BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008741
(555 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FPS3|UBP24_ARATH Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana
GN=UBP24 PE=1 SV=1
Length = 551
Score = 580 bits (1494), Expect = e-164, Method: Compositional matrix adjust.
Identities = 325/569 (57%), Positives = 394/569 (69%), Gaps = 32/569 (5%)
Query: 1 MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSL 60
MS+ K+FVFGSFTE ETRS+ + +KP + K +QFGSLN E+S
Sbjct: 1 MSEKKVFVFGSFTEHETRSFFE-------QKPTKDPQNSKDKCVGSIQFGSLNLAAENSS 53
Query: 61 VGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDL-----GAVGCPK---ENG 112
V T E K DG V S + S +ND D ++ P+ +NG
Sbjct: 54 VNTNGELK-KGEADGTVKSAGSQERLDASRPASSDKNNDSDAKLPRKNSLRVPEHVVQNG 112
Query: 113 HIKN-STNGPALSNGVNHLKADGIDFSSFHQNAGGHANP---SPISKFHVLCDGNIDGRD 168
IK S + +L+NGV +K D I + + G ++P + SKF L D D
Sbjct: 113 IIKEISESNKSLNNGV-AVKTDPIGLDNLSM-SDGESDPVYKASSSKFQAL-----DNED 165
Query: 169 QNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQ 228
++ + + SI K +K E V VKD PRGLIN+GNLCFLNATLQAL+SCSPFVQ
Sbjct: 166 FSSDSSSGSIQRKKN--LKVPTESVPPVKDFTPRGLINAGNLCFLNATLQALLSCSPFVQ 223
Query: 229 LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLK 288
LLQ+++ +DIPKA PTL AF F+S+ D PS SS + N++V++ GRPF P+MFE VL+
Sbjct: 224 LLQKIQLQDIPKADSPTLAAFSEFISELDVPSS-SSIRNNVTVVEAGRPFRPAMFEGVLR 282
Query: 289 NFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEED-- 346
NFTPDV N++SGRPRQEDAQEFLSFIMDQMHDELLKL+ +S + + ++++S A +D
Sbjct: 283 NFTPDVLNNMSGRPRQEDAQEFLSFIMDQMHDELLKLKEQSPKVTASKSSVISSANDDGD 342
Query: 347 EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSE 406
EWETVGPKNKSAVTRTQSF+PS LS+IFGGQLKSVVKA+G KASATVQP+LLLHLDI+ +
Sbjct: 343 EWETVGPKNKSAVTRTQSFVPSELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPD 402
Query: 407 AVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQG 466
V IEDAL LFSA E+LEGYR S TG GVV+A KS+KIQ LSKI+ILHLMRFSYGSQG
Sbjct: 403 GVQGIEDALHLFSAQEDLEGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQG 462
Query: 467 STKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQW 526
STKL K V+FPL+L L R LV+ S E +YELVAT+THHG DPSKGHYT DAR N QW
Sbjct: 463 STKLRKGVKFPLELNLNRSHLVSLSNESLRYELVATITHHGWDPSKGHYTTDARRKNGQW 522
Query: 527 LHFDDASVTAIGTSKVLHDQAYVLFYKQV 555
L FDDASVT IGT VLHDQAYVLFYKQV
Sbjct: 523 LRFDDASVTPIGTKLVLHDQAYVLFYKQV 551
>sp|Q7ZXR7|UB10B_XENLA Ubiquitin carboxyl-terminal hydrolase 10-B OS=Xenopus laevis
GN=usp10-b PE=2 SV=1
Length = 805
Score = 242 bits (618), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 145/405 (35%), Positives = 223/405 (55%), Gaps = 47/405 (11%)
Query: 186 MKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAG 242
+K +++PV L PRGLIN GN C++NATLQAL++C P L++ + P
Sbjct: 410 VKLVHKPVS----LQPRGLINKGNWCYINATLQALVACPPMYHLMKSIPVYTKAQRPCTS 465
Query: 243 YPTLTAFVGFVSDF-DTPSGGSSKK----KNISVLDIGRPFSPSMFEAVLKNFTPDVPNS 297
P + +FV +++F + P +K+ K I + G PF P+ +L F +S
Sbjct: 466 TPMIDSFVRLMNEFTNMPILPKAKQAPGEKVIKDIRPGAPFEPTYIYRLLTVFK----SS 521
Query: 298 ISGRPRQEDAQEFLSFIMDQMHDELLKL------QGESTSINGANTALVSLAE------- 344
+S + RQEDA+E+L FI++ +H+E+L L Q + IN + + E
Sbjct: 522 LSEKGRQEDAEEYLGFILNGLHEEMLALKKLLLPQNDQIHINNCPNPVSGVEEVNKEEQE 581
Query: 345 --EDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLD 402
++EWE VGP+NKS+VTR F+ + ++DIFGG ++SVV Q +K SAT+QPF L LD
Sbjct: 582 GSDEEWEQVGPRNKSSVTRQADFVQTPITDIFGGHMRSVVYQQSSKESATLQPFFTLQLD 641
Query: 403 IYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY 462
I SE + T++DAL A E+++GY T + + + V ++ L +L+LHL RF +
Sbjct: 642 IQSEKIRTVQDALESLVARESVQGYTTKTKQEVEIC---RRVTLEELPPVLVLHLKRFVF 698
Query: 463 -GSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGHY 515
+ G KL K++ +P+ L + +DLL +P + R Y L A V HHG + GHY
Sbjct: 699 EKTGGCQKLIKNIEYPVDLEVSKDLL-SPGVKSKIFKGQRTYRLFAVVYHHGNSATGGHY 757
Query: 516 TADARYFN-DQWLHFDDASVTAIGTSKVLHD----QAYVLFYKQV 555
T D + WL DD SV I +V+ AY+L+Y++V
Sbjct: 758 TTDVFQIGLNGWLRIDDQSVKVINQYQVVKQTVERTAYLLYYRRV 802
>sp|Q2NL57|UB10A_XENLA Ubiquitin carboxyl-terminal hydrolase 10-A OS=Xenopus laevis
GN=usp10-a PE=2 SV=1
Length = 791
Score = 240 bits (612), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 222/406 (54%), Gaps = 49/406 (12%)
Query: 186 MKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAG 242
+K +++PV L PRGLIN GN C++NATLQAL++C P L++ + P
Sbjct: 396 VKLVHKPVS----LQPRGLINKGNWCYINATLQALVACPPMYHLMKSIPVYTKAQKPCTS 451
Query: 243 YPTLTAFVGFVSDFDT----PSGGSSKKKNISVLDI--GRPFSPSMFEAVLKNFTPDVPN 296
P + +FV +++F P + + + V DI G PF P+ +L F +
Sbjct: 452 TPMIDSFVRLMNEFTNMPILPKAKQAPGEKV-VRDIRPGAPFEPAYIYRLLTVFK----S 506
Query: 297 SISGRPRQEDAQEFLSFIMDQMHDELLKL------QGESTSINGANTALVSLAE------ 344
S+S + RQEDA+E+L FI++ +H+E+L L Q + IN + + E
Sbjct: 507 SLSEKGRQEDAEEYLGFILNGLHEEMLALKKLLLPQNDKIHINNGPDPVFATEEVNKEEQ 566
Query: 345 ---EDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHL 401
++EWE VGP+NKS+VTR F+ + ++DIFGG ++SVV Q +K SAT+QPF L L
Sbjct: 567 EGSDEEWEQVGPRNKSSVTRQADFVQTPITDIFGGHMRSVVYQQSSKESATLQPFFTLQL 626
Query: 402 DIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFS 461
DI SE + T++DAL A E+++GY T + + + V ++ L +L+LHL RF
Sbjct: 627 DIQSEKIRTVQDALESLVARESVQGYTTKTKQEVEIC---RRVTLEELPPVLVLHLKRFV 683
Query: 462 Y-GSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGH 514
+ + G KL K++ +P+ L + +DLL +P + R Y L A V HHG + GH
Sbjct: 684 FEKTGGCQKLIKNIEYPVDLEISKDLL-SPGVKSKIFKGQRTYRLFAVVYHHGNSATGGH 742
Query: 515 YTADARYFN-DQWLHFDDASVTAIGTSKVLHD----QAYVLFYKQV 555
YT D + WL DD +V I +V+ AY+L+Y++V
Sbjct: 743 YTTDVFQIGLNGWLRIDDQTVKVINQYQVVKQTVERTAYLLYYRRV 788
>sp|Q6DIJ4|UBP10_XENTR Ubiquitin carboxyl-terminal hydrolase 10 OS=Xenopus tropicalis
GN=usp10 PE=2 SV=1
Length = 805
Score = 238 bits (608), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 143/405 (35%), Positives = 223/405 (55%), Gaps = 47/405 (11%)
Query: 186 MKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAG 242
+K +++PV L PRGLIN GN C++NATLQAL++C P L++ + P
Sbjct: 410 VKLVHKPVS----LQPRGLINKGNWCYINATLQALVACPPMYHLMKSIPVYTKAQRPCTS 465
Query: 243 YPTLTAFVGFVSDF-DTP----SGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNS 297
P + +FV +++F + P + +S +K I + G PF P+ +L F +S
Sbjct: 466 TPMIDSFVRLMNEFTNMPILPKAKQASGEKVIRDIRPGAPFEPAYIYRLLTVFK----SS 521
Query: 298 ISGRPRQEDAQEFLSFIMDQMHDELLKL------QGESTSINGANTALVSLAE------- 344
+S + RQEDA+E+L FI++ +H+E+L L Q + IN + E
Sbjct: 522 LSEKGRQEDAEEYLGFILNGLHEEMLSLKKLLLPQNDKIHINNGPDPVSEKEEINKDEQE 581
Query: 345 --EDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLD 402
++EWE VGP++KS+VTR F+ + ++DIFGG ++SVV Q +K SAT+QPF L LD
Sbjct: 582 GSDEEWEQVGPRHKSSVTRQADFVQTPITDIFGGHMRSVVYQQSSKESATLQPFFTLQLD 641
Query: 403 IYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY 462
I SE + T++DAL A E+++GY T + + + V ++ L +L+LHL RF +
Sbjct: 642 IQSEKIRTVQDALESLVARESVQGYTTKTKQEVEIC---RRVTLEELPPVLVLHLKRFVF 698
Query: 463 -GSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGHY 515
+ G KL K++ +P+ L + +DLL +P + R Y L A V HHG + GHY
Sbjct: 699 EKTGGCQKLIKNIEYPVDLEISKDLL-SPGVKSKIFKGQRTYRLFAVVYHHGNSATGGHY 757
Query: 516 TADARYFN-DQWLHFDDASVTAIGTSKVLHD----QAYVLFYKQV 555
T D + WL DD +V I +V+ AY+L+Y++V
Sbjct: 758 TTDVFQIGLNGWLRIDDQTVKVINQYQVVKQTVERTAYLLYYRRV 802
>sp|Q5ZJN4|UBP10_CHICK Ubiquitin carboxyl-terminal hydrolase 10 OS=Gallus gallus GN=USP10
PE=2 SV=1
Length = 785
Score = 233 bits (593), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 218/406 (53%), Gaps = 48/406 (11%)
Query: 186 MKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQEL---RTRDIPKAG 242
+K +++PV L PRGLIN GN C++NATLQAL++C P L++ + P
Sbjct: 389 VKLVHKPVS----LQPRGLINKGNWCYINATLQALVACPPMYHLMKSIPMYSKSQRPCTS 444
Query: 243 YPTLTAFVGFVSDFD---TPSGGSSKKKNISVLDI--GRPFSPSMFEAVLKNFTPDVPNS 297
P + +FV +++F P + V DI G F P+ +L + +S
Sbjct: 445 TPMIDSFVRLMNEFTNMPVPPKAKQALGDKIVRDIRPGAAFEPTYIYRLLTV----IKSS 500
Query: 298 ISGRPRQEDAQEFLSFIMDQMHDELLKLQ------GESTSI-NGANTALV---------S 341
+S + RQEDA+E+L FI++ +H+E+L L+ E S+ NG V
Sbjct: 501 LSEKGRQEDAEEYLGFILNGLHEEMLTLKKLLSPHNEKLSVSNGPEVQTVREEEEQDEQG 560
Query: 342 LAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHL 401
EDEWE VGP+NKS+VTR F+ + ++DIFGG ++SVV Q +K SAT+QPF L L
Sbjct: 561 EGSEDEWEQVGPRNKSSVTRQADFVQTPITDIFGGHIRSVVYQQSSKESATLQPFFTLQL 620
Query: 402 DIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFS 461
DI S+ + T++DAL A E+++GY T + V + V ++ L +L+LHL RF
Sbjct: 621 DIQSDKIRTVQDALESLVARESVQGYTTKTKQE---VEISRRVTLEELPPVLVLHLKRFV 677
Query: 462 Y-GSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGH 514
Y + G KL K++ +P+ L + ++LL +P + R Y L A V HHG + H
Sbjct: 678 YEKTGGCQKLIKNIEYPVDLEISKELL-SPGVKSKIFKGQRTYRLFAVVYHHGNSATGDH 736
Query: 515 YTADARYFN-DQWLHFDDASVTAIGTSKVL----HDQAYVLFYKQV 555
YT D + WL DD +V I +V+ AY+L+Y++V
Sbjct: 737 YTTDVFQIGLNGWLRIDDQAVKVINQYQVVKPSAERTAYLLYYRRV 782
>sp|Q3KR59|UBP10_RAT Ubiquitin carboxyl-terminal hydrolase 10 OS=Rattus norvegicus
GN=Usp10 PE=2 SV=1
Length = 794
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 216/392 (55%), Gaps = 43/392 (10%)
Query: 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQ--ELRTR-DIPKAGYPTLTAFVGFVSD 255
L PRGLIN GN C++NATLQAL++C P L++ L ++ P P + +FV +++
Sbjct: 408 LQPRGLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQRPCTSTPMIDSFVRLMNE 467
Query: 256 FD---TPSGGSSKKKNISVLDI--GRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEF 310
