Query 008742
Match_columns 555
No_of_seqs 40 out of 42
Neff 2.5
Searched_HMMs 46136
Date Thu Mar 28 16:00:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4677 Golgi integral membran 99.9 1.8E-24 3.9E-29 224.6 19.8 223 291-525 170-467 (554)
2 PF09787 Golgin_A5: Golgin sub 99.9 1.4E-23 3E-28 218.1 20.8 222 304-526 123-430 (511)
3 TIGR02168 SMC_prok_B chromosom 97.8 0.035 7.6E-07 61.2 30.0 17 311-327 705-721 (1179)
4 KOG1029 Endocytic adaptor prot 97.8 0.017 3.7E-07 65.9 26.4 148 367-515 405-561 (1118)
5 TIGR02169 SMC_prok_A chromosom 97.6 0.056 1.2E-06 60.1 28.4 10 92-101 33-42 (1164)
6 TIGR02169 SMC_prok_A chromosom 97.6 0.12 2.6E-06 57.6 29.4 10 75-84 24-33 (1164)
7 COG1196 Smc Chromosome segrega 97.0 0.65 1.4E-05 54.3 28.8 184 338-523 728-925 (1163)
8 PF00261 Tropomyosin: Tropomyo 96.9 0.12 2.6E-06 50.1 18.2 181 330-523 30-210 (237)
9 PHA02562 46 endonuclease subun 96.8 0.8 1.7E-05 48.0 25.2 43 338-380 204-246 (562)
10 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.8 0.066 1.4E-06 48.0 15.0 114 350-463 6-121 (132)
11 KOG0161 Myosin class II heavy 96.8 0.67 1.4E-05 57.6 27.8 176 338-520 1011-1220(1930)
12 KOG0161 Myosin class II heavy 96.8 0.51 1.1E-05 58.5 26.2 215 301-522 1288-1538(1930)
13 KOG0996 Structural maintenance 96.7 0.17 3.6E-06 60.0 20.9 157 304-469 858-1027(1293)
14 TIGR00606 rad50 rad50. This fa 96.7 0.45 9.8E-06 56.2 24.7 30 502-531 1060-1090(1311)
15 COG1196 Smc Chromosome segrega 96.6 2.1 4.5E-05 50.3 28.8 14 180-193 112-125 (1163)
16 KOG0994 Extracellular matrix g 96.5 1.1 2.5E-05 53.6 25.4 52 312-364 1533-1584(1758)
17 TIGR00606 rad50 rad50. This fa 96.2 1.2 2.7E-05 52.7 24.2 28 397-424 793-820 (1311)
18 COG1579 Zn-ribbon protein, pos 96.2 0.31 6.7E-06 49.0 16.7 123 348-477 11-133 (239)
19 PRK02224 chromosome segregatio 96.2 2.2 4.7E-05 47.7 24.7 19 441-459 621-639 (880)
20 PF05667 DUF812: Protein of un 96.1 1.4 3E-05 49.2 22.4 84 382-465 394-479 (594)
21 PRK02224 chromosome segregatio 96.1 3.3 7.2E-05 46.3 29.2 47 374-420 257-303 (880)
22 PRK11637 AmiB activator; Provi 96.0 0.8 1.7E-05 47.7 19.4 50 370-419 77-126 (428)
23 PF05701 WEMBL: Weak chloropla 96.0 3 6.5E-05 45.3 26.1 31 485-515 368-398 (522)
24 PF08317 Spc7: Spc7 kinetochor 96.0 0.51 1.1E-05 48.0 17.1 151 362-520 150-309 (325)
25 PRK03918 chromosome segregatio 95.9 2.8 6E-05 46.6 23.6 31 485-515 669-699 (880)
26 PF00038 Filament: Intermediat 95.8 2.1 4.6E-05 42.1 21.9 115 293-415 8-136 (312)
27 PRK04863 mukB cell division pr 95.8 3.3 7.2E-05 50.6 25.5 80 444-523 394-476 (1486)
28 KOG1029 Endocytic adaptor prot 95.8 3.7 8E-05 48.0 24.3 35 311-346 420-454 (1118)
29 PHA02562 46 endonuclease subun 95.7 3.3 7.2E-05 43.5 22.6 28 496-523 379-406 (562)
30 PF09726 Macoilin: Transmembra 95.6 2.7 5.9E-05 47.7 22.6 89 315-407 422-513 (697)
31 PRK04863 mukB cell division pr 95.5 5.2 0.00011 49.0 25.8 21 497-517 559-579 (1486)
32 PRK03918 chromosome segregatio 95.4 6 0.00013 44.1 27.2 32 487-518 389-420 (880)
33 PF07888 CALCOCO1: Calcium bin 95.2 6.8 0.00015 43.8 27.9 173 313-499 166-349 (546)
34 PF12128 DUF3584: Protein of u 95.0 10 0.00023 45.0 27.0 25 441-465 477-501 (1201)
35 TIGR01843 type_I_hlyD type I s 95.0 4.4 9.6E-05 40.4 20.3 104 369-475 131-238 (423)
36 PF05701 WEMBL: Weak chloropla 94.9 7.3 0.00016 42.4 25.7 39 291-329 152-190 (522)
37 PF12128 DUF3584: Protein of u 94.8 12 0.00025 44.6 27.3 42 356-397 709-754 (1201)
38 PF10174 Cast: RIM-binding pro 94.6 10 0.00022 44.0 23.4 84 434-531 515-607 (775)
39 PRK09039 hypothetical protein; 94.5 7 0.00015 40.6 20.1 52 371-422 112-163 (343)
40 PF15070 GOLGA2L5: Putative go 94.4 2.7 5.8E-05 47.2 18.1 154 344-515 1-155 (617)
41 KOG0996 Structural maintenance 94.3 16 0.00035 44.3 24.5 143 368-510 391-549 (1293)
42 KOG0977 Nuclear envelope prote 94.2 5.6 0.00012 44.5 19.9 120 384-503 94-218 (546)
43 PF10168 Nup88: Nuclear pore c 94.2 4.1 9E-05 46.4 19.2 63 436-498 635-701 (717)
44 PF14662 CCDC155: Coiled-coil 94.2 2.1 4.5E-05 42.3 14.8 102 398-501 45-149 (193)
45 PF09755 DUF2046: Uncharacteri 94.1 8.9 0.00019 40.4 29.6 54 335-388 72-133 (310)
46 PF00261 Tropomyosin: Tropomyo 94.1 6.2 0.00013 38.5 23.2 124 304-427 22-151 (237)
47 PRK09039 hypothetical protein; 94.0 2.1 4.5E-05 44.4 15.3 44 331-374 48-91 (343)
48 smart00787 Spc7 Spc7 kinetocho 94.0 4.1 8.8E-05 42.1 17.3 141 372-519 155-303 (312)
49 KOG0994 Extracellular matrix g 93.9 12 0.00025 45.8 22.3 30 472-501 1721-1750(1758)
50 PF05335 DUF745: Protein of un 93.9 7 0.00015 38.2 18.0 121 293-417 46-172 (188)
51 PF12777 MT: Microtubule-bindi 93.8 7.7 0.00017 39.8 18.9 94 438-531 219-313 (344)
52 PF14362 DUF4407: Domain of un 93.8 5.3 0.00011 39.7 17.1 143 390-555 136-282 (301)
53 PF05667 DUF812: Protein of un 93.8 5.1 0.00011 44.9 18.6 141 334-476 326-483 (594)
54 KOG0250 DNA repair protein RAD 93.7 20 0.00044 43.0 25.0 178 305-497 222-409 (1074)
55 KOG4674 Uncharacterized conser 93.3 23 0.00051 44.6 24.3 217 305-523 655-878 (1822)
56 KOG4809 Rab6 GTPase-interactin 93.2 18 0.00039 41.0 21.4 57 456-515 516-572 (654)
