BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008738
(555 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5YLB4|GYRB_NICBE DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana
benthamiana GN=GYRB PE=2 SV=1
Length = 731
Score = 976 bits (2524), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/554 (87%), Positives = 529/554 (95%)
Query: 2 IVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPV 61
++TVLHAGGKFGGSSSGY+VSGGLHGVGLSVVNALS++LEVT+WRDG EY QKYSRGKP+
Sbjct: 178 VLTVLHAGGKFGGSSSGYNVSGGLHGVGLSVVNALSQALEVTIWRDGKEYQQKYSRGKPI 237
Query: 62 TTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRK 121
TTL CH LPV+ +DRQGT IRFWPDK+VFTT +QFD+NTIAGRIRELAFLNP+LTIAL+K
Sbjct: 238 TTLICHDLPVEMRDRQGTAIRFWPDKEVFTTEMQFDYNTIAGRIRELAFLNPELTIALKK 297
Query: 122 EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYS 181
ED DPEK Q NEYF+AGGL EYV+WLN DKKPLHDV+GFRK+ DGITID+ALQWCSDAYS
Sbjct: 298 EDIDPEKIQCNEYFYAGGLVEYVKWLNADKKPLHDVLGFRKEADGITIDMALQWCSDAYS 357
Query: 182 DTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCII 241
DTMLGYANSIRTIDGGTHI+GVKA+LTR LN+LGKKSKT+K+KDISLSGEHVREGLTC+I
Sbjct: 358 DTMLGYANSIRTIDGGTHIDGVKAALTRILNNLGKKSKTIKEKDISLSGEHVREGLTCVI 417
Query: 242 SVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAAL 301
SV+VPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL+ALKAAL
Sbjct: 418 SVKVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLNALKAAL 477
Query: 302 AAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAI 361
AAKRAR+LVRQKSVL+SSSLPGKLADCS+T PEE+EIFIVEGDSAGGSAKQGRDRRFQAI
Sbjct: 478 AAKRARELVRQKSVLKSSSLPGKLADCSATNPEEAEIFIVEGDSAGGSAKQGRDRRFQAI 537
Query: 362 LPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDG 421
LPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKEALRYHKIIILTDADVDG
Sbjct: 538 LPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVDG 597
Query: 422 AHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNA 481
AHIRTLLLTFF+RYQ+ LF+EGCIYVGVPPLYKVERGKQV YCYDDAELKKV+ SFPSNA
Sbjct: 598 AHIRTLLLTFFFRYQRALFEEGCIYVGVPPLYKVERGKQVYYCYDDAELKKVQRSFPSNA 657
Query: 482 LYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI 541
Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV+EDAAEANVVFSSLMG+RVD RK+LI
Sbjct: 658 SYNIQRFKGLGEMMPAQLWETTMNPETRLLKQLVVEDAAEANVVFSSLMGSRVDIRKQLI 717
Query: 542 QNAANLVNLDHLDI 555
QN+A+++NL+ LDI
Sbjct: 718 QNSASMMNLEQLDI 731
>sp|Q94BZ7|GYRBM_ARATH DNA gyrase subunit B, mitochondrial OS=Arabidopsis thaliana
GN=GYRBM PE=2 SV=1
Length = 732
Score = 959 bits (2478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/554 (84%), Positives = 518/554 (93%)
Query: 2 IVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPV 61
++TVLHAGGKFGG+SSGYSVSGGLHGVGLSVVNALSE+LEV+VWRDGME+ Q YSRGKP+
Sbjct: 179 VLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGMEHKQNYSRGKPI 238
Query: 62 TTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRK 121
TTLTC VLP++SK +GT IRFWPDK+VFTTAI+FDHNTIAGRIRELAFLNPK+TI+L+K
Sbjct: 239 TTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAFLNPKVTISLKK 298
Query: 122 EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYS 181
ED DPEK QY+EY FAGGL EYV WLNTDK P+HDV+GFR++++G T+D+ALQWCSDAYS
Sbjct: 299 EDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGATVDVALQWCSDAYS 358
Query: 182 DTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCII 241
DTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISLSGEHVREGLTCI+
Sbjct: 359 DTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGLTCIV 418
Query: 242 SVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAAL 301
SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPD+L+SI+SKSL+A KAAL
Sbjct: 419 SVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESIISKSLNAYKAAL 478
Query: 302 AAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAI 361
AAKRAR+LVR KSVL+SSSLPGKLADCSST PE SEIFIVEGDSAGGSAKQGRDRRFQAI
Sbjct: 479 AAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSAKQGRDRRFQAI 538
Query: 362 LPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDG 421
LPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKE LRYHKIIILTDADVDG
Sbjct: 539 LPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHKIIILTDADVDG 598
Query: 422 AHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNA 481
AHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGK QYCYDDA+LKK+ S+FP+NA
Sbjct: 599 AHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDADLKKITSNFPANA 658
Query: 482 LYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI 541
Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV++D AEAN+ FSSLMGARVD RKELI
Sbjct: 659 SYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLMGARVDVRKELI 718
Query: 542 QNAANLVNLDHLDI 555
+NAA +NL LDI
Sbjct: 719 KNAATRINLQRLDI 732
>sp|Q9SS38|GYRBP_ARATH DNA gyrase subunit B, chloroplastic OS=Arabidopsis thaliana
GN=GYRBC PE=2 SV=3
Length = 730
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/554 (84%), Positives = 516/554 (93%)
Query: 2 IVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPV 61
++TVLHAGGKFGG SSGYSVSGGLHGVGLSVVNALSE+LEV V RDGME+ QKYSRGKPV
Sbjct: 177 VLTVLHAGGKFGGKSSGYSVSGGLHGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPV 236
Query: 62 TTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRK 121
TTLTCHVLP +S+ QGT IRFWPDK+VFTTAIQFDHNTIAGRIRELAFLNPK+TI+L+K
Sbjct: 237 TTLTCHVLPPESRGTQGTCIRFWPDKEVFTTAIQFDHNTIAGRIRELAFLNPKVTISLKK 296
Query: 122 EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYS 181
ED DPE++ Y+EYF+AGGL EYV WLNTDKKPLHDV+GFRK+++G T+D++LQWCSDAYS
Sbjct: 297 EDDDPERDVYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEINGSTVDVSLQWCSDAYS 356
Query: 182 DTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCII 241
DTMLGYANSIRTIDGGTHIEGVKASLTRTLNSL KK K +K+KDISLSGEHVREGLTCI+
Sbjct: 357 DTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGLTCIV 416
Query: 242 SVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAAL 301
SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTEYLELHPDVL+SI+SKSL+A KAAL
Sbjct: 417 SVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKSLNAYKAAL 476
Query: 302 AAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAI 361
AAKRAR+LVR KSVL+SSSLPGKLADCSST P ESEIFIVEGDSAGGSAKQGRDRRFQAI
Sbjct: 477 AAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQGRDRRFQAI 536
Query: 362 LPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDG 421
LPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDF KE LRYHKIIILTDADVDG
Sbjct: 537 LPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDG 596
Query: 422 AHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNA 481
AHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGKQ YCYDDA LKK+ +SFP NA
Sbjct: 597 AHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFPGNA 656
Query: 482 LYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI 541
Y+IQRFKGLGEMMP QLWETT+NP+ R+LKQLV++DAAE N+VFSSLMGARVD RKELI
Sbjct: 657 SYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVDDAAETNMVFSSLMGARVDVRKELI 716
Query: 542 QNAANLVNLDHLDI 555
++AA +NL++LDI
Sbjct: 717 KSAATRMNLENLDI 730
>sp|Q5NBJ3|GYRB_ORYSJ DNA gyrase subunit B, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=GYRB PE=2 SV=1
Length = 729
Score = 910 bits (2351), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/554 (81%), Positives = 509/554 (91%), Gaps = 1/554 (0%)
Query: 2 IVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPV 61
++T++HAGGKFGGS SGY+VSGGLHGVGLSVVNALSE+LEVTVWRDG EY Q YSRGK +
Sbjct: 177 VLTLMHAGGKFGGSKSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKEYRQNYSRGKAI 236
Query: 62 TTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRK 121
T LT L +S RQGTRIRFWPDK +FTT + FD NTIAGRIRELAFLNP+LTIAL K
Sbjct: 237 TMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIALTK 296
Query: 122 EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYS 181
E+ D + Q+NEY +AGGL EYV+WLNTDKK LHD + FRK++DGIT+D++LQWCSD+YS
Sbjct: 297 EEDDLQV-QHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITVDVSLQWCSDSYS 355
Query: 182 DTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCII 241
DT+LGYANSIRTIDGGTHI+G+K SLTRT+N+ KKSKT+KDKDISLSGEHVREG+TCII
Sbjct: 356 DTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTCII 415
Query: 242 SVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAAL 301
+V+VPNPEFEGQTKTRLGNPEVR++V+QSVQE LTEYLELHPDVLDSILSKSL+ALKAAL
Sbjct: 416 AVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAAL 475
Query: 302 AAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAI 361
AAKRAR+LVR KSVL+SSSLPGKLADC+S+ PEESEIFIVEGDSAGGSAKQGRDR+FQAI
Sbjct: 476 AAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSAKQGRDRKFQAI 535
Query: 362 LPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDG 421
LPLRGKILN+ER+DEAA+YKNEEIQNLI ALGLGVKGEDF KEALRYHKI+ILTDADVDG
Sbjct: 536 LPLRGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVILTDADVDG 595
Query: 422 AHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNA 481
AHIRTLLLTFF+RYQK LFDEGCIYVGVPPLYKVERGKQ YCYDDA+LK++ ++FP+NA
Sbjct: 596 AHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTNA 655
Query: 482 LYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI 541
Y IQRFKGLGEMMP QLWETT++PE+RMLKQL +EDAAEANVVFSSLMG RVD RK+LI
Sbjct: 656 SYHIQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTRVDVRKQLI 715
Query: 542 QNAANLVNLDHLDI 555
QNAA++VNL+HLDI
Sbjct: 716 QNAASMVNLEHLDI 729
>sp|P77993|GYRB_THEMA DNA gyrase subunit B OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=gyrB PE=3 SV=2
Length = 636
Score = 544 bits (1402), Expect = e-154, Method: Compositional matrix adjust.
Identities = 282/563 (50%), Positives = 393/563 (69%), Gaps = 25/563 (4%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
++ TVLHAGGKF S Y +SGGLHGVG+SVVNALSE LEV V RDG Y Q+Y RGKP
Sbjct: 91 VVFTVLHAGGKF--SKDSYKISGGLHGVGVSVVNALSEWLEVRVHRDGKIYRQRYERGKP 148
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
VT + + D+ GT +RF PD +F+ +FD + + R+RE+AFL P L I
Sbjct: 149 VTPVEV----IGETDKHGTIVRFKPDPLIFSET-EFDPDILEHRLREIAFLVPGLKI--- 200
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV--------DGITIDLA 172
E D + + F GG+ EYV++LN KK LHDV+ ++ D + +++A
Sbjct: 201 -EFEDRINGEKKTFKFDGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTKNGEDEVIVEIA 259
Query: 173 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 232
Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K++LTR +N GKK +K KD S GE
Sbjct: 260 FQY-TDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLMNEYGKKHNFLK-KDDSFQGED 317
Query: 233 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 292
VREGLT +ISV V NPEFEGQTK++LGN EV++ V ++++E L + + +P+++ +ILSK
Sbjct: 318 VREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAMREELKKIFDANPELVKTILSK 377
Query: 293 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 352
+S +A AAKRAR++VR+K+VL++++LPGKLADCSST E++E+FIVEGDSAGGSAKQ
Sbjct: 378 IMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLADCSSTHREKTELFIVEGDSAGGSAKQ 437
Query: 353 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 412
RDR FQA+LP+RGKILNVE+ + KNE+I ++I A+G G+ G+DF + LRY +II
Sbjct: 438 ARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVAVGTGI-GDDFDESKLRYGRII 496
Query: 413 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 472
I+TDAD+DGAHIRTLLLT FYRY + L ++G +Y+ +PPLY+++ G++ Y Y D EL +
Sbjct: 497 IMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEFYVYSDQELAE 556
Query: 473 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 532
K + IQR+KGLGEM P QLWETT+NPE R + ++ IEDA EA+ +F LMG
Sbjct: 557 YKEKLQGKRI-EIQRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMGN 615
Query: 533 RVDTRKELIQNAANLVNLDHLDI 555
+R+E I+ A + + LDI
Sbjct: 616 DPSSRREFIERHA--LKVKELDI 636
>sp|P05652|GYRB_BACSU DNA gyrase subunit B OS=Bacillus subtilis (strain 168) GN=gyrB PE=3
SV=1
Length = 638
Score = 539 bits (1388), Expect = e-152, Method: Compositional matrix adjust.
Identities = 279/553 (50%), Positives = 380/553 (68%), Gaps = 12/553 (2%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHAGGKF GS GY VSGGLHGVG SVVNALS L+VTV RDG + Q Y RG P
Sbjct: 95 VIMTVLHAGGKFDGS--GYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVP 152
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
VT L + D GT F PD ++F+ ++D++ +A R+RELAFL + I +
Sbjct: 153 VTDLEI----IGETDHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITI- 207
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDA 179
ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+++ALQ+ +D+
Sbjct: 208 -EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQY-NDS 265
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
Y+ + + N+I T +GGTH G K LTR +N +K +K+ D +LSG+ VREGLT
Sbjct: 266 YTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTA 325
Query: 240 IISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKA 299
IIS++ P+P+FEGQTKT+LGN E R + D + ++ +PD I+ K L A +A
Sbjct: 326 IISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARA 385
Query: 300 ALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQ 359
+AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGSAKQGRDR FQ
Sbjct: 386 RMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQ 445
Query: 360 AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADV 419
AILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYHK++I+TDADV
Sbjct: 446 AILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYHKVVIMTDADV 504
Query: 420 DGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 479
DGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D EL+++ + P
Sbjct: 505 DGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKELEELLKTLPQ 564
Query: 480 NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE 539
+QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F LMG +V+ R+
Sbjct: 565 TPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEMLMGDKVEPRRN 624
Query: 540 LIQ-NAANLVNLD 551
I+ NA + NLD
Sbjct: 625 FIEANARYVKNLD 637
>sp|P94604|GYRB_CLOAB DNA gyrase subunit B OS=Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gyrB
PE=3 SV=2
Length = 637
Score = 533 bits (1372), Expect = e-150, Method: Compositional matrix adjust.
