Query 008741
Match_columns 555
No_of_seqs 274 out of 1285
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 10:39:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 3.9E-62 1.3E-66 511.3 29.9 322 200-555 7-358 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 2.8E-61 9.7E-66 509.4 24.8 324 198-555 59-395 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 6.5E-60 2.2E-64 489.8 29.9 325 197-555 5-342 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 1.4E-59 4.9E-64 488.6 25.6 321 200-555 2-350 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 4.8E-59 1.6E-63 485.2 25.8 293 198-555 3-314 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 1.3E-58 4.4E-63 490.5 19.6 318 198-555 11-393 (404)
7 1vjv_A Ubiquitin carboxyl-term 100.0 3.7E-57 1.3E-61 481.2 24.7 300 193-555 16-413 (415)
8 2f1z_A Ubiquitin carboxyl-term 100.0 2.3E-56 7.8E-61 488.2 26.4 337 154-555 118-483 (522)
9 3mhs_A Ubiquitin carboxyl-term 100.0 1.5E-55 5.3E-60 476.8 29.0 316 198-554 138-472 (476)
10 3ihp_A Ubiquitin carboxyl-term 100.0 6.2E-54 2.1E-58 489.0 30.0 307 197-555 340-852 (854)
11 2vhf_A Ubiquitin carboxyl-term 100.0 3.1E-30 1.1E-34 260.3 9.3 229 200-532 8-309 (374)
12 3mp2_A Non-structural protein 96.8 0.021 7E-07 53.2 13.2 34 501-538 162-195 (211)
13 2fe8_A PP1AB, ORF1AB, replicas 95.7 0.49 1.7E-05 46.8 17.4 37 500-539 260-296 (315)
14 1qmy_A Protease, leader protea 76.6 1.1 3.9E-05 38.3 2.1 35 500-539 110-144 (167)
15 3o65_A Putative ataxin-3-like 40.8 20 0.00069 32.6 3.6 33 499-537 110-142 (191)
16 1qmy_A Protease, leader protea 35.8 48 0.0016 28.4 4.8 21 201-221 13-33 (167)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.9e-62 Score=511.25 Aligned_cols=322 Identities=29% Similarity=0.475 Sum_probs=267.0
Q ss_pred CCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhcc-CC-----CCCCCcHHHHHHHHHHHhcCCCCCCCccccccccC
Q 008741 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-DI-----PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLD 273 (555)
Q Consensus 200 ~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~-~~-----~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~ 273 (555)
+.+||.|+||||||||+||||+++|+|+++++..... .. .....++.++|+.|+..||...
T Consensus 7 g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~------------- 73 (367)
T 2y6e_A 7 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR------------- 73 (367)
T ss_dssp TCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS-------------
T ss_pred CCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCC-------------
Confidence 5799999999999999999999999999999864311 11 1234578999999999998543
Q ss_pred CCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccC-CCCccccccchhhhhhhhhC
Q 008741 274 IGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSI-NGANTALVSLAEEDEWETVG 352 (555)
Q Consensus 274 ~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 352 (555)
...++|..|...++...+.| .++.||||||||.+|||.||+++.+....+... ...........+.+.|..+.
T Consensus 74 -~~~i~P~~~~~~l~~~~~~f-----~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~ 147 (367)
T 2y6e_A 74 -DAHVAPRMFKTQVGRFAPQF-----SGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHR 147 (367)
T ss_dssp -CSEECCHHHHHHHHHHCGGG-----CSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHH
T ss_pred -CCCcCHHHHHHHHHHhhhhc-----CCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHH
Confidence 26799999999999998887 788999999999999999999986654432211 11111122234456676654
Q ss_pred CCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccc-----------------cccCHHHH
Q 008741 353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE-----------------AVHTIEDA 414 (555)
Q Consensus 353 ~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~-----------------~~~sLe~~ 414 (555)
..+. ++|.++|+|++.+.++| .|++.+.+.|+|++|+|+||.. ...+|++|
T Consensus 148 ~~~~-----------s~i~~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~ 216 (367)
T 2y6e_A 148 LRND-----------SVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDC 216 (367)
T ss_dssp HHCC-----------SHHHHHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHH
T ss_pred HhcC-----------CccccccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHH
Confidence 3332 46999999999999999 8999999999999999999853 24699999
Q ss_pred HHhhcCCcCCcc---cccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCc-eeecCCccccCC
Q 008741 415 LRLFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTP 490 (555)
Q Consensus 415 L~~~~~~E~l~g---~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~ 490 (555)
|+.|+.+|.+++ +.|+.| +..+.+.|+..|.++|+||+|||+||.++.....|+.+.|.||. .|||.+|+...
T Consensus 217 L~~f~~~E~l~~~~~~~C~~C--~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~- 293 (367)
T 2y6e_A 217 IELFTTMETLGEHDPWYCPNC--KKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNL- 293 (367)
T ss_dssp HHHHTSCEECCC-CCEEETTT--TEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCS-
T ss_pred HHHhcccccCCCCCCccCCCC--CCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCC-
Confidence 999999999987 567766 45678999999999999999999999999777899999999997 69999998643
Q ss_pred CCCCccEEEEEEEEEeeCCCCCceEEEEEecC-CCcEEEEeCCCceeeCcccccCCCcEEEEEEEC
Q 008741 491 SAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 555 (555)
Q Consensus 491 ~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~-~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~RV 555 (555)
......|+|+|||+|.|. .++|||+||+|.. +++||+|||+.|+++++++|....||||||+|.
T Consensus 294 ~~~~~~Y~L~avv~H~G~-~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~ 358 (367)
T 2y6e_A 294 SARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRR 358 (367)
T ss_dssp SSCCCEEEEEEEEEEECS-SSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEEC
T ss_pred CCCCceEEEEEEeecCCC-CCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEc
Confidence 234679999999999998 8999999999996 789999999999999999999999999999985
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=2.8e-61 Score=509.40 Aligned_cols=324 Identities=30% Similarity=0.450 Sum_probs=266.0
Q ss_pred CCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhc------cCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccc
Q 008741 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT------RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISV 271 (555)
Q Consensus 198 ~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~------~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~ 271 (555)
..+.+||.|+||||||||+||||+++|+|+++++.... ........++.+++..|+..+|...
T Consensus 59 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~----------- 127 (396)
T 2gfo_A 59 GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ----------- 127 (396)
T ss_dssp STTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC-----------
T ss_pred CCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCC-----------
Confidence 34579999999999999999999999999999975321 1111234578889999999988543
Q ss_pred cCCCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccC-CCCccccccchhhhhhhh
Q 008741 272 LDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSI-NGANTALVSLAEEDEWET 350 (555)
Q Consensus 272 ~~~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 350 (555)
...++|..|...++...+.| .++.||||||||.+|||.|++++.+........ ...........++..|..