F P + V DI G F P+ +L + +S+S + RQEDA+E+
Sbjct: 468 FTNMPVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTV----IKSSLSEKGRQEDAEEY 523
Query: 311 LSFIMDQMHDELLKLQG------ESTSI-NGANTALVSLAE--------EDEWETVGPKN 355
L FI++ +H+E+L L+ E S+ NG + L+ E EDEWE VGPKN
Sbjct: 524 LGFILNGLHEEMLSLKKLLSPTHEKHSVSNGPGSHLIEDEELEDTGEGSEDEWEQVGPKN 583
Query: 356 KSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDAL 415
K++VTR F+ + ++ IFGG ++SVV Q +K SAT+QPF L LDI S+ + T++DAL
Sbjct: 584 KTSVTRQADFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQSDKIRTVQDAL 643
Query: 416 RLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY-GSQGSTKLHKSV 474
A E+++GY T + V + V ++ L +L+LHL RF Y + G KL K++
Sbjct: 644 ESLVARESVQGYTTKTKQE---VEVSRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLVKNI 700
Query: 475 RFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGHYTADARYFN-DQWL 527
+P+ L + R+LL +P + R Y L A V HHG + GHYT D + WL
Sbjct: 701 EYPVDLEISRELL-SPGVKNKNFKCHRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWL 759
Query: 528 HFDDASVTAIGTSKVLHDQ----AYVLFYKQV 555
DD +V I +V+ AY+L+Y++V
Sbjct: 760 RIDDQTVKVINQYQVVRPSADRTAYLLYYRRV 791
>sp|P52479|UBP10_MOUSE Ubiquitin carboxyl-terminal hydrolase 10 OS=Mus musculus GN=Usp10
PE=1 SV=3
Length = 792
Score = 225 bits (574), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 145/402 (36%), Positives = 220/402 (54%), Gaps = 47/402 (11%)
Query: 189 INEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQ--ELRTR-DIPKAGYPT 245
I++PV L PRGLIN GN C++NATLQAL++C P L++ L ++ P P
Sbjct: 400 IHKPVS----LQPRGLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQRPCTSTPM 455
Query: 246 LTAFVGFVSDFD---TPSGGSSKKKNISVLDI--GRPFSPSMFEAVLKNFTPDVPNSISG 300
+ +FV +++F P + V DI G F P+ +L + +S+S
Sbjct: 456 IDSFVRLMNEFTNMPVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTV----IKSSLSE 511
Query: 301 RPRQEDAQEFLSFIMDQMHDELLKLQG------ESTSI-NGANTALVSLAE--------E 345
+ RQEDA+E+L FI++ +H+E+L L+ E S+ NG + L+ E E
Sbjct: 512 KGRQEDAEEYLGFILNGLHEEMLSLKKLLSPTHEKHSVSNGPRSDLIEDEELEDTGKGSE 571
Query: 346 DEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYS 405
DEWE VGPKNK+++TR F+ + ++ IFGG ++SVV Q +K SAT+Q F L LDI S
Sbjct: 572 DEWEQVGPKNKTSITRQADFVQTPITGIFGGHIRSVVYQQSSKESATLQLFFTLQLDIQS 631
Query: 406 EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY-GS 464
+ + T++DAL A E+++GY T + V + V ++ L +L+LHL RF Y +
Sbjct: 632 DKIRTVQDALESLVARESVQGYTTKTKQE---VEVSRRVTLEKLPPVLVLHLKRFVYEKT 688
Query: 465 QGSTKLHKSVRFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGHYTAD 518
G KL K++ +P+ L + R+LL +P + R Y L A V HHG + GHYT D
Sbjct: 689 GGCQKLVKNIDYPVDLEISRELL-SPGIKNKNFKCQRTYRLFAVVYHHGNSATGGHYTTD 747
Query: 519 ARYFN-DQWLHFDDASVTAIGTSKVLHD----QAYVLFYKQV 555
+ WL DD +V I +V+ AY+L+Y++V
Sbjct: 748 VFQIGLNGWLRIDDQTVKVINQYQVVKPPADRTAYLLYYRRV 789
>sp|Q14694|UBP10_HUMAN Ubiquitin carboxyl-terminal hydrolase 10 OS=Homo sapiens GN=USP10
PE=1 SV=2
Length = 798
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/402 (35%), Positives = 216/402 (53%), Gaps = 47/402 (11%)
Query: 189 INEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQ--ELRTR-DIPKAGYPT 245
I++PV L PRGLIN GN C++NATLQAL++C P L++ L ++ P P
Sbjct: 406 IHKPVS----LQPRGLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQRPCTSTPM 461
Query: 246 LTAFVGFVSDFD---TPSGGSSKKKNISVLDI--GRPFSPSMFEAVLKNFTPDVPNSISG 300
+ +FV +++F P + V DI G F P+ +L +S+S
Sbjct: 462 IDSFVRLMNEFTNMPVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTVNK----SSLSE 517
Query: 301 RPRQEDAQEFLSFIMDQMHDELLKLQG---------------ESTSINGANTALVSLAEE 345
+ RQEDA+E+L FI++ +H+E+L L+ ++ S+N E
Sbjct: 518 KGRQEDAEEYLGFILNGLHEEMLNLKKLLSPSNEKLTISNGPKNHSVNEEEQEEQGEGSE 577
Query: 346 DEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYS 405
DEWE VGP+NK++VTR F+ + ++ IFGG ++SVV Q +K SAT+QPF L LDI S
Sbjct: 578 DEWEQVGPRNKTSVTRQADFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQS 637
Query: 406 EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY-GS 464
+ + T++DAL A E+++GY T + V + V ++ L +L+LHL RF Y +
Sbjct: 638 DKIRTVQDALESLVARESVQGYTTKTKQE---VEISRRVTLEKLPPVLVLHLKRFVYEKT 694
Query: 465 QGSTKLHKSVRFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGHYTAD 518
G KL K++ +P+ L + ++LL +P + R Y L A V HHG + GHYT D
Sbjct: 695 GGCQKLIKNIEYPVDLEISKELL-SPGVKNKNFKCHRTYRLFAVVYHHGNSATGGHYTTD 753
Query: 519 ARYFN-DQWLHFDDASVTAIGTSKVL----HDQAYVLFYKQV 555
+ WL DD +V I +V+ AY+L+Y++V
Sbjct: 754 VFQIGLNGWLRIDDQTVKVINQYQVVKPTAERTAYLLYYRRV 795
>sp|A5PJS6|UBP10_BOVIN Ubiquitin carboxyl-terminal hydrolase 10 OS=Bos taurus GN=USP10
PE=2 SV=1
Length = 800
Score = 218 bits (555), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 139/402 (34%), Positives = 213/402 (52%), Gaps = 47/402 (11%)
Query: 189 INEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAGYPT 245
I++PV L PRGLIN GN C++NATLQAL++C P L++ + P P
Sbjct: 408 IHKPVS----LQPRGLINKGNWCYINATLQALVACPPMYHLMKLIPLYSKVQRPCTSTPM 463
Query: 246 LTAFVGFVSDFD---TPSGGSSKKKNISVLDI--GRPFSPSMFEAVLKNFTPDVPNSISG 300
+ +FV +++F P + V DI G F P+ +L + +S+S
Sbjct: 464 IDSFVRLMNEFTNMPVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTV----IKSSLSE 519
Query: 301 RPRQEDAQEFLSFIMDQMHDELLKLQG---------------ESTSINGANTALVSLAEE 345
+ RQEDA+E+L FI++ +H+E+L L+ +S S+N E
Sbjct: 520 KGRQEDAEEYLGFILNGLHEEMLNLKKLLSPNNDKLTISNGPKSHSVNEDEQEEPGEGSE 579
Query: 346 DEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYS 405
DEWE VGP+NK++VTR F+ + ++ IFGG ++SVV Q +K SAT+QPF L LDI S
Sbjct: 580 DEWEQVGPRNKTSVTRQADFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQS 639
Query: 406 EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY-GS 464
+ + T++DAL A E+++GY T + V + V ++ L +L+LHL RF Y +
Sbjct: 640 DKIRTVQDALESLVARESVQGYTTKTRQE---VEISRRVTLEKLPPVLVLHLKRFVYEKT 696
Query: 465 QGSTKLHKSVRFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGHYTAD 518
G KL K++ +P+ L + ++LL +P + R Y L A V HHG + GHYT D
Sbjct: 697 GGCQKLIKNIEYPVDLEISKELL-SPGVKNKNFKCHRTYRLFAVVYHHGSSATGGHYTTD 755
Query: 519 ARYFN-DQWLHFDDASVTAIGTSK----VLHDQAYVLFYKQV 555
+ WL DD +V + + AY+L+Y++V
Sbjct: 756 VFQIGLNGWLRIDDQTVKVVSQQQVVRPAAERTAYLLYYRRV 797
>sp|O96612|UBPB_DICDI Ubiquitin hydrolase B OS=Dictyostelium discoideum GN=ubpB PE=1 SV=1
Length = 451
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/269 (40%), Positives = 156/269 (57%), Gaps = 18/269 (6%)
Query: 296 NSISGRPRQEDAQEFLSFIMDQMHDELLKL------QGESTSINGANTALVSLAEEDEWE 349
NS+ Q+DAQEFL F++D +H+E L L E +T++V +D WE
Sbjct: 191 NSLPQTICQQDAQEFLVFLLDLIHEEFLTLIKDIDIPKEDDKSTPTSTSIV----DDNWE 246
Query: 350 TVGPKNKSAV-TRTQSFLP-SALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEA 407
VG K K+A+ T +Q LP + +S IF G L+S G+K S TV+PF LHLDI E
Sbjct: 247 VVGKKGKTAIITNSQQELPKTPISQIFSGVLRSSFNRTGSKESITVEPFYCLHLDIRPEE 306
Query: 408 VHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGS 467
++++EDAL+ F PE +EGY T ST ++A KS ++L +ILI+H RF++ S S
Sbjct: 307 INSLEDALKFFMKPEIIEGY-TCSTKKIE-ISASKSWSFESLPRILIVHFKRFAFESDTS 364
Query: 468 TKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFND-QW 526
KL K +RFP QL L + +KY L + V+HHGR S+GHYT D QW
Sbjct: 365 KKLDKLIRFPTQLSLST---ASNHQTQKKYSLFSVVSHHGRGLSQGHYTCDIYQPQQAQW 421
Query: 527 LHFDDASVTAIGTSKVLHDQAYVLFYKQV 555
+ +DD++ T + VL+ +AY+L Y+ V
Sbjct: 422 IRYDDSTFTEVKEQDVLNREAYLLLYQLV 450
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 202 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAG-YPTLTAFVGFVSDF 256
RGLIN+ N CF+N LQ+L C F+++++ L D+ G YPTL +F F +++
Sbjct: 19 RGLINTSNTCFMNVILQSLTGCQLFLRVIKNL--SDLEDLGKYPTLHSFNQFYTEY 72
>sp|O94269|UBP3_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp3 PE=3 SV=1
Length = 512
Score = 179 bits (453), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 216/455 (47%), Gaps = 84/455 (18%)
Query: 151 SPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNL 210
SP+ K H + + + NSS+ E +++ P + + PRG IN+GN+
Sbjct: 89 SPVKKSHSVP---VPSDRSEKKSFNSSLGELIETYSPSLDAP----RPIQPRGFINTGNI 141
Query: 211 CFLNATLQALMSCSPFVQLLQELRTRDIP---KAGYPTLTAFVGFVSDFDTPSGGSSKKK 267
CF+N+ LQALM C PF LL+++ R +P + P + + DF
Sbjct: 142 CFMNSILQALMYCVPFYNLLKQI-NRMVPYNFERTTPLIESLTMLSRDF----------- 189
Query: 268 NISVLDIGRPFSPSMFEAVLKNFTPDVPNSIS-GRPR--------QEDAQEFLSFIMDQM 318
R +S F+ + P+V S + G PR QEDA+EFL+ +D++
Sbjct: 190 --------REYS-EKFDLQGDSILPEVVYSATKGNPRFEMLQTGEQEDAEEFLNLFLDEL 240
Query: 319 HDELLK------LQGESTSI-------NGANTALVSL-----AEEDEWETVGPKNKSAVT 360
H+E ++ L+ + + NG + L S E W VG K +
Sbjct: 241 HEEFVRERRHYLLKNDERNPKSDIKISNGIKSGLDSFDDQSSVEASGWTEVGKNKKPVIA 300
Query: 361 RTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSA 420
R+ + S +S IFGGQL+S ++ + S ++PF L LDI +E +H++ DAL +A
Sbjct: 301 RSATVERSPISQIFGGQLRSTLRVPSARDSVLLEPFQPLQLDIQAEDIHSVIDALEHMTA 360
Query: 421 PENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST-KLHKSVRFPLQ 479
PE L + SS GN VTA K + I++L +LILHL RF Y + G T K +K + +P +
Sbjct: 361 PEILPEWH-SSKGN---VTATKQMYIESLPPVLILHLKRFFYEASGGTQKNYKPIAYPAR 416
Query: 480 LVLGRDLLVTPSAEGR---KYELVATVTHHGRDPSKGHYTADARYFNDQ-WLHFDDASVT 535
L + +++ +PS G +Y+L A V HHG S GHYT D + + W DD +
Sbjct: 417 LSIPQNVF-SPSVRGSIHPEYDLNAVVYHHGTSASGGHYTVDVQQLDKSGWFRIDDTHIH 475
Query: 536 AIGTSKVLHDQ----------------AYVLFYKQ 554
+ V + + AY+LFY +
Sbjct: 476 RVPIHDVENSELSADPSLSKLGHGDRVAYLLFYTR 510
