Query 008738
Match_columns 555
No_of_seqs 195 out of 1450
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:35:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gfh_A DNA topoisomerase 2; to 100.0 3E-143 9E-148 1257.4 28.4 520 1-551 119-664 (1177)
2 3k9f_C DNA topoisomerase 4 sub 100.0 8E-100 3E-104 741.5 18.2 237 309-548 21-261 (268)
3 3nuh_B DNA gyrase subunit B; t 100.0 9.8E-98 3E-102 767.9 14.4 249 305-555 3-420 (420)
4 3m4i_A DNA gyrase subunit B; G 100.0 1.5E-95 5E-100 704.7 12.7 228 325-555 9-242 (242)
5 2xkj_E Topoisomerase IV; type 100.0 2.7E-89 9.2E-94 759.9 17.8 255 291-550 2-257 (767)
6 3lnu_A Topoisomerase IV subuni 100.0 9.3E-84 3.2E-88 680.4 28.0 298 1-313 108-408 (408)
7 1ei1_A DNA gyrase B, GYRB; ATP 100.0 1.6E-77 5.4E-82 634.4 28.8 298 1-309 92-390 (391)
8 3l4j_A DNA topoisomerase 2; to 100.0 2.7E-79 9.1E-84 672.9 14.7 229 319-551 4-244 (757)
9 3qx3_A DNA topoisomerase 2-bet 100.0 9.7E-79 3.3E-83 669.0 9.6 221 319-545 34-267 (803)
10 1s16_A Topoisomerase IV subuni 100.0 1.1E-75 3.9E-80 620.4 29.5 294 2-308 90-387 (390)
11 2xcs_B DNA gyrase subunit B, D 100.0 3E-75 1E-79 640.5 13.2 198 318-550 3-200 (692)
12 1kij_A DNA gyrase subunit B; t 100.0 7.6E-72 2.6E-76 591.9 28.3 296 2-309 91-389 (390)
13 1pvg_A DNA topoisomerase II; G 100.0 2.9E-71 1E-75 589.1 21.2 272 1-304 124-416 (418)
14 1zxm_A TOPO IIA ATPase, DNA to 100.0 2.7E-69 9.4E-74 571.6 19.0 275 1-300 112-394 (400)
15 3cwv_A DNA gyrase, B subunit, 100.0 1.2E-64 4E-69 532.2 23.7 275 1-297 77-362 (369)
16 4duh_A DNA gyrase subunit B; s 100.0 2.8E-36 9.5E-41 295.3 10.8 128 1-138 93-220 (220)
17 4emv_A DNA topoisomerase IV, B 100.0 2.4E-36 8.1E-41 296.5 9.4 127 1-138 97-226 (226)
18 3fv5_A DNA topoisomerase 4 sub 100.0 4.4E-29 1.5E-33 241.6 8.5 124 2-136 76-201 (201)
19 2q2e_B Type 2 DNA topoisomeras 99.9 3.4E-28 1.2E-32 269.7 0.1 227 2-280 93-334 (621)
20 3ttz_A DNA gyrase subunit B; p 99.9 4.1E-24 1.4E-28 206.0 11.7 106 29-140 92-198 (198)
21 2zbk_B Type 2 DNA topoisomeras 99.3 7.9E-14 2.7E-18 152.6 -0.9 205 2-249 89-310 (530)
22 1b63_A MUTL; DNA mismatch repa 99.3 1.3E-11 4.5E-16 128.0 14.8 210 6-251 76-302 (333)
23 3na3_A DNA mismatch repair pro 99.2 8.2E-11 2.8E-15 122.2 15.2 214 4-251 78-305 (348)
24 3h4l_A DNA mismatch repair pro 99.1 5.9E-10 2E-14 116.7 15.3 215 4-251 75-328 (367)
25 1h7s_A PMS1 protein homolog 2; 98.8 6.8E-09 2.3E-13 108.8 9.1 134 6-149 86-232 (365)
26 1mu5_A Type II DNA topoisomera 98.6 2.3E-06 7.9E-11 92.5 20.0 105 3-122 91-209 (471)
27 1yc1_A HSP 86, heat shock prot 80.4 4.2 0.00014 40.1 8.0 95 21-123 157-252 (264)
28 3o0i_A HSP90AA1 protein; HSP90 76.6 9.4 0.00032 37.4 9.1 93 21-123 149-244 (256)
29 3t0h_A Heat shock protein HSP 76.1 11 0.00037 36.2 9.3 92 21-123 121-216 (228)
30 2ior_A Chaperone protein HTPG; 75.6 9.2 0.00032 36.8 8.7 85 22-120 139-231 (235)
31 2zbk_B Type 2 DNA topoisomeras 74.6 19 0.00066 39.0 11.8 98 167-280 350-456 (530)
32 2wer_A ATP-dependent molecular 71.5 19 0.00064 34.1 9.7 96 21-123 115-211 (220)
33 3peh_A Endoplasmin homolog; st 59.9 42 0.0014 33.2 9.8 96 21-123 136-232 (281)
34 2gqp_A Endoplasmin; GRP94, HSP 59.1 28 0.00097 33.4 8.3 96 21-124 126-222 (236)
35 3nmq_A Heat shock protein HSP 58.1 36 0.0012 32.9 8.8 96 21-124 128-224 (239)
36 1t6t_1 Putative protein; struc 45.2 5.7 0.00019 34.3 0.6 26 407-432 60-86 (118)
37 1qy5_A Endoplasmin; GRP94, NEC 44.0 51 0.0017 32.3 7.5 94 22-123 123-217 (269)
38 2q2e_B Type 2 DNA topoisomeras 39.0 1.2E+02 0.004 33.5 10.1 89 167-268 353-449 (621)
39 3ied_A Heat shock protein; HSP 34.0 80 0.0027 31.0 6.9 84 22-109 174-260 (272)
40 1y4s_A Chaperone protein HTPG; 32.2 1.2E+02 0.0042 32.9 8.8 87 21-117 118-210 (559)
41 2fcj_A Small toprim domain pro 31.8 11 0.00037 32.6 0.3 70 407-493 49-119 (119)
42 2ioq_A Chaperone protein HTPG; 23.1 1.3E+02 0.0043 33.2 6.9 87 21-117 118-210 (624)
43 2o1u_A Endoplasmin; GRP94, HSP 22.7 1.5E+02 0.0053 32.8 7.5 91 21-121 139-232 (666)
44 3rkc_A Capsid protein; viral p 20.4 22 0.00075 30.8 0.1 17 357-374 76-92 (148)
No 1
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-143 Score=1257.42 Aligned_cols=520 Identities=23% Similarity=0.332 Sum_probs=417.2
Q ss_pred CEEeeecCCCCCCCCCCceeeccccCCcchhhhhhhcceeEEEEE--eCCEEEEEEecCCcCCccceeeccCCCCCCCCc
Q 008738 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW--RDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQG 78 (555)
Q Consensus 1 ~v~t~lhaGgkF~~~~~~yk~sGGlhGvGasvvNalS~~f~V~v~--r~gk~y~q~f~~G~~~~~~~~~~~~~~~~~~~G 78 (555)
||||+||||||||++ +||+||||||||+|||||||++|.|||. |+|+.|+|+|++|+++.+++.+ .....+++|
T Consensus 119 vv~t~LhAGgKFd~~--~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i--~~~~~~~tG 194 (1177)
T 4gfh_A 119 MIFGHLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKI--TSYKKGPSY 194 (1177)
T ss_dssp HHHHSSSEESCCCCS--SCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEE--EECCSSCCC
T ss_pred eeccccccccCcCCC--CCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCee--ecCCCCCCc
Confidence 589999999999998 9999999999999999999999999986 8999999999999999877655 122345789
Q ss_pred eEEEEEeCcccccccccCCHHHHHHHHHHHhhcC---CCcEEEEeecCCCCCCCcceeEeccccHHHHHHHHhcCCCCCC
Q 008738 79 TRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN---PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH 155 (555)
Q Consensus 79 T~V~F~PD~~iF~~~~~~~~~~l~~Rl~elA~Ln---~gl~I~l~der~~~~~~~~~~f~~~~Gl~dyv~~l~~~~~~~~ 155 (555)
|+|+||||++||++ ..|+++++..|++++|+|| +++.+.+++++. +.++|++|+.+|++.++..+..++
T Consensus 195 T~V~F~PD~~iF~~-~~~~~d~l~~~~r~~~~l~~~~~~~~~~~~g~~~-------~~~~f~~gi~~y~~~l~~~~~~~~ 266 (1177)
T 4gfh_A 195 TKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNGKSL-------KIRNFKNYVELYLKSLEKKRQLDN 266 (1177)
T ss_dssp EEEEEEECHHHHTC-SSCCHHHHHHHHHHHHHHHHHSSSCEEEESSCBC-------CCCSHHHHHGGGTTTC--------
T ss_pred eEEEEEeCHHhcCC-cEeCHHHHHHHHHHHHHhcCCCceEEEEecCCee-------EEeeccchhhhhhhhhccceeccc
Confidence 99999999999985 5799999999999988887 457789988763 457889999999987766543222
Q ss_pred --------ceeEEEEeecceEEEEEEeecCCCCCceeeeeeCccccCCCCcchHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 008738 156 --------DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 227 (555)
Q Consensus 156 --------~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~k~~~ 227 (555)
+...+..+..+.+||||++|+ +++ ++++||||+|+|++|||||+||++||+++||+|+++.+ +.+
T Consensus 267 ~~~~~~~~~~~~~~~e~~~~~~eva~~~~-d~~-~~~~SFvN~I~T~~GGTHv~gfr~altr~in~~~~k~~-----~~~ 339 (1177)
T 4gfh_A 267 GEDGAAKSDIPTILYERINNRWEVAFAVS-DIS-FQQISFVNSIATTMGGTHVNYITDQIVKKISEILKKKK-----KKS 339 (1177)
T ss_dssp ---------CCSCEEEEEETTEEEEEEEC-SSS-CEEEEEESSCEETTEEHHHHHHHHHHHHHHHHHHHHHS-----SSC
T ss_pred cccccccCCCceEEEEeccceEEEeeccc-CCc-ceeeeeeeeeecCCCchHHHHHHHHHHHHHHHHhhhhc-----ccc
Confidence 112233344566799999999 444 34689999999999999999999999999999987654 346
Q ss_pred CCHhhhhcccEEEEEEeecCCCCCCccccccCChhhhhhhhhhhH-HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008738 228 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ-EYLTEYLELHPDVLDSILSKSLSALKAALAAKRA 306 (555)
Q Consensus 228 i~~~dIregL~~~vsv~i~nP~FegQTKekL~n~~v~~~v~~~v~-~~l~~~l~~n~~~~~~i~~~~~~~~~ar~aakka 306 (555)
++++|||+||++||||+|+||+|+||||++|+|+.....+...+. +.+..++ +..++ ++++.+++++++++++
T Consensus 340 ~~~~DIregl~avISvki~~PqFegQTK~kL~s~~~~~~~~~~~~~~~~~~~~--~~~i~----~~~~~~a~~~~~~~~~ 413 (1177)
T 4gfh_A 340 VKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIM--KTDLA----TRMFEIADANEENALK 413 (1177)
T ss_dssp CCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCHHHHHHHT--TSHHH----HHHHHHHTTCC-----
T ss_pred CCHHHHhCCceEEEEeeeccCccccchhhhhcCchhcceeeccchHHHhhhhh--hHHHH----HHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999865544433332 2233332 22344 4444444444443334
Q ss_pred HHHHhhccccccCCCCCCCCCCC---CCCCCCceeEEeeccCCCccccccC---CCCceeecccCcccccccccCHHHHh
Q 008738 307 RDLVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQGR---DRRFQAILPLRGKILNVERKDEAAMY 380 (555)
Q Consensus 307 r~~~~~k~~~~~~~lpgKL~dc~---~~~~~~~eL~lvEGDSA~gsa~~gR---dr~~qai~PLrGKiLNv~ka~~~ki~ 380 (555)
+...++|+.+ ..+ +||+||+ +++|++|||||||||||||||++|| +|+||||||||||||||++|+.++|+
T Consensus 414 k~~~~~k~~~--~~~-~KL~d~~~~~skd~~~~ELfiVEGDSAgGsAk~Grak~~Rd~QAIlPLRGKiLNv~ka~~~kil 490 (1177)
T 4gfh_A 414 KSDGTRKSRI--TNY-PKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQIL 490 (1177)
T ss_dssp -------CCC--CSC-TTCBCCTTTTTTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHH
T ss_pred hhhhhcchhh--ccc-cccccccccCCCCccceEEEEecCCchhhhHhhcccccCcccEEecccCceechhhhhHHHHHh
Confidence 4444444432 223 4999987 6899999999999999999999999 89999999999999999999999999
Q ss_pred hCHhHHHHHHHhcCCccCCcCcccccceeeEEEeecCCCCCcchHHhHHHHHHHHHHHhhh-cCcEEEecCCeEEEEeC-
Q 008738 381 KNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVERG- 458 (555)
Q Consensus 381 ~N~Ei~~li~alG~~~~~~~~~~~~LRYgkiiimtDaD~DG~HI~~Llltff~~~~p~Li~-~g~v~~~~tPl~kv~~g- 458 (555)
+|+||++|++|||||++.+.+|+++||||||||||||||||+|||||||||||||||+||+ +||||+|+||||||+.|
T Consensus 491 ~N~EI~~ii~alG~g~g~~~~d~~~LRY~KIiIMTDADvDGsHIrtLLltfF~r~~p~Lie~~G~vyia~pPLykv~~~k 570 (1177)
T 4gfh_A 491 KNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITK 570 (1177)
T ss_dssp HCHHHHHHHHHTTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECS
T ss_pred hcHHHHHHHHHhCCCcCcccCccccCCCCeEEEeecCCCCcchHHHHHHHHHHHhChhhEeeCCEEEEEecceEEEEEec
Confidence 9999999999999999544459999999999999999999999999999999999999999 99999999999999865
Q ss_pred --CeEEEeeCHHHHHHHHHhCCCCCCccceeeeccccCChhhHHhhhcCCCcee--EEeeccccHHHHHHHHHHhcCCCc
Q 008738 459 --KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRM--LKQLVIEDAAEANVVFSSLMGARV 534 (555)
Q Consensus 459 --k~~~~~~s~~e~~~~~~~~~~~~~~~i~ryKGLGe~~~~~l~et~~~p~~r~--l~~v~~~d~~~~~~~f~~lmg~~~ 534 (555)
|..+|||+++|+++|++..+..++|+||||||||||+|+|||||||||++|+ +.+++++|++.++++ |||+++
T Consensus 571 ~~k~~~~~y~~~e~e~~~~~~~~~~~~~iqryKGLGEm~~~ql~Ett~~~d~~~~~~~~v~~~d~~~~d~~---f~~~~~ 647 (1177)
T 4gfh_A 571 PTKNTIAFYNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLA---FSKKKA 647 (1177)
T ss_dssp SSCCEEEESSHHHHHHHHHHTGGGSCEEEEEC----CCCHHHHHHHHHTCTTTEEEEECCCTTTHHHHHHH---HCGGGH
T ss_pred CCcceEEEechHHHHHHHHHhcCCCCcceeecccCCcccHHHHHHHHhCcccceEEEEEcccccHHHHHHH---Hhccch
Confidence 4578999999999999887655679999999999999999999888887554 556777777665555 479999
Q ss_pred hHHHHHHHhccccCCcC
Q 008738 535 DTRKELIQNAANLVNLD 551 (555)
Q Consensus 535 ~~Rk~~i~~~~~~~~~~ 551 (555)
++||+||++|++...+|
T Consensus 648 ~~RkewI~~~~~~~~~d 664 (1177)
T 4gfh_A 648 DDRKEWLRQYEPGTVLD 664 (1177)
T ss_dssp HHHHHHHHHCCTTCCCC
T ss_pred hhHHHHHHhcCcccccc
Confidence 99999999999986554
No 2
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=100.00 E-value=8.5e-100 Score=741.51 Aligned_cols=237 Identities=50% Similarity=0.854 Sum_probs=212.2
Q ss_pred HHhhccccccCCCCCCCCCCCCCCCCCceeEEeeccCCCccccccCCCCceeecccCcccccccccCHHHHhhCHhHHHH
Q 008738 309 LVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 388 (555)
Q Consensus 309 ~~~~k~~~~~~~lpgKL~dc~~~~~~~~eL~lvEGDSA~gsa~~gRdr~~qai~PLrGKiLNv~ka~~~ki~~N~Ei~~l 388 (555)
..|||+++....|||||+||++++|++|||||||||||||||+|||||+||||||||||||||++++.++|++|+||++|
T Consensus 21 ~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsakqgRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~i 100 (268)
T 3k9f_C 21 DKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTM 100 (268)
T ss_dssp ---------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHHH
T ss_pred hhhhhhccccCCCCccccCcccCCCCceeEEEeeeecccccccccCccccccccccCCcchhhhcCCHHHHhhCHHHHHH
Confidence 35677888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccCCcCcccccceeeEEEeecCCCCCcchHHhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCe----EEEe
Q 008738 389 IRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ----VQYC 464 (555)
Q Consensus 389 i~alG~~~~~~~~~~~~LRYgkiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~tPl~kv~~gk~----~~~~ 464 (555)
++||||++ +.+||+++||||||||||||||||+||++|||||||||||+||++||||+|+||||||++||+ +.||
T Consensus 101 i~alG~g~-g~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPLykv~~gk~~~~~~~Y~ 179 (268)
T 3k9f_C 101 IYTIGAGV-GADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 179 (268)
T ss_dssp HHHHCSCC---CCCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEEE
T ss_pred HHHhCCCC-CccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhCCcEEEecCCeEEEEeCCCcccceEEE
Confidence 99999998 578999999999999999999999999999999999999999999999999999999999874 4899
Q ss_pred eCHHHHHHHHHhCCCCCCccceeeeccccCChhhHHhhhcCCCceeEEeeccccHHHHHHHHHHhcCCCchHHHHHHHhc
Q 008738 465 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNA 544 (555)
Q Consensus 465 ~s~~e~~~~~~~~~~~~~~~i~ryKGLGe~~~~~l~et~~~p~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~Rk~~i~~~ 544 (555)
||++|+++|+++++ ++|+||||||||||+|+|||||||||++|+|.||+++|+++++++|++|||++|++||+||++|
T Consensus 180 y~e~E~~~~~~~~~--~~~~IqryKGLGEm~~~qlweTtmdP~~R~L~~Vti~da~~a~~~f~~LMG~~v~~Rk~fI~~~ 257 (268)
T 3k9f_C 180 WTDGELEELRKQFG--KGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 257 (268)
T ss_dssp CSHHHHHHHHHHSC--TTCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECSCSHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred eCHHHHHHHHHhcC--CCCCceEecCCCccCHHHHHHHhcCccceeEEEEEcCcHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 99999999999863 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 008738 545 ANLV 548 (555)
Q Consensus 545 ~~~~ 548 (555)
+..+
T Consensus 258 a~~~ 261 (268)
T 3k9f_C 258 VKFT 261 (268)
T ss_dssp CCCC
T ss_pred hHHh
Confidence 9865
No 3
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli}
Probab=100.00 E-value=9.8e-98 Score=767.94 Aligned_cols=249 Identities=51% Similarity=0.871 Sum_probs=182.1
Q ss_pred HHHHHHhhccccccCCCCCCCCCCCCCCCCCceeEEeeccCCCccccccCCCCceeecccCcccccccccCHHHHhhCHh
Q 008738 305 RARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEE 384 (555)
Q Consensus 305 kar~~~~~k~~~~~~~lpgKL~dc~~~~~~~~eL~lvEGDSA~gsa~~gRdr~~qai~PLrGKiLNv~ka~~~ki~~N~E 384 (555)
+||+++|||+++....|||||+||+++||++|||||||||||||||||||||+||||||||||||||++++.++|++|+|
T Consensus 3 ~are~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~n~E 82 (420)
T 3nuh_B 3 AAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 82 (420)
T ss_dssp ---------------CCBTTBBCCSCCSTTSCEEEEEEHHHHHHHHHHHSCTTTEEEEEECC-------------CCCHH
T ss_pred HHHHHHHhhcccccCCCCccccccccCCccceeEEEEeccccccccccccccccccccccCCcchhHhhccHHHHhcCHH
Confidence 57888999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccCCcCcccccceeeEEEeecCCCCCcchHHhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEe
Q 008738 385 IQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 464 (555)
Q Consensus 385 i~~li~alG~~~~~~~~~~~~LRYgkiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~tPl~kv~~gk~~~~~ 464 (555)
|++||+|||||++.++||+++||||||||||||||||+||++|||||||||||+||++||||+|+||||||++||++.||
T Consensus 83 i~~ii~alG~~~g~~~~~~~~LRY~kIiIMTDaDvDGsHIr~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~y~ 162 (420)
T 3nuh_B 83 VATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYI 162 (420)
T ss_dssp HHHHHHHHC-------------CCSEEEECCCSSTTTTHHHHHHHHHHHHHCHHHHHTTCEEEECCCSEEEEETTEEEEE
T ss_pred HHHHHHHhCCCCCcCCCChhhcCcCeEEEecCCCCCcccchhHHHHHHHHHhHHHHHCCcEEEecCceEEEEcCCeEEEe
Confidence 99999999999965689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHHHHhCC------------------------------------------------------------------
Q 008738 465 YDDAELKKVKSSFP------------------------------------------------------------------ 478 (555)
Q Consensus 465 ~s~~e~~~~~~~~~------------------------------------------------------------------ 478 (555)
||++|+++|+.+..
