795
Score = 939 (335.6 bits), Expect = 1.6e-113, Sum P(2) = 1.6e-113
Identities = 190/439 (43%), Positives = 285/439 (64%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS LE+ + RDG Y Q Y+ G P T L V+ ++K R GT+I F PD +F T
Sbjct: 127 NALSRKLELEIRRDGKVYRQSYACGDPQTPL--EVMG-ETKKR-GTKITFLPDDTIFETT 182
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
+F + ++ R+RELAFLN + I + E E+ +++++ + GG+ +V++LN ++
Sbjct: 183 -EFSFDVLSQRLRELAFLNAGVRITITDER---EEGKHHDFHYEGGIVSFVEYLNRNRTA 238
Query: 154 LHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 212
LH + F+ + G+ +++ALQ+ +D+Y + + +AN+I T +GGTH+ G +A+LTRT+N
Sbjct: 239 LHPKPIYFKGEKAGVEMEVALQY-NDSYDEKVFSFANNINTHEGGTHLVGFRAALTRTMN 297
Query: 213 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 272
+ ++ +K + +++SGE +REGLT +ISV++P P+FEGQTKT+LGN EV+ V+ +
Sbjct: 298 TYAAANELLKKEKVAISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGYVESLMN 357
Query: 273 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 332
E L +LE +P + R+K L S+LPGKLADC
Sbjct: 358 EKLAVFLEENPKIAKDIIGKSIEAARAREAARKARELTRRKGALDISNLPGKLADCQERD 417
Query: 333 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 392
P E+++VEGDSAGGSAKQGRDR+FQAILPL+GKILNVE+ M ++EI LI AL
Sbjct: 418 PALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLITAL 477
Query: 393 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 452
G G+ +DF LRYH+II++TDADVDG+HI TLLLTFF+R + + G +Y+ PPL
Sbjct: 478 GTGIGKDDFDIAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQPPL 537
Query: 453 YKVERGKQVQYCYDDAELK 471
YKV+RG++ Y ++A ++
Sbjct: 538 YKVKRGRKELYLRNEAAMQ 556
Score = 201 (75.8 bits), Expect = 1.6e-113, Sum P(2) = 1.6e-113
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 484 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-Q 542
SIQR+KGLGEM P QLWETT+ P R L Q+ IEDA EA+ +F+ LMG +V+ R++ I Q
Sbjct: 726 SIQRYKGLGEMNPEQLWETTMEPVNRTLLQVKIEDAIEADTIFTILMGDQVEPRRDFIEQ 785
Query: 543 NAANLVNLD 551
NA N+ NLD
Sbjct: 786 NALNVSNLD 794
Score = 38 (18.4 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 233 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEY 278
V EGL +VR + G T + + V ++VD S+ E L Y
Sbjct: 16 VLEGLE---AVRKRPAMYIGSTAAQGLHHLVYEIVDNSIDEALAGY 58
>TIGR_CMR|GSU_0003 [details] [associations]
symbol:GSU_0003 "DNA gyrase, B subunit" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939 HSSP:P06982
RefSeq:NP_951065.1 ProteinModelPortal:Q74H89 SMR:Q74H89
GeneID:2686080 KEGG:gsu:GSU0003 PATRIC:22022743
BioCyc:GSUL243231:GH27-3-MONOMER Uniprot:Q74H89
Length = 795
Score = 939 (335.6 bits), Expect = 1.6e-113, Sum P(2) = 1.6e-113
Identities = 190/439 (43%), Positives = 285/439 (64%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS LE+ + RDG Y Q Y+ G P T L V+ ++K R GT+I F PD +F T
Sbjct: 127 NALSRKLELEIRRDGKVYRQSYACGDPQTPL--EVMG-ETKKR-GTKITFLPDDTIFETT 182
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
+F + ++ R+RELAFLN + I + E E+ +++++ + GG+ +V++LN ++
Sbjct: 183 -EFSFDVLSQRLRELAFLNAGVRITITDER---EEGKHHDFHYEGGIVSFVEYLNRNRTA 238
Query: 154 LHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 212
LH + F+ + G+ +++ALQ+ +D+Y + + +AN+I T +GGTH+ G +A+LTRT+N
Sbjct: 239 LHPKPIYFKGEKAGVEMEVALQY-NDSYDEKVFSFANNINTHEGGTHLVGFRAALTRTMN 297
Query: 213 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 272
+ ++ +K + +++SGE +REGLT +ISV++P P+FEGQTKT+LGN EV+ V+ +
Sbjct: 298 TYAAANELLKKEKVAISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGYVESLMN 357
Query: 273 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 332
E L +LE +P + R+K L S+LPGKLADC
Sbjct: 358 EKLAVFLEENPKIAKDIIGKSIEAARAREAARKARELTRRKGALDISNLPGKLADCQERD 417
Query: 333 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 392
P E+++VEGDSAGGSAKQGRDR+FQAILPL+GKILNVE+ M ++EI LI AL
Sbjct: 418 PALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLITAL 477
Query: 393 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 452
G G+ +DF LRYH+II++TDADVDG+HI TLLLTFF+R + + G +Y+ PPL
Sbjct: 478 GTGIGKDDFDIAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQPPL 537
Query: 453 YKVERGKQVQYCYDDAELK 471
YKV+RG++ Y ++A ++
Sbjct: 538 YKVKRGRKELYLRNEAAMQ 556
Score = 201 (75.8 bits), Expect = 1.6e-113, Sum P(2) = 1.6e-113
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 484 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-Q 542
SIQR+KGLGEM P QLWETT+ P R L Q+ IEDA EA+ +F+ LMG +V+ R++ I Q
Sbjct: 726 SIQRYKGLGEMNPEQLWETTMEPVNRTLLQVKIEDAIEADTIFTILMGDQVEPRRDFIEQ 785
Query: 543 NAANLVNLD 551
NA N+ NLD
Sbjct: 786 NALNVSNLD 794
Score = 38 (18.4 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 233 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEY 278
V EGL +VR + G T + + V ++VD S+ E L Y
Sbjct: 16 VLEGLE---AVRKRPAMYIGSTAAQGLHHLVYEIVDNSIDEALAGY 58
>UNIPROTKB|Q3KMH2 [details] [associations]
symbol:gyrB_1 "DNA gyrase subunit B" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_327998.1 ProteinModelPortal:Q3KMH2
STRING:Q3KMH2 GeneID:3687234 KEGG:cta:CTA_0208 PATRIC:32022282
BioCyc:CTRA315277:GI4C-250-MONOMER Uniprot:Q3KMH2
Length = 804
Score = 943 (337.0 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
Identities = 199/443 (44%), Positives = 276/443 (62%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALSE V++DG Y ++SRG P+TTL VL D++GT + F+PD +F+T
Sbjct: 132 NALSEKFIAKVFKDGQAYSMEFSRGAPLTTL--QVL--GPTDKRGTEVLFYPDPAIFSTC 187
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK- 152
+ FD + R+RELAFLN +TI ++D D ++ +F+ GG++ +V +LN +K+
Sbjct: 188 V-FDRAILMKRLRELAFLNRGVTIVF-EDDRDTGFDKV-VFFYEGGIQSFVSYLNQNKEI 244
Query: 153 ----PLHDVVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 207
P++ + G R DG I + ALQW S YS+ + YAN+I T GGTH+ G +L
Sbjct: 245 LFPNPIY-MQGSRPGDDGDIEFEAALQWNS-GYSELIYSYANNIPTRQGGTHLTGFSTAL 302
Query: 208 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 267
TR +NS K K +SL+GE ++EGL I+SV+VPNP+FEGQTK +LGN +V V
Sbjct: 303 TRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVGSVS 362
Query: 268 DQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLAD 327
Q E LT + E +P + +KS L S+ LPGKL D
Sbjct: 363 QQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSARLPGKLID 422
Query: 328 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 387
C PE+ E++IVEGDSAGGSAKQGRDRRFQAILP+RGKILNVE+ +++N+EI +
Sbjct: 423 CLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQEIGS 482
Query: 388 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 447
+I ALG G+ ++F LRY +III+TDADVDG+HIRTLLLTFFYR+ L + C+Y+
Sbjct: 483 IIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENECVYI 542
Query: 448 GVPPLYKVERGKQVQYCYDDAEL 470
PPLY+V + K +Y + E+
Sbjct: 543 AQPPLYRVSKKKDFRYILSEKEM 565
Score = 187 (70.9 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
Identities = 36/71 (50%), Positives = 53/71 (74%)
Query: 485 IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNA 544
IQR+KGLGEM QLW+TT+NPEQR L ++ ++DA EA+ +F+ LMG V R+E I++
Sbjct: 734 IQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAVEADHIFTMLMGEEVPPRREFIESH 793
Query: 545 ANLVNLDHLDI 555
A + +++LDI
Sbjct: 794 ALSIRMNNLDI 804
Score = 41 (19.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 366 GKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 404
G L+ + EAA+ NEE + I L G E+ +++
Sbjct: 643 GSYLHSHEEKEAAIAANEESASRILELYKGSVLEELQRD 681
>TIGR_CMR|DET_0004 [details] [associations]
symbol:DET_0004 "DNA gyrase, B subunit" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000027
GenomeReviews:CP000027_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644
RefSeq:YP_180759.1 ProteinModelPortal:Q3ZAJ0 STRING:Q3ZAJ0
GeneID:3229139 KEGG:det:DET0004 PATRIC:21607113
BioCyc:DETH243164:GJNF-4-MONOMER Uniprot:Q3ZAJ0
Length = 642
Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
Identities = 233/520 (44%), Positives = 325/520 (62%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NAL+E V V R+G Y Q Y RGKP T L V D GT F D Q+F+T
Sbjct: 134 NALAEWTTVKVRRNGKIYQQSYQRGKPSTPLE----EVGVSDGSGTTTIFKADSQIFSTT 189
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
++D T+ R+RE+A+LN L + + E SD E+ Y+F GG+ +V+ LN +++
Sbjct: 190 -EYDFETLTDRLREIAYLNKGLEVYIYDEQSDQERT----YYFEGGITGFVRHLNRNREV 244
Query: 154 LH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 212
H + K D +++A+Q+ +D YSD+ L +AN + TIDGGTH+ G +++LTR N
Sbjct: 245 RHRQPIYITKKSDSTILEVAIQY-NDGYSDSTLTFANCVNTIDGGTHLTGFRSALTRAFN 303
Query: 213 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 272
KSK +KD D +L G+ VREG+ I+SV++P P+FEGQTK +LGN E++ V+ +V
Sbjct: 304 DYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESAVT 363
Query: 273 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 332
E L+ YLE HPD + +KS L + +LPGKLADCS
Sbjct: 364 EQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSERD 423
Query: 333 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 392
E+F+VEGDSAGGSAKQGR+RRFQAILPLRGKILNVE+ M +EEI+ +I AL
Sbjct: 424 ASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDKMLAHEEIRAIITAL 483
Query: 393 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 452
G+ DF LRY++++++TDADVDG+HIRTLLLTFF+R+ L E +++ PPL
Sbjct: 484 AAGIDN-DFDPAKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRLITESHLFIAQPPL 542
Query: 453 YKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLK 512
YK++ G + Y+DAE + + S SN + IQR+KGLGEM QLW+TT++P R L
Sbjct: 543 YKIKIGSNEHWVYNDAEKETLLSQTKSNKV-DIQRYKGLGEMSAEQLWKTTMDPASRTLL 601
Query: 513 QLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV-NLD 551
++ +EDAA+A+ +F+ LMG V RK IQ+ + V NLD
Sbjct: 602 EVKVEDAAKADQIFNLLMGGEVAPRKAFIQSHSKTVKNLD 641
>UNIPROTKB|Q9KVX3 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF
ProtClustDB:PRK14939 PIR:H82376 RefSeq:NP_062599.1
ProteinModelPortal:Q9KVX3 SMR:Q9KVX3 PRIDE:Q9KVX3 DNASU:2615137
GeneID:2615137 KEGG:vch:VC0015 PATRIC:20079078 Uniprot:Q9KVX3
Length = 805
Score = 920 (328.9 bits), Expect = 1.9e-110, Sum P(2) = 1.9e-110
Identities = 188/441 (42%), Positives = 272/441 (61%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALSE + +T++R G + Q Y G P L V +R GT +RFWP Q FT
Sbjct: 124 NALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAV----VGETERTGTTVRFWPSAQTFTN- 178
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
I+F ++ +A R+REL+FLN ++I L E + +K+ + + GG++ +V LN +K P
Sbjct: 179 IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHF---MYEGGIQAFVTHLNRNKTP 235
Query: 154 LHD-VVGFRKD-VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 211
+H+ V F ++ DGI++++A+QW +D + + + + N+I DGGTH+ G + +LTRTL
Sbjct: 236 IHEKVFHFNQEREDGISVEVAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTL 294
Query: 212 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 271
N+ K K + SG+ REGLT ++SV+VP+P+F QTK +L + EV+ V+ ++
Sbjct: 295 NNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAM 354
Query: 272 QEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSST 331
E L ++L +P R+K L + LPGKLADC
Sbjct: 355 NEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEK 414
Query: 332 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 391
P SE++IVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ M ++E+ LI A
Sbjct: 415 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 474
Query: 392 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 451
LG G+ +++ + LRYH III+TDADVDG+HIRTLLLTFFYR L + G IY+ PP
Sbjct: 475 LGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPP 534
Query: 452 LYKVERGKQVQYCYDDAELKK 472
LYKV++GKQ QY D+ + +
Sbjct: 535 LYKVKKGKQEQYIKDEEAMNQ 555
Score = 191 (72.3 bits), Expect = 1.9e-110, Sum P(2) = 1.9e-110
Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 484 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ- 542
SIQR+KGLGEM P QLWETT++PE R + Q+ IEDA A+ +F++LMG +V+ R+ I+
Sbjct: 736 SIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIET 795
Query: 543 NAANLVNLD 551
NA + NLD
Sbjct: 796 NALKVANLD 804
>TIGR_CMR|VC_0015 [details] [associations]
symbol:VC_0015 "DNA gyrase, subunit B" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880
OMA:IFETTEF ProtClustDB:PRK14939 PIR:H82376 RefSeq:NP_062599.1
ProteinModelPortal:Q9KVX3 SMR:Q9KVX3 PRIDE:Q9KVX3 DNASU:2615137
GeneID:2615137 KEGG:vch:VC0015 PATRIC:20079078 Uniprot:Q9KVX3
Length = 805
Score = 920 (328.9 bits), Expect = 1.9e-110, Sum P(2) = 1.9e-110
Identities = 188/441 (42%), Positives = 272/441 (61%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALSE + +T++R G + Q Y G P L V +R GT +RFWP Q FT
Sbjct: 124 NALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAV----VGETERTGTTVRFWPSAQTFTN- 178
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
I+F ++ +A R+REL+FLN ++I L E + +K+ + + GG++ +V LN +K P
Sbjct: 179 IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHF---MYEGGIQAFVTHLNRNKTP 235
Query: 154 LHD-VVGFRKD-VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 211
+H+ V F ++ DGI++++A+QW +D + + + + N+I DGGTH+ G + +LTRTL
Sbjct: 236 IHEKVFHFNQEREDGISVEVAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTL 294
Query: 212 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 271
N+ K K + SG+ REGLT ++SV+VP+P+F QTK +L + EV+ V+ ++
Sbjct: 295 NNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAM 354
Query: 272 QEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSST 331
E L ++L +P R+K L + LPGKLADC
Sbjct: 355 NEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEK 414
Query: 332 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 391
P SE++IVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ M ++E+ LI A
Sbjct: 415 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 474
Query: 392 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 451
LG G+ +++ + LRYH III+TDADVDG+HIRTLLLTFFYR L + G IY+ PP
Sbjct: 475 LGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPP 534
Query: 452 LYKVERGKQVQYCYDDAELKK 472
LYKV++GKQ QY D+ + +
Sbjct: 535 LYKVKKGKQEQYIKDEEAMNQ 555
Score = 191 (72.3 bits), Expect = 1.9e-110, Sum P(2) = 1.9e-110
Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 484 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ- 542
SIQR+KGLGEM P QLWETT++PE R + Q+ IEDA A+ +F++LMG +V+ R+ I+
Sbjct: 736 SIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIET 795
Query: 543 NAANLVNLD 551
NA + NLD
Sbjct: 796 NALKVANLD 804
>TIGR_CMR|SO_0011 [details] [associations]
symbol:SO_0011 "DNA gyrase, B subunit" species:211586
"Shewanella oneidensis MR-1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 HSSP:P06982 RefSeq:NP_715653.1
ProteinModelPortal:Q8EKS9 SMR:Q8EKS9 GeneID:1167909
KEGG:son:SO_0011 PATRIC:23519713 Uniprot:Q8EKS9
Length = 805
Score = 900 (321.9 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
Identities = 191/465 (41%), Positives = 280/465 (60%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS+ L++T+ RDG + Q Y+ G P + + + GT IRFWP +Q F+
Sbjct: 125 NALSKKLQLTIRRDGKVHEQFYTHGVP----DAPIKEIGDATKTGTEIRFWPSEQTFSN- 179
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
++F +A R+REL+FLN + +R D KN++ +Y GG+ +V +LN +K P
Sbjct: 180 VEFHFEILAKRVRELSFLNSG--VGIRLVDERDNKNEFFKY--EGGISAFVDYLNRNKTP 235
Query: 154 LH-DVVGFRKDVD-GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 211
++ DV F ++ D GIT+++A+QW +D Y + + + N+I DGGTH+ G +++LTR L
Sbjct: 236 VNKDVFHFMQERDDGITVEVAMQW-NDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNL 294
Query: 212 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 271
N+ + K + +G+ REGLT +ISV+VP+P+F QTK +L + EV+ V+Q++
Sbjct: 295 NNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTM 354
Query: 272 QEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSST 331
E L +YL +P R+K L LPGKLADC
Sbjct: 355 GEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEK 414
Query: 332 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 391
P SEI+IVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ M ++E+ LI A
Sbjct: 415 DPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 474
Query: 392 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 451
LG G+ +++ + RYH III+TDADVDG+HIRTLLLTFF+R L + G +Y+ PP
Sbjct: 475 LGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPP 534
Query: 452 LYKVERGKQVQYCYDDAELKK--VKSSFPSNALYSIQRFKGL-GE 493
L+KV++GKQ QY D++ L + + ++Y Q G+ GE
Sbjct: 535 LFKVKKGKQEQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGE 579
Score = 208 (78.3 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
Identities = 52/111 (46%), Positives = 69/111 (62%)
Query: 442 EGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWE 501
EG I VG Y V+RG +V+ E S LY IQR+KGLGEM P QLWE
Sbjct: 699 EGLIEVGG---Y-VQRGDRVKEVGSFIEALDWTISEAKRGLY-IQRYKGLGEMNPEQLWE 753
Query: 502 TTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 551
TT++PE R + Q+ I+DA A+ +F+ LMG +V+ R+E I+ NA N+ NLD
Sbjct: 754 TTMDPESRRMLQVTIDDAVGADQLFTCLMGDQVEPRREFIEANALNVANLD 804
>UNIPROTKB|P0AES6 [details] [associations]
symbol:gyrB species:83333 "Escherichia coli K-12"
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA;IMP] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=IDA] [GO:0006265
"DNA topological change" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA;IDA] [GO:0042493 "response to drug"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046677 "response to antibiotic"
evidence=IEA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0042493 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046677
GO:GO:0006351 EMBL:L10328 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009330 GO:GO:0009295 EMBL:X04341
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 PDB:3NUH PDBsum:3NUH
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK14939
EMBL:D87842 EMBL:M15548 PIR:D65172 RefSeq:YP_026241.1
RefSeq:YP_491736.1 PDB:1AJ6 PDB:1EI1 PDB:1KZN PDB:3G7E PDB:4DUH
PDBsum:1AJ6 PDBsum:1EI1 PDBsum:1KZN PDBsum:3G7E PDBsum:4DUH
ProteinModelPortal:P0AES6 SMR:P0AES6 DIP:DIP-48005N IntAct:P0AES6
PaxDb:P0AES6 PRIDE:P0AES6 EnsemblBacteria:EBESCT00000002623
EnsemblBacteria:EBESCT00000017095 GeneID:12930543 GeneID:948211
KEGG:ecj:Y75_p3474 KEGG:eco:b3699 PATRIC:32122895 EchoBASE:EB0419
EcoGene:EG10424 BioCyc:EcoCyc:EG10424-MONOMER
BioCyc:ECOL316407:JW5625-MONOMER BioCyc:MetaCyc:EG10424-MONOMER
BindingDB:P0AES6 ChEMBL:CHEMBL1826 DrugBank:DB00817
EvolutionaryTrace:P0AES6 Genevestigator:P0AES6 Uniprot:P0AES6
Length = 804
Score = 927 (331.4 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
Identities = 185/444 (41%), Positives = 272/444 (61%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS+ LE+ + R+G + Q Y G P L ++ GT +RFWP + FT
Sbjct: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAV----TGETEKTGTMVRFWPSLETFTNV 179
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
+F++ +A R+REL+FLN ++I LR D + + + + GG++ +V++LN +K P
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLR----DKRDGKEDHFHYEGGIKAFVEYLNKNKTP 235
Query: 154 LH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 212
+H ++ F + DGI +++ALQW +D + + + + N+I DGGTH+ G +A++TRTLN
Sbjct: 236 IHPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 294
Query: 213 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 272
+ K K +S +G+ REGL ++SV+VP+P+F QTK +L + EV+ V+Q +
Sbjct: 295 AYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMN 354
Query: 273 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 332
E L EYL +P R+K L + LPGKLADC
Sbjct: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERD 414
Query: 333 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 392
P SE+++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ M ++E+ LI AL
Sbjct: 415 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 474
Query: 393 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 452
G G+ +++ + LRYH III+TDADVDG+HIRTLLLTFFYR + + G +Y+ PPL
Sbjct: 475 GCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPL 534
Query: 453 YKVERGKQVQYCYDDAELKKVKSS 476
YKV++GKQ QY DD + + + S
Sbjct: 535 YKVKKGKQEQYIKDDEAMDQYQIS 558
Score = 179 (68.1 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
Identities = 43/100 (43%), Positives = 64/100 (64%)
Query: 455 VERGKQVQ--YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLK 512
+ERG++ Q ++ A VK S L SIQR+KGLGEM P QLWETT++PE R +
Sbjct: 707 IERGERRQPVASFEQALDWLVKES--RRGL-SIQRYKGLGEMNPEQLWETTMDPESRRML 763
Query: 513 QLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 551
++ ++DA A+ +F++LMG V+ R+ I+ NA N+D
Sbjct: 764 RVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANID 803
>UNIPROTKB|O08399 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243276
"Treponema pallidum subsp. pallidum str. Nichols" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AE000520
GenomeReviews:AE000520_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644
EMBL:U78094 PIR:H71254 RefSeq:NP_219443.1 ProteinModelPortal:O08399
IntAct:O08399 GeneID:2610807 KEGG:tpa:TP1006 PATRIC:20532137
Uniprot:O08399
Length = 637
Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
Identities = 235/529 (44%), Positives = 328/529 (62%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSK---DRQGTRIRFWPDKQVF 90
NALS +EVTV+RDG EY+QK++ G P+ PV+ + +++GT IR+ D +F
Sbjct: 123 NALSLWVEVTVYRDGAEYYQKFNVGMPLA-------PVEKRGVSEKRGTIIRWQADPSIF 175
Query: 91 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 150
+ +D + + R+RELAFLN + I LR E K E+ F GG+ +V +LN
Sbjct: 176 KETVAYDFDVLLTRLRELAFLNSTVVIQLRDERLATAKQV--EFAFEGGIRHFVSYLNRG 233
Query: 151 K-----KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 205
K +PL+ + G + DV +++ALQ+ D Y++ + + N I T +GGTH+EG K+
Sbjct: 234 KSVVPERPLY-IEGSKSDV---LVEVALQY-HDGYTENVQSFVNDINTREGGTHLEGFKS 288
Query: 206 SLTRTLNSLGKKS-KTVK--DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 262
+LTR N KKS K K +++ L GE VR GLT ++SV++P P+FEGQTKT+LGN E
Sbjct: 289 ALTRVANDFLKKSPKLAKKIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSE 348
Query: 263 VRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLP 322
VR +VD V E LT Y E +P V R+KS + S LP
Sbjct: 349 VRGIVDSLVGERLTLYFEQNPGVLTKILEKSIAEAQARLAARRAKEAARRKSGMDSFGLP 408
Query: 323 GKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKN 382
GKLADCS P + E++IVEGDSAGGSAK+GRD + QAILPL GK+LNVE+ + N
Sbjct: 409 GKLADCSLKDPAKCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLHN 468
Query: 383 EEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDE 442
E++Q +I LG GV G+DF +RYHK+II+ DADVDG+HIRTLLLTFF+RY + +
Sbjct: 469 EKLQPIIATLGTGV-GKDFDLTRIRYHKVIIMADADVDGSHIRTLLLTFFFRYLPQIIEA 527
Query: 443 GCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWET 502
G +Y+ +PPLY++ K+ Y Y D E + S + ++QR+KGLGEM QLWET
Sbjct: 528 GYVYLAMPPLYRIAWSKKELYVYSDTERDEALESIGKKSGVAVQRYKGLGEMDGTQLWET 587
Query: 503 TLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 551
T+NP +R + Q+V+ DA EA+ VFS+LMG V+ R++ I+ A LD
Sbjct: 588 TMNPVRRKMMQVVLSDAVEADRVFSTLMGEDVEPRRKFIEENAIYARLD 636
>TIGR_CMR|SPO_0155 [details] [associations]
symbol:SPO_0155 "DNA gyrase, B subunit" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_165427.1 ProteinModelPortal:Q5LWU8
SMR:Q5LWU8 GeneID:3194940 KEGG:sil:SPO0155 PATRIC:23373557
Uniprot:Q5LWU8
Length = 805
Score = 911 (325.7 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 191/438 (43%), Positives = 269/438 (61%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS+ LE+ +WR G E+ ++ RG V L V+ + DR GT +RF F+
Sbjct: 130 NALSDWLELRIWRHGKEHVARFERGDTVEHL--RVVG-ECGDRTGTEVRFLASTTTFSN- 185
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
+ + T+ R+RELAFLN + I L D P + E F+ GG+ E+V++L+ K P
Sbjct: 186 LDYVFETLEKRLRELAFLNSGVRIILI--DERPAERIETELFYEGGVREFVKYLDRSKSP 243
Query: 154 LHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 212
+ + F+ + D I +++A+ W +D+Y +T+L + N+I DGGTH+ G + +LTRT+N
Sbjct: 244 VMPAPIYFKGERDDIGVEIAMWW-NDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTIN 302
Query: 213 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 272
+ + S K + I+ +G+ REGLTC++SV+VP+P+F QTK +L + EVR V+ V
Sbjct: 303 NYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLVN 362
Query: 273 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 332
E L E+ E +P+V R+K+ + + L GKL DCS
Sbjct: 363 EKLAEWFEENPNVAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKD 422
Query: 333 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 392
P ++E+F+VEGDSAGGSA+ GRDRR QA+LPLRGKILNVER M ++EI NL+ AL
Sbjct: 423 PSKTEVFLVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQEIGNLVMAL 482
Query: 393 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 452
G G+ ++F LRYHKI+I+TDADVDGAHIRTLLLTFFYR L + G +Y+ PPL
Sbjct: 483 GTGIGRDEFNISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQPPL 542
Query: 453 YKVERGKQVQYCYDDAEL 470