57 KOG0980 Actin-binding protein 92.8 26 0.00055 41.7 25.8 125 372-508 421-545 (980)
58 TIGR02680 conserved hypothetic 92.8 29 0.00063 42.1 24.8 21 282-302 735-755 (1353)
59 PRK11281 hypothetical protein; 92.5 25 0.00055 42.3 22.7 48 339-386 124-171 (1113)
60 PF00769 ERM: Ezrin/radixin/mo 92.4 3.7 8.1E-05 40.8 13.8 92 362-462 6-97 (246)
61 PF06120 Phage_HK97_TLTM: Tail 92.4 16 0.00035 38.2 18.7 129 347-477 41-171 (301)
62 TIGR01843 type_I_hlyD type I s 91.9 15 0.00032 36.8 19.2 18 399-416 206-223 (423)
63 KOG0612 Rho-associated, coiled 91.8 39 0.00085 41.4 24.7 53 463-515 723-775 (1317)
64 PF07888 CALCOCO1: Calcium bin 91.6 28 0.0006 39.2 29.1 39 485-523 413-451 (546)
65 KOG4674 Uncharacterized conser 91.5 22 0.00047 44.9 21.2 118 352-469 1009-1128(1822)
66 KOG0933 Structural maintenance 91.5 36 0.00078 41.1 22.0 59 365-423 847-905 (1174)
67 KOG0249 LAR-interacting protei 91.1 10 0.00022 44.2 16.8 100 359-461 154-258 (916)
68 KOG0612 Rho-associated, coiled 90.8 45 0.00097 40.9 22.1 10 168-177 328-337 (1317)
69 PF10186 Atg14: UV radiation r 90.5 17 0.00036 34.9 16.7 20 485-504 129-148 (302)
70 PF15619 Lebercilin: Ciliary p 90.5 6.5 0.00014 38.2 13.0 120 387-508 3-144 (194)
71 KOG0977 Nuclear envelope prote 89.9 36 0.00079 38.4 19.4 42 293-342 46-87 (546)
72 PF10168 Nup88: Nuclear pore c 89.8 38 0.00083 38.9 20.1 101 318-421 561-664 (717)
73 PF08317 Spc7: Spc7 kinetochor 89.8 11 0.00025 38.4 14.6 108 369-476 143-252 (325)
74 KOG4673 Transcription factor T 89.7 48 0.001 38.9 22.3 171 313-507 497-680 (961)
75 KOG4643 Uncharacterized coiled 89.5 50 0.0011 40.0 20.9 182 340-523 198-421 (1195)
76 PF13851 GAS: Growth-arrest sp 89.5 22 0.00047 34.6 19.9 143 345-507 25-168 (201)
77 PF13166 AAA_13: AAA domain 89.3 38 0.00082 37.1 20.0 12 540-551 507-518 (712)
78 PF14662 CCDC155: Coiled-coil 89.1 25 0.00054 35.1 15.7 122 366-495 6-129 (193)
79 PRK15178 Vi polysaccharide exp 88.7 41 0.00089 36.8 19.4 99 366-465 284-383 (434)
80 KOG0250 DNA repair protein RAD 88.6 66 0.0014 39.0 24.9 70 437-513 398-467 (1074)
81 PF10174 Cast: RIM-binding pro 88.3 58 0.0013 38.1 20.3 72 434-510 379-454 (775)
82 KOG2129 Uncharacterized conser 87.9 50 0.0011 36.8 19.8 152 313-490 138-308 (552)
83 PF00038 Filament: Intermediat 86.9 34 0.00074 33.8 25.1 50 377-426 164-225 (312)
84 TIGR01010 BexC_CtrB_KpsE polys 86.8 27 0.00059 35.5 15.1 30 396-425 170-199 (362)
85 PF12718 Tropomyosin_1: Tropom 86.7 27 0.00058 32.4 17.6 14 485-498 125-138 (143)
86 KOG0018 Structural maintenance 86.4 89 0.0019 38.1 23.2 53 463-515 383-438 (1141)
87 KOG0933 Structural maintenance 85.9 91 0.002 38.0 20.2 30 317-346 768-797 (1174)
88 PF04156 IncA: IncA protein; 85.9 26 0.00056 32.5 13.2 27 380-406 86-112 (191)
89 PRK10884 SH3 domain-containing 85.9 7.7 0.00017 38.1 10.2 43 364-409 89-131 (206)
90 TIGR01010 BexC_CtrB_KpsE polys 85.5 45 0.00098 34.0 20.5 124 338-463 179-308 (362)
91 PF12808 Mto2_bdg: Micro-tubul 85.5 3 6.4E-05 33.7 6.0 45 344-388 5-49 (52)
92 PF10186 Atg14: UV radiation r 85.3 15 0.00033 35.1 11.9 25 369-393 21-45 (302)
93 PF15397 DUF4618: Domain of un 85.2 50 0.0011 34.1 18.4 39 311-349 52-94 (258)
94 PF05557 MAD: Mitotic checkpoi 84.8 0.29 6.2E-06 54.4 0.0 27 497-523 275-301 (722)
95 PF15070 GOLGA2L5: Putative go 84.3 81 0.0018 35.9 23.9 109 369-477 175-288 (617)
96 PF09730 BicD: Microtubule-ass 84.2 36 0.00078 39.4 15.9 74 435-508 368-445 (717)
97 KOG4807 F-actin binding protei 84.2 47 0.001 36.9 15.9 83 287-381 369-459 (593)
98 KOG0978 E3 ubiquitin ligase in 84.1 92 0.002 36.3 24.2 139 337-477 462-617 (698)
99 PF06160 EzrA: Septation ring 83.8 76 0.0016 35.1 21.5 108 301-408 98-213 (560)
100 PRK10929 putative mechanosensi 83.6 1.2E+02 0.0025 37.1 22.4 33 491-523 267-299 (1109)
101 PRK10884 SH3 domain-containing 83.3 21 0.00045 35.2 12.0 62 314-393 96-157 (206)
102 PF15035 Rootletin: Ciliary ro 82.6 22 0.00048 34.4 11.7 34 372-405 6-39 (182)
103 PF04156 IncA: IncA protein; 82.1 42 0.00092 31.0 14.9 85 336-420 95-182 (191)
104 PF09789 DUF2353: Uncharacteri 82.1 68 0.0015 34.0 15.7 116 346-465 15-151 (319)
105 PF09726 Macoilin: Transmembra 82.0 1.1E+02 0.0023 35.5 32.4 23 449-471 589-611 (697)
106 KOG0962 DNA repair protein RAD 81.8 74 0.0016 39.3 17.7 58 367-424 208-265 (1294)
107 PRK10476 multidrug resistance 81.5 40 0.00087 34.0 13.5 37 387-423 105-141 (346)
108 PF04111 APG6: Autophagy prote 81.1 19 0.00042 37.1 11.3 37 388-424 49-85 (314)
109 KOG0971 Microtubule-associated 80.9 1.4E+02 0.0031 36.3 23.8 170 333-508 262-477 (1243)
110 PF14992 TMCO5: TMCO5 family 79.2 67 0.0015 33.6 14.4 73 304-395 25-97 (280)
111 PF05622 HOOK: HOOK protein; 79.0 0.63 1.4E-05 51.8 0.0 56 370-426 276-331 (713)
112 PF11559 ADIP: Afadin- and alp 78.6 51 0.0011 29.9 16.9 55 347-401 38-92 (151)
113 PF07111 HCR: Alpha helical co 78.2 1.5E+02 0.0032 34.9 24.8 153 357-516 165-358 (739)
114 smart00787 Spc7 Spc7 kinetocho 77.8 81 0.0018 32.9 14.6 109 369-477 138-248 (312)