Identities = 281/556 (50%), Positives = 384/556 (69%), Gaps = 19/556 (3%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+T+LHAGGKFGG + Y VSGGLHGVG SVVNALSE+ EV V +G + Q Y RGK
Sbjct: 95 VIMTILHAGGKFGGGA--YRVSGGLHGVGASVVNALSETCEVEVKTEGHIWKQTYHRGKV 152
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
+ + D GT+I F PD ++F ++D++T++ R+RELAFLN + I L
Sbjct: 153 ASPFE----KIGDSDEHGTKIYFKPDPEIFEDT-EYDYDTLSQRLRELAFLNKGIKIELT 207
Query: 121 KEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPL-HDVVGFRKDVD-GITIDLALQWCS 177
E D NE F + GGL+ +V +LN +K+ + + + +D ++++ALQ+ +
Sbjct: 208 DERHDK-----NEIFHYEGGLKSFVSYLNRNKEVVFKEPIYVEGSIDSNYSVEIALQY-N 261
Query: 178 DAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGL 237
D Y++ + +AN+I TI+GGTH+ G K +LTR +N KK +K+ D +LSGE +REGL
Sbjct: 262 DGYNENIFSFANNIHTIEGGTHLAGFKTALTRVINDYAKKFGYLKENDKNLSGEDIREGL 321
Query: 238 TCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 297
T ++SV++ P+FEGQTKT+LGN EVR +VD + E ++ YLE +P + ++ K+L A
Sbjct: 322 TAVVSVKLTEPQFEGQTKTKLGNTEVRGIVDSIISERVSTYLEENPQIGKLVIDKALVAS 381
Query: 298 KAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRR 357
+A AAK+AR++ R+KSVL S+SLPGKLADCSS EE EI+IVEGDSAGGSAKQGR+RR
Sbjct: 382 RAREAAKKAREITRRKSVLESTSLPGKLADCSSKDAEECEIYIVEGDSAGGSAKQGRNRR 441
Query: 358 FQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDA 417
FQAILPLRGKI+NVE++ + +EEI+ + A G G+ G+DF LRYHKIII+TDA
Sbjct: 442 FQAILPLRGKIMNVEKQRIDKILNSEEIKAMATAFGGGI-GKDFDVSKLRYHKIIIMTDA 500
Query: 418 DVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSF 477
DVDGAHIRTL+LTFFYRY L EG +++ PPLYKV + ++ Y Y D EL+ V
Sbjct: 501 DVDGAHIRTLILTFFYRYMTELISEGHVFIAQPPLYKVTKTRKEYYAYSDKELEDVLQDV 560
Query: 478 PS-NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDT 536
+ IQR+KGLGEM P QLWETT+NPEQR L ++ IEDA A+ +F+ LMG +VD
Sbjct: 561 GGKDKNTDIQRYKGLGEMNPEQLWETTMNPEQRTLIKVNIEDAMAADEIFTILMGDKVDP 620
Query: 537 RKELI-QNAANLVNLD 551
R++ I +NA +VNLD
Sbjct: 621 RRKFIEENATKVVNLD 636
>sp|O50627|GYRB_BACHD DNA gyrase subunit B OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gyrB PE=3
SV=1
Length = 637
Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust.
Identities = 282/553 (50%), Positives = 376/553 (67%), Gaps = 13/553 (2%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHAGGKFGG S LHGVG SVVNALS LEV V R+G ++QK+ RG P
Sbjct: 95 VIMTVLHAGGKFGGGGYKVSGG--LHGVGASVVNALSTMLEVEVHREGKVHYQKFHRGVP 152
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
L + + DR GT+I F PD +FT F+++T+A R+RELAFLN L I +
Sbjct: 153 AADLEV----IGTTDRTGTKIHFKPDGDIFTETTVFEYDTLASRLRELAFLNKGLRIKIT 208
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITIDLALQWCSDA 179
E+ + +E+ + GG+ +V+ LN ++ LH+ + + G+ +++A+Q+ +D
Sbjct: 209 DMR---EEEKSDEFHYEGGIASFVEHLNRTRETLHETPIHIEGEKQGVYVEIAVQY-NDG 264
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
++ + +AN+I T +GGTH G K LTR +N +K K+ D +L+GE VREGLT
Sbjct: 265 FTSNIYSFANNINTHEGGTHESGFKTGLTRVINDYARKHNLFKESDPNLTGEDVREGLTA 324
Query: 240 IISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKA 299
IISV++P+P+FEGQTKT+LGN E R + D E+ + +L HP V ++ K L A +A
Sbjct: 325 IISVKIPDPQFEGQTKTKLGNSEARTITDSLFTEHFSRFLIEHPQVARKLVDKGLMASRA 384
Query: 300 ALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQ 359
AAK+AR+L R+KS L SSLPGKLADCSS SEI+IVEGDSAGGSAKQGRDR FQ
Sbjct: 385 REAAKKARELTRRKSALEVSSLPGKLADCSSRDASISEIYIVEGDSAGGSAKQGRDRHFQ 444
Query: 360 AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADV 419
AILPLRGKILNVE+ + N EI+ +I ALG G+ G+DF E RYHKIII+TDADV
Sbjct: 445 AILPLRGKILNVEKARLDKILANNEIRAIITALGTGI-GDDFDIEKARYHKIIIMTDADV 503
Query: 420 DGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 479
DGAHIRTL+LTFFYRY + L + G +Y+ PPLYKV++GK +QY Y DAEL+++ S P
Sbjct: 504 DGAHIRTLILTFFYRYMRPLIEHGYVYIAQPPLYKVQQGKDIQYAYGDAELQEILSQLPD 563
Query: 480 NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE 539
A IQR+KGLGEM P QLWETT++P QR + Q+ +EDA +A+ +F LMG RV+ R++
Sbjct: 564 KAKPGIQRYKGLGEMNPSQLWETTMDPGQRTVLQVTLEDAMKADEIFEILMGDRVEPRRD 623
Query: 540 LIQ-NAANLVNLD 551
IQ NA + NLD
Sbjct: 624 FIQENARYVKNLD 636
>sp|Q8CQK4|GYRB_STAES DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC
12228) GN=gyrB PE=3 SV=1
Length = 643
Score = 514 bits (1323), Expect = e-145, Method: Compositional matrix adjust.
Identities = 282/552 (51%), Positives = 372/552 (67%), Gaps = 11/552 (1%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHAGGKFGG S LHGVG SVVNALS+ LEV V R+G YHQ Y +G P
Sbjct: 101 VILTVLHAGGKFGGGGYKVSGG--LHGVGSSVVNALSQDLEVYVHRNGTIYHQAYKQGVP 158
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
L + D+ GT IRF DK++FT +++ T+ RIRELAFLN + I L+
Sbjct: 159 QFDLK----EIGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAFLNKGIQITLK 214
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDA 179
E E+ + + Y + GG++ YV LN +K+PLHD + + D I +++ALQ+ S
Sbjct: 215 DERE--EEVREDSYHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEVEIALQYNS-G 271
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LSGE REGLT
Sbjct: 272 YATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLSGEDTREGLTA 331
Query: 240 IISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKA 299
++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I+ K + A +A
Sbjct: 332 VVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRIIVEKGIMASRA 391
Query: 300 ALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQ 359
+AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS K GRD R Q
Sbjct: 392 RVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSRTQ 451
Query: 360 AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADV 419
AILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYHKI+I+TDADV
Sbjct: 452 AILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYHKIVIMTDADV 510
Query: 420 DGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 479
DGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D EL K+K
Sbjct: 511 DGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKQELNP 570
Query: 480 NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE 539
+ +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F LMG V+ R++
Sbjct: 571 SPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGDVVENRRQ 630
Query: 540 LIQNAANLVNLD 551
I++ A NLD
Sbjct: 631 FIEDNAVYANLD 642
>sp|Q5HK03|GYRB_STAEQ DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=gyrB PE=3 SV=1
Length = 643
Score = 514 bits (1323), Expect = e-145, Method: Compositional matrix adjust.
Identities = 282/552 (51%), Positives = 372/552 (67%), Gaps = 11/552 (1%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHAGGKFGG S LHGVG SVVNALS+ LEV V R+G YHQ Y +G P
Sbjct: 101 VILTVLHAGGKFGGGGYKVSGG--LHGVGSSVVNALSQDLEVYVHRNGTIYHQAYKQGVP 158
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
L + D+ GT IRF DK++FT +++ T+ RIRELAFLN + I L+
Sbjct: 159 QFDLK----EIGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAFLNKGIQITLK 214
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDA 179
E E+ + + Y + GG++ YV LN +K+PLHD + + D I +++ALQ+ S
Sbjct: 215 DERE--EEVREDSYHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEVEIALQYNS-G 271
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LSGE REGLT
Sbjct: 272 YATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLSGEDTREGLTA 331
Query: 240 IISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKA 299
++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I+ K + A +A
Sbjct: 332 VVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRIIVEKGIMASRA 391
Query: 300 ALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQ 359
+AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS K GRD R Q
Sbjct: 392 RVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSRTQ 451
Query: 360 AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADV 419
AILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYHKI+I+TDADV
Sbjct: 452 AILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYHKIVIMTDADV 510
Query: 420 DGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 479
DGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D EL K+K
Sbjct: 511 DGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKQELNP 570
Query: 480 NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE 539
+ +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F LMG V+ R++
Sbjct: 571 SPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGDVVENRRQ 630
Query: 540 LIQNAANLVNLD 551
I++ A NLD
Sbjct: 631 FIEDNAVYANLD 642
>sp|Q9X3Y6|GYRB_BACAN DNA gyrase subunit B OS=Bacillus anthracis GN=gyrB PE=3 SV=2
Length = 640
Score = 506 bits (1304), Expect = e-142, Method: Compositional matrix adjust.