>sp|Q01477|UBP3_YEAST Ubiquitin carboxyl-terminal hydrolase 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP3 PE=1 SV=1
Length = 912
Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 125/464 (26%), Positives = 200/464 (43%), Gaps = 112/464 (24%)
Query: 196 VKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD----IPKAGYPTLTAFVG 251
V ++PRG+IN N+CF+++ LQ L+ C PF+ ++ L TR+ + + L A +
Sbjct: 454 VHSIIPRGIINRANICFMSSVLQVLLYCKPFIDVINVLSTRNTNSRVGTSSCKLLDACLT 513
Query: 252 FVSDFDTPSGGSSKKKNISVLDIGRPFSPS---------MFE--AVLKNFTPD-VPNSIS 299
FD + +KK + D + S F+ A PD ++S
Sbjct: 514 MYKQFDKET---YEKKFLENADDAEKTTESDAKKSSKSKSFQHCATADAVKPDEFYKTLS 570
Query: 300 GRPR--------QEDAQEFLSFIMDQMHDEL----------------------------- 322
P+ QEDA+EFL+ ++DQ+H+EL
Sbjct: 571 TIPKFKDLQWGHQEDAEEFLTHLLDQLHEELISAIDGLTDNEIQNMLQSINDEQLKVFFI 630
Query: 323 --LKLQGESTSINGANTALVSL-----------AEEDEWETV------GPKNKSAVTRTQ 363
L G++ I A+ L L EE+ W V G K K+A RT
Sbjct: 631 RNLSRYGKAEFIKNASPRLKELIEKYGVINDDSTEENGWHEVSGSSKRGKKTKTAAKRTV 690
Query: 364 SFLPSALSDIFGGQLKSVVKAQGNKASA--TVQPFLLLHLDIYSEAVHTIEDALRLFSAP 421
+PS +S +FGGQ +SV+ NK S T+ PF + LDI V+ +E A + FS
Sbjct: 691 EIVPSPISKLFGGQFRSVLDIPNNKESQSITLDPFQTIQLDISDAGVNDLETAFKKFSEY 750
Query: 422 ENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST------------- 468
E L SS+GN V AKK I L ++L++ RFS+ + +
Sbjct: 751 ELLPF--KSSSGND--VEAKKQTFIDKLPQVLLIQFKRFSFINNVNKDNAMTNYNAYNGR 806
Query: 469 --KLHKSVRFPLQLVLGRDLLV-------TPSAEGRKYELVATVTHHGRDPSKGHYTADA 519
K+ K +++ +L++ + + T + R+Y+L + HHG GHYTAD
Sbjct: 807 IEKIRKKIKYGHELIIPEESMSSITLKNNTSGIDDRRYKLTGVIYHHGVSSDGGHYTADV 866
Query: 520 RYF-NDQWLHFDDASVTAIGTSKVLH--------DQAYVLFYKQ 554
+ +++W DD ++T + VL AY+L Y++
Sbjct: 867 YHSEHNKWYRIDDVNITELEDDDVLKGGEEASDSRTAYILMYQK 910
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3
PE=1 SV=2
Length = 520
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/387 (29%), Positives = 178/387 (45%), Gaps = 59/387 (15%)
Query: 195 SVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQEL---RTRDIPKAGYPTLTAFVG 251
S + GL N GN CF+NA LQ+L + F +EL R+ AG T
Sbjct: 152 STTAICATGLRNLGNTCFMNAILQSLSNIEQFCCYFKELPAVELRNGKTAGRRT------ 205
Query: 252 FVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPD---------VPNSISGRP 302
+ T S G + N+S+++ R ++++ F+P+ +PN G
Sbjct: 206 ----YHTRSQGDN---NVSLVEEFRKTLCALWQGSQTAFSPESLFYVVWKIMPN-FRGY- 256
Query: 303 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 362
+Q+DA EF+ +++D +H L+LQG NG + + ++ +E+ T+ NK +
Sbjct: 257 QQQDAHEFMRYLLDHLH---LELQG---GFNGVSRS--AILQENS--TLSASNKCCINGA 306
Query: 363 QSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSE------------AVH 409
+ ++ IFGG L++ V S PFL L LDI S+ V
Sbjct: 307 ST----VVTAIFGGILQNEVNCLICGTESRKFDPFLDLSLDIPSQFRSKRSKNQENGPVC 362
Query: 410 TIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST 468
++ D LR F+ E L E + K IQ L K+L LHL RF + +
Sbjct: 363 SLRDCLRSFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPKVLCLHLKRFHWTAYLRN 422
Query: 469 KLHKSVRFPLQLVLGRDLLVTPSAEGRK---YELVATVTHHGRDPSKGHYTADARYFNDQ 525
K+ V FPL+ + + L+ P G + Y+L A V HHG GHYTA A + +
Sbjct: 423 KVDTYVEFPLRGLDMKCYLLEPENSGPESCLYDLAAVVVHHGSGVGSGHYTAYATH-EGR 481
Query: 526 WLHFDDASVTAIGTSKVLHDQAYVLFY 552
W HF+D++VT V+ +AY+LFY
Sbjct: 482 WFHFNDSTVTLTDEETVVKAKAYILFY 508
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3
PE=2 SV=1
Length = 520
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 176/387 (45%), Gaps = 59/387 (15%)
Query: 195 SVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQEL---RTRDIPKAGYPTLTAFVG 251
S + GL N GN CF+NA LQ+L + F +EL R+ AG T
Sbjct: 152 STTAICATGLRNLGNTCFMNAILQSLSNIEQFCCYFKELPAVELRNGKTAGRRT------ 205
Query: 252 FVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPD---------VPNSISGRP 302
+ T S G S N+S+++ R ++++ F+P+ +PN G
Sbjct: 206 ----YHTRSQGDS---NVSLVEEFRKTLCALWQGSQTAFSPESLFYVVWKIMPN-FRGY- 256
Query: 303 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 362
+Q+DA EF+ +++D +H L+LQG NG + + ++ +E+ T+ NK +
Sbjct: 257 QQQDAHEFMRYLLDHLH---LELQG---GFNGVSRS--AILQEN--STLSASNKCCINGA 306
Query: 363 QSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSE------------AVH 409
+ ++ IFGG L++ V S PFL L LDI S+ V
Sbjct: 307 S----TVVTAIFGGILQNEVNCLICGTESRKFDPFLDLSLDIPSQFRSKRSKNQENGPVC 362
Query: 410 TIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST 468
++ D LR F+ E L E + K IQ L K L LHL RF + +
Sbjct: 363 SLRDCLRSFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPKALCLHLKRFHWTAYLRN 422
Query: 469 KLHKSVRFPLQLVLGRDLLVTPSAEGRK---YELVATVTHHGRDPSKGHYTADARYFNDQ 525
K+ V+FPL+ + + L+ P G Y+L A V HHG GHYTA A + +
Sbjct: 423 KVDTYVQFPLRGLDMKCYLLEPENSGPDSCLYDLAAVVVHHGSGVGSGHYTAYAVH-EGR 481
Query: 526 WLHFDDASVTAIGTSKVLHDQAYVLFY 552
W HF+D++VT V +AY+LFY
Sbjct: 482 WFHFNDSTVTVTDEETVGKAKAYILFY 508
>sp|O60139|UBP4_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp4 PE=1 SV=2
Length = 593
Score = 119 bits (299), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 113/395 (28%), Positives = 171/395 (43%), Gaps = 77/395 (19%)
Query: 195 SVKDLLPRGLINSGNLCFLNATLQALMSCS----PFVQ---LLQELRTRDIPKAGYPTLT 247
S ++ P GL N GN C++N LQ L +C P +Q LLQ + T++ G +
Sbjct: 220 SYENYQPIGLTNLGNTCYMNCVLQCLFACKDLTIPMLQGRGLLQNINTKNPLGTGGKITS 279
Query: 248 AFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDA 307
AF + G R SP F ++++ D SI G Q DA
Sbjct: 280 AFFSLLQSVLLNHG-------------QRSISPRNFLEIVQSLNRDF--SIDG---QCDA 321
Query: 308 QEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEED---------------EWETVG 352
QEFL+F +D++H++L + N + + + L E+ EW
Sbjct: 322 QEFLNFFLDKLHEDL--------NSNASRSPIAPLTEDQLSAREELPLSHFSHIEWNLHL 373
Query: 353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPF--LLLHLDIYSEAVH 409
NKS V F GQL S + + S T PF L + +D S V
Sbjct: 374 RSNKSIVVNN-----------FVGQLCSRTQCMTCGRTSTTFAPFTSLAIPIDDVSHVV- 421
Query: 410 TIEDALRLFSAPENLEGYRTSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGST 468
++++ L FSAPE L+G+ V +AKK + I L + LI+ + RF G
Sbjct: 422 SLQECLLKFSAPELLQGHDGWHCPVCKVQRSAKKVIMISKLPEYLIIQIQRFKISVMGRK 481
Query: 469 KLHKSVRFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGHYTADARYF 522
K+ + LQ + +LV PS + Y L A + H+G+ GHY +D F
Sbjct: 482 KIDTPLGLSLQ--IPSKMLVPPSFQSGIGYIPSNYNLFAFICHYGQ-LENGHYISDV-LF 537
Query: 523 NDQWLHFDDASVTAIGTSKVLHD---QAYVLFYKQ 554
N++W H DD+ V +G L + +Y+LFYK+
Sbjct: 538 NNEWCHIDDSIVRTVGGITDLREDFSSSYILFYKR 572
>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus GN=USP2
PE=2 SV=1
Length = 357
Score = 119 bits (298), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 159/362 (43%), Gaps = 43/362 (11%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDI---PKAGYPTLTAFVGFVSDFDT 258
GL N GN CF+N+ LQ L + LQ RD+ + ++ F + T
Sbjct: 20 GLRNLGNTCFMNSILQCLSNTKELRDYCLQNQYLRDLNNNSRMRTALMSEFAKLIQLLWT 79
Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
S S SPS F+ ++ + P Q+DAQEFL F++D +
Sbjct: 80 SSPNDS-------------VSPSEFKTQIQRYAPRFVGY-----NQQDAQEFLRFLLDGL 121
Query: 319 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
H E+ ++ AN + +DE K++ R Q S +SD+F GQL
Sbjct: 122 HGEVNRVLVRPR----ANADTLDHLPDDE------KSRQMWRRYQEREDSRVSDLFVGQL 171
Query: 379 KS-VVKAQGNKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEGYRTSSTG 433
KS + ++ S PF L L I Y E T+ D LRLF+ + L+G +
Sbjct: 172 KSSLTCSECGYCSTAFDPFWDLSLPIPKKGYGEV--TLMDCLRLFTKEDVLDGDEKPTCC 229
Query: 434 NAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSA 492
T K IQ KIL+LHL RFS ++KL V FPL+ + R+ + S
Sbjct: 230 RCKARTRCTKKFSIQKFPKILVLHLKRFSEARIRASKLTTFVNFPLKDLDLRE-FASQSC 288
Query: 493 EGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGTSKVLHDQAYVLF 551
Y L A H G GHYTA + + +W F+D+ VT + +S V AY+LF
Sbjct: 289 NHAVYNLYAVSNHSG-TTMGGHYTAYCKSPISSEWHSFNDSRVTPMSSSHVRSSDAYLLF 347
Query: 552 YK 553
Y+
Sbjct: 348 YE 349
>sp|O88623|UBP2_MOUSE Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2
PE=1 SV=2
Length = 613
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 163/362 (45%), Gaps = 43/362 (11%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF+N+ LQ L + LQ L RD+ G+ T +A + +F
Sbjct: 276 GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDL---GH-TSSAHTALMEEF----- 326
Query: 262 GSSKKKNISVLDIGRP---FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
K I + P SPS F+ ++ + P Q+DAQEFL F++D +
Sbjct: 327 ----AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFMGY-----NQQDAQEFLRFLLDGL 377
Query: 319 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
H+E+ ++ + L L +E+ K + + S + D+F GQL
Sbjct: 378 HNEVNRVAARP---KASPETLDHLPDEE-------KGRQMWRKYLEREDSRIGDLFVGQL 427
Query: 379 KSVVKAQGNKASATV-QPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEG-YRTSST 432
KS + +TV PF L L I Y E T+ D +RLF+ + L+G + +
Sbjct: 428 KSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDILDGDEKPTCC 485
Query: 433 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSA 492
K +Q KIL+LHL RFS ++KL V FPL+ + R+ + +
Sbjct: 486 RCRARKRCIKKFSVQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLRE-FASENT 544
Query: 493 EGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGTSKVLHDQAYVLF 551
Y L A H G GHYTA R +W F+D+SVT + +S+V AY+LF
Sbjct: 545 NHAVYNLYAVSNHSG-TTMGGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLF 603
Query: 552 YK 553
Y+
Sbjct: 604 YE 605
>sp|Q5U349|UBP2_RAT Ubiquitin carboxyl-terminal hydrolase 2 OS=Rattus norvegicus
GN=Usp2 PE=1 SV=1