115 KOG0999 Microtubule-associated 77.7 1.4E+02 0.0031 34.5 19.9 68 396-463 107-186 (772)
116 COG2433 Uncharacterized conser 77.6 21 0.00045 40.9 11.0 34 462-495 475-508 (652)
117 PF01576 Myosin_tail_1: Myosin 77.5 0.73 1.6E-05 52.8 0.0 58 466-523 241-298 (859)
118 PF06160 EzrA: Septation ring 77.1 1.3E+02 0.0027 33.5 22.1 178 339-518 281-494 (560)
119 PF12795 MscS_porin: Mechanose 77.0 76 0.0017 31.0 14.1 124 346-477 51-189 (240)
120 PRK09841 cryptic autophosphory 76.8 1.3E+02 0.0028 34.2 16.9 89 368-462 311-399 (726)
121 PF04111 APG6: Autophagy prote 76.6 6.4 0.00014 40.5 6.4 119 400-525 13-135 (314)
122 PRK11637 AmiB activator; Provi 76.5 1.1E+02 0.0023 32.4 25.8 38 377-414 168-205 (428)
123 KOG0963 Transcription factor/C 75.6 1.6E+02 0.0035 34.0 25.1 47 436-482 299-345 (629)
124 PF09730 BicD: Microtubule-ass 75.6 1.7E+02 0.0037 34.2 18.7 45 433-477 121-169 (717)
125 PF08614 ATG16: Autophagy prot 75.5 35 0.00076 32.4 10.6 66 347-419 74-139 (194)
126 PF02841 GBP_C: Guanylate-bind 75.4 57 0.0012 32.9 12.5 57 364-420 179-235 (297)
127 KOG4643 Uncharacterized coiled 75.4 2.1E+02 0.0045 35.2 20.7 85 386-470 506-601 (1195)
128 KOG1853 LIS1-interacting prote 75.4 1.2E+02 0.0025 32.3 16.3 40 454-500 164-208 (333)
129 TIGR00634 recN DNA repair prot 75.2 1.4E+02 0.0029 32.9 21.3 23 364-386 269-291 (563)
130 TIGR03185 DNA_S_dndD DNA sulfu 74.8 1.5E+02 0.0032 33.2 26.2 74 396-470 391-465 (650)
131 TIGR03007 pepcterm_ChnLen poly 74.6 1.2E+02 0.0026 32.1 19.3 21 449-469 326-346 (498)
132 PF11180 DUF2968: Protein of u 74.3 54 0.0012 32.7 11.7 101 352-463 84-184 (192)
133 PRK11281 hypothetical protein; 73.6 2.2E+02 0.0049 34.7 21.1 54 371-424 124-177 (1113)
134 PF00769 ERM: Ezrin/radixin/mo 73.4 53 0.0011 32.9 11.6 40 437-476 86-125 (246)
135 KOG0971 Microtubule-associated 72.8 2.3E+02 0.0051 34.6 23.4 17 371-387 371-387 (1243)
136 PF10212 TTKRSYEDQ: Predicted 72.6 1.1E+02 0.0024 34.5 14.8 127 366-505 314-503 (518)
137 PF05335 DUF745: Protein of un 72.2 1E+02 0.0023 30.3 13.3 97 372-477 78-174 (188)
138 KOG0964 Structural maintenance 72.0 1.3E+02 0.0029 36.7 15.8 65 360-424 663-734 (1200)
139 PF05622 HOOK: HOOK protein; 71.9 1.2 2.7E-05 49.5 0.0 99 304-406 301-401 (713)
140 PF12240 Angiomotin_C: Angiomo 71.6 40 0.00087 33.9 10.2 24 485-508 139-162 (205)
141 PLN03188 kinesin-12 family pro 71.3 79 0.0017 39.1 14.2 71 336-421 1180-1254(1320)
142 PF09789 DUF2353: Uncharacteri 70.4 30 0.00064 36.6 9.5 92 379-470 13-116 (319)
143 TIGR03007 pepcterm_ChnLen poly 69.9 1.5E+02 0.0033 31.3 19.3 28 437-464 321-348 (498)
144 PF13851 GAS: Growth-arrest sp 69.5 1.2E+02 0.0025 29.7 18.8 27 395-421 92-118 (201)
145 PF11559 ADIP: Afadin- and alp 69.3 89 0.0019 28.3 14.9 19 341-359 53-71 (151)
146 KOG0993 Rab5 GTPase effector R 68.8 2E+02 0.0044 32.3 16.2 130 379-526 67-216 (542)
147 PF05911 DUF869: Plant protein 68.6 1.3E+02 0.0028 35.4 14.8 58 360-417 588-645 (769)
148 KOG1003 Actin filament-coating 68.6 1.4E+02 0.003 30.3 20.2 161 313-477 6-181 (205)
149 PF01576 Myosin_tail_1: Myosin 68.2 1.7 3.6E-05 50.0 0.0 219 304-522 482-726 (859)
150 PF07106 TBPIP: Tat binding pr 68.0 43 0.00093 31.0 9.1 57 398-461 81-137 (169)
151 KOG0979 Structural maintenance 67.7 3E+02 0.0065 33.8 21.0 87 304-407 643-736 (1072)
152 PRK15422 septal ring assembly 67.5 30 0.00064 30.4 7.3 58 367-424 3-60 (79)
153 PF13747 DUF4164: Domain of un 67.4 85 0.0018 27.3 10.8 74 311-389 8-81 (89)
154 PRK11519 tyrosine kinase; Prov 67.1 2.3E+02 0.005 32.2 16.9 85 372-462 315-399 (719)
155 COG1579 Zn-ribbon protein, pos 67.0 1.6E+02 0.0034 30.3 20.5 20 372-391 63-82 (239)
156 PF15066 CAGE1: Cancer-associa 66.9 2.3E+02 0.005 32.2 19.9 100 308-418 328-433 (527)
157 PF04849 HAP1_N: HAP1 N-termin 66.7 1.8E+02 0.0039 30.9 14.2 111 397-507 161-301 (306)
158 PRK09343 prefoldin subunit bet 66.5 76 0.0016 28.6 10.1 39 435-473 73-111 (121)
159 PTZ00121 MAEBL; Provisional 66.1 3.9E+02 0.0084 34.5 19.7 16 93-108 885-900 (2084)
160 PF07798 DUF1640: Protein of u 65.6 1.2E+02 0.0027 28.6 17.5 96 362-476 52-153 (177)
161 COG2433 Uncharacterized conser 65.2 26 0.00056 40.2 8.3 71 441-511 430-503 (652)
162 PF10211 Ax_dynein_light: Axon 64.8 1.3E+02 0.0027 29.2 11.8 77 387-464 111-187 (189)
163 PF05110 AF-4: AF-4 proto-onco 64.7 4.6 0.0001 48.6 2.7 31 250-280 436-466 (1191)
164 PF01920 Prefoldin_2: Prefoldi 64.7 80 0.0017 26.2 9.3 37 435-471 64-100 (106)
165 PF04012 PspA_IM30: PspA/IM30 64.6 1.3E+02 0.0029 28.6 17.7 21 489-509 165-185 (221)
166 PRK11578 macrolide transporter 64.3 68 0.0015 32.7 10.5 36 390-425 152-187 (370)
167 PF05557 MAD: Mitotic checkpoi 64.1 2.2 4.8E-05 47.5 0.0 26 435-460 276-301 (722)
168 TIGR01834 PHA_synth_III_E poly 64.1 2.1E+02 0.0045 30.6 15.2 124 374-503 178-317 (320)
169 PF10146 zf-C4H2: Zinc finger- 64.0 1.3E+02 0.0028 30.4 12.1 30 447-476 74-103 (230)
170 PF13514 AAA_27: AAA domain 62.9 3.3E+02 0.0071 32.5 25.6 26 366-391 806-831 (1111)
171 COG5185 HEC1 Protein involved 62.6 2.8E+02 0.0062 31.7 15.3 32 434-465 331-362 (622)