T Consensus 163 ~~~~e~~~~~~~~al~~~~l~~~~~~~~~~g~~L~~l~~~~~~~~~~i~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 242 (420)
T 3nuh_B 163 KDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTV 242 (420)
T ss_dssp CCHHHHHHHHHHHHHTTEEEEESSSCSEEEHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHSCCCCHHHHHCHHHH
T ss_pred CCHHHHHHHHhhccccCeEEEeCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhcccCChhhhcCHHHH
Confidence 99999999976410
Q ss_pred --------------------------------------------------------------------------------
Q 008738 479 -------------------------------------------------------------------------------- 478 (555)
Q Consensus 479 -------------------------------------------------------------------------------- 478 (555)
T Consensus 243 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~~~~l~~~~~~s~ey~~l~~~~~~l~~~~~~~~~ 322 (420)
T 3nuh_B 243 TRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF 322 (420)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEEECC---CEEEEEEEECSSSEEEEECCHHHHHSHHHHHHHHHHHHHHHTTTTSEE
T ss_pred HHHHHHHHHHhhhccccccceEEEEeecccCcceeEEEEEEecCcceEEEEChHHhcCHHHHHHHHHHHHHHHhhcCCcE
Confidence
Q ss_pred -----------------------CCCCccceeeeccccCChhhHHhhhcCCCceeEEeeccccHHHHHHHHHHhcCCCch
Q 008738 479 -----------------------SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVD 535 (555)
Q Consensus 479 -----------------------~~~~~~i~ryKGLGe~~~~~l~et~~~p~~r~l~~v~~~d~~~~~~~f~~lmg~~~~ 535 (555)
+.++..||||||||||||+|||||||||++|+|.||+|+|+.+||++|+.|||+.|+
T Consensus 323 i~~~~~~~~v~~~~~~~~~l~~~~~kG~~IQRYKGLGEMNpeQLWETTMdP~~R~LLqV~IeDa~~AD~iFt~LMGD~VE 402 (420)
T 3nuh_B 323 IERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVE 402 (420)
T ss_dssp EEESSCEEEESSHHHHHHHHHHHHTTTCEEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHCSCC--
T ss_pred EEeCCcceecCCHHHHHHHHHHHhhccceeeeeccCCCCChhhhhhcccCcccceEEEEEehhHHHHHHHHHHhcCCCch
Confidence 235678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCcCCCCC
Q 008738 536 TRKELIQNAANLVNLDHLDI 555 (555)
Q Consensus 536 ~Rk~~i~~~~~~~~~~~ld~ 555 (555)
|||+||++||.. +.||||
T Consensus 403 PRR~FIe~NAL~--V~nLDi 420 (420)
T 3nuh_B 403 PRRAFIEENALK--AANIDI 420 (420)
T ss_dssp --------------------
T ss_pred HhHHHHHhhhcc--cccCCC
Confidence 999999999986 578987
No 4
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A*
Probab=100.00 E-value=1.5e-95 Score=704.70 Aligned_cols=228 Identities=47% Similarity=0.818 Sum_probs=176.6
Q ss_pred CCCCCCCCCCCceeEEeeccCCCccccccCCCCceeecccCcccccccccCHHHHhhCHhHHHHHHHhcCCccCCcCccc
Q 008738 325 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 404 (555)
Q Consensus 325 L~dc~~~~~~~~eL~lvEGDSA~gsa~~gRdr~~qai~PLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~~~~~~~~~~~ 404 (555)
..|-.++||++|||||||||||||||+|||||+||||||||||||||++++.++|++|+||++|++||||++ +.+||++
T Consensus 9 ~~~~~~~d~~~~eLflvEGDSAgGsak~gRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~alG~~~-g~~~d~~ 87 (242)
T 3m4i_A 9 VDDDDKTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIG 87 (242)
T ss_dssp ------CCGGGEEEEEEESSSCC---------CEEEEEEECC--------CHHHHTTCHHHHHHHHHHCSCS-GGGCCGG
T ss_pred CCCccccChhheEEEEEecccccchhhhccccccccccccCCcchhhhhcCHHHHhhCHHHHHHHHHhCCCc-Ccccccc
Confidence 345568999999999999999999999999999999999999999999999999999999999999999998 5789999
Q ss_pred ccceeeEEEeecCCCCCcchHHhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCC-eEEEeeCHHHHHHHHHhCCC-CCC
Q 008738 405 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK-QVQYCYDDAELKKVKSSFPS-NAL 482 (555)
Q Consensus 405 ~LRYgkiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~tPl~kv~~gk-~~~~~~s~~e~~~~~~~~~~-~~~ 482 (555)
+||||||||||||||||+||++|||||||||||+||++||||+|+||||||++|| ++.||||++|+++|++++.. .++
T Consensus 88 ~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~y~ys~~E~~~~~~~~~~~~~~ 167 (242)
T 3m4i_A 88 KLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKK 167 (242)
T ss_dssp GCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCTHHHHTTCEEEECCCSEEECCTTSCCEEESSHHHHHHHHHHHHHHTCC
T ss_pred ccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCcEEEecCceEEEEeCCccEEEeCCHHHHHHHHHHhhhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999 89999999999999987531 233
Q ss_pred c----cceeeeccccCChhhHHhhhcCCCceeEEeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccCCcCCCCC
Q 008738 483 Y----SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 555 (555)
Q Consensus 483 ~----~i~ryKGLGe~~~~~l~et~~~p~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~Rk~~i~~~~~~~~~~~ld~ 555 (555)
| +||||||||||+|+|||||||||++|+|.||+++|++.++++|++|||+++++||+||++|+.+ +.+|||
T Consensus 168 ~~k~~~IqryKGLGEm~~~ql~ettmdp~~R~L~~V~i~d~~~a~~~f~~LMG~~v~~Rk~~I~~~~~~--~~~ld~ 242 (242)
T 3m4i_A 168 INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKD--VRFLDV 242 (242)
T ss_dssp CCTTTSEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHHHC-----------------------
T ss_pred cccccccceEcCcCCCCHHHHHHHhcCccceeeEEeccCcHHHHHHHHHHHhCCCcHHHHHHHHHHhhh--hhhccC
Confidence 5 9999999999999999999999999999999999999999999999999999999999999986 467875
No 5
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=100.00 E-value=2.7e-89 Score=759.92 Aligned_cols=255 Identities=43% Similarity=0.698 Sum_probs=225.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCceeEEeeccCCCccccccCCCCceeecccCccccc
Q 008738 291 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILN 370 (555)
Q Consensus 291 ~~~~~~~~ar~aakkar~~~~~k~~~~~~~lpgKL~dc~~~~~~~~eL~lvEGDSA~gsa~~gRdr~~qai~PLrGKiLN 370 (555)
++++.+++||++++++ .+||+.+....|||||+||++++|++|||||||||||||||||||||+|||||||||||||
T Consensus 2 ~k~~~~~~ar~~~~~~---~~rk~~~~~~~lpgKL~dc~~~~~~~~eL~lvEGDSAgGsak~gRdr~~qailPLRGKiLN 78 (767)
T 2xkj_E 2 EMAISKAGRRLKAAKK---VERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILN 78 (767)
T ss_dssp --------------------CCCCCSSSCSSTTTCBCCCC-CGGGCEEEEEEHHHHHHHHHHHSCTTTEEEEEESSCCCC
T ss_pred hHHHHHHHHHHHHHHH---hhhccccccccCcHhhHhcccCCCcceEEEEeeCCCCcchhhhcCCcccccccccccchhh
Confidence 5777888888755443 3467788888999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHhhCHhHHHHHHHhcCCccCCcCcccccceeeEEEeecCCCCCcchHHhHHHHHHHHHHHhhhcCcEEEecC
Q 008738 371 VERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 450 (555)
Q Consensus 371 v~ka~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRYgkiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~t 450 (555)
|++|+.++|++|+||++|++||||+++ . .|+++||||||||||||||||+||++|||||||||||+||++||||+|+|
T Consensus 79 v~ka~~~ki~~n~Ei~~i~~alG~~~g-~-~~~~~lRY~kiiImtDaDvDG~HI~~Llltff~r~~p~Li~~G~vy~a~p 156 (767)
T 2xkj_E 79 TWEVSSDEVLASQEVHDIAIAIGVDPG-S-DDLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 156 (767)
T ss_dssp CTTSCTTTGGGSHHHHHHHHHHTCCTT-C-CCCTTCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEEECC
T ss_pred hhcCCHHHHhccHHHHHHHHHhCCCcc-c-ccccccccceEEEeecCCCCcchhhHHHHHHHHHHhHHHHhcCcEEEecC
Confidence 999999999999999999999999985 3 49999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCeEEEeeCHHHHHHHHHhCCCCCCccceeeeccccCChhhHHhhhcCCCceeEEeeccccHHHHHHHHHHhc
Q 008738 451 PLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 530 (555)
Q Consensus 451 Pl~kv~~gk~~~~~~s~~e~~~~~~~~~~~~~~~i~ryKGLGe~~~~~l~et~~~p~~r~l~~v~~~d~~~~~~~f~~lm 530 (555)
|||||++||++.||||++|+++|++++++.++|+||||||||||||+|||||||||++|+|.+|+++|++.++++|++||
T Consensus 157 Pl~kv~~gk~~~y~~~~~e~~~~~~~~~~~~~~~IqRYKGLGEmnp~ql~ETtmdp~~R~L~~v~i~da~~ad~~f~~lm 236 (767)
T 2xkj_E 157 PLFRIDIGKDVHYALDDEELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDKLL 236 (767)
T ss_dssp CSEEEEETTEEEEESSHHHHHHHHHTCCSSCCCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECCSHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEeeeCHHHHHHHHHHhhcCCCCceecccCCCCCCHHHHhHhhcCccceEEEEEEcccHHHHHHHHHHHh
Confidence 99999999999999999999999999865567999999999999999999999999999999999999999999999999
Q ss_pred CC-CchHHHHHHHhccccCCc
Q 008738 531 GA-RVDTRKELIQNAANLVNL 550 (555)
Q Consensus 531 g~-~~~~Rk~~i~~~~~~~~~ 550 (555)
|+ ++++||+||++|+..+++
T Consensus 237 gkk~ve~RKewI~~~~~~~~~ 257 (767)
T 2xkj_E 237 AKKRAADRKQWLEQKGNLADI 257 (767)
T ss_dssp CGGGHHHHHHHHHHHGGGCC-
T ss_pred CCCCchHHHHHHHhcCccccc
Confidence 98 699999999999875433
No 6
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=100.00 E-value=9.3e-84 Score=680.36 Aligned_cols=298 Identities=30% Similarity=0.528 Sum_probs=248.5
Q ss_pred CEEeeecCCCCCCCCCCceeeccccCCcchhhhhhhcceeEEEEEeCCEEEEEEecCCcCCccceeeccCCCCC--CCCc
Q 008738 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSK--DRQG 78 (555)
Q Consensus 1 ~v~t~lhaGgkF~~~~~~yk~sGGlhGvGasvvNalS~~f~V~v~r~gk~y~q~f~~G~~~~~~~~~~~~~~~~--~~~G 78 (555)
+|||+||||||||++ +|++||||||||+|||||||++|+|+|+|+|+.|+|+|++|+++.+++++ +.+ .++|
T Consensus 108 ~i~t~lhaggKfd~~--~ykvSgGlhGvG~svVNALS~~l~v~v~rdGk~~~q~f~~G~~~~~l~~i----g~~~~~~~G 181 (408)
T 3lnu_A 108 LILTRLHAGGKFNNR--NYTFSGGLHGVGVSVVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVV----GTVGKKNTG 181 (408)
T ss_dssp HHHHCC----------------------CHHHHHHTEEEEEEEEEETTEEEEEEEETTEECSCCEEE----EECCTTCCE
T ss_pred eEEEecccCCCcCCC--ceeecCCccccccceehhccCeEEEEEEECCEEEEEEECCCEECCCceEe----ccCcCCCCC
Confidence 469999999999988 99999999999999999999999999999999999999999999988765 333 4799
Q ss_pred eEEEEEeCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEeccccHHHHHHHHhcCCCCCCcee
Q 008738 79 TRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVV 158 (555)
Q Consensus 79 T~V~F~PD~~iF~~~~~~~~~~l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~~~Gl~dyv~~l~~~~~~~~~~i 158 (555)
|+|+||||+++|++ ..|++++|.+||+++|||||||+|+|+|+|.+ ..+.|+|++||++||++++.+++++++++
T Consensus 182 T~V~F~PD~~iF~~-~~f~~~~l~~rlrelA~Ln~Gv~I~l~der~~----~~~~f~yegGi~~yv~~l~~~k~~~~~~~ 256 (408)
T 3lnu_A 182 TRLRFWADPKYFDT-PKFNVRALRHLLRAKAVLCPGLTVKLHDEATG----EQDSWYFENGLRDYLKGEMAEHEMLPADL 256 (408)
T ss_dssp EEEEEEECGGGSSC-SCCCHHHHHHHHHHHHHHSTTCEEEEEETTTC----CEEEEECSSSHHHHHHHHTTTSCCEEEEE
T ss_pred cEEEEEECHHHhCC-CCcCHHHHHHHHHHHHhhcCCCEEEEEeccCC----ceeEEEcCchHHHHHHHHhcCCCcCCCCC
Confidence 99999999999974 57999999999999999999999999999965 36799999999999999999888777655
Q ss_pred EEEEeecc-eEEEEEEeecCCCCCceeeeeeCccccCCCCcchHHHHHHHHHHHHHHHHhcccCCCCCCCCCHhhhhccc
Q 008738 159 GFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGL 237 (555)
Q Consensus 159 ~~~~~~~~-~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~k~~~i~~~dIregL 237 (555)
++.++.++ +.|||||||+ ++|+++++||||||+|++||||++||++||+++||+|+++.+++|++ .+++++||||||
T Consensus 257 ~~~~~~~~~~~ve~Al~~~-~~~~e~~~SFvN~I~T~~GGTH~~gfr~altr~in~y~~~~~l~kk~-~~l~~~DiregL 334 (408)
T 3lnu_A 257 FVGSLKKDTEIVDWAAGWV-PEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRG-VKLAPEDVWDRV 334 (408)
T ss_dssp EEEEEECSSCEEEEEEEEC-SSSCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCTT-CCCCHHHHHTTE
T ss_pred eEeeEecCceeEEEEEEEc-CCCCeEEEEEeCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhCcccCC-CCCCHHHHhhCe
Confidence 55566666 8999999999 57999999999999999999999999999999999999999888875 899999999999
Q ss_pred EEEEEEeecCCCCCCccccccCChhhhhhhhhhhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008738 238 TCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQK 313 (555)
Q Consensus 238 ~~~vsv~i~nP~FegQTKekL~n~~v~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~~~ar~aakkar~~~~~k 313 (555)
++||||+|+||+|+||||++|+|++++.+|++++.+.|..||++||++++.|++|++.+++||+ ||||+++|||
T Consensus 335 ~aviSvkv~~PqFegQTK~kL~n~ev~~~V~~~v~~~l~~~l~enp~~ak~i~~k~i~aa~aR~--rkare~~rrK 408 (408)
T 3lnu_A 335 TFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFSLYLNQNVEIGEKIAQIAIDRASARL--KTEKQIVRKK 408 (408)
T ss_dssp EEEEEEECSSCCEESTTSCEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTC-------------
T ss_pred EEEEEEEcCCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999995 8999999875
No 7
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=1.6e-77 Score=634.38 Aligned_cols=298 Identities=41% Similarity=0.763 Sum_probs=278.6
Q ss_pred CEEeeecCCCCCCCCCCceeeccccCCcchhhhhhhcceeEEEEEeCCEEEEEEecCCcCCccceeeccCCCCCCCCceE
Q 008738 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTR 80 (555)
Q Consensus 1 ~v~t~lhaGgkF~~~~~~yk~sGGlhGvGasvvNalS~~f~V~v~r~gk~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~ 80 (555)
+|||+|||||||+++ .|++|||+||||+|+|||||++|+|+++|+|+.|.|+|++|+++.++.++ +...++||+
T Consensus 92 lv~~~lhagsKf~~~--~~~vSgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~l~~~----~~~~~~GT~ 165 (391)
T 1ei1_A 92 VIMTVLHAGGKFDDN--SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT----GETEKTGTM 165 (391)
T ss_dssp HHHHSTTEESCSSSS--SCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEE----EECSCCEEE
T ss_pred HhheeccccCCcCCC--cccccCCccccchHHHHHhcCeEEEEEEeCCcEEEEEEcCCcccccceec----cCcCCCccE
Confidence 378999999999988 99999999999999999999999999999999999999999998877654 334579999
Q ss_pred EEEEeCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEeccccHHHHHHHHhcCCCCCC-ceeE
Q 008738 81 IRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVG 159 (555)
Q Consensus 81 V~F~PD~~iF~~~~~~~~~~l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~~~Gl~dyv~~l~~~~~~~~-~~i~ 159 (555)
