Query 008741
Match_columns 555
No_of_seqs 274 out of 1285
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 10:39:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008741.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008741hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nbfa_ d.3.1.9 (A:) Ubiquitin 100.0 5.4E-56 3.9E-60 458.5 25.9 294 197-555 2-314 (347)
2 d2ayna1 d.3.1.9 (A:100-482) Ub 100.0 8.6E-53 6.3E-57 438.0 20.2 316 200-554 3-382 (383)
3 d2gfoa1 d.3.1.9 (A:762-1109) U 100.0 1.6E-49 1.1E-53 407.5 24.6 326 198-555 12-348 (348)
4 d2hd5a1 d.3.1.9 (A:211-521) Ub 100.0 1.2E-48 8.4E-53 398.0 29.0 323 200-554 2-335 (336)
5 d1vjva_ d.3.1.9 (A:) Ubiquitin 100.0 2E-46 1.4E-50 389.9 24.5 293 200-555 5-395 (397)
6 d1qmya_ d.3.1.2 (A:) FMDV lead 82.5 0.25 1.8E-05 39.9 1.9 36 500-540 110-145 (156)
7 d1ixda_ b.34.10.1 (A:) Cylindr 68.2 2 0.00015 33.2 3.6 71 96-166 14-95 (104)
8 d1qmya_ d.3.1.2 (A:) FMDV lead 40.0 18 0.0013 28.7 4.8 22 199-221 12-33 (156)
9 d1v8ha1 b.1.18.19 (A:2-107) Su 16.8 67 0.0049 24.1 4.2 55 494-554 16-79 (106)
10 d1kkea2 b.21.1.2 (A:313-455) R 16.8 17 0.0012 28.5 0.5 27 51-78 55-81 (143)
No 1
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=5.4e-56 Score=458.49 Aligned_cols=294 Identities=23% Similarity=0.365 Sum_probs=251.5
Q ss_pred cCCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCC
Q 008741 197 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGR 276 (555)
Q Consensus 197 ~~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 276 (555)
+.++.+||.|+||||||||+||+|+++|+||++++..... ......++.++|+.++..|+... .
T Consensus 2 ~~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~-~~~~~~~~~~~l~~lf~~l~~~~---------------~ 65 (347)
T d1nbfa_ 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE-GDDSSKSVPLALQRVFYELQHSD---------------K 65 (347)
T ss_dssp CSSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCT-TCCTTTCHHHHHHHHHHHHHHCS---------------S
T ss_pred CCCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCcc-CCcccchHHHHHHHHHHHHhcCC---------------C
Confidence 3456799999999999999999999999999999875432 23345678999999999886432 5
Q ss_pred CCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCC
Q 008741 277 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNK 356 (555)
Q Consensus 277 ~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (555)
++.|..+...+.. + .+..+.||||+||+..||+.|++++....
T Consensus 66 ~~~~~~~~~~~~~--~-----~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~------------------------------ 108 (347)
T d1nbfa_ 66 PVGTKKLTKSFGW--E-----TLDSFMQHDVQELCRVLLDNVENKMKGTC------------------------------ 108 (347)
T ss_dssp CBCCHHHHHHTTC--C-----GGGGGSCBCHHHHHHHHHHHHHHHHTTST------------------------------
T ss_pred CcChHHHHHhhch--h-----hcchHHHHHHHHHHHHHHHHHHHHHhhcc------------------------------
Confidence 6778777665531 1 23667999999999999999999874322
Q ss_pred cccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcccccCCCCCC
Q 008741 357 SAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA 435 (555)
Q Consensus 357 ~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c~~c~~~ 435 (555)
..++|.++|.|++.+.+.| .|++.+.+.++|+.|+|+++. ..+++++|..++..|.+++..+.+|.|+
T Consensus 109 ---------~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~L~i~~--~~~~~~~l~~~~~~e~l~~~~~~~~~~~ 177 (347)
T d1nbfa_ 109 ---------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG--KKNIFESFVDYVAVEQLDGDNKYDAGEH 177 (347)
T ss_dssp ---------TTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESSEEEECTT--CCBHHHHHHHHTCCEEECGGGCEECSTT
T ss_pred ---------ccccccceeceEEEEeEEeCCccceeeeecccccccccccc--ccchhhhHHhhcchheeccccccccccC
Confidence 1235899999999999999 799999999999999999974 4689999999999999998887777778
Q ss_pred cceeEEEEEEeccCCceEEEEEeeeEeCC--CCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEeeCCCCCc
Q 008741 436 GVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKG 513 (555)
Q Consensus 436 ~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~--~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sG 513 (555)
+...+.++..|.++|++|+|||+||.++. ....|++..|.||..|||.+|+..........|+|+|||+|.|. .++|
T Consensus 178 ~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~G 256 (347)
T d1nbfa_ 178 GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGG 256 (347)
T ss_dssp CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEEE-TTEE
T ss_pred cceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeeccccccccccccCccceeeEEEEEecCC-CCCC
Confidence 88899999999999999999999999873 45679999999999999999998877778899999999999998 6999
Q ss_pred eEEEEEecC-CCcEEEEeCCCceeeCcccccC---------------CCcEEEEEEEC
Q 008741 514 HYTADARYF-NDQWLHFDDASVTAIGTSKVLH---------------DQAYVLFYKQV 555 (555)
Q Consensus 514 HYva~vr~~-~~~W~~fnDs~V~~vs~~~v~~---------------~~aYlLfY~RV 555 (555)
||+||+|.. +++||+|||+.|+++++++|+. .+||||||+|.
