Query 008741
Match_columns 555
No_of_seqs 274 out of 1285
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 15:59:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 1.7E-61 3.6E-66 498.6 23.3 302 198-554 105-409 (545)
2 cd02663 Peptidase_C19G A subfa 100.0 1.5E-56 3.2E-61 457.3 27.9 286 203-553 1-300 (300)
3 cd02660 Peptidase_C19D A subfa 100.0 5.7E-56 1.2E-60 459.0 30.8 300 202-553 1-328 (328)
4 cd02657 Peptidase_C19A A subfa 100.0 6.8E-56 1.5E-60 453.8 27.8 289 203-553 1-305 (305)
5 cd02668 Peptidase_C19L A subfa 100.0 1.3E-55 2.8E-60 455.2 28.7 286 203-553 1-324 (324)
6 cd02664 Peptidase_C19H A subfa 100.0 1.2E-55 2.6E-60 455.7 26.3 274 203-553 1-327 (327)
7 cd02658 Peptidase_C19B A subfa 100.0 5.4E-55 1.2E-59 448.4 29.8 291 203-553 1-311 (311)
8 cd02671 Peptidase_C19O A subfa 100.0 5.3E-55 1.1E-59 449.3 27.8 274 200-553 23-332 (332)
9 cd02667 Peptidase_C19K A subfa 100.0 7.6E-55 1.6E-59 440.1 24.5 249 203-553 1-279 (279)
10 cd02661 Peptidase_C19E A subfa 100.0 4.6E-54 1E-58 439.5 28.7 299 201-553 1-304 (304)
11 COG5560 UBP12 Ubiquitin C-term 100.0 1.2E-55 2.6E-60 454.9 15.5 322 199-554 263-821 (823)
12 cd02669 Peptidase_C19M A subfa 100.0 4.5E-53 9.7E-58 451.6 28.7 290 200-553 118-440 (440)
13 cd02659 peptidase_C19C A subfa 100.0 2.2E-52 4.7E-57 433.3 28.7 293 200-555 1-332 (334)
14 COG5533 UBP5 Ubiquitin C-termi 100.0 4E-51 8.7E-56 390.4 21.4 328 196-555 66-414 (415)
15 cd02662 Peptidase_C19F A subfa 100.0 1.2E-50 2.5E-55 400.4 23.0 212 203-553 1-240 (240)
16 COG5077 Ubiquitin carboxyl-ter 100.0 3E-49 6.5E-54 413.5 7.7 295 195-554 187-510 (1089)
17 cd02674 Peptidase_C19R A subfa 100.0 6.7E-46 1.5E-50 364.3 20.3 200 303-553 21-230 (230)
18 KOG1868 Ubiquitin C-terminal h 100.0 3.3E-46 7.1E-51 402.6 17.4 328 195-555 295-646 (653)
19 KOG0944 Ubiquitin-specific pro 100.0 2E-44 4.2E-49 375.3 20.0 304 196-555 302-762 (763)
20 cd02665 Peptidase_C19I A subfa 100.0 1.6E-44 3.5E-49 349.1 17.4 199 303-553 21-228 (228)
21 cd02666 Peptidase_C19J A subfa 100.0 5.7E-45 1.2E-49 374.5 14.8 276 201-553 1-343 (343)
22 PF00443 UCH: Ubiquitin carbox 100.0 1.5E-43 3.3E-48 352.9 22.4 253 201-552 1-269 (269)
23 cd02673 Peptidase_C19Q A subfa 100.0 1E-43 2.2E-48 349.9 19.9 211 300-553 29-245 (245)
24 KOG1873 Ubiquitin-specific pro 100.0 3E-45 6.6E-50 384.6 7.5 349 193-555 197-877 (877)
25 cd02257 Peptidase_C19 Peptidas 100.0 1.9E-41 4.1E-46 333.4 21.8 220 303-553 21-255 (255)
26 KOG1867 Ubiquitin-specific pro 100.0 9.8E-42 2.1E-46 362.1 17.3 310 197-554 157-483 (492)
27 KOG1866 Ubiquitin carboxyl-ter 100.0 3.9E-42 8.4E-47 360.0 4.2 298 194-555 88-434 (944)
28 KOG1870 Ubiquitin C-terminal h 100.0 9.7E-39 2.1E-43 362.1 16.2 325 195-555 240-841 (842)
29 KOG1863 Ubiquitin carboxyl-ter 100.0 6.7E-39 1.5E-43 371.8 12.9 344 149-555 105-485 (1093)
30 COG5207 UBP14 Isopeptidase T [ 100.0 6.2E-38 1.3E-42 316.5 17.3 297 201-555 303-749 (749)
31 cd02672 Peptidase_C19P A subfa 100.0 7.3E-36 1.6E-40 297.9 21.4 237 199-553 13-268 (268)
32 KOG4598 Putative ubiquitin-spe 100.0 1.1E-37 2.4E-42 323.3 1.8 272 195-555 81-441 (1203)
33 KOG1871 Ubiquitin-specific pro 100.0 3.8E-35 8.3E-40 290.1 16.1 352 198-555 25-419 (420)
34 cd02670 Peptidase_C19N A subfa 100.0 1.1E-34 2.4E-39 282.8 15.7 139 393-553 63-241 (241)
35 PF13423 UCH_1: Ubiquitin carb 100.0 1.8E-33 3.8E-38 286.6 23.6 283 202-534 1-295 (295)
36 KOG1864 Ubiquitin-specific pro 100.0 8.4E-32 1.8E-36 290.5 18.5 331 198-554 229-571 (587)
37 KOG1872 Ubiquitin-specific pro 100.0 7.9E-30 1.7E-34 259.0 7.0 298 200-553 104-467 (473)
38 KOG2026 Spindle pole body prot 99.9 6.7E-24 1.4E-28 209.6 12.3 287 200-554 133-440 (442)
39 KOG1275 PAB-dependent poly(A) 99.7 3.5E-17 7.6E-22 176.5 16.9 321 199-552 497-860 (1118)
40 KOG3556 Familial cylindromatos 99.1 3.7E-11 8.1E-16 123.3 3.5 130 97-228 233-395 (724)
41 KOG1871 Ubiquitin-specific pro 98.9 1.4E-10 3.1E-15 116.3 -0.9 376 1-426 1-404 (420)
42 PF15499 Peptidase_C98: Ubiqui 98.5 1.2E-06 2.6E-11 84.1 11.8 129 369-533 122-252 (275)
43 KOG1864 Ubiquitin-specific pro 96.8 0.0033 7.1E-08 69.3 7.7 31 204-234 34-64 (587)
44 KOG1887 Ubiquitin carboxyl-ter 96.0 0.00093 2E-08 74.0 -2.0 221 303-553 548-788 (806)
45 PF08715 Viral_protease: Papai 95.1 0.34 7.3E-06 49.6 12.7 21 300-320 159-179 (320)
46 PF05408 Peptidase_C28: Foot-a 91.8 0.095 2.1E-06 48.3 1.9 28 511-539 137-164 (193)
47 PF12478 DUF3697: Ubiquitin-as 85.5 0.29 6.4E-06 31.6 0.3 16 42-57 18-33 (33)
48 PF05408 Peptidase_C28: Foot-a 80.5 3.2 6.9E-05 38.5 5.0 21 202-222 34-54 (193)
49 PF03292 Pox_P4B: Poxvirus P4B 77.6 3.5 7.5E-05 45.0 5.0 79 451-541 479-577 (666)
50 PF02099 Josephin: Josephin; 49.9 20 0.00044 32.8 3.7 32 500-537 100-131 (157)
51 COG3478 Predicted nucleic-acid 41.1 24 0.00053 26.9 2.3 37 427-463 5-41 (68)
52 PF01473 CW_binding_1: Putativ 35.8 38 0.00082 19.0 2.1 15 518-533 3-17 (19)
53 PF10748 DUF2531: Protein of u 28.6 68 0.0015 28.4 3.4 35 494-534 33-67 (132)
54 PF09855 DUF2082: Nucleic-acid 23.1 71 0.0015 24.6 2.2 35 427-461 1-35 (64)
55 KOG2935 Ataxin 3/Josephin [Gen 21.5 13 0.00028 36.2 -2.5 28 500-533 104-131 (315)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-61 Score=498.59 Aligned_cols=302 Identities=34% Similarity=0.529 Sum_probs=263.4
Q ss_pred CCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCC
Q 008741 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQEL-RTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGR 276 (555)
Q Consensus 198 ~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~-~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 276 (555)
...++||.|+|||||+|||||||.++|+|.++|+.. +...+.....|++|+|+..+..-... .+.
T Consensus 105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~--------------~g~ 170 (545)
T KOG1865|consen 105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHN--------------PGH 170 (545)
T ss_pred ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcC--------------CCC
Confidence 346799999999999999999999999999999865 44445568899999999988754322 235
Q ss_pred CCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCC
Q 008741 277 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNK 356 (555)
Q Consensus 277 ~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (555)
++.|..++..|+.+...| +.++|+||||||++++|.|+...+.... ..
T Consensus 171 pisP~~i~s~L~~I~~~f-----~~grQEDAHEFLr~~vd~mqk~cL~g~~--~~------------------------- 218 (545)
T KOG1865|consen 171 PISPSQILSNLRNISAHF-----GRGRQEDAHEFLRFTVDAMQKACLPGHK--QV------------------------- 218 (545)
T ss_pred ccChHHHHHhhhhhcccc-----cCCchhhHHHHHHHHHHHHHHhhcCCCc--cC-------------------------
Confidence 999999999999999887 7889999999999999999998752111 00
Q ss_pred cccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcccccCCCC-C
Q 008741 357 SAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTG-N 434 (555)
Q Consensus 357 ~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c~~c~-~ 434 (555)
.......++|+++|+|.+++.|+| .|.+++.++|+.++|+|.|. ...+|++||++|++.|.++|.+.+.|+ |
T Consensus 219 ----~~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~dltvei~--d~~sl~~AL~qFt~~E~L~gen~Y~C~~C 292 (545)
T KOG1865|consen 219 ----DPRSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLDLTLEIQ--DASSLQQALEQFTKPEKLDGENAYHCGRC 292 (545)
T ss_pred ----CcccccceehhhhhccchhhceecccCCCcccccccccceEEEec--cchhHHHHHHHhhhHHhhCCccccccchh
Confidence 001112357999999999999999 89999999999999999997 678999999999999999985555553 4
Q ss_pred CcceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEeeCCCCCce
Q 008741 435 AGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGH 514 (555)
Q Consensus 435 ~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sGH 514 (555)
+.+++|.|+++|.++|+||+||||||.. ++..||+++|.||+.|||.+|+. .+...+..|.|+|||+|.|.+..+||
T Consensus 293 k~~v~A~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fPE~LDl~PyMS-~~~e~s~~Y~LYavlVH~g~~~~~GH 369 (545)
T KOG1865|consen 293 KQKVPASKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFPETLDLQPYMS-QPNEGSTVYKLYAVLVHLGTSCHSGH 369 (545)
T ss_pred hhhCcccceeeeecCCceEEEeeehhcc--CcccccccccCCccccccccccc-CCCCCCceEEEEEEEEeccccccCCc
Confidence 7788999999999999999999999997 56789999999999999999987 55677899999999999999999999
Q ss_pred EEEEEecCCCcEEEEeCCCceeeCcccccCCCcEEEEEEE
Q 008741 515 YTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 554 (555)
Q Consensus 515 Yva~vr~~~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~R 554 (555)
|+||||..+|+||.+||+.|+.++.+.|+++.||||||.|
T Consensus 370 Y~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R 409 (545)
T KOG1865|consen 370 YFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYILFYAR 409 (545)
T ss_pred eEEEEEcCCCceEEccCceeeeccccceecccceEEEEEe
Confidence 9999999999999999999999999999999999999998
No 2
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-56 Score=457.32 Aligned_cols=286 Identities=33% Similarity=0.468 Sum_probs=237.9
Q ss_pred ccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCCChHH
Q 008741 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 282 (555)
Q Consensus 203 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v~p~~ 282 (555)
||.|+||||||||+||+|++ .+++++|+.|+..|+.... ...+++|..
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~--------------------~~l~~~L~~lf~~l~~~~~------------~~~~isP~~ 48 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF--------------------ENLLTCLKDLFESISEQKK------------RTGVISPKK 48 (300)
T ss_pred CccCCCcceehhHHHHHhhh--------------------HHHHHHHHHHHHHHHhCCC------------CCeeECHHH
Confidence 89999999999999999987 4677889999999875431 125799999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcccccc
Q 008741 283 FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 362 (555)
Q Consensus 283 ~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (555)
|..+++...|.| ..++||||||||.+|||.|++++.+........ . ...+.. .
T Consensus 49 f~~~l~~~~~~f-----~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~---~--------~~~~~~-----------~ 101 (300)
T cd02663 49 FITRLKRENELF-----DNYMHQDAHEFLNFLLNEIAEILDAERKAEKAN---R--------KLNNNN-----------N 101 (300)
T ss_pred HHHHHHhhcCCC-----CCCccccHHHHHHHHHHHHHHHHHHHhhccccc---c--------cccccc-----------c
Confidence 999999888876 788999999999999999999987654321100 0 000000 0
Q ss_pred cccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcc---cccCCCCCCcce
Q 008741 363 QSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAGVV 438 (555)
Q Consensus 363 ~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g---~~c~~c~~~~~~ 438 (555)
.....++|.++|+|++.+.++| .|++.+.+.|+|++|+|+|+. ..+|+++|+.|+.+|.+++ +.|+.|+ ..+
T Consensus 102 ~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~Lsl~i~~--~~sl~~~L~~~~~~E~l~~~~~~~C~~C~--~~~ 177 (300)
T cd02663 102 AEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQ--NTSITSCLRQFSATETLCGRNKFYCDECC--SLQ 177 (300)
T ss_pred CCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEeccCCCC--cCCHHHHHHHhhcccccCCCCcEECCCCC--Cce
Confidence 1113456999999999999999 899999999999999999985 5799999999999999987 5677664 456
Q ss_pred eEEEEEEeccCCceEEEEEeeeEeCCC--CceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEeeCCCCCceEE
Q 008741 439 TAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYT 516 (555)
Q Consensus 439 ~a~k~~~i~~lP~vLiI~L~Rf~~~~~--~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sGHYv 516 (555)
.+.++..|.++|+||+|||+||.++.. ...|+..+|.||.+|++..+.. ........|+|+|||+|.|.++++|||+
T Consensus 178 ~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~-~~~~~~~~Y~L~~vi~H~G~~~~~GHY~ 256 (300)
T cd02663 178 EAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTD-DAENPDRLYELVAVVVHIGGGPNHGHYV 256 (300)
T ss_pred eEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEecccccc-ccCCCCeEEEEEEEEEEecCCCCCCceE
Confidence 899999999999999999999999843 4689999999999999987632 2234467999999999999878999999
Q ss_pred EEEecCCCcEEEEeCCCceeeCccccc--------CCCcEEEEEE
Q 008741 517 ADARYFNDQWLHFDDASVTAIGTSKVL--------HDQAYVLFYK 553 (555)
Q Consensus 517 a~vr~~~~~W~~fnDs~V~~vs~~~v~--------~~~aYlLfY~ 553 (555)
||+|. +++||+|||+.|++++.++|. ..+||||||+
T Consensus 257 a~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 257 SIVKS-HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred EEEEC-CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 99999 889999999999999998886 4799999996
No 3
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.7e-56 Score=459.02 Aligned_cols=300 Identities=32% Similarity=0.485 Sum_probs=253.3
Q ss_pred cccccCCCchhHHHHHHHHhCChHHHHHHHhhhcc---CCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCC
Q 008741 202 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPF 278 (555)
Q Consensus 202 ~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~---~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v 278 (555)
+||.|+||||||||+||+|+++|+|+++++..... .......++.++|..|+..++... ....+
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-------------~~~~~ 67 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSG-------------DRSPY 67 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCC-------------CCCCc
Confidence 69999999999999999999999999999875322 123445689999999999984221 12578
Q ss_pred ChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcc
Q 008741 279 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSA 358 (555)
Q Consensus 279 ~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (555)
.|..++..+....+.| .++.||||||||.+||+.|++++.+......
T Consensus 68 ~~~~~l~~~~~~~~~f-----~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~---------------------------- 114 (328)
T cd02660 68 GPINLLYLSWKHSRNL-----AGYSQQDAHEFFQFLLDQLHTHYGGDKNEAN---------------------------- 114 (328)
T ss_pred CHHHHHHHHHhhchhh-----cccccccHHHHHHHHHHHHHHHhhccccccc----------------------------
Confidence 9999999998877765 7789999999999999999999864332100
Q ss_pred cccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeecccc-------------ccCHHHHHHhhcCCcCC
Q 008741 359 VTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA-------------VHTIEDALRLFSAPENL 424 (555)
Q Consensus 359 ~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~-------------~~sLe~~L~~~~~~E~l 424 (555)
......++|+++|+|++.+.++| .|++.+.+.++|+.|+|+|+... ..+|+++|+.|+.+|.+
T Consensus 115 ---~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~ 191 (328)
T cd02660 115 ---DESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKL 191 (328)
T ss_pred ---ccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCcccc
Confidence 00012356999999999999999 89999999999999999998642 38999999999999999
Q ss_pred ccc--ccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCC-CCceeccceeeeCceeecCCcccc--------CCCCC
Q 008741 425 EGY--RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS-QGSTKLHKSVRFPLQLVLGRDLLV--------TPSAE 493 (555)
Q Consensus 425 ~g~--~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~-~~~~Ki~~~V~fp~~Ldl~~~~~~--------~~~~~ 493 (555)
++. .|+.|+. .+.+.++..|.++|++|+|||+||.++. ....|+...|.||.+|||.+|+.. .....
T Consensus 192 ~~~~~~C~~C~~--~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~ 269 (328)
T cd02660 192 GDFAYKCSGCGS--TQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDP 269 (328)
T ss_pred CCCCccCCCCCC--ccceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhhhcccccccccccccCCC
Confidence 875 5776654 5589999999999999999999999986 456899999999999999998874 22356
Q ss_pred CccEEEEEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceeeCcccccCCCcEEEEEE
Q 008741 494 GRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 553 (555)
Q Consensus 494 ~~~Y~L~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~ 553 (555)
...|+|+|||+|+|. .++|||+||+|..+++||+|||+.|+++++++|+..+||||||.
T Consensus 270 ~~~Y~L~avi~H~G~-~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 270 DYTYDLFAVVVHKGT-LDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred CceEEEEEEEEeecc-CCCCcEEEEEECCCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 789999999999998 78999999999987899999999999999999999999999994
No 4
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.8e-56 Score=453.85 Aligned_cols=289 Identities=28% Similarity=0.432 Sum_probs=243.8
Q ss_pred ccccCCCchhHHHHHHHHhCChHHHHHHHhhhccC--CCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCCCh
Q 008741 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD--IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSP 280 (555)
Q Consensus 203 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~--~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v~p 280 (555)
||.|+||||||||+||+|+++|+|+++++...... ......++.++|+.|+..|+... ..+.|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~---------------~~i~p 65 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQ---------------EPVPP 65 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCC---------------CcCCc
Confidence 89999999999999999999999999998764321 22345689999999999987432 57999
Q ss_pred HHHHHHHHhcCCCCCCCCC-CCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCccc
Q 008741 281 SMFEAVLKNFTPDVPNSIS-GRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (555)
Q Consensus 281 ~~~~~~l~~~~p~~~~~~~-~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (555)
..|...++...+.|..... ..++|||||||+..|||.|++++.....
T Consensus 66 ~~~~~~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~~-------------------------------- 113 (305)
T cd02657 66 IEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGS-------------------------------- 113 (305)
T ss_pred HHHHHHHHHHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhcccCC--------------------------------
Confidence 9999999998888743222 4569999999999999999999743100
Q ss_pred ccccccCCcccccccccEEeEEEEe-cCC-ccceeeecceeeeeeeccc-cccCHHHHHHhhcCCcCCcccccCCCCCCc
Q 008741 360 TRTQSFLPSALSDIFGGQLKSVVKA-QGN-KASATVQPFLLLHLDIYSE-AVHTIEDALRLFSAPENLEGYRTSSTGNAG 436 (555)
Q Consensus 360 ~~~~~~~~s~I~~lF~G~l~s~i~C-~c~-~~s~~~e~f~~LsL~I~~~-~~~sLe~~L~~~~~~E~l~g~~c~~c~~~~ 436 (555)
..++|.++|+|++.+.++| .|+ ..+.+.|+|++|+|+|+.. ...+|+++|+.++.++.. ..|+.|+.
T Consensus 114 ------~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~-- 183 (305)
T cd02657 114 ------KGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIE--KHSPTLGR-- 183 (305)
T ss_pred ------CCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEEeecCCCcccccHHHHHHHhhhhhhh--hcCcccCC--
Confidence 1235899999999999999 788 7899999999999999854 256899999999976654 36776654
Q ss_pred ceeEEEEEEeccCCceEEEEEeeeEeCC--CCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEeeCCCCCce
Q 008741 437 VVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGH 514 (555)
Q Consensus 437 ~~~a~k~~~i~~lP~vLiI~L~Rf~~~~--~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sGH 514 (555)
...+.++.+|.++|++|+|||+||.++. ....|+.+.|.||.+|||.+|+. ....|+|+|||+|.|.++.+||
T Consensus 184 ~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~-----~~~~Y~L~~vI~H~G~~~~~GH 258 (305)
T cd02657 184 DAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCT-----PSGYYELVAVITHQGRSADSGH 258 (305)
T ss_pred CceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccC-----CCCcEEEEEEEEecCCCCCCcE
Confidence 3478899999999999999999999883 34679999999999999998874 4679999999999998789999
Q ss_pred EEEEEecCC-CcEEEEeCCCceeeCcccccC-------CCcEEEEEE
Q 008741 515 YTADARYFN-DQWLHFDDASVTAIGTSKVLH-------DQAYVLFYK 553 (555)
Q Consensus 515 Yva~vr~~~-~~W~~fnDs~V~~vs~~~v~~-------~~aYlLfY~ 553 (555)
|+||+|..+ ++||.|||+.|++++.++|.. ..||||||+
T Consensus 259 Y~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 259 YVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred EEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 999999975 899999999999999999974 599999996
No 5
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-55 Score=455.21 Aligned_cols=286 Identities=26% Similarity=0.419 Sum_probs=239.8
Q ss_pred ccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCC----------CCCCCcHHHHHHHHHHHhcCCCCCCCcccccccc
Q 008741 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDI----------PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272 (555)
Q Consensus 203 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~----------~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~ 272 (555)
||.|+||||||||+||+|+++|+||++++....... +....+++++|+.|+..|+...