T Consensus 128 ---~~~i~P~~f~~~l~~~~~~f-----~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~ 199 (396)
T 2gfo_A 128 ---YRYISPKDFKITIGKINDQF-----AGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQK 199 (396)
T ss_dssp ---EEEECCHHHHHHHHHHCGGG-----SSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHH
T ss_pred ---CceECHHHHHHHHHHhchhh-----cCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHH
Confidence 15689999999999998876 788999999999999999999986553321110 011111112344556766
Q ss_pred hCCCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcc---
Q 008741 351 VGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG--- 426 (555)
Q Consensus 351 ~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g--- 426 (555)
+...+ .++|.++|+|++.+.++| .|++.+.+.|+|++|+|+||.....+|++||+.|+.+|.++|
T Consensus 200 ~~~~~-----------~s~I~~lF~G~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~ 268 (396)
T 2gfo_A 200 HKQLN-----------ESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNR 268 (396)
T ss_dssp HHHHC-----------CSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTC
T ss_pred hhhcc-----------CCccchhhCcEEEEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcc
Confidence 54332 346999999999999999 899999999999999999997777899999999999999988
Q ss_pred cccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCc-eeecCCccccCCCCCCccEEEEEEEEE
Q 008741 427 YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSAEGRKYELVATVTH 505 (555)
Q Consensus 427 ~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~~~~~Y~L~gvI~H 505 (555)
+.|+.| +..+.+.++..|.++|+||+|||+||.++.....|+...|.||. .|||.+|+... ......|+|+|||+|
T Consensus 269 ~~C~~C--~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~-~~~~~~Y~L~avv~H 345 (396)
T 2gfo_A 269 FYCSHC--RARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGP-KNNLKKYNLFSVSNH 345 (396)
T ss_dssp EEETTT--TEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSC-CSSCCCBEEEEEEEE
T ss_pred cccCCc--ccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccCC-CCCCceEEEEEEEEe
Confidence 566666 45668999999999999999999999999777889999999996 69999987542 234678999999999
Q ss_pred eeCCCCCceEEEEEecC-CCcEEEEeCCCceeeCcccccCCCcEEEEEEEC
Q 008741 506 HGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 555 (555)
Q Consensus 506 ~G~s~~sGHYva~vr~~-~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~RV 555 (555)
.| ++++|||+||||.. +++||+|||+.|+++++++|...+||||||+|+
T Consensus 346 ~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~ 395 (396)
T 2gfo_A 346 YG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSL 395 (396)
T ss_dssp ES-CTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC
T ss_pred cC-CCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEc
Confidence 99 49999999999986 689999999999999999999999999999986
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=6.5e-60 Score=489.82 Aligned_cols=325 Identities=31% Similarity=0.446 Sum_probs=267.2
Q ss_pred cCCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhc-cCC---CCCCCcHHHHHHHHHHHhcCCCCCCCcccccccc
Q 008741 197 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT-RDI---PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272 (555)
Q Consensus 197 ~~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~-~~~---~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~ 272 (555)
...+.+||.|+||||||||+||+|+++|+||++++.... ... .....++.++|..|+..++...
T Consensus 5 ~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~------------ 72 (348)
T 3nhe_A 5 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSS------------ 72 (348)
T ss_dssp -CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCC------------
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCC------------
Confidence 344679999999999999999999999999999886422 111 1245678999999999998422
Q ss_pred CCCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCC-ccccccchhhhhhhhh
Q 008741 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGA-NTALVSLAEEDEWETV 351 (555)
Q Consensus 273 ~~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 351 (555)
....++|..|...++...+.| .++.||||||||.+|||.|++++.+....+...... ............|...
T Consensus 73 -~~~~~~p~~~~~~l~~~~~~f-----~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (348)
T 3nhe_A 73 -PNDVVSPSEFKTQIQRYAPRF-----VGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKY 146 (348)
T ss_dssp -TTCEECCHHHHHHHHHHSGGG-----SSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHH
T ss_pred -CCCccCHHHHHHHHHHhhhhh-----CCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHH
Confidence 237899999999999998876 778999999999999999999987654433221111 1111122334556555
Q ss_pred CCCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeecccc--ccCHHHHHHhhcCCcCCccc-
Q 008741 352 GPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA--VHTIEDALRLFSAPENLEGY- 427 (555)
Q Consensus 352 ~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~--~~sLe~~L~~~~~~E~l~g~- 427 (555)
...+ .++|.++|+|++.+.++| .|++.+.+.++|++|+|+|+... ..+|+++|+.|+.+|.++|.
T Consensus 147 ~~~~-----------~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~ 215 (348)
T 3nhe_A 147 LERE-----------DSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDE 215 (348)
T ss_dssp HTTC-----------CCHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGG
T ss_pred Hhhc-----------CCccccccceEEEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCC
Confidence 4433 346999999999999999 89999999999999999998643 46999999999999999984
Q ss_pred --ccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCc-eeecCCccccCCCCCCccEEEEEEEE
Q 008741 428 --RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSAEGRKYELVATVT 504 (555)
Q Consensus 428 --~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~~~~~Y~L~gvI~ 504 (555)
.|+.| +..+.+.++..|.++|+||+|||+||.++.....|+...|.||. .|||.+|+.. ......|+|+|||+
T Consensus 216 ~~~C~~C--~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~--~~~~~~Y~L~avv~ 291 (348)
T 3nhe_A 216 KPTCCRC--RGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASE--NTNHAVYNLYAVSN 291 (348)
T ss_dssp CCEETTT--TEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCT--TCCCCEEEEEEEEE
T ss_pred ceECCCC--CCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCC--CCCCCcEEEEEEEE
Confidence 55555 45668999999999999999999999998777899999999995 6999998743 34567899999999
Q ss_pred EeeCCCCCceEEEEEecC-CCcEEEEeCCCceeeCcccccCCCcEEEEEEEC
Q 008741 505 HHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 555 (555)
Q Consensus 505 H~G~s~~sGHYva~vr~~-~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~RV 555 (555)
|.|+ ..+|||+||+|.+ +++||+|||+.|++++.++|...+||||||+|+
T Consensus 292 H~G~-~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~ 342 (348)
T 3nhe_A 292 HSGT-TMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELA 342 (348)
T ss_dssp EEEC-SSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEEC
T ss_pred ccCC-CCCcccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEec
Confidence 9996 8999999999985 788999999999999999999999999999995
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.4e-59 Score=488.56 Aligned_cols=321 Identities=30% Similarity=0.419 Sum_probs=254.8
Q ss_pred CCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhc---cCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCC
Q 008741 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT---RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGR 276 (555)
Q Consensus 200 ~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~---~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 276 (555)
+.+||.|+||||||||+||+|+++|+||++++.... ........++.++|..|+..+|.... ..