Length = 618
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 164/362 (45%), Gaps = 43/362 (11%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF+N+ LQ L + LQ L RD+ G+ T +A + +F
Sbjct: 281 GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDL---GH-TSSAHTALMEEF----- 331
Query: 262 GSSKKKNISVLDIGRP---FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
K I + P SPS F+ ++ + P Q+DAQEFL F++D +
Sbjct: 332 ----AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGY-----NQQDAQEFLRFLLDGL 382
Query: 319 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
H+E+ ++ + +L L +E+ K + + S + D+F GQL
Sbjct: 383 HNEVNRVAARP---KPSPESLDHLPDEE-------KGRQMWRKYLEREDSRIGDLFVGQL 432
Query: 379 KSVVKAQGNKASATV-QPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEG-YRTSST 432
KS + +TV PF L L I Y E T+ D +RLF+ + L+G + +
Sbjct: 433 KSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLDGDEKPTCC 490
Query: 433 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSA 492
K +Q KIL+LHL RFS ++KL V FPL+ + R+ + +
Sbjct: 491 RCRARKRCIKKFSVQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLRE-FASENT 549
Query: 493 EGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGTSKVLHDQAYVLF 551
Y L A H G GHYTA R +W F+D+SVT + +S+V AY+LF
Sbjct: 550 NHAVYNLYAVSNHSGTT-MGGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLF 608
Query: 552 YK 553
Y+
Sbjct: 609 YE 610
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2
PE=1 SV=2
Length = 605
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 111/362 (30%), Positives = 160/362 (44%), Gaps = 43/362 (11%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF+N+ LQ L + LQ L RD+ A V +F
Sbjct: 268 GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGS----NAHTALVEEF----- 318
Query: 262 GSSKKKNISVLDIGRP---FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
K I + P SPS F+ ++ + P Q+DAQEFL F++D +
Sbjct: 319 ----AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGY-----NQQDAQEFLRFLLDGL 369
Query: 319 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
H+E+ ++ S N + +DE K + + S + D+F GQL
Sbjct: 370 HNEVNRVTLRPKS----NPENLDHLPDDE------KGRQMWRKYLEREDSRIGDLFVGQL 419
Query: 379 KSVVKAQGNKASATV-QPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEG-YRTSST 432
KS + +TV PF L L I Y E T+ D +RLF+ + L+G + +
Sbjct: 420 KSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLDGDEKPTCC 477
Query: 433 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSA 492
G K IQ KIL+LHL RFS ++KL V FPL+ + R+ + +
Sbjct: 478 RCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLRE-FASENT 536
Query: 493 EGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGTSKVLHDQAYVLF 551
Y L A H G GHYTA R +W F+D+SVT + +S+V AY+LF
Sbjct: 537 NHAVYNLYAVSNHSGTT-MGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLF 595
Query: 552 YK 553
Y+
Sbjct: 596 YE 597
>sp|Q9FPS9|UBP15_ARATH Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana
GN=UBP15 PE=2 SV=2
Length = 924
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 157/368 (42%), Gaps = 69/368 (18%)
Query: 196 VKDLLPRGLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVS 254
V DL PRGL+N GN C+ NA LQ+L P V LL+ +R + + V
Sbjct: 432 VFDLSPRGLVNCGNSCYANAVLQSLTCTKPLVAYLLRRSHSRSCSGKDWCLMCELEQHV- 490
Query: 255 DFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFI 314
+ + + G P S S + +++ + G QEDA EFL +
Sbjct: 491 --------------MMLRESGGPLSASRILSHMRSINCQI-----GDGSQEDAHEFLRLL 531
Query: 315 MDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIF 374
+ M L+ G T ++ P+ + + + +F
Sbjct: 532 VASMQSICLERLGGETKVD-------------------PRLQET---------TLVQHMF 563
Query: 375 GGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTS 430
GG+L+S VK + + S + + L L+IY V +++DAL F+ PE+L+G YR S
Sbjct: 564 GGRLRSKVKCLRCDHESERYENIMDLTLEIYG-WVESLQDALTQFTRPEDLDGENMYRCS 622
Query: 431 STGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQL----VLGRDL 486
AG V A+K + I IL + L RF G G K++K + FP L + R
Sbjct: 623 RC--AGYVRARKELSIHEAPNILTIVLKRFQEGRYG--KINKCISFPEMLDMIPFMTRTG 678
Query: 487 LVTPSAEGRKYELVATVTHHGRDPSK--GHYTADARYFNDQWLHFDDASVTAIGTSKVLH 544
V P Y L A + H + GHY + + W DD+ + + ++V+
Sbjct: 679 DVPP-----LYMLYAVIVHLDTLNASFSGHYISYVKDLRGNWYRIDDSEIHPVPMTQVMS 733
Query: 545 DQAYVLFY 552
+ AY+LFY
Sbjct: 734 EGAYMLFY 741
>sp|Q9UK80|UBP21_HUMAN Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21
PE=1 SV=1
Length = 565
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 166/373 (44%), Gaps = 51/373 (13%)
Query: 203 GLINSGNLCFLNATLQALMSCSPF--VQLLQELRTRDIPKAGYPT-LT-AFVGFVSDFDT 258
GL N GN CFLNA LQ L S P L ++ R +++P G LT AF +
Sbjct: 213 GLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFR-QEVPGGGRAQELTEAFADVIGALWH 271
Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
P D +P+ F AV + + P S SG Q+DAQEFL +M+++
Sbjct: 272 P-------------DSCEAVNPTRFRAVFQKYVP----SFSGY-SQQDAQEFLKLLMERL 313
Query: 319 HDELLKLQGESTSINGANTALVS-------LAEEDEWETVGPKN---KSAVTRTQSFLPS 368
H E+ + +G AN + S L EE E N K + R S
Sbjct: 314 HLEINR-RGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERED----S 368
Query: 369 ALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPEN 423
+ D+F GQLKS +K Q S T + F L L I ++ ++ D LF+ E
Sbjct: 369 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEE 428
Query: 424 LEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHK-SVRFPLQ-L 480
LE T + K + +Q +IL+LHL RFS S+GS K V FPLQ L
Sbjct: 429 LESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFS-ASRGSIKKSSVGVDFPLQRL 487
Query: 481 VLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTS 540
LG + A Y+L A H G GHYTA R W ++D+ V+ + +
Sbjct: 488 SLGD--FASDKAGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSEN 543
Query: 541 KVLHDQAYVLFYK 553
+V + YVLFY+
Sbjct: 544 QVASSEGYVLFYQ 556
>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1
SV=2
Length = 1080
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 153/357 (42%), Gaps = 35/357 (9%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLL-QELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN C++N+ LQ L + + DI ++ +G + G
Sbjct: 740 GLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSN------LLGHKGEVAEEFG 793
Query: 262 GSSKKKNISVLDIG--RPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMH 319
K L G R SP F+ + S Q+D+QE L F+MD +H
Sbjct: 794 IIMK-----ALWTGQYRYISPKDFKVTIGKINDQFAGS-----SQQDSQELLLFLMDGLH 843
Query: 320 DELLKLQGESTSINGANTALVSL-AEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
++L K N L L A E W+ N+S + +F GQ
Sbjct: 844 EDLNKADNRKRHKEENNEHLDDLQAAEHAWQKHKQLNESIIV-----------ALFQGQF 892
Query: 379 KSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAG 436
KS V+ + S T + F+ L L + S + T++D LRLFS E L + R +
Sbjct: 893 KSTVQCLTCRRRSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRA 952
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK 496
+ K ++I L +L++HL RFSY + KL SV FPL+ + ++ P +K
Sbjct: 953 RRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKK 1012
Query: 497 YELVATVTHHGRDPSKGHYTADARYFNDQ-WLHFDDASVTAIGTSKVLHDQAYVLFY 552
Y L + H+G GHYTA + Q W FDD V+ I S V AY+LFY
Sbjct: 1013 YNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1068
>sp|Q2KJ72|UBP21_BOVIN Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21
PE=2 SV=1
Length = 565
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 118/372 (31%), Positives = 166/372 (44%), Gaps = 49/372 (13%)
Query: 203 GLINSGNLCFLNATLQALMSCSPF--VQLLQELRTRDIPKAGYPT-LT-AFVGFVSDFDT 258
GL N GN CFLNA LQ L S P L ++ R +++P G LT AF +
Sbjct: 213 GLRNLGNTCFLNALLQCLSSTRPLRDFCLRRDFR-QEVPGGGRAQELTEAFADVIGALWH 271
Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
P D +P+ F AV + + P S SG Q+DAQEFL +M+++
Sbjct: 272 P-------------DSCEAVNPTRFRAVFQKYVP----SFSGY-SQQDAQEFLKLLMERL 313
Query: 319 HDELLKLQGESTSINGANTALV------SLAEEDEWETVGPKN---KSAVTRTQSFLPSA 369
H E+ + + I ++ A +L EE E N K + R S
Sbjct: 314 HLEINRRGRRAPPILASSPAPHPPRLGGALLEEPELSDDDRANLMWKRYLERED----SK 369
Query: 370 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENL 424
+ D+F GQLKS +K Q S T + F L L I ++ ++ D LF+ E L
Sbjct: 370 IVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEEL 429
Query: 425 EGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHK-SVRFPLQ-LV 481
E T + K + +Q +IL+LHL RFS S+GS K V FPLQ L
Sbjct: 430 ESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFS-ASRGSIKKSSVGVDFPLQRLS 488
Query: 482 LGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSK 541
LG + A Y+L A H G GHYTA R W ++D+ V+ + ++
Sbjct: 489 LGD--FASDKAGSPVYQLYALCNHSG-SVHYGHYTALCRC-QTGWHVYNDSRVSPVSENQ 544
Query: 542 VLHDQAYVLFYK 553
V + YVLFY+
Sbjct: 545 VASSEGYVLFYQ 556
>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1
SV=1
Length = 1118
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 156/357 (43%), Gaps = 35/357 (9%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLL-QELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN C++N+ LQ L + + DI ++ +G + G
Sbjct: 778 GLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSN------LLGHKGEVAEEFG 831
Query: 262 GSSKKKNISVLDIG--RPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMH 319
K L G R SP F+ + + + +G Q+D+QE L F+MD +H
Sbjct: 832 IIMK-----ALWTGQYRYISPKDFKITIGK----INDQFAGY-SQQDSQELLLFLMDGLH 881
Query: 320 DELLKLQGESTSINGANTALVSL-AEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
++L K N L A E W+ N+S + +F GQ