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~------------ 68 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGN------------ 68 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCC------------
Confidence 899999999999999999999999999986543221 0123578999999999997443
Q ss_pred CCCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhC
Q 008741 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVG 352 (555)
Q Consensus 273 ~~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (555)
..+++|..|...++ + ..++||||+|||.+|||.|++++......
T Consensus 69 --~~~i~p~~f~~~l~-----~-----~~~~QqDa~EFl~~lLd~L~~~l~~~~~~------------------------ 112 (324)
T cd02668 69 --RSVVDPSGFVKALG-----L-----DTGQQQDAQEFSKLFLSLLEAKLSKSKNP------------------------ 112 (324)
T ss_pred --CceEChHHHHHHhC-----C-----CCccccCHHHHHHHHHHHHHHHHhhccCC------------------------
Confidence 26789999988873 2 45699999999999999999998532110
Q ss_pred CCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcc---cc
Q 008741 353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YR 428 (555)
Q Consensus 353 ~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g---~~ 428 (555)
...++|.++|.|++.+.++| .|++.+.+.++|+.|+|+|+. ..+|+++|+.|+.+|.++| +.
T Consensus 113 ------------~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~--~~sl~~~L~~~~~~e~l~g~~~~~ 178 (324)
T cd02668 113 ------------DLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKG--HKTLEECIDEFLKEEQLTGDNQYF 178 (324)
T ss_pred ------------cccchhhhhcceEEEEEEEeCCCCCccccccccEEEEEEecc--cCCHHHHHHHhhCceecCCCcccc
Confidence 01245899999999999999 799999999999999999973 5799999999999999987 45
Q ss_pred cCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCC--CCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEe
Q 008741 429 TSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHH 506 (555)
Q Consensus 429 c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~--~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~ 506 (555)
|+.| ..++.+.++..|.++|+||+|||+||.++. +...|++..|.||..|||.+|+... ......|+|+|||+|.
T Consensus 179 C~~C--~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~-~~~~~~Y~L~~vI~H~ 255 (324)
T cd02668 179 CESC--NSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAES-DEGSYVYELSGVLIHQ 255 (324)
T ss_pred CCCC--CceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhhcccc-cCCCcEEEEEEEEEEc
Confidence 6666 446689999999999999999999999983 4568999999999999999987443 3457899999999999
Q ss_pred eCCCCCceEEEEEecC-CCcEEEEeCCCceeeCcccc---------------------cCCCcEEEEEE
Q 008741 507 GRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKV---------------------LHDQAYVLFYK 553 (555)
Q Consensus 507 G~s~~sGHYva~vr~~-~~~W~~fnDs~V~~vs~~~v---------------------~~~~aYlLfY~ 553 (555)
|.++++|||+||+|.. +++||+|||+.|++++.+.+ .+.+||||||+
T Consensus 256 G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 256 GVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred CCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 9888999999999986 58999999999999987655 23599999996
No 6
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-55 Score=455.67 Aligned_cols=274 Identities=29% Similarity=0.477 Sum_probs=229.3
Q ss_pred ccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCCChHH
Q 008741 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 282 (555)
Q Consensus 203 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v~p~~ 282 (555)
||.|+||||||||+||+|+++|+||+++++..... .....++..+|+.++..+..... .++.|..
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~-~~~~~~~~~~L~~lf~~l~~~~~--------------~~~~~~~ 65 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPR-LGDSQSVMKKLQLLQAHLMHTQR--------------RAEAPPD 65 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccc-cCCcchHHHHHHHHHHHHhhcCC--------------cccCCHH
Confidence 89999999999999999999999999998765321 12345677888888887753321 4455554
Q ss_pred -HHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCccccc
Q 008741 283 -FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTR 361 (555)
Q Consensus 283 -~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (555)
+...+. .+. |..+.||||||||.+||+.|+.
T Consensus 66 ~~l~~~~--~~~-----f~~~~QqDa~EFl~~lLd~l~~----------------------------------------- 97 (327)
T cd02664 66 YFLEASR--PPW-----FTPGSQQDCSEYLRYLLDRLHT----------------------------------------- 97 (327)
T ss_pred HHHHHhc--ccc-----cCCCCcCCHHHHHHHHHHHHHH-----------------------------------------
Confidence 444332 233 3678999999999999999982
Q ss_pred ccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcc---cccCCCCCCcc
Q 008741 362 TQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAGV 437 (555)
Q Consensus 362 ~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g---~~c~~c~~~~~ 437 (555)
+|.++|+|++.+.++| .|+..+.+.|+|.+|+|+|| +|+++|+.|+.+|.++| +.|+.|+. .
T Consensus 98 -------~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~-----sl~~~l~~~~~~E~l~g~n~~~C~~C~~--~ 163 (327)
T cd02664 98 -------LIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP-----SVQDLLNYFLSPEKLTGDNQYYCEKCAS--L 163 (327)
T ss_pred -------HHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC-----CHHHHHHHhcCeeEccCCCceeCCccCC--c
Confidence 2789999999999999 89999999999999999997 89999999999999987 67777754 5
Q ss_pred eeEEEEEEeccCCceEEEEEeeeEeCC--CCceeccceeeeCceeecCCccccC------------------CCCCCccE
Q 008741 438 VTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVT------------------PSAEGRKY 497 (555)
Q Consensus 438 ~~a~k~~~i~~lP~vLiI~L~Rf~~~~--~~~~Ki~~~V~fp~~Ldl~~~~~~~------------------~~~~~~~Y 497 (555)
+.+.++..|.++|+||+|||+||.++. +...|+.++|.||..|||..++... .......|
T Consensus 164 ~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 243 (327)
T cd02664 164 QDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHY 243 (327)
T ss_pred cceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCccccccccccccccccccccccccccCCCceE
Confidence 589999999999999999999999984 3468999999999999998886421 11346799
Q ss_pred EEEEEEEEeeCCCCCceEEEEEecCC---------------------CcEEEEeCCCceeeCcccccC-------CCcEE
Q 008741 498 ELVATVTHHGRDPSKGHYTADARYFN---------------------DQWLHFDDASVTAIGTSKVLH-------DQAYV 549 (555)
Q Consensus 498 ~L~gvI~H~G~s~~sGHYva~vr~~~---------------------~~W~~fnDs~V~~vs~~~v~~-------~~aYl 549 (555)
+|+|||+|.|.++++|||+||+|.+. ++||+|||+.|++++.++|.+ .+|||
T Consensus 244 ~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYl 323 (327)
T cd02664 244 RLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYI 323 (327)
T ss_pred EEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEE
Confidence 99999999998789999999999854 789999999999999999986 79999
Q ss_pred EEEE
Q 008741 550 LFYK 553 (555)
Q Consensus 550 LfY~ 553 (555)
|||+
T Consensus 324 LfY~ 327 (327)
T cd02664 324 LFYE 327 (327)
T ss_pred EEeC
Confidence 9996
No 7
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.4e-55 Score=448.39 Aligned_cols=291 Identities=25% Similarity=0.382 Sum_probs=239.9
Q ss_pred ccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCC---CCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCCC
Q 008741 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDI---PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 279 (555)
Q Consensus 203 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~---~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v~ 279 (555)
||.|+||||||||+||||+++|+||++|+....... .....++.+.|.+|+..|+...................++.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 899999999999999999999999999976432111 12345788999999988864322111000011122346899
Q ss_pred hHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCccc
Q 008741 280 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (555)
Q Consensus 280 p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (555)
|..|..+++...|.| ..+.||||||||++|||.|++++....
T Consensus 81 p~~~~~~l~~~~~~f-----~~~~QqDa~Efl~~ll~~l~~~~~~~~--------------------------------- 122 (311)
T cd02658 81 PSMFKALIGKGHPEF-----STMRQQDALEFLLHLIDKLDRESFKNL--------------------------------- 122 (311)
T ss_pred cHHHHHHHhccChhh-----cccccccHHHHHHHHHHHHHHhhcccc---------------------------------
Confidence 999999999988887 778999999999999999999874211
Q ss_pred ccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeecccc------------ccCHHHHHHhhcCCcCCcc
Q 008741 360 TRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA------------VHTIEDALRLFSAPENLEG 426 (555)
Q Consensus 360 ~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~------------~~sLe~~L~~~~~~E~l~g 426 (555)
...+.++|.|++.+.++| .|+..+.+.++|.+|+|+++... ..+|+++|+.|+..|.+++
T Consensus 123 -------~~~~~~~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~~ 195 (311)
T cd02658 123 -------GLNPNDLFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIED 195 (311)
T ss_pred -------cCCchhheEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCcccccc
Confidence 013779999999999999 78888899999999999998543 3599999999999999985
Q ss_pred cccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeC-CCCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEE
Q 008741 427 YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG-SQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTH 505 (555)
Q Consensus 427 ~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~-~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H 505 (555)
.|..| +.++.+.++.+|.++|+||+|||+||.++ .....|+...|.||..| ....|+|+|||+|
T Consensus 196 -~C~~C--~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l------------~~~~Y~L~~vI~H 260 (311)
T cd02658 196 -FCSTC--KEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEEL------------GPGKYELIAFISH 260 (311)
T ss_pred -cccCC--CCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcC------------CCCcEEEEEEEEc
Confidence 45556 45668999999999999999999999996 45578999999999877 2468999999999
Q ss_pred eeCCCCCceEEEEEecC---CCcEEEEeCCCceeeCcccccCCCcEEEEEE
Q 008741 506 HGRDPSKGHYTADARYF---NDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 553 (555)
Q Consensus 506 ~G~s~~sGHYva~vr~~---~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~ 553 (555)
.|.++++|||+||+|.. +++||+|||+.|++++..+|...+||||||+
T Consensus 261 ~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 261 KGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred cCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 99889999999999996 3899999999999999999999999999996
No 8
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.3e-55 Score=449.31 Aligned_cols=274 Identities=27% Similarity=0.393 Sum_probs=226.2
Q ss_pred CCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCCC
Q 008741 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 279 (555)
Q Consensus 200 ~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v~ 279 (555)
..+||.|+||||||||+||+|+++|.||+.+....... ........+..++..++... .....
T Consensus 23 ~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~---~~~~~~q~~~~~l~~~~~~~--------------~~~~~ 85 (332)
T cd02671 23 PFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI---SSVEQLQSSFLLNPEKYNDE--------------LANQA 85 (332)
T ss_pred CCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc---CcHHHHHHHHHHHHHHHhhc--------------ccccC
Confidence 46899999999999999999999999999987654211 00111122222233333211 13457
Q ss_pred hHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCccc
Q 008741 280 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (555)
Q Consensus 280 p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (555)
|..|...++..+|.| ..+.||||||||.+|||.|+..
T Consensus 86 P~~~~~~l~~~~~~f-----~~~~QQDA~EFl~~LLd~L~~~-------------------------------------- 122 (332)
T cd02671 86 PRRLLNALREVNPMY-----EGYLQHDAQEVLQCILGNIQEL-------------------------------------- 122 (332)
T ss_pred HHHHHHHHHHhcccc-----CCccccCHHHHHHHHHHHHHHH--------------------------------------
Confidence 999999999988876 7789999999999999999842
Q ss_pred ccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeecccc-----------------ccCHHHHHHhhcCC
Q 008741 360 TRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA-----------------VHTIEDALRLFSAP 421 (555)
Q Consensus 360 ~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~-----------------~~sLe~~L~~~~~~ 421 (555)
|.++|+|++.+.++| .|++.+.+.|+|++|+|+|+... ..+|++||+.|+.+
T Consensus 123 ----------i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~ 192 (332)
T cd02671 123 ----------VEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASV 192 (332)
T ss_pred ----------HHhhhceEEEEEEEeCCCCCeeceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCc
Confidence 778999999999999 89999999999999999998542 36899999999999
Q ss_pred cCCcc---cccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCC------CCceeccceeeeCceeecCCccccCCCC
Q 008741 422 ENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS------QGSTKLHKSVRFPLQLVLGRDLLVTPSA 492 (555)
Q Consensus 422 E~l~g---~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~------~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~ 492 (555)
|.++| +.|+.| +.++.+.++..|.++|+||+|||+||.++. +...|++++|.||..|++.++.. ..
T Consensus 193 E~l~g~n~y~C~~C--~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~---~~ 267 (332)
T cd02671 193 ERIVGEDKYFCENC--HHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWST---KP 267 (332)
T ss_pred ceecCCCCeeCCCC--CCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccccccccccC---CC
Confidence 99976 556666 456789999999999999999999999863 34689999999999999986643 23
Q ss_pred CCccEEEEEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceeeCccccc---------CCCcEEEEEE
Q 008741 493 EGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVL---------HDQAYVLFYK 553 (555)
Q Consensus 493 ~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~vs~~~v~---------~~~aYlLfY~ 553 (555)
....|+|+|||+|.|.+.++|||+|||| ||+|||+.|++++++++. ..+||||||+
T Consensus 268 ~~~~Y~L~~VI~H~G~~~~~GHY~a~vr-----W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 268 KNDVYRLFAVVMHSGATISSGHYTAYVR-----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred CCCeEEEEEEEEEcCCCCCCCeEEEEEE-----EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 5689999999999998789999999999 999999999999987764 2599999995
No 9
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.6e-55 Score=440.09 Aligned_cols=249 Identities=31% Similarity=0.493 Sum_probs=217.5
Q ss_pred ccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCCChHH
Q 008741 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 282 (555)
Q Consensus 203 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v~p~~ 282 (555)
||.|+||||||||+||+|+++|+||++++. +|..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~----------------------------------------------~P~~ 34 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE----------------------------------------------TPKE 34 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH----------------------------------------------CHHH
Confidence 899999999999999999999999999876 2455
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcccccc
Q 008741 283 FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 362 (555)
Q Consensus 283 ~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (555)
|...+....+.| ..+.||||+|||.+|||.|+.
T Consensus 35 ~~~~l~~~~~~f-----~~~~QqDA~Efl~~lld~l~~------------------------------------------ 67 (279)
T cd02667 35 LFSQVCRKAPQF-----KGYQQQDSHELLRYLLDGLRT------------------------------------------ 67 (279)
T ss_pred HHHHHHHhhHhh-----cCCchhhHHHHHHHHHHHHHH------------------------------------------
Confidence 666666666665 678999999999999999982
Q ss_pred cccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeecc--ccccCHHHHHHhhcCCcCCcccccCCCCCCccee
Q 008741 363 QSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYS--EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVT 439 (555)
Q Consensus 363 ~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~--~~~~sLe~~L~~~~~~E~l~g~~c~~c~~~~~~~ 439 (555)
+|+++|.|++.+.++| .|++.+.+.|+|++|+|+++. ....+|++||+.|+.+|.++|.+++.|..++.
T Consensus 68 ------~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~-- 139 (279)
T cd02667 68 ------FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK-- 139 (279)
T ss_pred ------hhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc--
Confidence 2789999999999999 899999999999999999864 24679999999999999999855555543332
Q ss_pred EEEEEEeccCCceEEEEEeeeEeCCC-CceeccceeeeCceeecCCccccC----CCCCCccEEEEEEEEEeeCCCCCce
Q 008741 440 AKKSVKIQTLSKILILHLMRFSYGSQ-GSTKLHKSVRFPLQLVLGRDLLVT----PSAEGRKYELVATVTHHGRDPSKGH 514 (555)
Q Consensus 440 a~k~~~i~~lP~vLiI~L~Rf~~~~~-~~~Ki~~~V~fp~~Ldl~~~~~~~----~~~~~~~Y~L~gvI~H~G~s~~sGH 514 (555)
+.++..|.++|++|+|||+||.++.. ...|++.+|.||..|||.+|+... .......|+|+|||+|.|.. ++||
T Consensus 140 a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~-~~GH 218 (279)
T cd02667 140 AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTM-RSGH 218 (279)
T ss_pred eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCCC-CCCE
Confidence 88999999999999999999999844 578999999999999999998652 23457899999999999995 9999
Q ss_pred EEEEEecC----------------------CCcEEEEeCCCceeeCcccccCCCcEEEEEE
Q 008741 515 YTADARYF----------------------NDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 553 (555)
Q Consensus 515 Yva~vr~~----------------------~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~ 553 (555)
|+||+|.. +++||+|||+.|++++.++|...+||||||+
T Consensus 219 Y~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 219 YVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred eEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 99999974 5789999999999999999999999999996
No 10
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.6e-54 Score=439.51 Aligned_cols=299 Identities=34% Similarity=0.536 Sum_probs=250.7
Q ss_pred CcccccCCCchhHHHHHHHHhCChHHHHHHHhhhcc-CCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCCC
Q 008741 201 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 279 (555)
Q Consensus 201 ~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~-~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v~ 279 (555)
|+||.|+||||||||+||+|+++|+|++++++.... .......++.++|..++..++... ...+.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~ 66 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASS--------------GPGSA 66 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCC--------------CCccC
Confidence 689999999999999999999999999999864322 223445678999999988876432 26788
Q ss_pred hHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCccc
Q 008741 280 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (555)
Q Consensus 280 p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (555)
|..|...+..+.+.| ..+.||||+|||.+|||.|++++.........
T Consensus 67 p~~~~~~l~~~~~~f-----~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~---------------------------- 113 (304)
T cd02661 67 PRIFSSNLKQISKHF-----RIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA---------------------------- 113 (304)
T ss_pred hHHHHHHHHHHHHhh-----cCcchhhHHHHHHHHHHHHHHHHhhhcccccc----------------------------
Confidence 999999999888776 77899999999999999999987543221100
Q ss_pred ccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcc---cccCCCCCC
Q 008741 360 TRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNA 435 (555)
Q Consensus 360 ~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g---~~c~~c~~~ 435 (555)
........++|.++|+|++.+.+.| .|+..+.+.++|+.|+|+|+.. .+|+++|+.++.+|.+++ +.|+.|++
T Consensus 114 ~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~~--~~l~~~l~~~~~~e~~~~~~~~~C~~C~~- 190 (304)
T cd02661 114 VDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGA--DSLEDALEQFTKPEQLDGENKYKCERCKK- 190 (304)
T ss_pred cCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCCC--CcHHHHHHHhcCceeeCCCCCeeCCCCCC-
Confidence 0000112346999999999999999 7999999999999999999844 799999999999999887 55666654
Q ss_pred cceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEeeCCCCCceE
Q 008741 436 GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHY 515 (555)
Q Consensus 436 ~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sGHY 515 (555)
...+.++..|.++|++|+|||+||.++ ...|+.+.|.||..|||.+++... ......|+|+|||+|.|.++++|||
T Consensus 191 -~~~~~~~~~i~~~P~iL~i~l~Rf~~~--~~~Ki~~~v~f~~~L~l~~~~~~~-~~~~~~Y~L~~vi~H~G~~~~~GHY 266 (304)
T cd02661 191 -KVKASKQLTIHRAPNVLTIHLKRFSNF--RGGKINKQISFPETLDLSPYMSQP-NDGPLKYKLYAVLVHSGFSPHSGHY 266 (304)
T ss_pred -ccceEEEEEEecCCcEEEEEEeccccC--CccccCCeEecCCeechhhccccC-CCCCceeeEEEEEEECCCCCCCcCC
Confidence 457889999999999999999999988 467999999999999999887542 4567899999999999997799999
Q ss_pred EEEEecCCCcEEEEeCCCceeeCcccccCCCcEEEEEE
Q 008741 516 TADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 553 (555)
Q Consensus 516 va~vr~~~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~ 553 (555)
+||+|.++++||+|||+.|+++++++|+..+||||||.
T Consensus 267 ~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 267 YCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred EEEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence 99999988999999999999999999999999999993
No 11
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-55 Score=454.87 Aligned_cols=322 Identities=29% Similarity=0.452 Sum_probs=280.9
Q ss_pred CCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhh------ccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcccccccc
Q 008741 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELR------TRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272 (555)
Q Consensus 199 ~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~------~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~ 272 (555)
.+.+||+|+||||||||.||||.||+.+|+|++.-. ..........++.+++.|+++++.+.
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~------------ 330 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGN------------ 330 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCcc------------
Confidence 467999999999999999999999999999987432 22222445678899999999998554
Q ss_pred CCCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccC----CCCccccccchhhhhh
Q 008741 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSI----NGANTALVSLAEEDEW 348 (555)
Q Consensus 273 ~~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~----~~~~~~~~~~~~~~~~ 348 (555)
..++.|..|+..++.++..| .|+.|||+|||+.+|||.||++++++..++... .......++..+++.|
T Consensus 331 --~haf~Ps~fK~tIG~fn~~f-----sGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW 403 (823)
T COG5560 331 --LHAFTPSGFKKTIGSFNEEF-----SGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECW 403 (823)
T ss_pred --ccccChHHHHHHHhhhHHHh-----cCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHH
Confidence 27899999999999998776 899999999999999999999999888776543 2344445677899999
Q ss_pred hhhCCCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeecc----------------------
Q 008741 349 ETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYS---------------------- 405 (555)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~---------------------- 405 (555)
..+..+|.+ +|.++|.|.+++++.| .|+.++++++||++|+||+|.