Identities = 279/555 (50%), Positives = 379/555 (68%), Gaps = 17/555 (3%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHAGGKFGG S LHGVG SVVNALS LEV V R+G ++QKY RG P
Sbjct: 98 VIMTVLHAGGKFGGGGYKVSGG--LHGVGASVVNALSTELEVFVHREGKIHYQKYERGIP 155
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP--KLTIA 118
V L + D+ GT RF PD ++F ++ +T+A R+RELAFLN KLTI
Sbjct: 156 VADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIE 211
Query: 119 LRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCS 177
++E Q E+ + GG++ YV+ LN K+P+H+ V DGI ++++LQ+ +
Sbjct: 212 DKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQY-N 265
Query: 178 DAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGL 237
+ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +L+GE VREGL
Sbjct: 266 EGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGL 325
Query: 238 TCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 297
T I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V I+ K A
Sbjct: 326 TAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAA 385
Query: 298 KAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRR 357
+A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAGGSAKQGRDR
Sbjct: 386 RARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRH 445
Query: 358 FQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDA 417
FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E RYHK+II+TDA
Sbjct: 446 FQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKARYHKVIIMTDA 504
Query: 418 DVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSF 477
DVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++ EL+K+ +
Sbjct: 505 DVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNEKELEKILAEL 564
Query: 478 PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTR 537
P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F LMG +V+ R
Sbjct: 565 PAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPR 624
Query: 538 KELIQ-NAANLVNLD 551
+ IQ NA + NLD
Sbjct: 625 RNFIQENAKYVKNLD 639
>sp|Q5HJZ1|GYRB_STAAC DNA gyrase subunit B OS=Staphylococcus aureus (strain COL) GN=gyrB
PE=3 SV=3
Length = 644
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 283/552 (51%), Positives = 373/552 (67%), Gaps = 10/552 (1%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHAGGKFGG S LHGVG SVVNALS+ LEV V R+ YHQ Y +G P
Sbjct: 101 VILTVLHAGGKFGGGGYKVSGG--LHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVP 158
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN + I LR
Sbjct: 159 QFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLR 214
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDA 179
E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A+Q+ S
Sbjct: 215 DE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIAIQYNS-G 272
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LSGE REG+T
Sbjct: 273 YATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTA 332
Query: 240 IISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKA 299
IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K + A +A
Sbjct: 333 IISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARA 392
Query: 300 ALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQ 359
+AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K GRD R Q
Sbjct: 393 RVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQ 452
Query: 360 AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADV 419
AILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+I+TDADV
Sbjct: 453 AILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIVIMTDADV 511
Query: 420 DGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 479
DGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K+KS
Sbjct: 512 DGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSELNP 571
Query: 480 NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE 539
+SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG V+ R++
Sbjct: 572 TPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQ 631
Query: 540 LIQNAANLVNLD 551
I++ A NLD
Sbjct: 632 FIEDNAVYANLD 643
>sp|P66937|GYRB_STAAN DNA gyrase subunit B OS=Staphylococcus aureus (strain N315) GN=gyrB
PE=1 SV=2
Length = 644
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 283/552 (51%), Positives = 373/552 (67%), Gaps = 10/552 (1%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHAGGKFGG S LHGVG SVVNALS+ LEV V R+ YHQ Y +G P
Sbjct: 101 VILTVLHAGGKFGGGGYKVSGG--LHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVP 158
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN + I LR
Sbjct: 159 QFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLR 214
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDA 179
E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A+Q+ S
Sbjct: 215 DE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIAIQYNS-G 272
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LSGE REG+T
Sbjct: 273 YATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTA 332
Query: 240 IISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKA 299
IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K + A +A
Sbjct: 333 IISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARA 392
Query: 300 ALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQ 359
+AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K GRD R Q
Sbjct: 393 RVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQ 452
Query: 360 AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADV 419
AILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+I+TDADV
Sbjct: 453 AILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIVIMTDADV 511
Query: 420 DGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 479
DGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K+KS
Sbjct: 512 DGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSELNP 571
Query: 480 NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE 539
+SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG V+ R++
Sbjct: 572 TPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQ 631
Query: 540 LIQNAANLVNLD 551
I++ A NLD
Sbjct: 632 FIEDNAVYANLD 643
>sp|P66936|GYRB_STAAM DNA gyrase subunit B OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=gyrB PE=1 SV=2
Length = 644
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 283/552 (51%), Positives = 373/552 (67%), Gaps = 10/552 (1%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHAGGKFGG S LHGVG SVVNALS+ LEV V R+ YHQ Y +G P
Sbjct: 101 VILTVLHAGGKFGGGGYKVSGG--LHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVP 158
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN + I LR
Sbjct: 159 QFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLR 214
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDA 179
E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A+Q+ S
Sbjct: 215 DE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIAIQYNS-G 272
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LSGE REG+T
Sbjct: 273 YATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTA 332
Query: 240 IISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKA 299
IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K + A +A
Sbjct: 333 IISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARA 392
Query: 300 ALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQ 359
+AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K GRD R Q
Sbjct: 393 RVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQ 452
Query: 360 AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADV 419
AILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+I+TDADV
Sbjct: 453 AILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIVIMTDADV 511
Query: 420 DGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 479
DGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K+KS
Sbjct: 512 DGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSELNP 571
Query: 480 NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE 539
+SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG V+ R++
Sbjct: 572 TPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQ 631
Query: 540 LIQNAANLVNLD 551
I++ A NLD
Sbjct: 632 FIEDNAVYANLD 643
>sp|P0A0K7|GYRB_STAAW DNA gyrase subunit B OS=Staphylococcus aureus (strain MW2) GN=gyrB
PE=3 SV=2
Length = 644
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 283/552 (51%), Positives = 373/552 (67%), Gaps = 10/552 (1%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHAGGKFGG S LHGVG SVVNALS+ LEV V R+ YHQ Y +G P
Sbjct: 101 VILTVLHAGGKFGGGGYKVSGG--LHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVP 158
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN + I LR
Sbjct: 159 QFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLR 214
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDA 179
E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A+Q+ S
Sbjct: 215 DE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIAIQYNS-G 272
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LSGE REG+T
Sbjct: 273 YATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTA 332
Query: 240 IISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKA 299
IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K + A +A
Sbjct: 333 IISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARA 392
Query: 300 ALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQ 359
+AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K GRD R Q
Sbjct: 393 RVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQ 452
Query: 360 AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADV 419
AILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+I+TDADV
Sbjct: 453 AILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIVIMTDADV 511
Query: 420 DGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 479
DGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K+KS
Sbjct: 512 DGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSELNP 571
Query: 480 NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE 539
+SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG V+ R++
Sbjct: 572 TPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQ 631
Query: 540 LIQNAANLVNLD 551
I++ A NLD
Sbjct: 632 FIEDNAVYANLD 643
>sp|P0A0K8|GYRB_STAAU DNA gyrase subunit B OS=Staphylococcus aureus GN=gyrB PE=1 SV=2
Length = 644
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 283/552 (51%), Positives = 373/552 (67%), Gaps = 10/552 (1%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHAGGKFGG S LHGVG SVVNALS+ LEV V R+ YHQ Y +G P
Sbjct: 101 VILTVLHAGGKFGGGGYKVSGG--LHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVP 158
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN + I LR
Sbjct: 159 QFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLR 214
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDA 179
E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A+Q+ S
Sbjct: 215 DE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIAIQYNS-G 272
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LSGE REG+T
Sbjct: 273 YATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTA 332
Query: 240 IISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKA 299
IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K + A +A
Sbjct: 333 IISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARA 392
Query: 300 ALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQ 359
+AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K GRD R Q
Sbjct: 393 RVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQ 452
Query: 360 AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADV 419
AILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+I+TDADV
Sbjct: 453 AILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIVIMTDADV 511
Query: 420 DGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 479
DGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K+KS
Sbjct: 512 DGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSELNP 571
Query: 480 NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE 539
+SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG V+ R++
Sbjct: 572 TPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQ 631
Query: 540 LIQNAANLVNLD 551
I++ A NLD
Sbjct: 632 FIEDNAVYANLD 643
>sp|Q6GD85|GYRB_STAAS DNA gyrase subunit B OS=Staphylococcus aureus (strain MSSA476)
GN=gyrB PE=3 SV=3
Length = 644
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 283/552 (51%), Positives = 373/552 (67%), Gaps = 10/552 (1%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHAGGKFGG S LHGVG SVVNALS+ LEV V R+ YHQ Y +G P
Sbjct: 101 VILTVLHAGGKFGGGGYKVSGG--LHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVP 158
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN + I LR
Sbjct: 159 QFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLR 214
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDA 179
E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A+Q+ S
Sbjct: 215 DE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIAIQYNS-G 272
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LSGE REG+T
Sbjct: 273 YATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTA 332
Query: 240 IISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKA 299
IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K + A +A
Sbjct: 333 IISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARA 392
Query: 300 ALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQ 359
+AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K GRD R Q
Sbjct: 393 RVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQ 452
Query: 360 AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADV 419
AILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+I+TDADV
Sbjct: 453 AILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIVIMTDADV 511
Query: 420 DGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 479
DGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K+KS
Sbjct: 512 DGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSELNP 571
Query: 480 NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE 539
+SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG V+ R++
Sbjct: 572 TPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQ 631
Query: 540 LIQNAANLVNLD 551
I++ A NLD
Sbjct: 632 FIEDNAVYANLD 643
>sp|Q2FKQ1|GYRB_STAA3 DNA gyrase subunit B OS=Staphylococcus aureus (strain USA300)
GN=gyrB PE=3 SV=3
Length = 644
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 283/552 (51%), Positives = 373/552 (67%), Gaps = 10/552 (1%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHAGGKFGG S LHGVG SVVNALS+ LEV V R+ YHQ Y +G P
Sbjct: 101 VILTVLHAGGKFGGGGYKVSGG--LHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVP 158
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN + I LR
Sbjct: 159 QFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLR 214
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDA 179
E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A+Q+ S
Sbjct: 215 DE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIAIQYNS-G 272
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LSGE REG+T
Sbjct: 273 YATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTA 332
Query: 240 IISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKA 299
IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K + A +A
Sbjct: 333 IISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARA 392
Query: 300 ALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQ 359
+AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K GRD R Q
Sbjct: 393 RVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQ 452
Query: 360 AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADV 419
AILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+I+TDADV
Sbjct: 453 AILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIVIMTDADV 511
Query: 420 DGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 479
DGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K+KS
Sbjct: 512 DGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSELNP 571
Query: 480 NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE 539
+SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG V+ R++
Sbjct: 572 TPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQ 631
Query: 540 LIQNAANLVNLD 551
I++ A NLD
Sbjct: 632 FIEDNAVYANLD 643
>sp|Q6GKU0|GYRB_STAAR DNA gyrase subunit B OS=Staphylococcus aureus (strain MRSA252)
GN=gyrB PE=3 SV=3
Length = 644
Score = 504 bits (1298), Expect = e-142, Method: Compositional matrix adjust.
Identities = 283/552 (51%), Positives = 372/552 (67%), Gaps = 10/552 (1%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHAGGKFGG S LHGVG SVVNALS+ LEV V R+ YHQ Y +G P
Sbjct: 101 VILTVLHAGGKFGGGGYKVSGG--LHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVP 158
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN + I LR
Sbjct: 159 QFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLR 214
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDA 179
E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A+Q+ S
Sbjct: 215 DE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIAIQYNS-G 272
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K+ LSGE REG+T
Sbjct: 273 YATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEDKDRLSGEDTREGMTA 332
Query: 240 IISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKA 299
IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K + A +A
Sbjct: 333 IISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARA 392
Query: 300 ALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQ 359
+AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K GRD R Q
Sbjct: 393 RVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQ 452
Query: 360 AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADV 419
AILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+I+TDADV
Sbjct: 453 AILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIVIMTDADV 511
Query: 420 DGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 479
DGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K+KS
Sbjct: 512 DGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSELNP 571
Query: 480 NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKE 539
+SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG V+ R++
Sbjct: 572 TPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQ 631
Query: 540 LIQNAANLVNLD 551
I++ A NLD
Sbjct: 632 FIEDNAVYANLD 643
>sp|O29720|GYRB_ARCFU DNA gyrase subunit B OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=gyrB PE=3
SV=2
Length = 632
Score = 494 bits (1272), Expect = e-139, Method: Compositional matrix adjust.
Identities = 264/552 (47%), Positives = 372/552 (67%), Gaps = 17/552 (3%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+++T LHAGGKF S Y VSGGLHGVG+SVVNALSE LEV V R+G Y+QKY RG
Sbjct: 96 IVMTKLHAGGKF--SKKVYRVSGGLHGVGVSVVNALSEWLEVWVKRNGKIYYQKYQRGSR 153
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
+ GT +RF PD+++F T +F + +A R++ELA+LN L I L
Sbjct: 154 SPEAGHRTEVLGETKEHGTTVRFKPDREIFETT-EFKYEIVAQRLKELAYLNRGLKIILF 212
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAY 180
E E+ + F G+ V+ LN ++KPLH+ + DG+++++A+Q+ +D+
Sbjct: 213 DEREGKEET----FHFEDGIIGLVRSLNRNRKPLHEPIYIETTKDGVSVEVAIQF-TDSD 267
Query: 181 SDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCI 240
+ + +AN+I T +GG+H+ G +A LTR +N GKK K ++G +REGLT +
Sbjct: 268 VENIQAFANNINTSEGGSHVVGFRAGLTRAVNEYGKKHLK---KFEPVTGVDIREGLTAV 324
Query: 241 ISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAA 300
ISV+VP P+FEGQTKT+L N +V+ VV+ +V + +LE +P +++L+K + KA
Sbjct: 325 ISVKVPEPQFEGQTKTKLTNSDVKTVVESAVYSGVLRWLEENPAQAETLLNKFILNKKAR 384
Query: 301 LAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQA 360
AAKRA++LV++K+ L ++LPGKLADCSS PEE E+FIVEG+SAGGSAKQ RDRRFQA
Sbjct: 385 EAAKRAKELVKRKNEL-ITTLPGKLADCSSKNPEERELFIVEGESAGGSAKQARDRRFQA 443
Query: 361 ILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVD 420
ILP++GKI+NVE+ A + KN+EI+ +I A+G G+ G+DF RY +III+TDADVD
Sbjct: 444 ILPIKGKIINVEKAGMARVLKNDEIKAIISAIGAGI-GKDFDITKARYRRIIIMTDADVD 502
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSN 480
GAHIRTLLLTFFYRY + L + G +Y+ PPLY++++GK+ Y Y D ELK+
Sbjct: 503 GAHIRTLLLTFFYRYMRPLIESGYLYIAQPPLYQIKKGKKSYYAYSDEELKRTLEQVGGG 562
Query: 481 ALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKEL 540
+QR+KGLGEM P QLWETT+NPE R+L Q+ +EDA A+ +FS LMG V++R+
Sbjct: 563 ---EVQRYKGLGEMNPQQLWETTMNPENRILIQVTLEDAKRADELFSILMGEDVESRRNF 619
Query: 541 IQ-NAANLVNLD 551
I ++ + NLD
Sbjct: 620 IMAHSKEVKNLD 631
>sp|P0DG05|GYRB_STRPQ DNA gyrase subunit B OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=gyrB PE=3 SV=1
Length = 650
Score = 491 bits (1264), Expect = e-138, Method: Compositional matrix adjust.
Identities = 259/557 (46%), Positives = 377/557 (67%), Gaps = 17/557 (3%)
Query: 2 IVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPV 61
+ TVLHAGGKFGG S Y VSGGLHGVG SVVNALS L+V V+++G ++Q++ RG V
Sbjct: 103 VFTVLHAGGKFGGGS--YKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVV 160
Query: 62 TTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRK 121
L + + D GT + F PD ++FT QFD++ +A RI+ELAFLN L I++
Sbjct: 161 ADLEV----IGTTDVTGTTVHFTPDPEIFTETTQFDYSVLAKRIQELAFLNRGLKISITD 216
Query: 122 EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITIDLALQWCSDAY 180
+ S E+ ++ + + GG+ YV++LN K + + + +++GI +++A+Q+ + +Y
Sbjct: 217 KRSGMEQEEH--FHYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGIAVEVAMQYTT-SY 273
Query: 181 SDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCI 240
+T++ +AN+I T +GGTH +G +A+LTR +N KK+K +K+ + +L+GE VREGLT +
Sbjct: 274 QETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDNLTGEDVREGLTAV 333
Query: 241 ISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAA 300
ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V I+ K + A KA
Sbjct: 334 ISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKAR 393
Query: 301 LAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQA 360
+AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGSAK GR+R FQA
Sbjct: 394 IAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQA 453
Query: 361 ILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVD 420
ILP+RGKILNVE+ + NEEI++L A+G G G DF RY K++I+TDADVD
Sbjct: 454 ILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQKLVIMTDADVD 512
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY----DDAELKKVKS 475
GAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y + +LK
Sbjct: 513 GAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALE 572
Query: 476 SFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARV 534
+ + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+ VF LMG RV
Sbjct: 573 KYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRV 632
Query: 535 DTRKELIQNAANLVNLD 551
+ R++ I+ A LD
Sbjct: 633 EPRRDFIEENAVYSTLD 649
>sp|P0DG04|GYRB_STRP3 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=gyrB PE=3 SV=1
Length = 650
Score = 491 bits (1264), Expect = e-138, Method: Compositional matrix adjust.