172 KOG1937 Uncharacterized conser 62.5 2.7E+02 0.0059 31.5 18.8 19 313-331 233-251 (521)
173 KOG2129 Uncharacterized conser 62.1 2.7E+02 0.0059 31.4 15.4 104 310-413 189-323 (552)
174 PF07111 HCR: Alpha helical co 62.1 3.3E+02 0.0071 32.3 23.3 159 289-453 311-498 (739)
175 KOG0995 Centromere-associated 61.6 2.3E+02 0.005 32.6 14.6 144 357-500 213-382 (581)
176 PF07926 TPR_MLP1_2: TPR/MLP1/ 61.5 1.3E+02 0.0027 27.3 15.9 18 315-332 7-24 (132)
177 PF07321 YscO: Type III secret 61.4 98 0.0021 29.5 10.2 80 386-465 15-99 (152)
178 PTZ00266 NIMA-related protein 60.4 3.7E+02 0.0081 32.7 16.8 13 68-80 145-157 (1021)
179 PF12761 End3: Actin cytoskele 60.4 37 0.00081 33.8 7.6 36 389-424 160-195 (195)
180 PF04582 Reo_sigmaC: Reovirus 59.8 9.5 0.0002 40.4 3.6 122 365-495 32-153 (326)
181 TIGR01005 eps_transp_fam exopo 59.7 3E+02 0.0065 31.0 21.4 61 402-462 344-405 (754)
182 PF05911 DUF869: Plant protein 59.1 3.7E+02 0.0079 31.9 19.9 49 369-424 100-148 (769)
183 TIGR03752 conj_TIGR03752 integ 58.6 38 0.00083 37.6 8.0 68 396-463 66-139 (472)
184 PRK01156 chromosome segregatio 58.4 3.4E+02 0.0073 31.2 27.9 84 393-476 633-724 (895)
185 PF07798 DUF1640: Protein of u 58.0 1.7E+02 0.0037 27.6 14.1 49 398-454 46-94 (177)
186 TIGR03185 DNA_S_dndD DNA sulfu 58.0 3.1E+02 0.0068 30.7 25.5 25 453-477 390-414 (650)
187 TIGR01005 eps_transp_fam exopo 57.6 3.2E+02 0.007 30.8 20.9 7 399-405 291-297 (754)
188 PF06637 PV-1: PV-1 protein (P 56.7 2.1E+02 0.0046 31.8 12.8 88 326-413 289-387 (442)
189 PF09755 DUF2046: Uncharacteri 56.5 2.8E+02 0.006 29.7 23.0 57 435-498 231-291 (310)
190 PRK10246 exonuclease subunit S 56.2 4.2E+02 0.0092 31.7 27.1 21 441-461 778-798 (1047)
191 TIGR02231 conserved hypothetic 55.7 71 0.0015 34.5 9.3 21 369-389 72-92 (525)
192 PRK13428 F0F1 ATP synthase sub 55.4 3.1E+02 0.0066 29.8 15.2 33 373-405 88-121 (445)
193 TIGR00634 recN DNA repair prot 54.4 3.3E+02 0.0073 30.0 21.0 44 382-425 251-295 (563)
194 PF04889 Cwf_Cwc_15: Cwf15/Cwc 53.9 46 0.00099 33.7 7.1 8 264-271 133-140 (244)
195 PF14197 Cep57_CLD_2: Centroso 53.3 1.1E+02 0.0024 25.7 8.2 41 434-474 27-67 (69)
196 PF10481 CENP-F_N: Cenp-F N-te 53.0 3.2E+02 0.0069 29.3 16.8 49 373-421 86-134 (307)
197 PF10498 IFT57: Intra-flagella 52.9 1.1E+02 0.0024 32.6 10.0 98 386-483 193-323 (359)
198 PRK10361 DNA recombination pro 52.3 3.8E+02 0.0083 30.1 23.1 45 448-492 166-215 (475)
199 TIGR00998 8a0101 efflux pump m 52.2 2.5E+02 0.0054 27.8 12.6 23 401-423 113-135 (334)
200 PF07106 TBPIP: Tat binding pr 51.8 1.4E+02 0.0031 27.6 9.5 65 441-510 73-137 (169)
201 PF11932 DUF3450: Protein of u 51.7 1.8E+02 0.0039 28.6 10.7 61 365-425 39-99 (251)
202 PF03962 Mnd1: Mnd1 family; I 51.6 86 0.0019 30.3 8.3 68 441-509 63-130 (188)
203 KOG0639 Transducin-like enhanc 51.3 49 0.0011 37.7 7.4 58 442-499 25-92 (705)
204 TIGR03017 EpsF chain length de 50.5 3.1E+02 0.0068 28.5 18.8 25 338-362 180-204 (444)
205 PF12795 MscS_porin: Mechanose 49.7 2.6E+02 0.0057 27.3 22.3 42 365-406 96-137 (240)
206 PF13514 AAA_27: AAA domain 48.4 5.5E+02 0.012 30.7 26.9 19 444-462 805-823 (1111)
207 PF03962 Mnd1: Mnd1 family; I 47.8 2.1E+02 0.0046 27.8 10.3 23 439-461 141-163 (188)
208 PLN02939 transferase, transfer 47.4 6.2E+02 0.013 31.0 17.1 86 436-523 260-364 (977)
209 PF15186 TEX13: Testis-express 47.3 2.8E+02 0.0062 27.1 11.5 42 378-419 67-108 (152)
210 PF10234 Cluap1: Clusterin-ass 47.3 3.5E+02 0.0077 28.2 12.4 103 347-453 135-238 (267)
211 KOG0018 Structural maintenance 46.7 6.7E+02 0.014 31.2 20.1 42 386-427 392-433 (1141)
212 PF06005 DUF904: Protein of un 46.6 90 0.002 26.5 6.7 36 367-402 3-38 (72)
213 PF02403 Seryl_tRNA_N: Seryl-t 46.4 1.6E+02 0.0034 25.2 8.3 21 438-458 41-61 (108)
214 KOG0946 ER-Golgi vesicle-tethe 46.1 6.3E+02 0.014 30.7 21.5 101 311-425 622-728 (970)
215 PRK04778 septation ring format 46.0 4.6E+02 0.01 29.1 23.4 50 466-515 453-512 (569)
216 PF14817 HAUS5: HAUS augmin-li 45.7 3.1E+02 0.0067 31.7 12.6 127 379-507 83-216 (632)
217 PRK09841 cryptic autophosphory 45.1 5.2E+02 0.011 29.5 16.1 10 48-57 16-25 (726)
218 KOG0978 E3 ubiquitin ligase in 44.8 5.9E+02 0.013 30.1 21.6 114 365-480 528-647 (698)
219 PF04849 HAP1_N: HAP1 N-termin 44.8 3.5E+02 0.0075 28.9 12.0 24 358-381 156-180 (306)
220 PF08657 DASH_Spc34: DASH comp 44.7 86 0.0019 32.1 7.5 45 437-481 177-221 (259)
221 PRK10929 putative mechanosensi 44.1 7.1E+02 0.015 30.8 20.6 14 484-497 288-301 (1109)
222 PF11932 DUF3450: Protein of u 44.0 3.3E+02 0.0071 26.9 13.0 63 355-417 43-105 (251)
223 PF10146 zf-C4H2: Zinc finger- 44.0 3.6E+02 0.0078 27.3 14.5 88 361-469 15-103 (230)
224 PF06008 Laminin_I: Laminin Do 43.7 3.4E+02 0.0073 26.9 22.3 115 308-424 42-167 (264)
225 PRK15178 Vi polysaccharide exp 43.6 5E+02 0.011 28.8 14.4 83 396-478 242-338 (434)
226 PRK10246 exonuclease subunit S 43.5 6.5E+02 0.014 30.2 22.8 18 489-506 380-397 (1047)
227 PF12252 SidE: Dot/Icm substra 42.9 7.9E+02 0.017 31.0 21.1 201 294-502 1007-1318(1439)