Sbjct: 882 EDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVA-----------LFQGQF 930
Query: 379 KSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAG 436
KS V+ +K S T + F+ L L + S + T++D LRLFS E L + R +
Sbjct: 931 KSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRA 990
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK 496
+ K ++I L +L++HL RFSY + KL SV FPL+ + ++ P +K
Sbjct: 991 RRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK 1050
Query: 497 YELVATVTHHGRDPSKGHYTADARYFNDQ-WLHFDDASVTAIGTSKVLHDQAYVLFY 552
Y L + H+G GHYTA + Q W FDD V+ I S V AY+LFY
Sbjct: 1051 YNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1106
>sp|Q9QZL6|UBP21_MOUSE Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21
PE=1 SV=1
Length = 566
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 114/372 (30%), Positives = 160/372 (43%), Gaps = 48/372 (12%)
Query: 203 GLINSGNLCFLNATLQALMSCSPF--VQLLQELRTRDIPKAGYPT-LT-AFVGFVSDFDT 258
GL N GN CFLNA LQ L S P L ++ R +++P G LT AF +
Sbjct: 213 GLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFR-QEVPGGGRAQELTEAFADVIGALWH 271
Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
P D +P+ F AV + + P S SG Q+DAQEFL +M+++
Sbjct: 272 P-------------DSCEAVNPTRFRAVFQKYVP----SFSGY-SQQDAQEFLKLLMERL 313
Query: 319 HDELLKLQGESTSINGANTALV-------SLAEEDEWETVGPKN---KSAVTRTQSFLPS 368
H E+ + + I + +L EE E N K + R S
Sbjct: 314 HLEINRRGRRAPPILASGPVPSPPRRGGGALHEEPELSDDDRANLMWKRYLERED----S 369
Query: 369 ALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPEN 423
+ D+F GQLKS +K Q S T + F L L I ++ ++ D LF+ E
Sbjct: 370 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEE 429
Query: 424 LEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LV 481
LE T + K + +Q +IL+LHL RFS K V FPLQ L
Sbjct: 430 LESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSIKKSSVGVDFPLQRLS 489
Query: 482 LGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSK 541
LG + A Y+L A H G GHYTA R W ++D+ V+ + ++
Sbjct: 490 LGD--FASDKAGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSENQ 545
Query: 542 VLHDQAYVLFYK 553
V + YVLFY+
Sbjct: 546 VASSEGYVLFYQ 557
>sp|B2GUX4|UBP21_RAT Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus
GN=Usp21 PE=2 SV=1
Length = 565
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 162/374 (43%), Gaps = 53/374 (14%)
Query: 203 GLINSGNLCFLNATLQALMSCSPF--VQLLQELRTRDIPKAGYPT-LT-AFVGFVSDFDT 258
GL N GN CFLNA LQ L S P L ++ R +++P G LT AF +
Sbjct: 213 GLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFR-QEVPGGGRAQELTEAFADVIGALWH 271
Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
P D +P+ F AV + + P S SG Q+DAQEFL +M+++
Sbjct: 272 P-------------DSCEAVNPTRFRAVFQKYVP----SFSGY-SQQDAQEFLKLLMERL 313
Query: 319 HDELLKLQGESTSINGANTALV------SLAEEDEWETVGPKN---KSAVTRTQSFLPSA 369
H E+ + + I + +L EE E N K + R S
Sbjct: 314 HLEINRRGRRAPPILASGPVPSPPRRGGALHEEPELSDDDRANLMWKRYLERED----SK 369
Query: 370 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENL 424
+ D+F GQLKS +K Q S T + F L L I ++ ++ D LF+ E L
Sbjct: 370 IVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEEL 429
Query: 425 EGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVL 482
E T + K + +Q +IL+LHL RFS K V FPLQ L L
Sbjct: 430 ESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSIKKSSVGVDFPLQRLSL 489
Query: 483 G---RDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGT 539
G D + +P Y+L A H G GHYTA R W ++D+ V+ +
Sbjct: 490 GDFASDKVGSPV-----YQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSE 542
Query: 540 SKVLHDQAYVLFYK 553
++V + YVLFY+
Sbjct: 543 NQVASSEGYVLFYQ 556
>sp|Q2KHV7|UBP2_BOVIN Ubiquitin carboxyl-terminal hydrolase 2 OS=Bos taurus GN=USP2 PE=2
SV=1
Length = 606
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 161/362 (44%), Gaps = 43/362 (11%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF+N+ LQ L + LQ L RD+ + A + +F
Sbjct: 269 GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYLRDLSHSS----RAHTALMEEF----- 319
Query: 262 GSSKKKNISVLDIGRP---FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
K I + P SPS F+ ++ + P Q+DAQEFL F++D +
Sbjct: 320 ----AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGY-----NQQDAQEFLRFLLDGL 370
Query: 319 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
H+E+ ++ S NT + +DE K + + S + D+F GQL
Sbjct: 371 HNEVNRVIARPKS----NTENLDHLPDDE------KGRQMWRKYLEREDSRIGDLFVGQL 420
Query: 379 KSVVKAQGNKASATV-QPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEG-YRTSST 432
KS + +TV PF L L I Y E T+ D +RLF+ + L+G + +
Sbjct: 421 KSSLTCTDCGYCSTVFDPFWDLSLPITKRGYPEV--TLMDCMRLFTKEDVLDGDEKPTCC 478
Query: 433 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSA 492
K IQ KIL+LHL RFS ++KL V FPL+ + R+ + +
Sbjct: 479 RCRARKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTAFVNFPLRDLDLRE-FASENT 537
Query: 493 EGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGTSKVLHDQAYVLF 551
Y L A H G GHYTA R +W F+D+SV+ + +S+V AY+LF
Sbjct: 538 NHAVYNLYAVSNHSG-TTMGGHYTAYCRSPVTGEWHTFNDSSVSPMSSSQVRTSDAYLLF 596
Query: 552 YK 553
Y+
Sbjct: 597 YE 598
>sp|C0HB46|UBP12_SALSA Ubiquitin carboxyl-terminal hydrolase 12 OS=Salmo salar GN=usp12
PE=2 SV=1
Length = 372
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 121/418 (28%), Positives = 177/418 (42%), Gaps = 72/418 (17%)
Query: 153 ISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCF 212
+SKF C NA+A I GS++ P +NE GL+N GN C+
Sbjct: 7 VSKFASFCTMG-----ANASALEKEI-GSEQFP---VNEHY--------FGLVNFGNTCY 49
Query: 213 LNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272
N+ LQAL C PF + + L R P+ LT D +++K+ + V+
Sbjct: 50 CNSVLQALYFCRPFREKI--LAYRSQPRRKENLLTCLA------DLFHSIANQKRKVGVI 101
Query: 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSI 332
P F L+ N + Q+DA EFL+++++ + D LL+ + +
Sbjct: 102 ------PPKKFITRLRK-----ENELFDNYMQQDAHEFLNYLLNTIAD-LLQEERKQDKT 149
Query: 333 NGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSA-LSDIFGGQLKSVVKA-QGNKAS 390
NG A SL ++ P PS + +IF G L + + S
Sbjct: 150 NG-RLANGSLDSQNHNSNAPP-------------PSTWVHEIFQGTLTNETRCLTCETIS 195
Query: 391 ATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTL 449
+ + FL L +D+ E +I LR FS E L Y+ A K ++++ L
Sbjct: 196 SKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMRVKKL 253
Query: 450 SKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHG 507
IL LHL RF Y Q TKL V FPL+L L + E R Y+LVA V H G
Sbjct: 254 PMILALHLKRFKYMEQLQRYTKLSYRVVFPLELRLFNTSGDATNPE-RLYDLVAVVVHCG 312
Query: 508 RDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH------------DQAYVLFYK 553
P++GHY A + +D WL FDD V I + + Y+LFY+
Sbjct: 313 SGPNRGHYIAIVKS-HDFWLLFDDDIVEKIDAQAIEEFYGLTSEISKNSESGYILFYQ 369
>sp|A4FUN7|UBP12_DANRE Ubiquitin carboxyl-terminal hydrolase 12A OS=Danio rerio GN=usp12a
PE=2 SV=1
Length = 371
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 177/419 (42%), Gaps = 75/419 (17%)
Query: 153 ISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCF 212
+SKF C NA+A I GS++ P +NE GL+N GN C+
Sbjct: 7 VSKFASFCTMG-----ANASALEKEI-GSEQFP---VNEHY--------FGLVNFGNTCY 49
Query: 213 LNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272
N+ LQAL C PF + + L R P+ LT D +++K+ + V+
Sbjct: 50 CNSVLQALYFCRPFREKI--LAYRSQPRRKENLLTCLA------DLFHSIANQKRKVGVI 101
Query: 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSI 332
P F L+ N + Q+DA EFL+++++ + D LL+ + +
Sbjct: 102 ------PPKKFITRLRK-----ENELFDNYMQQDAHEFLNYLLNTIAD-LLQEERKQDKQ 149
Query: 333 NG--ANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKA 389
NG AN L S N S T + + +IF G L + +
Sbjct: 150 NGKLANGTLDS-----------QNNNSTPPST-----TWVHEIFQGTLTNETRCLTCETI 193
Query: 390 SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQT 448
S+ + FL L +D+ E +I LR FS E L Y+ A K ++++
Sbjct: 194 SSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMRVKK 251
Query: 449 LSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHH 506
L IL LHL RF Y Q TKL V FPL+L L + E R Y+LVA V H
Sbjct: 252 LPMILALHLKRFKYMEQLQRYTKLSYRVVFPLELRLFNTSGDATNPE-RLYDLVAVVVHC 310
Query: 507 GRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH------------DQAYVLFYK 553
G P++GHY A + +D WL FDD V I + + Y+LFY+
Sbjct: 311 GSGPNRGHYIAIVKS-HDFWLLFDDDIVEKIDAQAIEEFYGLTSEISKNSESGYILFYQ 368
>sp|A5WWB0|UBP46_DANRE Ubiquitin carboxyl-terminal hydrolase 46 OS=Danio rerio GN=usp46
PE=3 SV=2
Length = 370
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 103/374 (27%), Positives = 160/374 (42%), Gaps = 65/374 (17%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN C+ N+ LQAL C PF + + + + K T A D
Sbjct: 36 GLVNFGNTCYCNSVLQALYFCRPFRENVLAYKVQQKKKENLLTCLA--------DLFHSI 87
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHD-- 320
+++KK + V+ P F + L+ N + Q+DA EFL+++++ + D
Sbjct: 88 ATQKKKVGVI------PPKKFISRLRK-----ENDLFDNYMQQDAHEFLNYLLNTVADIL 136
Query: 321 -ELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLK 379
E K + ++ + TA+ + +T +NK P+ + +IF G L
Sbjct: 137 QEERKQEKQNGRLKNNGTAIAT-------DTEPEQNKID--------PTWVHEIFQGTLT 181
Query: 380 SVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGV 437
+ + S+ + FL L +D+ E +I LR FS E L Y+
Sbjct: 182 NETRCLNCETVSSKDEDFLDLSVDV--EQNTSITHCLRDFSNTETLCSEYKYYCEMCCSK 239
Query: 438 VTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEG- 494
A+K ++++ L IL LHL RF Y Q TKL V FPL+L L S +
Sbjct: 240 QEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLEL-----RLFNTSGDAV 294