Identities = 259/557 (46%), Positives = 377/557 (67%), Gaps = 17/557 (3%)
Query: 2 IVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPV 61
+ TVLHAGGKFGG S Y VSGGLHGVG SVVNALS L+V V+++G ++Q++ RG V
Sbjct: 103 VFTVLHAGGKFGGGS--YKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVV 160
Query: 62 TTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRK 121
L + + D GT + F PD ++FT QFD++ +A RI+ELAFLN L I++
Sbjct: 161 ADLEV----IGTTDVTGTTVHFTPDPEIFTETTQFDYSVLAKRIQELAFLNRGLKISITD 216
Query: 122 EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITIDLALQWCSDAY 180
+ S E+ ++ + + GG+ YV++LN K + + + +++GI +++A+Q+ + +Y
Sbjct: 217 KRSGMEQEEH--FHYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGIAVEVAMQYTT-SY 273
Query: 181 SDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCI 240
+T++ +AN+I T +GGTH +G +A+LTR +N KK+K +K+ + +L+GE VREGLT +
Sbjct: 274 QETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDNLTGEDVREGLTAV 333
Query: 241 ISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAA 300
ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V I+ K + A KA
Sbjct: 334 ISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKAR 393
Query: 301 LAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQA 360
+AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGSAK GR+R FQA
Sbjct: 394 IAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQA 453
Query: 361 ILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVD 420
ILP+RGKILNVE+ + NEEI++L A+G G G DF RY K++I+TDADVD
Sbjct: 454 ILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQKLVIMTDADVD 512
Query: 421 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY----DDAELKKVKS 475
GAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y + +LK
Sbjct: 513 GAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALE 572
Query: 476 SFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARV 534
+ + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+ VF LMG RV
Sbjct: 573 KYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRV 632
Query: 535 DTRKELIQNAANLVNLD 551
+ R++ I+ A LD
Sbjct: 633 EPRRDFIEENAVYSTLD 649
>sp|D4GZ01|GYRB_HALVD DNA gyrase subunit B OS=Haloferax volcanii (strain ATCC 29605 / DSM
3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 /
DS2) GN=gyrB PE=1 SV=1
Length = 639
Score = 489 bits (1260), Expect = e-137, Method: Compositional matrix adjust.
Identities = 268/548 (48%), Positives = 368/548 (67%), Gaps = 11/548 (2%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHAGGKF S Y VSGGLHGVG+SVVNALS LEV V RDG + ++ G+P
Sbjct: 94 VIMTVLHAGGKFDNKS--YQVSGGLHGVGVSVVNALSSELEVEVKRDGAVWTHRFEVGEP 151
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
V ++ + GT IRFWPD +F T +FD T+ R+RELAFLN + I+L
Sbjct: 152 QVEEFERVRDLEPGEDTGTTIRFWPDDGIFETT-EFDFKTLENRLRELAFLNSGVEISL- 209
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDA 179
SD ++ + + F GG+ E+V++LN K LHD V+ + + +GI +++A+Q +D
Sbjct: 210 ---SDERTDESSTFLFEGGIREFVEYLNETKTALHDDVIYYDDESEGIEVEIAMQ-ATDE 265
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLT 238
++ +AN+I T +GGTH+ G K +LTR +N + D D +L GE VREGLT
Sbjct: 266 LQGSIHAFANNINTREGGTHLTGFKTALTRVVNDYANTHDMLDDLDGDNLRGEDVREGLT 325
Query: 239 CIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALK 298
+IS++ P+P+FEGQTKT+LGN EVR +V+ + L + E +PD +I+SK++ A +
Sbjct: 326 AVISIKHPDPQFEGQTKTKLGNSEVRGIVESVTHQQLGTFFEENPDTATAIISKAVEAAR 385
Query: 299 AALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRF 358
A AAK+A +L R+KS L S+SLPGKLADC S P ESE+FIVEGDSAGGSAKQGRDR+F
Sbjct: 386 ARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPAESELFIVEGDSAGGSAKQGRDRKF 445
Query: 359 QAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDAD 418
QAILPL+GKILNVE+ + +N+EI+ LI A+G GV G++F E RY ++I++TDAD
Sbjct: 446 QAILPLKGKILNVEKHRLDRILENDEIRALITAIGGGV-GDEFDIEKARYQRLILMTDAD 504
Query: 419 VDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFP 478
VDGAHIRTLLLT YR+ + L + G +Y PPLY+V D+AE ++
Sbjct: 505 VDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPPLYRVRYRGNTYDAMDEAERDRIIEEEC 564
Query: 479 SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRK 538
+ +QRFKGLGEM P QLW+TT+NPE R+LK++ +EDAA A+ +F+ LMG V RK
Sbjct: 565 NGNPTQVQRFKGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNILMGDAVGPRK 624
Query: 539 ELIQNAAN 546
+ I++ AN
Sbjct: 625 QFIKDHAN 632
>sp|P21558|GYRB_HALL2 DNA gyrase subunit B OS=Haloferax lucentense (strain DSM 14919 /
JCM 9276 / NCIMB 13854 / Aa 2.2) GN=gyrB PE=3 SV=1
Length = 639
Score = 488 bits (1255), Expect = e-137, Method: Compositional matrix adjust.
Identities = 267/548 (48%), Positives = 367/548 (66%), Gaps = 11/548 (2%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+I+TVLHAGGKF S Y VSGGLHGVG++VVNALS LEV V DG + ++ G+P
Sbjct: 94 VIMTVLHAGGKFDNKS--YQVSGGLHGVGVTVVNALSSELEVEVKHDGAVWTHRFEVGEP 151
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
V ++ + GT IRFWPD +F T +FD T+ R+RELAFLN + I+L
Sbjct: 152 QVEEFERVRDLEPGEDTGTTIRFWPDDGIFETT-EFDFKTLENRLRELAFLNSGVEISL- 209
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDA 179
SD ++ + + F GG+ E+V++LN K LHD V+ + + +GI +++A+Q +D
Sbjct: 210 ---SDERTDESSTFLFEGGIREFVEYLNETKTALHDDVIYYDDESEGIEVEIAMQ-ATDE 265
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLT 238
++ +AN+I T +GGTH+ G K +LTR +N + D D +L GE VREGLT
Sbjct: 266 LQGSIHAFANNINTREGGTHLTGFKTALTRVVNDYANSHDMLDDLDGDNLRGEDVREGLT 325
Query: 239 CIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALK 298
+ISV+ P+P+FEGQTKT+LGN EVR +V+ + L + E +PD +I+SK++ A +
Sbjct: 326 AVISVKHPDPQFEGQTKTKLGNSEVRGIVESVTHQQLGTFFEENPDTATAIISKAVEAAR 385
Query: 299 AALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRF 358
A AAK+A +L R+KS L S+SLPGKLADC S P ESE+FIVEGDSAGGSAKQGRDR+F
Sbjct: 386 ARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPSESELFIVEGDSAGGSAKQGRDRKF 445
Query: 359 QAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDAD 418
QAILPL+GKILNVE+ + +N+EI+ LI A+G GV G++F E RY ++I++TDAD
Sbjct: 446 QAILPLKGKILNVEKHRLDRILENDEIRALITAIGGGV-GDEFDIEKARYQRLILMTDAD 504
Query: 419 VDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFP 478
VDGAHIRTLLLT YR+ + L + G +Y PPLY+V D+AE ++
Sbjct: 505 VDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPPLYRVRYRGNTYDAMDEAERDRIIEEEC 564
Query: 479 SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRK 538
+ +QRFKGLGEM P QLW+TT+NPE R+LK++ +EDAA A+ +F+ LMG V RK
Sbjct: 565 NGNPTQVQRFKGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNILMGDAVGPRK 624
Query: 539 ELIQNAAN 546
+ I++ AN
Sbjct: 625 QFIKDHAN 632
>sp|P33769|GYRB_BORBU DNA gyrase subunit B OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=gyrB PE=3 SV=4
Length = 634
Score = 483 bits (1243), Expect = e-135, Method: Compositional matrix adjust.
Identities = 261/559 (46%), Positives = 379/559 (67%), Gaps = 23/559 (4%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+++T LH+GGKF + Y VSGGLHGVG+SVVNALS LEV V RDG + Q +S+G P
Sbjct: 90 LVLTKLHSGGKFNKGT--YKVSGGLHGVGISVVNALSSFLEVYVNRDGKIFRQTFSKGIP 147
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
T V V GT++ F D ++F T + ++ + + R++ELAFLN K+ I++
Sbjct: 148 ----TSKVEVVGESSVTGTKVTFLADSEIFET-LDYNFDVLEKRLKELAFLNDKIYISI- 201
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDGITIDLALQWC 176
ED K + ++++F GG++ +V +L D K + GF DV +++ L+W
Sbjct: 202 -EDKRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSEPYYIDGFINDV---IVNVGLKW- 256
Query: 177 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREG 236
+++YSD +L + N+I T +GGTH+ G ++ LT+ +N K SK K +L+G+ +EG
Sbjct: 257 TESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSKISKKDIPNLTGDDFKEG 316
Query: 237 LTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSA 296
LT +ISV+VP P+FEGQTK++LGN E+RK+V+ V E+L E + L+P +D+IL K++ A
Sbjct: 317 LTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEIINLNPLEIDTILGKAIKA 376
Query: 297 LKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDR 356
+A AA++AR+ R+K+ S +LPGKLADC+S P E EI+IVEGDSAGGSAK GR+R
Sbjct: 377 ARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIYIVEGDSAGGSAKMGRNR 436
Query: 357 RFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTD 416
FQAILPL GK+LNVE+ E + N+++ +I +LG GV G+ F LRYHKIII+ D
Sbjct: 437 FFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGV-GKTFDITKLRYHKIIIMAD 495
Query: 417 ADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSS 476
ADVDG+HIRTLLL FF+RY + L + G IY+ +PPLYK++ ++ Y Y++ E +K S
Sbjct: 496 ADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYEEKEKEKFLDS 555
Query: 477 FPS---NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 533
+ N++ S+QR+KGLGEM P QLWETT++P +R ++ + I+DA EA +F +LMG
Sbjct: 556 IETKNRNSI-SLQRYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIFVTLMGDL 614
Query: 534 VDTRKELI-QNAANLVNLD 551
V+ RKE I QNA N++NLD
Sbjct: 615 VEPRKEFIEQNALNVINLD 633
>sp|O87545|GYRB_TREDE DNA gyrase subunit B OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=gyrB PE=3 SV=1
Length = 638
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 257/556 (46%), Positives = 368/556 (66%), Gaps = 16/556 (2%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+++T LHAGGKF S Y VSGGLHGVG+SVVNALS +E V++DG E++ K+ +G
Sbjct: 93 LVLTRLHAGGKFDKGS--YKVSGGLHGVGVSVVNALSVWMEAKVYKDGFEHYAKFEKG-- 148
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
++ V + ++ GT IR+ D +FT ++ +A R+RELAFLN K++I +R
Sbjct: 149 --SILEPVKKIGETEKSGTVIRWAVDPSIFTETTVYNFEVLATRLRELAFLNSKISITMR 206
Query: 121 KED-SDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITIDLALQWCSD 178
E S P++ + F GG+ ++V +LN K+ V + + I ++A+Q+ +D
Sbjct: 207 DERLSTPKEVTFA---FEGGISQFVSYLNESKQVFPKSPVFIEGEKNDILCEVAIQY-ND 262
Query: 179 AYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK-SKTVK--DKDISLSGEHVRE 235
Y++ +L + N I T +GGTH+EG K +LTR +N KK K VK DK+ L+GE VR
Sbjct: 263 GYNENLLSFVNDINTREGGTHLEGFKTALTRVMNDFLKKYPKLVKKMDKEEKLTGEDVRA 322
Query: 236 GLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLS 295
GLT I+SV+VP P+FEGQTKT+LGN +VR +VD V E LT + E +P+ ++ +L K ++
Sbjct: 323 GLTAIVSVKVPEPQFEGQTKTKLGNSDVRGIVDSFVNEKLTLFFEQNPNEVEKVLEKCVA 382
Query: 296 ALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
A +AA+RA++ R+KS L S LPGKLADCS PE E++IVEGDSAGGSAK+GRD
Sbjct: 383 EAAARIAARRAKEATRRKSGLDSFGLPGKLADCSLKDPESCEVYIVEGDSAGGSAKKGRD 442
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
+ QAILPL GK+LNVE+ + NE++Q +I LG G+ G+DF E LRYHK+II+
Sbjct: 443 SKTQAILPLWGKMLNVEKTRLDKVVNNEKLQPIIATLGTGI-GKDFNIEKLRYHKVIIMA 501
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKS 475
DADVDG+HIRTLLLTFF+RY + ++G +Y+ +PPLYK+ K+ Y Y+D E V
Sbjct: 502 DADVDGSHIRTLLLTFFFRYMPQVIEKGHVYLAMPPLYKISHNKKEWYVYNDDERDSVLD 561
Query: 476 SFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVD 535
++QR+KGLGEM QLWETT++P +R + ++ + DA EA+ +FS+LMG V+
Sbjct: 562 QIGRGNNAAVQRYKGLGEMDGTQLWETTMDPARRKMMRVTLPDAVEADRIFSTLMGEEVE 621
Query: 536 TRKELIQNAANLVNLD 551
R++ I+ A NLD
Sbjct: 622 PRRKFIEENAVYANLD 637
>sp|P34031|GYRB_SPICI DNA gyrase subunit B OS=Spiroplasma citri GN=gyrB PE=3 SV=1
Length = 640
Score = 470 bits (1210), Expect = e-131, Method: Compositional matrix adjust.