228 PF06005 DUF904: Protein of un 41.8 2.2E+02 0.0047 24.2 10.9 58 399-458 7-64 (72)
229 KOG0240 Kinesin (SMY1 subfamil 41.2 6.4E+02 0.014 29.4 14.3 76 313-388 416-494 (607)
230 PF00435 Spectrin: Spectrin re 40.8 1.7E+02 0.0037 22.7 10.3 70 434-506 35-104 (105)
231 TIGR02977 phageshock_pspA phag 40.5 3.6E+02 0.0078 26.3 17.0 30 376-405 43-75 (219)
232 cd07648 F-BAR_FCHO The F-BAR ( 40.2 3.7E+02 0.0081 26.4 19.9 31 470-500 199-229 (261)
233 KOG0804 Cytoplasmic Zn-finger 40.0 3.6E+02 0.0079 30.5 11.7 10 106-115 79-88 (493)
234 PRK01156 chromosome segregatio 39.9 6.4E+02 0.014 29.0 24.9 14 487-500 714-727 (895)
235 PF12325 TMF_TATA_bd: TATA ele 39.9 3.1E+02 0.0067 25.4 11.6 82 399-496 19-110 (120)
236 PTZ00266 NIMA-related protein 39.4 4.3E+02 0.0093 32.3 13.0 7 370-376 512-518 (1021)
237 COG1842 PspA Phage shock prote 39.4 4.2E+02 0.009 26.7 14.3 14 338-351 68-81 (225)
238 PF12958 DUF3847: Protein of u 39.1 1.5E+02 0.0033 26.2 7.2 62 435-516 3-64 (86)
239 COG0419 SbcC ATPase involved i 38.8 7E+02 0.015 29.2 26.1 21 313-334 205-225 (908)
240 PF12777 MT: Microtubule-bindi 38.5 1.9E+02 0.0042 29.9 9.0 20 435-454 293-312 (344)
241 PRK01203 prefoldin subunit alp 38.4 2.2E+02 0.0048 26.8 8.5 73 437-509 4-114 (130)
242 COG3883 Uncharacterized protei 38.4 1.5E+02 0.0032 31.0 8.0 58 434-498 46-103 (265)
243 TIGR03545 conserved hypothetic 38.3 2.2E+02 0.0048 32.1 10.0 29 346-374 160-188 (555)
244 KOG4673 Transcription factor T 38.0 8E+02 0.017 29.6 25.8 62 389-465 537-598 (961)
245 KOG0976 Rho/Rac1-interacting s 37.6 8.7E+02 0.019 29.9 21.4 106 396-508 330-443 (1265)
246 PF01166 TSC22: TSC-22/dip/bun 37.6 42 0.00091 28.2 3.3 26 437-462 11-36 (59)
247 PF03961 DUF342: Protein of un 36.6 1.8E+02 0.004 31.0 8.8 30 444-473 379-408 (451)
248 KOG2991 Splicing regulator [RN 36.6 5.7E+02 0.012 27.5 18.3 27 347-373 108-134 (330)
249 PF10473 CENP-F_leu_zip: Leuci 36.6 3.8E+02 0.0083 25.5 11.1 26 435-460 75-100 (140)
250 PF04094 DUF390: Protein of un 36.6 8.3E+02 0.018 29.4 15.0 20 359-378 606-625 (828)
251 COG4942 Membrane-bound metallo 36.5 6.4E+02 0.014 28.1 20.5 180 342-527 40-231 (420)
252 KOG0979 Structural maintenance 36.5 9.2E+02 0.02 29.9 20.3 105 307-418 198-305 (1072)
253 PRK04778 septation ring format 36.5 6.4E+02 0.014 28.0 23.3 19 312-330 199-217 (569)
254 PF09712 PHA_synth_III_E: Poly 36.2 5.1E+02 0.011 26.8 13.8 116 374-495 161-285 (293)
255 PRK05892 nucleoside diphosphat 35.8 1.4E+02 0.0031 28.2 7.0 55 446-500 10-72 (158)
256 TIGR02231 conserved hypothetic 35.6 5.7E+02 0.012 27.8 12.3 23 447-469 145-167 (525)
257 TIGR02894 DNA_bind_RsfA transc 35.5 3E+02 0.0065 27.0 9.2 42 435-476 99-140 (161)
258 PRK13729 conjugal transfer pil 35.4 99 0.0021 34.6 6.7 50 462-511 77-126 (475)
259 PF05483 SCP-1: Synaptonemal c 35.3 8.5E+02 0.018 29.2 26.2 183 310-493 428-679 (786)
260 PF06098 Radial_spoke_3: Radia 35.2 5.4E+02 0.012 27.1 11.6 9 68-76 4-12 (291)
261 PRK11519 tyrosine kinase; Prov 35.1 7.3E+02 0.016 28.3 15.8 15 43-57 11-25 (719)
262 KOG4677 Golgi integral membran 35.0 7.4E+02 0.016 28.4 15.3 26 3-28 2-27 (554)
263 PF07058 Myosin_HC-like: Myosi 34.7 6.4E+02 0.014 27.5 16.0 16 485-500 146-161 (351)
264 PF04889 Cwf_Cwc_15: Cwf15/Cwc 34.4 1.3E+02 0.0029 30.5 7.0 12 290-301 155-166 (244)
265 PF15254 CCDC14: Coiled-coil d 33.9 7.1E+02 0.015 30.1 13.2 116 387-507 439-557 (861)
266 TIGR02680 conserved hypothetic 33.9 1E+03 0.022 29.6 27.2 37 385-421 871-907 (1353)
267 KOG0681 Actin-related protein 33.7 3.4E+02 0.0075 31.5 10.5 64 359-423 421-485 (645)
268 PF09486 HrpB7: Bacterial type 33.5 4.5E+02 0.0098 25.4 14.5 101 369-477 16-116 (158)
269 PF10473 CENP-F_leu_zip: Leuci 33.5 4.3E+02 0.0093 25.1 16.7 32 436-467 69-100 (140)
270 TIGR01000 bacteriocin_acc bact 33.1 6.3E+02 0.014 27.0 20.0 27 448-474 237-263 (457)
271 COG3096 MukB Uncharacterized p 33.0 1E+03 0.022 29.3 23.8 168 304-476 917-1109(1480)
272 PF06548 Kinesin-related: Kine 33.0 7.8E+02 0.017 28.0 13.6 62 335-411 409-470 (488)
273 KOG0249 LAR-interacting protei 32.9 9.6E+02 0.021 29.0 15.0 66 356-421 204-269 (916)
274 PF04102 SlyX: SlyX; InterPro 32.7 2.3E+02 0.005 23.4 6.9 40 369-408 12-51 (69)
275 COG4985 ABC-type phosphate tra 32.3 58 0.0013 34.0 4.1 23 485-514 224-246 (289)
276 PF04728 LPP: Lipoprotein leuc 32.2 1.4E+02 0.003 24.9 5.4 35 443-477 6-40 (56)
277 PF11180 DUF2968: Protein of u 32.2 5.5E+02 0.012 26.0 12.0 78 314-406 108-185 (192)
278 PF04380 BMFP: Membrane fusoge 32.2 86 0.0019 26.6 4.5 30 439-468 49-78 (79)
279 PRK10698 phage shock protein P 32.0 5.2E+02 0.011 25.6 19.2 40 382-421 99-138 (222)
280 PRK15136 multidrug efflux syst 32.0 6.2E+02 0.014 26.6 12.6 25 400-424 124-148 (390)
281 PRK06975 bifunctional uroporph 31.7 2.7E+02 0.006 31.6 9.5 59 362-424 379-439 (656)
282 PF10241 KxDL: Uncharacterized 31.4 3.4E+02 0.0074 23.4 8.3 54 371-424 25-78 (88)
283 PRK03598 putative efflux pump 31.2 5.6E+02 0.012 25.8 13.1 26 398-423 109-134 (331)
284 cd07647 F-BAR_PSTPIP The F-BAR 30.5 5.3E+02 0.011 25.3 17.5 80 326-409 68-147 (239)