T Consensus 404 ~~H~kRNdS-----------iItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~i 472 (823)
T COG5560 404 WEHLKRNDS-----------IITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKI 472 (823)
T ss_pred HHHHhcCcc-----------cHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEE
Confidence 999999987 4899999999999999 899999999999999999973
Q ss_pred --------------------------------------------------------------------------------
Q 008741 406 -------------------------------------------------------------------------------- 405 (555)
Q Consensus 406 -------------------------------------------------------------------------------- 405 (555)
T Consensus 473 el~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~g 552 (823)
T COG5560 473 ELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKG 552 (823)
T ss_pred EEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEecccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 008741 406 -------------------------------------------------------------------------------- 405 (555)
Q Consensus 406 -------------------------------------------------------------------------------- 405 (555)
T Consensus 553 Yks~rlFg~pflqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~vee 632 (823)
T COG5560 553 YKSKRLFGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEE 632 (823)
T ss_pred ccchhhhCCcceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhh
Confidence
Q ss_pred ---------------------------------------ccccCHHHHHHhhcCCcCCcc---cccCCCCCCcceeEEEE
Q 008741 406 ---------------------------------------EAVHTIEDALRLFSAPENLEG---YRTSSTGNAGVVTAKKS 443 (555)
Q Consensus 406 ---------------------------------------~~~~sLe~~L~~~~~~E~l~g---~~c~~c~~~~~~~a~k~ 443 (555)
...+||++||..|..+|.+.- |.|+.| ++.+.|.|+
T Consensus 633 E~~~n~nd~vvi~cew~ek~y~~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgC--kefrqasKq 710 (823)
T COG5560 633 EGQMNFNDAVVISCEWEEKRYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGC--KEFRQASKQ 710 (823)
T ss_pred hhccCCCcceEEeeeccccchhhhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCch--Hhhhhhhhh
Confidence 135799999999999999864 556655 778899999
Q ss_pred EEeccCCceEEEEEeeeEeCCCCceeccceeeeCce-eecCCccccCCCCCCccEEEEEEEEEeeCCCCCceEEEEEecC
Q 008741 444 VKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYF 522 (555)
Q Consensus 444 ~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~~-Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~ 522 (555)
+.|+++|.||+|||+||+.......||.+-|+||.. |||+.+...-. .+...|.|+||=.|+|. ..+|||+||+|+.
T Consensus 711 melwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~~-~p~liydlyavDNHygg-lsgGHYtAyarn~ 788 (823)
T COG5560 711 MELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVD-DPRLIYDLYAVDNHYGG-LSGGHYTAYARNF 788 (823)
T ss_pred hhhhcCChheeeehhhhhhcccchhhhhhhhccccccccccceEEeec-CcceEEEeeeccccccc-cCCcceeeeeecc
Confidence 999999999999999999987788999999999997 99998876553 33499999999999999 8999999999996
Q ss_pred -CCcEEEEeCCCceeeCcccccCCCcEEEEEEE
Q 008741 523 -NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 554 (555)
Q Consensus 523 -~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~R 554 (555)
+++||+|||++|+++.+++...+.||+|||+|
T Consensus 789 ~n~~wy~fdDsritevdped~vtssaYvLFyrr 821 (823)
T COG5560 789 ANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821 (823)
T ss_pred cCCceEEecCccccccCccccccceeEEEEEEe
Confidence 66899999999999999999999999999998
No 12
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.5e-53 Score=451.61 Aligned_cols=290 Identities=22% Similarity=0.332 Sum_probs=237.0
Q ss_pred CCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccC-CCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCC
Q 008741 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD-IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPF 278 (555)
Q Consensus 200 ~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~-~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v 278 (555)
+.+||.|+||||||||+||+|+++|+||++++...... ......++.++|..+++.+|.+.. ....+
T Consensus 118 G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~------------~~~~i 185 (440)
T cd02669 118 GFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRN------------FKGHV 185 (440)
T ss_pred CccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhcccc------------CCCcc
Confidence 56999999999999999999999999999998643211 112456889999999999986431 12679
Q ss_pred ChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcc
Q 008741 279 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSA 358 (555)
Q Consensus 279 ~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (555)
+|..|...++...+. .|.++.||||||||.+|||.||+++.+...
T Consensus 186 sP~~fl~~l~~~~~~----~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~------------------------------- 230 (440)
T cd02669 186 SPHELLQAVSKVSKK----KFSITEQSDPVEFLSWLLNTLHKDLGGSKK------------------------------- 230 (440)
T ss_pred CHHHHHHHHHhhccc----ccCCcccCCHHHHHHHHHHHHHHHhccCCC-------------------------------
Confidence 999999999876432 247889999999999999999999753210
Q ss_pred cccccccCCcccccccccEEeEEEEe-cCC---------------ccceeeecceeeeeeecccc------------ccC
Q 008741 359 VTRTQSFLPSALSDIFGGQLKSVVKA-QGN---------------KASATVQPFLLLHLDIYSEA------------VHT 410 (555)
Q Consensus 359 ~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~---------------~~s~~~e~f~~LsL~I~~~~------------~~s 410 (555)
...++|+++|+|++.+.++| .|. ..+.+.+||++|+|+||..+ ..+
T Consensus 231 ------~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~ 304 (440)
T cd02669 231 ------PNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVP 304 (440)
T ss_pred ------CCCCcceeccCceEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCccc
Confidence 02346999999999999987 332 35677899999999998642 257
Q ss_pred HHHHHHhhcCCcCCcccccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCce-eecCCccccC
Q 008741 411 IEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVT 489 (555)
Q Consensus 411 Le~~L~~~~~~E~l~g~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~~-Ldl~~~~~~~ 489 (555)
|+++|+.| .|..|. ....+.|+++|.+||+||+|||+||.++.....|+.+.|.||.. |||.+|+...
T Consensus 305 l~e~L~ky---------~~~~c~--~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~ 373 (440)
T cd02669 305 LKQLLKKY---------DGKTET--ELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFD 373 (440)
T ss_pred HHHHHHhc---------CCccce--ecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCcc
Confidence 88888764 455453 34477999999999999999999999987677899999999997 8999998643
Q ss_pred C--CCCCccEEEEEEEEEeeCCCCCceEEEEEecC-CCcEEEEeCCCceeeCcccccCCCcEEEEEE
Q 008741 490 P--SAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 553 (555)
Q Consensus 490 ~--~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~-~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~ 553 (555)
. ......|+|+|||+|.|..+++|||+||+|+. +++||+|||+.|+++++++|..++||||||+
T Consensus 374 ~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 374 KPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred ccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 2 24678999999999999944999999999974 7899999999999999999999999999996
No 13
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-52 Score=433.34 Aligned_cols=293 Identities=24% Similarity=0.381 Sum_probs=238.3
Q ss_pred CCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCCC
Q 008741 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 279 (555)
Q Consensus 200 ~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v~ 279 (555)
+.+||.|+||||||||+||+|+++|+|+++++............++.++|+.|+..++.... ..+.
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~~--------------~~~~ 66 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSES--------------PVKT 66 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCCc--------------cccC
Confidence 35899999999999999999999999999999763222233456789999999998875432 2233
Q ss_pred hHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCccc
Q 008741 280 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (555)
Q Consensus 280 p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (555)
|..+. .+..+ ....+..+.||||+|||.+||+.|++++....
T Consensus 67 ~~~~~-~~~~~----~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~--------------------------------- 108 (334)
T cd02659 67 TELTD-KTRSF----GWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTG--------------------------------- 108 (334)
T ss_pred cchhh-eeccC----CCCCCCcccchhHHHHHHHHHHHHHHHhccCc---------------------------------
Confidence 33222 22222 12234678999999999999999999874211
Q ss_pred ccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcc---cccCCCCCC
Q 008741 360 TRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNA 435 (555)
Q Consensus 360 ~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g---~~c~~c~~~ 435 (555)
..++|.++|+|++...++| .|+..+...++|+.|+|+++. ..+++++|+.|+.+|.+++ +.|+.|+.
T Consensus 109 ------~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~--~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~- 179 (334)
T cd02659 109 ------QEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKG--KKNLEESLDAYVQGETLEGDNKYFCEKCGK- 179 (334)
T ss_pred ------ccchhhhhCceEEEeEEEecCCCceecccccceEEEEEcCC--CCCHHHHHHHhcCeeEecCCccEecCcCCC-
Confidence 1235899999999999999 899999999999999999974 5789999999999999887 56766654
Q ss_pred cceeEEEEEEeccCCceEEEEEeeeEeC--CCCceeccceeeeCceeecCCccccCC----------CCCCccEEEEEEE
Q 008741 436 GVVTAKKSVKIQTLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLVTP----------SAEGRKYELVATV 503 (555)
Q Consensus 436 ~~~~a~k~~~i~~lP~vLiI~L~Rf~~~--~~~~~Ki~~~V~fp~~Ldl~~~~~~~~----------~~~~~~Y~L~gvI 503 (555)
.+.+.++..|.++|++|+|||+||.++ .....|++..|.||..|||.+++.... ......|+|+|||
T Consensus 180 -~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI 258 (334)
T cd02659 180 -KVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVL 258 (334)
T ss_pred -cccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCccccccccccccccccccCCCCeeEEEEEEE
Confidence 458899999999999999999999987 345789999999999999998876542 3457889999999
Q ss_pred EEeeCCCCCceEEEEEecC-CCcEEEEeCCCceeeCccccc----------------------CCCcEEEEEEEC
Q 008741 504 THHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVL----------------------HDQAYVLFYKQV 555 (555)
Q Consensus 504 ~H~G~s~~sGHYva~vr~~-~~~W~~fnDs~V~~vs~~~v~----------------------~~~aYlLfY~RV 555 (555)
+|.|+ .++|||+||+|.. +++||.|||+.|+++++++|+ ...||||||+|.
T Consensus 259 ~H~G~-~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~ 332 (334)
T cd02659 259 VHSGD-AHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERK 332 (334)
T ss_pred EecCC-CCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEe
Confidence 99997 8999999999985 789999999999999999885 237999999983
No 14
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-51 Score=390.40 Aligned_cols=328 Identities=28% Similarity=0.446 Sum_probs=241.0
Q ss_pred ccCCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhh-h----ccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcccccc
Q 008741 196 VKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQEL-R----TRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNIS 270 (555)
Q Consensus 196 ~~~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~-~----~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~ 270 (555)
.....|.||+|+|||||||++||||+.+..+...|+.. . ..+.+. +.+...+...+......+..
T Consensus 66 ~dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~pr-g~~g~~~~k~F~~l~~~~~~--------- 135 (415)
T COG5533 66 KDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPR-GKPGSNAFKQFIALYETPGC--------- 135 (415)
T ss_pred hcccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCC-CCcchhHHHHHHHHHhcccc---------
Confidence 34557899999999999999999999999999855432 1 112221 22222222222222222211
Q ss_pred ccCCCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCC---C----Cccccccch
Q 008741 271 VLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSIN---G----ANTALVSLA 343 (555)
Q Consensus 271 ~~~~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~---~----~~~~~~~~~ 343 (555)
.....++|..|...+..+++.| .+..|||+|||+.++||.||++++.-........ + .+.-.+.-.
T Consensus 136 --Hg~~sis~~nF~~i~~~~n~~f-----s~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~ 208 (415)
T COG5533 136 --HGPKSISPRNFIDILSGRNKLF-----SGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHF 208 (415)
T ss_pred --CCCcccchHHHHHHHccccccc-----cccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchh
Confidence 1226799999999999998887 7779999999999999999999875443321110 0 011112223
Q ss_pred hhhhhhhhCCCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCc
Q 008741 344 EEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPE 422 (555)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E 422 (555)
...+|+.+...++++ |.+.|.|+..+.++| .|+++++++.+|..|.+|++.-....|++||+.|.++|
T Consensus 209 S~~EWn~~L~sn~S~-----------v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e 277 (415)
T COG5533 209 SHHEWNLHLRSNKSL-----------VAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEE 277 (415)
T ss_pred hhhhhHHhhccchHH-----------HHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHH
Confidence 446888888877764 789999999999999 89999999999999999998666667999999999999
Q ss_pred CCcc---cccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceee----eCceeecCCccccCCCCCCc
Q 008741 423 NLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVR----FPLQLVLGRDLLVTPSAEGR 495 (555)
Q Consensus 423 ~l~g---~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~----fp~~Ldl~~~~~~~~~~~~~ 495 (555)
.++| |.|++|+. ++.++|++.|..+|++|||||+||...-....|++.+-- +|.+..+....-....-.+.
T Consensus 278 ~L~g~d~W~CpkC~~--k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~ 355 (415)
T COG5533 278 KLEGKDAWRCPKCGR--KESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPR 355 (415)
T ss_pred hhcCcccccCchhcc--cccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCcc
Confidence 9976 78888865 458999999999999999999999955444445544332 22222222221112224578
Q ss_pred cEEEEEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceeeCcc-cccCCCcEEEEEEEC
Q 008741 496 KYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTS-KVLHDQAYVLFYKQV 555 (555)
Q Consensus 496 ~Y~L~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~vs~~-~v~~~~aYlLfY~RV 555 (555)
+|.|+|||||.|+ ..+|||+++|+.+ +.|+.|||+.|++++-. +.....+|||||+|+
T Consensus 356 ~Y~L~gv~Ch~G~-L~gGHY~s~v~~~-~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 356 KYSLLGVVCHNGT-LNGGHYFSEVKRS-GTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred ceeEEEEEeecce-ecCceeEEeeeec-CceEEechhheeeccceecccCCcceEEEEEec
Confidence 9999999999999 9999999999994 66999999999999754 344458999999995
No 15
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-50 Score=400.45 Aligned_cols=212 Identities=33% Similarity=0.531 Sum_probs=193.2
Q ss_pred ccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCCChHH
Q 008741 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 282 (555)
Q Consensus 203 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v~p~~ 282 (555)
||+|+||||||||+||+|+++|+||+++.+..
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999887411
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcccccc
Q 008741 283 FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 362 (555)
Q Consensus 283 ~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (555)
.||||||||..||+.|+..
T Consensus 33 --------------------~QqDa~EFl~~ll~~l~~~----------------------------------------- 51 (240)
T cd02662 33 --------------------EQQDAHELFQVLLETLEQL----------------------------------------- 51 (240)
T ss_pred --------------------hhcCHHHHHHHHHHHHHHh-----------------------------------------
Confidence 6999999999999999932
Q ss_pred cccCCcccccccccEEeEEEEe-cCCccce-eeecceeeeeeecccc---ccCHHHHHHhhcCCcCCcccccCCCCCCcc
Q 008741 363 QSFLPSALSDIFGGQLKSVVKA-QGNKASA-TVQPFLLLHLDIYSEA---VHTIEDALRLFSAPENLEGYRTSSTGNAGV 437 (555)
Q Consensus 363 ~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~-~~e~f~~LsL~I~~~~---~~sLe~~L~~~~~~E~l~g~~c~~c~~~~~ 437 (555)
+.++|.|++.+.++| .|++.+. +.|+|++|+|+||... ..+|+++|+.|+.+|.++++.|+.|
T Consensus 52 -------i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~~L~~~~~~E~l~~~~C~~C----- 119 (240)
T cd02662 52 -------LKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDDYKCDRC----- 119 (240)
T ss_pred -------ccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCCCCCCCHHHHHHHhcCcccccCcCCCCC-----
Confidence 678999999999999 7887765 4899999999999654 5799999999999999999999988
Q ss_pred eeEEEEEEeccCCceEEEEEeeeEeCC-CCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEeeCCCCCceEE
Q 008741 438 VTAKKSVKIQTLSKILILHLMRFSYGS-QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYT 516 (555)
Q Consensus 438 ~~a~k~~~i~~lP~vLiI~L~Rf~~~~-~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sGHYv 516 (555)
+..|.++|++|+|||+||.++. ....|++.+|.||..| ....|+|+|||+|.|. .++|||+
T Consensus 120 -----~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l------------~~~~Y~L~avi~H~G~-~~~GHY~ 181 (240)
T cd02662 120 -----QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL------------PKVLYRLRAVVVHYGS-HSSGHYV 181 (240)
T ss_pred -----eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc------------CCceEEEEEEEEEecc-CCCceEE
Confidence 4789999999999999999996 6788999999999998 3679999999999999 5999999
Q ss_pred EEEecC---------------------CCcEEEEeCCCceeeCcccc-cCCCcEEEEEE
Q 008741 517 ADARYF---------------------NDQWLHFDDASVTAIGTSKV-LHDQAYVLFYK 553 (555)
Q Consensus 517 a~vr~~---------------------~~~W~~fnDs~V~~vs~~~v-~~~~aYlLfY~ 553 (555)
||+|.+ .++||+|||+.|++++.++| ...+||||||+
T Consensus 182 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 182 CYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred EEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence 999985 37899999999999999999 88899999996
No 16
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-49 Score=413.46 Aligned_cols=295 Identities=27% Similarity=0.407 Sum_probs=256.8
Q ss_pred cccCCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCC
Q 008741 195 SVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDI 274 (555)
Q Consensus 195 ~~~~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~ 274 (555)
+.+.++.+||+|.|.||||||+||+||.+..||+.++.++. +.+....+++.+|+.++..|+...
T Consensus 187 SKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipT-d~p~grdSValaLQr~Fynlq~~~-------------- 251 (1089)
T COG5077 187 SKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPT-DHPRGRDSVALALQRLFYNLQTGE-------------- 251 (1089)
T ss_pred cccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCC-CCCCccchHHHHHHHHHHHHhccC--------------
Confidence 45667889999999999999999999999999999998875 345566778899999999998654
Q ss_pred CCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCC
Q 008741 275 GRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPK 354 (555)
Q Consensus 275 ~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (555)
.+++...|.... .+..+....|||.|||.+.|+|.|+..+.+..
T Consensus 252 -~PvdTteltrsf-------gWds~dsf~QHDiqEfnrVl~DnLEksmrgt~---------------------------- 295 (1089)
T COG5077 252 -EPVDTTELTRSF-------GWDSDDSFMQHDIQEFNRVLQDNLEKSMRGTV---------------------------- 295 (1089)
T ss_pred -CCcchHHhhhhc-------CcccchHHHHHhHHHHHHHHHHHHHHhhcCCh----------------------------
Confidence 567777665432 22334567999999999999999998663322
Q ss_pred CCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcccccCCCC
Q 008741 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTG 433 (555)
Q Consensus 355 ~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c~~c~ 433 (555)
+.+-++.+|.|.+.+.++| .-.+.+.+.|.||++.|++ ++..+||++++.|...|+++|.+|+.|.
T Consensus 296 -----------VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNv--K~~knLqeSfr~yIqvE~l~GdN~Y~ae 362 (1089)
T COG5077 296 -----------VENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNV--KGMKNLQESFRRYIQVETLDGDNRYNAE 362 (1089)
T ss_pred -----------hhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcc--cchhhHHHHHHHhhhheeccCCcccccc
Confidence 2334889999999999999 7888899999999999998 5788999999999999999999999999
Q ss_pred CCcceeEEEEEEeccCCceEEEEEeeeEeC--CCCceeccceeeeCceeecCCccccCCC---CCCccEEEEEEEEEeeC
Q 008741 434 NAGVVTAKKSVKIQTLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLVTPS---AEGRKYELVATVTHHGR 508 (555)
Q Consensus 434 ~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~--~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~---~~~~~Y~L~gvI~H~G~ 508 (555)
..+.+.|.|.+-|.+|||||.+||+||.|+ .+.+.||+++.+||+++||.+|+..... ...+.|.|+||++|.|+
T Consensus 363 ~~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsGD 442 (1089)
T COG5077 363 KHGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGD 442 (1089)
T ss_pred cccchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhhcccCcEEEEEEEEEeccc
Confidence 999999999999999999999999999999 5668999999999999999999866433 34589999999999999
Q ss_pred CCCCceEEEEEecC-CCcEEEEeCCCceeeCcccccC----------------------CCcEEEEEEE
Q 008741 509 DPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLH----------------------DQAYVLFYKQ 554 (555)
Q Consensus 509 s~~sGHYva~vr~~-~~~W~~fnDs~V~~vs~~~v~~----------------------~~aYlLfY~R 554 (555)
.+.|||+|++|.. +|+||+|||.+|++++..+|+. -.||||+|-|
T Consensus 443 -l~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlR 510 (1089)
T COG5077 443 -LHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLR 510 (1089)
T ss_pred -cCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeeh
Confidence 9999999999975 8999999999999999999863 1789999976
No 17
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.7e-46 Score=364.26 Aligned_cols=200 Identities=41% Similarity=0.644 Sum_probs=179.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcccccccccCCcccccccccEEeEEE
Q 008741 303 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382 (555)
Q Consensus 303 ~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i 382 (555)
.||||+||+.+||+.|+. +|.++|+|++.+.+
T Consensus 21 ~QqDa~Ef~~~ll~~l~~------------------------------------------------~i~~~F~~~~~~~~ 52 (230)
T cd02674 21 DQQDAQEFLLFLLDGLHS------------------------------------------------IIVDLFQGQLKSRL 52 (230)
T ss_pred hhhhHHHHHHHHHHHHhh------------------------------------------------hHHheeCCEEeCcE
Confidence 589999999999999981 27899999999999
Q ss_pred Ee-cCCccceeeecceeeeeeecccc----ccCHHHHHHhhcCCcCCcc---cccCCCCCCcceeEEEEEEeccCCceEE
Q 008741 383 KA-QGNKASATVQPFLLLHLDIYSEA----VHTIEDALRLFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILI 454 (555)
Q Consensus 383 ~C-~c~~~s~~~e~f~~LsL~I~~~~----~~sLe~~L~~~~~~E~l~g---~~c~~c~~~~~~~a~k~~~i~~lP~vLi 454 (555)
+| .|++.+.+.++|+.|+|++|... ..+|+++|+.++.++.+++ +.|+.|+ ..+.+.++..|.++|++|+
T Consensus 53 ~C~~C~~~~~~~e~~~~l~l~ip~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~--~~~~~~~~~~i~~lP~iLi 130 (230)
T cd02674 53 TCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCK--KKRKATKKLTISRLPKVLI 130 (230)
T ss_pred EcCCCcCCcceecceeEEEEecccccCCCCCCCHHHHHHHhcCccccCCCCceeCCCCC--CccceEEEEEEecCChhhE
Confidence 99 89999999999999999999654 5799999999999999877 4566664 4568899999999999999
Q ss_pred EEEeeeEeCCCCceeccceeeeCc-eeecCCccccCCCCCCccEEEEEEEEEeeCCCCCceEEEEEecCC-CcEEEEeCC
Q 008741 455 LHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFN-DQWLHFDDA 532 (555)
Q Consensus 455 I~L~Rf~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~~-~~W~~fnDs 532 (555)
|||+||.++.....|+..+|.||. .||+.+++.........+|+|+|||+|.|.. ++|||+||+|..+ ++|++|||+
T Consensus 131 i~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~-~~GHY~~~~~~~~~~~W~~fnD~ 209 (230)
T cd02674 131 IHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSL-NGGHYTAYCKNNETNDWYKFDDS 209 (230)
T ss_pred eEhhheecCCCCcccCCceEeccccccccccccCcccCCCCceEEEEEEEEeeCCC-CCcEEEEEEECCCCCceEEEcCC
Confidence 999999999877899999999996 5899888655556778999999999999995 9999999999974 899999999
Q ss_pred CceeeCcccccCCCcEEEEEE
Q 008741 533 SVTAIGTSKVLHDQAYVLFYK 553 (555)
Q Consensus 533 ~V~~vs~~~v~~~~aYlLfY~ 553 (555)
.|++++.+++...+||||||+
T Consensus 210 ~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 210 RVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred eEEEcCHHHccCCCceEEEeC
Confidence 999999999988899999996
No 18
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-46 Score=402.61 Aligned_cols=328 Identities=31% Similarity=0.441 Sum_probs=257.8
Q ss_pred cccCCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhh-hcc----CCCCCCCcHHHHHHHHHHHhcCCCCCCCccccc
Q 008741 195 SVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQEL-RTR----DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNI 269 (555)
Q Consensus 195 ~~~~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~-~~~----~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~ 269 (555)
......++||.|+|||||||++||||+.|+.||..++.. ... +......++..+...++..++...
