BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008742
(555 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0F9L7|GOGC2_ARATH Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1
Length = 668
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 250/552 (45%), Positives = 315/552 (57%), Gaps = 59/552 (10%)
Query: 1 MAHWISNKLKVAETFLQQIDQQAAESLGKGDKPRSEDPQID-GPSKSSGSVSLKDQLKKR 59
MA+WIS+KLK AET LQQ+DQQAA+SL K +K + D + P S VSLKDQL+K+
Sbjct: 1 MANWISSKLKAAETILQQLDQQAADSLRKDEKSETHDEVFETSPKSGSSPVSLKDQLRKK 60
Query: 60 TQEIND-----YRGKLQSDPNV----KNV-----YNRNNSFTSSKETKPKSTLTDSDWTE 105
T E +D R + P+ K V + S S T+ + LTD+DWTE
Sbjct: 61 TYEGSDSGSGSQRNSTEQKPSYLSSSKKVRKPDQSHERTSAPSQSLTQDNTKLTDNDWTE 120
Query: 106 LLGTPDKGLSLGNVRKDERRRQGGTLGNRNRKINKNSSLIKSGWSKVNGGNKP--SDGDE 163
LL TP++ S R GGT R L K G N G P SDG +
Sbjct: 121 LLSTPNQRTSTSTSRSP-----GGTSAIRG--------LKKDGKRHGNLGKNPLVSDGKK 167
Query: 164 SGSS------GRSSSVELQNDGKNINGQDVKPQDGRSKEND---DVKKNS--RLEMVSVP 212
S SS GR + Q + + + + P D K + D+ NS + V
Sbjct: 168 SSSSNVVNSRGRP---QKQTNKEPSDKEVSSPSDADMKNRNAPRDIFVNSTHKESEKDVS 224
Query: 213 GKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVLNDSKRG--SSSTSEDG----- 265
GK D + N+ R S G R+SV R S S DG
Sbjct: 225 GKTPPLDDSRRSANETLPRETSPSVGKRDGRESRRSSVWGKQVREEVSQSNVSDGLTRKE 284
Query: 266 --------SDSNSDSSSSESESEREREERRKLKEKILAEKAAAKAGDAIKERENMVARLE 317
SS++SE ER+REERR+ +E++ AEK A KA IKERENMVARLE
Sbjct: 285 SSLSSDESESDYESDSSTDSERERQREERRRRRERVFAEKVATKAVAVIKERENMVARLE 344
Query: 318 GEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETAN 377
GEK SLEKI+EERAKQQ +EA+ELQT+MMET++A +LEKQ+HNNTRME L LA LE N
Sbjct: 345 GEKLSLEKIVEERAKQQAQEAAELQTNMMETLEAADLEKQKHNNTRMEVLTRLAGLEAEN 404
Query: 378 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKG 437
A+L R+LAA QKKLE + +QVA L+QQ ELKE EEL + N G LK+L S+G
Sbjct: 405 AELTRSLAAGQKKLETQIDQVAVLKQQVELKESTLEELKRNTFNIGGRGTTLKQLDTSRG 464
Query: 438 VEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDH 497
+FE ++LEAE + + DKI +L+DKA KLE +IEM RKE+E+PTEVEIELKRRL QLTDH
Sbjct: 465 DKFEHQMLEAEISLLTDKIGRLQDKATKLEADIEMMRKELEEPTEVEIELKRRLNQLTDH 524
Query: 498 LIQKQAQVFPLN 509
LIQKQ+QV L+
Sbjct: 525 LIQKQSQVEALS 536
>sp|A3KNA5|FIL1L_DANRE Filamin A-interacting protein 1-like OS=Danio rerio GN=filip1l PE=2
SV=1
Length = 1129
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 92/188 (48%), Gaps = 17/188 (9%)
Query: 329 ERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQ 388
ER ++++KE ++ +++T D FE ++R++N + A L+ +LET+ +L++ A +
Sbjct: 627 ERLRRKLKEMKVVEGDLLKTEDEFESLEKRYSNEQERAKALMEELETSRKELSKYQLAEK 686
Query: 389 KKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAE 448
+ E+NQ +Q K + EE ++ + T + +++ G E L+ +
Sbjct: 687 E----ESNQ-----EQILYKRLKEEE-AKSSHLTREVEALKEKIHEYMGTEESICRLKTD 736
Query: 449 YTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELK-----RRLGQLTDHLIQKQA 503
+T + K+ Q E + K+L +E +E+E L+ RR L H+ K+
Sbjct: 737 HTTLQRKLTQQEVRNKELAREMETLTRELERYRRFSKSLRPGMNGRRFSDL--HVSTKEV 794
Query: 504 QVFPLNFL 511
Q P + L
Sbjct: 795 QTDPTDSL 802
>sp|Q7SXE4|GOGA5_DANRE Golgin subfamily A member 5 OS=Danio rerio GN=golga5 PE=2 SV=1
Length = 760
Score = 32.3 bits (72), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 130/299 (43%), Gaps = 57/299 (19%)
Query: 247 RASVLNDSKRGSSSTSEDGSDSNSDSSSSESESEREREERRKLKEKILAEKAAAKAGDAI 306
R +L D GSS S+ +E+ +RE+E R+++ + A
Sbjct: 360 RVRILQDHSEGSSLHSQAVQTLQDRLRDAEAAVKREQESYRQIQSEFAAR---------- 409
Query: 307 KERENMVARLEGEKQSLEKIL---EERAKQQVKEASELQTSMMETMDAFELEKQRHNNTR 363
+A++E E+Q+L + L E R ++ + A +LQ + A E KQ + +
Sbjct: 410 ------LAKVEAERQTLAESLTNAERRLTEEKQRAEDLQQQAKSSRSAAEYTKQELQDYK 463
Query: 364 MEALQLLAK----------------LETANADLARALAAAQKKLEME-----TNQVAELR 402
+A ++L LE A A + +K+L+ E Q+ LR
Sbjct: 464 NKASRILQSKEKLINSLKEGSGLEVLEGAGAGVELEELRHEKELQREEIQKLQAQIQSLR 523
Query: 403 QQTELKEVAHEELSQRNSNTHQTG----IYLKRLAASKGVEFEREILEAEYTFIADKI-- 456
TE++++ + L++ S Q + +++ A + +E E E + E +I ++
Sbjct: 524 --TEIQDLETQALTENESWREQLAEVQEQHAQQIRAKQEIEAELERSKQELQYIEEEHHR 581
Query: 457 --IQLEDKAKKLEGNI-----EMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPL 508
I L+ + K E I ++T K + + ++ E+E RL QLT+ LIQKQ + L
Sbjct: 582 TKITLQGRVKDREDEIQKLRNQLTNKALSNSSQAELE--GRLHQLTETLIQKQTMLEAL 638
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.125 0.331
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,895,393
Number of Sequences: 539616
Number of extensions: 8446087
Number of successful extensions: 70797
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 3335
Number of HSP's that attempted gapping in prelim test: 48208
Number of HSP's gapped (non-prelim): 13466
length of query: 555
length of database: 191,569,459
effective HSP length: 123
effective length of query: 432
effective length of database: 125,196,691
effective search space: 54084970512
effective search space used: 54084970512
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 64 (29.3 bits)