YKV RGK Y D A L
Sbjct: 543 YKVARGKSEVYLKDQAAL 560
Score = 186 (70.5 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 37/69 (53%), Positives = 51/69 (73%)
Query: 484 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ- 542
++QR+KGLGEM P QLWETTL+P+ R L Q+ + D EA+ +F+ LMG V+ R+E IQ
Sbjct: 736 TLQRYKGLGEMNPEQLWETTLDPDARTLLQVRVNDMVEADDIFTKLMGDSVEPRREFIQQ 795
Query: 543 NAANLVNLD 551
NA ++ NLD
Sbjct: 796 NALSVENLD 804
>TIGR_CMR|CBU_0004 [details] [associations]
symbol:CBU_0004 "DNA gyrase, B subunit" species:227377
"Coxiella burnetii RSA 493" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:NP_819060.2 ProteinModelPortal:Q83FD5
PRIDE:Q83FD5 GeneID:1207924 KEGG:cbu:CBU_0004 PATRIC:17928685
BioCyc:CBUR227377:GJ7S-5-MONOMER Uniprot:Q83FD5
Length = 810
Score = 905 (323.6 bits), Expect = 5.7e-107, Sum P(2) = 5.7e-107
Identities = 189/438 (43%), Positives = 268/438 (61%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALSE L +T+ ++G Y Q Y G P L D+ GT IRF P +F+
Sbjct: 130 NALSEELYMTIRQNGNVYTQTYKMGVPQAPLAV----TGKSDKTGTEIRFKPSNAIFSNT 185
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
+F ++ +A R+RELAFLN + +R E +D + + + + GG++ +V+ LN K P
Sbjct: 186 -EFHYDILAKRLRELAFLN----LGVRIELTDERSGRGDIFEYEGGIKAFVEHLNKKKTP 240
Query: 154 LH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 212
+H DV F + + I +++A+QW +D + +T+ + N+I DGGTH+ G +A+LTRTLN
Sbjct: 241 IHSDVFHFSTEKNDIVVEVAMQW-NDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTLN 299
Query: 213 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 272
+ + K +++SG+ REGLT ++SV+VP+P+F QTK +L + EV+ VV+ +V
Sbjct: 300 NYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTVA 359
Query: 273 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 332
+ L +YL +P R+K+VL LPGKLADC
Sbjct: 360 KQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEKD 419
Query: 333 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 392
P E+F+VEGDSAGGSAKQ RDRR+QAILPL+GKILNVE+ M + E+ LI AL
Sbjct: 420 PALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITAL 479
Query: 393 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 452
G G+ E++ + LRYH+II++TDADVDG+HIRTLLLTFFYR L + G IY+ PPL
Sbjct: 480 GCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPL 539
Query: 453 YKVERGKQVQYCYDDAEL 470
YKV++ KQ QY DD L
Sbjct: 540 YKVKKSKQEQYVKDDLAL 557
Score = 173 (66.0 bits), Expect = 5.7e-107, Sum P(2) = 5.7e-107
Identities = 37/69 (53%), Positives = 50/69 (72%)
Query: 484 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-Q 542
+IQR+KGLGEM P QLWETT++ E R L + IEDA A+ +F++LMG +V+ R+ I Q
Sbjct: 741 NIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVMADEIFTTLMGDQVEPRRLFIEQ 800
Query: 543 NAANLVNLD 551
NA + NLD
Sbjct: 801 NALAVENLD 809
>UNIPROTKB|A9WGP2 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:324602
"Chloroflexus aurantiacus J-10-fl" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:CP000909 GenomeReviews:CP000909_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
OMA:IFETTEF ProtClustDB:PRK05644 HOGENOM:HOG000075154
RefSeq:YP_001636597.1 ProteinModelPortal:A9WGP2 STRING:A9WGP2
GeneID:5827483 KEGG:cau:Caur_3009 PATRIC:21417339
BioCyc:CAUR324602:GIXU-3058-MONOMER Uniprot:A9WGP2
Length = 636
Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
Identities = 218/520 (41%), Positives = 313/520 (60%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS + V V+R+G Y+Q+Y G PVT V+ ++ DR GT RF PD + T
Sbjct: 127 NALSAYMRVDVYRNGRHYYQEYRAGVPVTD----VIDLEPTDRHGTTTRFLPDTSIIQT- 181
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
+ ++ +T+A R RE+++LN L E ++ E N ++F GG+ YV+ LN +K
Sbjct: 182 LDYNFDTLAQRFREMSYLNKGLRFKFVDERTNRELN----FYFEGGIVSYVRHLNKEKTV 237
Query: 154 LHDVVGF-RKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 212
LH + + VD + +++ALQ+ +D + +AN+I DGG+H+ G + +LTR +N
Sbjct: 238 LHRQPFYVERIVDDVMVEVALQYTDSFDTDNVYTFANNINNADGGSHLSGFRTALTRVIN 297
Query: 213 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 272
+ + +KD + +L+G+ VREGLT +ISV++ +P+F QTK +L +PE V
Sbjct: 298 NYARAKGLLKDNESNLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAASAVATVFS 357
Query: 273 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 332
+ + +L+ +P R KS + SLPGKLADCS
Sbjct: 358 DAFSAWLDENPTEARRIIEKAISAARTRLAVQKVRETAR-KSAMEGFSLPGKLADCSDPN 416
Query: 333 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 392
P E++IVEGDSAGG+AKQGRDRRFQAILPLRGKILNVE+ M N E++ LI A+
Sbjct: 417 PARCELYIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKSRLDRMLSNAEVRALITAI 476
Query: 393 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 452
G + G+ F LRYH+I ++TDADVDG+HIRTLLLTFF+R+ + L G +++ PPL
Sbjct: 477 GTSI-GDQFDLSKLRYHRIFLMTDADVDGSHIRTLLLTFFFRHMRPLITNGHLFIAQPPL 535
Query: 453 YKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLK 512
Y+++ G++ Y Y DAE S P IQR+KGLGEM QLWETT+NP+ R++
Sbjct: 536 YRIKHGREQVYTYSDAERDAYLSKLPPGTKVEIQRYKGLGEMNAEQLWETTMNPQNRVIL 595
Query: 513 QLVIEDAAEANVVFSSLMGARVDTRKELIQNAAN-LVNLD 551
Q+ +EDAA A+ F+ LMG V R+ IQ AN +V LD
Sbjct: 596 QVTLEDAARADETFTMLMGDLVPPRRRFIQTHANEVVELD 635
>UNIPROTKB|A6UX65 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:381754
"Pseudomonas aeruginosa PA7" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_001345400.1 ProteinModelPortal:A6UX65 SMR:A6UX65
STRING:A6UX65 GeneID:5358744 KEGG:pap:PSPA7_0004 PATRIC:19821910
BioCyc:PAER381754:GHMY-79-MONOMER Uniprot:A6UX65
Length = 806
Score = 889 (318.0 bits), Expect = 3.1e-106, Sum P(2) = 3.1e-106
Identities = 194/463 (41%), Positives = 279/463 (60%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS L +T+ R + Q Y G P L V D GT + F P + F+
Sbjct: 126 NALSHELRLTIRRHNKVWEQVYHHGVPQFPLR----EVGETDGSGTEVHFKPSPETFSN- 180
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKK 152
I F + +A RIREL+FLN + I LR E + E E F + GGL+ +V++LNT+K
Sbjct: 181 IHFSWDILAKRIRELSFLNSGVGILLRDERTGKE-----ELFKYEGGLKAFVEYLNTNKS 235
Query: 153 PLHDVVGF--RKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 210
++ V F +++ DG+ +++ALQW +D++++ +L + N+I DGGTH+ G +++LTR
Sbjct: 236 AVNQVFHFNVQREEDGVGVEVALQW-NDSFNENILCFTNNIPQRDGGTHLAGFRSALTRN 294
Query: 211 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 270
LN+ + K I+ +G+ REGLT IISV+VP+P+F QTK +L + EV+ V+Q
Sbjct: 295 LNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354
Query: 271 VQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSS 330
+ +Y ++L +P+ R+K L + LPGKLADC
Sbjct: 355 MGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414
Query: 331 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 390
P SE++IVEGDSAGGSAKQGR+RR QAILPL+GKILNVE+ M ++E+ LI
Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 474
Query: 391 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 450
ALG G+ E++ + LRYH III+TDADVDG+HIRTLLLTFF+R L + G +Y+ P
Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQP 534
Query: 451 PLYKVERGKQVQYCYDDAELKK--VKSSFPSNALYSIQRFKGL 491
PLYKV+RGKQ QY DD +++ +S+ +L+ + GL
Sbjct: 535 PLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPGL 577
Score = 182 (69.1 bits), Expect = 3.1e-106, Sum P(2) = 3.1e-106
Identities = 36/70 (51%), Positives = 52/70 (74%)
Query: 483 YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 542
+SIQR+KGLGEM P QLWETT++P R + ++ IEDA A+ +F++LMG V+ R++ I+
Sbjct: 736 HSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIE 795
Query: 543 -NAANLVNLD 551
NA + NLD
Sbjct: 796 SNALAVSNLD 805
>UNIPROTKB|Q89W70 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 EMBL:BA000040
GenomeReviews:BA000040_GR GO:GO:0003918 SUPFAM:SSF56719
HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939 HSSP:P06982
RefSeq:NP_767463.1 ProteinModelPortal:Q89W70 SMR:Q89W70
GeneID:1047796 KEGG:bja:bll0823 PATRIC:21185152
BioCyc:BJAP224911:GJEJ-831-MONOMER Uniprot:Q89W70
Length = 811
Score = 911 (325.7 bits), Expect = 1.3e-105, Sum P(2) = 1.3e-105
Identities = 198/439 (45%), Positives = 269/439 (61%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS L + +WRD E++ +++ G V L V+ D+ ++GT + F F
Sbjct: 139 NALSSKLGLRIWRDNKEHYIEFAHGDAVAPL---VVVGDAPGKRGTEVTFLASPDTFKN- 194
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
I++D T+ R+RELAFLN + IAL EK + E ++GG+EE+V++L+ +KK
Sbjct: 195 IEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKRE--EMHYSGGVEEFVKYLDRNKKA 252
Query: 154 LHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 212
+ + R + +GI ++ AL W +D+Y + +L + N+I DGGTH+ G + +LTR +N
Sbjct: 253 IVPAPIMVRAEANGIGVEAALWW-NDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVN 311
Query: 213 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 272
G K + I+L+G+ REGLT ++SV+VP+P+F QTK +L + EVR VV+ +
Sbjct: 312 --GYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLN 369
Query: 273 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 332
E L + E HP R KS L SSLPGKLADC
Sbjct: 370 EALQAWFEEHPSEAKMIVGKVIQAAAAREAARKARELTR-KSPLSVSSLPGKLADCQEKD 428
Query: 333 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 392
P +SE+FIVEGDSAGGSAKQGR+R FQA+LPLRGKILNVER M +E+I LI AL
Sbjct: 429 PAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERVRPDKMLGSEQIGTLITAL 488
Query: 393 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 452
G G+ E F E LRYHKII++TDADVDGAHIRTLLLTFFYR + + D G +Y+ PPL
Sbjct: 489 GTGISDE-FSIEKLRYHKIIVMTDADVDGAHIRTLLLTFFYRQMRDIIDGGYLYIAQPPL 547
Query: 453 YKVERGKQVQYCYDDAELK 471
YKV RGK QY D+ L+
Sbjct: 548 YKVSRGKSEQYLKDERALE 566
Score = 154 (59.3 bits), Expect = 1.3e-105, Sum P(2) = 1.3e-105
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 484 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQN 543
++QR+KGLGEM P QLWETTL+ R L Q+ +++ EA+ +F+ LMG V+ R++ IQ
Sbjct: 743 TLQRYKGLGEMNPEQLWETTLDTNARSLLQVKVKEVDEADDIFTKLMGDVVEPRRDFIQE 802
Query: 544 AANLVNLD 551
+ +D
Sbjct: 803 HSLSATID 810
>TIGR_CMR|BA_3657 [details] [associations]
symbol:BA_3657 "DNA topoisomerase IV, B subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005740 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
HOGENOM:HOG000075154 KO:K02622 OMA:TDGTGLH ProtClustDB:PRK05559
TIGRFAMs:TIGR01058 HSSP:P06982 RefSeq:NP_845922.1
RefSeq:YP_020292.2 RefSeq:YP_029649.1 ProteinModelPortal:Q81Y98
IntAct:Q81Y98 DNASU:1085976 EnsemblBacteria:EBBACT00000013021
EnsemblBacteria:EBBACT00000015630 EnsemblBacteria:EBBACT00000022573
GeneID:1085976 GeneID:2818281 GeneID:2850873 KEGG:ban:BA_3657
KEGG:bar:GBAA_3657 KEGG:bat:BAS3392
BioCyc:BANT260799:GJAJ-3454-MONOMER
BioCyc:BANT261594:GJ7F-3563-MONOMER Uniprot:Q81Y98
Length = 654
Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
Identities = 228/551 (41%), Positives = 324/551 (58%)
Query: 1 MIVTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGK- 59
+I+TVLHA NALSE L VT+ RDG Y Q++ G
Sbjct: 94 VILTVLHAGGKFGQGGYKTSGGLHGVGASVV--NALSEWLVVTIKRDGNIYEQRFENGGV 151
Query: 60 PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 119
PVTTL + GT + F PD +F+T +++ T+ R+RE AFL + I++
Sbjct: 152 PVTTLE----KIGKTKESGTTMHFKPDTTIFSTT-NYNYETLCERLRESAFLLKGMKISI 206
Query: 120 RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDA 179
+ E +D E + + + G+E +V +LN +K +H VV F + +GI +LA Q+ +D
Sbjct: 207 KDERNDLE----DVFHYETGIEAFVSYLNEEKDSIHPVVYFTGEQNGIEAELAFQF-NDG 261
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
YS+ +L + N++RT DGGTH G K ++TR N +K +K+KD +L G +REG+
Sbjct: 262 YSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVALLKEKDKNLEGTDIREGVAA 321
Query: 240 IISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXX 297
I+SVRVP +FEGQTK +LG E R +D V E+L +LE +PDV
Sbjct: 322 IVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFLEENPDVATLLVRKAIKAA 381
Query: 298 XXXXXXXXXXXXVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
R +K +L GKL S P+++E+++VEGDSAGGSAKQGRD
Sbjct: 382 QAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQKNELYLVEGDSAGGSAKQGRD 441
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
RRFQA+LPLRGK++N E+ A ++KNEEI +I A+G GV G +F E + Y K++I+T
Sbjct: 442 RRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGV-GNEFDVEDINYDKVVIMT 500
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ----VQYCYDDAELK 471
DAD DGAHI+ LLLTFFYRY K L + G +++ +PPLYKV +GK ++Y + D EL
Sbjct: 501 DADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELD 560
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 531
V Y +QR+KGLGEM QLWETT+NPE R L ++ I+DAA A ++LMG
Sbjct: 561 SVTKKVGKG--YMLQRYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMG 618
Query: 532 ARVDTRKELIQ 542
+V+ R++ I+
Sbjct: 619 DKVEPRRKWIE 629
>UNIPROTKB|P0C5C5 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737
GO:GO:0040007 GO:GO:0005618 GO:GO:0005694 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0000287
EMBL:BX842572 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 EMBL:L27512 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF
ProtClustDB:PRK05644 PIR:S44198 RefSeq:NP_214519.1
RefSeq:NP_334414.1 RefSeq:YP_006513317.1 PDB:2ZJT PDB:3IG0 PDB:3M4I
PDBsum:2ZJT PDBsum:3IG0 PDBsum:3M4I ProteinModelPortal:P0C5C5
SMR:P0C5C5 PRIDE:P0C5C5 EnsemblBacteria:EBMYCT00000001058
EnsemblBacteria:EBMYCT00000070955 GeneID:13315978 GeneID:887081
GeneID:922435 KEGG:mtc:MT0005 KEGG:mtu:Rv0005 KEGG:mtv:RVBD_0005
PATRIC:18121734 TubercuList:Rv0005 HOGENOM:HOG000075154
BindingDB:P0C5C5 ChEMBL:CHEMBL3489 EvolutionaryTrace:P0C5C5
Uniprot:P0C5C5
Length = 675
Score = 910 (325.4 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
Identities = 192/447 (42%), Positives = 274/447 (61%)
Query: 113 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDL 171
PK E + P K + + + GGL ++V+ +N K +H +V F G +++
Sbjct: 230 PKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEI 289
Query: 172 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 231
A+QW + YS+++ +AN+I T +GGTH EG +++LT +N K K +KDKD +L+G+
Sbjct: 290 AMQW-NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGD 348
Query: 232 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXX 291
+REGL +ISV+V P+FEGQTKT+LGN EV+ V + E LT + E +P
Sbjct: 349 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVN 408
Query: 292 XXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAK 351
VR+KS LPGKLADC ST P +SE+++VEGDSAGGSAK
Sbjct: 409 KAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 468
Query: 352 QGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI 411
GRD FQAILPLRGKI+NVE+ + KN E+Q +I ALG G+ E F LRYHKI
Sbjct: 469 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE-FDIGKLRYHKI 527
Query: 412 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE-RGKQVQYCYDDAE- 469
+++ DADVDG HI TLLLT +R+ + L + G +++ PPLYK++ + ++ Y D E
Sbjct: 528 VLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRER 587
Query: 470 ---LKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 525
L+ +K+ N IQR+KGLGEM +LWETT++P R+L+Q+ ++DAA A+ +
Sbjct: 588 DGLLEAGLKAGKKINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 647
Query: 526 FSSLMGARVDTRKELI-QNAANLVNLD 551
FS LMG VD R+ I +NA ++ LD
Sbjct: 648 FSILMGEDVDARRSFITRNAKDVRFLD 674
Score = 154 (59.3 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
Identities = 37/89 (41%), Positives = 52/89 (58%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS LEV + RDG E+ Q Y + +P+ +K + G+ +RFW D VF T
Sbjct: 129 NALSTRLEVEIKRDGYEWSQVYEKSEPLGLKQ----GAPTK-KTGSTVRFWADPAVFETT 183
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKE 122
++D T+A R++E+AFLN LTI L E
Sbjct: 184 -EYDFETVARRLQEMAFLNKGLTINLTDE 211
>UNIPROTKB|Q59192 [details] [associations]
symbol:parE "DNA topoisomerase 4 subunit B" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005740 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000075154 EMBL:Z73234
EMBL:AF024713 PIR:C69637 RefSeq:NP_389691.2
ProteinModelPortal:Q59192 SMR:Q59192
EnsemblBacteria:EBBACT00000000468 GeneID:936151 KEGG:bsu:BSU18090
PATRIC:18975449 GenoList:BSU18090 KO:K02622 OMA:TDGTGLH
ProtClustDB:PRK05559 BioCyc:BSUB:BSU18090-MONOMER BindingDB:Q59192
ChEMBL:CHEMBL3485 HAMAP:MF_00939 TIGRFAMs:TIGR01058 Uniprot:Q59192
Length = 655
Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
Identities = 232/555 (41%), Positives = 322/555 (58%)
Query: 1 MIVTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRG-K 59
+I+TVLHA NALSE L VT+ RDG Y Q++ G K
Sbjct: 95 VILTVLHAGGKFGQGGYKTSGGLHGVGASVV--NALSEWLTVTIERDGFVYQQRFENGGK 152
Query: 60 PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 119
PVT+L + + GT F PD +F+T ++ T++ R+RE AFL L I L
Sbjct: 153 PVTSLE----KIGKTKKTGTLTHFKPDPTMFSTTT-YNFETLSERLRESAFLLKGLKIEL 207
Query: 120 RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDA 179
E +D Q +++ G+E +V +LN +K L +VV F + I +D A Q+ +D
Sbjct: 208 IDERND----QREVFYYENGIEAFVAYLNEEKDVLSEVVSFEGEHHSIEVDFAFQF-NDG 262
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
YS+ +L + N++RT DGGTH G K ++TR N +K +K+KD +L G +REGL+
Sbjct: 263 YSENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEGTDIREGLSA 322
Query: 240 IISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXX 297
IISVR+P +FEGQTK +LG E R VD V E L +LE + D
Sbjct: 323 IISVRIPEELLQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRDTATLLVKKAIKAS 382
Query: 298 XXXXXXXXXXXXVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
R +K ++L GKL S P ++E+++VEGDSAGGSAKQGRD
Sbjct: 383 QAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGSAKQGRD 442
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
RRFQA+LPLRGK++N E+ A ++KNEEI +I A+G GV G DF + + Y KIII+T
Sbjct: 443 RRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGV-GADFSIDDINYDKIIIMT 501
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG---KQV-QYCYDDAELK 471
DAD DGAHI+ LLLTFFYRY K L + G +++ +PPLYKV +G K++ +Y + D E+
Sbjct: 502 DADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEIIEYAWSDEEMG 561
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 531
V Y+IQR+KGLGEM QLWETT+NPE R L ++ I+DAA ++LMG
Sbjct: 562 DVLKKVGKG--YTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVTTLMG 619
Query: 532 ARVDTRKELIQ-NAA 545
+V+ R++ I+ N A
Sbjct: 620 DKVEPRRKWIEKNVA 634
>TIGR_CMR|NSE_0721 [details] [associations]
symbol:NSE_0721 "DNA gyrase, B subunit" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_506597.1 ProteinModelPortal:Q2GD49
SMR:Q2GD49 STRING:Q2GD49 GeneID:3932056 KEGG:nse:NSE_0721
PATRIC:22681457 BioCyc:NSEN222891:GHFU-733-MONOMER Uniprot:Q2GD49
Length = 783
Score = 879 (314.5 bits), Expect = 1.7e-103, Sum P(2) = 1.7e-103
Identities = 183/441 (41%), Positives = 273/441 (61%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS+ L++T++RDG + ++ G+ V +L+ + + D+ GT + F P + F
Sbjct: 124 NALSDWLKLTIYRDGKVHFAEFENGETVRSLS---VTGECGDKTGTLVHFLPSRSTFKNT 180
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
+ +T+ R REL+FLNP L I+L + +F +GG EE+V +L+ K+P
Sbjct: 181 TEVSFSTLENRFRELSFLNPGLRISLLDMRKGSSTGKV-VFFSSGGTEEFVAYLDRSKQP 239
Query: 154 LHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 212
+H + VD I ID+++QW +D+Y + +L + N+I+ DGGTH+ +++++TR ++
Sbjct: 240 IHSTPIRVVGGVDSIAIDVSMQW-NDSYYENVLCFTNNIKQKDGGTHLAALRSAMTRVMH 298
Query: 213 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 272
+ K +K + +SGE VREGL+ I+SV++P+P+F QTK +L + EV+ V+++ V
Sbjct: 299 NYIVKENLIKKDKVVVSGEDVREGLSAILSVKLPDPKFSSQTKEKLISSEVKPVIEKIVS 358
Query: 273 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 332
+ L +LE +P R+K L ++LPGKLADC +
Sbjct: 359 DALASWLEENPSSARVIARKVVESALAREAAKKARDLTRRKGGLEITTLPGKLADCQEKS 418
Query: 333 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 392
PE SE+ IVEGDSAGGSAKQGRDR+ QA+LPLRGKILNVE+ + + EI NLI AL
Sbjct: 419 PELSELLIVEGDSAGGSAKQGRDRKTQAVLPLRGKILNVEKTRFHKVIGSAEIGNLIAAL 478
Query: 393 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 452
G + E+F + +RYHKIII+TDADVDG HIRTLLLTFF+RY + + + G +Y+ PL
Sbjct: 479 GTSIGEEEFNIDKIRYHKIIIMTDADVDGLHIRTLLLTFFFRYARPIVERGYLYIAQTPL 538
Query: 453 YKVER-GKQVQYCYDDAELKK 472
YKV R G V Y DDA L++
Sbjct: 539 YKVMRKGADV-YLRDDAALEE 558
Score = 166 (63.5 bits), Expect = 1.7e-103, Sum P(2) = 1.7e-103
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 485 IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE-LIQN 543
+QRFKGLGEM P QLW TTL+P R + ++ IE+AA A+ + S LMG V R++ ++ N
Sbjct: 715 LQRFKGLGEMNPEQLWSTTLDPSNRTIFKVTIEEAAVADQMCSMLMGDAVGPRRDFIVNN 774
Query: 544 AANLVNLD 551
A N N+D
Sbjct: 775 ALNASNID 782
Score = 38 (18.4 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 221 VKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLG-NPEVRKVVDQSVQEYLTEY 278
+ + D + V +GL +VR + G T G + V +VVD SV E L Y
Sbjct: 1 MSNTDYTADSIKVLKGLE---AVRKRPGMYIGDTDDGSGLHQMVYEVVDNSVDESLAGY 56
>TIGR_CMR|APH_0716 [details] [associations]
symbol:APH_0716 "DNA gyrase, B subunit" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_505297.1 ProteinModelPortal:Q2GK04 SMR:Q2GK04
STRING:Q2GK04 GeneID:3930586 KEGG:aph:APH_0716 PATRIC:20950116
BioCyc:APHA212042:GHPM-734-MONOMER Uniprot:Q2GK04
Length = 793
Score = 843 (301.8 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 181/443 (40%), Positives = 267/443 (60%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS LE+ ++++G EY ++ GK V L + + +++GT +RF P VF+
Sbjct: 123 NALSSWLELVIYKEGREYFMRFEEGKAVAPLK---MVGECGNKKGTCVRFMPSSDVFSFT 179
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDP--EKNQYNEYFFAG-GLEEYVQWLNTD 150
F ++T+ RIREL+FLN ++I+L+ P E N N A G+ +V++L+ +
Sbjct: 180 -DFSYSTLENRIRELSFLNSNVSISLKDLRESPVLESNFGNVSDAATKGVSLFVEYLDRN 238
Query: 151 KKPLHDVVGFRKDVDGITIDLALQWC-SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 209
K P+ V+ + G I + + C +D+Y + ML + N+IR +GGTH+ G +++LTR
Sbjct: 239 KTPVTPVITLSGIMSGYEISVEVSMCWNDSYYENMLCFTNNIRQREGGTHLAGFRSALTR 298
Query: 210 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 269
+N+ +K +S+ GE VREGLTC++S+++P+P F QTK +L + E R VV+
Sbjct: 299 CVNNYATNEGYLKKAKVSIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVES 358
Query: 270 SVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCS 329
+ E L+ E +P + ++ + L +S+PGKLADC
Sbjct: 359 IMFEKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKSRGTLDFTSIPGKLADCQ 418
Query: 330 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 389
+PE SE+FIVEG+SAGGSAKQGRDRR QA+L LRGKILNVER + EI +LI
Sbjct: 419 EKSPELSELFIVEGNSAGGSAKQGRDRRCQAVLSLRGKILNVERVGLDRTLSSSEITSLI 478
Query: 390 RALG--LGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 447
A+G +G+ D K +RYHKIII+TDADVDG+HIRTLLLTFF+RY + L D G +Y+
Sbjct: 479 MAIGSNIGIGSFDISK--VRYHKIIIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYLYI 536
Query: 448 GVPPLYKVERGKQVQYCYDDAEL 470
PPLYK+ + K+ Y +D L
Sbjct: 537 AQPPLYKLTKHKKDTYIKNDEAL 559
Score = 168 (64.2 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 35/69 (50%), Positives = 48/69 (69%)
Query: 484 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQN 543
++QRFKGLGEM QLW+TTLNP+ R L ++ I DA A+ +FS LMG V+ R++ I N
Sbjct: 724 ALQRFKGLGEMNADQLWDTTLNPQTRTLLKVKIADAEAADAIFSVLMGDFVEPRRDFINN 783
Query: 544 -AANLVNLD 551
A + N+D
Sbjct: 784 NALKVQNID 792
>TIGR_CMR|ECH_0620 [details] [associations]
symbol:ECH_0620 "DNA gyrase, B subunit" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_507430.1 ProteinModelPortal:Q2GGK3
STRING:Q2GGK3 GeneID:3927738 KEGG:ech:ECH_0620 PATRIC:20576692
BioCyc:ECHA205920:GJNR-622-MONOMER Uniprot:Q2GGK3
Length = 798
Score = 839 (300.4 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 177/445 (39%), Positives = 274/445 (61%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS LE+T+WR+G EY ++ G V +L+ + ++ ++GT+I F P K +F++
Sbjct: 123 NALSSWLELTIWRNGKEYFMRFEDGITVKSLS---VVGENTTKKGTKITFLPSKNIFSS- 178
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKE------DSD---PEKNQYNEYFFAGGLEEYV 144
I F ++T+ RIREL+FLN + + L+ +S + ++ N+ G +V
Sbjct: 179 INFSYSTLENRIRELSFLNSNINMNLKDLRGAQILNSSFGLKDNSKVND-IEDRGTAAFV 237
Query: 145 QWLNTDKKPLHDVVGFRKDV--DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEG 202
++L+ +K + VV V GI+++L++ W +D+Y + ML + N+IR DGGTH+ G
Sbjct: 238 KYLDRNKTAVTKVVHIEGIVLEHGISLELSMHW-NDSYYENMLCFTNNIRQKDGGTHLAG 296
Query: 203 VKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 262
++++TR +N+ +K +++ GE VREGLTC++++++P+P+F QTK +L + E
Sbjct: 297 FRSAMTRCINNYATNEGFLKKAKVNILGEDVREGLTCVLAIKLPDPKFSSQTKDKLVSSE 356
Query: 263 VRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLP 322
R V+ V E LT E +P + ++ K+ + LP
Sbjct: 357 ARTAVENIVYEKLTNIFETNPKLATSIIERIIRSAKGREAARRARDLIKSKNGFDFTILP 416
Query: 323 GKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKN 382
GKLADC +PE SE+FIVEG+SAGGSAKQGRDRR QA+L L+GKILNVER + +
Sbjct: 417 GKLADCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLSLKGKILNVERASLDRILSS 476
Query: 383 EEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDE 442
EI +LI A+G + E+F E +RYHK+II+TDADVDG+HIRTLLLTFF+RY + + ++
Sbjct: 477 AEIASLITAIGSNIGTENFDIEKVRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREVIEK 536
Query: 443 GCIYVGVPPLYKVERGKQVQYCYDD 467
G +Y+ PPLYKV + K+ Y +D
Sbjct: 537 GYLYIAQPPLYKVTKHKKEFYIKND 561
Score = 172 (65.6 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 36/69 (52%), Positives = 48/69 (69%)
Query: 484 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQN 543
++QRFKGLGEM QLW+TTLNPE R L ++ I D A+ +FS LMG V+ R++ I N
Sbjct: 729 TLQRFKGLGEMNADQLWDTTLNPETRTLLKIKIADCEAADSIFSVLMGDFVEPRRDFINN 788
Query: 544 -AANLVNLD 551
A N+ N+D
Sbjct: 789 NALNVQNID 797
>UNIPROTKB|Q9RVW5 [details] [associations]
symbol:DR_0906 "DNA gyrase, subunit B" species:243230
"Deinococcus radiodurans R1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE000513
GenomeReviews:AE000513_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075154 HSSP:P06982 PIR:A75461
RefSeq:NP_294630.1 ProteinModelPortal:Q9RVW5 SMR:Q9RVW5
GeneID:1799432 KEGG:dra:DR_0906 PATRIC:21629376
BioCyc:DRAD243230:GH46-1277-MONOMER Uniprot:Q9RVW5
Length = 663
Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
Identities = 227/533 (42%), Positives = 314/533 (58%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKD-RQGTRIRFWPDKQVFTT 92
NALS L+VTV + +H ++ RG V L VL KD + T++ F PD +F
Sbjct: 132 NALSTYLDVTVNKHKQLHHIRFERGVLVQPL--EVLGATPKDVKWSTKVSFHPDPTIFKE 189
Query: 93 AI-QFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF--AGGLEEYVQWLNT 149
QFD+ I R+RELA+L L I +R E ++ + E F GG+ + + L T
Sbjct: 190 FDNQFDYLRIRNRLRELAYLTG-LKIVIRDERTELHGGEIKEEVFHEKGGIANFARALVT 248
Query: 150 DK-KPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 207
D K L+D V R + +++A + SD +L YAN IRT DGGT + G K +
Sbjct: 249 DDTKLLYDQPVVMRGTHAEVEVEVAFIHANTYASDNILTYANMIRTRDGGTPLTGFKTAY 308
Query: 208 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 267
TR LN K +K + SG+ + EG+ C++SV+V +P+FE Q K +L N E + V
Sbjct: 309 TRVLNKYAKDKNLIKAGNPVPSGDDLLEGIYCVVSVKVGDPQFESQAKVKLLNSEAQTAV 368
Query: 268 DQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLAD 327
+ V E ++LE +P + VR+ + L + LPGKLAD
Sbjct: 369 NAIVGEKFAQFLEENPKIGKTIVEKAAEAARARDAARKARDIVRRSNPLENDDLPGKLAD 428
Query: 328 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 387
CSS P ESE+FIVEG+SAGGSAK GR+RRFQAILPLRGKILNVE+ + + KN EI++
Sbjct: 429 CSSQDPAESELFIVEGNSAGGSAKGGRERRFQAILPLRGKILNVEKAELNKILKNAEIRS 488
Query: 388 LIRALGLGV--KGED--FKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEG 443
LI A+G G KGE+ F E LRYHKI+I+TDAD+DG HI TLLLTFF+R+ + + ++G
Sbjct: 489 LIGAIGAGFDGKGEEMRFDLENLRYHKIVIMTDADMDGGHITTLLLTFFFRFMRPIVEQG 548
Query: 444 CIYVGVPPLYKVERGKQVQ-----YCYDDAELKK-VKSSFPSNALYSIQRFKGLGEMMPV 497
+Y+ PPLYK+ G Q + Y + + ELK+ V + + Y IQRFKGLGEM
Sbjct: 549 HLYIAQPPLYKITVGAQTKNNKGVYLFTNEELKEHVADAVKAGKKYEIQRFKGLGEMNAE 608
Query: 498 QLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNL 550
QLWETT+NPE R+LK++ I+D AN +F +LMG+ V RK+ I+ A +
Sbjct: 609 QLWETTMNPETRVLKRVSIDDLIIANEIFDALMGSEVAPRKDFIRENARFAEI 661
>UNIPROTKB|O67137 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224324 "Aquifex
aeolicus VF5" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE000657
GenomeReviews:AE000657_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 PIR:F70388
RefSeq:NP_213700.1 ProteinModelPortal:O67137 SMR:O67137
PRIDE:O67137 GeneID:1193771 KEGG:aae:aq_1026 PATRIC:20959360
OMA:IFETTEF ProtClustDB:PRK14939 BioCyc:AAEO224324:GJBH-733-MONOMER
Uniprot:O67137
Length = 792
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 220/524 (41%), Positives = 322/524 (61%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF-TT 92
NALSE L V V+RDG Y + RG+ V L HV+ ++K R GT++ F PD ++F TT
Sbjct: 130 NALSEWLIVEVYRDGKIYRMAFKRGEVVEPL--HVVG-ETKKR-GTKVSFKPDPEIFETT 185
Query: 93 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 152
I+FD + R+RELA+LNP++ L +D ++ Y F G+EE V++LN K+
Sbjct: 186 EIKFD--IVEKRVRELAYLNPEVKFEL----TDERLGKHLIYKFDRGIEELVKYLNEGKE 239
Query: 153 PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 211
PL D++ + + +G+ +D+A Q+ D Y + + + N+I+T++GGTH+ G ++ L++ +
Sbjct: 240 PLFKDIIRIQGEKEGVIVDIAFQYVKD-YKERIESFVNNIKTVEGGTHVTGFRSGLSKAV 298
Query: 212 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 271
+ + K K+ S +GE VREGLT +++ +VPNP+FEGQTKT+LGN V+++V+
Sbjct: 299 IRMAQGLKLAKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQNVKQIVESIT 358
Query: 272 QEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSST 331
++LT Y E DV VR+KS L LPGKLADCS T
Sbjct: 359 YDFLTSYFEKKRDVLKAIVEKAIEAALAREAAKKAKELVRRKSPLEEGVLPGKLADCSET 418
Query: 332 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 391
P + EIF+VEGDSAGGSAKQ RDRR+QAILPLRGKI+NVE+ + N+EI+ ++ A
Sbjct: 419 DPSKCEIFLVEGDSAGGSAKQARDRRYQAILPLRGKIINVEKARIDKVLSNDEIKAIVSA 478
Query: 392 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 451
LG G+ GED + LRYHKII++TDADVDG+HIRTLLLTFFYR+ L +EG +Y+ PP
Sbjct: 479 LGCGI-GEDLDLKKLRYHKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEEGYVYIAEPP 537
Query: 452 LYKVERGKQVQYCYDDAELKK--VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR 509
LY+V++GK+ Y DD E + + L + + GE + V+L L +
Sbjct: 538 LYRVKKGKKEIYIKDDKEFEHFLLNEIREKGRLVDAREKEFKGEEL-VRLL-IDLKDYED 595
Query: 510 MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHL 553
+ LV + E N+V + L+ RV R+E ++N A + + HL
Sbjct: 596 AYRALV-KSKGE-NLV-NFLLTHRV--REEDLRNPARVKEITHL 634
Score = 200 (75.5 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 40/71 (56%), Positives = 54/71 (76%)
Query: 485 IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNA 544
+QR+KGLGEM P QLWETT+NP+ R LK++ IEDAAEA+ +F+ LMG +V+ R+E I+
Sbjct: 724 VQRYKGLGEMNPEQLWETTMNPKTRRLKKVKIEDAAEADRIFTILMGEQVEPRREFIEAY 783
Query: 545 ANLVNLDHLDI 555
A V HLD+
Sbjct: 784 AKEVK--HLDV 792
>UNIPROTKB|P35886 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 EMBL:L27063
EMBL:AL939118 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644
HOGENOM:HOG000075154 RefSeq:NP_628061.1 ProteinModelPortal:P35886
GeneID:1099310 KEGG:sco:SCO3874 PATRIC:23737532 Uniprot:P35886
Length = 686
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 217/541 (40%), Positives = 324/541 (59%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF-TT 92
NALS + V V DG + Q+Y G P +L H ++ + GT + FW D +F TT
Sbjct: 151 NALSTRVAVEVKTDGYRWTQEYKLGVPTASLARH----EATEETGTTVTFWADGDIFETT 206
Query: 93 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDS----------DPEKNQYNE--YFFAGGL 140
F+ + + K+ + +E + + EK++ Y + GG+
Sbjct: 207 DYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKHEVKSVSYHYEGGI 266
Query: 141 EEYVQWLNTDKKPL-HD-VVGFR-KDVD-GITIDLALQWCSDAYSDTMLGYANSIRTIDG 196
++V +LN+ K L H V+ +D D +++++A+QW + Y++ + +AN I T +G
Sbjct: 267 VDFVTYLNSRKGELVHPTVIDLEAEDKDKSLSLEVAMQW-NGGYTEGVYSFANIIHTHEG 325
Query: 197 GTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKT 256
GTH EG +A+LT +N + K +++KD +L+G+ +REGLT IISV++ P+FEGQTKT
Sbjct: 326 GTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLAEPQFEGQTKT 385
Query: 257 RLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVL 316
+LGN EV+ V + V E+LT++L+ +P+ R+K +L
Sbjct: 386 KLGNTEVKTFVQKVVYEHLTDWLDRNPNEAADIIRKGIQAAHARVAARKARDLTRRKGLL 445
Query: 317 RSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDE 376
S+SLPGKL+DC S P + EIFIVEGDSAGGSAK GR+ ++QAILP+RGKILNVE+
Sbjct: 446 ESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARI 505
Query: 377 AAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQ 436
+ +N+EIQ +I A G GV EDF E LRYHKII++ DADVDG HI TLLLTF +R+
Sbjct: 506 DRILQNQEIQAMISAFGTGVH-EDFDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFM 564
Query: 437 KTLFDEGCIYVGVPPLYKVERGKQ-VQYCYDDAE----LKKVKSSFPSNALYSIQRFKGL 491
+ L + G +Y+ PPLYK++ G+ +Y Y D E ++ + + S+QRFKGL
Sbjct: 565 RPLVESGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALIEMGRQAGKRIREDSVQRFKGL 624
Query: 492 GEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNL 550
GEM +L TT++ E R+L Q+ ++DAA+A+ +FS LMG V+ R+ IQ NA ++ L
Sbjct: 625 GEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRAFIQRNAKDVRFL 684
Query: 551 D 551
D
Sbjct: 685 D 685
>UNIPROTKB|Q7RHG3 [details] [associations]
symbol:PY04024 "DNA topoisomerase II, putative"
species:73239 "Plasmodium yoelii yoelii" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 HSSP:P06982 EMBL:AABL01001206 RefSeq:XP_724272.1
ProteinModelPortal:Q7RHG3 STRING:Q7RHG3 GeneID:3789597
KEGG:pyo:PY04024 EuPathDB:PlasmoDB:PY04024 Uniprot:Q7RHG3
Length = 930
Score = 522 (188.8 bits), Expect = 5.1e-95, Sum P(4) = 5.1e-95
Identities = 107/271 (39%), Positives = 174/271 (64%)
Query: 138 GGLEEYVQWLNTDK----KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRT 193
GGL+EY++ L +K K + V+ I +DL L+W ++ Y++ +L + N++ T
Sbjct: 407 GGLDEYMEKLTKNKTNIFKTNNKVISISCFQKNIHVDLKLKWVTNQYNENILSFVNNVNT 466
Query: 194 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQ 253
IDGGTH++ +K +++R++N KK++T+K+ +++ GE++REGLT I+S+++ NPEFEGQ
Sbjct: 467 IDGGTHVDAMKYAISRSINYNVKKNETIKNF-VNIPGEYIREGLTAILSIKMNNPEFEGQ 525
Query: 254 TKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQK 313
TKT+LG+ ++ +++ + E L+E + P++ +R K
Sbjct: 526 TKTKLGSYYLKPILESIIFEKLSEIFDFEPNLLNTIYLKALQAKKSDEEAKAARDLIRSK 585
Query: 314 S-VLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVE 372
+ S+ LPGKL DC S ++EIFIVEGDSA GSAKQ R+R QAILPL+GKILNVE
Sbjct: 586 NNQYYSTILPGKLVDCISDDISKNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVE 645
Query: 373 R-KDEAAMYKNEEIQNLIRALGLGVKGEDFK 402
+ K+ +++N E+++LI A+GL V ++ K
Sbjct: 646 KIKNNKKIFENIELKSLITAIGLNVNYDNSK 676
Score = 190 (71.9 bits), Expect = 5.1e-95, Sum P(4) = 5.1e-95
Identities = 39/77 (50%), Positives = 49/77 (63%)
Query: 396 VKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 455
+K +F +LRY KIII+TDADVDG HI LLLTF YR+QK + + G +YV PPLYKV
Sbjct: 691 IKKNNFIDTSLRYGKIIIMTDADVDGEHICILLLTFLYRFQKEIIENGNVYVACPPLYKV 750
Query: 456 ERGKQVQYCYDDAELKK 472
K D+ + K
Sbjct: 751 TYNKFFDNNIKDSVISK 767
Score = 168 (64.2 bits), Expect = 5.1e-95, Sum P(4) = 5.1e-95
Identities = 34/71 (47%), Positives = 51/71 (71%)
Query: 477 FPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDT 536
F S+ Y IQRFKGLGEMM QLW TT++P+ R L ++ + DA +AN + +SLMG +
Sbjct: 859 FSSSKKYEIQRFKGLGEMMADQLWSTTMDPQVRKLIRVTVSDAIKANNLINSLMGEDSKS 918
Query: 537 RKE-LIQNAAN 546
RK+ +I+N+++
Sbjct: 919 RKDFIIKNSSS 929
Score = 139 (54.0 bits), Expect = 5.1e-95, Sum P(4) = 5.1e-95
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS ++V V+RD Y+ + +GK V L P+ ++GT+I + PD +F T
Sbjct: 287 NALSTFMKVNVFRDNKIYNIELEKGKVVKELNVQDCPIK---KRGTQIHYKPDNTIFKTN 343
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKN 129
I+ + I R+ +LA+LN KLT E + + N
Sbjct: 344 IKHNSEFIKNRLHQLAYLNDKLTFYFYDERNSNKGN 379
Score = 46 (21.3 bits), Expect = 4.4e-24, Sum P(3) = 4.4e-24
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 148 NTDKKPLHDVVGFRKDVDGITIDLALQWCSDA----YSDTMLGYANSIRTIDGGTHIEGV 203
NTD K LH ++ F + VD + C+ ++D + ++ R I H +
Sbjct: 137 NTDSKGLHQIL-F-EIVDNAVDEYNNHECNQIKVIIHNDESITIEDNGRGIPCDIHEKTK 194
Query: 204 KASLTRTLNSLGKKSKTVKDKDISL 228
K++L L L +K + D DI++
Sbjct: 195 KSALETVLTVLHSGAKFLDD-DINM 218
>TIGR_CMR|CJE_0003 [details] [associations]
symbol:CJE_0003 "DNA gyrase, B subunit" species:195099
"Campylobacter jejuni RM1221" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000025
GenomeReviews:CP000025_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_178032.1 ProteinModelPortal:Q5HXF3 STRING:Q5HXF3
GeneID:3230659 KEGG:cjr:CJE0003 PATRIC:20041695
BioCyc:CJEJ195099:GJC0-3-MONOMER Uniprot:Q5HXF3
Length = 769
Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
Identities = 195/439 (44%), Positives = 274/439 (62%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS+ L TV R+G Y Q++S GK ++ + + GT I FWPD Q+F
Sbjct: 123 NALSKKLVATVERNGEIYRQEFSEGKVISEFGV----IGKSKKTGTTIEFWPDDQIFEVT 178
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
+FD+ +A R RELA+LNPK+TI + D ++ + F GG+ ++V LN K+
Sbjct: 179 -EFDYEILAKRFRELAYLNPKITINFK----DNRVGKHESFHFEGGISQFVIDLNK-KEA 232
Query: 154 LHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNS 213
L + F D + + +++AL + +D YS+ +L + N+I+T DGGTH G + LTR +++
Sbjct: 233 LTKAIFFSVDEEDVNVEVALLY-NDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISN 291
Query: 214 LGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQE 273
+ + + ++KD ++GE VREGL ++SV+VP P+FEGQTK +LG+ VR +V ++ E
Sbjct: 292 YIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFE 351
Query: 274 YLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTP 333
YLT+Y E +P R+K L +LPGKLADC S P
Sbjct: 352 YLTKYFEENPIEAKAIMNKVLMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDP 411
Query: 334 EESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALG 393
ESEI++VEGDSAGGSAKQGR+R FQAILPLRGKILNVE+ + K+E+IQN+I A G
Sbjct: 412 SESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFG 471
Query: 394 LGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLY 453
G+ GEDF LRYHKIII+TDADVDG+HI+TLLLTFF+R+ L G IY+ PPLY
Sbjct: 472 CGI-GEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLY 530
Query: 454 KVERGKQVQYCYDDAELKK 472
++ K+ Y D+ L +
Sbjct: 531 LYKKAKKQIYLKDEKALSE 549
Score = 183 (69.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 64/205 (31%), Positives = 103/205 (50%)
Query: 355 DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI--I 412
++RF I +R I N NEE+ ++I+ L +G + + ++I
Sbjct: 587 EKRFNVISVIRYMIEN----SNLVKGNNEELFSVIKQF-LETQGHNILNHYINENEIRAF 641
Query: 413 ILTDADVDGAHIRTLLLTF-FYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE-L 470
+ T ++ I L T Y +FD+ K +RG +++ D E L
Sbjct: 642 VQTQNGLEELVINEELFTHPLYEEANYIFDK----------IK-DRG--LEFDKDILEVL 688
Query: 471 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 530
+ V+++ A +IQR+KGLGEM P QLWETT++P R L ++ IEDA AN F+ M
Sbjct: 689 EDVETNAKKGA--TIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746
Query: 531 GARVDTRKELIQNAANLVNLDHLDI 555
G V+ R++ IQ A+ ++ HLD+
Sbjct: 747 GDEVEPRRDYIQ--AHAKDVKHLDV 769
>GENEDB_PFALCIPARUM|PFL1915w [details] [associations]
symbol:PFL1915w "dna gyrase subunit b, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=IDA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:AE014188 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0020011 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 HOGENOM:HOG000075156
GenomeReviews:AE014188_GR HSSP:P06982 RefSeq:XP_001350789.1
ProteinModelPortal:Q8I528 IntAct:Q8I528 MINT:MINT-1670662
PRIDE:Q8I528 EnsemblProtists:PFL1915w:mRNA GeneID:811435
KEGG:pfa:PFL1915w EuPathDB:PlasmoDB:PF3D7_1239500 OMA:YDERSEN
ProtClustDB:PTZ00109 Uniprot:Q8I528
Length = 1006
Score = 503 (182.1 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 105/264 (39%), Positives = 166/264 (62%)
Query: 139 GLEEYVQWLNTDKKPL---HD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTI 194
GL EY+ + +K L +D ++ I IDL ++W S+ Y++ ++ + N++ T
Sbjct: 465 GLNEYITNITKNKTNLFKDNDKIISISCYHKNIYIDLRMKWLSNQYNENIISFVNNVNTT 524
Query: 195 DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 254
DGGTH++ +K +++R +N KK++ +K+ +++ GE++REGLT I+SV++ NPEFEGQT
Sbjct: 525 DGGTHVDALKYAVSRCVNYNIKKNEMIKNF-VNIPGEYIREGLTAILSVKMNNPEFEGQT 583
Query: 255 KTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKS 314
KT+LG+ ++ +++ + E L+E + P++ +R K+
Sbjct: 584 KTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSIYFKALQAKLSDEEAKAARDLIRSKN 643
Query: 315 VLRSSS-LPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVER 373
SS+ LPGKL DC S +EIFIVEGDSA GSAKQ R+R QAILPL+GKILNVE+
Sbjct: 644 NQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEK 703
Query: 374 -KDEAAMYKNEEIQNLIRALGLGV 396
K+ +++N E+++LI ALGL V
Sbjct: 704 IKNNKRIFENSELKSLITALGLNV 727
Score = 193 (73.0 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 43/95 (45%), Positives = 56/95 (58%)
Query: 365 RGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHI 424
+GK N ++K + + E QN L K + LRY K+II+TDADVDG HI
Sbjct: 745 KGK--NSKKKSDLKNSRFESTQNNNNILNK--KKDILVDNTLRYGKVIIMTDADVDGEHI 800
Query: 425 RTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 459
R LLLTF YR+QK + + G +YV PPLYK+ K
Sbjct: 801 RILLLTFLYRFQKEIIENGNVYVACPPLYKITYNK 835
Score = 149 (57.5 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 32/64 (50%), Positives = 38/64 (59%)
Query: 483 YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 542
Y IQRFKGLGEMM QLW TT++P R L ++ + DA AN + SLMG RK I
Sbjct: 939 YEIQRFKGLGEMMADQLWNTTMDPTVRKLIRVTVNDAIRANDLIFSLMGEDSKLRKNFIL 998
Query: 543 NAAN 546
N
Sbjct: 999 ENTN 1002
Score = 138 (53.6 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS ++V V+R+ Y + +GK LT P++ ++GT+I + PD +F ++
Sbjct: 290 NALSSFMKVKVFRNNKIYSIELEKGKVTKELTITNCPIN---KRGTQIHYKPDSSIFKSS 346
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQY 131
+ + + I RI +LA+LN KLT E S+ + + Y
Sbjct: 347 TKHNSDLIKNRIHQLAYLNEKLTFYFYDERSENKNSIY 384
Score = 38 (18.4 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 452 LYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFK 489
+ VE+ K + ++++ELK + ++ N Y + K
Sbjct: 698 ILNVEKIKNNKRIFENSELKSLITALGLNVNYDNKNLK 735
Score = 37 (18.1 bits), Expect = 2.1e-21, Sum P(3) = 2.1e-21
Identities = 28/132 (21%), Positives = 48/132 (36%)
Query: 148 NTDKKPLHDVVGFRKDVDGITIDLALQWCSDA----YSDTMLGYANSIRTIDGGTHIEGV 203
NTD K LH ++ F + +D + C+ + D + ++ R I H +
Sbjct: 147 NTDVKGLHQIL-F-EIIDNSVDEYNNFECNTIKVVIHKDDSVTIEDNGRGIPCDVHEKTK 204
Query: 204 KASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 262
K++L L L +K D+ D + G T S + N
Sbjct: 205 KSALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNTNT-SEKNNRDNISNNNNNNNNNKR 263
Query: 263 VRKVVDQSVQEY 274
+K +S Q+Y
Sbjct: 264 TKKNSKESAQKY 275
>UNIPROTKB|Q8I528 [details] [associations]
symbol:GyrB "Term=DNA gyrase subunit B;evidence=inferred
from direct assay" species:36329 "Plasmodium falciparum 3D7"
[GO:0020011 "apicoplast" evidence=IDA] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE014188
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0020011
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 HOGENOM:HOG000075156 GenomeReviews:AE014188_GR
HSSP:P06982 RefSeq:XP_001350789.1 ProteinModelPortal:Q8I528
IntAct:Q8I528 MINT:MINT-1670662 PRIDE:Q8I528
EnsemblProtists:PFL1915w:mRNA GeneID:811435 KEGG:pfa:PFL1915w
EuPathDB:PlasmoDB:PF3D7_1239500 OMA:YDERSEN ProtClustDB:PTZ00109
Uniprot:Q8I528
Length = 1006
Score = 503 (182.1 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 105/264 (39%), Positives = 166/264 (62%)
Query: 139 GLEEYVQWLNTDKKPL---HD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTI 194
GL EY+ + +K L +D ++ I IDL ++W S+ Y++ ++ + N++ T
Sbjct: 465 GLNEYITNITKNKTNLFKDNDKIISISCYHKNIYIDLRMKWLSNQYNENIISFVNNVNTT 524
Query: 195 DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 254
DGGTH++ +K +++R +N KK++ +K+ +++ GE++REGLT I+SV++ NPEFEGQT
Sbjct: 525 DGGTHVDALKYAVSRCVNYNIKKNEMIKNF-VNIPGEYIREGLTAILSVKMNNPEFEGQT 583
Query: 255 KTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKS 314
KT+LG+ ++ +++ + E L+E + P++ +R K+
Sbjct: 584 KTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSIYFKALQAKLSDEEAKAARDLIRSKN 643
Query: 315 VLRSSS-LPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVER 373
SS+ LPGKL DC S +EIFIVEGDSA GSAKQ R+R QAILPL+GKILNVE+
Sbjct: 644 NQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEK 703
Query: 374 -KDEAAMYKNEEIQNLIRALGLGV 396
K+ +++N E+++LI ALGL V
Sbjct: 704 IKNNKRIFENSELKSLITALGLNV 727
Score = 193 (73.0 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 43/95 (45%), Positives = 56/95 (58%)
Query: 365 RGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHI 424
+GK N ++K + + E QN L K + LRY K+II+TDADVDG HI
Sbjct: 745 KGK--NSKKKSDLKNSRFESTQNNNNILNK--KKDILVDNTLRYGKVIIMTDADVDGEHI 800
Query: 425 RTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK 459
R LLLTF YR+QK + + G +YV PPLYK+ K
Sbjct: 801 RILLLTFLYRFQKEIIENGNVYVACPPLYKITYNK 835
Score = 149 (57.5 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 32/64 (50%), Positives = 38/64 (59%)
Query: 483 YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 542
Y IQRFKGLGEMM QLW TT++P R L ++ + DA AN + SLMG RK I
Sbjct: 939 YEIQRFKGLGEMMADQLWNTTMDPTVRKLIRVTVNDAIRANDLIFSLMGEDSKLRKNFIL 998
Query: 543 NAAN 546
N
Sbjct: 999 ENTN 1002
Score = 138 (53.6 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS ++V V+R+ Y + +GK LT P++ ++GT+I + PD +F ++
Sbjct: 290 NALSSFMKVKVFRNNKIYSIELEKGKVTKELTITNCPIN---KRGTQIHYKPDSSIFKSS 346
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQY 131
+ + + I RI +LA+LN KLT E S+ + + Y
Sbjct: 347 TKHNSDLIKNRIHQLAYLNEKLTFYFYDERSENKNSIY 384
Score = 38 (18.4 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 452 LYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFK 489
+ VE+ K + ++++ELK + ++ N Y + K
Sbjct: 698 ILNVEKIKNNKRIFENSELKSLITALGLNVNYDNKNLK 735
Score = 37 (18.1 bits), Expect = 2.1e-21, Sum P(3) = 2.1e-21
Identities = 28/132 (21%), Positives = 48/132 (36%)
Query: 148 NTDKKPLHDVVGFRKDVDGITIDLALQWCSDA----YSDTMLGYANSIRTIDGGTHIEGV 203
NTD K LH ++ F + +D + C+ + D + ++ R I H +
Sbjct: 147 NTDVKGLHQIL-F-EIIDNSVDEYNNFECNTIKVVIHKDDSVTIEDNGRGIPCDVHEKTK 204
Query: 204 KASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 262
K++L L L +K D+ D + G T S + N
Sbjct: 205 KSALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNTNT-SEKNNRDNISNNNNNNNNNKR 263
Query: 263 VRKVVDQSVQEY 274
+K +S Q+Y
Sbjct: 264 TKKNSKESAQKY 275
>UNIPROTKB|O69998 [details] [associations]
symbol:O69998 "Putative DNA gyrase subunit B"
species:100226 "Streptomyces coelicolor A3(2)" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 HOGENOM:HOG000075154 ProtClustDB:PRK05559
HSSP:P06982 EMBL:AL939125 PIR:T35196 RefSeq:NP_629945.1
ProteinModelPortal:O69998 GeneID:1101264 KEGG:sco:SCO5822
PATRIC:23741544 OMA:DSEMIIS Uniprot:O69998
Length = 707
Score = 704 (252.9 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 159/399 (39%), Positives = 229/399 (57%)
Query: 169 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 228
+D+AL+W Y T+ + N I T GGTH+ G + ++ +T+N + + K ++ + +
Sbjct: 310 VDVALRW-GTGYDTTVRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRTKKMLRVAEDDI 368
Query: 229 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYL-ELHPDVXX 287
+ EGLT +++VR+ P+FEGQTK LG R++V+ + L +L D
Sbjct: 369 VKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISRELKAFLTSTKRDAAQ 428
Query: 288 XXXXXXXXXXXXXXXXXXXXX---XVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 344
R+K+ L SSSLP KLADC S + SE+FIVEGD
Sbjct: 429 QARVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGD 488
Query: 345 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 404
SA G+AK R+ FQA+LP+RGKILNV++ M KN E +I+ +G G G F +
Sbjct: 489 SALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAG-SGRTFDID 547
Query: 405 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE--RGKQVQ 462
A RY KII++TDADVDG+HIRTLLLT F+RY + + + G ++ VPPL+++E + K+ Q
Sbjct: 548 AARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQ 607
Query: 463 ----YCYDDAELKKVKSSFPS-NALY--SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLV 515
Y Y D EL+ F S N Y SIQR+KGLGEM QL ETT++P +R L+++
Sbjct: 608 DKYVYTYSDRELRDKLMEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPRRRTLRRIN 667
Query: 516 IEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLD 554
+ D A VF LMG V RKE I ++A ++ +D
Sbjct: 668 LTDLDSAEQVFDLLMGNDVAPRKEFISSSAATLDRSRID 706
Score = 142 (55.0 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 74 KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS--DPEKNQY 131
K R+GTR+R+W D+Q+F + + + R R+ AFL P LTI +R E D
Sbjct: 193 KSRRGTRVRYWADRQIFLKDAKLSLDNLHQRARQTAFLVPGLTIVVRDEFGLGDGGSKGE 252
Query: 132 NEYFFAGGLEEYVQWLNTDKKPLHDVVGF 160
+ F GG+ E+ ++L D+ P+ DV+ F
Sbjct: 253 ESFRFDGGISEFCEFLAGDR-PVCDVLRF 280
>UNIPROTKB|Q89M38 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
EMBL:BA000040 GenomeReviews:BA000040_GR GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 OMA:GFIQSYC TIGRFAMs:TIGR01055 HSSP:P06982
RefSeq:NP_770995.1 ProteinModelPortal:Q89M38 GeneID:1052126
KEGG:bja:bll4355 PATRIC:21192268
BioCyc:BJAP224911:GJEJ-4381-MONOMER Uniprot:Q89M38
Length = 681
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 202/536 (37%), Positives = 294/536 (54%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS LEV V R Y + RG P L + +++ R+GTR+RF PD +F
Sbjct: 157 NALSSLLEVEVARSQKLYRMTFERGHPKGKLE-DLGKINN--RRGTRVRFKPDTDIFGAK 213
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIA-------LRKEDSDPEKNQYNEYFFAGGLEEYVQW 146