T Consensus 295 ~~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~--------- 365 (653)
T KOG1868|consen 295 STDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGH--------- 365 (653)
T ss_pred cccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCC---------
Confidence 334457799999999999999999999999999554433 111 233344567777777777766443
Q ss_pred cccCCCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCC---C----Cccccccc
Q 008741 270 SVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSIN---G----ANTALVSL 342 (555)
Q Consensus 270 ~~~~~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~---~----~~~~~~~~ 342 (555)
....+.|..|...+.++.+.| .+..|||||||+.++++.||++++.......... + ........
T Consensus 366 ----~~~s~~P~~f~~~~~~y~~~~-----~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~ 436 (653)
T KOG1868|consen 366 ----GQFSVLPRRFIRVLKRYSPNF-----SGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSK 436 (653)
T ss_pred ----CceecCcHHHHHHHhhccccc-----ccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccc
Confidence 236789999999999999987 6678999999999999999999976543211111 1 11111222
Q ss_pred hhhhhhhhhCCCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccc----cCHHHHHHh
Q 008741 343 AEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAV----HTIEDALRL 417 (555)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~----~sLe~~L~~ 417 (555)
.+...|........+ .|.++|.||+.+.++| .|++.+.++++|++++|+||..+. .+|++|++.
T Consensus 437 ~s~~~w~~~~~~~d~-----------~i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ 505 (653)
T KOG1868|consen 437 KSLAEWLRYLEEEDS-----------KIGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSL 505 (653)
T ss_pred hhHHHHHhhccccch-----------HHHHHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhcc
Confidence 334467666553332 3889999999999999 899999999999999999996543 469999999
Q ss_pred hcCCcCCcc---cccCCCCCCcceeE--EEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCce-eecCCccccCCC
Q 008741 418 FSAPENLEG---YRTSSTGNAGVVTA--KKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPS 491 (555)
Q Consensus 418 ~~~~E~l~g---~~c~~c~~~~~~~a--~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~~-Ldl~~~~~~~~~ 491 (555)
|+..|.+++ |.|+.|.... .. .|+..|++||++|+|||+||.++.....|...-|+||.. .++.++.. ...
T Consensus 506 ft~~ekle~~~~w~Cp~c~~~~--~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~-~~~ 582 (653)
T KOG1868|consen 506 FTKEEKLEGDEAWLCPRCKHKE--SSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFA-EKG 582 (653)
T ss_pred ccchhhcccccccCCccccCcc--cccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhcc-ccC
Confidence 999999999 7777775433 44 389999999999999999999997778899999999996 66665433 333
Q ss_pred CCCccEEEEEEEEEeeCCCCCceEEEEEecC-CCcEEEEeCCCceeeCcccccCCCcEEEEEEEC
Q 008741 492 AEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 555 (555)
Q Consensus 492 ~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~-~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~RV 555 (555)
.....|+|+|||+|.|+ ..+|||+|||+.. .+.|+.|||+.|+.++..++..+.||||||+|+
T Consensus 583 ~~~~~Y~L~aVv~H~Gt-l~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~ 646 (653)
T KOG1868|consen 583 NNPKSYRLYAVVNHSGT-LNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERL 646 (653)
T ss_pred CCccceeeEEEEeccCc-ccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecC
Confidence 44555999999999995 9999999999875 677999999999999998998899999999985
No 19
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-44 Score=375.29 Aligned_cols=304 Identities=23% Similarity=0.363 Sum_probs=245.7
Q ss_pred ccCCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCC---CCCCCcHHHHHHHHHHHhcCCCCCCCcccccccc
Q 008741 196 VKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDI---PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272 (555)
Q Consensus 196 ~~~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~---~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~ 272 (555)
.-..+.+||+|+||+||||||||+|+.+|.|...+........ .....++-|++.+|+..|.....+.. ....
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p----~~~~ 377 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKP----LMDP 377 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCc----cCCc
Confidence 3344569999999999999999999999999988776521111 12334567888888888765443322 1112
Q ss_pred CCCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhC
Q 008741 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVG 352 (555)
Q Consensus 273 ~~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (555)
..+..|+|.+|...+++-+|.| +..+||||+|||.+||+.|++.....
T Consensus 378 ~~qngIsP~mFK~~igknHpeF-----st~~QQDA~EFllfLl~ki~~n~rs~--------------------------- 425 (763)
T KOG0944|consen 378 SNQNGISPLMFKALIGKNHPEF-----STNRQQDAQEFLLFLLEKIRENSRSS--------------------------- 425 (763)
T ss_pred cccCCcCHHHHHHHHcCCCccc-----cchhhhhHHHHHHHHHHHHhhccccc---------------------------
Confidence 2257899999999999999998 88899999999999999998753111
Q ss_pred CCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeecc----ccccCHHHHHHhhcCCcCCccc
Q 008741 353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYS----EAVHTIEDALRLFSAPENLEGY 427 (555)
Q Consensus 353 ~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~----~~~~sLe~~L~~~~~~E~l~g~ 427 (555)
+ ..+.++|...+...+.| .|.++..+.++-+.|.||||. ...+++.+||+.||.+ .++++
T Consensus 426 -------------~-~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~df 490 (763)
T KOG0944|consen 426 -------------L-PNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDDF 490 (763)
T ss_pred -------------C-CCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCC-cchhh
Confidence 0 12779999999999999 799999999999999999974 2356999999999999 66668
Q ss_pred ccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCceeecCCccccC------------------
Q 008741 428 RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVT------------------ 489 (555)
Q Consensus 428 ~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~------------------ 489 (555)
.|..|+. +..|.++..|.+||+||+||+.||.+..+..+|+...|++|+.||++.|....
T Consensus 491 ~s~ac~~--K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~ 568 (763)
T KOG0944|consen 491 WSTACGE--KKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEF 568 (763)
T ss_pred hhHhhcC--ccccccccccccCCceEEEEeeEEEecCceeeeeccceecchhhchhhhhhcCCCCcccccCCcCcccCcc
Confidence 8887854 55899999999999999999999999888889999999999999996654110
Q ss_pred --------------------------------------------------------------------------------
Q 008741 490 -------------------------------------------------------------------------------- 489 (555)
Q Consensus 490 -------------------------------------------------------------------------------- 489 (555)
T Consensus 569 ~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~ 648 (763)
T KOG0944|consen 569 AADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFS 648 (763)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCc
Confidence
Q ss_pred ---------------------------------------------------CCCCCccEEEEEEEEEeeCCCCCceEEEE
Q 008741 490 ---------------------------------------------------PSAEGRKYELVATVTHHGRDPSKGHYTAD 518 (555)
Q Consensus 490 ---------------------------------------------------~~~~~~~Y~L~gvI~H~G~s~~sGHYva~ 518 (555)
..+.+.+|.|+|+|+|.|+++++|||||+
T Consensus 649 ~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sGHYV~h 728 (763)
T KOG0944|consen 649 RNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHMGTSAHSGHYVCH 728 (763)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecCCCCCCCcceEEE
Confidence 01357899999999999999999999999
Q ss_pred EecCCCcEEEEeCCCceeeCcccccCCCcEEEEEEEC
Q 008741 519 ARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 555 (555)
Q Consensus 519 vr~~~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~RV 555 (555)
+|. .|+|+.|||+.|- .+ ++--++.+||+||+|+
T Consensus 729 irK-egkWVlfNDeKv~-~S-~~ppK~lgYvY~y~R~ 762 (763)
T KOG0944|consen 729 IRK-EGKWVLFNDEKVA-AS-QEPPKDLGYVYLYTRI 762 (763)
T ss_pred Eee-cCcEEEEcchhhh-hc-cCChhhcceEEEEEec
Confidence 999 5889999999997 23 3344678999999997
No 20
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-44 Score=349.07 Aligned_cols=199 Identities=22% Similarity=0.347 Sum_probs=165.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcccccccccCCcccccccccEEeEEE
Q 008741 303 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382 (555)
Q Consensus 303 ~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i 382 (555)
.|||||||+..|||.|++++........ ......++|.++|.|++.+.+
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~~~-------------------------------~~~~~~~~i~~lF~G~~~~~~ 69 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEAIS-------------------------------PGEKSKNPMVQLFYGTFLTEG 69 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc-------------------------------ccccccchHhhceEEEEEEEE
Confidence 4899999999999999999854221000 000133569999999999877
Q ss_pred EecCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcccccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEe
Q 008741 383 KAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY 462 (555)
Q Consensus 383 ~C~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~ 462 (555)
.| |+..+.+.|+|++|+|+|. +..+|++||+.++.++.+++..|..+ ..+.++..|.++|+||+|||+||.+
T Consensus 70 ~~-~~~~s~~~E~F~~L~l~i~--~~~~L~e~L~~~~~ee~l~~~~~~~~-----~~~~~~~~i~~lP~vL~i~LkRF~~ 141 (228)
T cd02665 70 VL-EGKPFCNCETFGQYPLQVN--GYGNLHECLEAAMFEGEVELLPSDHS-----VKSGQERWFTELPPVLTFELSRFEF 141 (228)
T ss_pred EE-CCCcccccCccEEEEEEEC--CCCCHHHHHHHhhhhcccccccccch-----hhhhhhhhhhhCChhhEEEeEeeEE
Confidence 66 4556889999999999995 45799999999999999987655432 2456667899999999999999999
Q ss_pred CCCCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEeeCCCCCceEEEEEecC-CCcEEEEeCCCceeeCccc
Q 008741 463 GSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSK 541 (555)
Q Consensus 463 ~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~-~~~W~~fnDs~V~~vs~~~ 541 (555)
+.....|+.++|+||.+| ....|+|+|||+|.|. +++|||+||+|.. +++||+|||+.|++++.++
T Consensus 142 ~~~~~~Ki~~~v~FP~~l------------~~~~Y~L~aVi~H~G~-~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~ 208 (228)
T cd02665 142 NQGRPEKIHDKLEFPQII------------QQVPYELHAVLVHEGQ-ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEE 208 (228)
T ss_pred cCCccEECCEEEEeeCcc------------CCceeEEEEEEEecCC-CCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHH
Confidence 977789999999999987 2458999999999999 8999999999874 7899999999999999998
Q ss_pred ccC--------CCcEEEEEE
Q 008741 542 VLH--------DQAYVLFYK 553 (555)
Q Consensus 542 v~~--------~~aYlLfY~ 553 (555)
|.. ..||||||.
T Consensus 209 v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 209 VERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred HhhhccCCCCCCceEEEEEC
Confidence 863 489999994
No 21
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.7e-45 Score=374.46 Aligned_cols=276 Identities=21% Similarity=0.311 Sum_probs=212.8
Q ss_pred CcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCC------------C-C--------CCCcHHHHHHHHHHHhcCC
Q 008741 201 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDI------------P-K--------AGYPTLTAFVGFVSDFDTP 259 (555)
Q Consensus 201 ~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~------------~-~--------~~~~~~~~l~~Ll~~l~~~ 259 (555)
|+||.|+||||||||+||+|+++|+||++++....... . . ...+++.+|+.|+..|+..
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999987642100 0 0 0125789999999999743
Q ss_pred CCCCCccccccccCCCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCcccc
Q 008741 260 SGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTAL 339 (555)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~ 339 (555)
. ...+.|..+...+.. .||||+||+..||+.|+.++......... ...
T Consensus 81 ~--------------~~~v~P~~~l~~l~~-------------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~-----~~~ 128 (343)
T cd02666 81 N--------------TRSVTPSKELAYLAL-------------RQQDVTECIDNVLFQLEVALEPISNAFAG-----PDT 128 (343)
T ss_pred C--------------CCccCcHHHHHhccc-------------cccchHHHHHHHHHHHHHHhcCccccccC-----ccc
Confidence 3 267999988875431 89999999999999999998643221100 000
Q ss_pred ccchhhhhhhhhCCCCCcccccccccCCcccccccccEEeEEEEe-cCC---ccceeeecceeeeeeecc--------cc
Q 008741 340 VSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGN---KASATVQPFLLLHLDIYS--------EA 407 (555)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~---~~s~~~e~f~~LsL~I~~--------~~ 407 (555)
. ......++|.++|.|++.+.++| .|+ ..+.+.|+|++|+|+|.. .+
T Consensus 129 ----------~-----------~~~~~~~~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~ 187 (343)
T cd02666 129 ----------E-----------DDKEQSDLIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLE 187 (343)
T ss_pred ----------c-----------cccchhhhhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcccccccccCC
Confidence 0 00012356999999999999998 454 789999999999999974 14
Q ss_pred ccCHHHHHHhhcCCcCCcccccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCceeecCCccc
Q 008741 408 VHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLL 487 (555)
Q Consensus 408 ~~sLe~~L~~~~~~E~l~g~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~~Ldl~~~~~ 487 (555)
..+|+++|+.|+..|. |.++|++|.|||+ +.+......+..++.++|...+..+++.
T Consensus 188 ~~~L~d~L~~~~~~e~----------------------~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~ 244 (343)
T cd02666 188 PKDLYDALDRYFDYDS----------------------LTKLPQRSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELI 244 (343)
T ss_pred CCCHHHHHHHhcChhh----------------------hccCCHHHHHHHh-hcccccchheeeccccccchHHHHHHHH
Confidence 6799999999997776 8899999999998 4443444566777777777655554432
Q ss_pred cC---------------------------CCCCCccEEEEEEEEEeeCCCCCceEEEEEecC-CCcEEEEeCCCceeeCc
Q 008741 488 VT---------------------------PSAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGT 539 (555)
Q Consensus 488 ~~---------------------------~~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~-~~~W~~fnDs~V~~vs~ 539 (555)
.. .......|+|+|||+|.|. .++|||++|+|+. ++.||+|||..|++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~ 323 (343)
T cd02666 245 REAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFIHRGE-ASSGHYWVYIKDFEENVWRKYNDETVTVVPA 323 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEEeecC-CCCCeEEEEEEECCCCeEEEEECCeeEEecH
Confidence 21 1136889999999999999 6999999999985 57899999999999999
Q ss_pred ccccC------CCcEEEEEE
Q 008741 540 SKVLH------DQAYVLFYK 553 (555)
Q Consensus 540 ~~v~~------~~aYlLfY~ 553 (555)
++++. .+||||+|.
T Consensus 324 ~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 324 SEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred HHHhhcccCCCCCCEEEEeC
Confidence 88875 499999994
No 22
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.5e-43 Score=352.94 Aligned_cols=253 Identities=34% Similarity=0.562 Sum_probs=200.2
Q ss_pred CcccccCCCchhHHHHHHHHhCChHHHHHHHhh------hccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCC
Q 008741 201 PRGLINSGNLCFLNATLQALMSCSPFVQLLQEL------RTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDI 274 (555)
Q Consensus 201 ~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~------~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~ 274 (555)
|+||.|.||||||||+||+|+++|+|+++|... ..........++.+.++.|+..++... ..
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~------------~~ 68 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSN------------SS 68 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSC------------SS
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhc------------cc
Confidence 689999999999999999999999999999975 222223344579999999999998651 12
Q ss_pred CCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCC
Q 008741 275 GRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPK 354 (555)
Q Consensus 275 ~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (555)
...+.|..+...++...+.| ..+.||||+|||..||+.|++++..... ...|....
T Consensus 69 ~~~i~~~~~~~~l~~~~~~~-----~~~~qqDa~E~l~~ll~~l~~~~~~~~~-----------------~~~~~~~~-- 124 (269)
T PF00443_consen 69 DSSISPSDFINALSSINPSF-----SNGEQQDAHEFLSFLLDWLDEEFNSSFK-----------------RKSWKNTN-- 124 (269)
T ss_dssp SSEEHCHHHHHHHHHHCGGG-----GSSSTEEHHHHHHHHHHHHHHHHTSCSS-----------------HHHHHHHH--
T ss_pred ccceeecccccccccccccc-----ccccccchhhhhcccccccchhhccccc-----------------cccccccc--
Confidence 37799999999999988875 6789999999999999999999754221 01111111
Q ss_pred CCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcccccCCCC
Q 008741 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTG 433 (555)
Q Consensus 355 ~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c~~c~ 433 (555)
....+++.++|.+++...+.| .|+..
T Consensus 125 ---------~~~~~~~~~~f~~~~~~~~~c~~c~~~-------------------------------------------- 151 (269)
T PF00443_consen 125 ---------SSEDSLISDLFGGQFESSIKCSSCKNS-------------------------------------------- 151 (269)
T ss_dssp ---------CCEESHHHHHH-EEEEEEEEETTTTCE--------------------------------------------
T ss_pred ---------ccccccccccccccccccccccccccc--------------------------------------------
Confidence 112346899999999999999 67764
Q ss_pred CCcceeEEEEEEeccCCceEEEEEeeeEeCCC--CceeccceeeeC-ceeecCCccccCCC--CCCccEEEEEEEEEeeC
Q 008741 434 NAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFP-LQLVLGRDLLVTPS--AEGRKYELVATVTHHGR 508 (555)
Q Consensus 434 ~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~--~~~Ki~~~V~fp-~~Ldl~~~~~~~~~--~~~~~Y~L~gvI~H~G~ 508 (555)
...|.++|++|+|+|+||.++.. ...|+..+|.|| ..|||.+++..... .....|+|+|||+|+|
T Consensus 152 ---------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G- 221 (269)
T PF00443_consen 152 ---------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG- 221 (269)
T ss_dssp ---------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES-
T ss_pred ---------ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhcccc-
Confidence 46799999999999999987743 478999999999 69999988765432 2478999999999999
Q ss_pred CCCCceEEEEEecCC-CcEEEEeCCCceeeCcccccC---CCcEEEEE
Q 008741 509 DPSKGHYTADARYFN-DQWLHFDDASVTAIGTSKVLH---DQAYVLFY 552 (555)
Q Consensus 509 s~~sGHYva~vr~~~-~~W~~fnDs~V~~vs~~~v~~---~~aYlLfY 552 (555)
+.++|||+||||+.+ ++|++|||+.|+++++++|.. .+||||||
T Consensus 222 ~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 222 SADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp STTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred ccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 599999999999864 469999999999999999988 89999999
No 23
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-43 Score=349.87 Aligned_cols=211 Identities=20% Similarity=0.273 Sum_probs=164.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcccccccccCCcccccccccEEe
Q 008741 300 GRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLK 379 (555)
Q Consensus 300 ~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~ 379 (555)
.+++||||||||++|||.|++++.......... .... ......++|.|++.
T Consensus 29 ~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~----------------------~~~~-------~~~~~~~~F~~~l~ 79 (245)
T cd02673 29 DNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPS----------------------NIEI-------KRLNPLEAFKYTIE 79 (245)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhcccCCCC----------------------cccc-------cccCHhHheeeEEE
Confidence 778999999999999999999875432111000 0000 00013478999999
Q ss_pred EEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcccccCCCCCCcceeEEEEEEeccCCceEEEEEe
Q 008741 380 SVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLM 458 (555)
Q Consensus 380 s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~ 458 (555)
+.++| .|++.+.+.++|++|+|+++......+++++..+...+.++ +.|+.|++. .+.++.+|.++|+||+|||+
T Consensus 80 s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~~le~l~~~~~~~~~~e-~~C~~C~~~---~a~k~~~i~~~P~vL~i~lk 155 (245)
T cd02673 80 SSYVCIGCSFEENVSDVGNFLDVSMIDNKLDIDELLISNFKTWSPIE-KDCSSCKCE---SAISSERIMTFPECLSINLK 155 (245)
T ss_pred eEEEecCCCCeeeeccccceeccccccCCcchHHHHHHHhhcccccC-ccCCCCCCc---cceeechhhhCChhhEEeeE
Confidence 99999 89999999999999999998654567889998888877776 789988652 67788889999999999999
Q ss_pred eeEeCCCCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEeeCCCCCceEEEEEecC--CCcEEEEeCCCcee
Q 008741 459 RFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYF--NDQWLHFDDASVTA 536 (555)
Q Consensus 459 Rf~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~--~~~W~~fnDs~V~~ 536 (555)
||.+.. +....+.+ ..+++.++.. ....|+|+|||+|.|.+.++|||+||+|.. +++||.|||+.|++
T Consensus 156 Rf~~~~----~~~~~~~~-~~~~~~~~~~-----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~ 225 (245)
T cd02673 156 RYKLRI----ATSDYLKK-NEEIMKKYCG-----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRP 225 (245)
T ss_pred eeeecc----cccccccc-cccccccccC-----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeE
Confidence 998753 11212221 1345555542 457899999999999878999999999985 57899999999999
Q ss_pred eCccccc---CCCcEEEEEE
Q 008741 537 IGTSKVL---HDQAYVLFYK 553 (555)
Q Consensus 537 vs~~~v~---~~~aYlLfY~ 553 (555)
+++++|+ .+.||||||+
T Consensus 226 v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 226 VSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred cCHHHHhhccCCceEEEEEC
Confidence 9999998 5799999996
No 24
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-45 Score=384.56 Aligned_cols=349 Identities=24% Similarity=0.317 Sum_probs=257.7
Q ss_pred cccccCCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhcc-CCCCCCCcHHHHHHHHHHHhcCCCCCCCccc--cc
Q 008741 193 VKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKK--NI 269 (555)
Q Consensus 193 ~~~~~~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~-~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~--~~ 269 (555)
......+.++||.|+|||||||||||+|+++|.||+.|...... ...+...+....+..|+..+..+.+...+.- ..