|+|+||+++|++...|+++.|.+||+++|||||||+|+|+|++.+ ..+.|+|++||.+|+.+++.++++++ ++++
T Consensus 166 V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~~~~~~~~~~i~ 241 (391)
T 1ei1_A 166 VRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDG----KEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 241 (391)
T ss_dssp EEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTC----CEEEECCCSHHHHHHHHHHHTSCBSSSCCEE
T ss_pred EEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEcCCCc----ceEEEEcCchHHHHHHHHcCCCcccccccEE
Confidence 999999999964157999999999999999999999999999853 35789999999999999999888887 6788
Q ss_pred EEEeecceEEEEEEeecCCCCCceeeeeeCccccCCCCcchHHHHHHHHHHHHHHHHhcccCCCCCCCCCHhhhhcccEE
Q 008738 160 FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 239 (555)
Q Consensus 160 ~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~k~~~i~~~dIregL~~ 239 (555)
++++.+++.||+|++|+ ++|+++++||||+|+|.+||||++||++||+++||+|+++.+++|+++.+++++||||||++
T Consensus 242 ~~~~~~~i~veva~~~~-~~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~l~k~~~~~~~~~dvregl~a 320 (391)
T 1ei1_A 242 FSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIA 320 (391)
T ss_dssp EEEEETTEEEEEEEEEB-SSCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCCCCCHHHHTTTEEE
T ss_pred EEEecCCEEEEEEEEcc-CCCCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhCcccccCCccCHHHHhhccEE
Confidence 88888899999999998 78989999999999999999999999999999999999998888877788999999999999
Q ss_pred EEEEeecCCCCCCccccccCChhhhhhhhhhhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008738 240 IISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 309 (555)
Q Consensus 240 ~vsv~i~nP~FegQTKekL~n~~v~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~~~ar~aakkar~~ 309 (555)
||||+|+||+|+||||+||+|++++.+|++++.+.|..||++||++++.|+++++.+++||+||||||++
T Consensus 321 visvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa~ar~aa~kare~ 390 (391)
T 1ei1_A 321 VVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 390 (391)
T ss_dssp EEEEECSSCCBSSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCcCCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999975
No 8
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00 E-value=2.7e-79 Score=672.90 Aligned_cols=229 Identities=28% Similarity=0.453 Sum_probs=212.7
Q ss_pred CCCCCCCCCCC---CCCCCCceeEEeeccCCCccccccCC---CCceeecccCcccccccccCHHHHhhCHhHHHHHHHh
Q 008738 319 SSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 392 (555)
Q Consensus 319 ~~lpgKL~dc~---~~~~~~~eL~lvEGDSA~gsa~~gRd---r~~qai~PLrGKiLNv~ka~~~ki~~N~Ei~~li~al 392 (555)
.++| ||+||+ +++|++|||||||||||||||+|||+ |+||||||||||||||++|+.++|++|+||++|++||
T Consensus 4 ~g~~-KL~Dc~~a~~k~~~~~el~lvEGDSAggsak~gr~~~gR~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~i~~al 82 (757)
T 3l4j_A 4 TNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIM 82 (757)
T ss_dssp CSCS-SCBCCTTSSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHT
T ss_pred CCCc-CccccccccCCCccceEEEEeecccchhhHhhcccccCcccccccccCCcccchhhccHHHhhcCHHHHHHHHHh
Confidence 3577 999996 79999999999999999999999884 8899999999999999999999999999999999999
Q ss_pred cCCccCCcCcccccceeeEEEeecCCCCCcchHHhHHHHHHHHHHHhhh-cCcEEEecCCeEEEE---eCCeEEEeeCHH
Q 008738 393 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVE---RGKQVQYCYDDA 468 (555)
Q Consensus 393 G~~~~~~~~~~~~LRYgkiiimtDaD~DG~HI~~Llltff~~~~p~Li~-~g~v~~~~tPl~kv~---~gk~~~~~~s~~ 468 (555)
||+++.+++|+++||||||||||||||||+||++|||||||||||+||+ +||||+|+||||||+ +|++++||||++
T Consensus 83 G~~~g~~~~~~~~lRY~kiiImtDaD~DG~HI~~Llltff~r~~p~Li~~~G~vy~~~~Pl~kv~~~~~gk~~~~~ys~~ 162 (757)
T 3l4j_A 83 GLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMP 162 (757)
T ss_dssp TCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHH
T ss_pred CCCcCcccccccccCcceEEEecCcccccccchhHHHHHHHHHhHHHhccCCEEEEecCceEEEeeccCCcceEEecCHH
Confidence 9999655579999999999999999999999999999999999999999 899999999999999 789999999999
Q ss_pred HHHHHHHhCCCCCCccceeeeccccCChhhHHhhh--cCCCceeEEeeccccHHHHHHHHHHhcCCCchHHHHHHHhccc
Q 008738 469 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETT--LNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAAN 546 (555)
Q Consensus 469 e~~~~~~~~~~~~~~~i~ryKGLGe~~~~~l~et~--~~p~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~Rk~~i~~~~~ 546 (555)
|+++|+++++..++|+||||||||||+|+|+|||| |||++|+|.+++++|++.++++|+. +++++||+||++|++
T Consensus 163 E~~~~~~~~~~~~~~~iqryKGLGem~~~ql~e~f~~m~~~~r~l~~~~~~d~~~~d~~f~~---~~~~~Rk~wi~~~~~ 239 (757)
T 3l4j_A 163 DYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSK---KKADDRKEWLRQYEP 239 (757)
T ss_dssp HHHHHHHHTGGGSCEEEEECCTTTTSCHHHHHHHHHTCTTTEEEECCCCTTHHHHHHHHHCT---TCHHHHHHHHHHCCT
T ss_pred HHHHHHHHhccCCCCccceecCcCcCCHHHHHHHhcCcCceeEEEEecCccHHHHHHHHhCc---CcchHHHHHHHhcCC
Confidence 99999998754467999999999999999999975 6688899999999998888888863 689999999999999
Q ss_pred cCCcC
Q 008738 547 LVNLD 551 (555)
Q Consensus 547 ~~~~~ 551 (555)
.+++|
T Consensus 240 ~~~ld 244 (757)
T 3l4j_A 240 GTVLD 244 (757)
T ss_dssp TCCCC
T ss_pred ccccc
Confidence 87665
No 9
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=100.00 E-value=9.7e-79 Score=669.04 Aligned_cols=221 Identities=34% Similarity=0.534 Sum_probs=158.3
Q ss_pred CCCCCCCCCC---CCCCCCCceeEEeeccCCC-----ccccccCCCCceeecccCcccccccccCHHHHhhCHhHHHHHH
Q 008738 319 SSLPGKLADC---SSTTPEESEIFIVEGDSAG-----GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 390 (555)
Q Consensus 319 ~~lpgKL~dc---~~~~~~~~eL~lvEGDSA~-----gsa~~gRdr~~qai~PLrGKiLNv~ka~~~ki~~N~Ei~~li~ 390 (555)
.++| ||+|| +++||++|||||||||||| |||+||||| |||||||||||||++|+.++|++|+||++|++
T Consensus 34 ~~lp-KL~Dan~a~~kd~~~~eLflvEGDSAg~~a~sGsak~gRdr--~ailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~ 110 (803)
T 3qx3_A 34 KGIP-KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIMENAEINNIIK 110 (803)
T ss_dssp CCCT-TCBCCTTTTSTTGGGCEEEEEEHHHHHHHHHTTSTTGGGTT--EEEEEECSSCCCCTTCCHHHHHHCHHHHHHHH
T ss_pred CCCC-ccccccccccCChhheEEEEecCCcchhhhhcccceecccc--cccccccCcchhhhhccHHHHhcCHHHHHHHH
Confidence 4578 99999 6899999999999999999 999999999 89999999999999999999999999999999
Q ss_pred HhcCCccCC---cCcccccceeeEEEeecCCCCCcchHHhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEeeCH
Q 008738 391 ALGLGVKGE---DFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 467 (555)
Q Consensus 391 alG~~~~~~---~~~~~~LRYgkiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~tPl~kv~~gk~~~~~~s~ 467 (555)
|||||++.+ .+|+++||||||||||||||||+||++|||||||||||+||+.||||+|+||||||++||++.||||+
T Consensus 111 alG~g~g~~~~~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~~ys~ 190 (803)
T 3qx3_A 111 IVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSI 190 (803)
T ss_dssp HHTCCTTCCCCSTTGGGGCSCSEEEEECCSSHHHHHHHHHHHHHHHHHCGGGGGTTCEEEECC-----------------
T ss_pred HhCCCcCccccccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCeEEEecCceEEEecCCeeEEEecH
Confidence 999999543 24899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCccceeeeccccCChhhHHhhhcCCC-ceeEEeec-cccHHHHHHHHHHhcCCCchHHHHHHHhcc
Q 008738 468 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPE-QRMLKQLV-IEDAAEANVVFSSLMGARVDTRKELIQNAA 545 (555)
Q Consensus 468 ~e~~~~~~~~~~~~~~~i~ryKGLGe~~~~~l~et~~~p~-~r~l~~v~-~~d~~~~~~~f~~lmg~~~~~Rk~~i~~~~ 545 (555)
+|+++|+++++..++|+||||||||||+|+|+|||||||. +|.+.+++ .+|.+.++++|+ |+++++||+||++|+
T Consensus 191 ~e~~~~~~~~~~~~~~~iqryKGLGem~~~el~ettmd~~~~r~~~~~~~~~d~~~~d~~F~---k~~~~~RK~wi~~~~ 267 (803)
T 3qx3_A 191 PEFDEWKKHIENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFS---KKKIDDRKEWLTNFM 267 (803)
T ss_dssp -----------------------------CHHHHHHHTHHHHEEEEECCSHHHHHHHHHHHC---GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcccccccccCCCCHHHHHHHhcCcccceEEEEeCCcchHHHHHHHhc---CCChHHHHHHHHHhh
Confidence 9999999887555679999999999999999999999986 56666665 345555555554 568999999999998
No 10
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=1.1e-75 Score=620.45 Aligned_cols=294 Identities=29% Similarity=0.495 Sum_probs=271.6
Q ss_pred EEeeecCCCCCCCCCCceeeccccCCcchhhhhhhcceeEEEEEeCCEEEEEEecCCcCCccceeeccCCCCCC--CCce
Q 008738 2 IVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKD--RQGT 79 (555)
Q Consensus 2 v~t~lhaGgkF~~~~~~yk~sGGlhGvGasvvNalS~~f~V~v~r~gk~y~q~f~~G~~~~~~~~~~~~~~~~~--~~GT 79 (555)
|||+|||||||+++ .|++|||+||||+|+|||||++|+|+++|+|+.|.|+|++|+++.++..+ +... ++||
T Consensus 90 v~~~lhagsKf~~~--~~~~sgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~~~~~----g~~~~~~~GT 163 (390)
T 1s16_A 90 ILCRLHAGGKFSNK--NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVV----GTCGKRNTGT 163 (390)
T ss_dssp HHHCTTEESCSSSS--SCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEE----EECCTTCCEE
T ss_pred eeeeecccCCcCCC--cccccCCccccchHHHHHhhcccEEEEEECCcEEEEEEeCCcccccceec----ccccCCCCce
Confidence 68999999999988 99999999999999999999999999999999999999999988777654 3333 6999
Q ss_pred EEEEEeCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEeccccHHHHHHHHhcCCCCCC-cee
Q 008738 80 RIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVV 158 (555)
Q Consensus 80 ~V~F~PD~~iF~~~~~~~~~~l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~~~Gl~dyv~~l~~~~~~~~-~~i 158 (555)
+|+|+||+++|+ +..|+++.|.+||+++|+|||||+|+|+|++.+ ..+.|+|++||.+|+.+++.++++++ +++
T Consensus 164 ~V~f~Pd~~~F~-~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~~~~~~~~~~i 238 (390)
T 1s16_A 164 SVHFWPDETFFD-SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN----TEQRWCYQDGLNDYLAEAVNGLPTLPEKPF 238 (390)
T ss_dssp EEEEEECGGGSS-CCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEECCSSCHHHHHHHHHTTSCCEEEEEE
T ss_pred EEEEEECccccC-cccccHHHHHHHHHHHHhcCCCcEEEEEeCCCc----eeEEEEcCCcHHHHHHHHhCCCcccCCCcE
Confidence 999999999996 458999999999999999999999999999843 35789999999999999998877777 678
Q ss_pred EEEEeecceEEEEEEee-cCCCCCceeeeeeCccccCCCCcchHHHHHHHHHHHHHHHHhcccCCCCCCCCCHhhhhccc
Q 008738 159 GFRKDVDGITIDLALQW-CSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGL 237 (555)
Q Consensus 159 ~~~~~~~~~~veval~~-s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~k~~~i~~~dIregL 237 (555)
+++++.+++.||+|++| + ++|+++++||||+|+|.+||||++||++||+++||+|+++++++| ++.+++++||||||
T Consensus 239 ~~~~~~~~~~ve~a~~~~~-~~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k-~~~~l~~~dvregl 316 (390)
T 1s16_A 239 IGNFAGDTEAVDWALLWLP-EGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRC 316 (390)
T ss_dssp EEEEECSSEEEEEEEEECT-TCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSC-TTCCCCHHHHHTTE
T ss_pred EEEEeeCCEEEEEEEEecc-CCCCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCc-cCCccCHHHHhhcc
Confidence 88888889999999999 6 788899999999999999999999999999999999999999888 77899999999999
Q ss_pred EEEEEEeecCCCCCCccccccCChhhhhhhhhhhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008738 238 TCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARD 308 (555)
Q Consensus 238 ~~~vsv~i~nP~FegQTKekL~n~~v~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~~~ar~aakkar~ 308 (555)
++||||+++||+|+||||++|+|++++.+|++++.+.|..||++||++++.|+++++.+++||+||+|||+
T Consensus 317 ~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa~aR~aa~kare 387 (390)
T 1s16_A 317 AYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV 387 (390)
T ss_dssp EEEEEEEESSCCBSSTTCCCBCCTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred EEEEEeecCCCCccccccchhcChhHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998
No 11
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00 E-value=3e-75 Score=640.53 Aligned_cols=198 Identities=60% Similarity=0.990 Sum_probs=186.0
Q ss_pred cCCCCCCCCCCCCCCCCCceeEEeeccCCCccccccCCCCceeecccCcccccccccCHHHHhhCHhHHHHHHHhcCCcc
Q 008738 318 SSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK 397 (555)
Q Consensus 318 ~~~lpgKL~dc~~~~~~~~eL~lvEGDSA~gsa~~gRdr~~qai~PLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~~~~ 397 (555)
...|||||+||++++|++|||||||||||||||+|||||+|||||||||||||||+|+.++|++|+||++|++||||++
T Consensus 3 ~~~lpgkl~dc~~~~~~~~eL~lvEGDSA~Gsak~gRd~~~qai~PLrGKiLNv~~a~~~~i~~n~Ei~~i~~alG~~~- 81 (692)
T 2xcs_B 3 VASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI- 81 (692)
T ss_dssp ------CCBCCSCCCTTTCEEEEESSHHHHHHHHHHSCTTTEEEEECCSSCCCTTTSCHHHHHTCHHHHHHHHHHCSCC-
T ss_pred CCCCCchhhcCCCCCcccceEEEecCCcccCcccccccccccccccccCcccchhhCcHHHhhccHHHHHHHHHhCCCc-
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccceeeEEEeecCCCCCcchHHhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEeeCHHHHHHHHHhC
Q 008738 398 GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSF 477 (555)
Q Consensus 398 ~~~~~~~~LRYgkiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~tPl~kv~~gk~~~~~~s~~e~~~~~~~~ 477 (555)
+.+||+++||||||||||||||||+||++|||||||||||+||++||||+++||+
T Consensus 82 g~~~~~~~lrY~kiiImTDaD~DGsHI~~Llltff~r~~~~Li~~g~vyia~pP~------------------------- 136 (692)
T 2xcs_B 82 GGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPT------------------------- 136 (692)
T ss_dssp GGGCCGGGCSCSEEEECCCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEECCCCS-------------------------