Identities = 254/558 (45%), Positives = 364/558 (65%), Gaps = 19/558 (3%)
Query: 2 IVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPV 61
+ T+LHAGGKF S+ Y +SGGLHGVG SVVNALS+ L+V V ++ +Y ++ G +
Sbjct: 93 VFTILHAGGKF--DSNTYKISGGLHGVGASVVNALSKYLKVEVRKNNKKYVMEFHNGGQI 150
Query: 62 TTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL-- 119
T + V S GT + F PD+++F F +TI RI++L FLN L I+L
Sbjct: 151 LT---PIKEVGSTSETGTTVTFLPDEKIFKETTIFSFSTIQNRIKQLVFLNKGLEISLVD 207
Query: 120 -RKEDSDPEKNQYNEYFFAGGLEEYVQWLN-TDKKPLHDVVGFRKDVDGITIDLALQWCS 177
R+ED EK Y F G+++YV LN T PL+DV D I ++ LQ+ +
Sbjct: 208 LREEDE--EKTVL--YQFNNGIKDYVLELNKTIGTPLNDVFYVEGIEDNIVVEFGLQY-N 262
Query: 178 DAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK--SKTVKDKDISLSGEHVRE 235
D YS+ + + N+I T +GGTH EG + ++ R +N+ K +K K + + + ++E
Sbjct: 263 DNYSENIFSFCNNINTHEGGTHEEGARLAIVREINNYFKNQINKNNKGNEDKFTWDDIKE 322
Query: 236 GLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLS 295
G+T IIS+R P P++EGQT +L N EV+K+V V + L+ YL +P+ I+ K
Sbjct: 323 GMTIIISIRHPEPQYEGQTNQKLLNSEVKKIVSNIVGKGLSSYLLENPEDAKKIIEKISL 382
Query: 296 ALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
+LKA + A+RA+++ R+K V+ S SLPGKL+DC + + +E++IVEGDSAGGSAK GR+
Sbjct: 383 SLKATIVAQRAKEITRRKIVMDSFSLPGKLSDCETKDAKIAELYIVEGDSAGGSAKSGRN 442
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
R+FQAILPLRGKILNVE+ + +++N EI ++I ALG G+K ++F + LRY K+II+T
Sbjct: 443 RKFQAILPLRGKILNVEKAKQIKIFENNEINSIITALGAGIK-DNFNDKKLRYQKVIIMT 501
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY-DDAELKKVK 474
DADVDGAHIR LLLTFFYRY K L + G IY+ PPLYKVE Q++Y Y D+ +
Sbjct: 502 DADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQPPLYKVENSNQIRYVYSDNELELYKE 561
Query: 475 SSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARV 534
N Y+IQR+KGLGEM P QLWETT++PE+R+L ++ + +A EAN++ + LMG V
Sbjct: 562 ELLKQNKNYTIQRYKGLGEMNPEQLWETTMDPERRLLLKVSVNNAFEANLICNELMGENV 621
Query: 535 DTRKELI-QNAANLVNLD 551
+ RK+ I +NA + NLD
Sbjct: 622 EPRKKFIRENAKYVKNLD 639
>sp|O08399|GYRB_TREPA DNA gyrase subunit B OS=Treponema pallidum (strain Nichols) GN=gyrB
PE=1 SV=1
Length = 637
Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust.
Identities = 267/562 (47%), Positives = 369/562 (65%), Gaps = 28/562 (4%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+++T LHAGGKF S Y VSGGLHGVG+SVVNALS +EVTV+RDG EY+QK++ G P
Sbjct: 92 VVLTKLHAGGKFDKKS--YKVSGGLHGVGVSVVNALSLWVEVTVYRDGAEYYQKFNVGMP 149
Query: 61 VTTLTCHVLPVDSK---DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTI 117
+ PV+ + +++GT IR+ D +F + +D + + R+RELAFLN + I
Sbjct: 150 LA-------PVEKRGVSEKRGTIIRWQADPSIFKETVAYDFDVLLTRLRELAFLNSTVVI 202
Query: 118 ALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-----KPLHDVVGFRKDVDGITIDLA 172
LR E K E+ F GG+ +V +LN K +PL+ + G + DV +++A
Sbjct: 203 QLRDERLATAKQV--EFAFEGGIRHFVSYLNRGKSVVPERPLY-IEGSKSDV---LVEVA 256
Query: 173 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK---DISLS 229
LQ+ D Y++ + + N I T +GGTH+EG K++LTR N KKS + K + L
Sbjct: 257 LQY-HDGYTENVQSFVNDINTREGGTHLEGFKSALTRVANDFLKKSPKLAKKIEREEKLV 315
Query: 230 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 289
GE VR GLT ++SV++P P+FEGQTKT+LGN EVR +VD V E LT Y E +P VL I
Sbjct: 316 GEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSEVRGIVDSLVGERLTLYFEQNPGVLTKI 375
Query: 290 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 349
L KS++ +A LAA+RA++ R+KS + S LPGKLADCS P + E++IVEGDSAGGS
Sbjct: 376 LEKSIAEAQARLAARRAKEAARRKSGMDSFGLPGKLADCSLKDPAKCEVYIVEGDSAGGS 435
Query: 350 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 409
AK+GRD + QAILPL GK+LNVE+ + NE++Q +I LG GV G+DF +RYH
Sbjct: 436 AKKGRDSKTQAILPLWGKMLNVEKTRLDKVLHNEKLQPIIATLGTGV-GKDFDLTRIRYH 494
Query: 410 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 469
K+II+ DADVDG+HIRTLLLTFF+RY + + G +Y+ +PPLY++ K+ Y Y D E
Sbjct: 495 KVIIMADADVDGSHIRTLLLTFFFRYLPQIIEAGYVYLAMPPLYRIAWSKKELYVYSDTE 554
Query: 470 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 529
+ S + ++QR+KGLGEM QLWETT+NP +R + Q+V+ DA EA+ VFS+L
Sbjct: 555 RDEALESIGKKSGVAVQRYKGLGEMDGTQLWETTMNPVRRKMMQVVLSDAVEADRVFSTL 614
Query: 530 MGARVDTRKELIQNAANLVNLD 551
MG V+ R++ I+ A LD
Sbjct: 615 MGEDVEPRRKFIEENAIYARLD 636
>sp|Q59192|PARE_BACSU DNA topoisomerase 4 subunit B OS=Bacillus subtilis (strain 168)
GN=parE PE=3 SV=2
Length = 655
Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust.
Identities = 254/551 (46%), Positives = 351/551 (63%), Gaps = 24/551 (4%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-K 59
+I+TVLHAGGKFG GY SGGLHGVG SVVNALSE L VT+ RDG Y Q++ G K
Sbjct: 95 VILTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLTVTIERDGFVYQQRFENGGK 152
Query: 60 PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 119
PVT+L + + GT F PD +F+T ++ T++ R+RE AFL L I L
Sbjct: 153 PVTSLE----KIGKTKKTGTLTHFKPDPTMFSTTT-YNFETLSERLRESAFLLKGLKIEL 207
Query: 120 RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDA 179
E +D Q +++ G+E +V +LN +K L +VV F + I +D A Q+ +D
Sbjct: 208 IDERND----QREVFYYENGIEAFVAYLNEEKDVLSEVVSFEGEHHSIEVDFAFQF-NDG 262
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
YS+ +L + N++RT DGGTH G K ++TR N +K +K+KD +L G +REGL+
Sbjct: 263 YSENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEGTDIREGLSA 322
Query: 240 IISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 297
IISVR+P +FEGQTK +LG E R VD V E L +LE + D ++ K++ A
Sbjct: 323 IISVRIPEELLQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRDTATLLVKKAIKAS 382
Query: 298 KAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
+A AA++AR+ R +K ++L GKL S P ++E+++VEGDSAGGSAKQGRD
Sbjct: 383 QAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGSAKQGRD 442
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
RRFQA+LPLRGK++N E+ A ++KNEEI +I A+G GV G DF + + Y KIII+T
Sbjct: 443 RRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGV-GADFSIDDINYDKIIIMT 501
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ----VQYCYDDAELK 471
DAD DGAHI+ LLLTFFYRY K L + G +++ +PPLYKV +G ++Y + D E+
Sbjct: 502 DADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEIIEYAWSDEEMG 561
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 531
V Y+IQR+KGLGEM QLWETT+NPE R L ++ I+DAA ++LMG
Sbjct: 562 DVLKKVGKG--YTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVTTLMG 619
Query: 532 ARVDTRKELIQ 542
+V+ R++ I+
Sbjct: 620 DKVEPRRKWIE 630
>sp|Q59961|PARE_STRPN DNA topoisomerase 4 subunit B OS=Streptococcus pneumoniae serotype
4 (strain ATCC BAA-334 / TIGR4) GN=parE PE=1 SV=3
Length = 647
Score = 464 bits (1194), Expect = e-130, Method: Compositional matrix adjust.
Identities = 250/552 (45%), Positives = 360/552 (65%), Gaps = 22/552 (3%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-K 59
+I T+LHAGGKFG GY SGGLHGVG SVVNALS LEV + RDG Y Q++ G K
Sbjct: 97 VIFTILHAGGKFG--QGGYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGK 154
Query: 60 PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 119
PVTTL + K + GT++ F PD +F+T F +NTI+ R+ E AFL +T++L
Sbjct: 155 PVTTLKK--IGTAPKSKTGTKVTFMPDATIFSTT-DFKYNTISERLNESAFLLKNVTLSL 211
Query: 120 RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDA 179
+D N+ E+ + G++++V +LN DK+ L V+ F + +G +++ALQ+ +D
Sbjct: 212 ----TDKRTNEAIEFHYENGVQDFVSYLNEDKEILTPVLYFEGEDNGFQVEVALQY-NDG 266
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
+SD +L + N++RT DGGTH G+K+++T+ +N +K+ +K+KD +L G REGL
Sbjct: 267 FSDNILSFVNNVRTKDGGTHETGLKSAITKVMNDYARKTGLLKEKDKNLEGSDYREGLAA 326
Query: 240 IISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 297
++S+ VP +FEGQTK +LG+P R VVD V + LT +L + ++ +++ K++ A
Sbjct: 327 VLSILVPEEHLQFEGQTKDKLGSPLARPVVDGIVADKLTFFLMENGELASNLIRKAIKAR 386
Query: 298 KAALAAKRARDLVRQKSVLRSSSL--PGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
A AA++ARD R + GKL S P ++E+++VEGDSAGGSAKQGRD
Sbjct: 387 DAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRD 446
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
R+FQAILPLRGK++N + A + KNEEI +I +G GV G DF E Y KIII+T
Sbjct: 447 RKFQAILPLRGKVVNTAKAKMADILKNEEINTMIYTIGAGV-GADFSIEDANYDKIIIMT 505
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK----QVQYCYDDAELK 471
DAD DGAHI+TLLLTFFYRY + L + G +Y+ +PPLYK+ +GK +V Y + D EL+
Sbjct: 506 DADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELE 565
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 531
+++ F A ++QR+KGLGEM QLWETT+NPE R L ++ IED A A + LMG
Sbjct: 566 ELRKQFGKGA--TLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMG 623
Query: 532 ARVDTRKELIQN 543
+V+ R++ I++
Sbjct: 624 DKVEPRRKWIED 635
>sp|Q9A0L0|GYRB_STRP1 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M1 GN=gyrB
PE=3 SV=1
Length = 650
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/534 (45%), Positives = 359/534 (67%), Gaps = 15/534 (2%)
Query: 25 LHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFW 84
LHGVG SVVNALS L+V V+++G ++Q++ RG V L + + D GT + F
Sbjct: 124 LHGVGSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEV----IGTTDVTGTTVHFT 179
Query: 85 PDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYV 144
PD ++FT QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV
Sbjct: 180 PDPEIFTETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FLYEGGIGSYV 237
Query: 145 QWLNTDKKPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGV 203
++LN K + + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G
Sbjct: 238 EFLNDKKDVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGF 296
Query: 204 KASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEV 263
+A+LTR +N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV
Sbjct: 297 RAALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEV 356
Query: 264 RKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPG 323
K+ ++ E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPG
Sbjct: 357 VKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPG 416
Query: 324 KLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNE 383
KLADCSS ++E+FIVEGDSAGGSAK GR+R FQAILP+RGKILNVE+ + NE
Sbjct: 417 KLADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANE 476
Query: 384 EIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEG 443
EI++L A+G G G DF RY K++I+TDADVDGAHIRTLLLT YR+ + + + G
Sbjct: 477 EIRSLFTAMGTGF-GADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAG 535
Query: 444 CIYVGVPPLYKVERGKQV-QYCY----DDAELKKVKSSFP-SNALYSIQRFKGLGEMMPV 497
+Y+ PP+Y V+ G ++ +Y + +LK + + ++QR+KGLGEM
Sbjct: 536 YVYIAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDH 595
Query: 498 QLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 551
QLWETT++PE R++ ++ ++DAAEA+ VF LMG RV+ R++ I+ A LD
Sbjct: 596 QLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|Q8P1M4|GYRB_STRP8 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=gyrB PE=3 SV=1
Length = 650
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/534 (45%), Positives = 359/534 (67%), Gaps = 15/534 (2%)
Query: 25 LHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFW 84
LHGVG SVVNALS L+V V+++G ++Q++ RG V L + + D GT + F
Sbjct: 124 LHGVGSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEI----IGTTDVTGTTVHFT 179
Query: 85 PDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYV 144
PD ++FT QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV
Sbjct: 180 PDPEIFTETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FHYEGGIGSYV 237
Query: 145 QWLNTDKKPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGV 203
++LN K + + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G
Sbjct: 238 EFLNDKKDVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGF 296
Query: 204 KASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEV 263
+A+LTR +N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV
Sbjct: 297 RAALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEV 356
Query: 264 RKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPG 323
K+ ++ E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPG
Sbjct: 357 VKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPG 416
Query: 324 KLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNE 383
KLADCSS ++E+FIVEGDSAGGSAK GR+R FQAILP+RGKILNVE+ + NE
Sbjct: 417 KLADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANE 476
Query: 384 EIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEG 443
EI++L A+G G G DF RY K++I+TDADVDGAHIRTLLLT YR+ + + + G
Sbjct: 477 EIRSLFTAMGTGF-GADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAG 535
Query: 444 CIYVGVPPLYKVERGKQV-QYCY----DDAELKKVKSSFP-SNALYSIQRFKGLGEMMPV 497
+Y+ PP+Y V+ G ++ +Y + +LK + + ++QR+KGLGEM
Sbjct: 536 YVYIAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDH 595
Query: 498 QLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 551
QLWETT++PE R++ ++ ++DAAEA+ VF LMG RV+ R++ I+ A LD
Sbjct: 596 QLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|Q5XD05|GYRB_STRP6 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=gyrB PE=3 SV=1
Length = 650
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/534 (45%), Positives = 359/534 (67%), Gaps = 15/534 (2%)
Query: 25 LHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFW 84
LHGVG SVVNALS L+V V+++G ++Q++ RG V L + + D GT + F
Sbjct: 124 LHGVGSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEI----IGTTDVTGTTVHFT 179
Query: 85 PDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYV 144
PD ++FT QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV
Sbjct: 180 PDPEIFTETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FHYEGGIGSYV 237
Query: 145 QWLNTDKKPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGV 203
++LN K + + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G
Sbjct: 238 EFLNDKKDVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGF 296
Query: 204 KASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEV 263
+A+LTR +N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV
Sbjct: 297 RAALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEV 356
Query: 264 RKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPG 323
K+ ++ E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPG
Sbjct: 357 VKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPG 416
Query: 324 KLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNE 383
KLADCSS ++E+FIVEGDSAGGSAK GR+R FQAILP+RGKILNVE+ + NE
Sbjct: 417 KLADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANE 476
Query: 384 EIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEG 443
EI++L A+G G G DF RY K++I+TDADVDGAHIRTLLLT YR+ + + + G
Sbjct: 477 EIRSLFTAMGTGF-GADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAG 535
Query: 444 CIYVGVPPLYKVERGKQV-QYCY----DDAELKKVKSSFP-SNALYSIQRFKGLGEMMPV 497
+Y+ PP+Y V+ G ++ +Y + +LK + + ++QR+KGLGEM
Sbjct: 536 YVYIAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDH 595
Query: 498 QLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 551
QLWETT++PE R++ ++ ++DAAEA+ VF LMG RV+ R++ I+ A LD
Sbjct: 596 QLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|Q9L7L3|GYRB_MYCPA DNA gyrase subunit B OS=Mycobacterium paratuberculosis (strain ATCC
BAA-968 / K-10) GN=gyrB PE=3 SV=1
Length = 677
Score = 459 bits (1180), Expect = e-128, Method: Compositional matrix adjust.