T Consensus 257 HY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~ 314 (347)
T d1nbfa_ 257 HYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 314 (347)
T ss_dssp EEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEG
T ss_pred EEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEec
Confidence 999999975 6789999999999999999973 26999999984
No 2
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=8.6e-53 Score=437.95 Aligned_cols=316 Identities=25% Similarity=0.362 Sum_probs=243.7
Q ss_pred CCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCC----CCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCC
Q 008741 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIP----KAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIG 275 (555)
Q Consensus 200 ~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~----~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~ 275 (555)
.|+||.|+||||||||+||+|+++|+|+++|......... .....+.++|+.|+..|+...
T Consensus 3 ~P~GL~N~GNtCY~NSvLQ~L~~ip~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--------------- 67 (383)
T d2ayna1 3 LPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS--------------- 67 (383)
T ss_dssp CCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred CCcCcCCCCchhHHHHHHHHHHccHHHHHHHHhhhhhccCCCccccHHHHHHHHHHHHHHHhcCC---------------
Confidence 5899999999999999999999999999999865432111 112346788899998886432
Q ss_pred CCCChHHHHHHHHhcCCCCCC-CCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCC
Q 008741 276 RPFSPSMFEAVLKNFTPDVPN-SISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPK 354 (555)
Q Consensus 276 ~~v~p~~~~~~l~~~~p~~~~-~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (555)
..+.|..+...++...+.+.. ..+.++.|||||||+.+||+.|++++......... .......+....
T Consensus 68 ~~~~p~~~~~~l~~~~~~~~~~~~~~~~~QqDa~Ef~~~ll~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~-- 136 (383)
T d2ayna1 68 SSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVK---------ETDSSSASAATP-- 136 (383)
T ss_dssp SEECCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC--------------------------
T ss_pred CccCHHHHHHHHHHHhHhhccccccCchhhhhHHHHHHHHHHHHHHHHHhhhccccc---------cccchhhhhccc--
Confidence 668999999999988887653 23466789999999999999999887543321110 000011111111
Q ss_pred CCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccc-cccCHHHHHHhhcCCcCCcccccCCC
Q 008741 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE-AVHTIEDALRLFSAPENLEGYRTSST 432 (555)
Q Consensus 355 ~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~-~~~sLe~~L~~~~~~E~l~g~~c~~c 432 (555)
....++|.++|+|++.+.+.| .|...+.+.+.+..++|+++.. ...++.++|+.++..+... .|..|
T Consensus 137 ---------~~~~s~i~~lF~g~~~~~~~c~~c~~~~~~~~~~~~l~L~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~ 205 (383)
T d2ayna1 137 ---------SKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITK--QSPTL 205 (383)
T ss_dssp ------------CCHHHHHTCEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEECCCC--EETTT
T ss_pred ---------ccCCCeeeeeeeEEEEEEEEecCCCceeeecccccccccccccccccchhhhhhhhhhcccccc--ccccc
Confidence 113457999999999999999 7888888888888888887743 4568999999998877664 67666
Q ss_pred CCCcceeEEEEEEeccCCceEEEEEeeeEeCC--CCceeccceeeeCceeecCCccccC---------------------
Q 008741 433 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVT--------------------- 489 (555)
Q Consensus 433 ~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~--~~~~Ki~~~V~fp~~Ldl~~~~~~~--------------------- 489 (555)
++ ...+.++.+|.++|++|+|||+||.++. ....|+...|.||..|||.+++...