T ss_pred CccccccccccceEEEeecCCCCcchhhhHHHHHHHHhChHHhhcCeeEEecCch-------------------------
Confidence 5679999999999999999999999999999999999999999999999999994
Q ss_pred CCCCCccceeeeccccCChhhHHhhhcCCCceeEEeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccCCc
Q 008738 478 PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNL 550 (555)
Q Consensus 478 ~~~~~~~i~ryKGLGe~~~~~l~et~~~p~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~Rk~~i~~~~~~~~~ 550 (555)
||||||||+|+|+|||||||++|++.+|+++|+++++++|++|||+++++||+||++|++..++
T Consensus 137 ---------~yKGLGem~~~ql~et~m~p~~r~l~~v~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~~~~~~l 200 (692)
T 2xcs_B 137 ---------GYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANL 200 (692)
T ss_dssp ---------SCSSGGGSCHHHHHHHHTCTTTCCCEEEECCCHHHHHHHHHHHHSSCHHHHHHHHHHHCCCCC-
T ss_pred ---------hhcccccCCHHHHHHHhcCccceeEEEEecCchhhHHHHHHHHcCCCchHHHHHHHhcCCcccc
Confidence 7999999999999999999999999999999998999999999999999999999999986433
No 12
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=7.6e-72 Score=591.94 Aligned_cols=296 Identities=38% Similarity=0.607 Sum_probs=276.7
Q ss_pred EEeeecCCCCCCCCCCceeeccccCCcchhhhhhhcceeEEEEEeCCEEEEEEecCCcCCccceeeccCCCCC--CCCce
Q 008738 2 IVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSK--DRQGT 79 (555)
Q Consensus 2 v~t~lhaGgkF~~~~~~yk~sGGlhGvGasvvNalS~~f~V~v~r~gk~y~q~f~~G~~~~~~~~~~~~~~~~--~~~GT 79 (555)
||+.|||||||+++ .|++|||+||+|+++||++|++|+|+++++|+.|.|+|++|+++.++..+ +.. .++||
T Consensus 91 if~~~~~~~kf~~~--~~~~s~G~~G~Gls~v~als~~~~v~t~~~g~~~~~~~~~G~~~~~~~~~----~~~~~~~~GT 164 (390)
T 1kij_A 91 IYNTLHSGGKFEQG--AYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVV----GEAPRGKTGT 164 (390)
T ss_dssp HHHSSCEESGGGGS--SCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEE----EECGGGCCEE
T ss_pred heeeeeecccccCc--cccccCCCCCcceeeecccccceEEEEecCCcEEEEEEcCCcccccceee----ccccCCCCCc
Confidence 68999999999887 89999999999999999999999999999999999999999987666544 222 57999
Q ss_pred EEEEEeCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEeccccHHHHHHHHhcCCCCCC-cee
Q 008738 80 RIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVV 158 (555)
Q Consensus 80 ~V~F~PD~~iF~~~~~~~~~~l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~~~Gl~dyv~~l~~~~~~~~-~~i 158 (555)
+|+|+||+++|+ +..|+++.|.+||+++|+|||||+|+|+|++.+ ..+.|+|++||.+|+.+++.++++++ +++
T Consensus 165 ~V~f~Pd~~~F~-~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~----~~~~f~~~~Gl~~~v~~l~~~~~~~~~~~i 239 (390)
T 1kij_A 165 RVTFKPDPEIFG-NLRFDPSKIRARLREVAYLVAGLKLVFQDRQHG----KEEVFLDKGGVASFAKALAEGEDLLYEKPF 239 (390)
T ss_dssp EEEEEECHHHHT-TCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGT----EEEEECCTTHHHHHHHHHTTTSCBSCSSCE
T ss_pred EEEEEEChHHhC-CccccHHHHHHHHHHhcCcCCCcEEEEEeCCCc----ceEEEEcCCcHHHHHHHHhCCCCcCCCCcE
Confidence 999999999996 457999999999999999999999999999843 35789999999999999998887787 678
Q ss_pred EEEEeecceEEEEEEeecCCCCCceeeeeeCccccCCCCcchHHHHHHHHHHHHHHHHhcccCCCCCCCCCHhhhhcccE
Q 008738 159 GFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLT 238 (555)
Q Consensus 159 ~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~k~~~i~~~dIregL~ 238 (555)
+++++.++++||+|++|+ ++|+++++||||+|+|.+||||++||++||++++|+|+++++++|+++.+++++|||+||+
T Consensus 240 ~~~~~~~~i~ve~a~~~~-~~~~~~~~sFvN~i~t~~GGTH~~g~~~alt~~i~~~~~~~~l~k~~~~~l~~~dvregl~ 318 (390)
T 1kij_A 240 LIRGTHGEVEVEVGFLHT-QGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDDLLEGLY 318 (390)
T ss_dssp EEEEEETTEEEEEEEEEB-SSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCSSSCCCCTTTTTTTEE
T ss_pred EEEeecCCeEEEEEEEec-CCCCceEEEEEcCeeeCCCCchhHHHHHHHHHHHHHHHHHhCccccccCCcCHHHHhhhcE
Confidence 888888899999999998 6888999999999999999999999999999999999999999888778999999999999
Q ss_pred EEEEEeecCCCCCCccccccCChhhhhhhhhhhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008738 239 CIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 309 (555)
Q Consensus 239 ~~vsv~i~nP~FegQTKekL~n~~v~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~~~ar~aakkar~~ 309 (555)
+||||+++||+|+||||++|+|++++.+|++++.+.|..||++||+.++.|+++++.+++||+||+|||++
T Consensus 319 avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~~aR~aa~kare~ 389 (390)
T 1kij_A 319 AVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKAREL 389 (390)
T ss_dssp EEEEEECSSCCBCSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985
No 13
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=100.00 E-value=2.9e-71 Score=589.13 Aligned_cols=272 Identities=18% Similarity=0.261 Sum_probs=219.3
Q ss_pred CEEeeecCCCCCCCCCCceeeccccCCcchhhhhhhcceeEEEEE--eCCEEEEEEecCCc--CCccceeeccCCCCCCC
Q 008738 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW--RDGMEYHQKYSRGK--PVTTLTCHVLPVDSKDR 76 (555)
Q Consensus 1 ~v~t~lhaGgkF~~~~~~yk~sGGlhGvGasvvNalS~~f~V~v~--r~gk~y~q~f~~G~--~~~~~~~~~~~~~~~~~ 76 (555)
+|||+||||||||++ +||+||||||||+|||||||+||+|+|+ |+|+.|+|+|++|+ ++.| . +. ...+.+
T Consensus 124 ~v~t~LhaGgKfd~~--~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p-~-i~--~~~~~~ 197 (418)
T 1pvg_A 124 MIFGHLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPP-K-IT--SYKKGP 197 (418)
T ss_dssp HHHHSSSEESCCCTT--SCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCC-E-EE--ECCSSC
T ss_pred EEEEEEecccccCCC--ceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCC-e-ec--ccCCCC
Confidence 479999999999998 9999999999999999999999999999 59999999999996 5555 2 21 111257
Q ss_pred CceEEEEEeCcccccccccCCHHH---HHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEeccccHHHHHHH----Hhc
Q 008738 77 QGTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW----LNT 149 (555)
Q Consensus 77 ~GT~V~F~PD~~iF~~~~~~~~~~---l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~~~Gl~dyv~~----l~~ 149 (555)
+||+|+||||++||++ ..|++++ |.+|||++|||||||+|+|+|+|.+ .+|+.+|+++ ++.
T Consensus 198 tGT~V~F~PD~~iF~~-~~f~~d~l~~l~~RlrelA~Ln~Gl~I~l~der~~-----------~~g~~~~v~~y~~~l~~ 265 (418)
T 1pvg_A 198 SYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNGKSLK-----------IRNFKNYVELYLKSLEK 265 (418)
T ss_dssp CEEEEEEEECGGGGTC-SSCCHHHHHHHHHHHHHHHHHSTTCEEEETTEECC-----------CCSHHHHHHTTTTTC--
T ss_pred CceEEEEEEChHHcCC-cccCHHHHHHHHHHHHHHHhcCCCCEEEEeccccc-----------cccHHHHHHHHHHhhhc
Confidence 9999999999999975 5799998 6899999999999999999999843 1478888875 455
Q ss_pred CCC---------CCC-ceeEEEEeecceEEEEEEeecCCCCCceeeeeeCccccCCCCcchHHHHHHHHHHHHHHHHhcc
Q 008738 150 DKK---------PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSK 219 (555)
Q Consensus 150 ~~~---------~~~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~ 219 (555)
+++ +++ +++++.++.+ +||||+||+ +++ ++++||||||+|++||||++||+++|++++++|+++++
T Consensus 266 ~k~~~~~~~~~~~~~~~~i~~~~~~~--~vevA~~~~-~~~-~~~~SFvN~I~T~~GGTH~~g~~~al~~~i~~~~~k~~ 341 (418)
T 1pvg_A 266 KRQLDNGEDGAAKSDIPTILYERINN--RWEVAFAVS-DIS-FQQISFVNSIATTMGGTHVNYITDQIVKKISEILKKKK 341 (418)
T ss_dssp ---------------CCSCEEEEEET--TEEEEEEEC-SSS-CEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHCC--
T ss_pred ccccccccccccCCCCCCEEEEEecc--eEEEEEEEc-CCC-ceEEEEeCceeCCCCCcHHHHHHHHHHHHHHHHHHhcc
Confidence 554 566 5777776544 589999999 455 66999999999999999999999999999999987532
Q ss_pred cCCCCCCCCCHhhhhcccEEEEEEeecCCCCCCccccccCChhhhhhhhhhhHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 008738 220 TVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKA 299 (555)
Q Consensus 220 ~~k~k~~~i~~~dIregL~~~vsv~i~nP~FegQTKekL~n~~v~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~~~a 299 (555)
+.+++++||||||++||||+++||+|+||||+||+|++.+..+++++.+.|..||++ +.|+++++.+++|
T Consensus 342 -----~~~l~g~Dvregl~aviSvkv~~PqFegQTK~kL~~~~~~~v~~~~v~e~l~~~l~~-----~~iv~ki~~~a~a 411 (418)
T 1pvg_A 342 -----KKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMK-----TDLATRMFEIADA 411 (418)
T ss_dssp --------CCHHHHHTTEEEEEEECCSSCCBSSTTCCSBCCCGGGSSSCCCCCHHHHHHHTT-----SHHHHHHHHHHHC
T ss_pred -----cCCCCHHHHhhCeEEEEEEecCCCcccCccchhhcCcccccccccchhHHHHHHHhh-----hHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999777544447999999999985 5556666666666
Q ss_pred HHHHH
Q 008738 300 ALAAK 304 (555)
Q Consensus 300 r~aak 304 (555)
|+||+
T Consensus 412 r~aa~ 416 (418)
T 1pvg_A 412 NEENA 416 (418)
T ss_dssp -----
T ss_pred HHHhh
Confidence 66554
No 14
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=100.00 E-value=2.7e-69 Score=571.57 Aligned_cols=275 Identities=18% Similarity=0.254 Sum_probs=225.5
Q ss_pred CEEeeecCCCCCCCCCCceeeccccCCcchhhhhhhcceeEEEEEe--CCEEEEEEecCCcCCccceeeccCCCC-CCCC
Q 008738 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWR--DGMEYHQKYSRGKPVTTLTCHVLPVDS-KDRQ 77 (555)
Q Consensus 1 ~v~t~lhaGgkF~~~~~~yk~sGGlhGvGasvvNalS~~f~V~v~r--~gk~y~q~f~~G~~~~~~~~~~~~~~~-~~~~ 77 (555)
+|||+|||||||+++ .|++||||||||+|+|||||++|+|+++| +|+.|.|+|++|+++.+++.+ +. ..++
T Consensus 112 ~v~t~lhagsKf~~~--~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~i----g~~~~~~ 185 (400)
T 1zxm_A 112 LIFGQLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMEL----KPFNGED 185 (400)
T ss_dssp HHHHSSSEESCCCGG--GCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEE----EECCSCC
T ss_pred heeeeecccCCCCCC--cccccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCccee----ccCCCCC
Confidence 478999999999988 99999999999999999999999999998 599999999999988766544 22 2468
Q ss_pred ceEEEEEeCcccccccccCCHHH---HHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEeccccHHHHHHHHhcCCCCC
Q 008738 78 GTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL 154 (555)
Q Consensus 78 GT~V~F~PD~~iF~~~~~~~~~~---l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~~~Gl~dyv~~l~~~~~~~ 154 (555)
||+|+|+||+++|+ ...|++++ |.+||+++|+|||||+|+|+|+|.+ ++||++||++++.+++++
T Consensus 186 GT~V~F~Pd~~iF~-~~ef~~~~~~~l~~rlrelA~lnpgv~i~l~der~~-----------~~Gi~~yv~~l~~~~~~~ 253 (400)
T 1zxm_A 186 YTCITFQPDLSKFK-MQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLP-----------VKGFRSYVDMYLKDKLDE 253 (400)
T ss_dssp EEEEEEEECGGGGT-CSSCCHHHHHHHHHHHHHHHHHSSSCEEEETTEECC-----------CCSHHHHHHHHHTTCBCS
T ss_pred ccEEEEEEChHHhC-ceeecHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC-----------CCCHHHHHHHHhcCCCcc
Confidence 99999999999996 45899998 7899999999999999999999843 379999999999988777
Q ss_pred Cc-eeEEEEeecceEEEEEEeecCCCCCceeeeeeCccccCCCCcchHHHHHHHHHHHHHHHHhcccCCCCCCCCCHhhh
Q 008738 155 HD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 233 (555)
Q Consensus 155 ~~-~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~k~~~i~~~dI 233 (555)
++ ++.+..+.++++||||+||++++|+ ++||||||+|++||||++||++||+++||+|+++++ +++.+++++||
T Consensus 254 ~~~~~~~~~~~~~~~~eva~~~~~~~~~--~~sfvN~I~T~~GGTH~~gfr~altr~i~~y~~k~~---k~~~~l~~~Dv 328 (400)
T 1zxm_A 254 TGNSLKVIHEQVNHRWEVCLTMSEKGFQ--QISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKN---KGGVAVKAHQV 328 (400)
T ss_dssp SSSBCCCEEEEEETTEEEEEEECSSSCE--EEEEETTEECTTEEHHHHHHHHHHHHHHHHHHTTCC-------CCCHHHH
T ss_pred CCCCcceEEeecCcEEEEEEEEcCCCce--EEEEeCCccCCCCCcHHHHHHHHHHHHHHHHHHHhc---ccCCCcCHHHH
Confidence 63 3322234456789999999954774 799999999999999999999999999999998762 34568999999
Q ss_pred hcccEEEEEEeecCCCCCCccccccCChhhhhhhhh-hhHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 008738 234 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ-SVQEYLTEYLELHPDVLDSILSKSLSALKAA 300 (555)
Q Consensus 234 regL~~~vsv~i~nP~FegQTKekL~n~~v~~~v~~-~v~~~l~~~l~~n~~~~~~i~~~~~~~~~ar 300 (555)
||||++||||+++||+|+||||+||+|+++ .++.+ ++.+.|..|| .||++++.|+++++.+++++
T Consensus 329 regl~avisvkv~~PqFegQTK~kL~~~~~-~~v~~~~~~~~~~~~l-~~~~~~~~i~~~a~~~~~~~ 394 (400)
T 1zxm_A 329 KNHMWIFVNALIENPTFDSQTKENMTLQPK-SFGSTCQLSEKFIKAA-IGCGIVESILNWVKFKAQVQ 394 (400)
T ss_dssp HTTEEEEEEECCSSCCBSSTTCCEECCCGG-GSSSCCCCCHHHHHHH-TTC-----------------
T ss_pred hhCeEEEEEEecCCCCcCcccchhhcCccc-ccccccchhHHHHHHH-cChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987 77777 9999999999 89999999999998766543
No 15
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=100.00 E-value=1.2e-64 Score=532.22 Aligned_cols=275 Identities=28% Similarity=0.518 Sum_probs=246.1
Q ss_pred CEEeeecCCCCCCCCC--CceeeccccCCcchhhhhhhcceeEEEEEeCCEEEEEEecCCcC------CccceeeccCCC
Q 008738 1 MIVTVLHAGGKFGGSS--SGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP------VTTLTCHVLPVD 72 (555)
Q Consensus 1 ~v~t~lhaGgkF~~~~--~~yk~sGGlhGvGasvvNalS~~f~V~v~r~gk~y~q~f~~G~~------~~~~~~~~~~~~ 72 (555)
+|| +|||||||++.+ +.|++|| |+|+|||||++|+|+++|+|+.|+|+|++|++ +.++..+ +
T Consensus 77 ~v~-~lhagsKf~~~~~~~~y~vsG-----Gls~vnalSs~l~v~t~r~g~~~~~~~~~G~~~~~~~~~~~l~~~----g 146 (369)
T 3cwv_A 77 NLV-RVATGAGFLGRPPGDGWGWDS-----MLVVSLALSSRYQVDIWADGRQWRVMGEHGHPQGEGAAVTPMEPM----P 146 (369)
T ss_dssp HHH-HHHTTTTGGGSSCCCSTTTTS-----SHHHHHHTEEEEEEEEEETTEEEEEEEETTEECTTCEEESSCCCC----S
T ss_pred Hee-eeecCCCcCCCcccccccccC-----HHHHHHHhhceEEEEEEECCCEEEEEEeCCcccccccccCCceEe----c
Confidence 367 899999999821 2899995 89999999999999999999999999999998 6655433 4
Q ss_pred CCCCCceEEEEEeCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEeccccHHHHHHHHhcCCC
Q 008738 73 SKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 152 (555)
Q Consensus 73 ~~~~~GT~V~F~PD~~iF~~~~~~~~~~l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~~~Gl~dyv~~l~~~~~ 152 (555)