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-------------~~ 68 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDS-------------CE 68 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSS-------------CC
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCC-------------CC
Confidence 468999999999999999999999999999976321 11112345789999999999986532 25
Q ss_pred CCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCC----------------ccccc
Q 008741 277 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGA----------------NTALV 340 (555)
Q Consensus 277 ~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~----------------~~~~~ 340 (555)
+++|..|..+++...+.| .++.||||||||.+|||.||+++.+........... .....
T Consensus 69 ~v~p~~~~~~l~~~~~~f-----~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (355)
T 3i3t_A 69 AVNPTRFRAVFQKYVPSF-----SGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSD 143 (355)
T ss_dssp CBCCHHHHHHHHHHCGGG-----CSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCH
T ss_pred cccHHHHHHHHHHhChhh-----CCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCH
Confidence 799999999999998887 788999999999999999999986544322111000 00001
Q ss_pred cchhhhhhhhhCCCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccc----cccCHHHHH
Q 008741 341 SLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE----AVHTIEDAL 415 (555)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~----~~~sLe~~L 415 (555)
...+...|..+... ..++|.++|+|++.+.++| .|++.+.+.++|++|+|+||.. +..+|+++|
T Consensus 144 ~~~~~~~~~~~~~~-----------~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L 212 (355)
T 3i3t_A 144 DDRANLMWKRYLER-----------EDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCF 212 (355)
T ss_dssp HHHHHHHHHHHHHH-----------CCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHH
T ss_pred HHHHHHHHHHhhhc-----------cCCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHH
Confidence 11122344433322 2356999999999999999 8999999999999999999864 356999999
Q ss_pred HhhcCCcCCcc---cccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCc-eeecCCccccCCC
Q 008741 416 RLFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPS 491 (555)
Q Consensus 416 ~~~~~~E~l~g---~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~ 491 (555)
+.|+..|.+++ +.|+.|+ ..+.+.++..|.++|+||+|||+||.++.....|+...|.||. .|||.+|+.. .
T Consensus 213 ~~~~~~e~l~~~n~~~C~~C~--~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~--~ 288 (355)
T 3i3t_A 213 NLFTKEEELESENAPVCDRCR--QKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASD--K 288 (355)
T ss_dssp HHHHCCEEECGGGCCCCSSSC--CCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC----
T ss_pred HHhCCccccCCCCCeeCCCCC--CccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccC--C
Confidence 99999999998 5566654 4668999999999999999999999999878899999999995 5999998743 3
Q ss_pred CCCccEEEEEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceeeCcccccCCCcEEEEEEEC
Q 008741 492 AEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 555 (555)
Q Consensus 492 ~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~RV 555 (555)
.....|+|+|||+|.|+ +++|||+||+|. +++||+|||+.|+++++++|...+||||||+|+
T Consensus 289 ~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~-~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~ 350 (355)
T 3i3t_A 289 AGSPVYQLYALCNHSGS-VHYGHYTALCRC-QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLM 350 (355)
T ss_dssp --CCEEEEEEEEEEEEE-TTEEEEEEEEEE-TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC
T ss_pred CCCcceEEEEEEEecCC-CCCCeEEEEEEc-CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEec
Confidence 45679999999999996 999999999999 456999999999999999999999999999996
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=4.8e-59 Score=485.23 Aligned_cols=293 Identities=23% Similarity=0.361 Sum_probs=245.0
Q ss_pred CCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCC
Q 008741 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRP 277 (555)
Q Consensus 198 ~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 277 (555)
..+++||.|+||||||||+||||+++|+||++++..... ......++.++|+.|+..|+... .+
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~-~~~~~~~~~~~l~~lf~~l~~~~---------------~~ 66 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE-GDDSSKSVPLALQRVFYELQHSD---------------KP 66 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT-TSCTTTCHHHHHHHHHHHHHHCS---------------SC
T ss_pred CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCC-CCcccccHHHHHHHHHHHHhhcC---------------CC
Confidence 346899999999999999999999999999999865322 12334678999999999987432 46
Q ss_pred CChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCc
Q 008741 278 FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKS 357 (555)
Q Consensus 278 v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (555)
+.|..|...++. +. |.++.||||||||.+|||.|++++....
T Consensus 67 ~~~~~l~~~~~~--~~-----~~~~~QqDA~EFl~~LLd~L~~~~~~~~------------------------------- 108 (353)
T 1nb8_A 67 VGTKKLTKSFGW--ET-----LDSFMQHDVQELCRVLLDNVENKMKGTC------------------------------- 108 (353)
T ss_dssp BCCHHHHHHHTC--CB-----TTTTTTSCHHHHHHHHHHHHHHHTTTST-------------------------------
T ss_pred CCCHHHHhhcCC--CC-----CCcccchhHHHHHHHHHHHHHHHhcCCC-------------------------------
Confidence 788888776642 33 4778999999999999999999863210
Q ss_pred ccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcccccCCCCCCc
Q 008741 358 AVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAG 436 (555)
Q Consensus 358 ~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c~~c~~~~ 436 (555)
..++|.++|+|++.+.++| .|++.+.+.++|++|+|+|+. ..+|+++|..|+.+|.+++.+++.|.+++
T Consensus 109 --------~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~~--~~~l~~~L~~~~~~E~l~~~~~~~C~~c~ 178 (353)
T 1nb8_A 109 --------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG--KKNIFESFVDYVAVEQLDGDNKYDAGEHG 178 (353)
T ss_dssp --------TTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCTT--CSBHHHHHHHHTCCEEECTTTCEECGGGC
T ss_pred --------ccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEECC--CcchHHHHHHhhCccccCCCccccCCcCc
Confidence 1246999999999999999 899999999999999999974 46899999999999999986655555556
Q ss_pred ceeEEEEEEeccCCceEEEEEeeeEeCC--CCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEeeCCCCCce
Q 008741 437 VVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGH 514 (555)
Q Consensus 437 ~~~a~k~~~i~~lP~vLiI~L~Rf~~~~--~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sGH 514 (555)
.+.+.++..|.++|+||+|||+||.++. ....|+++.|.||..|||.+|+..........|+|+|||+|.|. .++||
T Consensus 179 ~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GH 257 (353)
T 1nb8_A 179 LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGH 257 (353)
T ss_dssp EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEESS-TTCCC
T ss_pred cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhhhhcccCCCCCceEEEEEEEEEeCC-CCCcE
Confidence 7889999999999999999999999984 35689999999999999999987655566789999999999999 89999
Q ss_pred EEEEEec-CCCcEEEEeCCCceeeCcccccC---------------CCcEEEEEEEC
Q 008741 515 YTADARY-FNDQWLHFDDASVTAIGTSKVLH---------------DQAYVLFYKQV 555 (555)
Q Consensus 515 Yva~vr~-~~~~W~~fnDs~V~~vs~~~v~~---------------~~aYlLfY~RV 555 (555)
|+||||. .+++||+|||+.|+++++++|+. .+||||||+|.