F + R A+L + I L+ D P + ++ F GGL++Y+
Sbjct: 214 AAFKPQRLFKMTRSKAYLFGGVEIRWNCAPELLKGIDDVPAEATFH---FPGGLKDYLAA 270
Query: 147 -LNTDKKPLHDVVGFRKDVDGI--TIDLALQWCSDAYSDTMLG-YANSIRTIDGGTHIEG 202
++ D D+ + +G + A+ W +DA D L Y N++ T DGGTH G
Sbjct: 271 AIHADTLVHPDIFSGKSGRNGAHGACEWAVAWTADA--DGFLSSYTNTVPTPDGGTHESG 328
Query: 203 VKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 262
++++L R L ++ K + S++ E V G ++SV V PEF+GQTK RL E
Sbjct: 329 LRSALLRGLKDHAERVGQGK-RASSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAE 387
Query: 263 VRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLP 322
+++V+Q++++ +L +P+ R K+ + LP
Sbjct: 388 AQRIVEQAMKDPFDHWLSGNPNQANKLLDFVIDRAEERLRRRQEKETAR-KTAGKKLRLP 446
Query: 323 GKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKN 382
GKLADCS E SE+FIVEGDSAGGSAKQ RDR+ QA+LPLRGKILNV + + N
Sbjct: 447 GKLADCSDAGTEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASAGKDKLTAN 506
Query: 383 EEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDE 442
++ +L++A+G G + +++E LRY +III+TDADVDGAHI +LL+TFFYR L DE
Sbjct: 507 AQLSDLVQAIGCGTLAQ-YREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLIDE 565
Query: 443 GCIYVGVPPLYKVERGKQVQYCYDDAELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWE 501
G +++ VPPLYK+ G + Y DDA + +KS F +NA + RFKGLGEMMP QL E
Sbjct: 566 GHLFLAVPPLYKLTHGSKSVYARDDAHKEALIKSEFNANAKVEVNRFKGLGEMMPAQLKE 625
Query: 502 TTLNPEQR-MLKQLVIEDAAEANV-VFSSLMGARVDTRKELIQNAANLVNLDHLDI 555
TT++P +R MLK +++ D + LMG + + R I + A N D LD+
Sbjct: 626 TTMDPAKRTMLKVVLLADDRDTTADSVERLMGTKAEARFAFISDKAEFANEDLLDV 681
>TIGR_CMR|SO_3899 [details] [associations]
symbol:SO_3899 "DNA topoisomerase IV, B subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 HSSP:P06982 OMA:QARDKEF
RefSeq:NP_719430.1 ProteinModelPortal:Q8EAK3 SMR:Q8EAK3
GeneID:1171539 KEGG:son:SO_3899 PATRIC:23527480 Uniprot:Q8EAK3
Length = 628
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 179/524 (34%), Positives = 269/524 (51%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS +EVTV RDG Y + G V L V + GTR+ FWPD F +
Sbjct: 120 NALSRRVEVTVRRDGQVYDIAFENGFKVEELK--VTGTCGRRNTGTRVHFWPDTSYFDSP 177
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-- 151
F ++ + +R A L P L I + + N+ +E+++ GL +Y++ D
Sbjct: 178 -NFSNSKLIYLLRAKAVLCPGLRIKFTNKHT----NEVHEWYYESGLTDYLKAAVGDNIM 232
Query: 152 KPLHDVVG-FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 210
P +G F+ ++ D A+ W + Y N I T GGTH+ G + L +
Sbjct: 233 LPEEPFIGSFKGQIEAA--DWAITWLPEGGESINESYVNLIPTPLGGTHVNGFRQGLLES 290
Query: 211 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 270
+ + + + I LS E + + I+SV++ +P+F GQTK +L + + V
Sbjct: 291 MREFCEFRNLIP-RGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSSAFVSGI 349
Query: 271 VQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSS 330
V++ + +L + ++ V +K V +LPGKL DCS
Sbjct: 350 VRDAFSLWLNSNTELAESLAEMCINNAQKRLKAAKK---VARKKVTSGPALPGKLTDCSG 406
Query: 331 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 390
P E+F+VEGDSAGGSAKQ RDR FQAI+PLRGKILN D + + ++E+ ++
Sbjct: 407 QDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISV 466
Query: 391 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 450
A+G D + LRY KI IL DAD DG HI TLL F ++ + L ++G +Y+ +P
Sbjct: 467 AIGCDPDSNDISE--LRYGKICILADADSDGLHIATLLCALFLKHYRVLVEQGHVYIAMP 524
Query: 451 PLYKVERGKQVQYCYDDAELKKVKSSFPS-NALYSIQ--RFKGLGEMMPVQLWETTLNPE 507
PL++++ GK V Y DDAE + V + N +Q RFKGLGEM P+QL ETT++P
Sbjct: 525 PLFRIDIGKDVYYALDDAEKEGVLDRINAENKKGKVQVTRFKGLGEMNPLQLRETTMDPN 584
Query: 508 QRMLKQLVIEDAAEANVVFSSLMGA-RVDTRKELIQNAANLVNL 550
R L QL I+DA E + + L+ R RK +++ ++ L
Sbjct: 585 TRRLVQLTIDDAEETDSLMDMLLAKKRSPDRKNWLEDKGDMAVL 628
>UNIPROTKB|A6VD80 [details] [associations]
symbol:parE "DNA topoisomerase IV, B subunit"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005737 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 RefSeq:YP_001351015.1
ProteinModelPortal:A6VD80 SMR:A6VD80 STRING:A6VD80 GeneID:5355906
KEGG:pap:PSPA7_5696 PATRIC:19832877 OMA:QARDKEF
BioCyc:PAER381754:GHMY-5702-MONOMER Uniprot:A6VD80
Length = 629
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 175/524 (33%), Positives = 267/524 (50%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS +EV V RD EY ++ G T L V+ + GT + FWPD + F +A
Sbjct: 119 NALSTRVEVRVKRDANEYRMTFADGFKDTDL--EVIGTVGRRNTGTSVHFWPDPKYFDSA 176
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 153
+F + + ++ A L P L++ D + E+ F GL Y+ +
Sbjct: 177 -KFSVSRLKHVLKAKAVLCPGLSVVFE----DKNTGERVEWHFEDGLRSYLTDAVAELPR 231
Query: 154 LHDVVGFRKDVDGI--TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 211
L D F +++G + AL W + Y N I T GGTH+ G++ L +
Sbjct: 232 LPDEP-FCGNLEGSKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAM 290
Query: 212 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 271
+ + + + + L+ E V E + ++S+++ P+F GQTK RL + E V V
Sbjct: 291 REFCE-FRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVV 349
Query: 272 QEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSST 331
++ + +L H ++ V +K + + +LPGKLADC+
Sbjct: 350 KDAFSLWLNEHAEIGLQLAELAISNAGRRLKAGKK---VERKKITQGPALPGKLADCAGQ 406
Query: 332 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 391
P +E+F+VEGDSAGGSAKQ RD+ FQAI+PLRGKILN D + ++E+ ++ A
Sbjct: 407 EPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVA 466
Query: 392 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 451
+G+ D + LRY KI IL DAD DG HI TLL F R+ + L + G +YV +PP
Sbjct: 467 IGVDPGASDLAQ--LRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPP 524
Query: 452 LYKVERGKQVQYCYDDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPE 507
LY+++ GK + Y D+AE L+++ + + RFKGLGEM P+QL ETT++P
Sbjct: 525 LYRIDLGKDIYYALDEAERDGILERLAAE-KKRGKPQVTRFKGLGEMNPLQLRETTMDPN 583
Query: 508 QRMLKQLVIEDAAEANVVFSSLMGA-RVDTRKELIQNAANLVNL 550
R L QL +EDA + L+ R RK +++ NL +
Sbjct: 584 TRRLVQLTLEDATGTLEIMDMLLAKKRAGDRKSWLESKGNLAEV 627
>TIGR_CMR|SPO_1253 [details] [associations]
symbol:SPO_1253 "DNA topoisomerase IV, B subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 OMA:GFIQSYC TIGRFAMs:TIGR01055
RefSeq:YP_166498.1 ProteinModelPortal:Q5LU07 GeneID:3192730
KEGG:sil:SPO1253 PATRIC:23375809 Uniprot:Q5LU07
Length = 652
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 181/533 (33%), Positives = 284/533 (53%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLT-CHVLPVDSKDRQGTRIRFWPDKQVFTT 92
NALS+S+ V V RD + Y Q++SRG P+ + P +R+GT + F D+++F
Sbjct: 133 NALSDSMVVQVARDKLLYEQRFSRGLPLGPIQQIGAAP----NRRGTTVTFHADEEIFGH 188
Query: 93 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWL----N 148
+F + IR A+L + I + D E + F GGL +Y++ +
Sbjct: 189 H-RFKPARLFKSIRSKAYLFSGVEIRWKSAIDDGETPTEATFHFPGGLADYLKETLGKAS 247
Query: 149 T-DKKPLHDVVGFRK--DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 205
T ++P V F + + G ++ A+ W + + + Y N++ T +GGTH G +
Sbjct: 248 TYAEQPFAGTVDFTEKFNTPG-KVEWAINW-TPSRDGFIQSYCNTVPTPEGGTHEAGFWS 305
Query: 206 SLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRK 265
++ + + + G+ K I+ + + G ++S + PEF GQTK RL E ++
Sbjct: 306 AILKGIRAYGELISNKKAAQITR--DDLLTGGCALVSCFIREPEFVGQTKDRLATVEAQR 363
Query: 266 VVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKL 325
+V+ +V+++ +L ++K+ + LPGKL
Sbjct: 364 LVEGAVRDHFDNWLAADTK-SAGAILDFLVLRAEERIRRRQEKETQRKTATKKLRLPGKL 422
Query: 326 ADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEI 385
DCS+T+ E +E+FIVEGDSAGGSAK RDR+ QA+LPLRGKILNV + + N+EI
Sbjct: 423 VDCSATSREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKLGSNQEI 482
Query: 386 QNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCI 445
+L +ALG+G+ G F + LRY KIII+TDADVDGAHI LL+TFF+ + + D G +
Sbjct: 483 SDLTQALGVGL-GTRFNVDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDTGHL 541
Query: 446 YVGVPPLYKVERGKQVQYCYDDAELKK-VKSSFPSNALYSIQRFKGLGEMMPVQLWETTL 504
Y+ PPLY++ +G + YC D+AE + + + RFKGLGEM L +TT+
Sbjct: 542 YLACPPLYRLTQGAKRVYCLDEAERDEWLAKGLGGKGKIDVSRFKGLGEMDAKDLKDTTM 601
Query: 505 NPEQRMLKQLVIED--AAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 555
NPE R L ++ I++ E + LMG + + R + IQ A V + LD+
Sbjct: 602 NPETRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQYIQENARFV--EELDV 652
>UNIPROTKB|Q9KPD9 [details] [associations]
symbol:VC_2431 "Topoisomerase IV, subunit B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005737 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 HSSP:P06982 OMA:GNVCVAR
PIR:G82078 RefSeq:NP_232061.1 ProteinModelPortal:Q9KPD9 SMR:Q9KPD9
DNASU:2612973 GeneID:2612973 KEGG:vch:VC2431 PATRIC:20083881
GO:GO:0009340 Uniprot:Q9KPD9
Length = 626
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 177/522 (33%), Positives = 264/522 (50%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS+ +EV V RDG Y + G VT LT V + GT + FWPD + F +
Sbjct: 120 NALSKRVEVAVRRDGQVYEIAFEHGDKVTELT--VTGTCGRRNTGTSVHFWPDTKYFDSP 177
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW--LNTDK 151
F + + +R A L P L I +D N + + + GL++Y+
Sbjct: 178 -NFSVSRLINNLRAKAVLCPGLEIIF----TDKVNNNEHRWLYEDGLKDYLAEGVKGYTL 232
Query: 152 KPLHDVVG-FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 210
P G F + T A+ W + Y N I T GGTH+ G++ L
Sbjct: 233 LPEEPFTGEFTAQTEAAT--WAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDA 290
Query: 211 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 270
+ + + + + + L+GE V + ++S+++ +P+F GQTK RL + + V
Sbjct: 291 MREFCE-FRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGV 349
Query: 271 VQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSS 330
V++ + +L P + VR+K + +LPGKL DC+
Sbjct: 350 VKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKV--VRKK-IASGPALPGKLTDCTV 406
Query: 331 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 390
+E+F+VEGDSAGGSAKQ RDR FQA++PLRGKILN + ++E+ ++
Sbjct: 407 QDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466
Query: 391 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 450
ALG+ ++ EALRY K+ IL DAD DG HI TLL F R+ + L G +YV +P
Sbjct: 467 ALGIDPDSDNL--EALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMP 524
Query: 451 PLYKVERGKQVQYCYDDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQR 509
PLY+++ GK+V Y DD E + V A ++QRFKGLGEM P+QL ETT++P R
Sbjct: 525 PLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584
Query: 510 MLKQLVIEDAAEANVVFSSLMGA-RVDTRKELIQNAANLVNL 550
L QL I+DA + + L+G R D R+ +Q ++ +
Sbjct: 585 RLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQRNGDMAEV 626
>TIGR_CMR|VC_2431 [details] [associations]
symbol:VC_2431 "topoisomerase IV, subunit B" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0007059 "chromosome segregation" evidence=ISS]
[GO:0009340 "DNA topoisomerase IV complex" evidence=ISS]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
Gene3D:3.40.50.670 KO:K02622 ProtClustDB:PRK05559
TIGRFAMs:TIGR01055 HSSP:P06982 OMA:GNVCVAR PIR:G82078
RefSeq:NP_232061.1 ProteinModelPortal:Q9KPD9 SMR:Q9KPD9
DNASU:2612973 GeneID:2612973 KEGG:vch:VC2431 PATRIC:20083881
GO:GO:0009340 Uniprot:Q9KPD9
Length = 626
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 177/522 (33%), Positives = 264/522 (50%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS+ +EV V RDG Y + G VT LT V + GT + FWPD + F +
Sbjct: 120 NALSKRVEVAVRRDGQVYEIAFEHGDKVTELT--VTGTCGRRNTGTSVHFWPDTKYFDSP 177
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW--LNTDK 151
F + + +R A L P L I +D N + + + GL++Y+
Sbjct: 178 -NFSVSRLINNLRAKAVLCPGLEIIF----TDKVNNNEHRWLYEDGLKDYLAEGVKGYTL 232
Query: 152 KPLHDVVG-FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 210
P G F + T A+ W + Y N I T GGTH+ G++ L
Sbjct: 233 LPEEPFTGEFTAQTEAAT--WAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDA 290
Query: 211 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 270
+ + + + + + L+GE V + ++S+++ +P+F GQTK RL + + V
Sbjct: 291 MREFCE-FRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGV 349
Query: 271 VQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSS 330
V++ + +L P + VR+K + +LPGKL DC+
Sbjct: 350 VKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKV--VRKK-IASGPALPGKLTDCTV 406
Query: 331 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 390
+E+F+VEGDSAGGSAKQ RDR FQA++PLRGKILN + ++E+ ++
Sbjct: 407 QDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466
Query: 391 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 450
ALG+ ++ EALRY K+ IL DAD DG HI TLL F R+ + L G +YV +P
Sbjct: 467 ALGIDPDSDNL--EALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMP 524
Query: 451 PLYKVERGKQVQYCYDDAELKKVKSSFPSN-ALYSIQRFKGLGEMMPVQLWETTLNPEQR 509
PLY+++ GK+V Y DD E + V A ++QRFKGLGEM P+QL ETT++P R
Sbjct: 525 PLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584
Query: 510 MLKQLVIEDAAEANVVFSSLMGA-RVDTRKELIQNAANLVNL 550
L QL I+DA + + L+G R D R+ +Q ++ +
Sbjct: 585 RLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQRNGDMAEV 626
>TIGR_CMR|CBU_0064 [details] [associations]
symbol:CBU_0064 "DNA topoisomerase IV, B subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 RefSeq:NP_819117.2
ProteinModelPortal:Q83F84 PRIDE:Q83F84 GeneID:1207934
KEGG:cbu:CBU_0064 PATRIC:17928803 OMA:GNVCVAR
BioCyc:CBUR227377:GJ7S-66-MONOMER Uniprot:Q83F84
Length = 641
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 178/528 (33%), Positives = 275/528 (52%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDS--KDRQGTRIRFWPDKQVFT 91
NALS+ L V V +DG Y ++ G+ + L PV S K GT I FWPD F
Sbjct: 131 NALSKKLTVQVKKDGKIYQMDFAHGEKTSKLR----PVGSCNKSESGTSIHFWPDSHYFD 186
Query: 92 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 151
+ ++F + + +R A L P LT+ E++ Q ++++A GL+ Y+ D+
Sbjct: 187 S-VKFGVSALKHTMRAKAVLCPGLTVHFIDENT----GQRLQWYYAEGLKTYLADSLRDR 241
Query: 152 KPLHDV--VG-FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT 208
+ L + VG F + + D AL W + Y N I T GGTH+ G++ L
Sbjct: 242 ERLPEEPWVGSFSGETE--KADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNGLRTGLL 299
Query: 209 RTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVD 268
+ + K + +++ L+ E + E ++SV++ P+F GQTK RL + + V
Sbjct: 300 EAMREFCEIHKLLP-RNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQSAVFVS 358
Query: 269 QSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADC 328
V++ + +L + ++ + +K V +LPGKLADC
Sbjct: 359 GVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLRMSKK---IERKKVTTGPALPGKLADC 415
Query: 329 SSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 388
+ P + E+F+VEGDSAGGSAKQ RD+ FQAI+PLRGKILN D + ++ + ++
Sbjct: 416 ILSDPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQTVHDI 475
Query: 389 IRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVG 448
A+ +GV + E LRY KI IL DAD DG HI TLL F ++ L G +YV
Sbjct: 476 --AIAIGVDPDSSNLEGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHVYVA 533
Query: 449 VPPLYKVERGKQVQYCYDDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTL 504
+PPLY+++ GK V Y D+ E L ++K+ A+ +IQRFKGLGEM P QL ETT+
Sbjct: 534 MPPLYRIDVGKDVFYALDEEEKEGVLDRIKAEKLKGAI-NIQRFKGLGEMNPSQLRETTM 592
Query: 505 NPEQRMLKQLVIEDAAEANVVFSSLMGA-RVDTRKELIQNAANLVNLD 551
NP+ R L +L ++ + + L+ R R++ ++ NL ++
Sbjct: 593 NPDTRHLVRLTVKSKDKTEQLLDMLLAKKRAADRRDWLEKKGNLAEVE 640
>UNIPROTKB|P20083 [details] [associations]
symbol:parE species:83333 "Escherichia coli K-12"
[GO:0030541 "plasmid partitioning" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0007062 "sister
chromatid cohesion" evidence=IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0046677
"response to antibiotic" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046677 GO:GO:0006261 EMBL:U28377
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0007062 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000075154 GO:GO:0030541 KO:K02622 ProtClustDB:PRK05559
EMBL:M58409 EMBL:L22026 PIR:D65090 RefSeq:NP_417502.1
RefSeq:YP_491222.1 PDB:1S14 PDB:1S16 PDB:3FV5 PDBsum:1S14
PDBsum:1S16 PDBsum:3FV5 ProteinModelPortal:P20083 SMR:P20083
DIP:DIP-10441N IntAct:P20083 MINT:MINT-1223307 PRIDE:P20083
EnsemblBacteria:EBESCT00000001166 EnsemblBacteria:EBESCT00000016957
GeneID:12933399 GeneID:947501 KEGG:ecj:Y75_p2956 KEGG:eco:b3030
PATRIC:32121470 EchoBASE:EB0681 EcoGene:EG10687 OMA:GFIQSYC
BioCyc:EcoCyc:EG10687-MONOMER BioCyc:ECOL316407:JW2998-MONOMER
BindingDB:P20083 EvolutionaryTrace:P20083 Genevestigator:P20083
HAMAP:MF_00938 TIGRFAMs:TIGR01055 Uniprot:P20083
Length = 630
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 173/523 (33%), Positives = 268/523 (51%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS+ +EV V RDG Y+ + G+ V L V+ K GT + FWPD+ F +
Sbjct: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDL--QVVGTCGKRNTGTSVHFWPDETFFDSP 177
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT-DKK 152
+F + + ++ A L P + I + E ++ E+ + L E V L T +K
Sbjct: 178 -RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEK 236
Query: 153 PLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 212
P + F D + + D AL W + Y N I T+ GGTH+ G++ L +
Sbjct: 237 PF--IGNFAGDTEAV--DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292
Query: 213 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 272
+ + + + + LS E + + ++SV++ +P+F GQTK RL + + V V+
Sbjct: 293 EFCEY-RNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVK 351
Query: 273 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 332
+ L L+ +V VR+K + +LPGKLADC++
Sbjct: 352 DAFI--LWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKK-LTSGPALPGKLADCTAQD 408
Query: 333 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 392
+E+F+VEGDSAGGSAKQ RDR +QAI+PL+GKILN + ++E+ ++ A+
Sbjct: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468
Query: 393 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 452
G+ +D + LRY KI IL DAD DG HI TLL F ++ + L G +YV +PPL
Sbjct: 469 GIDPDSDDLSQ--LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPL 526
Query: 453 YKVERGKQVQYCYDDAELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRML 511
Y+++ GK+V Y + E + V ++QRFKGLGEM P+QL ETTL+P R L
Sbjct: 527 YRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586
Query: 512 KQLVI--EDAAEANVVFSSLMGA-RVDTRKELIQNAANLVNLD 551
QL I ED + + L+ R + R+ +Q ++ ++
Sbjct: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629
>TAIR|locus:2146658 [details] [associations]
symbol:GYRB3 "DNA GYRASE B3" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0003916 "DNA topoisomerase
activity" evidence=IGI] InterPro:IPR001005 InterPro:IPR001241
InterPro:IPR013506 Pfam:PF00204 SMART:SM00433 SMART:SM00717
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005694
GO:GO:0007059 GO:GO:0003682 GO:GO:0006261 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 eggNOG:COG0187 KO:K02470 EMBL:AY074291
EMBL:AY091322 EMBL:AY519549 IPI:IPI00536772 RefSeq:NP_196031.2
UniGene:At.33174 ProteinModelPortal:Q8VY11 SMR:Q8VY11
EnsemblPlants:AT5G04110.1 GeneID:830289 KEGG:ath:AT5G04110
TAIR:At5g04110 InParanoid:Q8VY11 Genevestigator:Q8VY11
Uniprot:Q8VY11
Length = 546
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 138/252 (54%), Positives = 170/252 (67%)
Query: 111 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 170
L ++T++L ED+DP K EY +A GL E+V WLN DKKPLHDV+GFRK+++G TI+
Sbjct: 17 LRVQITVSLEMEDNDPNK----EYLYAKGLSEFVTWLNADKKPLHDVLGFRKEINGTTIN 72
Query: 171 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 230
+ALQWC D YS+ +LGYAN IRT+DGGT+I+GVKAS+TRTLNSL +KSK V+DKDI +
Sbjct: 73 IALQWCVDGYSNKILGYANGIRTMDGGTYIDGVKASITRTLNSLVEKSKLVEDKDIIFTE 132
Query: 231 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXX 290
EHV EGLTCI+SV VP PEFEGQT+ RLGNP VR++VDQSVQE L E ELHPDV
Sbjct: 133 EHVMEGLTCIVSVIVPKPEFEGQTQ-RLGNPNVREIVDQSVQECLMESFELHPDVFESIM 191
Query: 291 XXXXXXXXXXXXXXXXXXXVRQKSVLRS---SSLPGKLADCSSTTPEESEIFIVEGDSAG 347
+SV S+P KL + SS T SE FI G S+G
Sbjct: 192 SKSYNAYKTDLAVKRARDVYSSESVAMVCAIESIPMKLTNSSSET---SETFIGRGVSSG 248
Query: 348 GSAKQGRDRRFQ 359
G+AK DR F+
Sbjct: 249 GAAKHDSDRCFK 260
>UNIPROTKB|Q3KL33 [details] [associations]
symbol:gyrB_2 "DNA gyrase subunit B" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
HOGENOM:HOG000075156 ProtClustDB:PRK05559 RefSeq:YP_328487.1
ProteinModelPortal:Q3KL33 STRING:Q3KL33 GeneID:3687725
KEGG:cta:CTA_0718 PATRIC:32023360 OMA:VFESQTK
BioCyc:CTRA315277:GI4C-739-MONOMER Uniprot:Q3KL33
Length = 605
Score = 418 (152.2 bits), Expect = 7.8e-46, Sum P(2) = 7.8e-46
Identities = 118/388 (30%), Positives = 185/388 (47%)
Query: 170 DLALQWC-SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 228
DLA + ++ S+ + N T DGGTH+ K + + +N K+
Sbjct: 234 DLAFLFSHTETSSEQYFSFVNGQETTDGGTHLVAFKEGIVKGVNEFFGKN---------F 284
Query: 229 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXX 288
S + +REGL I++++ +P FE QTK +LGN +R + + V+E + L+ +P
Sbjct: 285 SSQDIREGLAGCIAIKIASPIFESQTKNKLGNTNIRAELAKRVKEAVLSSLKKNPSSAER 344
Query: 289 XXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADC------SSTTPEESEIFIVE 342
++ K +P KL DC +S + S IFI E
Sbjct: 345 IQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIP-KLRDCKFHLTDNSLYGKNSSIFITE 403
Query: 343 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 402
G+SA S R+ QA+ LRGK +NV E +YKN+E+ L ALGL +D
Sbjct: 404 GESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDELFYLTTALGLH---KD-S 459
Query: 403 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 462
+ LRY+++I+ TDADVDG HIR L++TFF + L +++ PL+KV
Sbjct: 460 LQNLRYNQVILATDADVDGMHIRNLMITFFLKTFLPLVASNHLFILETPLFKVRHKDATF 519
Query: 463 YCYDDAE-LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 521
YCY + E L ++ + I RFKGLGE+ P + +++ + + R L + + D
Sbjct: 520 YCYSEEEKLSTIEHIGKKESSLEITRFKGLGEISPKE-FKSFIGADMR-LTPVSLPDTET 577
Query: 522 ANVVFSSLMGARVDTRKE-LIQN-AANL 547
+ + MG RK +I+N NL
Sbjct: 578 LDTLLQFYMGKNTKERKLFIIENLVTNL 605
Score = 81 (33.6 bits), Expect = 7.8e-46, Sum P(2) = 7.8e-46
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS+ V R+ +S+G + H ++D GT + F PD ++F
Sbjct: 121 NALSQHFSVRSVRNKKFLKASFSKG-----ILLHTEQGATQDPDGTEVVFSPDHELFEN- 174
Query: 94 IQFDHNTIAGRIRELAFLNPKLTIALRKE 122
F + +IR+ +L+P LTI E
Sbjct: 175 FSFQVEFLKKKIRQYTYLHPGLTIIYNGE 203
>UNIPROTKB|Q8A3C1 [details] [associations]
symbol:BT_3033 "DNA topoisomerase IV subunit B"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AE015928
GenomeReviews:AE015928_GR GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075156 KO:K02622
ProtClustDB:PRK05559 HSSP:P06982 OMA:VFESQTK RefSeq:NP_811945.1
ProteinModelPortal:Q8A3C1 GeneID:1074020 KEGG:bth:BT_3033
PATRIC:21061047 BioCyc:BTHE226186:GJXV-3097-MONOMER Uniprot:Q8A3C1
Length = 625
Score = 410 (149.4 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
Identities = 127/399 (31%), Positives = 184/399 (46%)
Query: 166 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 225
G I++A Y + + N T GGTH K + RT+ K+ D
Sbjct: 243 GEDIEIAFTHTGQ-YGEEYYSFVNGQHTTQGGTHQSAFKEHIARTIKEFFNKNMDYTD-- 299
Query: 226 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE-------VRKVVDQSVQEYLTEY 278
+R GL I+V V P FE QTKT+LG+ V K V ++ + +
Sbjct: 300 -------IRNGLVAAIAVNVEEPIFESQTKTKLGSTNMTPGGVTVNKYVGDFIKLEVDNF 352
Query: 279 LELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPG-KLADCSS--TTP-- 333
L + DV R+++ + ++L KL DC P
Sbjct: 353 LHKNADVAEVMQQKIQESEKERKAIAGVTKLARERA--KKANLHNRKLRDCRIHLNDPKG 410
Query: 334 ----EESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 389
E+S IFI EGDSA GS + RD QA+ LRGK LN + +Y+NEE NL+
Sbjct: 411 KGMEEDSCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLTKKVVYENEEF-NLL 469
Query: 390 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 449
+A L + ED E LRY+K+I+ TDADVDG HIR LL+TFF ++ L +G +Y+
Sbjct: 470 QA-ALNI--ED-GIEGLRYNKVIVATDADVDGMHIRLLLITFFLQFFPDLIKKGHVYILQ 525
Query: 450 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR 509
PL++V K+ YCY + E + N I RFKGLGE+ P + ++ + + R
Sbjct: 526 TPLFRVRNKKKTVYCYSEDERVNAINELSPNP--EITRFKGLGEISPDE-FKHFIGKDMR 582
Query: 510 MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV 548
L+Q+ + + MG R+ I + NLV
Sbjct: 583 -LEQVTLRKTDAVKELLEFYMGKNTMERQNFIID--NLV 618
Score = 85 (35.0 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
Identities = 28/84 (33%), Positives = 38/84 (45%)
Query: 34 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 93
NALS EV +RDG +S+G T +T D+++ GT I F PD +F
Sbjct: 132 NALSSRFEVRSYRDGKVRIATFSKGNLQTDVT-----QDTEEDNGTFIFFEPDNTLFVNY 186
Query: 94 IQFDHNTIAGRIRELAFLNPKLTI 117
F I +R +LN L I
Sbjct: 187 C-FKPEFIETMLRNYTYLNTGLAI 209
>DICTYBASE|DDB_G0279737 [details] [associations]
symbol:top2mt "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;IC;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006261 "DNA-dependent