...++||+|+|+||+++|+ +..++++.|.+||+++|+|||||+|+|+|++.+ ..+.|+|++||++|+.+++.+++
T Consensus 147 ~~~~~GT~V~f~Pd~~~F~-~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~~~~ 221 (369)
T 3cwv_A 147 VSAERGVRVHFVPDATIFE-VLAFDRARLSRRCNELAALAPGLRVSFADLQRG----ERTLWHLPGGVAQWAHVLTEARP 221 (369)
T ss_dssp SCCSEEEEEEEEECTTTCS-CCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEEECTTHHHHHHHHHHTTSC
T ss_pred ccCCCCCEEEEEECHHHhC-CccccHHHHHHHHHHHcCcCCCcEEEEEeCCCC----eeEEEEeCchHHHHHHHHhcCCc
Confidence 4457999999999999996 467999999999999999999999999999843 35789999999999999998887
Q ss_pred CCC-ceeEEEEeecceEEEEEEeecCCCCCceeeeeeCccccCCCCcchHHHHHHHHHHHHHHHHhcccCCCCCCCCCHh
Q 008738 153 PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 231 (555)
Q Consensus 153 ~~~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~k~~~i~~~ 231 (555)
+++ ++++++++.++++||+|++|+ ++|++.++||||+|+|.+||||++||++||++++++|++ +++.+++++
T Consensus 222 ~~~~~~i~~~~~~~~i~ve~a~~~~-~~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k------~~~~~l~~~ 294 (369)
T 3cwv_A 222 QLHPEPVVFDFTWDGLRVQCALQWC-EDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSG------ETRGAFPWA 294 (369)
T ss_dssp BSSSSCEEEEEEETTEEEEEEEEEB-SSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHT------CCGGGSCHH
T ss_pred ccCCCcEEEEEecCCEEEEEEEEec-CCCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHHHHHh------hcCCCcCHH
Confidence 777 678888888899999999999 689999999999999999999999999999999999993 234579999
Q ss_pred hhhcccEEEEEEeecCCC--CCCccccccCChhhhhhhhhhhHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 008738 232 HVREGLTCIISVRVPNPE--FEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 297 (555)
Q Consensus 232 dIregL~~~vsv~i~nP~--FegQTKekL~n~~v~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~~ 297 (555)
||||||++||||+++||+ |+||||++|+|++++.+|++++.+.|..||++||++++.|++|++.++
T Consensus 295 dvregl~avisvk~~~P~~~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~ 362 (369)
T 3cwv_A 295 RVAQGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVTPALLARRTSGSE 362 (369)
T ss_dssp HHTTTEEEEEEEECCGGGCCBSSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTCTTHHHHHTTC-----
T ss_pred HHhhccEEEEEeccCCcchhccccccchhcCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 999999999999999999 999999999999999999999999999999999999999999998764
No 16
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=100.00 E-value=2.8e-36 Score=295.28 Aligned_cols=128 Identities=45% Similarity=0.821 Sum_probs=106.9
Q ss_pred CEEeeecCCCCCCCCCCceeeccccCCcchhhhhhhcceeEEEEEeCCEEEEEEecCCcCCccceeeccCCCCCCCCceE
Q 008738 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTR 80 (555)
Q Consensus 1 ~v~t~lhaGgkF~~~~~~yk~sGGlhGvGasvvNalS~~f~V~v~r~gk~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~ 80 (555)
+|||+|||||||+++ +|++||||||||+|||||||++|+|+|+|+|+.|+|+|++|+++.+++.+ +.+.++||+
T Consensus 93 ~i~t~lhag~Kfd~~--~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g~~~~~~f~~G~~~~~l~~~----g~~~~~GT~ 166 (220)
T 4duh_A 93 VIMTVLHAGGKFDDN--SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT----GETEKTGTM 166 (220)
T ss_dssp HHHHSTTCSSCCCTT--C--------CCCHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSSCEEE----EECSCCEEE
T ss_pred heeeecccCCCcCCC--ccccccCccceecchhcccccceEEEEEECCEEEEEEecCCcCcCCceec----cccCCCCcE
Confidence 368999999999988 99999999999999999999999999999999999999999999888755 445689999
Q ss_pred EEEEeCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEeccc
Q 008738 81 IRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 138 (555)
Q Consensus 81 V~F~PD~~iF~~~~~~~~~~l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~~~ 138 (555)
|+|+||+++|.++..|++++|.+||+++|||||||+|+|+|+|.+ +.++|||++
T Consensus 167 V~F~Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~----~~~~~~y~g 220 (220)
T 4duh_A 167 VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG----KEDHFHYEG 220 (220)
T ss_dssp EEEEECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEETTTC----CEEEEC---
T ss_pred EEEEECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEccCCC----cEEEEEcCC
Confidence 999999999975437999999999999999999999999999954 467899975
No 17
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=100.00 E-value=2.4e-36 Score=296.52 Aligned_cols=127 Identities=49% Similarity=0.818 Sum_probs=102.3
Q ss_pred CEEeeecCCCCCCCCCCceeeccccCCcchhhhhhhcceeEEEEEeCCEEEEEEecCC-cCCccceeeccCCCCC--CCC
Q 008738 1 MIVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVLPVDSK--DRQ 77 (555)
Q Consensus 1 ~v~t~lhaGgkF~~~~~~yk~sGGlhGvGasvvNalS~~f~V~v~r~gk~y~q~f~~G-~~~~~~~~~~~~~~~~--~~~ 77 (555)
+|||+|||||||+++ +|++||||||||+|||||||++|+|+|+|+|+.|.|+|++| +++.+++.+ +.+ .++
T Consensus 97 ~v~t~lhag~Kfd~~--~yk~SgGlhGvG~svvNALS~~l~v~v~r~g~~~~q~f~~Gg~~~~~l~~i----g~~~~~~~ 170 (226)
T 4emv_A 97 VIFTILHAGGKFGQG--GYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKI----GTALKSKT 170 (226)
T ss_dssp HHHHCBC----------------CGGGCCHHHHHHTEEEEEEEEEETTEEEEEEEETTTEESSCSEEE----EECCTTCC
T ss_pred eeEEeecccCccCcc--ceEeccccccccchhhhhcccceEEEEEeCCcEEEEEECCCCEEcCCceEe----cccCCCCC
Confidence 368999999999998 99999999999999999999999999999999999999999 898888755 333 679
Q ss_pred ceEEEEEeCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEeccc
Q 008738 78 GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 138 (555)
Q Consensus 78 GT~V~F~PD~~iF~~~~~~~~~~l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~~~ 138 (555)
||+|+||||+++|++ ..|++++|.+||+++|||||||+|+|+|+|.+ +.++|||++
T Consensus 171 GT~V~F~PD~~iF~~-~~~~~~~l~~rlrelA~ln~gv~i~l~der~~----~~~~f~y~g 226 (226)
T 4emv_A 171 GTKVTFMPDATIFST-TDFKYNTISERLNESAFLLKNVTLSLTDKRTD----EAIEFHYEN 226 (226)
T ss_dssp EEEEEEEECTTTCSC-CCCCHHHHHHHHHHHHHHHCSCEEEEEETTTC----CEEEECCCC
T ss_pred CeEEEEEECHHHcCC-CCcCHHHHHHHHHHHhhcCCCCEEEEEecCCC----cEEEEEcCC
Confidence 999999999999974 57999999999999999999999999999964 357899975
No 18
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.95 E-value=4.4e-29 Score=241.58 Aligned_cols=124 Identities=38% Similarity=0.699 Sum_probs=91.5
Q ss_pred EEeeecCCCCCCCCCCceeeccccCCcchhhhhhhcceeEEEEEeCCEEEEEEecCCcCCccceeeccCCCCC--CCCce
Q 008738 2 IVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSK--DRQGT 79 (555)
Q Consensus 2 v~t~lhaGgkF~~~~~~yk~sGGlhGvGasvvNalS~~f~V~v~r~gk~y~q~f~~G~~~~~~~~~~~~~~~~--~~~GT 79 (555)
|||.|||||||+++ .|++|||+||+|++++||||++|+|+++++|+.|.|+|++|+++.+++.+ +.. .++||
T Consensus 76 i~~~~hatsK~~~~--~~~~s~GfrGeglssinalS~~l~v~t~~~g~~~~~~~~~G~~~~~~~~~----g~~~~~~~GT 149 (201)
T 3fv5_A 76 ILCRLHAGGKFSNK--NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVV----GTCGKRNTGT 149 (201)
T ss_dssp HHHCC-----------------------CHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEE----EECCTTCCEE
T ss_pred eeeeeccccCcCCC--cccccCcccceecchhhcccceEEEEEEecCceEEEEEeCCEEcccceec----ccCCCCCCCe
Confidence 48999999999987 99999999999999999999999999999999999999999998777644 222 57999
Q ss_pred EEEEEeCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEec
Q 008738 80 RIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF 136 (555)
Q Consensus 80 ~V~F~PD~~iF~~~~~~~~~~l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~ 136 (555)
+|+|+||+++|+ +..++++.|.+||+++|+|||||+|+|+++|.+ +.+.|||
T Consensus 150 ~V~f~Pdr~~F~-~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r~~----~~~~~~y 201 (201)
T 3fv5_A 150 SVHFWPDETFFD-SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN----TEQRWCY 201 (201)
T ss_dssp EEEEEECGGGSS-CCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEECC
T ss_pred EEEEEECHHHcC-CCccCHHHHHHHHHHHHHhCCCCEEEEEecCCC----cEEEEEC
Confidence 999999999996 458999999999999999999999999999965 4567876
No 19
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.93 E-value=3.4e-28 Score=269.66 Aligned_cols=227 Identities=15% Similarity=0.147 Sum_probs=171.4
Q ss_pred EEeeecCCCCCCCCCCceeeccccCCcchhhhhhhccee-----EEEEEeCC--EEEEEEe----cCCcCCccceeeccC
Q 008738 2 IVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESL-----EVTVWRDG--MEYHQKY----SRGKPVTTLTCHVLP 70 (555)
Q Consensus 2 v~t~lhaGgkF~~~~~~yk~sGGlhGvGasvvNalS~~f-----~V~v~r~g--k~y~q~f----~~G~~~~~~~~~~~~ 70 (555)
||+.+|||+||.. ++.|+|.||+|++++|++|+.+ +|++.++| ..++++| ++|++.......
T Consensus 93 iF~~~~atskf~~----~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~--- 165 (621)
T 2q2e_B 93 VFAKLLYGSRFHA----LKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEV--- 165 (621)
T ss_dssp HHSCCCCC--CCC----CC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEE---
T ss_pred HhhhhccCCcccc----ccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhccccccccccc---
Confidence 4678999999975 4788999999999999999996 99998877 7899999 788776522111
Q ss_pred CCCCCCCceEEEEEeCcccccccccCCH---HHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEeccccHHHHHHHH
Q 008738 71 VDSKDRQGTRIRFWPDKQVFTTAIQFDH---NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWL 147 (555)
Q Consensus 71 ~~~~~~~GT~V~F~PD~~iF~~~~~~~~---~~l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~~~Gl~dyv~~l 147 (555)
......+||+|+|+ |.. .++. +.|.+||+++|++|||++|+|++++ .+.|+|++|+ ..+
T Consensus 166 ~~~~~~~GT~V~~~-----f~~--~~~~~~~~~I~~~L~~lAllnpgv~I~L~d~~-------~~~~~~~gg~----~~L 227 (621)
T 2q2e_B 166 RDWFRPHGTQIELE-----MRA--AYVKGRRQSIYEYLKATAIVNPHARITLIDPD-------GNEEVFERAT----DKM 227 (621)
T ss_dssp CCCSCSSCCCEEEE-----CSC--CCCCCSSSSSHHHHHHHHHHCCSCEEEECCTT-------SCCEEEECCC----CCC
T ss_pred ccCCCCCCCEEEEE-----ecC--ccchHHHHHHHHHHHHHHhhCCCCEEEEEECC-------ceEEEeCCcc----cch
Confidence 12345689999999 432 3444 7899999999999999999999986 2579999987 344
Q ss_pred hcCCCCCCceeEEEEeecceEEEEEEeecCCCCCceeeeeeCccccCCCCcchHHHHHHHHHHHHHHHHhcccCCC-CCC
Q 008738 148 NTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKD-KDI 226 (555)
Q Consensus 148 ~~~~~~~~~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~-k~~ 226 (555)
+....++++.++ +.... .++++++|+ ++| ++.||||+|+|.+|| +.+|+|+++.++.|+ ++.
T Consensus 228 ~~~~~~i~p~~~--G~~~~-~~eval~~~-~~~--~i~sFvN~i~T~~GG-----------r~in~~~~~~~l~k~~~~~ 290 (621)
T 2q2e_B 228 PEPAEEILPHPE--GIELG-TLMKMLHYT-ERQ--KLAPFLRYSFCKIGL-----------LTAEEICKAAGLDPEIDPH 290 (621)
T ss_dssp CCCCCCCCCCST--TCCHH-HHHHHHHHC-C-------CTTSSSSCC--C-----------HHHHHHHHTTTCCTTSCSS
T ss_pred hcccccccCCce--eeccC-eEEEEEeeC-CCe--EEEEEeCCcccCCCH-----------HHHHHHHHHhCccccccCC
Confidence 555555553331 22222 577889987 677 589999999999999 678899998888776 567
Q ss_pred CCCHhhhhcccEEEEEEeecCCCCCCccccccCChhhhhhhhhhhHHHHHHHHh
Q 008738 227 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLE 280 (555)
Q Consensus 227 ~i~~~dIregL~~~vsv~i~nP~FegQTKekL~n~~v~~~v~~~v~~~l~~~l~ 280 (555)
+++++|||+||++||||+++||+|+ +++++++..+.+.|.+||.
T Consensus 291 ~lt~dDiregL~avisvki~~Pqtk----------~l~pige~~i~~~l~~~~~ 334 (621)
T 2q2e_B 291 ALGRHEARKLIEAFEKVKIMAPPTD----------CLSPIGEDLIYRGLEKETT 334 (621)
T ss_dssp SCCSSSSTTTTHHHHTSCCSCCCST----------TCCCCCHHHHHHHHHHHSC
T ss_pred CCCHHHHHhhcEEEEEEECCCCCcc----------ccChhHHHHHHHHHHHhcC
Confidence 8999999999999999999999755 6778888889888888873
No 20
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=99.90 E-value=4.1e-24 Score=206.05 Aligned_cols=106 Identities=42% Similarity=0.660 Sum_probs=91.5
Q ss_pred chhhhhhhcceeEEEEEeCCEEEEEEecCCcCCccceeeccCCCCCCCCceEEEEEeCcccc-cccccCCHHHHHHHHHH
Q 008738 29 GLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF-TTAIQFDHNTIAGRIRE 107 (555)
Q Consensus 29 GasvvNalS~~f~V~v~r~gk~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF-~~~~~~~~~~l~~Rl~e 107 (555)
++|||||||++|+|+++|+|+.|+|+|++|+++.+++.+ +.+.++||+|+|+||+++| . +..|+++.|.+||++
T Consensus 92 t~SvVNALS~~l~v~v~r~g~~~~~~f~~G~~~~~l~~i----~~~~~~GT~V~F~Pd~~iF~~-~~~~~~~~l~~rlre 166 (198)
T 3ttz_A 92 TSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEV----GTTDKTGTVIRFKADGEIFTE-TTVYNYETLQQRIRE 166 (198)
T ss_dssp HTCHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEE----EECSCCEEEEEEEECTTTCCS-CCCCCHHHHHHHHHH
T ss_pred eeEehhhhcCeEEEEEEECCcEEEEEEeCCEECCCceec----cCCCCCCcEEEEEECHHHhcc-CCccCHHHHHHHHHH
Confidence 499999999999999999999999999999999888765 4456799999999999999 6 457999999999999
Q ss_pred HhhcCCCcEEEEeecCCCCCCCcceeEeccccH
Q 008738 108 LAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGL 140 (555)
Q Consensus 108 lA~Ln~gl~I~l~der~~~~~~~~~~f~~~~Gl 140 (555)
+|||||||+|+|+|+|.+.+ .+.++|||++||
T Consensus 167 lA~ln~gv~i~l~der~~~~-~~~~~f~~~gGi 198 (198)
T 3ttz_A 167 LAFLNKGIQITLRDERDEEN-VREDSYHYEGGI 198 (198)
T ss_dssp HHHHSTTCEEEEEECSSTTS-CEEEEECCC---
T ss_pred HhhcCCCCEEEEEeecCCCC-cceEEEEcCCCC
Confidence 99999999999999995421 135799999996
No 21
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.33 E-value=7.9e-14 Score=152.64 Aligned_cols=205 Identities=12% Similarity=0.109 Sum_probs=135.8
Q ss_pred EEeeecCCCCCCCCCCceeeccccCCcchhhhhhhcc-----eeEEEEEeCCE--EEEEEe--c---CCcCCccceeecc
Q 008738 2 IVTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSE-----SLEVTVWRDGM--EYHQKY--S---RGKPVTTLTCHVL 69 (555)
Q Consensus 2 v~t~lhaGgkF~~~~~~yk~sGGlhGvGasvvNalS~-----~f~V~v~r~gk--~y~q~f--~---~G~~~~~~~~~~~ 69 (555)
+|+.+|+++|+. +..++|.+|+|+++|+.+++ ++.|++..++. .+...+ . ++..+.+....