Query: 495 ---RKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH------- 544
R Y+LVA V H G P++GHY + + WL FDD V I +
Sbjct: 295 NLDRMYDLVAVVVHCGSGPNRGHYITIVKS-HGFWLLFDDDIVEKIDAQAIEEFYGLTSD 353
Query: 545 -----DQAYVLFYK 553
+ Y+LFY+
Sbjct: 354 ISKNSESGYILFYQ 367
>sp|O24454|UBP3_ARATH Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana
GN=UBP3 PE=1 SV=1
Length = 371
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 110/385 (28%), Positives = 167/385 (43%), Gaps = 50/385 (12%)
Query: 194 KSVKDLLPRG-----LINSGNLCFLNATLQALMSCSPFVQLLQELRT--RDIPKAGYPTL 246
K++ D P G N GN C+ N+ LQAL C PF + L E T + + A +
Sbjct: 10 KALGDQFPEGERYFGFENFGNTCYCNSVLQALYFCVPFREQLLEYYTSNKSVADAEENLM 69
Query: 247 TAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQED 306
T D S SS+KK V+ +P F LK N + +D
Sbjct: 70 TCLA------DLFSQISSQKKKTGVI------APKRFVQRLKK-----QNELFRSYMHQD 112
Query: 307 AQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFL 366
A EFL+++++++ D L+ E+ + + S + E + + V + +
Sbjct: 113 AHEFLNYLLNEVVD---ILEKEAKATKTEHETSSSSSPEKIANGLKVPQANGVVHKEPIV 169
Query: 367 PSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLE 425
+ + +IF G L + + + +A + FL L LDI E +I L+ FS+ E L
Sbjct: 170 -TWVHNIFQGILTNETRCLRCETVTARDETFLDLSLDI--EQNSSITSCLKNFSSTETLH 226
Query: 426 GY-RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVL 482
+ + A+K +KI+ IL++HL RF Y Q KL V FPL+L L
Sbjct: 227 AEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKL 286
Query: 483 GRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKV 542
V P A+ +Y L A V H G P+ GHY + + N WL FDD +V I S V
Sbjct: 287 SNT--VEPYADV-EYSLFAVVVHVGSGPNHGHYVSLVKSHN-HWLFFDDENVEMIEESAV 342
Query: 543 L------------HDQAYVLFYKQV 555
D Y+LFY+ +
Sbjct: 343 QTFFGSSQEYSSNTDHGYILFYESL 367
>sp|Q9D9M2|UBP12_MOUSE Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus musculus GN=Usp12
PE=2 SV=2
Length = 370
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 155/371 (41%), Gaps = 63/371 (16%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN C+ N+ LQAL C PF + + L + P+ LT D
Sbjct: 40 GLVNFGNTCYCNSVLQALYFCRPFRE--KVLAYKSQPRKKENLLTCLA------DLFHSI 91
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDEL 322
+++KK + V+ P F L+ N + Q+DA EFL+++++ + D L
Sbjct: 92 ATQKKKVGVI------PPKKFITRLRK-----ENELFDNYMQQDAHEFLNYLLNTIADIL 140
Query: 323 LKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382
E N L + ++E P P+ + +IF G L +
Sbjct: 141 ----QEERKQEKQNGRLRNGDVDNEDNNSTPD------------PTWVHEIFQGTLTNET 184
Query: 383 KA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTA 440
+ S+ + FL L +D+ E +I LR FS E L Y+ A
Sbjct: 185 RCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEA 242
Query: 441 KKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEG---- 494
K +K++ L IL LHL RF Y Q TKL V FPL+L L S +
Sbjct: 243 HKRMKVKKLPLILALHLKRFKYMDQLHRYTKLSYRVVFPLEL-----RLFNTSGDATNPD 297
Query: 495 RKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH---------- 544
R Y+LVA V H G P++GHY A + +D WL FDD V I +
Sbjct: 298 RMYDLVAVVVHCGSGPNRGHYIAIVKS-HDFWLLFDDDIVEKIDAQAIEEFYGLTSDISK 356
Query: 545 --DQAYVLFYK 553
+ Y+LFY+
Sbjct: 357 NSESGYILFYQ 367
>sp|A5D9H7|UBP12_BOVIN Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos taurus GN=USP12
PE=2 SV=1
Length = 369
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 155/371 (41%), Gaps = 64/371 (17%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN C+ N+ LQAL C PF + + L + P+ LT D
Sbjct: 40 GLVNFGNTCYCNSVLQALYFCRPFRE--KVLAYKSQPRKKESLLTCLA------DLFHSI 91
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDEL 322
+++KK + V+ P F L+ N + Q+DA EFL+++++ + D +
Sbjct: 92 ATQKKKVGVI------PPKKFITRLRK-----ENELFDNYMQQDAHEFLNYLLNTIAD-I 139
Query: 323 LKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382
L+ + + NG P + P+ + +IF G L +
Sbjct: 140 LQEERKQEKQNGR----------------LPNGNIDSENNSTPDPTWVHEIFQGTLTNET 183
Query: 383 KA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTA 440
+ S+ + FL L +D+ E +I LR FS E L Y+ A
Sbjct: 184 RCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEA 241
Query: 441 KKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEG---- 494
K +K++ L IL LHL RF Y Q TKL V FPL+L L S +
Sbjct: 242 HKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLEL-----RLFNTSGDATNPD 296
Query: 495 RKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH---------- 544
R Y+LVA V H G P++GHY A + +D WL FDD V I +
Sbjct: 297 RMYDLVAVVVHCGSGPNRGHYIAIVKS-HDFWLLFDDDIVEKIDAQAIEEFYGLTSDISK 355
Query: 545 --DQAYVLFYK 553
+ Y+LFY+
Sbjct: 356 NSESGYILFYQ 366
>sp|O74442|UBP16_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 16
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp16 PE=1 SV=1
Length = 457
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 145/355 (40%), Gaps = 55/355 (15%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN CF+N+ LQ + P VQ L + + L V+ P+ G
Sbjct: 126 GLVNLGNTCFMNSVLQLMTQTPPLVQYLLSGQHSLSCRMNACVLCRMEQHVAR-AYPNKG 184
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRP-RQEDAQEFLSFIMDQMHDE 321
+ + F PS +++LK + RP RQEDA EF+ +++D
Sbjct: 185 TKR---------ASAFKPSGIQSMLKVISSHF------RPYRQEDAHEFMRYLVDAWQKS 229
Query: 322 LLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKS- 380
L+ KN +R S + IFGG L+
Sbjct: 230 CLQ---------------------------NHKNLDHPSRETS----VVHRIFGGYLRQQ 258
Query: 381 VVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAG-VVT 439
++ + K S T Q L L +D ++ D+L+ F E L N +V
Sbjct: 259 ILCSVCKKPSNTYQALLDLSVDAKGS---SLADSLKHFVHAEKLTKQNKYRCENCKQLVD 315
Query: 440 AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYEL 499
A K + I IL +H RF++ S+K+ K + +P LG + P+ YEL
Sbjct: 316 ASKQMTIYRAPNILTIHFKRFTFNGFQSSKISKQISYPESFNLG-PYMSDPNCSCW-YEL 373
Query: 500 VATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 554
+ + H G GHY + + N WL FDD V+ +VL+ QAY+L YK+
Sbjct: 374 IGVLVHAGGSTRSGHYYSFCKSSNGVWLKFDDDFVSNSSIDRVLNQQAYILQYKR 428
>sp|O75317|UBP12_HUMAN Ubiquitin carboxyl-terminal hydrolase 12 OS=Homo sapiens GN=USP12
PE=1 SV=2
Length = 370
Score = 102 bits (255), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 155/371 (41%), Gaps = 63/371 (16%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN C+ N+ LQAL C PF + + L + P+ LT D
Sbjct: 40 GLVNFGNTCYCNSVLQALYFCRPFRE--KVLAYKSQPRKKESLLTCLA------DLFHSI 91
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDEL 322
+++KK + V+ P F L+ N + Q+DA EFL+++++ + D L
Sbjct: 92 ATQKKKVGVI------PPKKFITRLRK-----ENELFDNYMQQDAHEFLNYLLNTIADIL 140
Query: 323 LKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382
E N L + ++E P P+ + +IF G L +
Sbjct: 141 ----QEERKQEKQNGRLPNGNIDNENNNSTPD------------PTWVHEIFQGTLTNET 184
Query: 383 KA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTA 440
+ S+ + FL L +D+ E +I LR FS E L Y+ A
Sbjct: 185 RCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEA 242
Query: 441 KKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEG---- 494
K +K++ L IL LHL RF Y Q TKL V FPL+L L S +
Sbjct: 243 HKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLEL-----RLFNTSGDATNPD 297
Query: 495 RKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH---------- 544
R Y+LVA V H G P++GHY A + +D WL FDD V I +
Sbjct: 298 RMYDLVAVVVHCGSGPNRGHYIAIVKS-HDFWLLFDDDIVEKIDAQAIEEFYGLTSDISK 356
Query: 545 --DQAYVLFYK 553
+ Y+LFY+
Sbjct: 357 NSESGYILFYQ 367
>sp|Q9FPS4|UBP23_ARATH Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana
GN=UBP23 PE=2 SV=2
Length = 859
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 142/356 (39%), Gaps = 62/356 (17%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQ-ELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CFLN+ LQ L P LQ + AG+ L A V
Sbjct: 108 GLQNLGNTCFLNSVLQCLTYTEPLAATLQTAAHQKYCHVAGFCALCAIQKHVR------- 160
Query: 262 GSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDE 321
++++ N GR +P + L+ + + N RQEDA E++ +++ MH
Sbjct: 161 -TARQAN------GRILAPKDLVSNLRCISRNFRNC-----RQEDAHEYMINLLECMHKC 208
Query: 322 LLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSV 381
L S S + +LV IFGG L+S
Sbjct: 209 SLPSGVPSESSDAYRRSLVH------------------------------KIFGGSLRSQ 238
Query: 382 VKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG----YRTSSTGNAG 436
VK Q + S PFL L LDI +++ AL F+A E L+ Y+
Sbjct: 239 VKCEQCSHCSNKFDPFLDLSLDI--SKADSLQRALSRFTAVELLDNGAKVYQCERCKQK- 295
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK 496
V AKK + + +L +HL RF + S K+ + V F + + + + P K
Sbjct: 296 -VKAKKQLTVSKAPYVLTVHLKRFE--AHRSEKIDRKVDFTSAIDM-KPFVSGPHEGNLK 351
Query: 497 YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 552
Y L + H+GR GHY R + W DD V + V + +AY+LFY
Sbjct: 352 YTLYGVLVHYGRSSHSGHYACFVRTSSGMWYSLDDNRVVQVSEKTVFNQKAYMLFY 407
>sp|Q9SJA1|UBP19_ARATH Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana
GN=UBP19 PE=2 SV=2
Length = 672
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 149/367 (40%), Gaps = 67/367 (18%)
Query: 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFD 257
+ P GL N GN CF N LQ L P V LL+ R+ + + L F +
Sbjct: 171 MAPCGLTNCGNSCFANVVLQCLSWTRPLVAYLLERGHKRECRRNDWCFLCEFENHLD--- 227
Query: 258 TPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQ 317
+ N S PFSP + L N ++ G RQEDA E + F +D
Sbjct: 228 --------RANYSRF----PFSPMNIISRLPNIGGNL-----GYGRQEDAHELMRFAIDM 270
Query: 318 MHDELLKLQGESTSINGANTALVSLAEEDEW--ETVGPKNKSAVTRTQSFLPSALSDIFG 375
M L DE+ E V P T Q IFG
Sbjct: 271 MQSVCL----------------------DEFGGEKVVPPRAQETTLIQY--------IFG 300