285 CHL00118 atpG ATP synthase CF0 30.5 4.4E+02 0.0095 24.3 16.0 96 304-408 49-145 (156)
286 PF07246 Phlebovirus_NSM: Phle 30.1 6.8E+02 0.015 26.4 11.3 37 447-483 209-245 (264)
287 PRK11578 macrolide transporter 29.7 3.5E+02 0.0075 27.7 9.1 27 442-468 153-179 (370)
288 PF00170 bZIP_1: bZIP transcri 29.7 1.8E+02 0.0038 23.1 5.7 11 398-408 28-38 (64)
289 PF05010 TACC: Transforming ac 29.7 5.9E+02 0.013 25.6 17.1 116 304-422 73-194 (207)
290 COG1566 EmrA Multidrug resista 29.5 4.2E+02 0.0091 28.4 9.9 90 383-474 92-210 (352)
291 PF04977 DivIC: Septum formati 29.5 1.6E+02 0.0034 23.3 5.3 33 443-475 20-52 (80)
292 KOG0577 Serine/threonine prote 29.2 1.1E+03 0.023 28.5 25.6 108 308-421 644-753 (948)
293 PF13874 Nup54: Nucleoporin co 29.2 4.5E+02 0.0099 24.1 9.1 93 326-422 34-126 (141)
294 TIGR02338 gimC_beta prefoldin, 29.0 4E+02 0.0086 23.4 11.9 39 434-472 68-106 (110)
295 KOG2751 Beclin-like protein [S 28.3 8.4E+02 0.018 27.5 12.1 79 339-426 142-220 (447)
296 KOG4593 Mitotic checkpoint pro 27.8 1.1E+03 0.024 28.1 27.8 70 351-420 148-224 (716)
297 PF02731 SKIP_SNW: SKIP/SNW do 27.6 1.6E+02 0.0035 28.7 6.0 36 377-412 107-142 (158)
298 TIGR02449 conserved hypothetic 27.6 3.1E+02 0.0068 23.3 6.9 32 443-474 17-48 (65)
299 COG3074 Uncharacterized protei 27.5 3.5E+02 0.0075 23.9 7.3 53 368-420 4-56 (79)
300 cd03407 Band_7_4 A subgroup of 27.4 6E+02 0.013 25.1 10.0 45 308-352 191-237 (262)
301 smart00502 BBC B-Box C-termina 27.1 3.6E+02 0.0079 22.3 13.0 113 379-494 4-124 (127)
302 PRK12704 phosphodiesterase; Pr 27.1 9.2E+02 0.02 27.0 21.4 31 388-418 109-139 (520)
303 PF15619 Lebercilin: Ciliary p 27.0 6.2E+02 0.013 24.9 21.6 23 358-380 51-73 (194)
304 PF10805 DUF2730: Protein of u 27.0 3E+02 0.0066 24.4 7.2 37 441-477 36-74 (106)
305 PF08172 CASP_C: CASP C termin 26.8 6.8E+02 0.015 25.6 10.5 26 444-469 97-122 (248)
306 PF10587 EF-1_beta_acid: Eukar 26.7 63 0.0014 23.8 2.3 12 275-286 9-20 (28)
307 PF13942 Lipoprotein_20: YfhG 26.5 1.7E+02 0.0038 29.1 6.0 54 437-490 113-166 (179)
308 PF06818 Fez1: Fez1; InterPro 26.5 4.8E+02 0.01 26.4 9.2 85 384-477 19-103 (202)
309 TIGR03017 EpsF chain length de 26.4 7.5E+02 0.016 25.7 20.1 22 390-411 276-297 (444)
310 TIGR02971 heterocyst_DevB ABC 26.3 6.6E+02 0.014 25.0 12.1 26 398-423 99-124 (327)
311 TIGR01069 mutS2 MutS2 family p 26.2 1.1E+03 0.024 27.6 15.2 108 310-424 500-610 (771)
312 PRK13729 conjugal transfer pil 26.2 3.3E+02 0.0071 30.7 8.7 22 387-408 67-88 (475)
313 PF02050 FliJ: Flagellar FliJ 26.0 3.6E+02 0.0078 21.9 14.8 35 389-423 5-39 (123)
314 PRK02793 phi X174 lysis protei 26.0 4E+02 0.0087 22.4 7.7 38 370-407 17-54 (72)
315 PRK08475 F0F1 ATP synthase sub 26.0 5.6E+02 0.012 24.1 14.9 38 369-406 105-143 (167)
316 PF11365 DUF3166: Protein of u 25.9 3.3E+02 0.0072 24.6 7.2 25 437-461 66-90 (96)
317 PRK00295 hypothetical protein; 25.9 2.9E+02 0.0063 23.0 6.4 40 369-408 13-52 (68)
318 PRK02793 phi X174 lysis protei 25.6 2.5E+02 0.0055 23.6 6.1 46 364-409 4-49 (72)
319 PF12325 TMF_TATA_bd: TATA ele 25.5 3.7E+02 0.008 24.8 7.6 21 485-505 78-98 (120)
320 PF12718 Tropomyosin_1: Tropom 25.3 5.6E+02 0.012 23.9 17.9 80 338-419 51-131 (143)
321 PRK04406 hypothetical protein; 25.2 2.5E+02 0.0054 24.0 6.0 40 369-408 19-58 (75)
322 PF05278 PEARLI-4: Arabidopsis 25.1 8.3E+02 0.018 25.8 11.6 16 338-353 168-183 (269)
323 PLN03229 acetyl-coenzyme A car 25.1 1.3E+03 0.027 27.9 15.2 40 344-383 459-498 (762)
324 COG1340 Uncharacterized archae 25.0 8.7E+02 0.019 26.0 25.1 24 439-462 171-194 (294)
325 PF13863 DUF4200: Domain of un 24.9 4.6E+02 0.01 22.7 12.7 31 386-416 64-94 (126)
326 KOG0241 Kinesin-like protein [ 24.6 5.9E+02 0.013 31.9 10.7 107 359-471 564-683 (1714)
327 PRK00736 hypothetical protein; 24.2 2.9E+02 0.0064 23.0 6.2 41 368-408 12-52 (68)
328 PF07889 DUF1664: Protein of u 23.7 6.1E+02 0.013 23.8 12.3 31 440-470 89-119 (126)
329 KOG3091 Nuclear pore complex, 23.5 1.2E+03 0.025 26.9 14.7 56 325-384 337-392 (508)
330 PF03449 GreA_GreB_N: Transcri 23.5 4.5E+02 0.0099 22.2 7.8 53 446-498 8-69 (74)
331 PRK02119 hypothetical protein; 23.4 2.9E+02 0.0063 23.3 6.1 39 369-407 17-55 (73)
332 COG1340 Uncharacterized archae 23.3 9.3E+02 0.02 25.7 28.2 102 368-470 131-237 (294)
333 PRK10803 tol-pal system protei 23.2 3E+02 0.0066 27.7 7.2 57 350-406 43-99 (263)
334 PF07795 DUF1635: Protein of u 22.8 2E+02 0.0042 29.3 5.8 54 398-453 3-60 (214)
335 PF10481 CENP-F_N: Cenp-F N-te 22.6 4.2E+02 0.0091 28.4 8.2 93 436-528 21-121 (307)
336 PF04201 TPD52: Tumour protein 22.6 1.6E+02 0.0036 28.8 5.0 44 457-500 32-80 (162)
337 PF09738 DUF2051: Double stran 22.5 9.3E+02 0.02 25.5 20.7 131 337-471 127-300 (302)
338 COG4026 Uncharacterized protei 22.5 9.4E+02 0.02 25.5 12.1 42 435-476 158-199 (290)
339 KOG4807 F-actin binding protei 22.3 1.2E+03 0.026 26.6 20.2 87 406-495 389-483 (593)
340 TIGR03495 phage_LysB phage lys 21.9 5.8E+02 0.013 24.2 8.3 12 412-423 84-95 (135)
341 PF02183 HALZ: Homeobox associ 21.9 3.8E+02 0.0083 21.0 6.0 38 439-476 4-41 (45)