T Consensus 258 Y~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~ 314 (353)
T 1nb8_A 258 YVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 314 (353)
T ss_dssp EEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEET
T ss_pred EEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEEC
Confidence 9999996 57899999999999999988863 57999999985
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=1.3e-58 Score=490.51 Aligned_cols=318 Identities=25% Similarity=0.355 Sum_probs=250.8
Q ss_pred CCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccC-CC---CCCCcHHHHHHHHHHHhcCCCCCCCccccccccC
Q 008741 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD-IP---KAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLD 273 (555)
Q Consensus 198 ~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~-~~---~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~ 273 (555)
...++||.|+||||||||+||||+++|+||++|+...... .. ....+++++|+.|+..|+..
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~-------------- 76 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKT-------------- 76 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHH--------------
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcC--------------
Confidence 3468999999999999999999999999999998754320 00 12357899999999999742
Q ss_pred CCCCCChHHHHHHHHhcCCCCCCC-CCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhC
Q 008741 274 IGRPFSPSMFEAVLKNFTPDVPNS-ISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVG 352 (555)
Q Consensus 274 ~~~~v~p~~~~~~l~~~~p~~~~~-~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (555)
..++.|..|...++...|.|... .+.++.||||||||.+||+.|++++........ ........|....
T Consensus 77 -~~~v~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~---------~e~~~~~~~~~~~ 146 (404)
T 2ayn_A 77 -SSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSV---------KETDSSSASAATP 146 (404)
T ss_dssp -CSEECCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------------
T ss_pred -CCcCChHHHHHHHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcc---------cccchhhhhhhhc
Confidence 16799999999999998887421 224689999999999999999998743221100 0001122332221
Q ss_pred CCCCcccccccccCCcccccccccEEeEEEEe-cCCccc--eeeecceeeeeeeccccccCHHHHHHhhcCCcCCccccc
Q 008741 353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKAS--ATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRT 429 (555)
Q Consensus 353 ~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s--~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c 429 (555)
....++|.++|+|++.+.++| .|++.+ .+.|+|++|+|+|+.. ..+|+++|+.++. |.++ +.|
T Consensus 147 -----------~~~~s~i~~~F~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~-~~~l~~~L~~~~~-e~l~-~~c 212 (404)
T 2ayn_A 147 -----------SKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQE-VKYLFTGLKLRLQ-EEIT-KQS 212 (404)
T ss_dssp --------------CCHHHHHTCEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSS-CCBHHHHHHHTTE-ECCC-CEE
T ss_pred -----------cccCchhhhhccEEEEEEEEecCCCCccCceeeccCceEEeecCCC-cccHHHHHHHhcc-ccee-ecc
Confidence 123457999999999999999 788874 7999999999999843 3589999999886 5555 678
Q ss_pred CCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCC--CCceeccceeeeCceeecCCccccC------------------
Q 008741 430 SSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVT------------------ 489 (555)
Q Consensus 430 ~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~--~~~~Ki~~~V~fp~~Ldl~~~~~~~------------------ 489 (555)
+.|+. .+.+.++..|.++|+||+|||+||.++. ....|+.+.|.||..|||.+|+...
T Consensus 213 ~~c~~--~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (404)
T 2ayn_A 213 PTLQR--NALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDK 290 (404)
T ss_dssp TTTTE--ECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC-
T ss_pred hhhCC--ccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcc
Confidence 87754 4578999999999999999999999984 3568999999999999999987531
Q ss_pred ------------------------------CCCCCccEEEEEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceeeCc
Q 008741 490 ------------------------------PSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGT 539 (555)
Q Consensus 490 ------------------------------~~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~vs~ 539 (555)
.......|+|+|||+|.|.++++|||+||||..+++||+|||+.|+++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~ 370 (404)
T 2ayn_A 291 KVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTP 370 (404)
T ss_dssp ---------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCH
T ss_pred cchhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCH
Confidence 01235899999999999977999999999999888999999999999999
Q ss_pred ccccCCC-------cEEEEEEEC
Q 008741 540 SKVLHDQ-------AYVLFYKQV 555 (555)
Q Consensus 540 ~~v~~~~-------aYlLfY~RV 555 (555)
++|+... ||||||+|+
T Consensus 371 ~~v~~~~~g~~~~~aYiLfY~r~ 393 (404)
T 2ayn_A 371 EDILRLSGGGDWHIAYVLLYGPR 393 (404)
T ss_dssp HHHGGGGSSSSSCEEEEEEEECC
T ss_pred HHHHhhhCCCCCceEEEEEEEec
Confidence 9998765 999999985
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=3.7e-57 Score=481.17 Aligned_cols=300 Identities=23% Similarity=0.313 Sum_probs=241.3
Q ss_pred cccccCCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCC--------CCcHHHHHHHHHHHhcCCCCCCC
Q 008741 193 VKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKA--------GYPTLTAFVGFVSDFDTPSGGSS 264 (555)
Q Consensus 193 ~~~~~~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~--------~~~~~~~l~~Ll~~l~~~~~~~~ 264 (555)
........++||.|+||||||||+||+|+++|+||++|+.......... ..+++++|+.|+..|+...
T Consensus 16 ~~~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~---- 91 (415)
T 1vjv_A 16 QVQQFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKS---- 91 (415)
T ss_dssp ---CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred cccccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCC----
Confidence 3344555789999999999999999999999999999987543221111 2378999999999998532
Q ss_pred ccccccccCCCCCCChHHHHHHHHhcCCCCCCCCCC--CCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccc
Q 008741 265 KKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISG--RPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSL 342 (555)
Q Consensus 265 ~~~~~~~~~~~~~v~p~~~~~~l~~~~p~~~~~~~~--~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~ 342 (555)
..+++|..|...++...|.|...... ++.||||+|||.+||+.|++++..