T Consensus 197 ie~~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e 276 (877)
T KOG1873|consen 197 IEKRRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLE 276 (877)
T ss_pred ccccccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhh
Confidence 34555667899999999999999999999999999999876432 2233445555566666666655544322210 11
Q ss_pred cccCCCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCc-cCCCCccccccchhhhhh
Q 008741 270 SVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGEST-SINGANTALVSLAEEDEW 348 (555)
Q Consensus 270 ~~~~~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~-~~~~~~~~~~~~~~~~~~ 348 (555)
........++|..|...++..+|.| .++.||||||+|+.|||.|..|-.+...... ...+.+..-+...-+..
T Consensus 277 ~~e~~ksv~~Pr~lF~~~C~k~pqF-----~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~- 350 (877)
T KOG1873|consen 277 MSETTKSVITPRTLFGQFCSKAPQF-----RGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECG- 350 (877)
T ss_pred hhhccCCccCHHHHHHHHHHhCCcc-----cccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhcc-
Confidence 1223458899999999999999998 8999999999999999999877433332210 01111111111111111
Q ss_pred hhhCCCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeecc----------------------
Q 008741 349 ETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYS---------------------- 405 (555)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~---------------------- 405 (555)
. ++.+-.....+..++..+|.|.+.+.++| .|+ ++...+.|.+.++||.+
T Consensus 351 q------~sKvYe~f~~~~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd 423 (877)
T KOG1873|consen 351 Q------KSKVYEPFKDLSLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSD 423 (877)
T ss_pred c------hhhcccccccCCcccccccCCCcccchhhhccc-eeccchhhcccccccccCccccccCCCcccceecccccc
Confidence 1 11111122335567789999999999999 455 79999999999999832
Q ss_pred --------------------------------------------------------------------------------
Q 008741 406 -------------------------------------------------------------------------------- 405 (555)
Q Consensus 406 -------------------------------------------------------------------------------- 405 (555)
T Consensus 424 ~spst~~~t~n~~~~e~~~~~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p 503 (877)
T KOG1873|consen 424 TSPSTEAPTKNLPSSELLDSLTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILP 503 (877)
T ss_pred CCccccCcccCcccccccccccccCchhhccccccccCccccccchhhhhhhhhccccccccccchhhhhhchhhccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 008741 406 -------------------------------------------------------------------------------- 405 (555)
Q Consensus 406 -------------------------------------------------------------------------------- 405 (555)
T Consensus 504 ~gD~e~s~Ad~~lde~n~~~~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~ 583 (877)
T KOG1873|consen 504 LGDGELSKADMSLDEANMDEFSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSR 583 (877)
T ss_pred cCcccccccccccccccccccccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 008741 406 -------------------------------------------------------------------------------- 405 (555)
Q Consensus 406 -------------------------------------------------------------------------------- 405 (555)
T Consensus 584 ~s~sp~~se~~~vs~n~~~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~ 663 (877)
T KOG1873|consen 584 FSRSPKKSEVKIVSGNDKTVGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFS 663 (877)
T ss_pred hcCCCcccceeeeccccccccccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCccccc
Confidence
Q ss_pred -----------ccccCHHHHHHhhcCCcCCcccc---cCCCCCC-cc--e----------------------eEEEEEEe
Q 008741 406 -----------EAVHTIEDALRLFSAPENLEGYR---TSSTGNA-GV--V----------------------TAKKSVKI 446 (555)
Q Consensus 406 -----------~~~~sLe~~L~~~~~~E~l~g~~---c~~c~~~-~~--~----------------------~a~k~~~i 446 (555)
+...+++.||.+|++.|.+.|.+ |+.|... .. + .|.+.+.|
T Consensus 664 S~s~~~~~~~~D~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li 743 (877)
T KOG1873|consen 664 SISDPEVLDSSDEPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLI 743 (877)
T ss_pred cccChhhccCCCCCccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeec
Confidence 12568999999999999999854 5544320 00 0 15788889
Q ss_pred ccCCceEEEEEeeeEeC-CCCceeccceeeeCceeecCCccccCC----CCCCccEEEEEEEEEeeCCCCCceEEEEEec
Q 008741 447 QTLSKILILHLMRFSYG-SQGSTKLHKSVRFPLQLVLGRDLLVTP----SAEGRKYELVATVTHHGRDPSKGHYTADARY 521 (555)
Q Consensus 447 ~~lP~vLiI~L~Rf~~~-~~~~~Ki~~~V~fp~~Ldl~~~~~~~~----~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~ 521 (555)
..+||||+|||+||..+ ..+..|.+..+.|++.+||.+|+...- ......|+|.|+|.|.|+ ...||||||+|.
T Consensus 744 ~~aPpVltihlKrf~q~~~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgt-m~~ghyvayv~~ 822 (877)
T KOG1873|consen 744 NKAPPVLTIHLKRFFQDIRGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGT-MSYGHYVAYVRG 822 (877)
T ss_pred ccCCceeeehHhhhhhhhhchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceecccc-ccCCcchhhhhc
Confidence 99999999999999988 445789999999999999988875432 235779999999999999 999999999984
Q ss_pred ---------------------CCCcEEEEeCCCceeeCcccccCCCcEEEEEEEC
Q 008741 522 ---------------------FNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 555 (555)
Q Consensus 522 ---------------------~~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~RV 555 (555)
+.++||+..|++|+++++++|++.+||||||+||
T Consensus 823 ~t~~~~~~~~~~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 823 GTFLDLSAPSNSKDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred cchhhccCccccccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 2478999999999999999999999999999998
No 25
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-41 Score=333.42 Aligned_cols=220 Identities=37% Similarity=0.586 Sum_probs=187.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcccccccccCCcccccccccEEeEEE
Q 008741 303 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382 (555)
Q Consensus 303 ~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i 382 (555)
.||||+|||..+|+.|+.++...... ........++|.++|.|.+...+
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~-------------------------------~~~~~~~~~~i~~~F~~~~~~~~ 69 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKR-------------------------------TSDSSSLKSLIHDLFGGKLESTI 69 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-------------------------------ccccccCCchhhhhcccEEeeEE
Confidence 58999999999999999998654321 00001123469999999999999
Q ss_pred Ee-cCCccceeeecceeeeeeecccc--ccCHHHHHHhhcCCcCCcccccCCCCCCcceeEEEEEEeccCCceEEEEEee
Q 008741 383 KA-QGNKASATVQPFLLLHLDIYSEA--VHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMR 459 (555)
Q Consensus 383 ~C-~c~~~s~~~e~f~~LsL~I~~~~--~~sLe~~L~~~~~~E~l~g~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~R 459 (555)
.| .|+..+.....+..+.|++|... ..+|+++|+.++..+.+++..|..|+....+.+.++..|.++|++|+|+|+|
T Consensus 70 ~c~~c~~~~~~~~~~~~l~l~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R 149 (255)
T cd02257 70 VCLECGHESVSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKR 149 (255)
T ss_pred ECCCCCCCccCcccceeEEeeccCCCCCCCcHHHHHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEeec
Confidence 99 78777778788888888888654 6899999999999999999999988644566888999999999999999999
Q ss_pred eEeCC-CCceeccceeeeCceeecCCccc-----cCCCCCCccEEEEEEEEEeeCCCCCceEEEEEecCC-CcEEEEeCC
Q 008741 460 FSYGS-QGSTKLHKSVRFPLQLVLGRDLL-----VTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFN-DQWLHFDDA 532 (555)
Q Consensus 460 f~~~~-~~~~Ki~~~V~fp~~Ldl~~~~~-----~~~~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~~-~~W~~fnDs 532 (555)
|.++. ....|+..+|.||.+|++..++. .........|+|+|||+|.|.+..+|||+||+|.+. ++||+|||.
T Consensus 150 ~~~~~~~~~~k~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~ 229 (255)
T cd02257 150 FSFNEDGTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDD 229 (255)
T ss_pred eeeccccccccCCCeEeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEecc
Confidence 99986 67789999999999999988764 233456889999999999999779999999999975 899999999
Q ss_pred CceeeCcccc-----cCCCcEEEEEE
Q 008741 533 SVTAIGTSKV-----LHDQAYVLFYK 553 (555)
Q Consensus 533 ~V~~vs~~~v-----~~~~aYlLfY~ 553 (555)
.|++++.+++ ...+||||||+
T Consensus 230 ~V~~v~~~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 230 KVTEVSEEEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred ccEEcCHHHhhhccCCCCceEEEEEC
Confidence 9999999998 46799999996
No 26
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-42 Score=362.09 Aligned_cols=310 Identities=29% Similarity=0.432 Sum_probs=252.5
Q ss_pred cCCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhh-hccCCC-CCCCcHHHHHHHHHHHhcCCCCCCCccccccccCC
Q 008741 197 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQEL-RTRDIP-KAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDI 274 (555)
Q Consensus 197 ~~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~-~~~~~~-~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~ 274 (555)
-....+||.|+|+|||||++||+|.+.+..+...+.. +..... ....++.+++..++..++....
T Consensus 157 ~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~------------- 223 (492)
T KOG1867|consen 157 TALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHN------------- 223 (492)
T ss_pred eeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCC-------------
Confidence 3446799999999999999999999988888865543 332222 2367889999999999986652
Q ss_pred CCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCC
Q 008741 275 GRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPK 354 (555)
Q Consensus 275 ~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (555)
..++.|..+...+++..|.+ .++.|||||||+..+++.+|.+. +..+...
T Consensus 224 ~~~~sp~~~l~~~~k~~~~~-----~g~~Qqda~eF~~~~~~~~~~~~-~~~~k~~------------------------ 273 (492)
T KOG1867|consen 224 RTPYSPFELLNLVWKHSPNL-----AGYEQQDAHEFLIALLDRLHREK-DDCGKSL------------------------ 273 (492)
T ss_pred CCCcChHHHHHHHHHhCccc-----ccccccchHHHHHHhcccccccc-ccccccc------------------------
Confidence 37899999999999999987 77999999999999999999886 1100000
Q ss_pred CCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeecccc--------ccCHHHHHHhhcCCcCCc
Q 008741 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA--------VHTIEDALRLFSAPENLE 425 (555)
Q Consensus 355 ~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~--------~~sLe~~L~~~~~~E~l~ 425 (555)
...+.....+++++.+|.|.+.+.++| .|...+.+.++|++|+|+||... ..++.++++.+...+...
T Consensus 274 ---~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~ 350 (492)
T KOG1867|consen 274 ---IASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLG 350 (492)
T ss_pred ---ccccCCcccccccceeecceeccceeehhhcceeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcC
Confidence 000000024578999999999999999 78888899999999999998431 256999999988888765
Q ss_pred ccccCCCC-CCcceeEEEEEEeccCCceEEEEEeeeEeCCCCce-eccceeeeCceeecCCccccC----CCCCCccEEE
Q 008741 426 GYRTSSTG-NAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST-KLHKSVRFPLQLVLGRDLLVT----PSAEGRKYEL 499 (555)
Q Consensus 426 g~~c~~c~-~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~-Ki~~~V~fp~~Ldl~~~~~~~----~~~~~~~Y~L 499 (555)
...+..|. |..++.+.++..|.++|.+|.+|++||.+...... |++..|.||..|+|.+|+..+ .+.....|+|
T Consensus 351 ~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L 430 (492)
T KOG1867|consen 351 KDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYEL 430 (492)
T ss_pred cccccccCCcccccccccccccccCCceeeeeeccccccccccccccCcccccchhhcCCccccccccccCCCCCceEEE
Confidence 54444442 35677999999999999999999999999844433 999999999999999998752 1235799999
Q ss_pred EEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceeeCcccccCCCcEEEEEEE
Q 008741 500 VATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 554 (555)
Q Consensus 500 ~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~R 554 (555)
.|||+|+|. .++|||+||.|. .+.||+|||+.|+.++.++|++..||+|||.+
T Consensus 431 ~AVV~H~G~-~~SGHY~aY~r~-~~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~ 483 (492)
T KOG1867|consen 431 RAVVVHHGT-VGSGHYVAYRRQ-SGGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQ 483 (492)
T ss_pred EEEEEeccC-CCCCceEEEEEe-CCCcEEEcCeEEEEeeHHHhhhchhhheehhH
Confidence 999999999 999999999999 55699999999999999999999999999975
No 27
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-42 Score=360.02 Aligned_cols=298 Identities=27% Similarity=0.410 Sum_probs=241.2
Q ss_pred ccccCCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhcc-CCC--CCCCcHHHHHHHHHHHhcCCCCCCCcccccc
Q 008741 194 KSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-DIP--KAGYPTLTAFVGFVSDFDTPSGGSSKKKNIS 270 (555)
Q Consensus 194 ~~~~~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~-~~~--~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~ 270 (555)
.+..+..-+||+|-|+|||||+++|=|.++|.+|+.+..+... +.+ ..+..+++.++.++..+...
T Consensus 88 gsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s----------- 156 (944)
T KOG1866|consen 88 GSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAAS----------- 156 (944)
T ss_pred CCCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHH-----------
Confidence 3455556799999999999999999999999999988766433 212 11223778888888766321
Q ss_pred ccCCCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhh
Q 008741 271 VLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWET 350 (555)
Q Consensus 271 ~~~~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (555)
.-.++-|..|=..++-...-+ ...+||||-||+..|||.+++.+++...
T Consensus 157 ---~lQyyVPeg~Wk~Fr~~~~pl-----n~reqhDA~eFf~sLld~~De~LKklg~----------------------- 205 (944)
T KOG1866|consen 157 ---QLQYYVPEGFWKQFRLWGEPL-----NLREQHDALEFFNSLLDSLDEALKKLGH----------------------- 205 (944)
T ss_pred ---hhhhhcchhHHHHhhccCCcc-----chHhhhhHHHHHHHHHHHHHHHHHHhCC-----------------------
Confidence 114566777666555443332 5568999999999999999999877642
Q ss_pred hCCCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCccc--
Q 008741 351 VGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGY-- 427 (555)
Q Consensus 351 ~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~-- 427 (555)
|.++.+.|+|.....-.| .|.+.....|+|..|+|.|. ..+|+++|++|.+.|.++|.
T Consensus 206 ----------------p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~---~~nLeesLeqfv~gevlEG~nA 266 (944)
T KOG1866|consen 206 ----------------PQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIR---HQNLEESLEQFVKGEVLEGANA 266 (944)
T ss_pred ----------------cHHHHHHhcCccchhhhhccCCcccCccccceeeeeecc---cchHHHHHHHHHHHHHhcCcch
Confidence 335888999999999999 78887899999999999996 57999999999999999994
Q ss_pred -ccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeC--CCCceeccceeeeCceeecCCccccC---------------
Q 008741 428 -RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLVT--------------- 489 (555)
Q Consensus 428 -~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~--~~~~~Ki~~~V~fp~~Ldl~~~~~~~--------------- 489 (555)
.|++| ..++...+++.|.+||++|.|||+||.|| .....|.++.+.||.+|||.+|....
T Consensus 267 YhCeKC--deK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~ 344 (944)
T KOG1866|consen 267 YHCEKC--DEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAKLEGENVESGQQL 344 (944)
T ss_pred hhhhhh--hhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCceeehhhhhhccccCCcCccc
Confidence 45555 44667888999999999999999999999 55678999999999999999997542
Q ss_pred -CCCCCccEEEEEEEEEeeCCCCCceEEEEEecC----CCcEEEEeCCCceeeCcccccC--------------------
Q 008741 490 -PSAEGRKYELVATVTHHGRDPSKGHYTADARYF----NDQWLHFDDASVTAIGTSKVLH-------------------- 544 (555)
Q Consensus 490 -~~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~----~~~W~~fnDs~V~~vs~~~v~~-------------------- 544 (555)
......+|+|+|||+|+|. +++|||++||+.. .++||+|||..|++++..++..
T Consensus 345 e~s~~t~~YeLvGVlvHSGq-AsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~ 423 (944)
T KOG1866|consen 345 EQSAGTTKYELVGVLVHSGQ-ASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRW 423 (944)
T ss_pred ccccCcceeEEEEEEEeccc-ccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHh
Confidence 1246789999999999999 9999999999873 5689999999999998775531
Q ss_pred CCcEEEEEEEC
Q 008741 545 DQAYVLFYKQV 555 (555)
Q Consensus 545 ~~aYlLfY~RV 555 (555)
-+||||||+|+
T Consensus 424 WNAYmlFYer~ 434 (944)
T KOG1866|consen 424 WNAYMLFYERM 434 (944)
T ss_pred hhhHHHHHHHh
Confidence 19999999985
No 28
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-39 Score=362.07 Aligned_cols=325 Identities=29% Similarity=0.480 Sum_probs=278.3
Q ss_pred cccCCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccC------CCCCCCcHHHHHHHHHHHhcCCCCCCCcccc
Q 008741 195 SVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD------IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKN 268 (555)
Q Consensus 195 ~~~~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~------~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~ 268 (555)
.....+.+||.|+|||||||+.+|||.+++.++++++...... .......+...+..++..+|....
T Consensus 240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~------- 312 (842)
T KOG1870|consen 240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNK------- 312 (842)
T ss_pred CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCc-------
Confidence 3344466999999999999999999999999999987543222 223455677888999999886541
Q ss_pred ccccCCCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCc-cCCCCccccccchhhhh
Q 008741 269 ISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGEST-SINGANTALVSLAEEDE 347 (555)
Q Consensus 269 ~~~~~~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~-~~~~~~~~~~~~~~~~~ 347 (555)
..+.|..++..+..+.+.| .++.|||.|||+.+|+|.+|+.+.+....+. ...+.........+.+.
T Consensus 313 -------~~v~~~~~~~~~~~~a~~~-----~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~ 380 (842)
T KOG1870|consen 313 -------SAVAPTSFRTSLASFASEF-----SGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEV 380 (842)
T ss_pred -------cccCchhhhhhhhhccccc-----cCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHH
Confidence 3699999999999998876 8889999999999999999999988877633 22344444566677889
Q ss_pred hhhhCCCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeecc---------------------
Q 008741 348 WETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYS--------------------- 405 (555)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~--------------------- 405 (555)
|..+..++.+ +|.++|.|.+.+.+.| .|.+.+.++++|.+|+||+|.
T Consensus 381 ~~~~~~~~~s-----------~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~ 449 (842)
T KOG1870|consen 381 WDYHLKRNRS-----------VIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGA 449 (842)
T ss_pred HHhhhhhccc-----------eeeeeecceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhh
Confidence 9999998887 4899999999999999 899999999999999999873
Q ss_pred --------------------------------------------------------------------------------
Q 008741 406 -------------------------------------------------------------------------------- 405 (555)
Q Consensus 406 -------------------------------------------------------------------------------- 405 (555)
T Consensus 450 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 529 (842)
T KOG1870|consen 450 LGVSVAKNGRIRDLLEYLSRTVGLLSWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVR 529 (842)
T ss_pred eeeeccccchHHHHHHHHHHHhccchhhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEe
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 008741 406 -------------------------------------------------------------------------------- 405 (555)
Q Consensus 406 -------------------------------------------------------------------------------- 405 (555)
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~ 609 (842)
T KOG1870|consen 530 FRSRLPRSKGIRSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSS 609 (842)
T ss_pred eccccccccCcccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCccccccCCCccccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 008741 406 -------------------------------------------------------------------------------- 405 (555)
Q Consensus 406 -------------------------------------------------------------------------------- 405 (555)
T Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (842)
T KOG1870|consen 610 VSRDPSEDDNSDQDLSLECLSEESALRFFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRS 689 (842)
T ss_pred ccCCChhHhccccccchhhccCcccccccccccccccccccccCCCceeecccChhhccccccccccccccccccccccc
Confidence
Q ss_pred ---ccccCHHHHHHhhcCCcCCcc---cccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCce
Q 008741 406 ---EAVHTIEDALRLFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ 479 (555)
Q Consensus 406 ---~~~~sLe~~L~~~~~~E~l~g---~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~~ 479 (555)
....+|++||+.|+.+|.|.. +.|+.| +..+.|.|+..+++||+||+|||+||.+......|+.+.|+||..
T Consensus 690 ~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~C--ke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~ 767 (842)
T KOG1870|consen 690 KGSPAPNSLESCLELFSEPETLGKDDRWYCPQC--KELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLG 767 (842)
T ss_pred cCCCCcccHHHHHHhhcchhcCCccccccChHH--HHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCc
Confidence 125789999999999999985 445544 677899999999999999999999999998888999999999997
Q ss_pred -eecCCccccCCCCCCccEEEEEEEEEeeCCCCCceEEEEEec-CCCcEEEEeCCCceeeCcccccCCCcEEEEEEEC
Q 008741 480 -LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 555 (555)
Q Consensus 480 -Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~-~~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~RV 555 (555)
||+++|+..... ..|+|+||++|+|. +.+|||+||+|. .+++||.|||+.|.+++++++....||+|||+|.