T Consensus 206 ~~--~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (383)
T d2ayna1 206 QR--NALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVN 283 (383)
T ss_dssp TE--ECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----
T ss_pred Cc--ceeeeeeeeeecccceeeeeccceeecccCcceeecCcEEccCCeeechhhcchhhhccccchhhhhhhhhhhhhc
Confidence 44 4578889999999999999999999873 3457999999999999998886320
Q ss_pred ---------------------------CCCCCccEEEEEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceeeCcccc
Q 008741 490 ---------------------------PSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKV 542 (555)
Q Consensus 490 ---------------------------~~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~vs~~~v 542 (555)
......+|+|+|||+|.|.++++|||+||||..+++||+|||..|+++++++|
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~s~~~GHY~a~vk~~~~~W~~~nD~~V~~v~~~~v 363 (383)
T d2ayna1 284 QQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDI 363 (383)
T ss_dssp ------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHH
T ss_pred cccCccccccccccccccccccccccccCCCCceEEEEEEEEEECCCCCCCCcEEEEECCCCeEEEEECCceEEeCHHHH
Confidence 11234579999999999977999999999998888999999999999999999
Q ss_pred cCC-------CcEEEEEEE
Q 008741 543 LHD-------QAYVLFYKQ 554 (555)
Q Consensus 543 ~~~-------~aYlLfY~R 554 (555)
++. .||||||.|
T Consensus 364 ~~~~~~~~~~~aYiLfY~r 382 (383)
T d2ayna1 364 LRLSGGGDWHIAYVLLYGP 382 (383)
T ss_dssp GGGGSSSSSCEEEEEEEEC
T ss_pred HHhhCCCCCCceEEEEEEE
Confidence 753 499999997
No 3
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.6e-49 Score=407.55 Aligned_cols=326 Identities=30% Similarity=0.444 Sum_probs=255.3
Q ss_pred CCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhc------cCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccc
Q 008741 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT------RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISV 271 (555)
Q Consensus 198 ~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~------~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~ 271 (555)
.++.+||.|+||||||||+||+|+++|+|++++..... ........++.+.|+.|+..++...
T Consensus 12 ~~g~vGL~N~GNtCYlNSvLQ~L~~ip~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~----------- 80 (348)
T d2gfoa1 12 GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ----------- 80 (348)
T ss_dssp STTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC-----------
T ss_pred CCCeECCccCCchhHHHHHHHHHHcCHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHhCC-----------
Confidence 34569999999999999999999999999999874321 1112334578999999999887543
Q ss_pred cCCCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCcccc-ccchhhhhhhh
Q 008741 272 LDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTAL-VSLAEEDEWET 350 (555)
Q Consensus 272 ~~~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 350 (555)
...+.|..|...+.+..+.+ ..+.||||+|||..||+.|++++................. ........|..