T Consensus 92 ----------~~~v~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~------------------ 143 (415)
T 1vjv_A 92 ----------FKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD------------------ 143 (415)
T ss_dssp ----------CCEECCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH------------------
T ss_pred ----------CCccCHHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc------------------
Confidence 26799999999999998877321001 689999999999999999999732
Q ss_pred hhhhhhhhhCCCCCcccccccccCCcccccccccEEeEEEEe-cCCccc--eeeecceeeeeeeccccccCHHHHHHhhc
Q 008741 343 AEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKAS--ATVQPFLLLHLDIYSEAVHTIEDALRLFS 419 (555)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s--~~~e~f~~LsL~I~~~~~~sLe~~L~~~~ 419 (555)
++|.++|+ ++.+.++| .|++.+ .+.|+|++|+|+|+.. ..+|+++|+.++
T Consensus 144 -------------------------~~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~-~~~l~~~L~~~~ 196 (415)
T 1vjv_A 144 -------------------------KFSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGT-TNFMRNGLLEGL 196 (415)
T ss_dssp -------------------------HHHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTT-CCBHHHHHHHHH
T ss_pred -------------------------chHHHHHH-hheEEEEECCCCCCccccccccceeeeeccccc-cchHHHHHHHHh
Confidence 24889999 99999999 788775 5889999999999843 358999999998
Q ss_pred CCcCCcccccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCCC--CceeccceeeeCceeecCCccccC--------
Q 008741 420 APENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVT-------- 489 (555)
Q Consensus 420 ~~E~l~g~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~--~~~Ki~~~V~fp~~Ldl~~~~~~~-------- 489 (555)
.. .++ +.|+.|++ .+.+.++.+|.++|+||+|||+||.++.. ...|+++.|.||..|||.+|+...
T Consensus 197 ~e-~i~-~~c~~c~~--~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~ 272 (415)
T 1vjv_A 197 NE-KIE-KRSDLTGA--NSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKV 272 (415)
T ss_dssp EE-C----------C--CCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHH
T ss_pred hh-hhh-hcccccCC--cccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHhcChhhhhhhhhh
Confidence 74 455 67887765 44899999999999999999999999843 468999999999999999987531
Q ss_pred ------------------------------------------------------------------CCCCCccEEEEEEE
Q 008741 490 ------------------------------------------------------------------PSAEGRKYELVATV 503 (555)
Q Consensus 490 ------------------------------------------------------------------~~~~~~~Y~L~gvI 503 (555)
.......|+|+|||
T Consensus 273 r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv 352 (415)
T 1vjv_A 273 RDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVI 352 (415)
T ss_dssp HHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEE
T ss_pred HHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEE
Confidence 01245889999999
Q ss_pred EEeeCCCCCceEEEEEec--CCCcEEEEeCCCceeeCcccccCCC-------cEEEEEEEC
Q 008741 504 THHGRDPSKGHYTADARY--FNDQWLHFDDASVTAIGTSKVLHDQ-------AYVLFYKQV 555 (555)
Q Consensus 504 ~H~G~s~~sGHYva~vr~--~~~~W~~fnDs~V~~vs~~~v~~~~-------aYlLfY~RV 555 (555)
+|.|.++++|||+||||. .+++||+|||+.|+++++++|.... ||||||+|+
T Consensus 353 ~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~ 413 (415)
T 1vjv_A 353 THQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGF 413 (415)
T ss_dssp EEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEET
T ss_pred EecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEec
Confidence 999977999999999998 5889999999999999999998765 999999996
No 8
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-56 Score=488.23 Aligned_cols=337 Identities=21% Similarity=0.299 Sum_probs=269.2
Q ss_pred ccceeccCC-CccCCCcccccccC-CCCCCccCC-------cccCC-CCcccccCCCCcccccCCCchhHHHHHHHHhCC
Q 008741 154 SKFHVLCDG-NIDGRDQNAAACNS-SISGSKEVP-------MKAIN-EPVKSVKDLLPRGLINSGNLCFLNATLQALMSC 223 (555)
Q Consensus 154 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~-~~~~~~~~~~~~GL~NlGNTCYlNSvLQ~L~~~ 223 (555)
+.|.....+ ++..+..+..+.+. .++..+... ...|. ..+.+....+++||.|+||||||||+||+|+++
T Consensus 118 ~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~~~~~~~~~g~~GL~NlGnTCYmNSvLQ~L~~~ 197 (522)
T 2f1z_A 118 HLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQGATCYMNSLLQTLFFT 197 (522)
T ss_dssp EEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSSCCCTTTTTSCCCBCCC--CTTHHHHHHHHHTC
T ss_pred eEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccccccCCccccCCccceecCcccHHHHHHHHHHhcc
Confidence 444444444 77778777776542 333332211 11222 246667778889999999999999999999999
Q ss_pred hHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCCCCChHHHHHHHHhcCCCCCCCCCCCCC
Q 008741 224 SPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPR 303 (555)
Q Consensus 224 p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~ 303 (555)
|+||++++..... ......++.++|+.|+..|+... .++.|..|...++ .+. |.++.
T Consensus 198 ~~fr~~~~~~~~~-~~~~~~~~~~~l~~lf~~l~~~~---------------~~~~~~~l~~~~~--~~~-----~~~~~ 254 (522)
T 2f1z_A 198 NQLRKAVYMMPTE-GDDSSKSVPLALQRVFYELQHSD---------------KPVGTKKLTKSFG--WET-----LDSFM 254 (522)
T ss_dssp HHHHHHHHTCCCC-SSCTTTCHHHHHHHHHHHHHHCS---------------SCBCCTTHHHHTC--CCT-----TTSST
T ss_pred HHHHHHHhhcccc-CCcccchHHHHHHHHHHHHhcCC---------------CccCcHHHHhhcC--Ccc-----CCCcc
Confidence 9999999765422 12334678999999999987432 4567777765543 123 47889
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCCcccccccccCCcccccccccEEeEEEE
Q 008741 304 QEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVK 383 (555)
Q Consensus 304 QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~ 383 (555)
||||||||.+|||.|++++.... ..++|.++|+|++.+.++
T Consensus 255 QqDa~Efl~~LLd~L~~~l~~~~---------------------------------------~~s~i~~lF~G~~~s~i~ 295 (522)
T 2f1z_A 255 QHDVQELCRVLLDNVENKMKGTC---------------------------------------VEGTIPKLFRGKMVSYIQ 295 (522)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTST---------------------------------------TTTHHHHHHCEEEEEEEC
T ss_pred cccHHHHHHHHHHHHHhhccCCc---------------------------------------cccchhhheeEEEEEEEE
Confidence 99999999999999999874211 124599999999999999
Q ss_pred e-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcccccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEe
Q 008741 384 A-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY 462 (555)
Q Consensus 384 C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~ 462 (555)
| .|++.+.+.++|++|+|+|+. ..+|+++|+.|+..|.+++.+++.|.+++.+.+.++..|.++|+||+|||+||.+
T Consensus 296 C~~C~~~s~~~e~f~~LsL~i~~--~~~l~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~ 373 (522)
T 2f1z_A 296 CKEVDYRSDRREDYYDIQLSIKG--KKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMY 373 (522)
T ss_dssp CSSSCCCCCEEEEESCEEECCTT--CCBHHHHHHHHTCEEEECTTSCBCCGGGCSBCEEEEEEESCCCSEEEEEECCEEE
T ss_pred cCCCCceeeeeeeeEEEEEEeCC--cccchHHHHHhhceeecCCcceeecCcCCccceEEEEEeecCCceEEEEEEeEEE
Confidence 9 899999999999999999974 4689999999999999998776666666778999999999999999999999999
Q ss_pred CC--CCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEeeCCCCCceEEEEEec-CCCcEEEEeCCCceeeCc
Q 008741 463 GS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGT 539 (555)
Q Consensus 463 ~~--~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~-~~~~W~~fnDs~V~~vs~ 539 (555)
+. ....|+++.|.||..|||.+|+..........|+|+|||+|.|. .++|||+||||. .+++||+|||+.|++++.