Query: 376 GQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSS 431
G L+S V+ + S + + L ++I+ +AV ++E+ L F+A E L+G Y+
Sbjct: 301 GLLQSQVQCTACSNVSDQYENMMDLTVEIHGDAV-SLEECLDQFTAKEWLQGDNLYKCDR 359
Query: 432 TGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPS 491
+ V A K + I+ IL + L RF G G KL+K + FP LG ++
Sbjct: 360 CDD--YVKACKRLSIRCAPNILTIALKRFQGGRFG--KLNKRISFPETFDLGP--YMSGG 413
Query: 492 AEGRK-YELVATVTHHGRDPSK--GHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAY 548
EG Y+L A + H + GHY + F W DD+ V + VL +AY
Sbjct: 414 GEGSDVYKLYAVIVHLDMLNASFFGHYICYVKDFRGNWYRIDDSEVEKVELEDVLSQRAY 473
Query: 549 VLFYKQV 555
+L Y +V
Sbjct: 474 MLLYSRV 480
>sp|E1B9W9|UBP42_BOVIN Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus GN=USP42
PE=3 SV=1
Length = 1333
Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 146/356 (41%), Gaps = 64/356 (17%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF NA LQ L P +L ++ G+ + ++ + G
Sbjct: 112 GLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQALSNPG 171
Query: 262 GSSKKKNISVLDIGRP-FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHD 320
D+ +P F + + ++F QEDA EFL + +D M
Sbjct: 172 -----------DVIKPMFVINEMRRIARHFRFG---------NQEDAHEFLQYTVDAM-- 209
Query: 321 ELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKS 380
+ +NG+N L + T+ + IFGG L+S
Sbjct: 210 -------QKACLNGSNK----LDRHTQATTL------------------VCQIFGGYLRS 240
Query: 381 VVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAG 436
VK K S T P+L + L+I +A ++ AL F PE L+G Y+ S
Sbjct: 241 RVKCLNCKGVSDTFDPYLDITLEI--KAAQSVNKALEQFVKPEQLDGENSYKCSKCKK-- 296
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK 496
+V A K I S +L L L RF+ + G K+ K V++P L + R + P+ E
Sbjct: 297 MVPASKRFTIHRSSNVLTLSLKRFANFTGG--KIAKDVKYPEYLDI-RPYMSQPNGEPII 353
Query: 497 YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 552
Y L A + H G + GHY + N W +D+ V+ VL QAYVLFY
Sbjct: 354 YVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFY 409
>sp|Q5M981|UB12B_XENLA Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xenopus laevis
GN=usp12-b PE=2 SV=2
Length = 370
Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 156/371 (42%), Gaps = 63/371 (16%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN C+ N+ LQAL C PF + + L + P+ LT D
Sbjct: 40 GLVNFGNTCYCNSVLQALYFCRPFRE--KVLAYKSQPRKKENLLTCLS------DLFHSI 91
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDEL 322
+++KK + V+ P F L+ N + Q+DA EFL+++++ + D +
Sbjct: 92 ATQKKKVGVI------PPKKFITRLRK-----ENELFDNYMQQDAHEFLNYLLNTIAD-I 139
Query: 323 LKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382
L+ + + NG + N + P+ + +IF G L +
Sbjct: 140 LQEERKQEKQNGR---------------IPNGNIDNENNNNTPDPTWVHEIFQGTLTNET 184
Query: 383 KA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTA 440
+ S+ + FL L +D+ E +I LR FS E L Y+ A
Sbjct: 185 RCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEA 242
Query: 441 KKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEG---- 494
K +K++ L IL LHL RF Y Q TKL V FPL+L L S +
Sbjct: 243 HKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLEL-----RLFNTSGDATNPD 297
Query: 495 RKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH---------- 544
R Y+LVA V H G P++GHY A + +D WL FDD V I +
Sbjct: 298 RMYDLVAVVVHCGSGPNRGHYIAIVKS-HDFWLLFDDDIVEKIDAQAIEEFYGLTSDISK 356
Query: 545 --DQAYVLFYK 553
+ Y+LFY+
Sbjct: 357 NSESGYILFYQ 367
>sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42
PE=1 SV=3
Length = 1324
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 146/356 (41%), Gaps = 64/356 (17%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF NA LQ L P +L ++ G+ + ++ + G
Sbjct: 112 GLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQALSNPG 171
Query: 262 GSSKKKNISVLDIGRP-FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHD 320
D+ +P F + + ++F QEDA EFL + +D M
Sbjct: 172 -----------DVIKPMFVINEMRRIARHFRFG---------NQEDAHEFLQYTVDAM-- 209
Query: 321 ELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKS 380
+ +NG+N L + T+ + IFGG L+S
Sbjct: 210 -------QKACLNGSNK----LDRHTQATTL------------------VCQIFGGYLRS 240
Query: 381 VVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAG 436
VK K S T P+L + L+I +A ++ AL F PE L+G Y+ S
Sbjct: 241 RVKCLNCKGVSDTFDPYLDITLEI--KAAQSVNKALEQFVKPEQLDGENSYKCSKCKK-- 296
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK 496
+V A K I S +L L L RF+ + G K+ K V++P L + R + P+ E
Sbjct: 297 MVPASKRFTIHRSSNVLTLSLKRFANFTGG--KIAKDVKYPEYLDI-RPYMSQPNGEPIV 353
Query: 497 YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 552
Y L A + H G + GHY + N W +D+ V+ VL QAYVLFY
Sbjct: 354 YVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFY 409
>sp|Q52KZ6|UB12A_XENLA Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xenopus laevis
GN=usp12-a PE=2 SV=1
Length = 370
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 156/371 (42%), Gaps = 63/371 (16%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN C+ N+ LQAL C PF + + L + P+ LT D
Sbjct: 40 GLVNFGNTCYCNSVLQALYFCRPFRE--KVLAYKSQPRKKENLLTCLS------DLFHSI 91
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDEL 322
+++KK + V+ P F L+ N + Q+DA EFL+++++ + D +
Sbjct: 92 ATQKKKVGVI------PPKKFITRLRK-----ENELFDNYMQQDAHEFLNYLLNTIAD-I 139
Query: 323 LKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382
L+ + + NG + N + P+ + +IF G L +
Sbjct: 140 LQEERKQEKQNGR---------------IPNGNIDNENNNSAPDPTWVHEIFQGTLTNET 184
Query: 383 KA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTA 440
+ S+ + FL L +D+ E +I LR FS E L Y+ A
Sbjct: 185 RCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEA 242
Query: 441 KKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEG---- 494
K +K++ L IL LHL RF Y Q TKL V FPL+L L S +
Sbjct: 243 HKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLEL-----RLFNTSGDATNPD 297
Query: 495 RKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH---------- 544
R Y+LVA V H G P++GHY A + +D WL FDD V I +
Sbjct: 298 RMYDLVAVVVHCGSGPNRGHYIAIVKS-HDFWLLFDDDIVEKIDAQAIEEFYGLTSDISK 356
Query: 545 --DQAYVLFYK 553
+ Y+LFY+
Sbjct: 357 NSESGYILFYQ 367
>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus
GN=Usp42 PE=3 SV=1
Length = 1325
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 146/356 (41%), Gaps = 64/356 (17%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF NA LQ L P +L ++ G+ + ++ + G
Sbjct: 111 GLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNPG 170
Query: 262 GSSKKKNISVLDIGRP-FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHD 320
D+ +P F + + ++F QEDA EFL + +D M
Sbjct: 171 -----------DVIKPMFVINEMRRIARHFRFG---------NQEDAHEFLQYTVDAMQK 210
Query: 321 ELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKS 380
L NG+N L + T+ + IFGG L+S
Sbjct: 211 ACL---------NGSN----KLDRHTQATTL------------------VCQIFGGYLRS 239
Query: 381 VVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAG 436
VK K S T P+L + L+I +A ++ AL F PE L+G Y+ S
Sbjct: 240 RVKCLNCKGVSDTFDPYLDITLEI--KAAQSVTKALEQFVKPEQLDGENSYKCSKCKK-- 295
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK 496
+V A K I S +L + L RF+ + G K+ K V++P L + R + P+ E
Sbjct: 296 MVPASKRFTIHRSSNVLTISLKRFANFTGG--KIAKDVKYPEYLDI-RPYMSQPNGEPII 352
Query: 497 YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 552
Y L A + H G + GHY + N W +D+ V+ VL+ QAYVLFY
Sbjct: 353 YVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLNQQAYVLFY 408
>sp|B2RQC2|UBP42_MOUSE Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus GN=Usp42
PE=2 SV=1
Length = 1324
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 147/356 (41%), Gaps = 64/356 (17%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF NA LQ L P +L ++ G+ + ++ + G
Sbjct: 111 GLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNPG 170
Query: 262 GSSKKKNISVLDIGRP-FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHD 320
D+ +P F + + ++F QEDA EFL + +D M
Sbjct: 171 -----------DVIKPMFVINEMRRIARHFRFG---------NQEDAHEFLQYTVDAM-- 208
Query: 321 ELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKS 380
+ +NG+N L + T+ + IFGG L+S
Sbjct: 209 -------QKACLNGSN----KLDRHTQATTL------------------VCQIFGGYLRS 239
Query: 381 VVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAG 436
VK K S T P+L + L+I +A ++ AL F PE L+G Y+ S
Sbjct: 240 RVKCLNCKGVSDTFDPYLDITLEI--KAAQSVTKALEQFVKPEQLDGENSYKCSKCKK-- 295
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK 496
+V A K I S +L + L RF+ + G K+ K V++P L + R + P+ E
Sbjct: 296 MVPASKRFTIHRSSNVLTISLKRFANFTGG--KIAKDVKYPEYLDI-RPYMSQPNGEPII 352
Query: 497 YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 552
Y L A + H G + GHY + N W +D+ V+ VL+ QAYVLFY
Sbjct: 353 YVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRAVLNQQAYVLFY 408
>sp|Q9FIQ1|UBP21_ARATH Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabidopsis thaliana
GN=UBP21 PE=2 SV=1
Length = 732
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 136/352 (38%), Gaps = 51/352 (14%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL NSGN CF+ + LQ P + L+ + G +
Sbjct: 164 GLYNSGNTCFIASVLQCFTHTVPLIDSLRSFMYGNPCNCGNEKFCVMQALRDHIELALRS 223
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDEL 322
S NI F L F+ D + QEDA EFL +D++
Sbjct: 224 SGYGINID-----------RFRDNLTYFSSDFMIN-----HQEDAHEFLQSFLDKL---- 263
Query: 323 LKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKS-V 381