Identities = 261/587 (44%), Positives = 371/587 (63%), Gaps = 44/587 (7%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+++T LHAGGKFGG +SGY+VSGGLHGVG+SVVNALS LEV + RDG E+ Q Y P
Sbjct: 98 VVMTQLHAGGKFGGENSGYNVSGGLHGVGVSVVNALSTRLEVNIARDGYEWSQYYDHAVP 157
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
T ++ R GT IRFW D +F T ++D T+A R++E+AFLN LTI L
Sbjct: 158 GTLKQG-----EATKRTGTTIRFWADPDIFETT-EYDFETVARRLQEMAFLNKGLTINLT 211
Query: 121 ----------------------------KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 152
E + P K ++ + + GGL ++V+ +N K
Sbjct: 212 DERVTNEEVVDEVVSDTADAPKSAQEKAAESAAPHKVKHRTFHYPGGLVDFVKHINRTKN 271
Query: 153 PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 211
P+H ++ F G +++A+QW + YS+++ +AN+I T +GGTH EG +++LT +
Sbjct: 272 PIHQSIIDFGGKGPGHEVEIAMQW-NGGYSESVHTFANTINTHEGGTHEEGFRSALTSVV 330
Query: 212 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 271
N K K +KDKD +L+G+ +REGL +ISV+V P+FEGQTKT+LGN EV+ V +
Sbjct: 331 NKYAKDKKLLKDKDPNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVC 390
Query: 272 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 331
E LT + E +P I++K++S+ +A +AA++AR+LVR+KS LPGKLADC ST
Sbjct: 391 NEQLTHWFEANPADAKVIVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRST 450
Query: 332 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 391
P +SE+++VEGDSAGGSAK GRD FQAILPLRGKI+NVE+ + KN E+Q +I A
Sbjct: 451 DPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITA 510
Query: 392 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 451
LG G+ E F LRYHKI+++ DADVDG HI TLLLT +R+ + L + G +++ PP
Sbjct: 511 LGTGIHDE-FDITKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIEHGHVFLAQPP 569
Query: 452 LYKVE-RGKQVQYCYDDAEL-----KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLN 505
LYK++ + ++ Y D E +K+ N IQR+KGLGEM +LWETT++
Sbjct: 570 LYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKDDGIQRYKGLGEMDAKELWETTMD 629
Query: 506 PEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 551
P R+L+Q+ ++DAA A+ +FS LMG VD R+ I +NA ++ LD
Sbjct: 630 PTVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLD 676
>sp|P66939|PARE_STAAN DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain
N315) GN=parE PE=1 SV=1
Length = 663
Score = 457 bits (1177), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/551 (44%), Positives = 354/551 (64%), Gaps = 21/551 (3%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-K 59
+I TVLHAGGKFG GY SGGLHGVG SVVNALSE LEV + RDG YHQ + G
Sbjct: 93 VIFTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGSIYHQSFKNGGS 150
Query: 60 PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 119
P + L + T++ F PD +F + F+ + ++ R++E AFL L I L
Sbjct: 151 PSSGLVKKGKTKKTG----TKVTFKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITL 206
Query: 120 RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDA 179
S E+ ++ Y + G++E+V ++N K+ LHDV F + +GI +D+A Q+ +D
Sbjct: 207 NDLRSGKERQEH--YHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVAFQY-NDQ 263
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
YS+++L + N++RT DGGTH G K ++TR N ++ +K KD +L G +REGLT
Sbjct: 264 YSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTA 323
Query: 240 IISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 297
++SVR+P +FEGQTK++LG E R VD V + L YLE + S++ K++ A
Sbjct: 324 VVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQ 383
Query: 298 KAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
+A AA++AR+ R +K+ + + L GKL S E++E+++VEGDSAGGSAK GRD
Sbjct: 384 QAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRD 443
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
R+FQAILPLRGK++N E+ ++KNEEI +I +G GV G DFK E Y+++II+T
Sbjct: 444 RKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRVIIMT 502
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELK 471
DAD DGAHI+ LLLTFF++Y K L G +++ +PPLYK+E+G K+V+Y + D EL
Sbjct: 503 DADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELN 562
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 531
K++ +++QR+KGLGEM P QLWETT+NPE R L ++ +ED ++ ++LMG
Sbjct: 563 KLQKELGKG--FTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMG 620
Query: 532 ARVDTRKELIQ 542
+V R+E I+
Sbjct: 621 DKVQPRREWIE 631
>sp|P66938|PARE_STAAM DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=parE PE=3 SV=1
Length = 663
Score = 457 bits (1177), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/551 (44%), Positives = 354/551 (64%), Gaps = 21/551 (3%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-K 59
+I TVLHAGGKFG GY SGGLHGVG SVVNALSE LEV + RDG YHQ + G
Sbjct: 93 VIFTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGSIYHQSFKNGGS 150
Query: 60 PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 119
P + L + T++ F PD +F + F+ + ++ R++E AFL L I L
Sbjct: 151 PSSGLVKKGKTKKTG----TKVTFKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITL 206
Query: 120 RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDA 179
S E+ ++ Y + G++E+V ++N K+ LHDV F + +GI +D+A Q+ +D
Sbjct: 207 NDLRSGKERQEH--YHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVAFQY-NDQ 263
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
YS+++L + N++RT DGGTH G K ++TR N ++ +K KD +L G +REGLT
Sbjct: 264 YSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTA 323
Query: 240 IISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 297
++SVR+P +FEGQTK++LG E R VD V + L YLE + S++ K++ A
Sbjct: 324 VVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQ 383
Query: 298 KAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
+A AA++AR+ R +K+ + + L GKL S E++E+++VEGDSAGGSAK GRD
Sbjct: 384 QAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRD 443
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
R+FQAILPLRGK++N E+ ++KNEEI +I +G GV G DFK E Y+++II+T
Sbjct: 444 RKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRVIIMT 502
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELK 471
DAD DGAHI+ LLLTFF++Y K L G +++ +PPLYK+E+G K+V+Y + D EL
Sbjct: 503 DADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELN 562
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 531
K++ +++QR+KGLGEM P QLWETT+NPE R L ++ +ED ++ ++LMG
Sbjct: 563 KLQKELGKG--FTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMG 620
Query: 532 ARVDTRKELIQ 542
+V R+E I+
Sbjct: 621 DKVQPRREWIE 631
>sp|P0A0K9|PARE_STAAW DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain MW2)
GN=parE PE=3 SV=1
Length = 663
Score = 457 bits (1176), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/551 (44%), Positives = 354/551 (64%), Gaps = 21/551 (3%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-K 59
+I TVLHAGGKFG GY SGGLHGVG SVVNALSE LEV + RDG YHQ + G
Sbjct: 93 VIFTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGS 150
Query: 60 PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 119
P + L + T++ F PD +F + F+ + ++ R++E AFL L I L
Sbjct: 151 PSSGLVKKGKTKKTG----TKVTFKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITL 206
Query: 120 RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDA 179
S E+ ++ Y + G++E+V ++N K+ LHDV F + +GI +D+A Q+ +D
Sbjct: 207 NDLRSGKERQEH--YHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVAFQY-NDQ 263
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
YS+++L + N++RT DGGTH G K ++TR N ++ +K KD +L G +REGLT
Sbjct: 264 YSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTA 323
Query: 240 IISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 297
++SVR+P +FEGQTK++LG E R VD V + L YLE + S++ K++ A
Sbjct: 324 VVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQ 383
Query: 298 KAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
+A AA++AR+ R +K+ + + L GKL S E++E+++VEGDSAGGSAK GRD
Sbjct: 384 QAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRD 443
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
R+FQAILPLRGK++N E+ ++KNEEI +I +G GV G DFK E Y+++II+T
Sbjct: 444 RKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRVIIMT 502
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELK 471
DAD DGAHI+ LLLTFF++Y K L G +++ +PPLYK+E+G K+V+Y + D EL
Sbjct: 503 DADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELN 562
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 531
K++ +++QR+KGLGEM P QLWETT+NPE R L ++ +ED ++ ++LMG
Sbjct: 563 KLQKELGKG--FTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMG 620
Query: 532 ARVDTRKELIQ 542
+V R+E I+
Sbjct: 621 DKVQPRREWIE 631
>sp|P0C1S7|PARE_STAAU DNA topoisomerase 4 subunit B OS=Staphylococcus aureus GN=parE PE=3
SV=1
Length = 663
Score = 457 bits (1176), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/551 (44%), Positives = 354/551 (64%), Gaps = 21/551 (3%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-K 59
+I TVLHAGGKFG GY SGGLHGVG SVVNALSE LEV + RDG YHQ + G
Sbjct: 93 VIFTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGS 150
Query: 60 PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 119
P + L + T++ F PD +F + F+ + ++ R++E AFL L I L
Sbjct: 151 PSSGLVKKGKTKKTG----TKVTFKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITL 206
Query: 120 RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDA 179
S E+ ++ Y + G++E+V ++N K+ LHDV F + +GI +D+A Q+ +D
Sbjct: 207 NDLRSGKERQEH--YHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVAFQY-NDQ 263
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
YS+++L + N++RT DGGTH G K ++TR N ++ +K KD +L G +REGLT
Sbjct: 264 YSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTA 323
Query: 240 IISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 297
++SVR+P +FEGQTK++LG E R VD V + L YLE + S++ K++ A
Sbjct: 324 VVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQ 383
Query: 298 KAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
+A AA++AR+ R +K+ + + L GKL S E++E+++VEGDSAGGSAK GRD
Sbjct: 384 QAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRD 443
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
R+FQAILPLRGK++N E+ ++KNEEI +I +G GV G DFK E Y+++II+T
Sbjct: 444 RKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRVIIMT 502
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELK 471
DAD DGAHI+ LLLTFF++Y K L G +++ +PPLYK+E+G K+V+Y + D EL
Sbjct: 503 DADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELN 562
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 531
K++ +++QR+KGLGEM P QLWETT+NPE R L ++ +ED ++ ++LMG
Sbjct: 563 KLQKELGKG--FTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMG 620
Query: 532 ARVDTRKELIQ 542
+V R+E I+
Sbjct: 621 DKVQPRREWIE 631
>sp|Q5HG65|PARE_STAAC DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain COL)
GN=parE PE=3 SV=2
Length = 663
Score = 457 bits (1176), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/551 (44%), Positives = 354/551 (64%), Gaps = 21/551 (3%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-K 59
+I TVLHAGGKFG GY SGGLHGVG SVVNALSE LEV + RDG YHQ + G
Sbjct: 93 VIFTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGS 150
Query: 60 PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 119
P + L + T++ F PD +F + F+ + ++ R++E AFL L I L
Sbjct: 151 PSSGLVKKGKTKKTG----TKVTFKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITL 206
Query: 120 RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDA 179
S E+ ++ Y + G++E+V ++N K+ LHDV F + +GI +D+A Q+ +D
Sbjct: 207 NDLRSGKERQEH--YHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVAFQY-NDQ 263
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
YS+++L + N++RT DGGTH G K ++TR N ++ +K KD +L G +REGLT
Sbjct: 264 YSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTA 323
Query: 240 IISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 297
++SVR+P +FEGQTK++LG E R VD V + L YLE + S++ K++ A
Sbjct: 324 VVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQ 383
Query: 298 KAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
+A AA++AR+ R +K+ + + L GKL S E++E+++VEGDSAGGSAK GRD
Sbjct: 384 QAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRD 443
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
R+FQAILPLRGK++N E+ ++KNEEI +I +G GV G DFK E Y+++II+T
Sbjct: 444 RKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRVIIMT 502
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELK 471
DAD DGAHI+ LLLTFF++Y K L G +++ +PPLYK+E+G K+V+Y + D EL
Sbjct: 503 DADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELN 562
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 531
K++ +++QR+KGLGEM P QLWETT+NPE R L ++ +ED ++ ++LMG
Sbjct: 563 KLQKELGKG--FTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMG 620
Query: 532 ARVDTRKELIQ 542
+V R+E I+
Sbjct: 621 DKVQPRREWIE 631
>sp|Q2FYS5|PARE_STAA8 DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain NCTC
8325) GN=parE PE=3 SV=1
Length = 663
Score = 457 bits (1176), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/551 (44%), Positives = 354/551 (64%), Gaps = 21/551 (3%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-K 59
+I TVLHAGGKFG GY SGGLHGVG SVVNALSE LEV + RDG YHQ + G
Sbjct: 93 VIFTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGS 150
Query: 60 PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 119
P + L + T++ F PD +F + F+ + ++ R++E AFL L I L
Sbjct: 151 PSSGLVKKGKTKKTG----TKVTFKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITL 206
Query: 120 RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDA 179
S E+ ++ Y + G++E+V ++N K+ LHDV F + +GI +D+A Q+ +D
Sbjct: 207 NDLRSGKERQEH--YHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVAFQY-NDQ 263
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
YS+++L + N++RT DGGTH G K ++TR N ++ +K KD +L G +REGLT
Sbjct: 264 YSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTA 323
Query: 240 IISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 297
++SVR+P +FEGQTK++LG E R VD V + L YLE + S++ K++ A
Sbjct: 324 VVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQ 383
Query: 298 KAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
+A AA++AR+ R +K+ + + L GKL S E++E+++VEGDSAGGSAK GRD
Sbjct: 384 QAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRD 443
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
R+FQAILPLRGK++N E+ ++KNEEI +I +G GV G DFK E Y+++II+T
Sbjct: 444 RKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRVIIMT 502
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELK 471
DAD DGAHI+ LLLTFF++Y K L G +++ +PPLYK+E+G K+V+Y + D EL
Sbjct: 503 DADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELN 562
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 531
K++ +++QR+KGLGEM P QLWETT+NPE R L ++ +ED ++ ++LMG
Sbjct: 563 KLQKELGKG--FTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMG 620
Query: 532 ARVDTRKELIQ 542
+V R+E I+
Sbjct: 621 DKVQPRREWIE 631
>sp|P22447|GYRB_MYCPN DNA gyrase subunit B OS=Mycoplasma pneumoniae (strain ATCC 29342 /
M129) GN=gyrB PE=1 SV=1
Length = 650
Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust.