T Consensus 374 ~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~ 452 (522)
T 2f1z_A 374 DPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTK 452 (522)
T ss_dssp CSSSSCEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEECS-SSCSEEEEEECTTSSSCCEEEETTEEEECCH
T ss_pred cccCCcceEcCcEEeCCCeecchhhhccccCCCCcEEEEEEEEEeccc-CCCceEEEEEecCCCCCEEEEECceeEECCH
Confidence 84 45789999999999999999987655556789999999999999 799999999996 578999999999999999
Q ss_pred ccccC---------------CCcEEEEEEEC
Q 008741 540 SKVLH---------------DQAYVLFYKQV 555 (555)
Q Consensus 540 ~~v~~---------------~~aYlLfY~RV 555 (555)
++|+. .+||||||+|.
T Consensus 453 ~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~ 483 (522)
T 2f1z_A 453 EEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 483 (522)
T ss_dssp HHHSTTSSCCC--------CEEEEEEEEEET
T ss_pred HHHHHhhcCCCccccccCcCCceEEEEEEEC
Confidence 88864 47999999984
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=1.5e-55 Score=476.82 Aligned_cols=316 Identities=25% Similarity=0.378 Sum_probs=252.1
Q ss_pred CCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhc---cCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCC
Q 008741 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT---RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDI 274 (555)
Q Consensus 198 ~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~---~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~ 274 (555)
..+.+||.|+||||||||+||+|+++|+|+++++.... ........++.++|..++..++....... .....
T Consensus 138 ~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~-----~~~~~ 212 (476)
T 3mhs_A 138 RDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQ-----ASSSS 212 (476)
T ss_dssp TTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC------------
T ss_pred CCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccc-----ccccc
Confidence 34679999999999999999999999999999885421 12223456799999999999986432111 01112
Q ss_pred CCCCChHHHHHHHH---hcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhh
Q 008741 275 GRPFSPSMFEAVLK---NFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETV 351 (555)
Q Consensus 275 ~~~v~p~~~~~~l~---~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (555)
...+.|..+...+. +..+.| .+++||||||||.+||+.|++++......... .+...
T Consensus 213 ~~~~~~~~~~~~l~~~~~~~~~f-----~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~---------------~~~~~ 272 (476)
T 3mhs_A 213 TSTNRQTGFIYLLTCAWKINQNL-----AGYSQQDAHEFWQFIINQIHQSYVLDLPNAKE---------------VSRAN 272 (476)
T ss_dssp -CCCSCHHHHHHHHHHHHHCGGG-----SSSSCEEHHHHHHHHHHHHHHHHHHHCCC----------------------C
T ss_pred ccccCcchHHHHHHHHHHhcccc-----CCCCCcCHHHHHHHHHHHHHHHHhhccccccc---------------ccccc
Confidence 23566766665554 677766 78899999999999999999998654431110 00000
Q ss_pred CCCCCcccccccccCCcccccccccEEeEEEEe-cCCccce-eeecceeeeeeeccccccCHHHHHHhhcCCcCCcc--c
Q 008741 352 GPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASA-TVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG--Y 427 (555)
Q Consensus 352 ~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~-~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g--~ 427 (555)
.....++|.++|+|++.+.++| .|++.+. +.++|++|+|+|+. ..+|+++|+.|+.+|.+++ +
T Consensus 273 -----------~~~~~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~--~~sl~~~L~~~~~~E~l~~~~~ 339 (476)
T 3mhs_A 273 -----------NKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD--KKKLYECLDSFHKKEQLKDFNY 339 (476)
T ss_dssp -----------CCSCCSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTT--CCBHHHHHHHHHCCEECSSCCC
T ss_pred -----------cccCCCcceeecceEEEEEEEECCCCCeeCCcccchhhhccchhh--hhHHHHHHHHhcChhhccCCCC
Confidence 0113457999999999999999 7888764 48999999999974 4799999999999999986 6
Q ss_pred ccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeC-CCCceeccceeeeCceeecCCccccCCC--------CCCccEE
Q 008741 428 RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG-SQGSTKLHKSVRFPLQLVLGRDLLVTPS--------AEGRKYE 498 (555)
Q Consensus 428 ~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~-~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~--------~~~~~Y~ 498 (555)
.|+.|+ ..+.+.++..|.++|+||+|||+||.++ .+...|+.+.|.||..|||.+|+..... .....|+
T Consensus 340 ~C~~C~--~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~ 417 (476)
T 3mhs_A 340 HCGECN--STQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYE 417 (476)
T ss_dssp EETTTT--EECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEE
T ss_pred cCCccC--CcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEE
Confidence 677664 4568999999999999999999999987 4457899999999999999999865432 3567899
Q ss_pred EEEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceeeCcccccCCCcEEEEEEE
Q 008741 499 LVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 554 (555)
Q Consensus 499 L~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~R 554 (555)
|+|||+|.|+ +++|||+||+|..+++||+|||+.|+++++++|+..+||||||+|
T Consensus 418 L~avv~H~G~-~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r 472 (476)
T 3mhs_A 418 LIGIVSHKGT-VNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTI 472 (476)
T ss_dssp EEEEEEEEEC-SSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEE
T ss_pred EEEEEEeCCC-CCCCceEEEEECCCCcEEEEeCCceEECCHHHhccCCcEEEEEEE
Confidence 9999999997 999999999998889999999999999999999999999999997
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.2e-54 Score=489.05 Aligned_cols=307 Identities=21% Similarity=0.337 Sum_probs=250.5
Q ss_pred cCCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhh----ccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccc-----
Q 008741 197 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELR----TRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKK----- 267 (555)
Q Consensus 197 ~~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~----~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~----- 267 (555)
...+.+||.|+||||||||+||+|+++|+||++|+... .........++.++|..|+..|+..........