DNA replication" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 dictyBase:DDB_G0279737 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 EMBL:AAFI02000032 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:D82024 PIR:T30577 RefSeq:XP_641531.1 ProteinModelPortal:P90520
STRING:P90520 EnsemblProtists:DDB0214907 GeneID:8622204
KEGG:ddi:DDB_G0279737 OMA:MQDRRER ProtClustDB:PTZ00108
Uniprot:P90520
Length = 1284
Score = 330 (121.2 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 127/507 (25%), Positives = 219/507 (43%)
Query: 34 NALSESLEV-TVWRD-GMEYHQKYS-----RGKPVTTLTCHVLPVDSKDRQGTRIRFWPD 86
N S+ V TV + G +Y Q++S R +P+ T P+ + T+I F PD
Sbjct: 263 NIFSKEFTVETVDKSSGKKYFQRWSNNMGDRSEPIIT------PIGEGESDYTKITFKPD 316
Query: 87 KQVFTTAIQFDHNTIA---GRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEY 143
+ F +D N + R+ ++A N +L + L + ++ YN F ++ Y
Sbjct: 317 LEKFKIKSLWDDNILQLMERRLYDIAGCNTELMVTL-----NGKRLNYN---FQSYVKLY 368
Query: 144 VQWLNTDKKPLHDVVGFRKDVDGITIDLALQW-----CSDAYSDTMLGYANSIRTIDGGT 198
LN K + +R++ +++ +W S+ T + + NSI T+ GGT
Sbjct: 369 EHHLNNSTKREDNEEQYREESFEFG-EISPRWKIGIGLSETGQFTQVSFVNSINTVKGGT 427
Query: 199 HIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRL 258
H+ + + R + G+K K K D+ + +++ L ++ V NP F+ Q+K L
Sbjct: 428 HVNFLADQIVRYV---GEKLKK-KHSDLEIRPMNIKHHLALFVNCLVDNPSFDSQSKETL 483
Query: 259 GN-PEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLR 317
P + + + L ++++ + RQ
Sbjct: 484 TTKPMLFGSTPEIPESLLAQFVKNSKIIERVAGWALMKQKADLIHSTSG----RQSKTTL 539
Query: 318 SSSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNV 371
S+ KL D + +E + I EGDSA A G R + PLRGK+LNV
Sbjct: 540 IKSI-SKLDDANWAGGLKSKECTLIITEGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNV 598
Query: 372 ERKDEAAMYKNEEIQNLIRALGLGVKGE---DFKKEALRYHKIIILTDADVDGAHIRTLL 428
+ NEEI NL LGL K D E LRY +++I+ D D DG+HI+ L+
Sbjct: 599 RDVASKQLLSNEEINNLTTILGLSHKNSYDTDESMEDLRYGRVMIMADQDHDGSHIKGLV 658
Query: 429 LTFFYRYQKTLFDEGCIYVGVPPLYKVERGK-QVQYCYDDAELKKVKSSFPSNAL--YSI 485
+ F + + L G + V P+ K + Q + + + +K + + S+ L Y+I
Sbjct: 659 MNFIHYFWPNLLKRGFLVEFVTPIIKATKSSTQKKSFFTIKDYEKWRETISSDQLKQYTI 718
Query: 486 QRFKGLGEMMPVQLWETTLNPEQRMLK 512
+ +KGLG + E N ++ ++K
Sbjct: 719 KYYKGLGTSTSAEAKEYFSNLDKHVIK 745
>UNIPROTKB|Q8EYL9 [details] [associations]
symbol:LA_4194 "DNA gyrase subunit B" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 EMBL:AE010300 GenomeReviews:AE010300_GR
HSSP:P06786 RefSeq:NP_714374.1 ProteinModelPortal:Q8EYL9
GeneID:1153536 KEGG:lil:LA_4194 PATRIC:22389227
HOGENOM:HOG000040411 OMA:EATIESK ProtClustDB:CLSK575166
BioCyc:LINT189518:GJBB-3320-MONOMER Uniprot:Q8EYL9
Length = 711
Score = 307 (113.1 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 115/452 (25%), Positives = 204/452 (45%)
Query: 66 CHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT-IAGRIRELAFLNPKLT--IALRKE 122
C++L D D+ ++ +++ A + DH T + + F N ++ + L K+
Sbjct: 218 CNLLTKDQIDKLSPLLKKTNMQELIEKASKEDHGTSVEFELNPKYFNNLDISFNVDLMKQ 277
Query: 123 D-SDPEKNQYN---EYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKD--VDGITIDLALQW 175
D ++ F G E+Y D+ H D+V ++ D G L L+
Sbjct: 278 YLQDIAMTNPGLEVQFVFKGKKEKYKFKKGLDEIFSHSDLVYYKMDYVAPGSASQLHLET 337
Query: 176 CSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK-DKDISLSGEH-- 232
+ L + NSI GG+ IE ++ R + + KKS+ V +K + S
Sbjct: 338 YLVIGQNKNLTWVNSIFAPQGGSAIEYLE---NRICDEVRKKSQIVALEKKLKTSSTRND 394
Query: 233 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXX 292
VR ++ R+ NP F+ Q K+ L N ++ + + +V ++L ++++
Sbjct: 395 VRNCFHMYVNARLLNPRFKSQDKSYLIN-DLNEDIRNAVDKHLDKFIK-------KTGLL 446
Query: 293 XXXXXXXXXXXXXXXXXVRQKSVLRSS--SLPGKLADCSSTTPEESEIFIVEGDSAGGSA 350
QK + ++S ++P + +F+ EGDSA
Sbjct: 447 EEIKLQMEKRTQLKAFEDAQKGLKKASRMNIPKLMPPTGKQGDPGRVLFVAEGDSAIAGL 506
Query: 351 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 410
+ R+ + + PLRGK LN + A NEE++N++ +GL + + + L Y K
Sbjct: 507 RPARNPKLHGLFPLRGKPLNCKGLSIAKAIANEELKNIVAIVGLPLDQKVKSLDELNYEK 566
Query: 411 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE-----RGKQVQYCY 465
+ I+TDAD DG IR+L+L+FFY Y LF+ G I++ PLY+V+ + K+ +C
Sbjct: 567 VSIITDADFDGYAIRSLMLSFFYEYWPELFELGFIHISSAPLYEVDVKFGDKKKETIFCI 626
Query: 466 DDAE----LKKVKSSFPSNALYSIQRFKGLGE 493
DD + +K+V+ + +R KGLGE
Sbjct: 627 DDKDYEDLIKRVEKG--GGEITRKKRNKGLGE 656
>UNIPROTKB|F1Q2M4 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 EMBL:AAEX03006463
Ensembl:ENSCAFT00000025539 Uniprot:F1Q2M4
Length = 1533
Score = 305 (112.4 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 100/370 (27%), Positives = 167/370 (45%)
Query: 185 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ + + T+ ++ + KK+K +++ V+ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYIADQIVTKLVDVVKKKNKG----GVAVKAHQVKNHMWIFVNA 366
Query: 244 RVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXX 303
+ NP F+ QTK + +V+ S + ++++
Sbjct: 367 LIENPTFDSQTKENM-TLQVKSF--GSTCQLSEKFIKAATGCGIVESILNWVKFKAQIQL 423
Query: 304 XXXXXXVRQKSVLRSSSLPGKLADCSST---TPEESEIFIVEGDSA-----GGSAKQGRD 355
V+ R +P KL D + E + + EGDSA G GRD
Sbjct: 424 NKKCSAVKHN---RIKGIP-KLDDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRD 479
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK----GEDFKKEALRYHKI 411
+ + PLRGKILNV + +N EI N+I+ +GL K ED K LRY KI
Sbjct: 480 K--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYDDEDSLK-TLRYGKI 536
Query: 412 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK 471
+I+TD D DG+HI+ LL+ F + +L + + P+ KV + KQ Y E +
Sbjct: 537 MIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFE 596
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRML--KQLVIEDAAEANVVFSSL 529
+ KSS P++ + ++ +KGLG + E N ++ + K ED A ++ FS
Sbjct: 597 EWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFANMKRHRIQFKYSGPEDDAAISLAFSK- 655
Query: 530 MGARVDTRKE 539
++D RKE
Sbjct: 656 --KQIDDRKE 663
>UNIPROTKB|J9PAY8 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 OMA:MFKQTWM
EMBL:AAEX03006463 Ensembl:ENSCAFT00000046104 Uniprot:J9PAY8
Length = 1541
Score = 305 (112.4 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 100/370 (27%), Positives = 167/370 (45%)
Query: 185 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ + + T+ ++ + KK+K +++ V+ + ++
Sbjct: 320 ISFVNSIATSKGGRHVDYIADQIVTKLVDVVKKKNKG----GVAVKAHQVKNHMWIFVNA 375
Query: 244 RVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXX 303
+ NP F+ QTK + +V+ S + ++++
Sbjct: 376 LIENPTFDSQTKENM-TLQVKSF--GSTCQLSEKFIKAATGCGIVESILNWVKFKAQIQL 432
Query: 304 XXXXXXVRQKSVLRSSSLPGKLADCSST---TPEESEIFIVEGDSA-----GGSAKQGRD 355
V+ R +P KL D + E + + EGDSA G GRD
Sbjct: 433 NKKCSAVKHN---RIKGIP-KLDDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRD 488
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK----GEDFKKEALRYHKI 411
+ + PLRGKILNV + +N EI N+I+ +GL K ED K LRY KI
Sbjct: 489 K--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYDDEDSLK-TLRYGKI 545
Query: 412 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK 471
+I+TD D DG+HI+ LL+ F + +L + + P+ KV + KQ Y E +
Sbjct: 546 MIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFE 605
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRML--KQLVIEDAAEANVVFSSL 529
+ KSS P++ + ++ +KGLG + E N ++ + K ED A ++ FS
Sbjct: 606 EWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFANMKRHRIQFKYSGPEDDAAISLAFSK- 664
Query: 530 MGARVDTRKE 539
++D RKE
Sbjct: 665 --KQIDDRKE 672
>MGI|MGI:98790 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003916 "DNA
topoisomerase activity" evidence=ISO] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IGI;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006200 "ATP catabolic process"
evidence=IGI;IDA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IDA] [GO:0006266
"DNA ligation" evidence=ISO] [GO:0006312 "mitotic recombination"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0007059 "chromosome segregation"
evidence=ISO;IMP;IDA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0008144 "drug binding" evidence=ISO] [GO:0008301
"DNA binding, bending" evidence=ISO] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0030261 "chromosome condensation" evidence=IMP] [GO:0030263
"apoptotic chromosome condensation" evidence=ISO] [GO:0040016
"embryonic cleavage" evidence=IMP] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0042826 "histone
deacetylase binding" evidence=ISO] [GO:0043065 "positive regulation
of apoptotic process" evidence=ISO] [GO:0043130 "ubiquitin binding"
evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0043566 "structure-specific DNA binding" evidence=ISO]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0045070 "positive regulation of viral genome replication"
evidence=ISO] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 MGI:MGI:98790 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0030261 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0071107 EMBL:AL591067 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:D12513 EMBL:U01915 IPI:IPI00122223 PIR:JS0703
RefSeq:NP_035753.2 UniGene:Mm.4237 ProteinModelPortal:Q01320
SMR:Q01320 IntAct:Q01320 STRING:Q01320 PhosphoSite:Q01320
PaxDb:Q01320 PRIDE:Q01320 Ensembl:ENSMUST00000068031 GeneID:21973
KEGG:mmu:21973 UCSC:uc007lid.1 GeneTree:ENSGT00390000016222
InParanoid:Q01320 OMA:MFKQTWM BindingDB:Q01320 ChEMBL:CHEMBL3586
ChiTaRS:TOP2A NextBio:301670 Bgee:Q01320 CleanEx:MM_TOP2A
Genevestigator:Q01320 GermOnline:ENSMUSG00000020914 Uniprot:Q01320
Length = 1528
Score = 269 (99.8 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 77/228 (33%), Positives = 114/228 (50%)
Query: 327 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 381
D S E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 445 DAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 502
Query: 382 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 437
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 503 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 561
Query: 438 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 497
+L + + P+ KV + KQ Y E ++ KSS P++ + ++ +KGLG
Sbjct: 562 SLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSSTPNHKKWKVKYYKGLGTSTSK 621
Query: 498 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKELIQN 543
+ E + ++ + K ED A ++ FS +VD RKE + N
Sbjct: 622 EAKEYFADMKRHRIQFKYSGPEDDAAISLAFSK---KQVDDRKEWLTN 666
Score = 85 (35.0 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V + L + KK K+K +++ V+ + ++
Sbjct: 310 ISFVNSIATSKGGRHVDYVADQIVSKLVDVVKK----KNKGGVAVKAHQVKNHMWIFVNA 365
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 366 LIENPTFDSQTKENM 380
>UNIPROTKB|P11388 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0040016
"embryonic cleavage" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IDA;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0048015 "phosphatidylinositol-mediated signaling"
evidence=NAS] [GO:0006260 "DNA replication" evidence=NAS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0005814 "centriole" evidence=IDA] [GO:0042826 "histone
deacetylase binding" evidence=IPI] [GO:0007059 "chromosome
segregation" evidence=IMP] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IDA] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0030263 "apoptotic chromosome condensation"
evidence=IDA] [GO:0019035 "viral integration complex" evidence=NAS]
[GO:0045070 "positive regulation of viral genome replication"
evidence=IMP] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0006266 "DNA ligation" evidence=IDA] [GO:0008144
"drug binding" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IDA] [GO:0005080 "protein kinase C
binding" evidence=IPI] [GO:0006281 "DNA repair" evidence=NAS]
[GO:0043130 "ubiquitin binding" evidence=IMP] [GO:0008301 "DNA
binding, bending" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=TAS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005737 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0042493 GO:GO:0000287 GO:GO:0008144
GO:GO:0007568 EMBL:CH471152 GO:GO:0043565 GO:GO:0006281
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006261
DrugBank:DB01204 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
DrugBank:DB00537 GO:GO:0048015 Gene3D:3.30.565.10 SUPFAM:SSF55874
DrugBank:DB01044 DrugBank:DB04967 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0043130 GO:GO:0009330 GO:GO:0070683 GO:GO:0000712
DrugBank:DB00445 GO:GO:0071107 DrugBank:DB00467 DrugBank:DB01137
DrugBank:DB00978 DrugBank:DB01059 DrugBank:DB01165 DrugBank:DB00487
DrugBank:DB00444 DrugBank:DB00997 DrugBank:DB00773 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 DrugBank:DB00276 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 EMBL:AC080112
KO:K03164 CTD:7153 HOVERGEN:HBG052998 EMBL:J04088 EMBL:AF071747
EMBL:AF071738 EMBL:AF071739 EMBL:AF071740 EMBL:AF071741
EMBL:AF071742 EMBL:AF071743 EMBL:AF071744 EMBL:AF071745
EMBL:AF071746 EMBL:AJ011741 EMBL:AJ011742 EMBL:AJ011743
EMBL:AJ011744 EMBL:AJ011745 EMBL:AJ011746 EMBL:AJ011747
EMBL:AJ011748 EMBL:AJ011749 EMBL:AJ011750 EMBL:AJ011751
EMBL:AJ011752 EMBL:AJ011753 EMBL:AJ011754 EMBL:AJ011755
EMBL:AJ011756 EMBL:AJ011757 EMBL:AJ011758 EMBL:AF285157
EMBL:AF285158 EMBL:BC140791 EMBL:AF285159 EMBL:AF069522
EMBL:AF064590 IPI:IPI00414101 IPI:IPI00478232 IPI:IPI00879004
IPI:IPI01011132 PIR:A40493 RefSeq:NP_001058.2 UniGene:Hs.156346
PDB:1LWZ PDB:1ZXM PDB:1ZXN PDB:4FM9 PDBsum:1LWZ PDBsum:1ZXM
PDBsum:1ZXN PDBsum:4FM9 ProteinModelPortal:P11388 SMR:P11388
DIP:DIP-33887N IntAct:P11388 MINT:MINT-98770 STRING:P11388
PhosphoSite:P11388 DMDM:13959709 UCD-2DPAGE:P11388 PaxDb:P11388
PRIDE:P11388 Ensembl:ENST00000423485 GeneID:7153 KEGG:hsa:7153
UCSC:uc002huq.3 GeneCards:GC17M038544 H-InvDB:HIX0013797
HGNC:HGNC:11989 HPA:CAB002448 HPA:HPA006458 HPA:HPA026773
MIM:126430 neXtProt:NX_P11388 PharmGKB:PA354 OrthoDB:EOG4KWJS0
BRENDA:5.99.1.3 BindingDB:P11388 ChEMBL:CHEMBL1806 DrugBank:DB00380
DrugBank:DB04576 DrugBank:DB01177 DrugBank:DB00218 DrugBank:DB01179
DrugBank:DB01208 DrugBank:DB00685 DrugBank:DB00385
EvolutionaryTrace:P11388 GenomeRNAi:7153 NextBio:27992
ArrayExpress:P11388 Bgee:P11388 CleanEx:HS_TOP2A
Genevestigator:P11388 GO:GO:0045870 Uniprot:P11388
Length = 1531
Score = 267 (99.0 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 75/228 (32%), Positives = 113/228 (49%)
Query: 327 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 381
D E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 503
Query: 382 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 437
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 504 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 562
Query: 438 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 497
+L + + P+ KV + KQ Y E ++ KSS P++ + ++ +KGLG
Sbjct: 563 SLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYKGLGTSTSK 622
Query: 498 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKELIQN 543
+ E + ++ + K ED A ++ FS ++D RKE + N
Sbjct: 623 EAKEYFADMKRHRIQFKYSGPEDDAAISLAFSK---KQIDDRKEWLTN 667
Score = 86 (35.3 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 185 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V + T+ ++ + KK+K +++ V+ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNKG----GVAVKAHQVKNHMWIFVNA 366
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 367 LIENPTFDSQTKENM 381
>UNIPROTKB|P41515 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:10029
"Cricetulus griseus" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0008301 "DNA binding,
bending" evidence=ISS] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0000287 GO:GO:0008301 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 PROSITE:PS50880 CTD:7153
HOVERGEN:HBG052998 EMBL:L04607 PIR:A44406 RefSeq:NP_001233667.1
ProteinModelPortal:P41515 SMR:P41515 GeneID:100689304
Uniprot:P41515
Length = 1526
Score = 265 (98.3 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 76/224 (33%), Positives = 112/224 (50%)
Query: 327 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 381
D S E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 445 DAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 502
Query: 382 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 437
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 503 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 561
Query: 438 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 497
+L + + P+ KV + KQ Y E ++ KSS P++ + ++ +KGLG
Sbjct: 562 SLLRHRFLEEFITPIVKVSKNKQELAFYSLPEFEEWKSSTPNHKKWKVKYYKGLGTSTSK 621
Query: 498 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKE 539
+ E + ++ + K ED A ++ FS +VD RKE
Sbjct: 622 EAKEYFADMKRHRIQFKYSGPEDDAAISLAFSK---KQVDDRKE 662
Score = 85 (35.0 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V + L + KK K+K +++ V+ + ++
Sbjct: 310 ISFVNSIATSKGGRHVDYVADQIVSKLVDVVKK----KNKGGVAVKAHQVKNHMWIFVNA 365
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 366 LIENPTFDSQTKENM 380
>RGD|62048 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10116 "Rattus
norvegicus" [GO:0000287 "magnesium ion binding" evidence=ISO;ISS]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0003677 "DNA binding"
evidence=ISO;TAS] [GO:0003682 "chromatin binding" evidence=ISO;IDA]
[GO:0003916 "DNA topoisomerase activity" evidence=IDA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IDA;TAS]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISO;IDA] [GO:0006266 "DNA ligation" evidence=ISO]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0007059
"chromosome segregation" evidence=ISO;IBA] [GO:0007420 "brain
development" evidence=IEP] [GO:0007568 "aging" evidence=IEP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO] [GO:0008144 "drug
binding" evidence=ISO] [GO:0008301 "DNA binding, bending"
evidence=ISO;ISS] [GO:0009295 "nucleoid" evidence=IBA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISO;IDA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=IEP] [GO:0021707 "cerebellar
granule cell differentiation" evidence=IEP] [GO:0030261 "chromosome
condensation" evidence=ISO] [GO:0030263 "apoptotic chromosome
condensation" evidence=ISO] [GO:0040016 "embryonic cleavage"
evidence=ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042803 "protein homodimerization activity" evidence=ISO]
[GO:0042826 "histone deacetylase binding" evidence=ISO] [GO:0043065
"positive regulation of apoptotic process" evidence=ISO] [GO:0043130
"ubiquitin binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0043566 "structure-specific DNA binding"
evidence=IDA] [GO:0045070 "positive regulation of viral genome
replication" evidence=ISO] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0071107 "response to parathyroid hormone stimulus"
evidence=IEP] [GO:0000228 "nuclear chromosome" evidence=ISO]
[GO:0005814 "centriole" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 RGD:62048 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0071107
GO:GO:0000795 GO:GO:0006265 GO:GO:0043566 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:Z46372 EMBL:Z19552 EMBL:Z29676 IPI:IPI00193944
PIR:A48536 PIR:JN0598 RefSeq:NP_071519.2 UniGene:Rn.90996
ProteinModelPortal:P41516 SMR:P41516 STRING:P41516 PRIDE:P41516
GeneID:360243 KEGG:rno:360243 BindingDB:P41516 ChEMBL:CHEMBL3400
NextBio:672745 ArrayExpress:P41516 Genevestigator:P41516
Uniprot:P41516
Length = 1526
Score = 270 (100.1 bits), Expect = 6.3e-23, Sum P(2) = 6.3e-23
Identities = 77/228 (33%), Positives = 114/228 (50%)
Query: 327 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 381
D S E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 444 DAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 501
Query: 382 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 437
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 502 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 560
Query: 438 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 497
+L + + P+ KV + KQ Y E ++ KS+ P++ + ++ +KGLG
Sbjct: 561 SLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSTNPNHKKWKVKYYKGLGTSTSK 620
Query: 498 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKELIQN 543
+ E N ++ + K ED A ++ FS +VD RKE + N
Sbjct: 621 EAKEYFANMKRHRIQFKYSGPEDDAAISLAFSK---KQVDDRKEWLTN 665
Score = 79 (32.9 bits), Expect = 6.3e-23, Sum P(2) = 6.3e-23
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V + L + KK K+K +++ + V+ + +
Sbjct: 309 ISFVNSIATSKGGRHVDYVADQIVSKLVDVVKK----KNKGGVAVKADQVKNHMWIFGNA 364
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 365 VIENPTFDSQTKENM 379
>UNIPROTKB|Q0DYE1 [details] [associations]
symbol:Os02g0699700 "DNA topoisomerase 2" species:39947
"Oryza sativa Japonica Group" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
EMBL:AP008208 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K03164
RefSeq:NP_001047833.1 UniGene:Os.34202 ProteinModelPortal:Q0DYE1
STRING:Q0DYE1 PRIDE:Q0DYE1 GeneID:4330426 KEGG:osa:4330426
Gramene:Q0DYE1 Uniprot:Q0DYE1
Length = 956
Score = 293 (108.2 bits), Expect = 1.2e-22, P = 1.2e-22
Identities = 120/501 (23%), Positives = 219/501 (43%)
Query: 70 PVDSKDRQG---TRIRFWPDKQVFTTAIQFDHNTIA---GRIRELAFLNPKLTIALRKED 123
P +K +QG TR+ F PD F +++ +A R+ ++A K T+ + +
Sbjct: 201 PQITKCKQGENWTRVTFKPDLAKFNMT-HLENDVVALMRKRVVDMAGTLGK-TVKVELDH 258
Query: 124 SDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDT 183
+ +++Y ++ Y++ + D+ ++++ + V+ ++ + +
Sbjct: 259 QKVPVHSFSDY-----VKLYIKSASKDRDDVNELPSISQKVND-RWEVCVSLSEGQFQQ- 311
Query: 184 MLGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIIS 242
+ + N I TI GGTH++ V + T +N + K++K K +V+ L ++
Sbjct: 312 -VSFVNRIATIKGGTHVDYVTNQIATHVMNIVNKRNKNAHMK-----AHNVKSHLWVFVN 365
Query: 243 VRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXX 302
+ NP F+ QTK L R+ S E ++L+
Sbjct: 366 ALIDNPAFDSQTKETL---TTRQASFGSKCELSDDFLKKVGSSAIVLNLLSWAEFKLSKE 422
Query: 303 XXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESE---IFIVEGDSAGGSAKQGRD---R 356
R R + +P KL D + ++S + + EGDSA A G R
Sbjct: 423 LQKTDGSKRS----RLTGIP-KLEDANGAGGKDSNNCTLILTEGDSAKALAMAGISVVGR 477
Query: 357 RFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK-EALRYHKIIILT 415
+ + PLRGK+LNV + +N EIQN+ + LGL G+ + + LRY ++I+T
Sbjct: 478 DYYGVFPLRGKLLNVREASHKQIMENAEIQNIKQILGLQ-HGKQYDSTKGLRYGHLMIMT 536
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVG-VPPLYKV--ERGKQVQY-CYDDAELK 471
D D DG+HI+ LL+ F + + +L V + P+ K +R K++ Y E +
Sbjct: 537 DQDHDGSHIKGLLINFIHSFWPSLIKIPSFLVEFITPIIKATNKRDKKIVLPFYSMPEYE 596
Query: 472 KVKSSFPSNAL-YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 530
+ K S NA +SI+ +KGLG + + K V ++ + N + +
Sbjct: 597 QWKESLGGNASGWSIKYYKGLGTSTSSE-GRQYFQDIAKHKKDFVWKNDQDDNDIELAFS 655
Query: 531 GARVDTRKELIQNAANLVNLD 551
R+ RKE + N + +LD
Sbjct: 656 KKRITDRKEWLTNFQSGTHLD 676
>UNIPROTKB|O46374 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9823 "Sus
scrofa" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0000287 "magnesium ion binding" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=IEA] [GO:0043130 "ubiquitin
binding" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0030263 "apoptotic chromosome condensation"
evidence=IEA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006266 "DNA ligation" evidence=IEA] [GO:0005814 "centriole"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0000287 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0008301 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
OrthoDB:EOG4KWJS0 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:AB009387 RefSeq:NP_999049.1 UniGene:Ssc.14506
ProteinModelPortal:O46374 SMR:O46374 STRING:O46374 PRIDE:O46374
Ensembl:ENSSSCT00000019023 GeneID:396917 KEGG:ssc:396917
CTD:100038293 Uniprot:O46374
Length = 1533
Score = 262 (97.3 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 74/224 (33%), Positives = 111/224 (49%)
Query: 327 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 381
D E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 503
Query: 382 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 437
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 504 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 562
Query: 438 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 497
+L + + P+ KV + KQ Y E ++ KSS P++ + ++ +KGLG
Sbjct: 563 SLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYKGLGTSTSK 622
Query: 498 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKE 539
+ E + ++ + K ED A ++ FS ++D RKE
Sbjct: 623 EAKEYFADMKRHRIQFKYSGPEDDAAISLAFSK---KQIDDRKE 663