Identities = 250/562 (44%), Positives = 356/562 (63%), Gaps = 22/562 (3%)
Query: 2 IVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPV 61
+ TVLHAGGKF S Y VSGGLHGVG SVVNALS S +V V R+ +Y + G V
Sbjct: 98 VFTVLHAGGKFDNDS--YKVSGGLHGVGASVVNALSSSFKVWVAREHQQYFLAFHNGGEV 155
Query: 62 TTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRK 121
+ D + GT++ F PD V + + IA R+++LAFLN + I
Sbjct: 156 IGDLVNEGKCDKE--HGTKVEFVPDFTVMEKS-DYKQTVIASRLQQLAFLNKGIQIDFV- 211
Query: 122 EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDG-----------ITID 170
D + Q + + GGL +Y+ LN +K+PL + + F + D I ++
Sbjct: 212 -DERRQNPQSFSWKYDGGLVQYIHHLNNEKEPLFEDIIFGEKTDTVKSVSRDESYTIKVE 270
Query: 171 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 230
+A Q+ + Y+ ++ + N+I T +GGTH+EG + +L + +N ++K +K+ D ++
Sbjct: 271 VAFQY-NKTYNQSIFSFCNNINTTEGGTHVEGFRNALVKIINRFAVENKFLKETDEKITR 329
Query: 231 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 290
+ + EGLT IIS++ PNP++EGQTK +LGN EVR +V+ V E ++ +P ++I+
Sbjct: 330 DDICEGLTAIISIKHPNPQYEGQTKKKLGNTEVRPLVNSIVSEIFERFMLENPQEANAII 389
Query: 291 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 350
K+L A +A ++ AR+L R+KS S SLPGKLADC++ P SE++IVEGDSAGG+A
Sbjct: 390 RKTLLAQEARRRSQEARELTRRKSPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTA 449
Query: 351 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 410
K GRDR FQAILPLRGKILNVE+ ++ N EI L+ A+G G+K DF+ E LRY+K
Sbjct: 450 KTGRDRYFQAILPLRGKILNVEKSHFEQIFNNVEISALVMAVGCGIK-PDFELEKLRYNK 508
Query: 411 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 470
III+TDADVDGAHIRTLLLTFF+R+ L ++G IY+ PPLYKV + Y D +L
Sbjct: 509 IIIMTDADVDGAHIRTLLLTFFFRFMYPLVEQGNIYIAQPPLYKVSYSNKDLYMQTDVQL 568
Query: 471 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 530
++ K P N Y++QR+KGLGEM +QLWETT++P+ R L ++ +EDA+ A+ FS LM
Sbjct: 569 EEWKQQHP-NLKYNLQRYKGLGEMDAIQLWETTMDPKVRTLLKVTVEDASIADKAFSLLM 627
Query: 531 GARVDTRKELI-QNAANLVNLD 551
G V R+E I QNA N+ N+D
Sbjct: 628 GDEVPPRREFIEQNARNVKNID 649
>sp|Q9ZFK1|GYRB_BORHE DNA gyrase subunit B OS=Borrelia hermsii GN=gyrB PE=3 SV=1
Length = 634
Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust.
Identities = 253/555 (45%), Positives = 366/555 (65%), Gaps = 15/555 (2%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+++T LH+GGKF + Y VSGGLHGVG+SVVNALS L V V RDG + Q YSRG P
Sbjct: 90 LVLTKLHSGGKFNKGT--YKVSGGLHGVGISVVNALSSFLAVIVSRDGKLFKQTYSRGIP 147
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
T V + +GT++ F D ++F T +++D T++ R+RELAFLN K+ I++
Sbjct: 148 ----TSEVDIIGVSSARGTKVTFLADSEIFET-LEYDFETLSKRLRELAFLNDKIRISI- 201
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITIDLALQWCSDA 179
ED K ++ E++F GG++ +V ++ + K + + F D + + + L+W ++
Sbjct: 202 -EDRRSGKEKFLEFYFEGGIKAFVDYITNNSKNIQNEPYFIEGSCDDVIVSVGLKW-TEG 259
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
YSD +L + N+I T +GGTH+ G K+ + ++ + SK K SL+ + +EGLT
Sbjct: 260 YSDHILSFVNNINTREGGTHVAGFKSGFLKAMSEAFRDSKISKKDVPSLTLDDFKEGLTA 319
Query: 240 IISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKA 299
+IS+++P P+FEGQTK +LGN V+K+V+ V + L + ++ + +D IL+K++ A +A
Sbjct: 320 VISIKIPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLKVIDDNLLEVDIILNKAIRAARA 379
Query: 300 ALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQ 359
AA++AR+ R+KS S +LPGKLADC+S P E EI+IVEGDSAGGSAK GRDR Q
Sbjct: 380 REAARKARESERKKSAFESLALPGKLADCASKNPAEREIYIVEGDSAGGSAKMGRDRFSQ 439
Query: 360 AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADV 419
AILPL GK+LNVE+ E + N+++ +I +LG GV G+ F E LRYHKIII+ DADV
Sbjct: 440 AILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGV-GKTFYIEKLRYHKIIIMADADV 498
Query: 420 DGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPS 479
DG+HIRTLLLTFF+RY + L + G +Y+ +PPLYK++ + Y YDD E + S +
Sbjct: 499 DGSHIRTLLLTFFFRYMRELIENGHVYIAMPPLYKLKYENREHYFYDDLEKEAFLGSIET 558
Query: 480 NAL--YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTR 537
S+QR+KGLGEM P QLWETT+NP R +K + I DA +A +F +LMG V+ R
Sbjct: 559 GKRDKVSLQRYKGLGEMNPTQLWETTMNPATRKMKLIKINDAIQAEKIFVTLMGDDVEPR 618
Query: 538 KELI-QNAANLVNLD 551
+E I QNA ++VNLD
Sbjct: 619 REFIEQNALDVVNLD 633
>sp|Q6GH51|PARE_STAAR DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain
MRSA252) GN=parE PE=3 SV=2
Length = 663
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/551 (44%), Positives = 354/551 (64%), Gaps = 21/551 (3%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-K 59
+I TVLHAGGKFG GY SGGLHGVG SVVNALSE LEV + RDG YHQ + G
Sbjct: 93 VIFTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGS 150
Query: 60 PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 119
P + L + T++ F PD +F + F+ + ++ R++E AFL L I L
Sbjct: 151 PSSGLVKKGKTKKTG----TKVTFKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITL 206
Query: 120 RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDA 179
S E+ ++ Y + G++E+V ++N K+ LHDV F + +GI +D+A Q+ +D
Sbjct: 207 NDLRSGKERQEH--YHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVAFQY-NDQ 263
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
YS+++L + N++RT DGGTH G K ++TR N ++ +K KD +L G +REGLT
Sbjct: 264 YSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTA 323
Query: 240 IISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 297
++SVR+P +FEGQTK++LG E R VD V + L YLE + S++ K++ A
Sbjct: 324 VVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQ 383
Query: 298 KAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
+A AA++AR+ R +K+ + + L GKL S +++E+++VEGDSAGGSAK GRD
Sbjct: 384 QAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRD 443
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
R+FQAILPLRGK++N E+ ++KNEEI +I +G GV G DFK E Y+++II+T
Sbjct: 444 RKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRVIIMT 502
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELK 471
DAD DGAHI+ LLLTFF++Y K L G +++ +PPLYK+E+G K+V+Y + D EL
Sbjct: 503 DADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELN 562
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 531
K++ +++QR+KGLGEM P QLWETT+NPE R L ++ +ED ++ ++LMG
Sbjct: 563 KLQKELGKG--FTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMG 620
Query: 532 ARVDTRKELIQ 542
+V R+E I+
Sbjct: 621 DKVQPRREWIE 631
>sp|P47720|GYRB_MYCGA DNA gyrase subunit B OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=gyrB PE=3 SV=2
Length = 648
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 254/563 (45%), Positives = 364/563 (64%), Gaps = 25/563 (4%)
Query: 2 IVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRD-GMEYHQKYSRGKP 60
++T+LHAGGKF S YS+SGGLHGVG SVVNALS S +V V RD + Y + G P
Sbjct: 97 VLTILHAGGKF--DSDTYSMSGGLHGVGASVVNALSSSFKVWVNRDYKIHYIEFKDGGVP 154
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
+ L ++ DSK +QGTRI+F PD + ++D IA RI +LAFLN +
Sbjct: 155 LKPL--EIIGTDSK-KQGTRIQFVPDFSIME-QFEYDETIIADRIEQLAFLNKGIKFIFN 210
Query: 121 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI----------- 169
E +D + Q E+ + GG+++YV+ LN K+P+ + + + +T+
Sbjct: 211 DERTDKKTKQ--EWLYEGGIKQYVENLNASKEPIIPQIIYGEKKTKVTLPKRNLEVTMLL 268
Query: 170 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 229
++A Q+ ++ Y ++ + N+I T GGTH EG K +L + +N + K +K+ D +S
Sbjct: 269 EVAFQY-TNGYYNSTYSFCNNIHTNQGGTHEEGFKNALYKIINRYALEKKFIKETDGKIS 327
Query: 230 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 289
E + EGLT IIS++ P+++GQTK RLGN EVR+ + V E L + +P+ I
Sbjct: 328 KEDLSEGLTAIISIKHSEPQYQGQTKDRLGNTEVREFTNSVVSELLERFFLENPEEAAKI 387
Query: 290 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 349
+K++SA+ + ++ A + R KS S+SLPGKLADC++ E SE++IVEGDSAGGS
Sbjct: 388 TAKAVSAMFSRKRSEAALESAR-KSPFESASLPGKLADCTTKDMEISELYIVEGDSAGGS 446
Query: 350 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 409
AK GRDR +QAILPLRGK+LNVE+ + ++KNEEI+ LI A+G GV E F + +RY+
Sbjct: 447 AKSGRDRFYQAILPLRGKVLNVEKANHEKIFKNEEIRTLITAIGAGVNPE-FSLDKIRYN 505
Query: 410 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 469
KIII+TDADVDGAHIR LLLTFF+R+ L ++G +Y+ PPLY+V KQ +Y Y DA+
Sbjct: 506 KIIIMTDADVDGAHIRILLLTFFFRHMFPLIEKGHVYIAQPPLYRVSYNKQNKYIYSDAQ 565
Query: 470 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 529
L++ K+ P N Y +QR+KGLGEM VQLWETT++PE+R L ++ I DAA A+ FS L
Sbjct: 566 LEEWKNQNP-NVRYELQRYKGLGEMDDVQLWETTMDPEKRTLLKVSINDAANADKTFSLL 624
Query: 530 MGARVDTRKELIQ-NAANLVNLD 551
MG V R++ I+ NA ++ N+D
Sbjct: 625 MGDEVSPRRDFIEKNAKSVKNID 647
>sp|Q6G9K5|PARE_STAAS DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain
MSSA476) GN=parE PE=3 SV=2
Length = 663
Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/551 (44%), Positives = 353/551 (64%), Gaps = 21/551 (3%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-K 59
+I TVLHAGGKFG GY SGGLHGVG SVVNALSE LEV + RDG YHQ + G
Sbjct: 93 VIFTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGS 150
Query: 60 PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 119
P + L + T++ F PD +F + F+ + ++ R++E AFL L I L
Sbjct: 151 PSSGLVKKGKTKKTG----TKVTFKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITL 206
Query: 120 RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDA 179
S E+ ++ Y + G++E+V ++N K+ LHDV F + +GI +D+A Q+ +D
Sbjct: 207 NDLRSGKERQEH--YHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVAFQY-NDQ 263
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
YS+++L + N++RT DGGTH G K ++TR N ++ +K KD +L G +REGLT
Sbjct: 264 YSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTA 323
Query: 240 IISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 297
++SVR+P +FEGQTK++LG E R VD V + L YLE + S++ K++ A
Sbjct: 324 VVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQ 383
Query: 298 KAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
+A AA++AR+ R +K+ + + L GKL S E++E+++VEGDSAGGSAK GRD
Sbjct: 384 QAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRD 443
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
R+FQAILPLRGK++N E+ ++KNEEI +I +G GV G DFK E Y+++II+T
Sbjct: 444 RKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRVIIMT 502
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELK 471
DAD DGAHI+ LLLTFF++Y K L +++ +PPLYK+E+G K+V+Y + D EL
Sbjct: 503 DADTDGAHIQVLLLTFFFKYMKPLVQADRVFIALPPLYKLEKGKGKTKRVEYAWTDEELN 562
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 531
K++ +++QR+KGLGEM P QLWETT+NPE R L ++ +ED ++ ++LMG
Sbjct: 563 KLQKELGKG--FTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMG 620
Query: 532 ARVDTRKELIQ 542
+V R+E I+
Sbjct: 621 DKVQPRREWIE 631
>sp|P47249|GYRB_MYCGE DNA gyrase subunit B OS=Mycoplasma genitalium (strain ATCC 33530 /
G-37 / NCTC 10195) GN=gyrB PE=3 SV=1
Length = 650
Score = 453 bits (1166), Expect = e-126, Method: Compositional matrix adjust.