T Consensus 340 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~ 419 (854)
T 3ihp_A 340 FGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGE 419 (854)
T ss_dssp CSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC------------
T ss_pred cCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccccc
Confidence 34466999999999999999999999999999986321 112234456899999999999986542211000
Q ss_pred -cccccCCCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhh
Q 008741 268 -NISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEED 346 (555)
Q Consensus 268 -~~~~~~~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~ 346 (555)
..........++|..|...++..++.| .+++||||||||.+||+.|++++..
T Consensus 420 ~~~~~~~~~~~isP~~f~~~l~~~~~~F-----~~~~QQDA~EFl~~LLd~L~~el~~---------------------- 472 (854)
T 3ihp_A 420 RVPEQKEVQDGIAPRMFKALIGKGHPEF-----STNRQQDAQEFFLHLINMVERNCRS---------------------- 472 (854)
T ss_dssp ---------CCBCCHHHHHHHTTTCTTT-----TSSSCCBHHHHHHHHHHHHHHTCTT----------------------
T ss_pred cccccccCCCccChHHHHHHHhhhcccc-----ccccccCHHHHHHHHHHHHHHHhcc----------------------
Confidence 001113457899999999999998887 7889999999999999999998621
Q ss_pred hhhhhCCCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeecccc------------------
Q 008741 347 EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA------------------ 407 (555)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~------------------ 407 (555)
.++|.++|.|++.+.++| .|++++.+.++|++|+|+||...
T Consensus 473 --------------------~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~ 532 (854)
T 3ihp_A 473 --------------------SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAE 532 (854)
T ss_dssp --------------------SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHH
T ss_pred --------------------cCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccc
Confidence 124889999999999999 89999999999999999998531
Q ss_pred ------------ccCHHHHHHhhcCCcCCcccccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeC-CCCceecccee
Q 008741 408 ------------VHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG-SQGSTKLHKSV 474 (555)
Q Consensus 408 ------------~~sLe~~L~~~~~~E~l~g~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~-~~~~~Ki~~~V 474 (555)
..+|++||+.|+.+|.++++.|..|+ .++.+.|+..|.+||+||+|||+||.++ .....|++..|
T Consensus 533 ~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~y~C~~C~--~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V 610 (854)
T 3ihp_A 533 EEKMALPELVRAQVPFSSCLEAYGAPEQVDDFWSTALQ--AKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSI 610 (854)
T ss_dssp HTTCCCCCCCCEECCHHHHHHHHHSCEEEEEEEETTTT--EEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEEC
T ss_pred cccccccccccCCCCHHHHHHHhcCceEeeeeeccccC--CcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEE
Confidence 25999999999999999999999885 4669999999999999999999999996 45568999999
Q ss_pred eeCceeecCCccccCC----------------------------------------------------------------
Q 008741 475 RFPLQLVLGRDLLVTP---------------------------------------------------------------- 490 (555)
Q Consensus 475 ~fp~~Ldl~~~~~~~~---------------------------------------------------------------- 490 (555)
.||..|||.+|+....
T Consensus 611 ~FP~~LDl~~y~~~~~q~~E~~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~ 690 (854)
T 3ihp_A 611 EMPEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMS 690 (854)
T ss_dssp CCCSEEECGGGBCCCSCTTCCBCCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred ecCCcEehHHhccCCCCCCceecccccccccccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhh
Confidence 9999999998854200
Q ss_pred --------------------------------------------------------------------------------
Q 008741 491 -------------------------------------------------------------------------------- 490 (555)
Q Consensus 491 -------------------------------------------------------------------------------- 490 (555)
T Consensus 691 hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~ 770 (854)
T 3ihp_A 691 HMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDI 770 (854)
T ss_dssp HTTSCGGGSCCCCC--------------CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred ccCcccccccccccccccccccccccCCCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCcccccccccccc
Confidence
Q ss_pred --------------------CCCCccEEEEEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceeeCcccccCCCcEEE
Q 008741 491 --------------------SAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVL 550 (555)
Q Consensus 491 --------------------~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~vs~~~v~~~~aYlL 550 (555)
......|+|+|||+|.|.+.++||||||||. +++||+|||+.|+++ +++....||||
T Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~--~~~~~~~aYil 847 (854)
T 3ihp_A 771 SEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKK-EGRWVIYNDQKVCAS--EKPPKDLGYIY 847 (854)
T ss_dssp -----------------CCCCCCCSEEEEEEEEEEESSCSSCCEEEEEEEE-TTEEEEEETTEEEEC--SSCCTTSCSEE
T ss_pred cccccccccccccccccCCCCCCCceEEEEEEEEeecCCCCCcCeEEEEEe-CCEEEEEECCeeEEc--cccCCCcceEE
Confidence 0012379999999999988999999999999 688999999999997 45677899999
Q ss_pred EEEEC
Q 008741 551 FYKQV 555 (555)
Q Consensus 551 fY~RV 555 (555)
||+||
T Consensus 848 fY~R~ 852 (854)
T 3ihp_A 848 FYQRV 852 (854)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99997
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.96 E-value=3.1e-30 Score=260.31 Aligned_cols=229 Identities=21% Similarity=0.249 Sum_probs=153.6
Q ss_pred CCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCC-CCCcHHHHH-HHHHHHhcCCCCCCCccccccccCCCCC
Q 008741 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPK-AGYPTLTAF-VGFVSDFDTPSGGSSKKKNISVLDIGRP 277 (555)
Q Consensus 200 ~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~-~~~~~~~~l-~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 277 (555)
.|+||.|+||||||||+||+|+++|.+++.|+......... ....+..+| ..|+..|.. ..