T Consensus 89 iF~~f~~tsk~~-----~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~-- 161 (530)
T 2zbk_B 89 AFGRVLYSSKYV-----NRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSV-- 161 (530)
T ss_dssp HHTSCCCSCCCC-----CSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEE--
T ss_pred HhccccccCCcc-----cccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCcccccccc--
Confidence 355667777773 24577889999999999999 78998887653 333332 1 11111111111
Q ss_pred CCCCCCCCceEEEEEeCcccccccccCCH-HHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEeccccHHHHHHHHh
Q 008738 70 PVDSKDRQGTRIRFWPDKQVFTTAIQFDH-NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN 148 (555)
Q Consensus 70 ~~~~~~~~GT~V~F~PD~~iF~~~~~~~~-~~l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~~~Gl~dyv~~l~ 148 (555)
+ .....+||+|+++ |..+ .+.. ..+.++++.+|++||+++|.|.+.. .+.|+++... +.+.
T Consensus 162 ~-~~~~~~GT~V~v~-----l~~~-~~e~~~~i~~~l~~~Al~~p~v~~~l~~~~-------~~~~~~~~~~----~~lp 223 (530)
T 2zbk_B 162 E-NTRGFHGTSVAIS-----IPGD-WPKAKSRIYEYIKRTYIITPYAEFIFKDPE-------GNVTYYPRLT----NKIP 223 (530)
T ss_dssp E-CCSSCCEEEEEEE-----EECC-HHHHHHHHHHHHHHHHHHCTTCCEEEECTT-------SCEEEECCCC----CCCC
T ss_pred C-CCCCCCCcEEEEE-----eccc-hhhHHHHHHHHHHHHHHHCCCcEEEEEECC-------CeEEEecCcc----cccc
Confidence 0 1224689999999 4322 2344 6899999999999999999999853 2356665421 0010
Q ss_pred cCCCCCCceeEEEEeecceEEEEEEe-ecCCCCCc-eeeeeeCccccCCCCcchHHHHHHHHHHHHHHHHhcccCCCC-C
Q 008738 149 TDKKPLHDVVGFRKDVDGITIDLALQ-WCSDAYSD-TMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-D 225 (555)
Q Consensus 149 ~~~~~~~~~i~~~~~~~~~~veval~-~s~~~~~~-~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~k-~ 225 (555)
. +....+. ...++.++.+++ ++ .++.. ++.+|+|++.|..||+|+++|++++ ++.++. .
T Consensus 224 ~---~~~~~~~---~~~Gi~~~~~l~~~~-~~~~~~~l~~fl~~~ft~~g~~~a~~~~~~~-----------gl~~~~~~ 285 (530)
T 2zbk_B 224 K---PPQEVKP---HPYGVDREEIKILIN-NLKRDYTIKEFLVNEFQSIGDTTADKILELA-----------GLKPNKKV 285 (530)
T ss_dssp C---CCCCCCC---CGGGCCHHHHHHHHT-TCSSCCBHHHHHHTTSTTCCHHHHHHHHHHT-----------TCCSSCBS
T ss_pred C---Ccceecc---CCCChhHHHHHHHHh-ccCCCceeHhhhcCccccccHHHHHHHHHhh-----------CCCCCCCc
Confidence 0 0000111 123555566666 54 45666 7899999999999999999998865 443433 3
Q ss_pred CCCCHhhhhcccEEEEEEe-ecCCC
Q 008738 226 ISLSGEHVREGLTCIISVR-VPNPE 249 (555)
Q Consensus 226 ~~i~~~dIregL~~~vsv~-i~nP~ 249 (555)
.+++++|++++|.++++++ +.+|.
T Consensus 286 ~~l~~~~~~~ll~a~~~~k~~~~P~ 310 (530)
T 2zbk_B 286 KNLTEEEITRLVETFKKDEDFRSPS 310 (530)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCCCC
T ss_pred ccCCHHHHHHHHHHHHhccCCCCCC
Confidence 5899999999999999998 77775
No 22
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.32 E-value=1.3e-11 Score=128.03 Aligned_cols=210 Identities=17% Similarity=0.204 Sum_probs=137.5
Q ss_pred ecCCCCCCCCCCcee-eccccCCcchhhhhhhcceeEEEEEeCCE-EEEEEecCCcCC-ccceeeccCCCCCCCCceEEE
Q 008738 6 LHAGGKFGGSSSGYS-VSGGLHGVGLSVVNALSESLEVTVWRDGM-EYHQKYSRGKPV-TTLTCHVLPVDSKDRQGTRIR 82 (555)
Q Consensus 6 lhaGgkF~~~~~~yk-~sGGlhGvGasvvNalS~~f~V~v~r~gk-~y~q~f~~G~~~-~~~~~~~~~~~~~~~~GT~V~ 82 (555)
.|+++|+.+.++.++ .+.|.+|+|++.++++| +++|+++++|. ...+.|.+|... .+.. .....+||+|+
T Consensus 76 ~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~GT~V~ 148 (333)
T 1b63_A 76 RHATSKIASLDDLEAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVK------PAAHPVGTTLE 148 (333)
T ss_dssp TTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEE------EECCCSEEEEE
T ss_pred cccccCccccchhhhccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeee------cccCCCCCEEE
Confidence 478888864211333 58899999999999999 79999998763 233346667642 2211 12346899999
Q ss_pred EE------eCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEecc-----ccHHHHHHHHhcCC
Q 008738 83 FW------PDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA-----GGLEEYVQWLNTDK 151 (555)
Q Consensus 83 F~------PD~~iF~~~~~~~~~~l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~~-----~Gl~dyv~~l~~~~ 151 (555)
|+ |+...|-.+....++.|.++++.+|+++|++++.|.+.. ...+.++ +++.+++..+.+..
T Consensus 149 v~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~~p~v~~~l~~ng-------~~~~~~~~~~~~~~~~~~i~~i~G~~ 221 (333)
T 1b63_A 149 VLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNG-------KIVRQYRAVPEGGQKERRLGAICGTA 221 (333)
T ss_dssp EESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETT-------EEEEEECCCCTTCCTHHHHHHHHCHH
T ss_pred EecccccchhhhhhhccHHHHHHHHHHHHHHHhccCCCcEEEEEECC-------EEEEecCCCCCCchHHHHHHHHhChh
Confidence 99 999888323345568899999999999999999997642 2344444 37888888765321
Q ss_pred CCCCceeEEEEeecceEEEEEEeecC--CCC-CceeeeeeCccccCCCCcchHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 008738 152 KPLHDVVGFRKDVDGITIDLALQWCS--DAY-SDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 228 (555)
Q Consensus 152 ~~~~~~i~~~~~~~~~~veval~~s~--~~~-~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~k~~~i 228 (555)
...+.+.+..+.+++.++..+.+.. ..+ ...++.|||+.+... ..|.++|++..+.. +.+.
T Consensus 222 -~~~~li~i~~~~~~~~v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~---------~~l~~ai~~~y~~~-l~~~----- 285 (333)
T 1b63_A 222 -FLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRD---------RLINHAIRQACEDK-LGAD----- 285 (333)
T ss_dssp -HHHHEEEEEEEETTEEEEEEEECGGGCCTTGGGCEEEEETTEECCC---------HHHHHHHHHHHHHH-SSSC-----
T ss_pred -hHhheEEEEecCCCEEEEEEEEcCccccCCCCCcEEEEECCEEecC---------HHHHHHHHHHHHhh-ccCC-----
Confidence 1113455666667788888887763 133 567899999999864 33555555433221 1011
Q ss_pred CHhhhhcccEEEEEEeecCCCCC
Q 008738 229 SGEHVREGLTCIISVRVPNPEFE 251 (555)
Q Consensus 229 ~~~dIregL~~~vsv~i~nP~Fe 251 (555)
..=.+++++.++.-..|
T Consensus 286 ------~~P~~~l~l~~~p~~vD 302 (333)
T 1b63_A 286 ------QQPAFVLYLEIDPHQVD 302 (333)
T ss_dssp ------CCCCEEEEEECCGGGEE
T ss_pred ------CCcEEEEEEEeCchhcc
Confidence 12267788888754444
No 23
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.23 E-value=8.2e-11 Score=122.22 Aligned_cols=214 Identities=10% Similarity=0.109 Sum_probs=127.2
Q ss_pred eeecCCCCCCCCCCce-eeccccCCcchhhhhhhcceeEEEEEeCC--EEEEEEecCCcCCccceeeccCCCCCCCCceE
Q 008738 4 TVLHAGGKFGGSSSGY-SVSGGLHGVGLSVVNALSESLEVTVWRDG--MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTR 80 (555)
Q Consensus 4 t~lhaGgkF~~~~~~y-k~sGGlhGvGasvvNalS~~f~V~v~r~g--k~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~ 80 (555)
...|+++|+++.++.| ..|+|+||+|++.+|++| +++|+++++| ..|.+.|++|.+..++... ..++||+
T Consensus 78 ~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~------~~~~GTt 150 (348)
T 3na3_A 78 CERFTTSKLQSFEDLASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKPC------AGNQGTQ 150 (348)
T ss_dssp TSTTCCSSCCCC---------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEEE------CCCSEEE
T ss_pred hccccccccCcchhhhccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeEe------cCCCCcE
Confidence 4579999997642234 579999999999999999 7999999987 4799999999876544322 3478999
Q ss_pred EEE------EeCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEec--cccHHHHHHHHhcCCC
Q 008738 81 IRF------WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF--AGGLEEYVQWLNTDKK 152 (555)
Q Consensus 81 V~F------~PD~~iF~~~~~~~~~~l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~--~~Gl~dyv~~l~~~~~ 152 (555)
|++ +|+..+|-.+....++.|.++++++|+++|++++.|.+.... ...|.. .+.+.+=+..+-+..-
T Consensus 151 V~v~~LF~n~P~R~k~lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~-----~~~~~~~~~~~~~~~i~~i~G~~~ 225 (348)
T 3na3_A 151 ITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGET-----VADVRTLPNASTVDNIRSIFGNAV 225 (348)
T ss_dssp EEEESTTTTCHHHHHTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCS-----SCSEECCTTCCHHHHHHHHHCHHH
T ss_pred EEECcccccCchhhhhccccHHHHHHHHHHHHHHHhhCCCeEEEEEECCEE-----EEEeecCCCCCHHHHHHHHhChHh
Confidence 999 699988832334567889999999999999999999986421 112322 2345555544432110
Q ss_pred CCCceeEEEEeec--ceEEEEEEeecCCC-CCceeeeeeCccccCCCCcchHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 008738 153 PLHDVVGFRKDVD--GITIDLALQWCSDA-YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 229 (555)
Q Consensus 153 ~~~~~i~~~~~~~--~~~veval~~s~~~-~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~k~~~i~ 229 (555)
....+.+..+.+ ++.++--+.-..-. -+..++-|||+-+-..- .|.++|++..+. .+...
T Consensus 226 -~~~l~~v~~~~~~~~~~i~G~is~p~~~~~~~~q~~fVNgR~v~~~---------~l~~ai~~~y~~--~l~~~----- 288 (348)
T 3na3_A 226 -SRELIEIGCEDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVEST---------SLRKAIETVYAA--YLPKN----- 288 (348)
T ss_dssp -HTTEEEEEEEEGGGTEEEEEEEECSSCCBSSCEEEEEETTEECCCT---------THHHHHHHHHHT--TSCTT-----
T ss_pred -HhhcEEEEeecCCccEEEEEEEeCCccCCCcccEEEEECCeEecCH---------HHHHHHHHHHHH--hCcCC-----
Confidence 011222332322 34554322211101 12357899999665431 345555543332 11110
Q ss_pred HhhhhcccEEEEEEeecCCCCC
Q 008738 230 GEHVREGLTCIISVRVPNPEFE 251 (555)
Q Consensus 230 ~~dIregL~~~vsv~i~nP~Fe 251 (555)
..=.+++++.++.-..|
T Consensus 289 -----~~P~~~L~l~~~p~~vD 305 (348)
T 3na3_A 289 -----THPFLYLSLEISPQNVD 305 (348)
T ss_dssp -----CBCEEEEEEECC-----
T ss_pred -----CceEEEEEEEeChhhee
Confidence 13378888888755555
No 24
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.12 E-value=5.9e-10 Score=116.70 Aligned_cols=215 Identities=13% Similarity=0.105 Sum_probs=130.1
Q ss_pred eeecCCCCCCCCC-CceeeccccCCcchhhhhhhcceeEEEEEeCC-EEEEEEec-CCcCCccceeeccCCCCCCCCceE
Q 008738 4 TVLHAGGKFGGSS-SGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYS-RGKPVTTLTCHVLPVDSKDRQGTR 80 (555)
Q Consensus 4 t~lhaGgkF~~~~-~~yk~sGGlhGvGasvvNalS~~f~V~v~r~g-k~y~q~f~-~G~~~~~~~~~~~~~~~~~~~GT~ 80 (555)
...|+++|+.+.+ .....|+|+||+|++.+|++| +++|+++++| .-|.++|. +|...... .....+||+
T Consensus 75 ~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~-------~~~~~~GTt 146 (367)
T 3h4l_A 75 ALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKT-------TTSRNKGTT 146 (367)
T ss_dssp TCCEEC---------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEE-------EECCSSEEE
T ss_pred eeccccCcCCchhhhhhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeec-------cccCCCCeE
Confidence 4568899986542 234579999999999999999 5999999887 78999997 67664322 124578999
Q ss_pred EEE------EeCccc-ccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEecc--ccHHHHHHHHhcCC
Q 008738 81 IRF------WPDKQV-FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA--GGLEEYVQWLNTDK 151 (555)
Q Consensus 81 V~F------~PD~~i-F~~~~~~~~~~l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~~--~Gl~dyv~~l~~~~ 151 (555)
|++ +|+..+ |-.+...++..|.++++++|+++|++++.|.+..... .....|... +.+.+-+..+-+..
T Consensus 147 V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~--~~~~~~~t~~~~~~~~~i~~i~G~~ 224 (367)
T 3h4l_A 147 VLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKG--KKNLILSTMRNSSMRKNISSVFGAG 224 (367)
T ss_dssp EEEESTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTS--CEEEEEECCSSCCHHHHHHHHHCTT
T ss_pred EEEchhhccCchhhhhhccchHHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCC--cceEEEECCCCCCHHHHHHHHhCHH
Confidence 999 699888 8433456678999999999999999999998742110 012334332 35666665554432
Q ss_pred CCCCceeEEEE-----------------------eecceEEEEEEeecC----CCCCceeeeeeCccccCCCCcchHHHH
Q 008738 152 KPLHDVVGFRK-----------------------DVDGITIDLALQWCS----DAYSDTMLGYANSIRTIDGGTHIEGVK 204 (555)
Q Consensus 152 ~~~~~~i~~~~-----------------------~~~~~~veval~~s~----~~~~~~~~SFVN~I~T~~GGTHv~g~~ 204 (555)
.. ..-+.+.. +..++.++--+.-.. ..-...++-|||+=+-..
T Consensus 225 ~~-~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~--------- 294 (367)
T 3h4l_A 225 GM-RGLEEVDLVLDLNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEY--------- 294 (367)
T ss_dssp TT-TTEEEEEEEEECGGGCCCCC------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECC---------
T ss_pred HH-hccEEEecccccccccccccccccccccccccCCcEEEEEEEeCCcccccCCCCCcEEEEECCCEecC---------
Confidence 11 11111111 223344443222110 011245789999866542
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCHhhhhcccEEEEEEeecCCCCC
Q 008738 205 ASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE 251 (555)
Q Consensus 205 ~al~~~in~~~kk~~~~k~k~~~i~~~dIregL~~~vsv~i~nP~Fe 251 (555)
..|.++|++..+... . ...=.+++++.++.-.+|
T Consensus 295 ~~l~~ai~~~y~~~~--~-----------~~~P~~~L~l~~~p~~vD 328 (367)
T 3h4l_A 295 STLLKCCNEVYKTFN--N-----------VQFPAVFLNLELPMSLID 328 (367)
T ss_dssp HHHHHHHHHHHHTTC--S-----------SCBCCEEEEEECCGGGEE
T ss_pred HHHHHHHHHHHHhcC--C-----------CCCcEEEEEEEcChHHcc
Confidence 356677766544321 1 123378888888755555
No 25
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.82 E-value=6.8e-09 Score=108.80 Aligned_cols=134 Identities=13% Similarity=0.145 Sum_probs=88.6
Q ss_pred ecCCCCCCCCCCcee-eccccCCcchhhhhhhcceeEEEEEeCCE--EEEEEec-CCcCCccceeeccCCCCCCCCceEE
Q 008738 6 LHAGGKFGGSSSGYS-VSGGLHGVGLSVVNALSESLEVTVWRDGM--EYHQKYS-RGKPVTTLTCHVLPVDSKDRQGTRI 81 (555)
Q Consensus 6 lhaGgkF~~~~~~yk-~sGGlhGvGasvvNalS~~f~V~v~r~gk--~y~q~f~-~G~~~~~~~~~~~~~~~~~~~GT~V 81 (555)
.|+++|+.+.++.|+ .|.|.||+|++.++++| +++|+++++|. .|.+.|. +|...... .....+||+|
T Consensus 86 ~~~tsK~~~~~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~-------~~~~~~GT~V 157 (365)
T 1h7s_A 86 KHHTSKIQEFADLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQKT-------PYPRPRGTTV 157 (365)
T ss_dssp ----------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEEE-------ECCCCSEEEE
T ss_pred hccccccccccchhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEeec-------ccCCCCCcEE
Confidence 578888865323566 58999999999999999 99999998776 6899997 56543211 1234689999
Q ss_pred EEE----eCccc---ccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCCCcceeEeccc--cHHHHHHHHhc
Q 008738 82 RFW----PDKQV---FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNT 149 (555)
Q Consensus 82 ~F~----PD~~i---F~~~~~~~~~~l~~Rl~elA~Ln~gl~I~l~der~~~~~~~~~~f~~~~--Gl~dyv~~l~~ 149 (555)
+|+ +.|.+ |-.+...+++.|.++++++|+++|+++|.|.+..... .....|..++ ++.+.+..+.+
T Consensus 158 ~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~G 232 (365)
T 1h7s_A 158 SVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQG--KRQPVVCTGGSPSIKENIGSVFG 232 (365)
T ss_dssp EEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTS--CEEEEEECCCCSSHHHHHHHHHC
T ss_pred EEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCCceEEEEEecCCCC--cEEEEEEcCCCchHHHHHHHhcC
Confidence 997 33322 4112234567899999999999999999999876321 1245566654 78888776543
No 26
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.57 E-value=2.3e-06 Score=92.45 Aligned_cols=105 Identities=13% Similarity=0.122 Sum_probs=68.8
Q ss_pred EeeecCCCCCCCCCCceeeccccCCcchhhhhhhcce-----eEEEEEeCCE--EEEEE--ec----CCcCCccceeecc
Q 008738 3 VTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSES-----LEVTVWRDGM--EYHQK--YS----RGKPVTTLTCHVL 69 (555)
Q Consensus 3 ~t~lhaGgkF~~~~~~yk~sGGlhGvGasvvNalS~~-----f~V~v~r~gk--~y~q~--f~----~G~~~~~~~~~~~ 69 (555)
|..+|+++|+.. +...|| +|+|+++|+.+++. +.|++..++. .+... +. .|......+ .