T Consensus 768 ~ld~s~~~~~~~~---~~Y~l~av~nHyG~-l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~ 841 (842)
T KOG1870|consen 768 SLDLSEFVVNKEQ---VLYDLYAVGNHYGQ-LSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRL 841 (842)
T ss_pred CCCcchhhccCcc---ceeeeeeeecccCC-cCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEec
Confidence 999999865433 99999999999999 999999999999 5889999999999999999999999999999994
No 29
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-39 Score=371.77 Aligned_cols=344 Identities=25% Similarity=0.366 Sum_probs=275.2
Q ss_pred CCCCcccceeccCC-CccCCCcccccccCCCCCCcc---------CCcccCCC--CcccccCC-CCcccccCCCchhHHH
Q 008741 149 NPSPISKFHVLCDG-NIDGRDQNAAACNSSISGSKE---------VPMKAINE--PVKSVKDL-LPRGLINSGNLCFLNA 215 (555)
Q Consensus 149 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~--~~~~~~~~-~~~GL~NlGNTCYlNS 215 (555)
.+.+.|.+...+.+ ++..++.++....+....-.. .....+.. .....+.. .|+||.|+||||||||
T Consensus 105 ~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~d~k~~tg~~vGL~N~GaTCY~Ns 184 (1093)
T KOG1863|consen 105 EKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLMNPYDSKRLTGFPVGLKNLGATCYVNS 184 (1093)
T ss_pred hhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcccchhhhhhcCCCCccccCCCceeeehH
Confidence 34556777777777 777777666666652211111 11112222 33334444 4599999999999999
Q ss_pred HHHHHhCChHHHHHHHhhhc-cCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCCChHHHHHHHHhcCCCC
Q 008741 216 TLQALMSCSPFVQLLQELRT-RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDV 294 (555)
Q Consensus 216 vLQ~L~~~p~fr~~L~~~~~-~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~l~~~~p~~ 294 (555)
+||+|+.++.||+.++.++. .........+..+|+.||..|+.... .++.+..+...++...
T Consensus 185 llQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~--------------k~Vdt~~~~~~~~~~~--- 247 (1093)
T KOG1863|consen 185 LLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKR--------------KYVDTSELTKSLGWDS--- 247 (1093)
T ss_pred HHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCC--------------CCcCchhhhhhhhccc---
Confidence 99999999999999998873 12223345688999999999986552 5899998888876654
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcccccccccCCccccccc
Q 008741 295 PNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIF 374 (555)
Q Consensus 295 ~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF 374 (555)
...+.|||+|||++.|+|.|++.+..... .+.|.++|
T Consensus 248 ----~~~~~QqDvqEf~~~l~d~LE~~~~~~~~---------------------------------------~~~l~~lf 284 (1093)
T KOG1863|consen 248 ----NDSFEQQDVQEFLTKLLDWLEDSMIDAKV---------------------------------------ENTLQDLF 284 (1093)
T ss_pred ----ccHHhhhhHHHHHHHHHHHHHhhccchhh---------------------------------------hhhhhhhh
Confidence 14469999999999999999998744321 12489999
Q ss_pred ccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcccccCCCCCCcceeEEEEEEeccCCceE
Q 008741 375 GGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKIL 453 (555)
Q Consensus 375 ~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c~~c~~~~~~~a~k~~~i~~lP~vL 453 (555)
.|.+.+.+.| +|...+.+.+.|+++.|++. +..+++++|+.|+..|.++|.++.+++|++.+.|.+.+.+..||++|
T Consensus 285 ~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~~--g~~nl~~sf~~y~~~E~l~gdn~~~~~~~~~~~a~k~~~f~~lPpvl 362 (1093)
T KOG1863|consen 285 TGKMKSVIKCIDVDFESSRSESFLDLQLNGK--GVKNLEDSLHLYFEAEILLGDNKYDAECHGLQDAKKGVLFDSLPPVL 362 (1093)
T ss_pred cCCcceEEEEEeeeeeccccccccCcccccc--chhhHHHHHHHhhhHHHhcCCccccccccchhhhhcceeeccCCchh
Confidence 9999999999 77888889999999999994 67789999999999999999999989999999999999999999999
Q ss_pred EEEEeeeEeC--CCCceeccceeeeCceeecCCcccc--CC-CCCCccEEEEEEEEEeeCCCCCceEEEEEecC-CCcEE
Q 008741 454 ILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLV--TP-SAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWL 527 (555)
Q Consensus 454 iI~L~Rf~~~--~~~~~Ki~~~V~fp~~Ldl~~~~~~--~~-~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~-~~~W~ 527 (555)
.|+|+||.++ .+...|+++.+.||..|++.+|+.. .. ....+.|.|+||++|.|. .++|||++|++.+ .++|+
T Consensus 363 ~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~-~~~ghy~~~i~~~~~~~w~ 441 (1093)
T KOG1863|consen 363 FIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGD-AHSGHYVAYINPKLDGKWV 441 (1093)
T ss_pred hhhhhheeeeccCCceeehhhccCCccccccchhccccchhhhhccceeccchhhccccc-ccCccceeeecchhhccce
Confidence 9999999998 6678999999999999999999763 22 233359999999999777 9999999999964 78999
Q ss_pred EEeCCCceeeCcccccCC----------------CcEEEEEEEC
Q 008741 528 HFDDASVTAIGTSKVLHD----------------QAYVLFYKQV 555 (555)
Q Consensus 528 ~fnDs~V~~vs~~~v~~~----------------~aYlLfY~RV 555 (555)
+|||..|+.++..+++.. .||+|+|.|.
T Consensus 442 kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~ 485 (1093)
T KOG1863|consen 442 KFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRD 485 (1093)
T ss_pred eccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEec
Confidence 999999999998776531 3899999874
No 30
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-38 Score=316.52 Aligned_cols=297 Identities=22% Similarity=0.361 Sum_probs=238.2
Q ss_pred CcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcH---HHHHHHHHHHhcCCCCCCCccccccccCCCCC
Q 008741 201 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPT---LTAFVGFVSDFDTPSGGSSKKKNISVLDIGRP 277 (555)
Q Consensus 201 ~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~---~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 277 (555)
.+||.|+||+||+||+||.|+..-.+...+..+..........|. -|.+.+|+..|..-- .......
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p----------~~~y~ng 372 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETP----------DNEYVNG 372 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCC----------CccccCC
Confidence 589999999999999999999998888766554443444334444 455555555443111 0123477
Q ss_pred CChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCc
Q 008741 278 FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKS 357 (555)
Q Consensus 278 v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (555)
++|.+|..++++-++.| +..+||||+|||.+||+.|+......
T Consensus 373 i~p~~fk~~igq~h~eF-----g~~~QQDA~EFLlfLL~kirk~~~S~-------------------------------- 415 (749)
T COG5207 373 ISPLDFKMLIGQDHPEF-----GKFAQQDAHEFLLFLLEKIRKGERSY-------------------------------- 415 (749)
T ss_pred cChhhHHHHHcCCchhh-----hhhhhhhHHHHHHHHHHHHhhccchh--------------------------------
Confidence 99999999999999997 88899999999999999998753211
Q ss_pred ccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccc-cccCHHHHHHhhcCCcCCcccccCCCCCC
Q 008741 358 AVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE-AVHTIEDALRLFSAPENLEGYRTSSTGNA 435 (555)
Q Consensus 358 ~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~-~~~sLe~~L~~~~~~E~l~g~~c~~c~~~ 435 (555)
..++|.++|..++...+.| .|..++..+++...+.+++... ...++.++++.||.++.++ |.|..| +
T Consensus 416 --------~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE-~~CenC--k 484 (749)
T COG5207 416 --------LIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE-WSCENC--K 484 (749)
T ss_pred --------cCCCcchhhhhhhcceecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee-eehhhh--c
Confidence 1235889999999999999 8999999999999888887532 4578999999999999999 999988 4
Q ss_pred cceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCce--eecCCccccC------------------------
Q 008741 436 GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ--LVLGRDLLVT------------------------ 489 (555)
Q Consensus 436 ~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~~--Ldl~~~~~~~------------------------ 489 (555)
++..|.++.-|.+||++||+|..||...+....|+..++.+... +++..|+...
T Consensus 485 ~K~~a~~k~~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~q 564 (749)
T COG5207 485 GKKKASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQ 564 (749)
T ss_pred CcccccccchhhccCceeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHHHH
Confidence 56689999999999999999999999998888899999988775 6665554110
Q ss_pred --------------------------------------------------------------------------------
Q 008741 490 -------------------------------------------------------------------------------- 489 (555)
Q Consensus 490 -------------------------------------------------------------------------------- 489 (555)
T Consensus 565 L~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~ 644 (749)
T COG5207 565 LVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMD 644 (749)
T ss_pred HHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHH
Confidence
Q ss_pred ---------------C---------------------CCCCccEEEEEEEEEeeCCCCCceEEEEEecC---CCcEEEEe
Q 008741 490 ---------------P---------------------SAEGRKYELVATVTHHGRDPSKGHYTADARYF---NDQWLHFD 530 (555)
Q Consensus 490 ---------------~---------------------~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~---~~~W~~fn 530 (555)
+ -.....|.|.|||||.|.++++||||+|||.. .-+|+.+|
T Consensus 645 ~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~n 724 (749)
T COG5207 645 MNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKN 724 (749)
T ss_pred ccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCcccceeEEeccCCcccccceEEEEecccCcceeEEEEc
Confidence 0 01244599999999999999999999999984 23799999
Q ss_pred CCCceeeCcccccCCCcEEEEEEEC
Q 008741 531 DASVTAIGTSKVLHDQAYVLFYKQV 555 (555)
Q Consensus 531 Ds~V~~vs~~~v~~~~aYlLfY~RV 555 (555)
|+.+-.++.-++++.+.||+||+|.
T Consensus 725 Dek~v~~~svE~~k~nGYiylf~R~ 749 (749)
T COG5207 725 DEKTVLNSSVEVLKDNGYIYLFKRC 749 (749)
T ss_pred cchheehhhHHHHhhCCeEEEEecC
Confidence 9999999888889999999999984
No 31
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.3e-36 Score=297.92 Aligned_cols=237 Identities=18% Similarity=0.143 Sum_probs=192.9
Q ss_pred CCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCC
Q 008741 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPF 278 (555)
Q Consensus 199 ~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v 278 (555)
+..+||.|.|.|||+||+||+|+++|+||+++.. ....+..+.|++++|..|+..+
T Consensus 13 t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~--~~~~~~~~~~l~~el~~lfs~~---------------------- 68 (268)
T cd02672 13 TNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAI--ILVACPKESCLLCELGYLFSTL---------------------- 68 (268)
T ss_pred ccccccccCCccchHHHHHHHHHhcHHHHHHHHh--hcccCCcCccHHHHHHHHHHHH----------------------
Confidence 3568999999999999999999999999998432 2244566789999999988211
Q ss_pred ChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcc
Q 008741 279 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSA 358 (555)
Q Consensus 279 ~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (555)
.|-|-++|++.+..+....
T Consensus 69 ----------------------------iq~F~~fll~~i~~~~~~~--------------------------------- 87 (268)
T cd02672 69 ----------------------------IQNFTRFLLETISQDQLGT--------------------------------- 87 (268)
T ss_pred ----------------------------HHHHHHHHHHHHHHHhccc---------------------------------
Confidence 1448889999998664110
Q ss_pred cccccccCCcccccccccEEeEEEEecCCccceeeecceeeeeeeccc---cccCHHHHHHhhcCCcCCcccccCCCCCC
Q 008741 359 VTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSE---AVHTIEDALRLFSAPENLEGYRTSSTGNA 435 (555)
Q Consensus 359 ~~~~~~~~~s~I~~lF~G~l~s~i~C~c~~~s~~~e~f~~LsL~I~~~---~~~sLe~~L~~~~~~E~l~g~~c~~c~~~ 435 (555)
+ ..|++.+.+.+++++|+|++|.. ...+|++||+.++..|....+.|+.|+
T Consensus 88 ---------------~---------~~C~~~s~~~~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~~~~~C~~C~-- 141 (268)
T cd02672 88 ---------------P---------FSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKVTKAWCDTCC-- 141 (268)
T ss_pred ---------------C---------CCCCceeeccccceeeeeecCccccccCCCHHHHHHHHhhhhhcccccccccC--
Confidence 0 35788899999999999999853 357999999999999988778888874
Q ss_pred cceeEEEEEEeccCCc----eEEEEEeeeEeCC-------CCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEE
Q 008741 436 GVVTAKKSVKIQTLSK----ILILHLMRFSYGS-------QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVT 504 (555)
Q Consensus 436 ~~~~a~k~~~i~~lP~----vLiI~L~Rf~~~~-------~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~ 504 (555)
..+.+.++..|+++|+ ||+|||+||.... ....|+...|.||..+++..... ........|+|+|||+
T Consensus 142 ~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~-~~~~~~~~Y~L~gvV~ 220 (268)
T cd02672 142 KYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKN-RGQESIYKYELVGYVC 220 (268)
T ss_pred cccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhc-cCCCCCceEEEEEEEE
Confidence 5679999999999999 9999999999653 12467888999998876654432 2234567999999999
Q ss_pred EeeCCCCCceEEEEEecC-----CCcEEEEeCCCceeeCcccccCCCcEEEEEE
Q 008741 505 HHGRDPSKGHYTADARYF-----NDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 553 (555)
Q Consensus 505 H~G~s~~sGHYva~vr~~-----~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~ 553 (555)
|.|.+..+||||||||.+ .++||.|||..|++++. .||||||+
T Consensus 221 hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~aYiLfY~ 268 (268)
T cd02672 221 EINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYILLYQ 268 (268)
T ss_pred EecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------hheeeecC
Confidence 999866999999999985 57899999999999988 89999995
No 32
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=323.33 Aligned_cols=272 Identities=21% Similarity=0.343 Sum_probs=220.1
Q ss_pred cccCCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCC
Q 008741 195 SVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDI 274 (555)
Q Consensus 195 ~~~~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~ 274 (555)
...+.+.+||.|..-|||+|+.+|+|+.+|.|++.++-.+.
T Consensus 81 ~~~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~~--------------------------------------- 121 (1203)
T KOG4598|consen 81 DENGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSEN--------------------------------------- 121 (1203)
T ss_pred ccCCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCCc---------------------------------------
Confidence 34455679999999999999999999999999998872111
Q ss_pred CCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCC
Q 008741 275 GRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPK 354 (555)
Q Consensus 275 ~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (555)
.++....+.. .+.+ ..-..+.|||.||+.+.++|+|+...+....
T Consensus 122 -~~~et~dlt~---sfgw----~s~ea~~qhdiqelcr~mfdalehk~k~t~~--------------------------- 166 (1203)
T KOG4598|consen 122 -DSLETKDLTQ---SFGW----TSNEAYDQHDVQELCRLMFDALEHKWKGTEH--------------------------- 166 (1203)
T ss_pred -ccccchhhHh---hcCC----CcchhhhhhhHHHHHHHHHHHHHhhhcCchH---------------------------
Confidence 1111111111 1111 1124468999999999999999987643221
Q ss_pred CCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeecccc----ccCHHHHHHhhcCCcCCcccc-
Q 008741 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA----VHTIEDALRLFSAPENLEGYR- 428 (555)
Q Consensus 355 ~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~----~~sLe~~L~~~~~~E~l~g~~- 428 (555)
.++|.+++.|.+...+.| .|+..+++.+.|.+|.|++.+-+ ..+++++|+.|..+|.++|.+
T Consensus 167 ------------~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nq 234 (1203)
T KOG4598|consen 167 ------------EKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQ 234 (1203)
T ss_pred ------------HHHHHHHhcchHHHHHHHHHcCccccccceeecccccccCCcchhhhhhHHHHHHHhcChhhcCCccH
Confidence 235999999999999999 89999999999999999987533 468999999999999999955
Q ss_pred --cCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeC--CCCceeccceeeeCceeecCCccccC---------------
Q 008741 429 --TSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLVT--------------- 489 (555)
Q Consensus 429 --c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~--~~~~~Ki~~~V~fp~~Ldl~~~~~~~--------------- 489 (555)
|.+| +.++.|.|.+.|..+|-+|+|||+||.++ ...+.|+++++.||..|||+.|+-.+
T Consensus 235 y~ce~c--k~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~ 312 (1203)
T KOG4598|consen 235 YMCENC--KSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKN 312 (1203)
T ss_pred HHHhhh--hhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccc
Confidence 5555 56779999999999999999999999988 55678999999999999998776210
Q ss_pred --------------------------------------------------CCCCCccEEEEEEEEEeeCCCCCceEEEEE
Q 008741 490 --------------------------------------------------PSAEGRKYELVATVTHHGRDPSKGHYTADA 519 (555)
Q Consensus 490 --------------------------------------------------~~~~~~~Y~L~gvI~H~G~s~~sGHYva~v 519 (555)
....+..|+|++|++|.|. +.+|||+|||
T Consensus 313 ~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~-a~gghy~ayi 391 (1203)
T KOG4598|consen 313 KSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGN-AAGGHYFAYI 391 (1203)
T ss_pred cccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCC-CCCceeeeee
Confidence 0035789999999999999 9999999999
Q ss_pred ecC-CCcEEEEeCCCceeeCcccccC-------------CCcEEEEEEEC
Q 008741 520 RYF-NDQWLHFDDASVTAIGTSKVLH-------------DQAYVLFYKQV 555 (555)
Q Consensus 520 r~~-~~~W~~fnDs~V~~vs~~~v~~-------------~~aYlLfY~RV 555 (555)
++- +++||+|||.+|+-++..++.. .+||||.|+||
T Consensus 392 k~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~i 441 (1203)
T KOG4598|consen 392 KNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRI 441 (1203)
T ss_pred cccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhc
Confidence 984 6789999999999999988853 39999999997
No 33
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-35 Score=290.12 Aligned_cols=352 Identities=34% Similarity=0.526 Sum_probs=271.9
Q ss_pred CCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccC--CCCCCCcHHHHHHHHHHHhcCCCCCCCc-ccc------
Q 008741 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD--IPKAGYPTLTAFVGFVSDFDTPSGGSSK-KKN------ 268 (555)
Q Consensus 198 ~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~--~~~~~~~~~~~l~~Ll~~l~~~~~~~~~-~~~------ 268 (555)
+..|+|+.|-||-|||||+||+|..|++|.+.+..+.... ......+++.++..+...+.......+. +..
T Consensus 25 ~i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~ 104 (420)
T KOG1871|consen 25 PIDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEH 104 (420)
T ss_pred ccCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCcccc
Confidence 4689999999999999999999999999999987665221 1234567888888888887643321111 000
Q ss_pred -------ccccCCCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCC--------
Q 008741 269 -------ISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSIN-------- 333 (555)
Q Consensus 269 -------~~~~~~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~-------- 333 (555)
..-...+.++-|..+...+... +++ .....|+|+||.|||.++||.||+|+.+........+
T Consensus 105 ~~~~ses~~~d~~~dav~~d~~~~~l~t~-~~~--e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~ 181 (420)
T KOG1871|consen 105 VVEKSESNKSDLQGDAVKPDPIYLDLLTM-SRF--ESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGL 181 (420)
T ss_pred ccchhhhhhhcccCccccCCchhhhcccC-Cch--hhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccc
Confidence 0111122333333333322221 222 2235589999999999999999999877655432211
Q ss_pred --------CCccccccchhhhhhhhhCCCCCcccccccccCCcccccccccEEeEEEEecCCccceeeecceeeeeeecc
Q 008741 334 --------GANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYS 405 (555)
Q Consensus 334 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~c~~~s~~~e~f~~LsL~I~~ 405 (555)
.....-.....+..|...+..++..+.|..+...++|.++|+|++++.+.-...+.+.+.+||.-|.|+|..
T Consensus 182 i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~tlqldiq~ 261 (420)
T KOG1871|consen 182 INNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKESATLQPFFTLQLDIQS 261 (420)
T ss_pred ccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccccccccCccceeeeeeec
Confidence 111111222345678889999999999999999999999999999999988777778999999999999988
Q ss_pred ccccCHHHHHHhhcCCcCCcccccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeC-CCCceeccceeeeCceeecCC
Q 008741 406 EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG-SQGSTKLHKSVRFPLQLVLGR 484 (555)
Q Consensus 406 ~~~~sLe~~L~~~~~~E~l~g~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~-~~~~~Ki~~~V~fp~~Ldl~~ 484 (555)
....++++++..+...|.+.++... . +..+.+.+++.+.+||++|++||+||.|. .++..|+.+.+++|-.+.+..
T Consensus 262 ~~i~sv~~ales~~~re~lp~~st~-s--~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~ 338 (420)
T KOG1871|consen 262 EKIHSVQDALESLVARESLPGYSTK-S--GQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISK 338 (420)
T ss_pred cccCCHHHHhhccChhhcccceecC-C--CCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeech
Confidence 8889999999999999999987764 2 45668889999999999999999999998 778899999999999999877
Q ss_pred ccccCC-----CCCCccEEEEEEEEEeeCCCCCceEEEEEecC-CCcEEEEeCCCceeeCcccccC----CCcEEEEEEE
Q 008741 485 DLLVTP-----SAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLH----DQAYVLFYKQ 554 (555)
Q Consensus 485 ~~~~~~-----~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~-~~~W~~fnDs~V~~vs~~~v~~----~~aYlLfY~R 554 (555)
.+.... ......|.|.+||.|+|.++..|||++.+.+. -+.|+.+||..|..+..++|.+ .+||+|.|+|
T Consensus 339 ~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~ 418 (420)
T KOG1871|consen 339 NCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIE 418 (420)
T ss_pred hhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeee
Confidence 665421 24577899999999999999999999999874 3459999999999999999975 4999999997
Q ss_pred C
Q 008741 555 V 555 (555)
Q Consensus 555 V 555 (555)
.
T Consensus 419 ~ 419 (420)
T KOG1871|consen 419 A 419 (420)
T ss_pred c
Confidence 4
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-34 Score=282.82 Aligned_cols=139 Identities=24% Similarity=0.356 Sum_probs=114.6
Q ss_pred eecceeeeeeecc-ccccCHHHHHHhhcCCcCCcccccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCCCCceecc
Q 008741 393 VQPFLLLHLDIYS-EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLH 471 (555)
Q Consensus 393 ~e~f~~LsL~I~~-~~~~sLe~~L~~~~~~E~l~g~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~ 471 (555)
.|.+..|.+|... .+..+|++||+.|+..|. |.++|++|+|||+||.++.+...|++
T Consensus 63 ~e~~l~l~ip~~~~~~~~tLedcLe~~~~~e~----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~ 120 (241)
T cd02670 63 NERLLQIPVPDDDDGGGITLEQCLEQYFNNSV----------------------FAKAPSCLIICLKRYGKTEGKAQKMF 120 (241)
T ss_pred ccceEEeecccCCCCCcCCHHHHHHHHhchhh----------------------hhhCCCeEEEEEEccccCCCcceeCC
Confidence 3555444444432 257899999999998776 88999999999999999876678999
Q ss_pred ceeeeCceeecCCccccCC---------------------CCCCccEEEEEEEEEeeCCCCCceEEEEEecCC-------
Q 008741 472 KSVRFPLQLVLGRDLLVTP---------------------SAEGRKYELVATVTHHGRDPSKGHYTADARYFN------- 523 (555)
Q Consensus 472 ~~V~fp~~Ldl~~~~~~~~---------------------~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~~------- 523 (555)
+.|.||..|||.+|+.... .....+|+|+|||+|+|.++.+|||+||||.+.