E + PKN+ +Q + + ++FGG L S +
Sbjct: 264 ------------------------ERCCLDPKNQLGSVSSQDL--NIVDNVFGGGLMSTL 297
Query: 382 VKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAK 441
N S T +P L L+I E V+T+ AL F+ E LE T V T +
Sbjct: 298 CCCNCNSVSNTFEPSLGWSLEI--EDVNTLWKALESFTCVEKLEDQLTCDNCKEKV-TKE 354
Query: 442 KSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAE-GRKYELV 500
K ++ L + HL RF+ K+ + FPL+L L + E +Y L
Sbjct: 355 KQLRFDKLPPVATFHLKRFTNDGVTMEKIFDHIEFPLELDLSPFMSSNHDPEVSTRYHLY 414
Query: 501 ATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 552
A V H G + GHY++ R + W +FDD+ VT I +VL AY+LFY
Sbjct: 415 AFVEHIGIRATFGHYSSYVRSAPETWHNFDDSKVTRISEERVLSRPAYILFY 466
>sp|A8MUK1|U17L5_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 5 OS=Homo
sapiens GN=USP17L5 PE=2 SV=2
Length = 530
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 145/355 (40%), Gaps = 64/355 (18%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN C++NA+LQ L P +L ++ + L ++
Sbjct: 81 GLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITR------ 134
Query: 262 GSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDE 321
++ + G PS +A+ F R +QEDA EFL F +D M
Sbjct: 135 --------ALHNPGHVIQPS--QALAAGF---------HRGKQEDAHEFLMFTVDAMKKA 175
Query: 322 LLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSV 381
L P +K ++ + + IFGG +S
Sbjct: 176 CL-----------------------------PGHKQVDHHSKD--TTLIHQIFGGYWRSQ 204
Query: 382 VKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVT 439
+K + S T P+L + LDI +A +++ AL + PE L G G
Sbjct: 205 IKCLHCHGISDTFDPYLDIALDI--QAAQSVQQALEQLAKPEELNGENAYHCGVCLQRAP 262
Query: 440 AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYEL 499
A K++ + T +K+LIL L RFS K+ K+V++P L + + + P+ Y L
Sbjct: 263 ASKTLTLHTSAKVLILVLKRFS--DVTGNKIAKNVQYPECLDM-QPYMSQPNTGPLVYVL 319
Query: 500 VATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 554
A + H G GHY + + QW DDA VTA + VL QAYVLFY Q
Sbjct: 320 YAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQ 374
>sp|Q8LAM0|UBP4_ARATH Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana
GN=UBP4 PE=1 SV=2
Length = 365
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 161/383 (42%), Gaps = 51/383 (13%)
Query: 194 KSVKDLLPRG-----LINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTA 248
K++ D P G N GN C+ N+ LQAL C+PF + L E + A LT
Sbjct: 10 KALGDQFPEGERYFGFENFGNTCYCNSVLQALYFCAPFREQLLEHYANNKADAEENLLTC 69
Query: 249 FVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQ 308
D S SS+KK V+ +P F LK N + +DA
Sbjct: 70 LA------DLFSQISSQKKKTGVI------APKRFVQRLKK-----QNELFRSYMHQDAH 112
Query: 309 EFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPS 368
EFL+++++++ + L K + + N +++ +A + +K + +
Sbjct: 113 EFLNYLLNELVEILEKETQATKADNETSSSPEKIANVLKAPLANGVHKEPIV-------T 165
Query: 369 ALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGY 427
+ IF G L + + + +A + FL L LDI E +I L+ FS+ E L
Sbjct: 166 WVHKIFQGILTNETRCLRCETVTARDETFLDLSLDI--EQNSSITSCLKNFSSTETLHAE 223
Query: 428 -RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGR 484
+ + A+K +KI+ IL++HL RF Y Q KL V FPL+L L
Sbjct: 224 DKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVVFPLELKLSN 283
Query: 485 DLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVL- 543
+ E Y L A V H G P+ GHY + + N WL FDD SV I S V
Sbjct: 284 TVDEYVDIE---YSLFAVVVHVGSGPNHGHYVSLVKSHN-HWLFFDDESVEIIEESAVQT 339
Query: 544 -----------HDQAYVLFYKQV 555
D Y+L Y+ +
Sbjct: 340 FFGSSQEYSSNTDHGYILLYESL 362
>sp|D6RJB6|U17LK_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 20 OS=Homo
sapiens GN=USP17L20 PE=3 SV=1
Length = 530
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 144/355 (40%), Gaps = 64/355 (18%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN C++NA+LQ L P +L ++ + L ++
Sbjct: 81 GLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITR------ 134
Query: 262 GSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDE 321
++ + G PS +A+ F R +QEDA EFL F +D M
Sbjct: 135 --------ALHNPGHVIQPS--QALAAGF---------HRGKQEDAHEFLMFTVDAMKKA 175
Query: 322 LLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSV 381
L P +K ++ + + IFGG +S
Sbjct: 176 CL-----------------------------PGHKQVDHHSKD--TTLIHQIFGGYWRSQ 204
Query: 382 VKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVT 439
+K + S T P+L + LDI +A +++ AL PE L G G
Sbjct: 205 IKCLHCHGISDTFDPYLDIALDI--QAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAP 262
Query: 440 AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYEL 499
A K++ + T +K+LIL L RFS K+ K+V++P L + + + P+ Y L
Sbjct: 263 ASKTLTLHTSAKVLILVLKRFS--DVTGNKIAKNVQYPECLDM-QPYMSQPNTGPLVYVL 319
Query: 500 VATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 554
A + H G GHY + + QW DDA VTA + VL QAYVLFY Q
Sbjct: 320 YAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQ 374
>sp|Q7M764|U17L2_MOUSE Ubiquitin carboxyl-terminal hydrolase 17 OS=Mus musculus GN=Usp17l2
PE=3 SV=2
Length = 540
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 143/357 (40%), Gaps = 66/357 (18%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSD--FDTP 259
GL N+GN C+LNA LQ L P +L + ++ + A V+ +
Sbjct: 86 GLQNTGNSCYLNAALQCLTHTPPLADYMLSQEHSQTCCSPEGCKMCAMEAHVTQSLLHSH 145
Query: 260 SGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMH 319
SG D+ +P + S + +QEDA EFL F ++ MH
Sbjct: 146 SG-----------DVMKP--------------SQILTSAFHKHQQEDAHEFLMFTLETMH 180
Query: 320 DELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLK 379
+ L++ +S P++ S + DIFGG +
Sbjct: 181 ESCLQVHRQSDPT--------------------PQDTSPI-----------HDIFGGWWR 209
Query: 380 SVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GV 437
S +K S T PFL + LDI S ++ AL E L G G
Sbjct: 210 SQIKCLHCQGTSHTFDPFLDVPLDISS--AQSVNQALWDTGKSEELLGENAYYCGRCRQK 267
Query: 438 VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKY 497
+ A K++ + K+L+L L RFS + KL + V +P L L + L P+ Y
Sbjct: 268 MPASKTLHVHIAPKVLLLVLKRFSAFT--GNKLDRKVSYPEFLDL-KPYLSEPTGGPLPY 324
Query: 498 ELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 554
L A + H G + GHY + + +W DD VT + VL++ AYVLFY Q
Sbjct: 325 ALYAVLVHDGATSNSGHYFCCVKAGHGKWYKMDDTKVTRCDVTSVLNENAYVLFYVQ 381
>sp|Q0WX57|U17LO_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 24 OS=Homo
sapiens GN=USP17L24 PE=1 SV=2
Length = 530
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 144/355 (40%), Gaps = 64/355 (18%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN C++NA+LQ L P +L ++ + L ++
Sbjct: 81 GLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITR------ 134
Query: 262 GSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDE 321
++ + G PS +A+ F R +QEDA EFL F +D M
Sbjct: 135 --------ALHNPGHVIQPS--QALAAGF---------HRGKQEDAHEFLMFTVDAMKKA 175
Query: 322 LLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSV 381
L P +K ++ + + IFGG +S
Sbjct: 176 CL-----------------------------PGHKQVDHHSKD--TTLIHQIFGGYWRSQ 204
Query: 382 VKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVT 439
+K + S T P+L + LDI +A +++ AL PE L G G
Sbjct: 205 IKCLHCHGISDTFDPYLDIALDI--QAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAP 262
Query: 440 AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYEL 499
A K++ + T +K+LIL L RFS K+ K+V++P L + + + P+ Y L
Sbjct: 263 ASKTLTLHTSAKVLILVLKRFS--DVTGNKIAKNVQYPECLDM-QPYMSQPNTGPLVYVL 319
Query: 500 VATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 554
A + H G GHY + + QW DDA VTA + VL QAYVLFY Q
Sbjct: 320 YAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQ 374
>sp|B3NC86|UBP36_DROER Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila erecta
GN=Usp36 PE=3 SV=1
Length = 1085
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 148/358 (41%), Gaps = 59/358 (16%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLL----QELRTRDIPKAGYPTLTAFVGFVSDFDT 258
G+IN GN C+LN+TLQAL+ L L ++ ++G + +
Sbjct: 174 GMINVGNTCYLNSTLQALLHIPALANWLVSEQAHLENCNVAESGGGCIVCAMAKTL---- 229
Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
+ + N S + RPF + + LK + + GR QEDA EFL F+++ M
Sbjct: 230 ----LATQSNQSAV---RPF---LIYSKLKQICKHM---VVGR--QEDAHEFLRFLVEAM 274
Query: 319 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
L + E D+ V T + L IFGG L
Sbjct: 275 ERAYL-------------MRFRNYKELDQL----------VKET-----TPLGQIFGGYL 306
Query: 379 KSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGV 437
+S V+ N S T Q F L LDI T+EDA + E LE G
Sbjct: 307 RSEVRCLSCNHVSITFQHFQDLLLDI--RKADTLEDAFEGHFSRERLEDMGYKCEGCKKK 364
Query: 438 VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGR-- 495
V+A K ++ L + L RFS KL K + F ++ L + +P+A+ +
Sbjct: 365 VSATKQFSLERAPITLCIQLKRFSMIG---NKLTKQISFKPRIDLSKYAARSPAAQAQPL 421
Query: 496 KYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 553
Y LV+ VTH G GHYTA + +FDD+ V I V + AY++FY+
Sbjct: 422 TYRLVSMVTHLGVSQHCGHYTAIGSTDTGSYYNFDDSYVRPIAMQSVCNTNAYIMFYE 479
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,166,073
Number of Sequences: 539616
Number of extensions: 8779311
Number of successful extensions: 16991
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 16054
Number of HSP's gapped (non-prelim): 665
length of query: 555
length of database: 191,569,459
effective HSP length: 123
effective length of query: 432
effective length of database: 125,196,691
effective search space: 54084970512
effective search space used: 54084970512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)