T Consensus 81 ---~~~i~~~~~~~~~~~~~~~~-----~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (348)
T d2gfoa1 81 ---YRYISPKDFKITIGKINDQF-----AGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQK 152 (348)
T ss_dssp ---EEEECCHHHHHHHHHHCGGG-----SSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHH
T ss_pred ---CCccccccccccccccCccc-----cCcccCCHHHHHHHHHHHHHHHhhhcccccccccccccccchhhhhhhhhhh
Confidence 26789999999999988876 6789999999999999999999865443222111111110 00111222332
Q ss_pred hCCCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCccccc
Q 008741 351 VGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRT 429 (555)
Q Consensus 351 ~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c 429 (555)
.... ..+++.++|.|.+.+...| .|...+...+++..++++++.....+++++|+.|+..+.+++..+
T Consensus 153 ~~~~-----------~~s~i~~~f~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~ 221 (348)
T d2gfoa1 153 HKQL-----------NESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNR 221 (348)
T ss_dssp HHHH-----------CCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTC
T ss_pred cccc-----------CCchhHhhhhhhhheeccccCCCceeeccccceeechhhcccccCcHHHHHHHhhhhcccccccc
Confidence 2221 2346899999999999999 788888889999999999987778899999999999999987554
Q ss_pred CCCC-CCcceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCce-eecCCccccCCCCCCccEEEEEEEEEee
Q 008741 430 SSTG-NAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHG 507 (555)
Q Consensus 430 ~~c~-~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~~-Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G 507 (555)
..|. |+.+.....+..+..+|++|++++.||.++.....+......||.. +|+..++.. .......|+|+|||+|.|
T Consensus 222 ~~c~~c~~~~~~~~~~~~~~~p~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~L~avi~H~G 300 (348)
T d2gfoa1 222 FYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG-PKNNLKKYNLFSVSNHYG 300 (348)
T ss_dssp EEETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCS-CCSSCCCBEEEEEEEEES
T ss_pred eeccccCcceeeeEEEEEEeCCccceeceeeeeccCccceeeccccccccccccccceecC-CCCCCCCEEEEEEEEEeC
Confidence 4332 3456678888899999999999999999998778888888888865 777766543 345567899999999999
Q ss_pred CCCCCceEEEEEecC-CCcEEEEeCCCceeeCcccccCCCcEEEEEEEC
Q 008741 508 RDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 555 (555)
Q Consensus 508 ~s~~sGHYva~vr~~-~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~RV 555 (555)
+ +++|||+||+|+. +++||+|||+.|+++++++|.+.+||||||+||
T Consensus 301 ~-~~~GHY~~~ik~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r~ 348 (348)
T d2gfoa1 301 G-LDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSL 348 (348)
T ss_dssp C-TTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC
T ss_pred C-CCCceEEEEEEeCCcCeEEEEECCcCeECCHHHccCCCcEEEEEEeC
Confidence 6 9999999999974 678999999999999999999999999999997
No 4
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.2e-48 Score=398.00 Aligned_cols=323 Identities=31% Similarity=0.426 Sum_probs=250.5
Q ss_pred CCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhc----cCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCC
Q 008741 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT----RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIG 275 (555)
Q Consensus 200 ~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~----~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~ 275 (555)
+.+||.|+||||||||+||+|+++|+||++++.... ........++++.+..|+..++.... .
T Consensus 2 g~~GL~N~GNtCYlNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-------------~ 68 (336)
T d2hd5a1 2 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSP-------------N 68 (336)
T ss_dssp CCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTHHHHC---CCSSCCHHHHHHHHHHHHHHTSCT-------------T
T ss_pred CccCCcCCCcchHHHHHHHHHHcCHHHHHHHHhcchhhhcccCCChhHHHHHHHHHHHHHHHhCCC-------------C
Confidence 468999999999999999999999999999875421 11223456889999999998875432 2
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCC-CCccccccchhhhhhhhhCCC
Q 008741 276 RPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSIN-GANTALVSLAEEDEWETVGPK 354 (555)
Q Consensus 276 ~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 354 (555)
..+.|..++..+....+.+ ..+.||||+||+.+||+.|++++.+......... ..............|.....
T Consensus 69 ~~i~p~~~~~~~~~~~~~~-----~~~~q~Da~Ef~~~lld~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 142 (336)
T d2hd5a1 69 DVVSPSEFKTQIQRYAPRF-----VGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLE- 142 (336)
T ss_dssp CEECCHHHHHHHHHHCGGG-----SSCCCBCHHHHHHHHHHHHHHHTCCC------------CCCHHHHHHHHHHHHHT-
T ss_pred CCCCchhhhcccccccccc-----cCcccccHHHHHHHHHHHHHHHHhhhhcccccCccccccccchhhHHHHHHhhhc-
Confidence 6789999999999988876 6789999999999999999999754433221111 00000111111122222222
Q ss_pred CCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccc--cccCHHHHHHhhcCCcCCcccccCC
Q 008741 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE--AVHTIEDALRLFSAPENLEGYRTSS 431 (555)
Q Consensus 355 ~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~--~~~sLe~~L~~~~~~E~l~g~~c~~ 431 (555)
...+.|..+|.+++.....| .|...+.+.+.+..+.++++.. ...+|+++|+.|+..|.+++..+..