T Consensus 121 ~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~ 200 (241)
T cd02670 121 KKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETD 200 (241)
T ss_pred cEECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccc
Confidence 9999999999999976531 234578999999999998899999999999864
Q ss_pred -----CcEEEEeCCCceeeCcc------cccCCCcEEEEEE
Q 008741 524 -----DQWLHFDDASVTAIGTS------KVLHDQAYVLFYK 553 (555)
Q Consensus 524 -----~~W~~fnDs~V~~vs~~------~v~~~~aYlLfY~ 553 (555)
++||+|||..|+.+... .+....||||||+
T Consensus 201 ~~~~~~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 201 NEAYNAQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred cCCCCCeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence 78999999998876532 4567899999996
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=1.8e-33 Score=286.58 Aligned_cols=283 Identities=21% Similarity=0.223 Sum_probs=233.7
Q ss_pred cccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhc-CCCCCCCccccccccCCCCCCCh
Q 008741 202 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFD-TPSGGSSKKKNISVLDIGRPFSP 280 (555)
Q Consensus 202 ~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~-~~~~~~~~~~~~~~~~~~~~v~p 280 (555)
.||.|.+++||+||+||+|+++|++|+.++... .+..+.|++|+|..|+.+|. ... +....+
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~---~c~~e~cL~cELgfLf~ml~~~~~--------------g~~cq~ 63 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL---ECPKEFCLLCELGFLFDMLDSKAK--------------GINCQA 63 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc---CCCccccHHHHHHHHHHHhhhhcC--------------CCcChH
Confidence 499999999999999999999999999998744 25677899999999999997 433 367788
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcccc
Q 008741 281 SMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVT 360 (555)
Q Consensus 281 ~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (555)
..|..+++...... ..+.|+|+++|+++|+++|+.++.......... ..
T Consensus 64 sNflr~l~~~~~a~-----~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~--------------------------~~ 112 (295)
T PF13423_consen 64 SNFLRALSWIPEAA-----ALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHT--------------------------SE 112 (295)
T ss_pred HHHHHHHhcCHHHH-----hcchhHHHHHHHHHHHHHHhHHHHhcCcccccc--------------------------cc
Confidence 89999888764322 335699999999999999999987655321100 00
Q ss_pred cccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccc-cccCHHHHHHhhcCCcCCcccccCCCCCCcce
Q 008741 361 RTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE-AVHTIEDALRLFSAPENLEGYRTSSTGNAGVV 438 (555)
Q Consensus 361 ~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~-~~~sLe~~L~~~~~~E~l~g~~c~~c~~~~~~ 438 (555)
.......+.|.++|+......++| .|+..+.+.+....+.|..|.. ...++.++|+.++..+......|..|+.. +
T Consensus 113 ~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~a~C~~C~~~--~ 190 (295)
T PF13423_consen 113 NSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQTRAWCEKCNKY--Q 190 (295)
T ss_pred cccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccCCCCCccchHHHHHHHHHhhcccccccccccccc--c
Confidence 001113346999999999999999 8999999999998888888763 46799999999999999998899988654 5
Q ss_pred eEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCceeecCCccccCC------CCCCccEEEEEEEEEeeCCCCC
Q 008741 439 TAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTP------SAEGRKYELVATVTHHGRDPSK 512 (555)
Q Consensus 439 ~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~------~~~~~~Y~L~gvI~H~G~s~~s 512 (555)
....+..|.++|+||.|.++|+..+..+..|....+.+|..+++..++.... .....+|+|.|+|||.|.+..+
T Consensus 191 ~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~ 270 (295)
T PF13423_consen 191 PTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIES 270 (295)
T ss_pred ceeeeeeccCCCcEEEEEccCCCcccccccccCCceecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCC
Confidence 7778888999999999999999988666889999999999999988875432 4678899999999999999999
Q ss_pred ceEEEEEecC---CCcEEEEeCCCc
Q 008741 513 GHYTADARYF---NDQWLHFDDASV 534 (555)
Q Consensus 513 GHYva~vr~~---~~~W~~fnDs~V 534 (555)
|||||+||.+ +.+||.|||..|
T Consensus 271 ~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 271 GHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred CceEEEEEcCCCCCCcEEEECcEeC
Confidence 9999999986 468999999765
No 36
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=8.4e-32 Score=290.48 Aligned_cols=331 Identities=27% Similarity=0.392 Sum_probs=244.5
Q ss_pred CCCCcccccCCCchhHH--HHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCC
Q 008741 198 DLLPRGLINSGNLCFLN--ATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIG 275 (555)
Q Consensus 198 ~~~~~GL~NlGNTCYlN--SvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~ 275 (555)
+-..-|..|.+++|+.| ++.|.+..+..++.......... ..........+..+...+....... ...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~ 298 (587)
T KOG1864|consen 229 NERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSL-KRSYIIKEELLTCLLDLFSSISSRK---------KLV 298 (587)
T ss_pred cccccCccccCccccccchhhHHHHHhhhhhcccccchhhcc-cchhhhhHHHHHHhhhhccchhhhc---------ccc
Confidence 33456999999999999 99999999998886544322111 0100011112222222222222111 122
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCC---ccccccchhhhhhhhhC
Q 008741 276 RPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGA---NTALVSLAEEDEWETVG 352 (555)
Q Consensus 276 ~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 352 (555)
..+.|..++..+++....| ..+.|||||||+.++++.+++-+............. +... .....-|..-+
T Consensus 299 ~~i~p~~~~~~~~~~~~~f-----~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~--~~~~~~~~~~~ 371 (587)
T KOG1864|consen 299 GRISPTRFISDLIKENELF-----TNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNS--STSAASWTNKG 371 (587)
T ss_pred cccCcchhhhhhhhcCCcc-----CchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCcc--ccccccccccc
Confidence 6789999999999988876 778999999999999999999876554322211110 0000 00011111111
Q ss_pred CCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcccccCC
Q 008741 353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSS 431 (555)
Q Consensus 353 ~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c~~ 431 (555)
......+++++.+|.|++..+++| .|...+.+.+.|.+++++++.+...++..+|+.|..+|.+.|+.+..
T Consensus 372 --------~~~~~~~~~v~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~ 443 (587)
T KOG1864|consen 372 --------HHKSLRENWVSKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYS 443 (587)
T ss_pred --------cccccchhHHHHhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCccc
Confidence 112234567999999999999999 89999999999999999998777889999999999999999988777
Q ss_pred CC-CCcceeEEEEEEeccCCceEEEEEeeeEeCC--CCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEeeC
Q 008741 432 TG-NAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGR 508 (555)
Q Consensus 432 c~-~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~--~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~ 508 (555)
|. |++.++|.+.+.+.++|.+|+|||+||.+.. ....|+...|.+|.+|.+....... ..+...|.|+|||||.|.
T Consensus 444 c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~-~~~~~~Y~L~avVvH~G~ 522 (587)
T KOG1864|consen 444 CENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDD-NNPDRKYDLVAVVVHLGS 522 (587)
T ss_pred ccccCchhhHHHhccccCCcceeeeehhccccccccccccccccccccccceeeccccccc-cCccceeeEEEEEEeccC
Confidence 74 6789999999999999999999999999983 3458999999999999997544322 122479999999999999
Q ss_pred CCCCceEEEEEecCCCcEEEEeCCCceeeCcccccC---CCcEEEEEEE
Q 008741 509 DPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH---DQAYVLFYKQ 554 (555)
Q Consensus 509 s~~sGHYva~vr~~~~~W~~fnDs~V~~vs~~~v~~---~~aYlLfY~R 554 (555)
+++.|||+||+|..+-.|+.|||..|+.++.++|.. ..+|+++|..
T Consensus 523 ~p~~GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~ 571 (587)
T KOG1864|consen 523 TPNRGHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYV 571 (587)
T ss_pred CCCCcceEEEEeeCCCCceecccccccccCcchhhhccCCCccceeeeE
Confidence 999999999999965559999999999999998864 4777777753
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.9e-30 Score=258.99 Aligned_cols=298 Identities=24% Similarity=0.287 Sum_probs=219.1
Q ss_pred CCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhc-cCCCC---CCCcHHHHHHHHHHHhcCCCCCCCccccccccCCC
Q 008741 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT-RDIPK---AGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIG 275 (555)
Q Consensus 200 ~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~-~~~~~---~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~ 275 (555)
.|+||.|+|||||||+.+|||...|+++..+..... ..... ....+..+++.+|+.|...
T Consensus 104 lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~---------------- 167 (473)
T KOG1872|consen 104 LPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK---------------- 167 (473)
T ss_pred CCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc----------------
Confidence 778999999999999999999999999988764331 11111 1234556777777776522
Q ss_pred CCCChHHHHHHHHhcCCCCCCC-CCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCC
Q 008741 276 RPFSPSMFEAVLKNFTPDVPNS-ISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPK 354 (555)
Q Consensus 276 ~~v~p~~~~~~l~~~~p~~~~~-~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (555)
.++.|..+...+++-.|.|... ..+.+.||||.|++..++-.++..+......+
T Consensus 168 ~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~------------------------- 222 (473)
T KOG1872|consen 168 GAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP------------------------- 222 (473)
T ss_pred CCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc-------------------------
Confidence 6799999999999999988642 33447899999999999999988753222110
Q ss_pred CCcccccccccCCcccccccccEEeEEEEe-cCCcccee--eecceeeeeeeccccccCHHHHHHhhcCCcCCcccccCC
Q 008741 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASAT--VQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSS 431 (555)
Q Consensus 355 ~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~--~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c~~ 431 (555)
.....++.+|+.++..+..| ........ .|.|..|...|. .....+...|..-+..+.-- ..+.
T Consensus 223 ----------~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~-~~~~~~k~Gl~~~~~e~~~K--~s~~ 289 (473)
T KOG1872|consen 223 ----------CLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKCIIN-KTVHDMRFGLKSGLSEEIQK--ISSI 289 (473)
T ss_pred ----------chhHHHHHhhccccccceeeccCcccccccccccccccceEEe-eeechhhhhhhhhhhhhhhc--cCcc
Confidence 12235889999999999999 33333333 688888887775 34456666665544332221 1111
Q ss_pred CCCCcceeEEEEEEeccCCceEEEEEeeeEeC--CCCceeccceeeeCceeecCCccccC--------------------
Q 008741 432 TGNAGVVTAKKSVKIQTLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLVT-------------------- 489 (555)
Q Consensus 432 c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~--~~~~~Ki~~~V~fp~~Ldl~~~~~~~-------------------- 489 (555)
-+... ...+.+.|.+||.+|+|+..||.|. .....|+-+.|.||..||.-..|..+
T Consensus 290 lgr~a--~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~ 367 (473)
T KOG1872|consen 290 LGRPA--AYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKK 367 (473)
T ss_pred cCCCh--HHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCC
Confidence 12111 3446678999999999999999998 34456899999999999986555220
Q ss_pred ----------------------------CCCC-CccEEEEEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceeeCcc
Q 008741 490 ----------------------------PSAE-GRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTS 540 (555)
Q Consensus 490 ----------------------------~~~~-~~~Y~L~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~vs~~ 540 (555)
.... ...|.|.|||.|.|.+..+|||+|++|...+.|++|||+.|+-+..+
T Consensus 368 ~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e 447 (473)
T KOG1872|consen 368 EEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGE 447 (473)
T ss_pred chhhcccccCcCcccccccccchhccccccccccceeeeeEeeeccccccCCCcceEEEeccCCceeecccccccccccc
Confidence 0012 67899999999999999999999999999889999999999999998
Q ss_pred cccC-------CCcEEEEEE
Q 008741 541 KVLH-------DQAYVLFYK 553 (555)
Q Consensus 541 ~v~~-------~~aYlLfY~ 553 (555)
++.. ..||||+|+
T Consensus 448 ~i~~lsgggd~~~ayvllyk 467 (473)
T KOG1872|consen 448 TILSLSGGGDWHSAYVLLYK 467 (473)
T ss_pred ceeeecCCCccchhhheeec
Confidence 8864 499999997
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.90 E-value=6.7e-24 Score=209.56 Aligned_cols=287 Identities=21% Similarity=0.277 Sum_probs=220.6
Q ss_pred CCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCCC
Q 008741 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 279 (555)
Q Consensus 200 ~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v~ 279 (555)
+.+||.|+-++=|+|++||+|.+.+++|++++.... .......+...|..+++.+|.+.. ....++
T Consensus 133 G~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n--~~d~~~~lv~rl~~l~rklw~~r~------------fk~hvS 198 (442)
T KOG2026|consen 133 GFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN--YFDNLTELVQRLGELIRKLWNPRN------------FKGHVS 198 (442)
T ss_pred eeeccchhhhHHHHHHHHHHHhccchhhhhhccccc--ccchhHHHHHHHHHHHHHhcChhh------------hcccCC
Confidence 458999999999999999999999999999986421 123445788899999999998753 337899
Q ss_pred hHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCccc
Q 008741 280 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (555)
Q Consensus 280 p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (555)
|..+.+++....-. .|..+.|-|+-|||.|||+.||..+.....
T Consensus 199 phe~lqaV~~~s~k----~f~i~~q~DpveFlswllntlhs~l~~~k~-------------------------------- 242 (442)
T KOG2026|consen 199 PHEFLQAVMKLSKK----RFRIGQQSDPVEFLSWLLNTLHSDLRGSKK-------------------------------- 242 (442)
T ss_pred HHHHHHHHHHHhhh----heecCCCCCHHHHHHHHHHHHHHHhCCCCC--------------------------------
Confidence 99999988665432 246679999999999999999999854331
Q ss_pred ccccccCCcccccccccEEeEEEEe-c----CCccceeeecceeeeeeeccc------------cccCHHHHHHhhcCCc
Q 008741 360 TRTQSFLPSALSDIFGGQLKSVVKA-Q----GNKASATVQPFLLLHLDIYSE------------AVHTIEDALRLFSAPE 422 (555)
Q Consensus 360 ~~~~~~~~s~I~~lF~G~l~s~i~C-~----c~~~s~~~e~f~~LsL~I~~~------------~~~sLe~~L~~~~~~E 422 (555)
..++|+..|.|.+.....- . ........-||+.|+|++|+. +.+.|-++|..|....
T Consensus 243 ------~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t 316 (442)
T KOG2026|consen 243 ------ASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGET 316 (442)
T ss_pred ------chhHhhHhhcceEEeeeeccccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCce
Confidence 2257999999999875544 2 233455668999999999864 2457888888765433
Q ss_pred CCcccccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeC-ceeecCCccccC--CCCCCccEEE
Q 008741 423 NLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFP-LQLVLGRDLLVT--PSAEGRKYEL 499 (555)
Q Consensus 423 ~l~g~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp-~~Ldl~~~~~~~--~~~~~~~Y~L 499 (555)
.-+ +.. ...+ ++..+.++|++|++|++||..++....|..+-++|| ..+++.+..... ....-..|.|
T Consensus 317 ~~e-~~~-------~~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (442)
T KOG2026|consen 317 VTE-VVT-------PKLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSL 387 (442)
T ss_pred eee-ecc-------hhhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccc
Confidence 322 111 2223 678899999999999999999988889999999999 456665443221 2334489999
Q ss_pred EEEEEEeeCCCCCceEEEEEecC-CCcEEEEeCCCceeeCcccccCCCcEEEEEEE
Q 008741 500 VATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 554 (555)
Q Consensus 500 ~gvI~H~G~s~~sGHYva~vr~~-~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~R 554 (555)
.|-+.|. ...|||..++++. .++||..+|-.|++...+-+.-..+||-+|+|
T Consensus 388 ~~N~i~~---~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~ 440 (442)
T KOG2026|consen 388 VANAIHE---DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEK 440 (442)
T ss_pred hhhhhcC---cccCceEEEEEeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhc
Confidence 9999997 4679999999985 67899999999999988877777788877764
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.74 E-value=3.5e-17 Score=176.54 Aligned_cols=321 Identities=13% Similarity=0.126 Sum_probs=201.6
Q ss_pred CCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCC
Q 008741 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPF 278 (555)
Q Consensus 199 ~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v 278 (555)
....||.-.+-+-|.||+||.|+++|++|..+++ ..+....|++|+|..||.+|....+ ...
T Consensus 497 T~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~----H~C~~e~CL~CELGFLF~Ml~~S~G--------------~~C 558 (1118)
T KOG1275|consen 497 TTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLR----HICTKEFCLLCELGFLFTMLDSSTG--------------DPC 558 (1118)
T ss_pred ceeeccCCCCchHHHHHHHHHHHhccHHHHHHHc----CccchhHHHHHHHHHHHHHHhhhcC--------------Ccc
Confidence 3467999999999999999999999999999987 3566788999999999999975443 566
Q ss_pred ChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcc
Q 008741 279 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSA 358 (555)
Q Consensus 279 ~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (555)
....|.++++.....-.-. ..-.+.++.+-+. ++.+.+...+...... ..... -.............
T Consensus 559 qa~NFlraf~t~~~a~~LG--~vl~d~~~~~~~~--~~~liq~~~~~~~set---~~~~d------~~~~~~~~~s~~~~ 625 (1118)
T KOG1275|consen 559 QANNFLRAFRTNPEASALG--LVLSDTQISGTVN--DDVLIQDAEGFISSET---SRHLD------CQDCRGLQQSESVD 625 (1118)
T ss_pred chhHHHHHHhhChHhhhhc--ccccchhhccccc--hHHHhhhhhhccchhh---hhhhh------HHHhhhhhhhhccc
Confidence 6777777776654321100 0011211222110 0111111110000000 00000 00000000000000
Q ss_pred cccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeecccc-------ccCHHHHHHhhcCCcCCcccccC
Q 008741 359 VTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA-------VHTIEDALRLFSAPENLEGYRTS 430 (555)
Q Consensus 359 ~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~-------~~sLe~~L~~~~~~E~l~g~~c~ 430 (555)
-..........+.++|+-.......| .|+....+......+.|..|+.. ...+.+.|++...-+.-....|+
T Consensus 626 ~~~~~vn~~~~l~q~F~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~~~~C~ 705 (1118)
T KOG1275|consen 626 GESFKVNYAPVLQQSFCQEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNKQAWCE 705 (1118)
T ss_pred CceeeecchhHHHHHhhhHHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhcccccccccc
Confidence 00000112235889999999999999 88877777767777777776532 23466667664433333236788
Q ss_pred CCCCCcceeEEEEEEeccCCceEEEEEeeeEeC--CCC--ceeccceeeeCceeecCCccc-----------------cC
Q 008741 431 STGNAGVVTAKKSVKIQTLSKILILHLMRFSYG--SQG--STKLHKSVRFPLQLVLGRDLL-----------------VT 489 (555)
Q Consensus 431 ~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~--~~~--~~Ki~~~V~fp~~Ldl~~~~~-----------------~~ 489 (555)
.|.+.. ....+..+..+|.+|.|...-+... ..+ ..|.-..|-+|..+.+...-. ..