342 KOG0980 Actin-binding protein 21.8 1.6E+03 0.034 27.8 22.7 53 368-420 431-483 (980)
343 PRK04325 hypothetical protein; 21.6 3.2E+02 0.007 23.1 6.0 41 368-408 16-56 (74)
344 TIGR03319 YmdA_YtgF conserved 21.5 1.2E+03 0.025 26.2 19.3 156 320-490 20-185 (514)
345 PF10635 DisA-linker: DisA bac 21.3 1.8E+02 0.0039 27.7 4.9 48 341-392 7-55 (145)
346 KOG0964 Structural maintenance 21.1 1.7E+03 0.037 28.0 26.5 105 308-413 262-373 (1200)
347 TIGR01837 PHA_granule_1 poly(h 21.0 5.7E+02 0.012 23.1 7.8 33 466-498 79-112 (118)
348 cd07651 F-BAR_PombeCdc15_like 21.0 7.8E+02 0.017 23.9 18.4 79 323-404 65-143 (236)
349 PF02403 Seryl_tRNA_N: Seryl-t 20.9 5.3E+02 0.012 22.0 8.8 58 364-421 39-99 (108)
350 PF05565 Sipho_Gp157: Siphovir 20.8 5.7E+02 0.012 24.1 8.1 55 294-352 34-91 (162)
351 PLN03188 kinesin-12 family pro 20.7 1.3E+03 0.028 29.4 12.7 79 308-398 1170-1248(1320)
352 PF03961 DUF342: Protein of un 20.7 1.7E+02 0.0037 31.2 5.2 24 485-508 385-408 (451)
353 PF13118 DUF3972: Protein of u 20.7 2.5E+02 0.0053 26.6 5.6 36 373-408 90-125 (126)
354 PRK14474 F0F1 ATP synthase sub 20.6 8.8E+02 0.019 24.4 16.1 37 369-405 88-125 (250)
355 PF04102 SlyX: SlyX; InterPro 20.6 3.2E+02 0.0069 22.5 5.7 49 368-423 4-52 (69)
356 PRK04325 hypothetical protein; 20.2 4.6E+02 0.01 22.2 6.6 45 451-498 6-53 (74)
357 PRK09174 F0F1 ATP synthase sub 20.2 8.4E+02 0.018 24.0 15.2 33 373-405 82-114 (204)
358 PF13094 CENP-Q: CENP-Q, a CEN 20.2 4.7E+02 0.01 24.1 7.3 29 385-413 30-58 (160)
359 PRK13455 F0F1 ATP synthase sub 20.1 7.4E+02 0.016 23.3 13.7 35 371-405 112-147 (184)
360 KOG2189 Vacuolar H+-ATPase V0 20.0 5E+02 0.011 31.2 8.9 93 383-476 43-135 (829)
No 1
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=99.92 E-value=1.8e-24 Score=224.61 Aligned_cols=223 Identities=16% Similarity=0.107 Sum_probs=183.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q 008742 291 EKILAEKAAAKAGDAIKERENMVARL-EGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQL 369 (555)
Q Consensus 291 e~~laE~~aAKaaaaIkeRenmVa~L-E~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaR 369 (555)
-+++.|+.++|+.+. +-|=..|.+| ++--++|+.. +.+-.||..+...-+++.+++++|..++.+|+.|
T Consensus 170 ~~d~~e~~~~kdSQl-kvrlqe~~~ll~~Rve~le~~---------Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r 239 (554)
T KOG4677|consen 170 YRDYSEDWSPKDSQL-KVRLQEVRRLLKGRVESLERF---------SALRSLQDKLQLAEEAVSMHDENVITAVLIFLKR 239 (554)
T ss_pred HhhHhhhcccchhhH-HHHHHHHHHHHHhhhHHHHHH---------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 458999999999865 3332233332 3444454444 3556788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhh--------hhhhhhhhH
Q 008742 370 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRL--------AASKGVEFE 441 (555)
Q Consensus 370 LaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql--------~eL~~~r~E 441 (555)
+.++|.+.++++|++..|.|+|-+.+++++|+++++++.+ .++.|+||.+|+++..++-+- .+++++++|
T Consensus 240 ~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~--~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve 317 (554)
T KOG4677|consen 240 TLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFR--FLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVE 317 (554)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988 899999999999986643221 278899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------------
Q 008742 442 REILEAEYTFIADKIIQLEDKAKKL------------------------------------------------------- 466 (555)
Q Consensus 442 rE~~reE~q~l~~kI~qLq~ea~KL------------------------------------------------------- 466 (555)
+++.+++++.+++||.+|+.+..-|
T Consensus 318 ~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~ 397 (554)
T KOG4677|consen 318 LPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEGTFSSRVNL 397 (554)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 9999999999999999988773321
Q ss_pred ---------HHHHHHHhhhccCch--hHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccchhHHHHHHH
Q 008742 467 ---------EGNIEMTRKEIEDPT--EVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRMLSL 525 (555)
Q Consensus 467 ---------EeEI~~TKktl~~~T--ssE~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~QLERLE~~ 525 (555)
+.+|-.++..+.+.+ .+..+|++++||||++|||||+|||.++++++.|++|||||+.-
T Consensus 398 ~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~ 467 (554)
T KOG4677|consen 398 KKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEY 467 (554)
T ss_pred hhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 223333444455555 45699999999999999999999999999999999999999954
No 2
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=99.91 E-value=1.4e-23 Score=218.13 Aligned_cols=222 Identities=23% Similarity=0.231 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 008742 304 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARA 383 (555)
Q Consensus 304 aaIkeRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeS 383 (555)
+-++.+..-+..++.++.+.....+...+-+.....+|++++.+.-.+++.+...|..+..+|+.|..++|.+++.|++.