T Consensus 8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk-----------------~~ 70 (374)
T 2vhf_A 8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI-----------------YG 70 (374)
T ss_dssp ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH-----------------TS
T ss_pred CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh-----------------cC
Confidence 47899999999999999999999999999998764322110 111366677 677777742 66
Q ss_pred CChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHH-HH-hhcCCCccCCCCccccccchhhhhhhhhCCCC
Q 008741 278 FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDE-LL-KLQGESTSINGANTALVSLAEEDEWETVGPKN 355 (555)
Q Consensus 278 v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~e-l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (555)
+.|..+...|++..|.|....-.++.||||+||+..||..|... +. +..... +
T Consensus 71 ~~P~~~l~~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~-------------------------~ 125 (374)
T 2vhf_A 71 YVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAG-------------------------Q 125 (374)
T ss_dssp EECHHHHHHHHHHHHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEETT-------------------------C
T ss_pred CCcHHHHHHHHHHhHHHhcccCCCccccCHHHHHHHHHHHHhhccccccccccc-------------------------c
Confidence 89999999999999988654223589999999999999988643 10 110000 0
Q ss_pred CcccccccccCCcccccccccEEeEEEEecCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcccccCCCCCC
Q 008741 356 KSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA 435 (555)
Q Consensus 356 ~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c~~c~~~ 435 (555)
. ...+++.++|. |.-.. ....+++++++..+-.+
T Consensus 126 ~--------~~~~~~~q~f~------------------E~~e~-------~~~e~~~qL~e~nfl~~------------- 159 (374)
T 2vhf_A 126 K--------VQDCYFYQIFM------------------EKNEK-------VGVPTIQQLLEWSFINS------------- 159 (374)
T ss_dssp C--------CEEESCEECCC------------------CCC---------CCCCBHHHHHHHHHHHH-------------
T ss_pred c--------ccccHHHHHhc------------------Ccccc-------cCCcHHHHhhhHHHHHc-------------
Confidence 0 00023566664 00000 01235555554422111
Q ss_pred cceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCceeecCCccccC--------------------------
Q 008741 436 GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVT-------------------------- 489 (555)
Q Consensus 436 ~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~-------------------------- 489 (555)
+ +.|.++|+||+||+.||. ...||.++|.||.+||+..++..+
T Consensus 160 g-------ikisrLP~yLtVq~vRFg----KkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~ 228 (374)
T 2vhf_A 160 N-------LKFAEAPSCLIIQMPRFG----KDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISA 228 (374)
T ss_dssp T-------EEESSCCSEEEEECCCCS----SSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTT
T ss_pred C-------CeeecCCcceEEeeeccC----ccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccc
Confidence 1 349999999999999993 346999999999999997665321
Q ss_pred -C----------------------------------------CCCCccEEEEEEEEEeeCCCCCceEEEEEec--CCCcE
Q 008741 490 -P----------------------------------------SAEGRKYELVATVTHHGRDPSKGHYTADARY--FNDQW 526 (555)
Q Consensus 490 -~----------------------------------------~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~--~~~~W 526 (555)
. ..+...|+|+|||+ +++||||||||. .+++|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W 303 (374)
T 2vhf_A 229 GKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAW 303 (374)
T ss_dssp TSCCEECHHHHHHHTTSGGGTTCCCEECCC----------------CCEEEEEEEE-----EETTEEEEEEECSSSTTCE
T ss_pred cccccccchhhhhhhhhhhhhcccccccccCccccccccccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCCe
Confidence 0 01137899999999 789999999998 47899
Q ss_pred EEEeCC
Q 008741 527 LHFDDA 532 (555)
Q Consensus 527 ~~fnDs 532 (555)
++||-.
T Consensus 304 ~~FDsm 309 (374)
T 2vhf_A 304 LFFDSM 309 (374)
T ss_dssp EEEETT
T ss_pred EEEech
Confidence 999853
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=96.76 E-value=0.021 Score=53.18 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=28.0
Q ss_pred EEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceeeC
Q 008741 501 ATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIG 538 (555)
Q Consensus 501 gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~vs 538 (555)
+-++..|. .++|||+.+... .+ +.+|-..+.+++
T Consensus 162 ~~~vF~G~-~~~GHY~~~~~~-~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 162 MHAVYTGT-TQNGHYMVDDIE-HG--YCVDGMGIKPLK 195 (211)
T ss_dssp EEEEEESC-TTTCEEEEEETT-TT--EEEETTEEECCC
T ss_pred eEEEEEcC-CCCceEEEEecc-cc--eEEeCCceeEcc
Confidence 55677998 899999999776 33 899999888886
No 13
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=95.68 E-value=0.49 Score=46.76 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=28.1
Q ss_pred EEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceeeCc
Q 008741 500 VATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGT 539 (555)
Q Consensus 500 ~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~vs~ 539 (555)
++..+..|. .++|||+.+... ++ -+++|-..+.+++.
T Consensus 260 ~~a~vF~G~-~~~GHYt~~~~~-~~-~~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 260 LCANEYTGN-YQCGHYTHITAK-ET-LYRIDGAHLTKMSE 296 (315)
T ss_dssp SEEEEEESC-GGGCEEEEEEES-SS-EEEEETTEEEEESE
T ss_pred EEEEEEECC-CCccceEEEecC-Cc-eeEEeCCcceeccc
Confidence 344556898 789999988874 23 28999999998874
No 14
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=76.56 E-value=1.1 Score=38.30 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=26.5
Q ss_pred EEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceeeCc
Q 008741 500 VATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGT 539 (555)
Q Consensus 500 ~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~vs~ 539 (555)
+|=|.-.|. +|-|-++-.++| ||.+||+...+.++
T Consensus 110 hAgIflkg~----eHAVFa~~TS~G-WyaiDDe~fypwtP 144 (167)
T 1qmy_A 110 HAGIFLKGQ----EHAVFACVTSNG-WYAIDDEDFYPWTP 144 (167)
T ss_dssp EEEEEEETT----TEEEEEECCTTS-SEEEETTEEEECCC
T ss_pred hhheeecCC----CceEEEEEccCc-eEEecccccccCCC
Confidence 444444454 699988888777 99999999988865
No 15
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=40.80 E-value=20 Score=32.58 Aligned_cols=33 Identities=6% Similarity=0.259 Sum_probs=26.6
Q ss_pred EEEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceee
Q 008741 499 LVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAI 537 (555)
Q Consensus 499 L~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~v 537 (555)
..|+||+... |++|..|- +++||-+|=..-.+.
T Consensus 110 ~~~FI~N~~~-----HWfaiRki-gg~WyNLdS~l~~P~ 142 (191)
T 3o65_A 110 ERSFICNYKQ-----HWFTIRKF-GKHWFNLNSLLAGPE 142 (191)
T ss_dssp CCEEEEEESS-----CEEEEEEE-TTEEEECCTTSSSCE
T ss_pred hhhhhhcccc-----ceeeEEec-CCEEEEccCCCCCCC
Confidence 3589999876 99999998 778999998765444
No 16
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=35.78 E-value=48 Score=28.41 Aligned_cols=21 Identities=29% Similarity=0.192 Sum_probs=18.7
Q ss_pred CcccccCCCchhHHHHHHHHh
Q 008741 201 PRGLINSGNLCFLNATLQALM 221 (555)
Q Consensus 201 ~~GL~NlGNTCYlNSvLQ~L~ 221 (555)
..|+.|.-++|++|++||+..
T Consensus 13 fys~pN~hdncWLNtilQLfr 33 (167)
T 1qmy_A 13 FYSRPNNHDNAWLNAILQLFR 33 (167)
T ss_dssp CCCCCCSSSCHHHHHHHHHHH
T ss_pred cccCCCCCcchHHHHHHHHHH
Confidence 468999999999999999765
Done!