Score = 85 (35.0 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V + L + KK K+K +++ V+ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYVADQIVAKLVDVVKK----KNKGGVAVKAHQVKNHMWIFVNA 366
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 367 LIENPTFDSQTKENM 381
>UNIPROTKB|F1MDU7 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045870
"positive regulation of retroviral genome replication"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0042826 "histone deacetylase binding"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040016 "embryonic cleavage" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
[GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0007059 "chromosome
segregation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006266 "DNA ligation" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005814
"centriole" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase
C binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:DAAA02049137 IPI:IPI00923890
Ensembl:ENSBTAT00000061367 ArrayExpress:F1MDU7 Uniprot:F1MDU7
Length = 1533
Score = 259 (96.2 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 74/224 (33%), Positives = 110/224 (49%)
Query: 327 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 381
D E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 503
Query: 382 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 437
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 504 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 562
Query: 438 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 497
+L + + P+ KV + KQ Y E ++ KSS P++ + ++ +KGLG
Sbjct: 563 SLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYKGLGTSTSK 622
Query: 498 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKE 539
+ E + ++ + K ED A ++ FS + D RKE
Sbjct: 623 EAKEYFADMKRHRIQFKYSGPEDDAAISLAFSK---KQTDDRKE 663
Score = 86 (35.3 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 185 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V + T+ ++ + KK+K +++ V+ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNKG----GVAVKAHQVKNHMWIFVNA 366
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 367 LIENPTFDSQTKENM 381
>UNIPROTKB|F1NR58 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 IPI:IPI00819818
EMBL:AADN02001127 Ensembl:ENSGALT00000037716 ArrayExpress:F1NR58
Uniprot:F1NR58
Length = 1627
Score = 262 (97.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 80/245 (32%), Positives = 122/245 (49%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 454 SSVKHSKIKGIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 511
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 420
LRGKILNV + +N EI N+I+ +GL K ED + ++LRY KI+I+TD D D
Sbjct: 512 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQD 571
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 480
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K ++
Sbjct: 572 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMENH 631
Query: 481 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 538
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 632 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 688
Query: 539 ELIQN 543
E + N
Sbjct: 689 EWLTN 693
Score = 83 (34.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 29/108 (26%), Positives = 48/108 (44%)
Query: 152 KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 211
K +H+VV R DV L + + + NSI T GG H++ V + L
Sbjct: 313 KVIHEVVNERWDV-------CLTLSEKGFQQ--ISFVNSIATTKGGRHVDYVVDQVVGKL 363
Query: 212 NSLGKKSKTVKDK-DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRL 258
+ KK K+K +S+ V+ + ++ + NP F+ QTK +
Sbjct: 364 IEVVKK----KNKAGVSVKPFQVKNHIWVFVNCLIENPSFDSQTKENM 407
>UNIPROTKB|O42131 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003682 "chromatin binding" evidence=IBA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS;IBA] [GO:0005080 "protein kinase C binding"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISS;IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0042826 "histone deacetylase binding"
evidence=IBA] [GO:0071778 "WINAC complex" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005080 GO:GO:0005654 GO:GO:0003682
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 EMBL:AB007446
IPI:IPI00819818 RefSeq:NP_990413.1 UniGene:Gga.30963
ProteinModelPortal:O42131 SMR:O42131 STRING:O42131 PRIDE:O42131
GeneID:395966 KEGG:gga:395966 CTD:7155 NextBio:20816031
Uniprot:O42131
Length = 1627
Score = 262 (97.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 80/245 (32%), Positives = 122/245 (49%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 454 SSVKHSKIKGIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 511
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 420
LRGKILNV + +N EI N+I+ +GL K ED + ++LRY KI+I+TD D D
Sbjct: 512 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQD 571
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 480
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K ++
Sbjct: 572 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMENH 631
Query: 481 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 538
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 632 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 688
Query: 539 ELIQN 543
E + N
Sbjct: 689 EWLTN 693
Score = 83 (34.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 29/108 (26%), Positives = 48/108 (44%)
Query: 152 KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 211
K +H+VV R DV L + + + NSI T GG H++ V + L
Sbjct: 313 KVIHEVVNERWDV-------CLTLSEKGFQQ--ISFVNSIATTKGGRHVDYVVDQVVGKL 363
Query: 212 NSLGKKSKTVKDK-DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRL 258
+ KK K+K +S+ V+ + ++ + NP F+ QTK +
Sbjct: 364 IEVVKK----KNKAGVSVKPFQVKNHIWVFVNCLIENPSFDSQTKENM 407
>UNIPROTKB|E1BZ19 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005080 "protein kinase C binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005829 GO:GO:0005524 GO:GO:0005654 GO:GO:0003682
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AADN02001127 IPI:IPI00599764
ProteinModelPortal:E1BZ19 Ensembl:ENSGALT00000018432
ArrayExpress:E1BZ19 Uniprot:E1BZ19
Length = 1629
Score = 262 (97.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 80/245 (32%), Positives = 122/245 (49%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 456 SSVKHSKIKGIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 513
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 420
LRGKILNV + +N EI N+I+ +GL K ED + ++LRY KI+I+TD D D
Sbjct: 514 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQD 573
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 480
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K ++
Sbjct: 574 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMENH 633
Query: 481 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 538
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 634 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 690
Query: 539 ELIQN 543
E + N
Sbjct: 691 EWLTN 695
Score = 83 (34.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 31/110 (28%), Positives = 48/110 (43%)
Query: 152 KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT-RT 210
K +H+VV R DV L + + + NSI T GG H++ V + +
Sbjct: 313 KVIHEVVNERWDV-------CLTLSEKGFQQ--ISFVNSIATTKGGRHVDYVVDQVVGKL 363
Query: 211 LNSLGKKSKT-VKDKDISLSG-EHVREGLTCIISVRVPNPEFEGQTKTRL 258
+ + KK+K V K S H+ + C+I NP F+ QTK +
Sbjct: 364 IEVVKKKNKAGVSVKPFQASNFNHIWVFVNCLIE----NPSFDSQTKENM 409
>WB|WBGene00019884 [details] [associations]
symbol:R05D3.12 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000003 "reproduction" evidence=IMP] [GO:0007276 "gamete
generation" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081667 GO:GO:0007276
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222
RefSeq:NP_001129839.2 RefSeq:NP_001254958.1 RefSeq:NP_741252.2
ProteinModelPortal:P34534 SMR:P34534 PaxDb:P34534
EnsemblMetazoa:R05D3.12a GeneID:259522 KEGG:cel:CELE_R05D3.12
UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a WormBase:R05D3.12b
WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW NextBio:891486
Uniprot:P34534
Length = 1170
Score = 252 (93.8 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 72/228 (31%), Positives = 115/228 (50%)
Query: 332 TPEESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 388
T E+ + + EGDSA A G + R + PL+GK+LNV D+A KNEEI NL
Sbjct: 471 TAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASKNEEISNL 530
Query: 389 IRALGLGVKGED-FKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIY 446
+R LGL + + +E+LRY +++IL D D DG+HI+ L++ F +++ +L +G I
Sbjct: 531 LRILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVNFIHKFWPSLVHTDGFIQ 590
Query: 447 VGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWE--TTL 504
PL K ++G +V+ + E +K + + I+ +KGLG + E + L
Sbjct: 591 SFRTPLLKAKKGDKVRSFFSMNEYRKW-ADVEEGGKWKIKYYKGLGTSTSNEAREYFSDL 649
Query: 505 NPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAAN-LVNLD 551
+ K D + F + D RKE I+ + N + N D
Sbjct: 650 DHHTVNFKYTGTTDDDAIRMAFDR---DKSDERKEWIRRSENEITNED 694
Score = 89 (36.4 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 45/191 (23%), Positives = 78/191 (40%)
Query: 71 VDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFLNPK-LTIALRKEDSDPE 127
+D + T++ F PD + F D + I R+ E+A P+ + + L + D +
Sbjct: 225 LDETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRVFEVAATLPRDVDVYLNGQKCDVD 284
Query: 128 KNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGY 187
G E+YV+ N L R V G+ S ++ +
Sbjct: 285 -----------GFEDYVKMFNDSSSLLFLHPTPRWHV-GVAKRNNFFGESHVVLPKIVSF 332
Query: 188 ANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPN 247
N+I T GG+H++ V + + + SK + D S+ ++ L+ I+ + N
Sbjct: 333 VNNINTEKGGSHVDYVMDKIVNIIKPI-VDSK-LGDPTKSVKPAVIKNNLSIFINCLIEN 390
Query: 248 PEFEGQTKTRL 258
P FE QTK L
Sbjct: 391 PSFESQTKETL 401
>UNIPROTKB|P34534 [details] [associations]
symbol:R05D3.12 "Putative DNA topoisomerase 2,
mitochondrial" species:6239 "Caenorhabditis elegans" [GO:0009295
"nucleoid" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:FO081667 GO:GO:0007276 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 RefSeq:NP_001129839.2
RefSeq:NP_001254958.1 RefSeq:NP_741252.2 ProteinModelPortal:P34534
SMR:P34534 PaxDb:P34534 EnsemblMetazoa:R05D3.12a GeneID:259522
KEGG:cel:CELE_R05D3.12 UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a
WormBase:R05D3.12b WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW
NextBio:891486 Uniprot:P34534
Length = 1170
Score = 252 (93.8 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 72/228 (31%), Positives = 115/228 (50%)
Query: 332 TPEESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 388
T E+ + + EGDSA A G + R + PL+GK+LNV D+A KNEEI NL
Sbjct: 471 TAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASKNEEISNL 530
Query: 389 IRALGLGVKGED-FKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIY 446
+R LGL + + +E+LRY +++IL D D DG+HI+ L++ F +++ +L +G I
Sbjct: 531 LRILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVNFIHKFWPSLVHTDGFIQ 590
Query: 447 VGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWE--TTL 504
PL K ++G +V+ + E +K + + I+ +KGLG + E + L
Sbjct: 591 SFRTPLLKAKKGDKVRSFFSMNEYRKW-ADVEEGGKWKIKYYKGLGTSTSNEAREYFSDL 649
Query: 505 NPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAAN-LVNLD 551
+ K D + F + D RKE I+ + N + N D
Sbjct: 650 DHHTVNFKYTGTTDDDAIRMAFDR---DKSDERKEWIRRSENEITNED 694
Score = 89 (36.4 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 45/191 (23%), Positives = 78/191 (40%)
Query: 71 VDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFLNPK-LTIALRKEDSDPE 127
+D + T++ F PD + F D + I R+ E+A P+ + + L + D +
Sbjct: 225 LDETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRVFEVAATLPRDVDVYLNGQKCDVD 284
Query: 128 KNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGY 187
G E+YV+ N L R V G+ S ++ +
Sbjct: 285 -----------GFEDYVKMFNDSSSLLFLHPTPRWHV-GVAKRNNFFGESHVVLPKIVSF 332
Query: 188 ANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPN 247
N+I T GG+H++ V + + + SK + D S+ ++ L+ I+ + N
Sbjct: 333 VNNINTEKGGSHVDYVMDKIVNIIKPI-VDSK-LGDPTKSVKPAVIKNNLSIFINCLIEN 390
Query: 248 PEFEGQTKTRL 258
P FE QTK L
Sbjct: 391 PSFESQTKETL 401
>UNIPROTKB|Q7RJ69 [details] [associations]
symbol:PY03394 "DNA topoisomerase 2" species:73239
"Plasmodium yoelii yoelii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:AABL01000973
RefSeq:XP_731396.1 HSSP:P06786 ProteinModelPortal:Q7RJ69
STRING:Q7RJ69 GeneID:3830618 KEGG:pyo:PY03394
EuPathDB:PlasmoDB:PY03394 Uniprot:Q7RJ69
Length = 1489
Score = 231 (86.4 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 66/234 (28%), Positives = 120/234 (51%)
Query: 327 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 381
D S +E + + EGDSA G + GRDR + PL+GK+LNV +
Sbjct: 490 DAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDR--YGVFPLKGKLLNVRDASFKQLMD 547
Query: 382 NEEIQNLIRALGLGVKGEDFKK-EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLF 440
N+EIQN+ + +GL + ++ + + LRY ++I+TD D DG+HI+ LL+ +++ +L
Sbjct: 548 NKEIQNIFKIMGLDITDKNKQDIKGLRYGSLMIMTDQDYDGSHIKGLLINMIHKFWPSLL 607
Query: 441 D-EGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNAL-YSIQRFKGLGEMMPVQ 498
+G + V P+ KV++G Q + AE ++ K + +N + + I+ +KGLG +
Sbjct: 608 KHKGFLCEFVTPIVKVQKGNQELSFFTIAEYEQWKEN--TNLVGWKIKYYKGLGTSTDKE 665
Query: 499 LWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDH 552
+ + + + L D + + + + R++ RK +QN +DH
Sbjct: 666 FKQYFSDIQSHKIFFLWTGDR-DGDSIDMAFSKKRIEDRKLWLQNFILGSYVDH 718
Score = 113 (44.8 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 177 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREG 236
+D + + NSI T GGTH+ + L LNSL KK+ + + H+R
Sbjct: 344 TDGSQFQQVSFVNSICTTKGGTHVSYIVDQL---LNSLSKKANAKNKGGMEIKAGHIRNH 400
Query: 237 LTCIISVRVPNPEFEGQTKTRLGNPEVR 264
L ++ + NP F+ QTK L + +
Sbjct: 401 LWVFVNCLIVNPTFDSQTKETLTTKQAK 428
>UNIPROTKB|E9PCY5 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005634 GO:GO:0001764 GO:GO:0005694 GO:GO:0030900
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 HGNC:HGNC:11990 ChiTaRS:TOP2B EMBL:AC093416
IPI:IPI00925477 ProteinModelPortal:E9PCY5 SMR:E9PCY5
Ensembl:ENST00000424225 ArrayExpress:E9PCY5 Bgee:E9PCY5
Uniprot:E9PCY5
Length = 1150
Score = 258 (95.9 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
Identities = 79/245 (32%), Positives = 120/245 (48%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 444 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 501
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 420
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 502 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 561
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 480
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K +
Sbjct: 562 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQ 621
Query: 481 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 538
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 622 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 678
Query: 539 ELIQN 543
E + N
Sbjct: 679 EWLTN 683
Score = 81 (33.6 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 327 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 382
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 383 LIENPTFDSQTKENM 397
>ZFIN|ZDB-GENE-041008-136 [details] [associations]
symbol:top2b "topoisomerase (DNA) II beta"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS] [GO:0030261
"chromosome condensation" evidence=ISS] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS;IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0071778 "WINAC complex"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0005080 "protein kinase C binding" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0003682 "chromatin binding"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0042826
"histone deacetylase binding" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0010842 "retina layer
formation" evidence=IMP] [GO:0031290 "retinal ganglion cell axon
guidance" evidence=IMP] [GO:0007412 "axon target recognition"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-041008-136
GO:GO:0005524 GO:GO:0005080 GO:GO:0003682 GO:GO:0006261
GO:GO:0010842 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0007412
GO:GO:0031290 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 EMBL:BX927238 EMBL:CR391921
IPI:IPI00495305 RefSeq:NP_001038656.1 UniGene:Dr.105756 SMR:Q1LUT2
STRING:Q1LUT2 Ensembl:ENSDART00000130695 GeneID:569877
KEGG:dre:569877 InParanoid:Q1LUT2 OMA:PITKAAP NextBio:20889886
Uniprot:Q1LUT2
Length = 1618
Score = 257 (95.5 bits), Expect = 6.4e-22, Sum P(2) = 6.4e-22
Identities = 80/245 (32%), Positives = 119/245 (48%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 448 SSVKHSKIKGIPKLDDANDAGGKHSSECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 505
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 420
LRGKILNV + +N EI N+I+ LGL K +D + ++LRY +I+I+TD D D
Sbjct: 506 LRGKILNVREATHKQIMENAEINNIIKILGLQYKKSYDDPESLKSLRYGRIMIMTDQDQD 565
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 480
G+HI+ LL+ FF+ +L + + P+ K + KQ Y E ++ K S
Sbjct: 566 GSHIKGLLINFFHHNWPSLLKHTFLEEFITPIVKASKNKQEVSFYSIPEFEEWKKHTESY 625
Query: 481 ALYSIQRFKGLGEMMPVQLWETTLNPEQR--MLKQLVIEDAAEANVVFSSLMGARVDTRK 538
+ I+ +KGLG + E + E+ M K ED A + FS + D RK
Sbjct: 626 KTWHIKYYKGLGTSTSKEAKEYFSDMERHRIMFKYNGTEDDAAITLAFSK---KKTDDRK 682
Query: 539 ELIQN 543
E + N
Sbjct: 683 EWLTN 687
Score = 84 (34.6 bits), Expect = 6.4e-22, Sum P(2) = 6.4e-22
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 243
+ + NSI T GG HI+ + + L + KK K+K +S+ V+ L ++
Sbjct: 331 ISFVNSIATTKGGRHIDYIVDQIVGKLIEVVKK----KNKAGVSVKPFQVKNHLWVFVNA 386
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 387 LIENPTFDSQTKENM 401
>TAIR|locus:2076201 [details] [associations]
symbol:TOPII "AT3G23890" species:3702 "Arabidopsis
thaliana" [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=IEA;ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS;IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS;IBA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0000226 "microtubule cytoskeleton organization"
evidence=RCA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006260 "DNA replication" evidence=RCA]
[GO:0006270 "DNA replication initiation" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009909 "regulation of flower development" evidence=RCA]
[GO:0009957 "epidermal cell fate specification" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016458
"gene silencing" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0034968 "histone lysine
methylation" evidence=RCA] [GO:0051225 "spindle assembly"
evidence=RCA] [GO:0051567 "histone H3-K9 methylation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:AP001297
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 OMA:AKEYFQD
EMBL:L21015 EMBL:U12284 EMBL:U12285 EMBL:M84654 IPI:IPI00527804
PIR:S53598 RefSeq:NP_189031.1 UniGene:At.22343
ProteinModelPortal:P30182 SMR:P30182 STRING:P30182 PaxDb:P30182
PRIDE:P30182 EnsemblPlants:AT3G23890.1 GeneID:821972
KEGG:ath:AT3G23890 GeneFarm:2656 TAIR:At3g23890 InParanoid:P30182
PhylomeDB:P30182 ProtClustDB:PLN03237 Genevestigator:P30182
GermOnline:AT3G23890 Uniprot:P30182
Length = 1473
Score = 289 (106.8 bits), Expect = 6.5e-22, P = 6.5e-22
Identities = 102/381 (26%), Positives = 168/381 (44%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVR 244
+ + NSI TI GGTH++ V + +T + + K K+K+ ++ +V+ L ++
Sbjct: 314 VSFVNSIATIKGGTHVDYVTSQITNHIVAAVNK----KNKNANVKAHNVKNHLWVFVNAL 369
Query: 245 VPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXX 304
+ NP F+ QTK L +R Q EL D
Sbjct: 370 IDNPAFDSQTKETL---TLR-------QSSFGSKCELSEDFLKKVGKSGVVENLLSWADF 419
Query: 305 XXXXXVRQKSVLRSSS-LPGKLADCSSTTPEESEI---FIVEGDSAGGSAKQGRD---RR 357
+++ ++ L KL D + + S + + EGDSA A GR
Sbjct: 420 KQNKDLKKSDGAKTGRVLVEKLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNN 479
Query: 358 FQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDA 417
+ + PLRGK+LNV + N+EI+NL + LGL + +LRY +++I+TD
Sbjct: 480 YCGVFPLRGKLLNVREASTTQITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQ 539
Query: 418 DVDGAHIRTLLLTFFYRYQKTLFDEGCIYVG-VPPLYKVER-G-KQVQYCYDDAELKKVK 474
D DG+HI+ LL+ F + + +L V + P+ K R G K+V Y E ++ K
Sbjct: 540 DHDGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWK 599
Query: 475 SSFPSNAL-YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 533
S NA + I+ +KGLG + E N K V ED + + + +
Sbjct: 600 ESLKGNATGWDIKYYKGLGTSTAEEGKEYFSNLGLHK-KDFVWEDEQDGEAIELAFSKKK 658
Query: 534 VDTRKELIQNAANLVNLDHLD 554
++ RK + ++ V +HLD
Sbjct: 659 IEARKNWL---SSYVPGNHLD 676
>MGI|MGI:98791 [details] [associations]
symbol:Top2b "topoisomerase (DNA) II beta" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0001764 "neuron migration" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=ISO;IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISO;IBA] [GO:0005080 "protein
kinase C binding" evidence=ISO;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IDA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0042826 "histone deacetylase binding" evidence=ISO;IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0071778 "WINAC
complex" evidence=ISO;IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
MGI:MGI:98791 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005080 GO:GO:0005654 GO:GO:0005730
GO:GO:0030900 GO:GO:0003682 GO:GO:0006261 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0071778 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 OMA:AKEYFQD EMBL:D38046
EMBL:BC041106 EMBL:BC054541 IPI:IPI00135443 RefSeq:NP_033435.2
UniGene:Mm.130362 ProteinModelPortal:Q64511 SMR:Q64511
IntAct:Q64511 STRING:Q64511 PhosphoSite:Q64511 PaxDb:Q64511
PRIDE:Q64511 Ensembl:ENSMUST00000017629 GeneID:21974 KEGG:mmu:21974
UCSC:uc007shc.1 InParanoid:Q64511 OrthoDB:EOG4640B2
BindingDB:Q64511 ChEMBL:CHEMBL5564 NextBio:301674 Bgee:Q64511
CleanEx:MM_TOP2B Genevestigator:Q64511
GermOnline:ENSMUSG00000017485 Uniprot:Q64511
Length = 1612
Score = 258 (95.9 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
Identities = 79/245 (32%), Positives = 120/245 (48%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 437 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 494
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 420
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 495 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 554
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 480
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K +
Sbjct: 555 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQ 614
Query: 481 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 538
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 615 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 671
Query: 539 ELIQN 543
E + N
Sbjct: 672 EWLTN 676
Score = 82 (33.9 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 320 ISFVNSIATTKGGRHVDYVVDQVVSKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 375
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 376 LIENPTFDSQTKENM 390
>UNIPROTKB|F1MU48 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:DAAA02061099 EMBL:DAAA02061100 EMBL:DAAA02061101
EMBL:DAAA02061102 IPI:IPI01003475 Ensembl:ENSBTAT00000006030
Uniprot:F1MU48
Length = 1599
Score = 258 (95.9 bits), Expect = 9.9e-22, Sum P(2) = 9.9e-22
Identities = 79/245 (32%), Positives = 120/245 (48%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 428 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 485
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 420
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 486 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 545
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 480
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K +
Sbjct: 546 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQ 605
Query: 481 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 538
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 606 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 662
Query: 539 ELIQN 543
E + N
Sbjct: 663 EWLTN 667
Score = 81 (33.6 bits), Expect = 9.9e-22, Sum P(2) = 9.9e-22
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 311 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 366