T Consensus 706 ~C~k~e--p~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~ 783 (1118)
T KOG1275|consen 706 TCTKPE--PTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDY 783 (1118)
T ss_pred cccCCC--CcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccc
Confidence 886544 6777788999999999987766543 111 235566777888766632110 00
Q ss_pred CCCCCccEEEEEEEEEeeCCCCCceEEEEEecC---------CCcEEEEeCCCceeeCcccccC-----CCcEEEEE
Q 008741 490 PSAEGRKYELVATVTHHGRDPSKGHYTADARYF---------NDQWLHFDDASVTAIGTSKVLH-----DQAYVLFY 552 (555)
Q Consensus 490 ~~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~---------~~~W~~fnDs~V~~vs~~~v~~-----~~aYlLfY 552 (555)
+......|+|.|+|+|.|...+.+|+|++|+.. +.+||.|||..|.+++++|++. ..|.||+|
T Consensus 784 d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 784 DEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred cCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 123458999999999999988999999999852 3589999999999999999875 58999999
No 40
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=99.10 E-value=3.7e-11 Score=123.29 Aligned_cols=130 Identities=12% Similarity=0.069 Sum_probs=75.1
Q ss_pred CCCCCCCCCCCcccC-------CcccccCCCCCcccccccccccccc----ccccccccCC------CCCCCCcccceec
Q 008741 97 SNDHDLGAVGCPKEN-------GHIKNSTNGPALSNGVNHLKADGID----FSSFHQNAGG------HANPSPISKFHVL 159 (555)
Q Consensus 97 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~ 159 (555)
...+.+|+.++|+-. |+|+|||+++.+.+.+.++++|..+ ..+..+.+.+ --++..+.....+
T Consensus 233 ~~~L~IGslveV~np~~~~~~ygvVrWIG~pP~~~~Vl~gve~edet~~~~~~~~dgs~~g~Rlftc~d~~a~Fv~~~sc 312 (724)
T KOG3556|consen 233 ILNLKIGSLVEVENPETMRRVYGVVRWIGEPPEASGVLYGVEFEDETSQWPSSNQDGSSSGDRLFTCFDTNANFVMSGSC 312 (724)
T ss_pred cccceecceEEecCCccccccceeeEecccCCcccCceEeeeecCccccCccccccCcccCceeeeeccccceeeEcCCC
Confidence 455788888888732 9999999999999999999999987 4444444433 1233344444444
Q ss_pred cCC-CccCCC--cc--------cccccCCCCCCccCCcccCCCCccc---ccCC--CCcccccCCCchhHHHHHHHHhCC
Q 008741 160 CDG-NIDGRD--QN--------AAACNSSISGSKEVPMKAINEPVKS---VKDL--LPRGLINSGNLCFLNATLQALMSC 223 (555)
Q Consensus 160 ~~~-~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~GL~NlGNTCYlNSvLQ~L~~~ 223 (555)
..+ +|.... ++ ...+.-+.+...+... |.+..++ ..++ ...|++-.-|.||+||.|-+++.-
T Consensus 313 s~d~rfa~l~~sp~~n~~~~~~~~~fg~yd~~~V~~s~--pp~q~~~a~~la~~~gk~kgiqgh~nscyldstlf~~f~f 390 (724)
T KOG3556|consen 313 SVDPRFARLYYSPNQNHMPMKGGGVFGLYDNRLVQYSG--PPEQYRSAPKLAPREGKIKGIQGHPNSCYLDSTLFKPFEF 390 (724)
T ss_pred CcCcccchhccCchhccccccCCceeeeccchhhhcCC--CHHHhhcCCcccchhcccccccCCcchhhccccccccccc
Confidence 444 444432 11 1111111111111111 1111111 1111 337899999999999999999875
Q ss_pred hHHHH
Q 008741 224 SPFVQ 228 (555)
Q Consensus 224 p~fr~ 228 (555)
....+
T Consensus 391 ~sv~d 395 (724)
T KOG3556|consen 391 DSVTD 395 (724)
T ss_pred ccccc
Confidence 44333
No 41
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.4e-10 Score=116.26 Aligned_cols=376 Identities=21% Similarity=0.144 Sum_probs=224.9
Q ss_pred CCCceEEEEeccchhhhhhhhcccCCCCCCCCCCccccCCccccccceecceeeeeeecccCCCCCCCCCccCCCceeec
Q 008741 1 MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQ 80 (555)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (555)
|+.+++++||+|+|.+||+++.+.+ -. .|.-+-+--.-+++|+|+...+.+......++- + .+++.+. +
T Consensus 1 ~~~~~~~~~~~~~e~~t~s~~~p~~-i~-------Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i-~-~~~~~~~-~ 69 (420)
T KOG1871|consen 1 MSEKKVFVIGSFLENETRSFFEPVP-ID-------PRGSINKCNICFMNSILQALLYCSPFYNLLELI-K-RADGTVK-E 69 (420)
T ss_pred CCccchhhhhHhhhcccccccCccc-cC-------CccccccceeEeeHHHHHHHHhCccHHHHHHhh-h-hhcCcee-c
Confidence 7889999999999999999997766 22 122233444778999999999888776655552 2 5555555 3
Q ss_pred ----cCcccCCccccc----ccCCCCCCCCCCCCCcccCCcccccCCCCCccccccccccccccccccccccCCCCCCCC
Q 008741 81 ----PSTLLKKDDKVK----SVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSP 152 (555)
Q Consensus 81 ----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (555)
..++.++....+ .....+.+.+..|.++.+ +.++. .+..++. .++++.+-+...--...+.-..+.
T Consensus 70 ~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~~~---~ses~--~~d~~~d-av~~d~~~~~l~t~~~~e~~~~g~ 143 (420)
T KOG1871|consen 70 GSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHVVE---KSESN--KSDLQGD-AVKPDPIYLDLLTMSRFESLQVGK 143 (420)
T ss_pred ccchhHHHHHHHHhhccccchhhhhhhccCCccccccc---hhhhh--hhcccCc-cccCCchhhhcccCCchhhccccc
Confidence 223344444444 344578888888887772 33333 3777888 566655333222221111111111
Q ss_pred cc--cceeccCCCccCCCcccccccCCCCCCccCCcccCCCCcccccCCCCcccccCCCchhHHHHHHHHhCChHHHHHH
Q 008741 153 IS--KFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLL 230 (555)
Q Consensus 153 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L 230 (555)
+. ........++- .++....++....+.+...|+|+.|.||-|+++|..|.+.++.++...+
T Consensus 144 qedAeefl~~~ld~l----------------hee~~~v~~~~~~~n~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~ 207 (420)
T KOG1871|consen 144 QEDAEEFLLDNLDFL----------------HEESSEVPTELVPPNDEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLL 207 (420)
T ss_pred cccHHHHHHHHHhhh----------------hHHHHhhhhhhcCCcccccccccccccccccccchhhcccccCchhhhc
Confidence 10 01111111111 1112234555556667778999999999999999999999999999988
Q ss_pred HhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCCChHHHHHH----------HHhcCCCCCCCC--
Q 008741 231 QELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAV----------LKNFTPDVPNSI-- 298 (555)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~----------l~~~~p~~~~~~-- 298 (555)
-......+++........+.++|.....+.-.... ........++.|.+|.-. +..+.+......
T Consensus 208 gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~---nkeS~tlqPF~tlqldiq~~~i~sv~~ales~~~re~lp~~s 284 (420)
T KOG1871|consen 208 GKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS---NKESATLQPFFTLQLDIQSEKIHSVQDALESLVARESLPGYS 284 (420)
T ss_pred CCcccCccCCCCCcccCcHHHhhccccccceeccc---cccccccCccceeeeeeeccccCCHHHHhhccChhhccccee
Confidence 77776677766666666667776644322211111 111134455555555432 333222211111
Q ss_pred ------CCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcccccccccCCccccc
Q 008741 299 ------SGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSD 372 (555)
Q Consensus 299 ------~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~ 372 (555)
.....|.++++|...|+..|+..+.+..+.-. .....|+.....+....... ..+++=+ .
T Consensus 285 t~s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~------------k~~K~i~~~~~l~i~~~~~s-~gvk~~~-~ 350 (420)
T KOG1871|consen 285 TKSGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGAR------------KLGKKIEYPWTLKISKNCFS-QGLKIRI-L 350 (420)
T ss_pred cCCCCeechhhhhhHhhcchhhhhhhhHHHHHhccchh------------hhchhhhccceeeechhhhc-cccchhh-h
Confidence 12246999999999999999999766432111 11223333333333332332 2233223 6
Q ss_pred ccccEEeEEEEecCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcc
Q 008741 373 IFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG 426 (555)
Q Consensus 373 lF~G~l~s~i~C~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g 426 (555)
+|++++.+...-..+.++.+..++......+...+...++|++-.+...+.+.+
T Consensus 351 ~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~ 404 (420)
T KOG1871|consen 351 IATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEK 404 (420)
T ss_pred ccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhcc
Confidence 788888887766666678888888888888877777888888887777777664
No 42
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.50 E-value=1.2e-06 Score=84.05 Aligned_cols=129 Identities=12% Similarity=0.188 Sum_probs=77.5
Q ss_pred ccccccccEEeEEEEe-cCCccceee-ecceeeeeeeccccccCHHHHHHhhcCCcCCcccccCCCCCCcceeEEEEEEe
Q 008741 369 ALSDIFGGQLKSVVKA-QGNKASATV-QPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKI 446 (555)
Q Consensus 369 ~I~~lF~G~l~s~i~C-~c~~~s~~~-e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c~~c~~~~~~~a~k~~~i 446 (555)
.|.++|.-.+.=...| .|++..... .. ...|+-..+..|--..-.--..|..|+. ....+++.+
T Consensus 122 ~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K-----------~L~TFtnv~pdwhPLnA~h~~pCn~C~~---ksQ~rkMvl 187 (275)
T PF15499_consen 122 WIEKLFLYSFSWEFECSQCGHKYQNRCTK-----------TLVTFTNVIPDWHPLNAVHFGPCNSCNS---KSQRRKMVL 187 (275)
T ss_pred HHHhHhheeeEEEEEccccCChhhhhhee-----------eecccCCCCCCCCcccccccCCCcccCC---hHHhHhhhh
Confidence 3789999999999999 676532221 11 0011111111111000000134666643 346677889
Q ss_pred ccCCceEEEEEeeeEeCCCCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEeeCCCCCceEEEEEecCCCcE
Q 008741 447 QTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQW 526 (555)
Q Consensus 447 ~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~~~~W 526 (555)
.+.|+|+++|+. . +-..+ |+..|.. .-.+..|++-+||.+.-. --|+++++++.+|.|
T Consensus 188 ekv~~vfmLHFV---e--GLP~n-----------dl~~ysF---~feg~~Y~Vt~VIQY~~~---~~HFvtWi~~~dGsW 245 (275)
T PF15499_consen 188 EKVPPVFMLHFV---E--GLPHN-----------DLQHYSF---HFEGCLYQVTSVIQYQAN---LNHFVTWIRDSDGSW 245 (275)
T ss_pred hcCchhhhhhhh---c--cCCcc-----------CCCccce---eecCeeEEEEEEEEEecc---CceeEEEEEcCCCCe
Confidence 999999999953 1 11111 2222211 124689999999999764 349999999999999
Q ss_pred EEEeCCC
Q 008741 527 LHFDDAS 533 (555)
Q Consensus 527 ~~fnDs~ 533 (555)
..|||-+
T Consensus 246 LecDDLk 252 (275)
T PF15499_consen 246 LECDDLK 252 (275)
T ss_pred EeeccCC
Confidence 9999965
No 43
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0033 Score=69.35 Aligned_cols=31 Identities=55% Similarity=1.018 Sum_probs=28.8
Q ss_pred cccCCCchhHHHHHHHHhCChHHHHHHHhhh
Q 008741 204 LINSGNLCFLNATLQALMSCSPFVQLLQELR 234 (555)
Q Consensus 204 L~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~ 234 (555)
|.|.||+||.|++||+|..+|+|+-.+..++
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~ 64 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLP 64 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHH
Confidence 9999999999999999999999998876654
No 44
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.00093 Score=73.95 Aligned_cols=221 Identities=14% Similarity=0.149 Sum_probs=126.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcccccccccCCcccccccccEEeEEE
Q 008741 303 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382 (555)
Q Consensus 303 ~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i 382 (555)
...++.++|..++..|++....... ..-+.....+.|.+++..... ++++++|+.+.....
T Consensus 548 ~~~~~S~lL~~ll~~l~~~~~~ss~---------~~~v~~aile~~~~Wk~~er~----------~l~~~lf~l~~~e~~ 608 (806)
T KOG1887|consen 548 HEGVYSELLSDLLLSLEEVHNASSS---------AADVVVAILEFWQCWKNPERE----------SLVNRLFTLEEKERM 608 (806)
T ss_pred hhhhHHHHHHHHHhhhHHHhhhcch---------hhHHHHHHHhcccccccHHHH----------HHHHhhhhhhhhhhc
Confidence 4567888999999999988643311 001122334556666555554 458899999998888
Q ss_pred Ee-cCCccceeeecceeeeeeeccc---------cccCHHHHHHhhcCCcCCcccccCCCC-CCcceeEEEEEEeccCCc
Q 008741 383 KA-QGNKASATVQPFLLLHLDIYSE---------AVHTIEDALRLFSAPENLEGYRTSSTG-NAGVVTAKKSVKIQTLSK 451 (555)
Q Consensus 383 ~C-~c~~~s~~~e~f~~LsL~I~~~---------~~~sLe~~L~~~~~~E~l~g~~c~~c~-~~~~~~a~k~~~i~~lP~ 451 (555)
.| .|.....-. ....+.+.+..+ +..++++.|+. .+-+.. ..|+.-. .|++ .......|...|+
T Consensus 609 Sc~~cr~~~n~p-eqsS~~~~~~a~slr~~k~a~~n~~f~~ilk~-i~m~~~--m~cD~~~gGCgk-~n~v~h~is~~P~ 683 (806)
T KOG1887|consen 609 SCSKCRRDLNYP-EQSSYGIVIAADSLRQLKCAFQNITFEDILKN-IRMNDK--MLCDKETGGCGK-ANLVHHILSPCPP 683 (806)
T ss_pred cccccccCCCCc-chhhhhhhccchhhhhHHHHhhhhhHHHHHHH-hhhhhh--hcccccCCCCcc-hhhhhhhcCCCCC
Confidence 89 565422222 111111222211 23566666665 222221 2343211 1111 2233355788999
Q ss_pred eEEEEEeeeEeCCCCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEeeCCCCCceEEEEEecCCCcEE--EE
Q 008741 452 ILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWL--HF 529 (555)
Q Consensus 452 vLiI~L~Rf~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~~~~W~--~f 529 (555)
|.+|.|.+-..... ..--.+...+..++|++.... ....+..+|+|+++|.-+.. .++|.|+++. .++|. ..
T Consensus 684 vftIvlewEk~ETe-~eI~~T~~aL~teidis~~y~-~g~ep~t~yrLVSmv~~~e~---~~~~~C~Aye-~Nrwvs~r~ 757 (806)
T KOG1887|consen 684 VFTIVLEWEKSETE-KEISETTKALATEIDISRLYR-EGLEPNTKYRLVSMVGNHEE---GEEYICFAYE-PNRWVSLRH 757 (806)
T ss_pred eeEeeeehhcccch-HHHHHHHHHHHhhhhHHHHhh-hccCcCceeEEEEEeeeccc---cceEEEeecc-CCcchhhHH
Confidence 99996643221111 111112223445566664332 45577899999999997642 5699999998 55687 99
Q ss_pred eCCCceee-CcccccC------CCcEEEEEE
Q 008741 530 DDASVTAI-GTSKVLH------DQAYVLFYK 553 (555)
Q Consensus 530 nDs~V~~v-s~~~v~~------~~aYlLfY~ 553 (555)
+|..+..+ +|.+|.. -.+-+|||+
T Consensus 758 ~~~~~e~iG~w~dvvr~c~e~~vrpeil~ye 788 (806)
T KOG1887|consen 758 EDSQGEVVGDWKDVVRFCGERKVRPEILFYE 788 (806)
T ss_pred HHHHhhhccchHHHHHHHhcccccHHHHHHH
Confidence 99888777 4555542 246666665
No 45
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=95.12 E-value=0.34 Score=49.57 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=12.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHH
Q 008741 300 GRPRQEDAQEFLSFIMDQMHD 320 (555)
Q Consensus 300 ~~~~QqDA~EfL~~LLd~L~~ 320 (555)
..++-.||+++|..|+..+..
T Consensus 159 ~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 159 KKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp -TTS---HHHHHHHHHTTB-T
T ss_pred CCCCCcCHHHHHHHHHHhccc
Confidence 446889999999999876653
No 46
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=91.84 E-value=0.095 Score=48.28 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=21.8
Q ss_pred CCceEEEEEecCCCcEEEEeCCCceeeCc
Q 008741 511 SKGHYTADARYFNDQWLHFDDASVTAIGT 539 (555)
Q Consensus 511 ~sGHYva~vr~~~~~W~~fnDs~V~~vs~ 539 (555)
..||.+.+.+..+| ||.+||+.+.+.++
T Consensus 137 g~~Havfa~~ts~g-Wy~iDDe~~y~~tP 164 (193)
T PF05408_consen 137 GQEHAVFACVTSDG-WYAIDDEDFYPWTP 164 (193)
T ss_dssp STTEEEEEEEETTC-EEEEETTEEEE---
T ss_pred CCcceEEEEEeeCc-EEEecCCeeeeCCC
Confidence 34799999998666 99999999988865
No 47
>PF12478 DUF3697: Ubiquitin-associated protein 2 ; InterPro: IPR022166 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00627 from PFAM. There are two conserved sequence motifs: AVEMPG and QFG.
Probab=85.48 E-value=0.29 Score=31.57 Aligned_cols=16 Identities=44% Similarity=0.929 Sum_probs=12.7
Q ss_pred cccccceecceeeeee
Q 008741 42 AEDKELQFGSLNFGTE 57 (555)
Q Consensus 42 ~~~~~~~~~~~~~~~~ 57 (555)
..--.+|||.|+||++
T Consensus 18 i~~LdvQFGal~fGse 33 (33)
T PF12478_consen 18 ISSLDVQFGALDFGSE 33 (33)
T ss_pred cCceeEEeccccccCC
Confidence 3446799999999985
No 48
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=80.47 E-value=3.2 Score=38.51 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=15.0
Q ss_pred cccccCCCchhHHHHHHHHhC
Q 008741 202 RGLINSGNLCFLNATLQALMS 222 (555)
Q Consensus 202 ~GL~NlGNTCYlNSvLQ~L~~ 222 (555)
+|+.|.+|+||+||++|++..
T Consensus 34 t~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 34 TGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp E----SSSTHHHHHHHHHHHH
T ss_pred ecCCCCCCChHHHHHHHHHHH
Confidence 599999999999999998753
No 49
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=77.59 E-value=3.5 Score=45.05 Aligned_cols=79 Identities=18% Similarity=0.155 Sum_probs=53.3
Q ss_pred ceEEEEEeeeEeC---------CCCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEe-eCCC----------
Q 008741 451 KILILHLMRFSYG---------SQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHH-GRDP---------- 510 (555)
Q Consensus 451 ~vLiI~L~Rf~~~---------~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~-G~s~---------- 510 (555)
.+|++.+.|-... +.+..-.+.++++..++.+. +..|+|.+.|||. |+..
T Consensus 479 GvLIfyVeRRq~k~~~~Gec~tg~rs~ind~pidv~q~i~in----------gimyrL~SAVCYK~~d~~~d~C~~~dif 548 (666)
T PF03292_consen 479 GVLIFYVERRQNKNTFSGECYTGFRSRINDSPIDVSQEITIN----------GIMYRLKSAVCYKIGDQFFDGCNGNDIF 548 (666)
T ss_pred ceEEEEEeehhccceeccccccchhhhhcCcccccccceeec----------ceeeeeehhheeeccccccCCCCCCcce
Confidence 7899999987542 22344556666776666666 6789999999996 3322
Q ss_pred CCceEEEEEecCCCcEEEEeCCCceeeCccc
Q 008741 511 SKGHYTADARYFNDQWLHFDDASVTAIGTSK 541 (555)
Q Consensus 511 ~sGHYva~vr~~~~~W~~fnDs~V~~vs~~~ 541 (555)
-.||| +.++...| ||.+|-..+-..+.++
T Consensus 549 lkG~y-tIlfTe~G-pw~YDP~s~~s~~sr~ 577 (666)
T PF03292_consen 549 LKGYY-TILFTEMG-PWMYDPLSIFSKNSRE 577 (666)
T ss_pred eceeE-EEEEecCC-ceeeCchhhcCcchhH
Confidence 13888 56777577 8888876665544433
No 50
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=49.86 E-value=20 Score=32.83 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=25.9
Q ss_pred EEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceee
Q 008741 500 VATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAI 537 (555)
Q Consensus 500 ~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~v 537 (555)
.|+||+.+. |++|..|- +++||-+|=..-.+.
T Consensus 100 ~gfI~N~~~-----HWf~iRki-~~~wyNLDS~l~~P~ 131 (157)
T PF02099_consen 100 FGFICNLSR-----HWFAIRKI-GGQWYNLDSKLKEPE 131 (157)
T ss_dssp SEEEEECTT-----EEEEEEEE-TTEEEEECTTTSS-E
T ss_pred eEEEeccCc-----ceEEEEee-CCeeEeccCCCCCCc
Confidence 689999776 99999998 889999997665443
No 51
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=41.12 E-value=24 Score=26.86 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=27.4
Q ss_pred cccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeC
Q 008741 427 YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG 463 (555)
Q Consensus 427 ~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~ 463 (555)
+.|++|++.....-.....=..+.+++=||.++|...
T Consensus 5 ~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~i 41 (68)
T COG3478 5 FKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIVI 41 (68)
T ss_pred ccCCCcCCcchhhceeeccCCCcceeEEecccEEEEE
Confidence 4599999877655554444457889999999999753
No 52
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=35.78 E-value=38 Score=18.98 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=10.9
Q ss_pred EEecCCCcEEEEeCCC
Q 008741 518 DARYFNDQWLHFDDAS 533 (555)
Q Consensus 518 ~vr~~~~~W~~fnDs~ 533 (555)
+++. ++.||.|+++-
T Consensus 3 W~~~-~~~wYy~~~~G 17 (19)
T PF01473_consen 3 WVQD-NGNWYYFDSDG 17 (19)
T ss_dssp EEEE-TTEEEEETTTS
T ss_pred CEEE-CCEEEEeCCCc
Confidence 4555 67899998763
No 53
>PF10748 DUF2531: Protein of unknown function (DUF2531); InterPro: IPR019684 This entry represents proteins with unknown function and appears to be restricted to Enterobacteriaceae.
Probab=28.64 E-value=68 Score=28.44 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=28.1
Q ss_pred CccEEEEEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCc
Q 008741 494 GRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASV 534 (555)
Q Consensus 494 ~~~Y~L~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V 534 (555)
-..++|.|||- .+++|++++++++++|.+.-...+
T Consensus 33 Ls~WrlqGiVg------~~~~~~gwl~~p~g~W~Rv~~g~~ 67 (132)
T PF10748_consen 33 LSQWRLQGIVG------QGDRWIGWLQDPQGKWLRVRQGQV 67 (132)
T ss_pred cccceEccEEC------CCCcEEEEEECCCCCeEEeccCCC
Confidence 45899999985 456999999999999998755443
No 54
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=23.10 E-value=71 Score=24.55 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=17.1
Q ss_pred cccCCCCCCcceeEEEEEEeccCCceEEEEEeeeE
Q 008741 427 YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFS 461 (555)
Q Consensus 427 ~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~ 461 (555)
|.|++|++........+..=..+-.++=|+.+||.
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~ 35 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFT 35 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEE
Confidence 56888987553333322222233344444444444
No 55
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=21.52 E-value=13 Score=36.23 Aligned_cols=28 Identities=14% Similarity=0.402 Sum_probs=22.8
Q ss_pred EEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCC
Q 008741 500 VATVTHHGRDPSKGHYTADARYFNDQWLHFDDAS 533 (555)
Q Consensus 500 ~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~ 533 (555)
.|+|||.-. ||++..|- +++||-+|--.
T Consensus 104 rafICnl~e-----HWF~iRKf-g~qWfnlnSll 131 (315)
T KOG2935|consen 104 RAFICNLKE-----HWFTIRKF-GKQWFNLNSLL 131 (315)
T ss_pred hhhhhcchh-----hhhhHhhh-cchhccchhhh
Confidence 578999887 99987776 78899998643
Done!