T Consensus 91 F~~f~~tsk~~~----~~~~gg-~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~-~-- 162 (471)
T 1mu5_A 91 FGRVLYSSKYVN----RQTRGM-YGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGS-V-- 162 (471)
T ss_dssp HHCCCCC-CCCC----SCCSCS-CTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEE-E--
T ss_pred hccccccccccc----ccCCCC-ceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccccccc-c--
Confidence 455667777732 234455 99999999999998 8898887653 33333 22 222221111 0
Q ss_pred CCCCCCCCceEEEEEeCcccccccccCCH-HHHHHHHHHHhhcCCCcEEEEeec
Q 008738 70 PVDSKDRQGTRIRFWPDKQVFTTAIQFDH-NTIAGRIRELAFLNPKLTIALRKE 122 (555)
Q Consensus 70 ~~~~~~~~GT~V~F~PD~~iF~~~~~~~~-~~l~~Rl~elA~Ln~gl~I~l~de 122 (555)
+ .....+||+|+++ |..+ ..+. +.|.++++++|+++|+++|.|.+.
T Consensus 163 ~-~~~~~~GT~V~v~-----l~~~-~~e~~~~I~~~l~~~al~~p~v~i~l~~~ 209 (471)
T 1mu5_A 163 E-NTRGFHGTSVAIS-----IPGD-WPKAKSRIYEYIKRTYIITPYAEFIFKDP 209 (471)
T ss_dssp E-CCTTCCEEEEEEE-----EECC-HHHHHHHHHHHHHHHHHHCTTCEEEEECT
T ss_pred c-CCCCCCCEEEEEE-----EcCC-cchHHHHHHHHHHHHHhHCCCeEEEEEEC
Confidence 0 1234689999999 4322 2333 689999999999999999999875
No 27
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=80.42 E-value=4.2 Score=40.07 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=59.9
Q ss_pred eccccCCcchhhhhhhcceeEEEEEeCC-EEEEEEecCCcCCccceeeccCCCCCCCCceEEEEEeCcccccccccCCHH
Q 008738 21 VSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHN 99 (555)
Q Consensus 21 ~sGGlhGvGasvvNalS~~f~V~v~r~g-k~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~~~~ 99 (555)
..-|..|+|...+=+++..++|.++..+ .-|..+...+... .. .+.+ .....+||+|+....... ..-++..
T Consensus 157 ~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~-~i--~~~~-~~~~~~GT~I~l~Lk~~~---~e~~e~~ 229 (264)
T 1yc1_A 157 SMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TV--RTDT-GEPMGRGTKVILHLKEDQ---TEYLEER 229 (264)
T ss_dssp GGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEE-EE--EECC-SSCCSSEEEEEEEECGGG---GGGGSHH
T ss_pred hhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceE-EE--eecC-CCCCCCCeEEEEEECCch---hhhhhHH
Confidence 4678999999999999999999998654 2344444433221 11 1111 223468999998742221 0114567
Q ss_pred HHHHHHHHHhhcCCCcEEEEeecC
Q 008738 100 TIAGRIRELAFLNPKLTIALRKED 123 (555)
Q Consensus 100 ~l~~Rl~elA~Ln~gl~I~l~der 123 (555)
.|++.++.+|-.. ..-|++++++
T Consensus 230 ~i~~lv~k~s~fi-~~PI~~~~~~ 252 (264)
T 1yc1_A 230 RIKEIVKKHSQFI-GYPITLFVEK 252 (264)
T ss_dssp HHHHHHHHHTTTC-SSCEEECCCC
T ss_pred HHHHHHHHHHhhC-CCCEEEeecc
Confidence 7888888887443 3668998875
No 28
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=76.60 E-value=9.4 Score=37.42 Aligned_cols=93 Identities=19% Similarity=0.282 Sum_probs=59.0
Q ss_pred eccccCCcchhhhhhhcceeEEEEEeCC-EEEEEEecCCcCCccceeeccCCCCCCCCceEEEEEeCcccccccccCCHH
Q 008738 21 VSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHN 99 (555)
Q Consensus 21 ~sGGlhGvGasvvNalS~~f~V~v~r~g-k~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~~~~ 99 (555)
.+-|.-|+|..-+=++|..++|.++.++ .-|..+...|... .+... + +....+||+|+-..-... +.-.+..
T Consensus 149 ~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~~~-~v~~~--~-~~~~~~GT~I~l~LK~~~---~e~~e~~ 221 (256)
T 3o0i_A 149 SMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTD--T-GEPMGRGTKVILHLKEDQ---TEYLEER 221 (256)
T ss_dssp GGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEE-EEEEC--C-SSCCSSEEEEEEEECGGG---GGGGCHH
T ss_pred cccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEeccceE-EEeeC--C-CCCCCCCcEEEEEEcCcc---hhhccHH
Confidence 4789999999999999999999998644 4466665554321 11111 1 234578999988833211 1113456
Q ss_pred HHHHHHHHHh-hc-CCCcEEEEeecC
Q 008738 100 TIAGRIRELA-FL-NPKLTIALRKED 123 (555)
Q Consensus 100 ~l~~Rl~elA-~L-n~gl~I~l~der 123 (555)
.|+.-++.+| || +| |++..++
T Consensus 222 ~I~~iv~k~s~~l~~P---I~~~~~~ 244 (256)
T 3o0i_A 222 RIKEIVKKHSQFIGYP---ITLFVEK 244 (256)
T ss_dssp HHHHHHHHHCTTCSSC---EEECCC-
T ss_pred HHHHHHHHHHhhCCCC---eEEeeee
Confidence 7888888888 33 45 6665543
No 29
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=76.10 E-value=11 Score=36.25 Aligned_cols=92 Identities=20% Similarity=0.277 Sum_probs=58.8
Q ss_pred eccccCCcchhhhhhhcceeEEEEEeCC-EEEEEEecCCcCCccceeeccCCCCCCCCceEEEEEeCccccccccc-CCH
Q 008738 21 VSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQ-FDH 98 (555)
Q Consensus 21 ~sGGlhGvGasvvNalS~~f~V~v~r~g-k~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~-~~~ 98 (555)
.+-|.-|+|...+=++|.+++|.++..+ .-|..++..|... .+... + +.....||+|+-..-..- .+ .+.
T Consensus 121 ~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~-~v~~~--~-~~~~~~GT~I~v~Lk~~~----~E~~e~ 192 (228)
T 3t0h_A 121 SMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTD--T-GEPMGRGTKVILHLKEDQ----TEYLEE 192 (228)
T ss_dssp GGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEE-EEEEC--C-SSCCSSEEEEEEEECGGG----GGGGSH
T ss_pred ccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceE-EEeec--C-CCCCCCCcEEEEEECCch----hhhhhH
Confidence 4779999999999999999999998654 4466666655321 11111 1 224478999988733221 11 345
Q ss_pred HHHHHHHHHHh-h-cCCCcEEEEeecC
Q 008738 99 NTIAGRIRELA-F-LNPKLTIALRKED 123 (555)
Q Consensus 99 ~~l~~Rl~elA-~-Ln~gl~I~l~der 123 (555)
..|+.-++.+| | -+| |+++.++
T Consensus 193 ~~i~~iv~~~a~~l~~P---i~~~~~~ 216 (228)
T 3t0h_A 193 RRIKEIVKKHSQFIGYP---ITLFVEK 216 (228)
T ss_dssp HHHHHHHHHHSTTCSSC---EEECCC-
T ss_pred HHHHHHHHHHHhhCCCC---eEEeecc
Confidence 67888888888 3 345 7776544
No 30
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=75.58 E-value=9.2 Score=36.80 Aligned_cols=85 Identities=18% Similarity=0.256 Sum_probs=54.7
Q ss_pred ccccCCcchhhhhhhcceeEEEEEeCCE----EEEEEecCCcCCccceeeccCCCCCCCCceEEEEEeCc--cccccccc
Q 008738 22 SGGLHGVGLSVVNALSESLEVTVWRDGM----EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDK--QVFTTAIQ 95 (555)
Q Consensus 22 sGGlhGvGasvvNalS~~f~V~v~r~gk----~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~--~iF~~~~~ 95 (555)
.-|..|+|...+=+++..++|.++..+. -|...+..+... .+... ....+||+|+..... .-|
T Consensus 139 ~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~-~i~~~-----~~~~~GT~V~v~Lk~~~~~~----- 207 (235)
T 2ior_A 139 LIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVADI-----TKEDRGTEITLHLREGEDEF----- 207 (235)
T ss_dssp HHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEE-EEEEE-----CCCSCEEEEEEEECTTCGGG-----
T ss_pred cCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcE-EEeeC-----CCCCCCEEEEEEEcCchhhh-----
Confidence 4589999998888899999999987653 455555543221 11111 234689998875332 222
Q ss_pred CCHHHHHHHHHHHh-hc-CCCcEEEEe
Q 008738 96 FDHNTIAGRIRELA-FL-NPKLTIALR 120 (555)
Q Consensus 96 ~~~~~l~~Rl~elA-~L-n~gl~I~l~ 120 (555)
++...|.+.++..| || +| |+++
T Consensus 208 ~e~~~i~~lv~~ya~~l~~P---I~~~ 231 (235)
T 2ior_A 208 LDDWRVRSIISKYSDHIALP---VEIE 231 (235)
T ss_dssp GCHHHHHHHHHHHTTSCCSC---EEEC
T ss_pred CCHHHHHHHHHHHhccCCCC---eEec
Confidence 45678888888888 33 44 5554
No 31
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=74.62 E-value=19 Score=38.96 Aligned_cols=98 Identities=14% Similarity=0.284 Sum_probs=62.9
Q ss_pred eEEEEEEeecCCCC---CceeeeeeCccccC-CCCcchHHHHHHHHHHHHHHH-HhcccCCCCCCCCCHhhhhcccEEEE
Q 008738 167 ITIDLALQWCSDAY---SDTMLGYANSIRTI-DGGTHIEGVKASLTRTLNSLG-KKSKTVKDKDISLSGEHVREGLTCII 241 (555)
Q Consensus 167 ~~veval~~s~~~~---~~~~~SFVN~I~T~-~GGTHv~g~~~al~~~in~~~-kk~~~~k~k~~~i~~~dIregL~~~v 241 (555)
..||+|+.|.-+.- .-.++-|+|-|++. +.| ..++++++...- +..++ ++. ..-+.++|
T Consensus 350 f~vE~~~a~gg~~~~~~~~~i~r~aNrvpl~~~~~------~~~~~~~~~~~~w~~y~~------~~~----~~~~~~~v 413 (530)
T 2zbk_B 350 FIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEK------SDVIWKVVEELDWKRYGI------ESD----QYQMVVMV 413 (530)
T ss_dssp EEEEEEEEESTTSCCBSSCEEEEEETTEEECTTGG------GCHHHHHHHHSCTTSSSC------CCS----SBCEEEEE
T ss_pred EEEEEEeeccCCCCCCCCceEEEEecCCceeecCC------cchhhhhhccCChhhcCc------CCC----CCCEEEEE
Confidence 56899999972211 23799999999996 444 245666664321 11222 110 12578999
Q ss_pred EEeecCCCCCCccccccCC-hhhhhhhhhhhH---HHHHHHHh
Q 008738 242 SVRVPNPEFEGQTKTRLGN-PEVRKVVDQSVQ---EYLTEYLE 280 (555)
Q Consensus 242 sv~i~nP~FegQTKekL~n-~~v~~~v~~~v~---~~l~~~l~ 280 (555)
++-.++--|.|-.|+.+.. |++...+...+. ..|..|+.
T Consensus 414 ~i~st~vp~~~~~Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~ 456 (530)
T 2zbk_B 414 HLCSTKIPYKSAGKESIAEVENIEKEIKNALMEVARKLKQYLS 456 (530)
T ss_dssp EEEESSCCBSSSSCSCBCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EeccCCCCcCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876 565555544433 34555554
No 32
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=71.52 E-value=19 Score=34.11 Aligned_cols=96 Identities=18% Similarity=0.225 Sum_probs=58.7
Q ss_pred eccccCCcchhhhhhhcceeEEEEEeCC-EEEEEEecCCcCCccceeeccCCCCCCCCceEEEEEeCcccccccccCCHH
Q 008738 21 VSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHN 99 (555)
Q Consensus 21 ~sGGlhGvGasvvNalS~~f~V~v~r~g-k~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~~~~ 99 (555)
..-|..|+|...+-+++..++|.++..+ .-|..++..|... ..... +......+||+|+....... ..-++..
T Consensus 115 ~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~-~i~~~--~~~~~~~~GT~I~l~Lk~~~---~~~~e~~ 188 (220)
T 2wer_A 115 SMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSF-TVTLD--EVNERIGRGTILRLFLKDDQ---LEYLEEK 188 (220)
T ss_dssp GGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEE-EEEEC--SSSCCCSSEEEEEEEECTTC---GGGGCHH
T ss_pred ccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCce-Eeecc--cCCCCCCCCeEEEEEECcch---HHhCCHH
Confidence 4678899999999899999999998654 2344455443221 11111 10124468999988743221 0013567
Q ss_pred HHHHHHHHHhhcCCCcEEEEeecC
Q 008738 100 TIAGRIRELAFLNPKLTIALRKED 123 (555)
Q Consensus 100 ~l~~Rl~elA~Ln~gl~I~l~der 123 (555)
.|++.++..|-.. ..-|++++++
T Consensus 189 ~i~~~v~~~a~~l-~~PI~~~~~~ 211 (220)
T 2wer_A 189 RIKEVIKRHSEFV-AYPIQLVVTK 211 (220)
T ss_dssp HHHHHHHHHCTTC-CSCEEECCCC
T ss_pred HHHHHHHHHHhcC-CCceEEEecc
Confidence 7788888877433 3568888765
No 33
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=59.93 E-value=42 Score=33.23 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=57.6
Q ss_pred eccccCCcchhhhhhhcceeEEEEEeCC-EEEEEEecCCcCCccceeeccCCCCCCCCceEEEEEeCcccccccccCCHH
Q 008738 21 VSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHN 99 (555)
Q Consensus 21 ~sGGlhGvGasvvNalS~~f~V~v~r~g-k~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~~~~ 99 (555)
-..|+-|||...+=.++..++|.++.++ .-|..+...|.. -.+. +.+.+....+||+|+......-- .-++..
T Consensus 136 ~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~g~-fti~--~~~~~~~~~~GT~I~L~Lked~~---e~le~~ 209 (281)
T 3peh_A 136 SLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAK-FTIY--KDPRGATLKRGTRISLHLKEDAT---NLLNDK 209 (281)
T ss_dssp TTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTSC-EEEE--ECTTCSTTSSEEEEEEEECGGGG---GGGSHH
T ss_pred ccccccCccchhhccccCEEEEEEecCCCCEEEEEECCCcc-EEEE--EcCCCCCCCCCeEEEEEECCchh---hhcCHH
Confidence 3579999999999889999999998754 334443333321 1111 11223345789999888654321 113556
Q ss_pred HHHHHHHHHhhcCCCcEEEEeecC
Q 008738 100 TIAGRIRELAFLNPKLTIALRKED 123 (555)
Q Consensus 100 ~l~~Rl~elA~Ln~gl~I~l~der 123 (555)
.|+.-++..+-.- +..|+|..++
T Consensus 210 ~ik~ivkkys~fi-~~pI~l~~~k 232 (281)
T 3peh_A 210 KLMDLISKYSQFI-QFPIYLLHEN 232 (281)
T ss_dssp HHHHHHHHHTTTC-CSCEEEEEEE
T ss_pred HHHHHHHHhhccC-CcceEEeeee
Confidence 6666666655222 3567777665
No 34
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=59.10 E-value=28 Score=33.35 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=59.2
Q ss_pred eccccCCcchhhhhhhcceeEEEEEeCC-EEEEEEecCCcCCccceeeccCCCCCCCCceEEEEEeCcccccccccCCHH
Q 008738 21 VSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHN 99 (555)
Q Consensus 21 ~sGGlhGvGasvvNalS~~f~V~v~r~g-k~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~~~~ 99 (555)
..-|.-|||...+=.++..++|.++..+ .-|..+...|.. .... .+.+....+||+|+....... ..-++..