Identities = 249/562 (44%), Positives = 359/562 (63%), Gaps = 22/562 (3%)
Query: 2 IVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPV 61
+ TVLHAGGKF S Y VSGGLHGVG SVVNALS S +V V+R +Y +S G V
Sbjct: 98 VFTVLHAGGKFDNDS--YKVSGGLHGVGASVVNALSSSFKVWVFRQNKKYFLSFSDGGKV 155
Query: 62 TTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRK 121
+ V +S+ GT + F PD V + + I R+++LAFLN + I
Sbjct: 156 --IGDLVQEGNSEKEHGTIVEFVPDFSVMEKS-DYKQTVIVSRLQQLAFLNKGIRIDFV- 211
Query: 122 EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----------VVGFRKDVD-GITID 170
D+ + Q + + GGL EY+ LN +K+PL + V +D + + ++
Sbjct: 212 -DNRKQNPQSFSWKYDGGLVEYIHHLNNEKEPLFNEVIADEKTETVKAVNRDENYTVKVE 270
Query: 171 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 230
+A Q+ + Y+ ++ + N+I T +GGTH+EG + +L + +N ++K +KD D ++
Sbjct: 271 VAFQY-NKTYNQSIFSFCNNINTTEGGTHVEGFRNALVKIINRFAVENKFLKDSDEKINR 329
Query: 231 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 290
+ V EGLT IIS++ PNP++EGQTK +LGN EVR +V+ V E ++ +P ++I+
Sbjct: 330 DDVCEGLTAIISIKHPNPQYEGQTKKKLGNTEVRPLVNSVVSEIFERFMLENPQEANAII 389
Query: 291 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 350
K+L A +A ++ AR+L R+KS S SLPGKLADC++ P SE++IVEGDSAGG+A
Sbjct: 390 RKTLLAQEARRRSQEARELTRRKSPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTA 449
Query: 351 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 410
K GRDR FQAILPLRGKILNVE+ + ++ N EI L+ A+G G+K DF+ E LRY K
Sbjct: 450 KTGRDRYFQAILPLRGKILNVEKSNFEQIFNNAEISALVMAIGCGIK-PDFELEKLRYSK 508
Query: 411 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 470
I+I+TDADVDGAHIRTLLLTFF+R+ L ++G I++ PPLYKV + Y + D +L
Sbjct: 509 IVIMTDADVDGAHIRTLLLTFFFRFMYPLVEQGNIFIAQPPLYKVSYSHKDLYMHTDVQL 568
Query: 471 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 530
++ KS P N + +QR+KGLGEM +QLWETT++P+ R L ++ +EDA+ A+ FS LM
Sbjct: 569 EQWKSQNP-NVKFGLQRYKGLGEMDALQLWETTMDPKVRTLLKVTVEDASIADKAFSLLM 627
Query: 531 GARVDTRKELIQ-NAANLVNLD 551
G V R+E I+ NA ++ N+D
Sbjct: 628 GDEVPPRREFIEKNARSVKNID 649
>sp|Q8CSN9|PARE_STAES DNA topoisomerase 4 subunit B OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=parE PE=3 SV=2
Length = 664
Score = 453 bits (1166), Expect = e-126, Method: Compositional matrix adjust.
Identities = 247/551 (44%), Positives = 352/551 (63%), Gaps = 21/551 (3%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGK- 59
+I TVLHAGGKFG GY SGGLHGVG SVVNALSE LEV + RDG Y Q + G
Sbjct: 93 VIFTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGNIYTQNFKNGGI 150
Query: 60 PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 119
P T L + T++ F PD ++F + F+ + ++ R++E AFL L I L
Sbjct: 151 PATGLVKTGKTKKTG----TKVTFKPDSEIFKSTTTFNFDILSERLQESAFLLKDLKITL 206
Query: 120 RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDA 179
S E+ + Y + G++E+V ++N K+ LHDV F +GI +D+A Q+ +D
Sbjct: 207 TDLRSGKEREEI--YHYEEGIKEFVSYVNEGKEVLHDVTTFAGHSNGIEVDVAFQY-NDQ 263
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
YS+++L + N++RT DGGTH G K ++TR N ++ +KDKD +L G +REGLT
Sbjct: 264 YSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRINELKDKDKNLDGNDIREGLTA 323
Query: 240 IISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 297
IISVR+P +FEGQTK++LG E R VD V E L YLE + S++ K++ A
Sbjct: 324 IISVRIPEELLQFEGQTKSKLGTSEARSAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQ 383
Query: 298 KAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
+A AA++AR+ R +K+ + + L GKL S +++E+++VEGDSAGGSAK GRD
Sbjct: 384 QAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRD 443
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
R+FQAILPLRGK++N E+ ++KNEEI +I +G GV G DFK E Y++III+T
Sbjct: 444 RKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRIIIMT 502
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELK 471
DAD DGAHI+ LLLTFF++Y K L G +++ +PPLYK+E+G K+V+Y + D EL+
Sbjct: 503 DADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKNKKVEYAWTDEELE 562
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 531
++ + +QR+KGLGEM P QLWETT+NPE R L ++ +ED ++ ++LMG
Sbjct: 563 NLQKQLGKG--FILQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMG 620
Query: 532 ARVDTRKELIQ 542
+V R+E I+
Sbjct: 621 DKVAPRREWIE 631
>sp|Q5HPI6|PARE_STAEQ DNA topoisomerase 4 subunit B OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=parE PE=3 SV=2
Length = 664
Score = 453 bits (1166), Expect = e-126, Method: Compositional matrix adjust.
Identities = 247/551 (44%), Positives = 352/551 (63%), Gaps = 21/551 (3%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGK- 59
+I TVLHAGGKFG GY SGGLHGVG SVVNALSE LEV + RDG Y Q + G
Sbjct: 93 VIFTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGNIYTQNFKNGGI 150
Query: 60 PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 119
P T L + T++ F PD ++F + F+ + ++ R++E AFL L I L
Sbjct: 151 PATGLVKTGKTKKTG----TKVTFKPDSEIFKSTTTFNFDILSERLQESAFLLKDLKITL 206
Query: 120 RKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDA 179
S E+ + Y + G++E+V ++N K+ LHDV F +GI +D+A Q+ +D
Sbjct: 207 TDLRSGKEREEI--YHYEEGIKEFVSYVNEGKEVLHDVTTFAGHSNGIEVDVAFQY-NDQ 263
Query: 180 YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239
YS+++L + N++RT DGGTH G K ++TR N ++ +KDKD +L G +REGLT
Sbjct: 264 YSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRINELKDKDKNLDGNDIREGLTA 323
Query: 240 IISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 297
IISVR+P +FEGQTK++LG E R VD V E L YLE + S++ K++ A
Sbjct: 324 IISVRIPEELLQFEGQTKSKLGTSEARSAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQ 383
Query: 298 KAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD 355
+A AA++AR+ R +K+ + + L GKL S +++E+++VEGDSAGGSAK GRD
Sbjct: 384 QAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRD 443
Query: 356 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 415
R+FQAILPLRGK++N E+ ++KNEEI +I +G GV G DFK E Y++III+T
Sbjct: 444 RKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGV-GTDFKIEDSNYNRIIIMT 502
Query: 416 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYCYDDAELK 471
DAD DGAHI+ LLLTFF++Y K L G +++ +PPLYK+E+G K+V+Y + D EL+
Sbjct: 503 DADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKNKKVEYAWTDEELE 562
Query: 472 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 531
++ + +QR+KGLGEM P QLWETT+NPE R L ++ +ED ++ ++LMG
Sbjct: 563 NLQKQLGKG--FILQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMG 620
Query: 532 ARVDTRKELIQ 542
+V R+E I+
Sbjct: 621 DKVAPRREWIE 631
>sp|P0C5C5|GYRB_MYCTU DNA gyrase subunit B OS=Mycobacterium tuberculosis GN=gyrB PE=1
SV=1
Length = 675
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 253/587 (43%), Positives = 365/587 (62%), Gaps = 46/587 (7%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+++T LHAGGKF S Y++SGGLHGVG+SVVNALS LEV + RDG E+ Q Y + +P
Sbjct: 98 VVMTQLHAGGKF--DSDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEP 155
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
+ + G+ +RFW D VF T ++D T+A R++E+AFLN LTI L
Sbjct: 156 LGLKQGA-----PTKKTGSTVRFWADPAVFETT-EYDFETVARRLQEMAFLNKGLTINLT 209
Query: 121 ----------------------------KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 152
E + P K + + + GGL ++V+ +N K
Sbjct: 210 DERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKN 269
Query: 153 PLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 211
+H +V F G +++A+QW + YS+++ +AN+I T +GGTH EG +++LT +
Sbjct: 270 AIHSSIVDFSGKGTGHEVEIAMQWNA-GYSESVHTFANTINTHEGGTHEEGFRSALTSVV 328
Query: 212 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 271
N K K +KDKD +L+G+ +REGL +ISV+V P+FEGQTKT+LGN EV+ V +
Sbjct: 329 NKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVC 388
Query: 272 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 331
E LT + E +P +++K++S+ +A +AA++AR+LVR+KS LPGKLADC ST
Sbjct: 389 NEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRST 448
Query: 332 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 391
P +SE+++VEGDSAGGSAK GRD FQAILPLRGKI+NVE+ + KN E+Q +I A
Sbjct: 449 DPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITA 508
Query: 392 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 451
LG G+ E F LRYHKI+++ DADVDG HI TLLLT +R+ + L + G +++ PP
Sbjct: 509 LGTGIHDE-FDIGKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPP 567
Query: 452 LYKVE-RGKQVQYCYDDAEL-----KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLN 505
LYK++ + ++ Y D E +K+ N IQR+KGLGEM +LWETT++
Sbjct: 568 LYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKEDGIQRYKGLGEMDAKELWETTMD 627
Query: 506 PEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 551
P R+L+Q+ ++DAA A+ +FS LMG VD R+ I +NA ++ LD
Sbjct: 628 PSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLD 674
>sp|A5TY73|GYRB_MYCTA DNA gyrase subunit B OS=Mycobacterium tuberculosis (strain ATCC
25177 / H37Ra) GN=gyrB PE=3 SV=2
Length = 675
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 253/587 (43%), Positives = 365/587 (62%), Gaps = 46/587 (7%)
Query: 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP 60
+++T LHAGGKF S Y++SGGLHGVG+SVVNALS LEV + RDG E+ Q Y + +P
Sbjct: 98 VVMTQLHAGGKF--DSDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEP 155
Query: 61 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 120
+ + G+ +RFW D VF T ++D T+A R++E+AFLN LTI L
Sbjct: 156 LGLKQGA-----PTKKTGSTVRFWADPAVFETT-EYDFETVARRLQEMAFLNKGLTINLT 209
Query: 121 ----------------------------KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 152
E + P K + + + GGL ++V+ +N K
Sbjct: 210 DERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKN 269
Query: 153 PLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 211
+H +V F G +++A+QW + YS+++ +AN+I T +GGTH EG +++LT +
Sbjct: 270 AIHSSIVDFSGKGTGHEVEIAMQWNA-GYSESVHTFANTINTHEGGTHEEGFRSALTSVV 328
Query: 212 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 271
N K K +KDKD +L+G+ +REGL +ISV+V P+FEGQTKT+LGN EV+ V +
Sbjct: 329 NKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVC 388
Query: 272 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 331
E LT + E +P +++K++S+ +A +AA++AR+LVR+KS LPGKLADC ST
Sbjct: 389 NEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRST 448
Query: 332 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 391
P +SE+++VEGDSAGGSAK GRD FQAILPLRGKI+NVE+ + KN E+Q +I A
Sbjct: 449 DPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITA 508
Query: 392 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 451
LG G+ E F LRYHKI+++ DADVDG HI TLLLT +R+ + L + G +++ PP
Sbjct: 509 LGTGIHDE-FDIGKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPP 567
Query: 452 LYKVE-RGKQVQYCYDDAEL-----KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLN 505
LYK++ + ++ Y D E +K+ N IQR+KGLGEM +LWETT++
Sbjct: 568 LYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKEDGIQRYKGLGEMDAKELWETTMD 627
Query: 506 PEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 551
P R+L+Q+ ++DAA A+ +FS LMG VD R+ I +NA ++ LD
Sbjct: 628 PSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLD 674
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,405,526
Number of Sequences: 539616
Number of extensions: 8663887
Number of successful extensions: 26926
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 25849
Number of HSP's gapped (non-prelim): 270
length of query: 555
length of database: 191,569,459
effective HSP length: 123
effective length of query: 432
effective length of database: 125,196,691
effective search space: 54084970512
effective search space used: 54084970512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)