T Consensus 143 ----------~~~~~i~~~f~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~l~~~~~~~ 212 (336)
T d2hd5a1 143 ----------REDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPT 212 (336)
T ss_dssp ----------TCCCHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEEECC------CBHHHHHHHHTSCEEECGGGCCE
T ss_pred ----------cccchhhhhhhhheeeeeeccccCceeeecccccccccccccccCCCCCHHHHHHhcCCceEecCccccc
Confidence 23346899999999999999 7888899999999999988743 3458999999999999998865544
Q ss_pred -CCCCcceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCc-eeecCCccccCCCCCCccEEEEEEEEEeeCC
Q 008741 432 -TGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSAEGRKYELVATVTHHGRD 509 (555)
Q Consensus 432 -c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s 509 (555)
+.+...+.+.+...+.++|++|+|+++||.++.....+....+.++. .+||.++... .....+|+|+|||+|.|+
T Consensus 213 ~~~~~~~~~~~k~~~~~~~P~~l~i~~~r~~~~~~~~~~~~~~v~~~~~~~dl~~~~~~--~~~~~~Y~L~~vi~H~G~- 289 (336)
T d2hd5a1 213 CCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASE--NTNHAVYNLYAVSNHSGT- 289 (336)
T ss_dssp ETTTTEECCEEEEEEEEECCSEEEEEEECEECCSSCCEECCCCCBCCSSCEECGGGBSS--SSCCCEEEEEEEEEEEEC-
T ss_pred ccccccceeeEEEEEEeecccchhhhhhhhhhccccccccceeEeeccccccccccccC--CCCCCeEeEEEEEEEeCC-
Confidence 34455677889999999999999999999999777777778888774 6999988643 345678999999999997
Q ss_pred CCCceEEEEEecC-CCcEEEEeCCCceeeCcccccCCCcEEEEEEE
Q 008741 510 PSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 554 (555)
Q Consensus 510 ~~sGHYva~vr~~-~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~R 554 (555)
+++|||+||+|+. +++|++|||+.|+++++++|...+||||||+|
T Consensus 290 ~~~GHY~~~ik~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiL~Y~r 335 (336)
T d2hd5a1 290 TMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYEL 335 (336)
T ss_dssp SSCEEEEEEEECTTTCCEEEEETTEEEEECGGGSCCTTEEEEEEEE
T ss_pred CCCceEEEEEEcCCCCeEEEEECCceeECCHHHhccCCCEEEEEEc
Confidence 8999999999975 67999999999999999999999999999999
No 5
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=2e-46 Score=389.93 Aligned_cols=293 Identities=25% Similarity=0.374 Sum_probs=212.5
Q ss_pred CCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCC--------CCcHHHHHHHHHHHhcCCCCCCCccccccc
Q 008741 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKA--------GYPTLTAFVGFVSDFDTPSGGSSKKKNISV 271 (555)
Q Consensus 200 ~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~--------~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~ 271 (555)
.|+||.|+||||||||+||+|+++|+|+++|+.......... ..+++++|..|+..|+...
T Consensus 5 ~p~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~----------- 73 (397)
T d1vjva_ 5 LPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKS----------- 73 (397)
T ss_dssp CCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC------------
T ss_pred CCCCCCCCCccHHHHHHHHHHHcCHHHHHHHHhCCcccccccccccccchHHHHHHHHHHHHHHHHhCC-----------
Confidence 589999999999999999999999999999987542221111 1246788899998887543
Q ss_pred cCCCCCCChHHHHHHHHhcCCCCC--CCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhh
Q 008741 272 LDIGRPFSPSMFEAVLKNFTPDVP--NSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWE 349 (555)
Q Consensus 272 ~~~~~~v~p~~~~~~l~~~~p~~~--~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (555)
...+.|..+...|+...|.|. ...+.++.||||||||..||+.|++++...