T Consensus 126 ~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~gg~~--~i~~--~~~~~~~~~GT~I~l~Lk~~~---~~~le~~ 198 (236)
T 2gqp_A 126 ELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF--SVIA--DPRGNTLGRGTTITLVLKEEA---SDYLELD 198 (236)
T ss_dssp HHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESSSCE--EEEE--CTTCSCSSSEEEEEEEECGGG---GGGGCHH
T ss_pred hhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeCCEE--EEEe--ccCCCCCCCCeEEEEEECCcc---hhhChHH
Confidence 3558899999999999999999998743 223333332221 1111 111123468999988743321 1113667
Q ss_pred HHHHHHHHHhhcCCCcEEEEeecCC
Q 008738 100 TIAGRIRELAFLNPKLTIALRKEDS 124 (555)
Q Consensus 100 ~l~~Rl~elA~Ln~gl~I~l~der~ 124 (555)
.|++.++..|-.. ...|++++++.
T Consensus 199 ~i~~lv~~~s~~i-~~pI~~~~~~~ 222 (236)
T 2gqp_A 199 TIKNLVKKYSQFI-NFPIYVWSSKT 222 (236)
T ss_dssp HHHHHHHHHHTTC-SSCEEEEEECC
T ss_pred HHHHHHHHHhhhC-CCceEEeeeec
Confidence 7888888887443 36688888763
No 35
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=58.06 E-value=36 Score=32.85 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=56.7
Q ss_pred eccccCCcchhhhhhhcceeEEEEEeCC-EEEEEEecCCcCCccceeeccCCCCCCCCceEEEEEeCcccccccccCCHH
Q 008738 21 VSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHN 99 (555)
Q Consensus 21 ~sGGlhGvGasvvNalS~~f~V~v~r~g-k~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~~~~ 99 (555)
-.-|.-|||..-+=.++..++|.++.++ ..|..+...+ ..-.+... + +....+||+|+-.....-- .-++..
T Consensus 128 ~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~-g~fti~~~--~-~~~~~~GT~I~L~lk~d~~---e~l~~~ 200 (239)
T 3nmq_A 128 SMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAG-GSFTVRAD--H-GEPIGRGTKVILHLKEDQT---EYLEER 200 (239)
T ss_dssp GGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECST-TEEEEEEC--C-SSCCSSEEEEEEEECGGGG---GGGSHH
T ss_pred ccccccCcccccccccCCEEEEEEeeCCCceeEEEECCC-CcEEEEec--C-CCcCCCCCEEEEEECCChH---HhcCHH
Confidence 4679999999999899999999998643 3344333322 21111111 1 2344789999887544311 013445
Q ss_pred HHHHHHHHHhhcCCCcEEEEeecCC
Q 008738 100 TIAGRIRELAFLNPKLTIALRKEDS 124 (555)
Q Consensus 100 ~l~~Rl~elA~Ln~gl~I~l~der~ 124 (555)
.|+.-++..+-. =+.-|++.-++.
T Consensus 201 ~i~~lv~kys~f-i~~pI~~~~~~~ 224 (239)
T 3nmq_A 201 RVKEVVKKHSQF-IGYPITLYLEKE 224 (239)
T ss_dssp HHHHHHHHHCTT-CSSCEEECCCSC
T ss_pred HHHHHHHHHHhc-cCCceEEeeeee
Confidence 566555555422 246688876663
No 36
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=45.16 E-value=5.7 Score=34.33 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.0
Q ss_pred ceee-EEEeecCCCCCcchHHhHHHHH
Q 008738 407 RYHK-IIILTDADVDGAHIRTLLLTFF 432 (555)
Q Consensus 407 RYgk-iiimtDaD~DG~HI~~Llltff 432 (555)
||.. |||+||.|.=|-.|+.-+...|
T Consensus 60 ~~~~~VIIltD~D~aGe~ir~~i~~~l 86 (118)
T 1t6t_1 60 GKWEKVILLFDLDTHGERINQKMKELL 86 (118)
T ss_dssp TTCSEEEECCCSSHHHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCChhHHHHHHHHHHhc
Confidence 3566 9999999999999998886655
No 37
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=44.00 E-value=51 Score=32.34 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=53.4
Q ss_pred ccccCCcchhhhhhhcceeEEEEEeCC-EEEEEEecCCcCCccceeeccCCCCCCCCceEEEEEeCcccccccccCCHHH
Q 008738 22 SGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT 100 (555)
Q Consensus 22 sGGlhGvGasvvNalS~~f~V~v~r~g-k~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~~~~~ 100 (555)
.-|..|||...+=.++..++|.++..+ ..|......|.. .+. ..+.+....+||+|+......- ..-++...
T Consensus 123 ~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~gg~~--~i~--~~~~~~~~~~GT~I~L~Lk~d~---~e~le~~~ 195 (269)
T 1qy5_A 123 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF--SVI--ADPRGNTLGRGTTITLVLKEEA---SDYLELDT 195 (269)
T ss_dssp HHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSCE--EEE--ECTTCSCSSSEEEEEEEECGGG---GGGGSHHH
T ss_pred hcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeCCEE--EEE--eccCCCcCCCCeEEEEEEcccc---hhhhhHHH
Confidence 348999999999999999999998753 223333322221 111 1111223468999887643321 11134555
Q ss_pred HHHHHHHHhhcCCCcEEEEeecC
Q 008738 101 IAGRIRELAFLNPKLTIALRKED 123 (555)
Q Consensus 101 l~~Rl~elA~Ln~gl~I~l~der 123 (555)
|++-++..|-.. +.-|+|+.++
T Consensus 196 i~~lvkkys~fi-~~PI~l~~~k 217 (269)
T 1qy5_A 196 IKNLVKKYSQFI-NFPIYVWSSK 217 (269)
T ss_dssp HHHHHHTTCTTC-SSCEEEEEEC
T ss_pred HHHHHHhhhccc-ceeeEEeeee
Confidence 655555555222 3568887765
No 38
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=39.00 E-value=1.2e+02 Score=33.46 Aligned_cols=89 Identities=13% Similarity=0.297 Sum_probs=55.4
Q ss_pred eEEEEEEeecCCCC----CceeeeeeCcccc-CCCCcchHHHHHHHHHHHHHHH-HhcccCCCCCCCCCHhhhh-cccEE
Q 008738 167 ITIDLALQWCSDAY----SDTMLGYANSIRT-IDGGTHIEGVKASLTRTLNSLG-KKSKTVKDKDISLSGEHVR-EGLTC 239 (555)
Q Consensus 167 ~~veval~~s~~~~----~~~~~SFVN~I~T-~~GGTHv~g~~~al~~~in~~~-kk~~~~k~k~~~i~~~dIr-egL~~ 239 (555)
..||+|+.|. +.- .-.++-|+|-||- .+.|. .++++++...- +..++-... ..+- .-+.+
T Consensus 353 fivE~~ia~g-g~~~~~~~~~~~rfanrvpll~~~g~------~~~t~~~~~~~w~~y~~~~~~------~~~p~~~~~~ 419 (621)
T 2q2e_B 353 FVVEVGMAYG-GNLPKEEKISIMRFANRVPLLYQQGG------CVTTHAVEDIKWKQYGLNQPG------GGIPVGPVIL 419 (621)
T ss_dssp EEEEEEEEES-SSSCSSSCCCEEEEETTBCCCSCCTT------CHHHHHHHHSCCTTTTCCCCS------SSSCCSSCCE
T ss_pred eEEEEeeecC-CCCCCCCceeEEEEccCCceeecCCc------cHHHHHHHhCChhhcCcCCCC------CCCCCCCEEE
Confidence 5689999997 222 2369999999986 34454 34566664332 122221110 0011 13689
Q ss_pred EEEEeecCCCCCCccccccCC-hhhhhhhh
Q 008738 240 IISVRVPNPEFEGQTKTRLGN-PEVRKVVD 268 (555)
Q Consensus 240 ~vsv~i~nP~FegQTKekL~n-~~v~~~v~ 268 (555)
+|++-.++--|.|-.|+...+ ||+..-+.
T Consensus 420 ~v~~~st~vp~~~~~ke~ia~~~ei~~ei~ 449 (621)
T 2q2e_B 420 LIHVASINVPFTSESKDAIADIPVIKEEID 449 (621)
T ss_dssp EEEEECSSCCBSSSSSSSBCCCHHHHHHHH
T ss_pred EEEEeecCCCcCCcchhhhcCCHHHHHHHH
Confidence 999999999999999999985 45444333
No 39
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=34.04 E-value=80 Score=31.02 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=48.5
Q ss_pred ccccCCcchhhhhhhcceeEEEEEeCCEEEEEEecCCcCCccceeecc---CCCCCCCCceEEEEEeCcccccccccCCH
Q 008738 22 SGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVL---PVDSKDRQGTRIRFWPDKQVFTTAIQFDH 98 (555)
Q Consensus 22 sGGlhGvGasvvNalS~~f~V~v~r~gk~y~q~f~~G~~~~~~~~~~~---~~~~~~~~GT~V~F~PD~~iF~~~~~~~~ 98 (555)
.-|+-|||...+=.++..++|.+..++..|..+...+.. -.+...+. +.+....+||+|+.....+--. -++.
T Consensus 174 ~IGqFGVGFySaFmVAdkV~V~Sk~dd~~~~WeS~g~gs-fti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e---~le~ 249 (272)
T 3ied_A 174 LIGQFGVGFYSSFLVSNRVEVYTKKEDQIYRWSSDLKGS-FSVNEIKKYDQEYDDIKGSGTKIILHLKEECDE---YLED 249 (272)
T ss_dssp CGGGSCCGGGGGGGTEEEEEEEEESSSCEEEEEECSSSE-EEEEECTTCTTCC--CCSSEEEEEEEECGGGGG---GGSH
T ss_pred ccCcccceeheeeccCCEEEEEEcCCCceEEEEECCCCC-EEEEECcccccccCCCCCCCcEEEEEECCChHH---hcCH
Confidence 469999999998888999999998666666655443221 11111100 0123457899998876543210 1234
Q ss_pred HHHHHHHHHHh
Q 008738 99 NTIAGRIRELA 109 (555)
Q Consensus 99 ~~l~~Rl~elA 109 (555)
..|+.-++..+
T Consensus 250 ~~ik~likkys 260 (272)
T 3ied_A 250 YKLKELIKKYS 260 (272)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 45555554443
No 40
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=32.21 E-value=1.2e+02 Score=32.86 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=54.1
Q ss_pred eccccCCcchhhhhhhcceeEEEEEeCC----EEEEEEecCCcCCccceeeccCCCCCCCCceEEEEEeCcccccccccC
Q 008738 21 VSGGLHGVGLSVVNALSESLEVTVWRDG----MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQF 96 (555)
Q Consensus 21 ~sGGlhGvGasvvNalS~~f~V~v~r~g----k~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~ 96 (555)
.+-|.-|||..-+=+++..++|.++..| .-|..+...|.. -.+.. .....+||+|+....... ..-+
T Consensus 118 ~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~-~~i~~-----~~~~~~GT~I~L~Lk~d~---~Efl 188 (559)
T 1y4s_A 118 QLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE-YTVAD-----ITKEDRGTEITLHLREGE---DEFL 188 (559)
T ss_dssp CCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSE-EEEEE-----ECCCSCEEEEEEEECTTC---GGGS
T ss_pred cccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCe-eEEeE-----CCCCCCCeEEEEEEcchh---hhcc
Confidence 4679999999888888999999998765 234444443321 11111 113468999988753321 1113
Q ss_pred CHHHHHHHHHHHh--hcCCCcEE
Q 008738 97 DHNTIAGRIRELA--FLNPKLTI 117 (555)
Q Consensus 97 ~~~~l~~Rl~elA--~Ln~gl~I 117 (555)
+...|+.-++..| .-+| +.+
T Consensus 189 e~~~I~~iv~kys~fi~~P-I~~ 210 (559)
T 1y4s_A 189 DDWRVRSIISKYSDHIALP-VEI 210 (559)
T ss_dssp CHHHHHHHHHHHHTTCSSC-EEE
T ss_pred hHHHHHHHHHHHhccCCCc-eEE
Confidence 4667787788888 3457 555
No 41
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=31.77 E-value=11 Score=32.61 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=40.6
Q ss_pred ceeeEEEeecCCCCCcchHHhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEeeCHHHHHHHHHhCCCCCCccce
Q 008738 407 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQ 486 (555)
Q Consensus 407 RYgkiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~tPl~kv~~gk~~~~~~s~~e~~~~~~~~~~~~~~~i~ 486 (555)
.+..|||+||.|.=|.-||..|...| |. ..|.|+...|. | .---+.++..+.+.... ......
T Consensus 49 ~~r~VIi~TD~D~~GekIRk~i~~~l----p~---~~hafi~r~~~-----g---VE~a~~~~I~~aL~~~~--~~~~~~ 111 (119)
T 2fcj_A 49 EGYDVYLLADADEAGEKLRRQFRRMF----PE---AEHLYIDRAYR-----E---VAAAPIWHLAQVLLRAR--FDVRIE 111 (119)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHC----TT---SEEECCCTTTC-----S---TTTSCHHHHHHHHHHTT--CCBCGG
T ss_pred cCCCEEEEECCCccHHHHHHHHHHHC----CC---CcEEeccCCcc-----C---cccCCHHHHHHHHHhcc--cchhhh
Confidence 46789999999999999998875443 33 35777777774 2 11135566666665532 122233
Q ss_pred ee-ecccc
Q 008738 487 RF-KGLGE 493 (555)
Q Consensus 487 ry-KGLGe 493 (555)
|. ||-||
T Consensus 112 ~~~~~~~~ 119 (119)
T 2fcj_A 112 SLMRGRGE 119 (119)
T ss_dssp GTC-----
T ss_pred hhhcccCC
Confidence 33 66654
No 42
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=23.06 E-value=1.3e+02 Score=33.23 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=53.9
Q ss_pred eccccCCcchhhhhhhcceeEEEEEeCC----EEEEEEecCCcCCccceeeccCCCCCCCCceEEEEEeCcccccccccC
Q 008738 21 VSGGLHGVGLSVVNALSESLEVTVWRDG----MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQF 96 (555)
Q Consensus 21 ~sGGlhGvGasvvNalS~~f~V~v~r~g----k~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~ 96 (555)
.+-|.-|||..-+=++|..++|.++..| .-|..+...|.. -..... ....+||+|+....... ..-+
T Consensus 118 ~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~-~~i~~~-----~~~~~GT~I~L~Lk~d~---~Efl 188 (624)
T 2ioq_A 118 QLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE-YTVADI-----TKEDRGTEITLHLREGE---DEFL 188 (624)
T ss_dssp THHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSC-CEEEEE-----CCSSSEEEEEEEECTTC---GGGG
T ss_pred cccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCe-EEEEEC-----CCCCCCeEEEEEEcchh---hhcc
Confidence 3578899999888899999999998765 234444443322 122111 13468999988743321 1113
Q ss_pred CHHHHHHHHHHHh--hcCCCcEE
Q 008738 97 DHNTIAGRIRELA--FLNPKLTI 117 (555)
Q Consensus 97 ~~~~l~~Rl~elA--~Ln~gl~I 117 (555)
+...|+.-++..| .-+| +.+
T Consensus 189 ~~~~i~~ivkkys~fi~~P-I~~ 210 (624)
T 2ioq_A 189 DDWRVRSIISKYSDHIALP-VEI 210 (624)
T ss_dssp CHHHHHHHHHHHHTTCSSC-EEE
T ss_pred hHHHHHHHHHHHhccCCCc-eEE
Confidence 4667777777777 3457 544
No 43
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=22.70 E-value=1.5e+02 Score=32.80 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=47.3
Q ss_pred eccccCCcchhhhhhhcceeEEEEEeCC-EEEEEEecCCcCCccceeeccCCCCCCCCceEEEEEeCcccccccccCCHH
Q 008738 21 VSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHN 99 (555)
Q Consensus 21 ~sGGlhGvGasvvNalS~~f~V~v~r~g-k~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~~~~ 99 (555)
..-|.-|||...+=.++.+++|.++..| .-|..+...|.. .+.. .+.+....+||+|+....... +.-++..
T Consensus 139 ~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~gg~~--ti~~--~~~~~~~~~GT~I~L~Lk~d~---~Efle~~ 211 (666)
T 2o1u_A 139 ELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF--SVIA--DPRGNTLGRGTTITLVLKEEA---SDYLELD 211 (666)
T ss_dssp -------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSCC--EEEE--CTTCCSSSSEEEEEEEECTTT---TTSSSTT
T ss_pred hhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeCCeE--EEEe--cccCCCCCCCeEEEEEEccch---hhhccHH
Confidence 3568999999888888899999998754 223333332222 1211 111123468999988743321 1012455
Q ss_pred HHHHHHHHHh-hc-CCCcEEEEee
Q 008738 100 TIAGRIRELA-FL-NPKLTIALRK 121 (555)
Q Consensus 100 ~l~~Rl~elA-~L-n~gl~I~l~d 121 (555)
.|+.-++..| |+ +| |.|.+
T Consensus 212 ~I~~ivkkys~fi~~P---I~~~~ 232 (666)
T 2o1u_A 212 TIKNLVKKYSQFINFP---IYVWS 232 (666)
T ss_dssp HHHHHHHHHSTTCCSC---EEEEE
T ss_pred HHHHHHHHHHhhCCCc---eEEec
Confidence 6777777777 33 46 66644
No 44
>3rkc_A Capsid protein; viral protein; 1.79A {Hepatitis e virus} PDB: 3rkd_A 3ggq_A
Probab=20.37 E-value=22 Score=30.83 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=12.3
Q ss_pred CceeecccCccccccccc
Q 008738 357 RFQAILPLRGKILNVERK 374 (555)
Q Consensus 357 ~~qai~PLrGKiLNv~ka 374 (555)
..+.+|||||||- ++.+
T Consensus 76 ~~f~~LPl~GK~s-fw~~ 92 (148)
T 3rkc_A 76 KTFFVLPLRGKLS-FWEA 92 (148)
T ss_dssp EEEEEEEEEEEEE-EEET
T ss_pred cEEEEeecCCccc-hhhc
Confidence 3478999999974 4443
Done!