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 367 LIENPTFDSQTKENM 381
>UNIPROTKB|F1PRA7 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0042826 "histone deacetylase binding" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524 GO:GO:0001764
GO:GO:0005654 GO:GO:0030900 GO:GO:0003682 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AAEX03013556 Ensembl:ENSCAFT00000009221
Uniprot:F1PRA7
Length = 1602
Score = 258 (95.9 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 79/245 (32%), Positives = 120/245 (48%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 426 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 483
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 420
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 484 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 543
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 480
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K +
Sbjct: 544 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQ 603
Query: 481 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 538
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 604 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 660
Query: 539 ELIQN 543
E + N
Sbjct: 661 EWLTN 665
Score = 81 (33.6 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 309 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 364
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 365 LIENPTFDSQTKENM 379
>UNIPROTKB|Q64399 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:10030
"Cricetulus longicaudatus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GO:GO:0005730 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 PROSITE:PS50880 HOVERGEN:HBG052998 EMBL:X86455
ProteinModelPortal:Q64399 SMR:Q64399 PRIDE:Q64399 Uniprot:Q64399
Length = 1612
Score = 258 (95.9 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 79/245 (32%), Positives = 120/245 (48%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 437 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 494
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 420
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 495 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 554
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 480
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K +
Sbjct: 555 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQ 614
Query: 481 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 538
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 615 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 671
Query: 539 ELIQN 543
E + N
Sbjct: 672 EWLTN 676
Score = 81 (33.6 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 320 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 375
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 376 LIENPTFDSQTKENM 390
>UNIPROTKB|F1RS45 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:CU582923 Ensembl:ENSSSCT00000012279
ArrayExpress:F1RS45 Uniprot:F1RS45
Length = 1615
Score = 258 (95.9 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 79/245 (32%), Positives = 120/245 (48%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 441 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 498
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 420
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 499 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 558
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 480
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K +
Sbjct: 559 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELAFYSIPEFDEWKKHIENQ 618
Query: 481 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 538
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 619 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 675
Query: 539 ELIQN 543
E + N
Sbjct: 676 EWLTN 680
Score = 81 (33.6 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 324 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 379
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 380 LIENPTFDSQTKENM 394
>UNIPROTKB|Q02880 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA;IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IDA;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0005080
"protein kinase C binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0042826
"histone deacetylase binding" evidence=IPI] [GO:0000792
"heterochromatin" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0008022
"protein C-terminus binding" evidence=IPI] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0071778 "WINAC complex" evidence=IDA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0006261 GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 CTD:7155 EMBL:X68060
EMBL:X71911 EMBL:Z15111 EMBL:Z15115 EMBL:M27504 EMBL:AJ011721
EMBL:AJ011722 EMBL:AJ011723 EMBL:AJ011724 EMBL:AJ011725
EMBL:AJ011726 EMBL:AJ011727 EMBL:AJ011728 EMBL:AJ011729
EMBL:AJ011730 EMBL:AJ011731 EMBL:AJ011732 EMBL:X53662 EMBL:U54831
IPI:IPI00027280 IPI:IPI00217709 PIR:S26730 RefSeq:NP_001059.2
UniGene:Hs.475733 PDB:3QX3 PDBsum:3QX3 ProteinModelPortal:Q02880
SMR:Q02880 IntAct:Q02880 STRING:Q02880 PhosphoSite:Q02880
DMDM:20141946 PaxDb:Q02880 PRIDE:Q02880 Ensembl:ENST00000264331
Ensembl:ENST00000435706 GeneID:7155 KEGG:hsa:7155 UCSC:uc003cdj.2
UCSC:uc011awn.1 GeneCards:GC03M025639 H-InvDB:HIX0030807
HGNC:HGNC:11990 HPA:CAB004601 HPA:HPA024120 MIM:126431
neXtProt:NX_Q02880 PharmGKB:PA36672 InParanoid:Q02880 OMA:AKEYFQD
PhylomeDB:Q02880 BindingDB:Q02880 ChEMBL:CHEMBL3396 ChiTaRS:TOP2B
GenomeRNAi:7155 NextBio:27998 ArrayExpress:Q02880 Bgee:Q02880
CleanEx:HS_TOP2B Genevestigator:Q02880 GermOnline:ENSG00000077097
Uniprot:Q02880
Length = 1626
Score = 258 (95.9 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 79/245 (32%), Positives = 120/245 (48%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 449 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 506
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 420
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 507 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 566
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 480
G+HI+ LL+ F + +L G + + P+ K + KQ Y E + K +
Sbjct: 567 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQ 626
Query: 481 ALYSIQRFKGLGEMMPVQLWETTLNPEQ-RMLKQLV-IEDAAEANVVFSSLMGARVDTRK 538
+ I+ +KGLG + E + E+ R+L + ED A + FS ++D RK
Sbjct: 627 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSK---KKIDDRK 683
Query: 539 ELIQN 543
E + N
Sbjct: 684 EWLTN 688
Score = 81 (33.6 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 332 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 387
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 388 LIENPTFDSQTKENM 402
>POMBASE|SPBC1A4.03c [details] [associations]
symbol:top2 "DNA topoisomerase II" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=NAS] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI;IDA;IMP] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=IGI;IDA;IMP]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO] [GO:0006325 "chromatin organization" evidence=IGI]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0007076
"mitotic chromosome condensation" evidence=IMP] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 PomBase:SPBC1A4.03c Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0007076 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006325 GO:GO:0000228
GO:GO:0006271 GO:GO:0000712 GO:GO:0042790 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD EMBL:X04326 PIR:T39851
RefSeq:NP_595805.1 ProteinModelPortal:P08096 SMR:P08096
STRING:P08096 EnsemblFungi:SPBC1A4.03c.1 GeneID:2540541
KEGG:spo:SPBC1A4.03c OrthoDB:EOG4XPTPZ NextBio:20801667
Uniprot:P08096
Length = 1485
Score = 280 (103.6 bits), Expect = 6.6e-21, P = 6.6e-21
Identities = 105/430 (24%), Positives = 184/430 (42%)
Query: 132 NEYFFAGGLEEYVQ-WLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANS 190
NE G ++YV+ +L +D KP + + D+A SD + + N+
Sbjct: 305 NERISISGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFA-VSDGQFK-QVSFVNN 362
Query: 191 IRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEF 250
I TI GGTH+ V + ++ + KK ++K + ++ + ++ ++ NP F
Sbjct: 363 ISTIRGGTHVNYVANKIVDAIDEVVKK----ENKKAPVKAFQIKNYVQVFVNCQIENPSF 418
Query: 251 EGQTKTRLGNPEVRKVVDQSVQEYLTE-YLELHPDVXXXXXXXXXXXXXXXXXXXXXXXX 309
+ QTK L KV Q L++ +L+
Sbjct: 419 DSQTKETL----TTKVSAFGSQCTLSDKFLKAIKKSSVVEEVLKFATAKADQQLSKGDGG 474
Query: 310 VRQKSVLRSSSLPGKLADCSSTTPEESE---IFIVEGDSAGGSAKQGRD---RRFQAILP 363
+R R + L KL D + +ES + + EGDSA A G R + + P
Sbjct: 475 LRS----RITGLT-KLEDANKAGTKESHKCVLILTEGDSAKSLAVSGLSVVGRDYYGVFP 529
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAH 423
LRGK+LNV + + N+EIQ + + +G K + LRY ++I+TD D DG+H
Sbjct: 530 LRGKLLNVREASHSQILNNKEIQAIKKIMGFTHKKTYTDVKGLRYGHLMIMTDQDHDGSH 589
Query: 424 IRTLLLTFFYR-YQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNAL 482
I+ L++ + Y L G + + P+ K RG QVQ Y E + K + +
Sbjct: 590 IKGLIINYLESSYPSLLQIPGFLIQFITPIIKCTRGNQVQAFYTLPEYEYWKEANNNGRG 649
Query: 483 YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 542
+ I+ +KGLG + ++ + R +K +A ++ + + D RKE ++
Sbjct: 650 WKIKYYKGLGTSDHDDM-KSYFSDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEWLR 708
Query: 543 NAANLVNLDH 552
+ +D+
Sbjct: 709 TYRPGIYMDY 718
>UNIPROTKB|O42130 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819
"sister chromatid segregation" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS;IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISS;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=ISS;IBA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS] [GO:0006974 "response to DNA damage
stimulus" evidence=ISS] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISS] [GO:0006266 "DNA ligation"
evidence=ISS] [GO:0030263 "apoptotic chromosome condensation"
evidence=ISS] [GO:0008144 "drug binding" evidence=ISS] [GO:0003677
"DNA binding" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005654 GO:GO:0000287 GO:GO:0008144
GO:GO:0006974 GO:GO:0006261 GO:GO:0008301 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:AB007445 IPI:IPI00822514 RefSeq:NP_990122.1 UniGene:Gga.2010
ProteinModelPortal:O42130 SMR:O42130 STRING:O42130 GeneID:395570
KEGG:gga:395570 CTD:7153 HOGENOM:HOG000216693 HOVERGEN:HBG052998
NextBio:20815644 Uniprot:O42130
Length = 1553
Score = 245 (91.3 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 72/227 (31%), Positives = 112/227 (49%)
Query: 327 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 381
D S + + + EGDSA G GRD+ + PLRGK+LNV + +
Sbjct: 447 DAGSKNSIDCTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKMLNVREASHKQIME 504
Query: 382 NEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKT 438
N EI N+I+ +GL K ED + ++LRY KI+I+TD D DG+HI+ LL+ F + +
Sbjct: 505 NAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 564
Query: 439 LFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQ 498
L + + P+ KV + K+ Y E ++ KSS + + I+ +KGLG +
Sbjct: 565 LLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEEWKSSTQNYNSWKIKYYKGLGTSTSKE 624
Query: 499 LWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKELIQN 543
E + + + K ED A + FS +V+ RKE + N
Sbjct: 625 AKEYFADMARHRIGFKYSGPEDDAAITLAFSK---KKVEERKEWLTN 668
Score = 81 (33.6 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 185 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V + T+ ++ + KK+K + + V+ + ++
Sbjct: 312 VSFVNSIATTKGGRHVDYVADQIVTKLIDVVKKKNKN----GVGVKPFQVKNHMWIFVNS 367
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 368 LIENPTFDSQTKENM 382
>UNIPROTKB|F1M7A0 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0008144 GO:GO:0045944
GO:GO:0003682 GO:GO:0040016 GO:GO:0006974 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0000793
GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
IPI:IPI00562522 Ensembl:ENSRNOT00000050725 ArrayExpress:F1M7A0
Uniprot:F1M7A0
Length = 1528
Score = 270 (100.1 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 77/228 (33%), Positives = 114/228 (50%)
Query: 327 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 381
D S E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 445 DAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 502
Query: 382 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 437
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 503 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 561
Query: 438 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 497
+L + + P+ KV + KQ Y E ++ KS+ P++ + ++ +KGLG
Sbjct: 562 SLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSANPNHKKWKVKYYKGLGTSTSK 621
Query: 498 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKELIQN 543
+ E N ++ + K ED A ++ FS +VD RKE + N
Sbjct: 622 EAKEYFANMKRHRIQFKYSGPEDDAAISLAFSK---KQVDDRKEWLTN 666
Score = 53 (23.7 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 185 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKT-VKDKDISLSGEHVR 234
+ + NSI T GG H++ V + ++ ++ + KK+K V K L G H++
Sbjct: 310 ISFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKNKGGVAVKAHQLPG-HIQ 360
>UNIPROTKB|F1NZF0 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00822514 GeneTree:ENSGT00390000016222
EMBL:AADN02068749 Ensembl:ENSGALT00000040062 Uniprot:F1NZF0
Length = 1553
Score = 244 (91.0 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 76/245 (31%), Positives = 121/245 (49%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++ + + G KL D + + S + + EGDSA G GRD+ + P
Sbjct: 429 SAVKHTKIKGVPKLDDANDAGNKNSIDCTLILTEGDSAKTLAVSGLGVVGRDK--YGVFP 486
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 420
LRGK+LNV + +N EI N+I+ +GL K ED + ++LRY KI+I+TD D D
Sbjct: 487 LRGKMLNVREASHKQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQD 546
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 480
G+HI+ LL+ F + +L + + P+ KV + K+ Y E ++ KSS +
Sbjct: 547 GSHIKGLLINFIHHNWPSLLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEEWKSSTQNY 606
Query: 481 ALYSIQRFKGLGEMMPVQLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRK 538
+ I+ +KGLG + E + + + K ED A + FS +V+ RK
Sbjct: 607 NSWKIKYYKGLGTSTSKEAKEYFADMARHRIGFKYSGPEDDAAITLAFSK---KKVEERK 663
Query: 539 ELIQN 543
E + N
Sbjct: 664 EWLTN 668
Score = 81 (33.6 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 185 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V + T+ ++ + KK+K + + V+ + ++
Sbjct: 312 VSFVNSIATTKGGRHVDYVADQIVTKLIDVVKKKNKN----GVGVKPFQVKNHMWIFVNS 367
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 368 LIENPTFDSQTKENM 382
>UNIPROTKB|E9PTY5 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00193944 Ensembl:ENSRNOT00000044306
ArrayExpress:E9PTY5 Uniprot:E9PTY5
Length = 1526
Score = 270 (100.1 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 77/228 (33%), Positives = 114/228 (50%)
Query: 327 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 381
D S E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 445 DAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 502
Query: 382 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 437
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 503 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 561
Query: 438 TLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPV 497
+L + + P+ KV + KQ Y E ++ KS+ P++ + ++ +KGLG
Sbjct: 562 SLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSANPNHKKWKVKYYKGLGTSTSK 621
Query: 498 QLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRKELIQN 543
+ E N ++ + K ED A ++ FS +VD RKE + N
Sbjct: 622 EAKEYFANMKRHRIQFKYSGPEDDAAISLAFSK---KQVDDRKEWLTN 666
Score = 52 (23.4 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 185 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSK 219
+ + NSI T GG H++ V + ++ ++ + KK+K
Sbjct: 310 ISFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKNK 345
>UNIPROTKB|Q755V8 [details] [associations]
symbol:AER410W "DNA topoisomerase 2" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AE016818 GenomeReviews:AE016818_GR GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
RefSeq:NP_985265.1 ProteinModelPortal:Q755V8 SMR:Q755V8
STRING:Q755V8 EnsemblFungi:AAS53089 GeneID:4621483
KEGG:ago:AGOS_AER410W PhylomeDB:Q755V8 Uniprot:Q755V8
Length = 1427
Score = 270 (100.1 bits), Expect = 8.0e-20, P = 8.0e-20
Identities = 144/550 (26%), Positives = 230/550 (41%)
Query: 40 LEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDS--KDRQGTRIRFWPDKQVFTTAIQFD 97
LE + + G +Y QK+ V CH + S K T+I F PD Q F + D
Sbjct: 161 LETSDPKSGQKYVQKWESNMNV----CHPPKITSYKKGPSYTKITFKPDLQRFGMEVLDD 216
Query: 98 HNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV 157
I G +R + + ++R + F +E Y++ L +KK L D
Sbjct: 217 D--ILGVMRRRVY---DINGSVRDVNVSLNGKSLKIRNFKSYMELYMRSL--EKKRLIDS 269
Query: 158 VGFRKD-----VDGITI---DLALQW-CSDAYSDT---MLGYANSIRTIDGGTHIEGVKA 205
G + V+ TI + +W A SD + + NSI T GGTH+ +
Sbjct: 270 -GMAPESASEKVNAPTILYEKVNDRWELGFAVSDISFQQISFVNSIATTSGGTHVNYLTD 328
Query: 206 SLTRTLNSL-GKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 264
+ + ++ L KK KTVK I R + I+ + NP F QTK +L
Sbjct: 329 QIVKKVSELLSKKKKTVKPFQI-------RNNIFIFINCLIENPAFTSQTKEQLTT---- 377
Query: 265 KVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPG- 323
V+++ ++ E+ D ++Q R + +
Sbjct: 378 -----RVRDFGSK-CEVSSDFINKIMKTELATKIFEIADENAAKLLKQTDGTRKNRITDY 431
Query: 324 -KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERK 374
KL D + +E + + EGDSA G + GRD + PL+GKILNV
Sbjct: 432 PKLEDANKAGTKEGHKCTLVLTEGDSALSLAVAGLSVVGRD--YYGCFPLKGKILNVRDA 489
Query: 375 DEAAMYKNEEIQNLIRALGLGVKG----EDFKKEALRYHKIIILTDADVDGAHIRTLLLT 430
+ KN EIQ + + +GL K ED K LRY ++I+TD D DG+HI+ LL+
Sbjct: 490 SVEQIRKNTEIQAIKKIMGLQHKKQYTIEDMK--TLRYGHVMIMTDQDHDGSHIKGLLIN 547
Query: 431 FFYRYQKTLFD-EGCIYVGVPPLYKV---ERGKQVQYCYDDAELKKVKSSFPSNALYSIQ 486
FF L D G + + P+ KV + KQV Y+ + +K + + ++ +
Sbjct: 548 FFESTFPGLLDIPGFLIEFITPIMKVTILKPKKQVIPFYNLPDYEKWRDTESHKYVWKTK 607
Query: 487 RFKGLG--EMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNA 544
+KGLG + + + L+ + L +D++ ++ FS + D RKE ++
Sbjct: 608 YYKGLGTSSFQEAREYFSALDVHIKKFHSLNPDDSSLIDLAFSK---KKADDRKEWLRQY 664
Query: 545 ANLVNLD-HL 553
LD HL
Sbjct: 665 EPGTVLDPHL 674
>WB|WBGene00010785 [details] [associations]
symbol:top-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0009792 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 229 (85.7 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 67/241 (27%), Positives = 117/241 (48%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++S L G KL D + + S+ + + EGDSA G + GRD+ + P
Sbjct: 463 SKTKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YGVFP 520
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG-----EDFKKEALRYHKIIILTDAD 418
LRGK+LNV + + N E+ +I+ LGL K +DFK LRY K++++ D D
Sbjct: 521 LRGKLLNVREGNMKQIADNAEVNAMIKILGLQYKKKYETEDDFK--TLRYGKLMVMADQD 578
Query: 419 VDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFP 478
DG+HI+ L++ F + + +L + + P+ K +GK+ Y E + + +
Sbjct: 579 QDGSHIKGLVINFIHHFWPSLIQRNFVEEFITPIVKATKGKEEVSFYSLPEYSEWRMNTD 638
Query: 479 SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRK 538
+ Y I+ +KGLG + E L+ + ++ A + N V + +++ RK
Sbjct: 639 NWKSYKIKYYKGLGTSTSKEAKEYFLDMVRHRIR-FKYNGADDDNAVDMAFSKKKIEERK 697
Query: 539 E 539
+
Sbjct: 698 D 698
Score = 92 (37.4 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 43/189 (22%), Positives = 84/189 (44%)
Query: 71 VDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFLNPKLTIALRKEDSDPEK 128
V S D T+I F PD F D + +A R ++A + + + L + P K
Sbjct: 242 VKSTDEDFTKITFSPDLAKFKMKELDDDICHLMARRAYDVAGSSKGVAVFLNGKRI-PIK 300
Query: 129 NQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYA 188
+ +Y ++ Y N + +PL + + + D + LAL + + +
Sbjct: 301 G-FEDY-----VQMYTSQFNNEGEPLK--IAYEQVGDRWQVALALS--EKGFQQ--VSFV 348
Query: 189 NSIRTIDGGTHIEGVKASLT-RTLNSLGKK-SKTVKDKDISLSGEHVREGLTCIISVRVP 246
NSI T GG H++ V + + ++S+ +K +KT +++ ++ + ++ +
Sbjct: 349 NSIATTKGGRHVDYVADQMVAKFIDSIKRKLTKT----SMNIKPFQIKNHMWVFVNCLIE 404
Query: 247 NPEFEGQTK 255
NP F+ QTK
Sbjct: 405 NPTFDSQTK 413
>UNIPROTKB|Q23670 [details] [associations]
symbol:K12D12.1 "Probable DNA topoisomerase 2" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0009792 GO:GO:0006261 GO:GO:0000910
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 229 (85.7 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 67/241 (27%), Positives = 117/241 (48%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++S L G KL D + + S+ + + EGDSA G + GRD+ + P
Sbjct: 463 SKTKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YGVFP 520
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG-----EDFKKEALRYHKIIILTDAD 418
LRGK+LNV + + N E+ +I+ LGL K +DFK LRY K++++ D D
Sbjct: 521 LRGKLLNVREGNMKQIADNAEVNAMIKILGLQYKKKYETEDDFK--TLRYGKLMVMADQD 578
Query: 419 VDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFP 478
DG+HI+ L++ F + + +L + + P+ K +GK+ Y E + + +
Sbjct: 579 QDGSHIKGLVINFIHHFWPSLIQRNFVEEFITPIVKATKGKEEVSFYSLPEYSEWRMNTD 638
Query: 479 SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRK 538
+ Y I+ +KGLG + E L+ + ++ A + N V + +++ RK
Sbjct: 639 NWKSYKIKYYKGLGTSTSKEAKEYFLDMVRHRIR-FKYNGADDDNAVDMAFSKKKIEERK 697
Query: 539 E 539
+
Sbjct: 698 D 698
Score = 92 (37.4 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 43/189 (22%), Positives = 84/189 (44%)
Query: 71 VDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFLNPKLTIALRKEDSDPEK 128
V S D T+I F PD F D + +A R ++A + + + L + P K
Sbjct: 242 VKSTDEDFTKITFSPDLAKFKMKELDDDICHLMARRAYDVAGSSKGVAVFLNGKRI-PIK 300
Query: 129 NQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYA 188
+ +Y ++ Y N + +PL + + + D + LAL + + +
Sbjct: 301 G-FEDY-----VQMYTSQFNNEGEPLK--IAYEQVGDRWQVALALS--EKGFQQ--VSFV 348
Query: 189 NSIRTIDGGTHIEGVKASLT-RTLNSLGKK-SKTVKDKDISLSGEHVREGLTCIISVRVP 246
NSI T GG H++ V + + ++S+ +K +KT +++ ++ + ++ +
Sbjct: 349 NSIATTKGGRHVDYVADQMVAKFIDSIKRKLTKT----SMNIKPFQIKNHMWVFVNCLIE 404
Query: 247 NPEFEGQTK 255
NP F+ QTK
Sbjct: 405 NPTFDSQTK 413
>UNIPROTKB|A8JD08 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:3055
"Chlamydomonas reinhardtii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:DS496159
RefSeq:XP_001700298.1 ProteinModelPortal:A8JD08 STRING:A8JD08
EnsemblPlants:EDO98265 GeneID:5725848 KEGG:cre:CHLREDRAFT_38019
ProtClustDB:PLN03128 BioCyc:CHLAMY:CHLREDRAFT_38019-MONOMER
Uniprot:A8JD08
Length = 1167
Score = 265 (98.3 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 94/365 (25%), Positives = 155/365 (42%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVR 244
+ + NSI T GGTH++ + + + ++ K SK K ++ V+ L ++
Sbjct: 311 VSFVNSISTQKGGTHVDYIVNQVVK--HATEKLSKKTT-KTAAIKPAMVKNHLWVFLNCY 367
Query: 245 VPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXX 304
V NP F+ QTK L +R S E L+ +
Sbjct: 368 VENPAFDSQTKETL---TLRATAFGSKCELPVPLLD--KVLKAGLSDSIIRFAEFKSQKE 422
Query: 305 XXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD---RRFQAI 361
++S L + D E + + EGDSA A G R +
Sbjct: 423 LKKGDGTKRSRLHGITKLDDANDAGGPRSRECTLILTEGDSAKALAISGLGVVGRDHYGV 482
Query: 362 LPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE-ALRYHKIIILTDADVD 420
PLRGK+LNV A + N EIQN+ + +GL G+ ++ +LRY ++I+TD D D
Sbjct: 483 FPLRGKLLNVREASAAQIAANAEIQNIKQIMGLQ-HGKVYENTTSLRYGHLMIMTDQDHD 541
Query: 421 GAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 479
G+HI+ L++ F + + +L G + + P+ K RG+ + Y E + K S +
Sbjct: 542 GSHIKGLIMNFLHSFFPSLLRIPGFLLEFITPIVKARRGRDTKVFYTMPEYEAWKESLGN 601
Query: 480 -NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRK 538
+ I+ +KGLG + E + K+ V E + + + + RVD RK
Sbjct: 602 ATTAWDIKYYKGLGTSTKEEAQEYFSRLDLHR-KEFVWEGDEDGDSIELAFSKKRVDDRK 660
Query: 539 ELIQN 543
E + N
Sbjct: 661 EWLSN 665
>SGD|S000005032 [details] [associations]
symbol:TOP2 "Topoisomerase II, relieves torsional strain in
DNA by cleaving and re" species:4932 "Saccharomyces cerevisiae"
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IMP]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA;IDA]
[GO:0006333 "chromatin assembly or disassembly" evidence=IMP]
[GO:0006265 "DNA topological change" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000795 "synaptonemal complex"
evidence=IDA] [GO:0000019 "regulation of mitotic recombination"
evidence=IMP] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006259
"DNA metabolic process" evidence=IEA] [GO:0031055 "chromatin
remodeling at centromere" evidence=IMP] [GO:0097046 "replication