T Consensus 74 ---~~~i~p~~~~~~l~~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~l~~~------------------------ 126 (397)
T d1vjva_ 74 ---FKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGDK------------------------ 126 (397)
T ss_dssp ---CCEECCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTHH------------------------
T ss_pred ---CCccCHHHHHHHHHHHhhhhccccccccccccccHHHHHHHHHHHHHHHhccc------------------------
Confidence 267999999999999887663 233456789999999999999999987431
Q ss_pred hhCCCCCcccccccccCCcccccccccEEeEEEEe-cCC--ccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcc
Q 008741 350 TVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGN--KASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG 426 (555)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~--~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g 426 (555)
+...|.+.+...+.| .++ ......+.+..+++.+.... ..+...+...+. +.++
T Consensus 127 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~-~~~~- 183 (397)
T d1vjva_ 127 --------------------FSEDFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGTT-NFMRNGLLEGLN-EKIE- 183 (397)
T ss_dssp --------------------HHTTTCEEEEEEEEETTEEEEEEEECCCEESCEEECCCTTC-CBHHHHHHHHHE-EC---
T ss_pred --------------------hhhhhcceeeeeEEecccccccceecceeeeeeeeeeccce-eechHHHHhhhh-hhhc-
Confidence 556777788888887 222 23333455566666665332 233444333221 2222
Q ss_pred cccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeC--CCCceeccceeeeCceeecCCcccc----------------
Q 008741 427 YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLV---------------- 488 (555)
Q Consensus 427 ~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~--~~~~~Ki~~~V~fp~~Ldl~~~~~~---------------- 488 (555)
..|..|++. ..+.++..+.++|++|++||+||.++ .....|+...+.||..+|+.+++..
T Consensus 184 ~~~~~~~~~--~~~~~~~~i~~~p~~l~i~l~R~~~~~~~~~~~k~~~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~ 261 (397)
T d1vjva_ 184 KRSDLTGAN--SIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKV 261 (397)
T ss_dssp -------CC--CCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCC--ceeeeeceeecCCceeEEEeeeeeeccccccccccCceeecCcEEecccccchhhhhhhhhhhHhhhhh
Confidence 345555443 35667778999999999999999987 3446799999999999999776421
Q ss_pred ----------------------------------------------------------CCCCCCccEEEEEEEEEeeCCC
Q 008741 489 ----------------------------------------------------------TPSAEGRKYELVATVTHHGRDP 510 (555)
Q Consensus 489 ----------------------------------------------------------~~~~~~~~Y~L~gvI~H~G~s~ 510 (555)
........|+|+|||+|.|.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~ 341 (397)
T d1vjva_ 262 EKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANS 341 (397)
T ss_dssp HHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSST
T ss_pred hhccchHHHHHhhhccCCccccccccchhhccchhcccchhccchhhhccccccccccccCCCCCCEEEEEEEEEecCCC
Confidence 0112356799999999999878
Q ss_pred CCceEEEEEecC--CCcEEEEeCCCceeeCcccccC-------CCcEEEEEEEC
Q 008741 511 SKGHYTADARYF--NDQWLHFDDASVTAIGTSKVLH-------DQAYVLFYKQV 555 (555)
Q Consensus 511 ~sGHYva~vr~~--~~~W~~fnDs~V~~vs~~~v~~-------~~aYlLfY~RV 555 (555)
++|||+||+|++ +++||+|||+.|++|++++|.. ..||||||+||
T Consensus 342 ~~GHY~ay~r~~~~~~~W~~~nD~~V~~v~~~~V~~~~~~~~~~~aYlLfY~r~ 395 (397)
T d1vjva_ 342 ESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGF 395 (397)
T ss_dssp TSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEET
T ss_pred CCcCeEEEEECCCCCCEEEEEECCCCEECCHHHHHHhhCCCCCCeEEEEEEEec
Confidence 999999999975 5789999999999999999975 35999999997
No 6
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}
Probab=82.47 E-value=0.25 Score=39.94 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=27.8
Q ss_pred EEEEEEeeCCCCCceEEEEEecCCCcEEEEeCCCceeeCcc
Q 008741 500 VATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTS 540 (555)
Q Consensus 500 ~gvI~H~G~s~~sGHYva~vr~~~~~W~~fnDs~V~~vs~~ 540 (555)
+|=|.-.|. +|-|-++-.++| ||.+||+...+.++.