fork progression beyond termination site" evidence=IMP] [GO:0097047
"DNA replication termination region" evidence=IPI]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
SGD:S000005032 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 EMBL:BK006947 GO:GO:0006333 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0009330 GO:GO:0070683
GO:GO:0006271 GO:GO:0000712 EMBL:X89016 GO:GO:0000795 EMBL:AF458969
EMBL:AF458971 EMBL:AF458972 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0031055
GO:GO:0000019 KO:K02952 GO:GO:0097046 RefSeq:NP_014311.3
GeneID:855636 KEGG:sce:YNL088W KO:K03164 RefSeq:NP_014318.3
GeneID:855643 KEGG:sce:YNL081C HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
EMBL:M13814 EMBL:Z71364 PIR:S57534 PDB:1BGW PDB:1BJT PDB:1PVG
PDB:1QZR PDB:2RGR PDB:3L4J PDB:3L4K PDB:4GFH PDBsum:1BGW
PDBsum:1BJT PDBsum:1PVG PDBsum:1QZR PDBsum:2RGR PDBsum:3L4J
PDBsum:3L4K PDBsum:4GFH DisProt:DP00076 ProteinModelPortal:P06786
SMR:P06786 DIP:DIP-2300N IntAct:P06786 MINT:MINT-495862
STRING:P06786 PaxDb:P06786 PeptideAtlas:P06786 EnsemblFungi:YNL088W
CYGD:YNL088w ChEMBL:CHEMBL5290 EvolutionaryTrace:P06786
NextBio:979854 ArrayExpress:P06786 Genevestigator:P06786
GermOnline:YNL088W GO:GO:0097047 Uniprot:P06786
Length = 1428
Score = 261 (96.9 bits), Expect = 7.9e-19, P = 7.9e-19
Identities = 133/532 (25%), Positives = 223/532 (41%)
Query: 40 LEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDS--KDRQGTRIRFWPDKQVFTTAIQFD 97
LE G +Y QK+ + CH + S K T++ F PD F + D
Sbjct: 158 LETADLNVGQKYVQKWENNMSI----CHPPKITSYKKGPSYTKVTFKPDLTRFGMK-ELD 212
Query: 98 HNTIAGRIRELAF-LNPKLT-IALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH 155
N I G +R + +N + I + + + Y +E Y++ L ++ +
Sbjct: 213 -NDILGVMRRRVYDINGSVRDINVYLNGKSLKIRNFKNY-----VELYLKSLEKKRQLDN 266
Query: 156 DVVGFRK-DVDGITID-LALQW-CSDAYSDT---MLGYANSIRTIDGGTHIEGVKASLTR 209
G K D+ I + + +W + A SD + + NSI T GGTH+ + + +
Sbjct: 267 GEDGAAKSDIPTILYERINNRWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITDQIVK 326
Query: 210 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 269
++ + KK K K ++ + I+ + NP F QTK +L +V D
Sbjct: 327 KISEILKKKKKKSVKSFQ-----IKNNMFIFINCLIENPAFTSQTKEQL----TTRVKDF 377
Query: 270 SVQ-EYLTEYLE--LHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 326
+ E EY+ + D+ +KS R ++ P KL
Sbjct: 378 GSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGT----RKS--RITNYP-KLE 430
Query: 327 DCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAA 378
D + +E + + EGDSA G A GRD + PLRGK+LNV
Sbjct: 431 DANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASADQ 488
Query: 379 MYKNEEIQNLIRALGLG--VKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQ 436
+ KN EIQ + + +GL K ED K +LRY ++I+TD D DG+HI+ L++ F
Sbjct: 489 ILKNAEIQAIKKIMGLQHRKKYEDTK--SLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 546
Query: 437 KTLFD-EGCIYVGVPPLYKVERGKQVQYC---YDDAELKKVKSSFPSNALYSIQRFKGLG 492
L D +G + + P+ KV K + Y+ + +K + + + +KGLG
Sbjct: 547 PGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYKGLG 606
Query: 493 EMMPVQLWE--TTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 542
+ ++ E + L+ ++ L D ++ FS + D RKE ++
Sbjct: 607 TSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSK---KKADDRKEWLR 655
>CGD|CAL0005199 [details] [associations]
symbol:TOP2 species:5476 "Candida albicans" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IGI;ISS]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0097047 "DNA
replication termination region" evidence=IEA] [GO:0000795
"synaptonemal complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0044774 "mitotic DNA
integrity checkpoint" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IEA] [GO:0097046
"replication fork progression beyond termination site"
evidence=IEA] [GO:0031055 "chromatin remodeling at centromere"
evidence=IEA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0000019 "regulation of mitotic
recombination" evidence=IEA] [GO:0042790 "transcription of nuclear
large rRNA transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 255 (94.8 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 105/397 (26%), Positives = 168/397 (42%)
Query: 177 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL-NSLGKKSKTVKDKDISLSGEHVRE 235
SD S + + NSI T GGTH++ V + L +L KK K K + + + VR+
Sbjct: 344 SDG-SFNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKG--KKKLMIKPQEVRD 400
Query: 236 GLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXX 295
+ I+ + NP F QTK +L KV ++ + ++
Sbjct: 401 NMFLFINCLIENPAFTSQTKEQL----TTKVSQFGGKDKFVA----NDNLINRILKTSIV 452
Query: 296 XXXXXXXXXXXXXXVRQKSVLRSSSLPGK--LADCSSTTPEESE---IFIVEGDSAGGSA 350
+++ R S + G+ L D + ++ + + EG SA A
Sbjct: 453 DKIRAIANANEDKALQKADGSRKSRIKGQVNLVDANKAGTKDGHNCTLILTEGLSAMNLA 512
Query: 351 KQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK----GEDFKK 403
G R + PLRGK+LNV + KN EI +L + +GL K E+ K
Sbjct: 513 VAGLSVVGRDYYGCFPLRGKLLNVREASADQISKNAEINSLKQIIGLQHKKVYTAENIK- 571
Query: 404 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVE------ 456
+LRY I+I+TD D DG+HI+ L++ F L D G + + P+ KV
Sbjct: 572 -SLRYGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKARGA 630
Query: 457 RGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWE--TTLNPEQRMLKQL 514
GK+V Y E + + + ++ + +KGLG P++ E T L+ + L
Sbjct: 631 GGKRVIPFYTMPEFEHWRDTEGKQCRWTQKYYKGLGTSTPMEAREYFTALDRHLKRFHAL 690
Query: 515 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 551
ED ++ FS + D RKE +Q +LD
Sbjct: 691 QGEDKDYIDLAFSK---KKADERKEWLQGFLPGTHLD 724
>UNIPROTKB|Q5A1E7 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:237561 "Candida
albicans SC5314" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI] [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 255 (94.8 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 105/397 (26%), Positives = 168/397 (42%)
Query: 177 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL-NSLGKKSKTVKDKDISLSGEHVRE 235
SD S + + NSI T GGTH++ V + L +L KK K K + + + VR+
Sbjct: 344 SDG-SFNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKG--KKKLMIKPQEVRD 400
Query: 236 GLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXX 295
+ I+ + NP F QTK +L KV ++ + ++
Sbjct: 401 NMFLFINCLIENPAFTSQTKEQL----TTKVSQFGGKDKFVA----NDNLINRILKTSIV 452
Query: 296 XXXXXXXXXXXXXXVRQKSVLRSSSLPGK--LADCSSTTPEESE---IFIVEGDSAGGSA 350
+++ R S + G+ L D + ++ + + EG SA A
Sbjct: 453 DKIRAIANANEDKALQKADGSRKSRIKGQVNLVDANKAGTKDGHNCTLILTEGLSAMNLA 512
Query: 351 KQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK----GEDFKK 403
G R + PLRGK+LNV + KN EI +L + +GL K E+ K
Sbjct: 513 VAGLSVVGRDYYGCFPLRGKLLNVREASADQISKNAEINSLKQIIGLQHKKVYTAENIK- 571
Query: 404 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVE------ 456
+LRY I+I+TD D DG+HI+ L++ F L D G + + P+ KV
Sbjct: 572 -SLRYGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKARGA 630
Query: 457 RGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWE--TTLNPEQRMLKQL 514
GK+V Y E + + + ++ + +KGLG P++ E T L+ + L
Sbjct: 631 GGKRVIPFYTMPEFEHWRDTEGKQCRWTQKYYKGLGTSTPMEAREYFTALDRHLKRFHAL 690
Query: 515 VIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 551
ED ++ FS + D RKE +Q +LD
Sbjct: 691 QGEDKDYIDLAFSK---KKADERKEWLQGFLPGTHLD 724
>UNIPROTKB|F1P2F2 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0040016 "embryonic cleavage" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042826 "histone
deacetylase binding" evidence=IEA] [GO:0043065 "positive regulation
of apoptotic process" evidence=IEA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005814 "centriole" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0006266 "DNA
ligation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0007059 GO:GO:0005654 GO:GO:0005730
GO:GO:0005814 GO:GO:0008144 GO:GO:0045944 GO:GO:0003682
GO:GO:0006974 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GO:GO:0045870
GeneTree:ENSGT00390000016222 EMBL:AADN02068749 IPI:IPI00571557
Ensembl:ENSGALT00000006249 Uniprot:F1P2F2
Length = 1586
Score = 244 (91.0 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 76/245 (31%), Positives = 121/245 (49%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++ + + G KL D + + S + + EGDSA G GRD+ + P
Sbjct: 450 SAVKHTKIKGVPKLDDANDAGNKNSIDCTLILTEGDSAKTLAVSGLGVVGRDK--YGVFP 507
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 420
LRGK+LNV + +N EI N+I+ +GL K ED + ++LRY KI+I+TD D D
Sbjct: 508 LRGKMLNVREASHKQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQD 567
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 480
G+HI+ LL+ F + +L + + P+ KV + K+ Y E ++ KSS +
Sbjct: 568 GSHIKGLLINFIHHNWPSLLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEEWKSSTQNY 627
Query: 481 ALYSIQRFKGLGEMMPVQLWETTLNPEQRML--KQLVIEDAAEANVVFSSLMGARVDTRK 538
+ I+ +KGLG + E + + + K ED A + FS +V+ RK
Sbjct: 628 NSWKIKYYKGLGTSTSKEAKEYFADMARHRIGFKYSGPEDDAAITLAFSK---KKVEERK 684
Query: 539 ELIQN 543
E + N
Sbjct: 685 EWLTN 689
Score = 61 (26.5 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 196 GGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 254
GG H++ V + T+ ++ + KK+K + + V+ + ++ + NP F+ QT
Sbjct: 344 GGRHVDYVADQIVTKLIDVVKKKNKN----GVGVKPFQVKNHMWIFVNSLIENPTFDSQT 399
Query: 255 KTRL 258
K +
Sbjct: 400 KENM 403
>FB|FBgn0003732 [details] [associations]
symbol:Top2 "Topoisomerase 2" species:7227 "Drosophila
melanogaster" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=NAS;IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0016590 "ACF complex" evidence=IDA] [GO:0008623 "CHRAC"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP;TAS] [GO:0007126
"meiosis" evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005694 "chromosome"
evidence=IDA] [GO:0051310 "metaphase plate congression"
evidence=IDA] [GO:0000819 "sister chromatid segregation"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000182
"rDNA binding" evidence=IDA] [GO:0003696 "satellite DNA binding"
evidence=IDA] [GO:0006342 "chromatin silencing" evidence=IDA]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0044774 "mitotic DNA integrity
checkpoint" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0007095 GO:GO:0007052 EMBL:AE014134 GO:GO:0003729
GO:GO:0006261 GO:GO:0006342 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0007076 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0006312 GO:GO:0008623 GO:GO:0070683
GO:GO:0000712 GO:GO:0003696 GO:GO:0051310 GO:GO:0000182
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0000400 KO:K03164
GeneTree:ENSGT00390000016222 ChiTaRS:TOP2A OMA:AKEYFQD EMBL:X61209
PIR:S02160 RefSeq:NP_476760.1 UniGene:Dm.22886
ProteinModelPortal:P15348 SMR:P15348 STRING:P15348 PaxDb:P15348
PRIDE:P15348 EnsemblMetazoa:FBtr0081287 EnsemblMetazoa:FBtr0332320
GeneID:35225 KEGG:dme:Dmel_CG10223 CTD:35225 FlyBase:FBgn0003732
InParanoid:P15348 OrthoDB:EOG4HQC04 PhylomeDB:P15348
BindingDB:P15348 ChEMBL:CHEMBL2671 GenomeRNAi:35225 NextBio:792468
Bgee:P15348 GermOnline:CG10223 Uniprot:P15348
Length = 1447
Score = 212 (79.7 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 58/187 (31%), Positives = 94/187 (50%)
Query: 317 RSSSLPG--KLADCSSTTPEES---EIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKI 368
+SS + G KL D + + S + + EGDSA A G R + PLRGK+
Sbjct: 411 KSSKIKGIPKLEDANEAGGKNSIKCTLILTEGDSAKSLAVSGLGVIGRDLYGVFPLRGKL 470
Query: 369 LNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE---ALRYHKIIILTDADVDGAHIR 425
LNV + + +N EI NL + +GL K + ++ LRY K++I+TD D DG+HI+
Sbjct: 471 LNVREANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIK 530
Query: 426 TLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSI 485
LL+ F + L + + P+ K + + Y E ++ K+ ++ Y+I
Sbjct: 531 GLLINFIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLPEFEEWKNDTANHHTYNI 590
Query: 486 QRFKGLG 492
+ +KGLG
Sbjct: 591 KYYKGLG 597
Score = 90 (36.7 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLTCIISV 243
+ + NSI T GG H++ V +L + L + KK K+K I++ VR L ++
Sbjct: 292 VSFVNSIATYKGGRHVDHVVDNLIKQLLEVLKK----KNKGGINIKPFQVRNHLWVFVNC 347
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 348 LIENPTFDSQTKENM 362
>ZFIN|ZDB-GENE-030131-2453 [details] [associations]
symbol:top2a "topoisomerase (DNA) II alpha"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007059 "chromosome segregation" evidence=ISS;IMP] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0030261 "chromosome condensation" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0031100 "organ
regeneration" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-030131-2453
GO:GO:0005524 GO:GO:0031100 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 CTD:7153 HOVERGEN:HBG052998
EMBL:AY648832 IPI:IPI00488403 RefSeq:NP_001003834.1
UniGene:Dr.119089 UniGene:Dr.31760 ProteinModelPortal:Q6DRC7
SMR:Q6DRC7 STRING:Q6DRC7 GeneID:323733 KEGG:dre:323733
NextBio:20808410 Uniprot:Q6DRC7
Length = 1574
Score = 221 (82.9 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 62/192 (32%), Positives = 94/192 (48%)
Query: 314 SVLRSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILP 363
S ++ + + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 427 SAVKHTKIKGVPKLDDANDAGGKNSNSCTLILTEGDSAKTLAVSGLGVVGRDR--YGVFP 484
Query: 364 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK---GEDFKKEALRYHKIIILTDADVD 420
LRGK+LNV + +N EI N+I+ LGL K + ++LRY K++I+TD D D
Sbjct: 485 LRGKMLNVREASHKQIMENAEINNIIKILGLQYKKNYSDPESLKSLRYGKLMIMTDQDQD 544
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 480
G+HI+ LL+ F + +L + + P+ K KQ Y E + K S
Sbjct: 545 GSHIKGLLINFIHHNWPSLLRHNFLEEFITPIIKASNKKQEISFYSIPEFTEWKEKQSSI 604
Query: 481 ALYSIQRFKGLG 492
+ I+ +KGLG
Sbjct: 605 KSWKIKYYKGLG 616
Score = 67 (28.6 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 243
+ + NSI GG H + V + L + KK K+K +++ V+ + ++
Sbjct: 310 VSFVNSIDKNKGGRHTDYVADQIVSKLIEVVKK----KNKAGVAVKPFQVKNHMWLFVNC 365
Query: 244 RVPNPEFEGQTKTRL 258
+ NP F+ QTK +
Sbjct: 366 LIENPSFDSQTKENM 380
>DICTYBASE|DDB_G0270418 [details] [associations]
symbol:top2 "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 dictyBase:DDB_G0270418 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
ProtClustDB:PTZ00108 OMA:ADNKQND RefSeq:XP_646786.1 HSSP:P11388
ProteinModelPortal:Q55BP5 SMR:Q55BP5 STRING:Q55BP5 PRIDE:Q55BP5
EnsemblProtists:DDB0231510 GeneID:8617759 KEGG:ddi:DDB_G0270418
Uniprot:Q55BP5
Length = 1521
Score = 241 (89.9 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 89/367 (24%), Positives = 162/367 (44%)
Query: 185 LGYANSIRTIDGGTHIEGVKASLTRTLNS-LGKKSKTVKDKDISLSGEHVREGLTCIISV 243
+ + NSI T+ GGTH+ +++ + + KK+K D + H+ + C+I
Sbjct: 381 VSFVNSICTVKGGTHVTHALSNIVTAIQEQVNKKNKGSADIKPAFIKNHLSVFVNCLIE- 439
Query: 244 RVPNPEFEGQTKTRLGNPEVRKVVD--QSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXX 301
NP F+ QTK L + ++ + ++++ L+ +
Sbjct: 440 ---NPHFDSQTKETLTS-KISSFGSRCEPSEKFIKRVLDSKSGIVASILEFAQFKDQSAL 495
Query: 302 XXXXXXXXVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQGRD--- 355
+ K S+P KL D + T E+ + + EGDSA A G
Sbjct: 496 KRSTSSGGKKGKV-----SIP-KLDDANLAGGTKSEDCTLILTEGDSAKSLATAGISVVG 549
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-LRYHKIIIL 414
+ PL+GK+LNV R + N+EI N++ LGL G+ ++ + LRY ++I+
Sbjct: 550 KDHYGAFPLKGKLLNV-RDQSTKVINNDEINNIVTILGLKY-GKVYETLSDLRYGHLMIM 607
Query: 415 TDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVERGKQVQYC-YDDAELKK 472
TD D DG+HI+ L++ + + TL G + + P+ KV + Q Y E K
Sbjct: 608 TDQDHDGSHIKGLIINMVHHFWPTLLRMPGFLVEFITPIVKVFKNNQKPISFYTMPEFLK 667
Query: 473 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 532
+ + ++ + ++ +KGLG P + E + E+ + ++ A N+ + +
Sbjct: 668 WRET--NDKGWDVKYYKGLGTSTPGEGKEYFSDLERHKI-DFEWDEGANDNIELA-FSKS 723
Query: 533 RVDTRKE 539
R D RK+
Sbjct: 724 RADDRKK 730
Score = 44 (20.5 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 41 EVTVWRDGMEYHQKYSRGKPVTTLTCHVL--PVDSKDRQG 78
E+ VW D H+K S + + +L D+K R+G
Sbjct: 133 ELWVWEDKRMVHRKVSFVPGIYKIFDEILVNAADNKQREG 172
Score = 39 (18.8 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 71 VDSKDRQGTRIRFWPDKQVFTTAIQF 96
+ S +RQ + W DK++ + F
Sbjct: 124 IGSTERQEEELWVWEDKRMVHRKVSF 149
>UNIPROTKB|Q7S9W8 [details] [associations]
symbol:NCU06338 "DNA topoisomerase 2" species:367110
"Neurospora crassa OR74A" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00384 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 KO:K03164 HOGENOM:HOG000216693 OrthoDB:EOG4XPTPZ
EMBL:AABX02000026 RefSeq:XP_962372.2 UniGene:Ncr.23351
ProteinModelPortal:Q7S9W8 SMR:Q7S9W8 STRING:Q7S9W8
EnsemblFungi:EFNCRT00000006113 GeneID:3878536 KEGG:ncr:NCU06338
OMA:FFTLPQY Uniprot:Q7S9W8
Length = 1909
Score = 207 (77.9 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 71/235 (30%), Positives = 112/235 (47%)
Query: 334 EESEIFIVEGDSAGGSAKQGR---DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 390
+E + + EGDSA G A GR D + PLRGK+LNV + KN+E++N+ +
Sbjct: 546 QECTLILTEGDSARGLAVAGRAILDPNRIGVFPLRGKMLNVRDASADQILKNKEVENIKK 605
Query: 391 ALGL--GVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFY-RYQKTLFDEGCIYV 447
LGL G D K LRY ++I+ D D+DG+HI+ LL+ FF ++ L
Sbjct: 606 FLGLKHGKVYTDTKD--LRYGHLMIMADQDLDGSHIKGLLINFFECQFPSLLRIPNFFQE 663
Query: 448 GVPPLYKVERG------KQVQYCYDDAELKKVKSSFPSNAL--YSIQRFKGLGEMMP--V 497
+ P+ KV +G +++Q + + ++ K + N L + + KGLG
Sbjct: 664 FITPVVKVWQGPNPKKPQRLQGFFTLPQYEEWKEAH-RNELRRWKYKYLKGLGSSTTDDA 722
Query: 498 QLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDH 552
QL+ T LN + + E++ + FS + D RKE + LDH
Sbjct: 723 QLYFTNLNKHLKEFDVMTREESEMFELAFSK---KKADARKEWLAKCEPGTYLDH 774
Score = 82 (33.9 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 177 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL-NSLGKKSKTVKDKDISLSGEHVRE 235
SD S + + N+I T GG+H+ + + L L KK K K L +V+
Sbjct: 399 SDG-SFQQVSFVNNIATTSGGSHVNYIADQIIEVLMKELQKK----KGKGHGLKTANVKN 453
Query: 236 GLTCIISVRVPNPEFEGQTKTRL 258
I+ + NP F QTK +L
Sbjct: 454 QFFIFINCLIDNPAFSSQTKEQL 476
Score = 37 (18.1 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 104 RIRELAFLNPKLTIALRKEDSDPEKN 129
++R+ ++ L+ A +K D D KN
Sbjct: 496 KVRQSEAIDNLLSFADKKRDKDLAKN 521
>ASPGD|ASPL0000029372 [details] [associations]
symbol:top2 species:162425 "Emericella nidulans"
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IEA] [GO:0006325 "chromatin organization"
evidence=IEA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0007076 "mitotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 187 (70.9 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
Identities = 67/242 (27%), Positives = 110/242 (45%)
Query: 324 KLADCSSTTPEES---EIFIVEGDSAGGSAKQGR---DRRFQAILPLRGKILNVERKDEA 377
KL D + ++ + + EG+SA G A GR + PLRGK+LNV
Sbjct: 529 KLTDANRAGTKDGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKMLNVRDASFD 588
Query: 378 AMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFY-RYQ 436
+ KNEEIQ++ +GL K E + LRY ++I+TD D DG+HI+ LL+ F ++
Sbjct: 589 QISKNEEIQSIKNFMGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLINFLEAQFP 648
Query: 437 KTLFDEGCIYVGVPPLYKVERG------KQVQYCYDDAELKKVKSSFPSNALYSIQRFKG 490
L + + P+ KV +G KQ + + E K + + +KG
Sbjct: 649 SLLKIPEFLIEFITPIVKVWKGDIKDPTKQHSF-FTIQEYNAWKEKHGHERGWEHKYYKG 707
Query: 491 LGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNL 550
LG + E + + R LK+ + E ++ + +V+ RKE ++ +
Sbjct: 708 LGTSSTEEAQEYFRDLD-RHLKEFHVMQDKEHELIELAFSKKKVEERKEWLRQYNPDTFM 766
Query: 551 DH 552
DH
Sbjct: 767 DH 768
Score = 95 (38.5 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 177 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREG 236
SD S + + NSI T GGTH+ + + L+ KK+K K L +R
Sbjct: 394 SDG-SFKQVSFVNSIATTSGGTHVNYIADQIAGKLSESLKKNK--KGTGSILKPAQIRNY 450
Query: 237 LTCIISVRVPNPEFEGQTKTRLGNPEV----RKVVDQS 270
++ ++ NP F QTK +L + + ++D+S
Sbjct: 451 CFLFVNAKIVNPAFSSQTKEQLTTKQTQFGSKPILDES 488
Score = 37 (18.1 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 38 ESLEVTVWRDG----MEYHQKY 55
E+ E++VW +G +E H+++
Sbjct: 199 ETNEISVWNNGKGIPVEMHEEH 220
>UNIPROTKB|Q5B224 [details] [associations]
symbol:AN5406.2 "DNA topoisomerase 2" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 187 (70.9 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
Identities = 67/242 (27%), Positives = 110/242 (45%)
Query: 324 KLADCSSTTPEES---EIFIVEGDSAGGSAKQGR---DRRFQAILPLRGKILNVERKDEA 377
KL D + ++ + + EG+SA G A GR + PLRGK+LNV
Sbjct: 529 KLTDANRAGTKDGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKMLNVRDASFD 588
Query: 378 AMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFY-RYQ 436
+ KNEEIQ++ +GL K E + LRY ++I+TD D DG+HI+ LL+ F ++
Sbjct: 589 QISKNEEIQSIKNFMGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLINFLEAQFP 648
Query: 437 KTLFDEGCIYVGVPPLYKVERG------KQVQYCYDDAELKKVKSSFPSNALYSIQRFKG 490
L + + P+ KV +G KQ + + E K + + +KG
Sbjct: 649 SLLKIPEFLIEFITPIVKVWKGDIKDPTKQHSF-FTIQEYNAWKEKHGHERGWEHKYYKG 707
Query: 491 LGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNL 550
LG + E + + R LK+ + E ++ + +V+ RKE ++ +
Sbjct: 708 LGTSSTEEAQEYFRDLD-RHLKEFHVMQDKEHELIELAFSKKKVEERKEWLRQYNPDTFM 766
Query: 551 DH 552
DH
Sbjct: 767 DH 768
Score = 95 (38.5 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 177 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREG 236
SD S + + NSI T GGTH+ + + L+ KK+K K L +R
Sbjct: 394 SDG-SFKQVSFVNSIATTSGGTHVNYIADQIAGKLSESLKKNK--KGTGSILKPAQIRNY 450
Query: 237 LTCIISVRVPNPEFEGQTKTRLGNPEV----RKVVDQS 270
++ ++ NP F QTK +L + + ++D+S
Sbjct: 451 CFLFVNAKIVNPAFSSQTKEQLTTKQTQFGSKPILDES 488
Score = 37 (18.1 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 38 ESLEVTVWRDG----MEYHQKY 55
E+ E++VW +G +E H+++
Sbjct: 199 ETNEISVWNNGKGIPVEMHEEH 220
>WB|WBGene00022854 [details] [associations]
symbol:cin-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00433 SMART:SM00434 GO:GO:0005524 GO:GO:0009792
GO:GO:0016246 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:FO081697
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 193 (73.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 69/245 (28%), Positives = 117/245 (47%)
Query: 317 RSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILPLRG 366
++S L G KL D + + S+ + + EGDSA G + GRD+ + P R
Sbjct: 33 KTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YGVFPFRR 90
Query: 367 KILNVERKDEAAMYKNEEIQNLIRALGLGV--KGE---DFKKEALRYHKIIILTDADVDG 421
K+LNV + + + E+ +I+ LGL K E DFK LRY K++I+ + D DG
Sbjct: 91 KLLNVCDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFK--TLRYGKLLIMANHDSDG 148
Query: 422 AHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNA 481
+ + LLL FF+R+ LF + + P+ K GK+ Y E + + + +
Sbjct: 149 SQFKGLLLNFFHRFWPALFKRDFVEDFITPIAKATEGKEEVSFYSLPEYSEWRMNTDNWK 208
Query: 482 LYSIQRFKGLGEMMPVQLWETTLNPEQRML--KQLVIEDAAEANVVFSSL-MGARVDTRK 538
Y+I+ + GLG + + + + + + K +D N+ FS + AR D
Sbjct: 209 SYTIKYYNGLGTLTSKEAKKCFSDMVRHRIRFKYNGADDDKAVNMAFSKKKIEARTDYLM 268
Query: 539 ELIQN 543
+L+Q+
Sbjct: 269 KLMQD 273
>UNIPROTKB|G5ECQ8 [details] [associations]
symbol:cin-4 "Chromosome instability 4" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00433
SMART:SM00434 GO:GO:0005524 GO:GO:0009792 GO:GO:0016246
GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081697 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 193 (73.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 69/245 (28%), Positives = 117/245 (47%)
Query: 317 RSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILPLRG 366
++S L G KL D + + S+ + + EGDSA G + GRD+ + P R
Sbjct: 33 KTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YGVFPFRR 90
Query: 367 KILNVERKDEAAMYKNEEIQNLIRALGLGV--KGE---DFKKEALRYHKIIILTDADVDG 421
K+LNV + + + E+ +I+ LGL K E DFK LRY K++I+ + D DG
Sbjct: 91 KLLNVCDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFK--TLRYGKLLIMANHDSDG 148
Query: 422 AHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNA 481
+ + LLL FF+R+ LF + + P+ K GK+ Y E + + + +
Sbjct: 149 SQFKGLLLNFFHRFWPALFKRDFVEDFITPIAKATEGKEEVSFYSLPEYSEWRMNTDNWK 208
Query: 482 LYSIQRFKGLGEMMPVQLWETTLNPEQRML--KQLVIEDAAEANVVFSSL-MGARVDTRK 538
Y+I+ + GLG + + + + + + K +D N+ FS + AR D
Sbjct: 209 SYTIKYYNGLGTLTSKEAKKCFSDMVRHRIRFKYNGADDDKAVNMAFSKKKIEARTDYLM 268
Query: 539 ELIQN 543
+L+Q+
Sbjct: 269 KLMQD 273
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 555 506 0.00086 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 97
No. of states in DFA: 615 (65 KB)
Total size of DFA: 286 KB (2150 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.27u 0.15s 40.42t Elapsed: 00:00:02
Total cpu time: 40.30u 0.15s 40.45t Elapsed: 00:00:02
Start: Fri May 10 18:22:54 2013 End: Fri May 10 18:22:56 2013