T Consensus 110 hAgiflkg~----eHAVFa~~TS~G-WyaiDDe~fypwtPd 145 (156)
T d1qmya_ 110 HAGIFLKGQ----EHAVFACVTSNG-WYAIDDEDFYPWTPD 145 (156)
T ss_dssp EEEEEEETT----TEEEEEECCTTS-SEEEETTEEEECCCC
T ss_pred eeeeEecCC----CceEEEEEccCc-eEEecccccccCCCC
Confidence 455555555 699988888777 999999999988653
No 7
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.18 E-value=2 Score=33.25 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCCcccC----CcccccCCCCCccccccccccccccccccccccCC------CCCCCCcccceeccCC-Cc
Q 008741 96 ASNDHDLGAVGCPKEN----GHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGG------HANPSPISKFHVLCDG-NI 164 (555)
Q Consensus 96 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~ 164 (555)
.....++|..++|..+ |+|++++.......-..++++++...........+ +...+.+.+...+..+ +|
T Consensus 14 ~~~~l~vG~rV~V~~~~~~~G~vryvG~~~~~~g~~~GVeldd~~~G~ndGt~~G~rYF~C~~~~G~Fv~~~~~~~~~~f 93 (104)
T d1ixda_ 14 NSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRF 93 (104)
T ss_dssp SSSCCCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEECCTT
T ss_pred CCCCCccCCEEEECCCCCcEEEEEEEecCCCCCCcEEEEEeCCCCCCCcCCEECCEEEEecCCCcEEEechHHCcccccc
Confidence 3566788998888765 89999999866655556888865443333333222 4455555555555444 34
Q ss_pred cC
Q 008741 165 DG 166 (555)
Q Consensus 165 ~~ 166 (555)
..
T Consensus 94 ~~ 95 (104)
T d1ixda_ 94 AS 95 (104)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 8
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}
Probab=39.96 E-value=18 Score=28.68 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=17.8
Q ss_pred CCCcccccCCCchhHHHHHHHHh
Q 008741 199 LLPRGLINSGNLCFLNATLQALM 221 (555)
Q Consensus 199 ~~~~GL~NlGNTCYlNSvLQ~L~ 221 (555)
....+..|..| ||+||+||+..
T Consensus 12 ~f~s~pnnhdN-cWLN~ilQLfr 33 (156)
T d1qmya_ 12 TFYSRPNNHDN-AWLNAILQLFR 33 (156)
T ss_dssp ECCCCCCSSSC-HHHHHHHHHHH
T ss_pred eeecCCCcccc-hHHHHHHHHHH
Confidence 34567778888 99999999764
No 9
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=16.80 E-value=67 Score=24.14 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=38.9
Q ss_pred CccEEEEEEEEEe---eCCC-CCc-----eEEEEEecCCCcEEEEeCCCceeeCcccccCCCcEEEEEEE
Q 008741 494 GRKYELVATVTHH---GRDP-SKG-----HYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 554 (555)
Q Consensus 494 ~~~Y~L~gvI~H~---G~s~-~sG-----HYva~vr~~~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~R 554 (555)
...-++...|.|- |... ..| ||+..+. +.+|+..|-.+.+....+.+||+-|+-+
T Consensus 16 G~v~~vk~li~HPMeTG~r~d~~g~~IPa~~I~~v~------v~~ng~~v~~a~~~~svS~NP~~~F~~~ 79 (106)
T d1v8ha1 16 GEEFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVE------VYFEGEKVAEARPGPSTSANPLYAFKFK 79 (106)
T ss_dssp TCEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEE------EEETTEEEEEECCCSSCCSSCEEEEEEE
T ss_pred CCeEEEEEEEECCCccccccCCCCCEecHHheEEEE------EEECCEEEEEEEcCCcccCCCeEEEEEc
Confidence 3456677777663 2211 123 7777666 4579999999999999999999999854
No 10
>d1kkea2 b.21.1.2 (A:313-455) Reovirus attachment protein sigma 1 head domain {Reovirus [TaxId: 10891]}
Probab=16.80 E-value=17 Score=28.47 Aligned_cols=27 Identities=26% Similarity=0.107 Sum_probs=20.8
Q ss_pred ceeeeeeecccCCCCCCCCCccCCCcee
Q 008741 51 SLNFGTESSLVGTTDEPNGKSVVDGPVV 78 (555)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (555)
+|||+||.+..-.+++- +++....|+.
T Consensus 55 ~lNFVtGL~p~~~TG~T-ePs~ttd~~s 81 (143)
T d1kkea2 55 SLNFVTGLLPPLLTGDT-EPAFHNDVVT 81 (143)
T ss_dssp EEETTSSBCTTCCGGGG-CBTTTTCCCC
T ss_pred EEEEeccCCCCccCCCC-CCccccCccc
Confidence 79999999999888776 5555555555
Done!