T Consensus 123 ~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~ 202 (511)
T PF09787_consen 123 QELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEER 202 (511)
T ss_pred HHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777777777777777777778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccch-----------hhhh------hhh------hhhhhh
Q 008742 384 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGI-----------YLKR------LAA------SKGVEF 440 (555)
Q Consensus 384 LAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas-----------~l~q------l~e------L~~~r~ 440 (555)
+. |.+.|.....++.+++++++++++.++..++++.+|++++. .|.. ++. +..+++
T Consensus 203 ~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~ 281 (511)
T PF09787_consen 203 PK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQ 281 (511)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHH
Confidence 99 88899999999999999999999999999999999997644 1221 222 788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------------
Q 008742 441 EREILEAEYTFIADKIIQLEDKAKKL------------------------------------------------------ 466 (555)
Q Consensus 441 ErE~~reE~q~l~~kI~qLq~ea~KL------------------------------------------------------ 466 (555)
|++.++++++.++.||.+|+.+++.+
T Consensus 282 E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~ 361 (511)
T PF09787_consen 282 ERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQ 361 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 99999999999999998877762221
Q ss_pred ------HHHHHHHhhhccCch--hHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccchhHHHHH-HHH
Q 008742 467 ------EGNIEMTRKEIEDPT--EVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRML-SLA 526 (555)
Q Consensus 467 ------EeEI~~TKktl~~~T--ssE~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~QLERLE-~~~ 526 (555)
+.||..+++.|...+ ++..|||+||++|||+||||||+||.|++|||+|.||||||+ +++
T Consensus 362 ~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 362 LKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 222222344443333 557999999999999999999999999999999999999999 554
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.82 E-value=0.035 Score=61.17 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=6.7
Q ss_pred HHHHHHHhhHHHHHHHH
Q 008742 311 NMVARLEGEKQSLEKIL 327 (555)
Q Consensus 311 nmVa~LE~EKesLeKiL 327 (555)
.-++.++.+.+.+...+
T Consensus 705 ~~l~~l~~~~~~~~~~~ 721 (1179)
T TIGR02168 705 KELEELEEELEQLRKEL 721 (1179)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444433333
No 4
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.017 Score=65.88 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhh----hhhhhhhh
Q 008742 367 LQLLAKLETANADLARALA---AAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKR----LAASKGVE 439 (555)
Q Consensus 367 laRLaKLE~e~qeLAeSLA---aAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~q----l~eL~~~r 439 (555)
++|+.+||-|++-.++-+. +.|.-.--++.+-..|++.++.+-.-+-.|-++|+|.+-+.+.... +....++.
T Consensus 405 lEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~ 484 (1118)
T KOG1029|consen 405 LEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELM 484 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHH
Confidence 4555666665555555443 3333344467888889888888888888999999998876554433 22222222
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH-HhhhhccccCCCCcc
Q 008742 440 -FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQ-KQAQVFPLNFLPGRT 515 (555)
Q Consensus 440 -~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQ-KQTqLEALSTEKnSL 515 (555)
-|++.+.+.|+.++.++.+|--+-++|...+-.+--.+.+-|....+|+.-+.. -|.++| =--+|+.||+|+.|-
T Consensus 485 isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~-ke~irq~ikdqldelskE~esk 561 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRK-KELIRQAIKDQLDELSKETESK 561 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 266666666666666666666667777777777666666666556777654432 232332 235788899888776
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.64 E-value=0.056 Score=60.09 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=5.4
Q ss_pred CCCCCCcccc
Q 008742 92 TKPKSTLTDS 101 (555)
Q Consensus 92 ~~~~~~ltd~ 101 (555)
..-+|||-|.
T Consensus 33 GsGKS~ildA 42 (1164)
T TIGR02169 33 GSGKSNIGDA 42 (1164)
T ss_pred CCCHHHHHHH
Confidence 3455666554
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.56 E-value=0.12 Score=57.62 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=3.8
Q ss_pred ccccccccCc
Q 008742 75 NVKNVYNRNN 84 (555)
Q Consensus 75 ~~~~~~~~~~ 84 (555)
.|+-|+..||
T Consensus 24 ~~~~i~G~NG 33 (1164)
T TIGR02169 24 GFTVISGPNG 33 (1164)
T ss_pred CeEEEECCCC
Confidence 3333333333
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.02 E-value=0.65 Score=54.33 Aligned_cols=184 Identities=20% Similarity=0.220 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHhHHH
Q 008742 338 ASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEM-------ETNQVAELRQQTELKEV 410 (555)
Q Consensus 338 assLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRklee-------Ek~rvaELqQQVkl~e~ 410 (555)
+..-..+...-+..++.|...+.....+.-.|+.+++.+...+-..++.-+..++. .....++++.+....+.
T Consensus 728 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1163)
T COG1196 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAER 807 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555666666655555555556666666555555555332222222 22333333333333333
Q ss_pred hHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhccCchhH
Q 008742 411 AHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKII-------QLEDKAKKLEGNIEMTRKEIEDPTEV 483 (555)
Q Consensus 411 ~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~-------qLq~ea~KLEeEI~~TKktl~~~Tss 483 (555)
.+..+..++....+..-.+. .++..++++..-+.+.+..+...|. .++.+..+++.++..+...+......
T Consensus 808 ~~~~~~~~~~~~~~~~~~~~--~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~ 885 (1163)
T COG1196 808 RLDALERELESLEQRRERLE--QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEE 885 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333332211110 1222333333333333333333333 33333333333333333334333344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCCccchhHHHHH
Q 008742 484 EIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRML 523 (555)
Q Consensus 484 E~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~QLERLE 523 (555)
..+|+++|+.+...+-+....++-+.+..+.|.-...+++
T Consensus 886 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 925 (1163)
T COG1196 886 KEELEEELRELESELAELKEEIEKLRERLEELEAKLERLE 925 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888887777777777776666666544444444
No 8
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.86 E-value=0.12 Score=50.09 Aligned_cols=181 Identities=20% Similarity=0.207 Sum_probs=92.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 008742 330 RAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKE 409 (555)
Q Consensus 330 r~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e 409 (555)
+..+.-+++.+|+..+....+.+++=.++. ..+..||..++....+.-+++...+-+....-.++..|..+++-++
T Consensus 30 ~~~~aE~e~~~l~rri~~lE~~le~~eerL----~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~ 105 (237)
T PF00261_consen 30 RAEKAEAEVASLQRRIQLLEEELERAEERL----EEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAK 105 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHCCC----CHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666655554444322222 2445666666666666666666666666666677777777777777
Q ss_pred HhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHH
Q 008742 410 VAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKR 489 (555)
Q Consensus 410 ~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~ 489 (555)
..+++.-+++.....+. ..++++.+...+-...+..+|..|+.+...+...+...--.-...+.-+..++.
T Consensus 106 ~~~ee~e~k~~E~~rkl---------~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~ 176 (237)
T PF00261_consen 106 RRAEEAERKYEEVERKL---------KVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEE 176 (237)
T ss_dssp HHHHHHHHHHHHCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 76666655554433221 112222222222222222333323222222222222222222223344566666
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCccchhHHHHH
Q 008742 490 RLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRML 523 (555)
Q Consensus 490 RLhQLTD~LIQKQTqLEALSTEKnSLv~QLERLE 523 (555)
+++.|++.|-.=-+..|..--.=..|..++.+||
T Consensus 177 ~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le 210 (237)
T PF00261_consen 177 KIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLE 210 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666666666655555555555555555
No 9
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.85 E-value=0.8 Score=48.03 Aligned_cols=43 Identities=9% Similarity=-0.017 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 008742 338 ASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADL 380 (555)
Q Consensus 338 assLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeL 380 (555)
...+.......++.++.|.+.........-..+..|+.+..++
T Consensus 204 i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 204 IEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445566666666666666666666666666666555
No 10
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.84 E-value=0.066 Score=47.96 Aligned_cols=114 Identities=24% Similarity=0.214 Sum_probs=94.1
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhh
Q 008742 350 DAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL 429 (555)
Q Consensus 350 QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l 429 (555)
..+..|.......-..+..++..+..+....++.+..||.+|+.|...-++.-+.+..++..+..++.++..++...-.+
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777778888889999999999999999999999998888888889999999999999988888766544
Q ss_pred h-hhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 430 K-RLAASK-GVEFEREILEAEYTFIADKIIQLEDKA 463 (555)
Q Consensus 430 ~-ql~eL~-~~r~ErE~~reE~q~l~~kI~qLq~ea 463 (555)
. .+.+.+ .|..++.+++.++..+..+|..|..+=
T Consensus 86 ~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN 121 (132)
T PF07926_consen 86 KAELEESEASWEEQKEQLEKELSELEQRIEDLNEQN 121 (132)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 344444 699999999999999999999887763
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.84 E-value=0.67 Score=57.57 Aligned_cols=176 Identities=22% Similarity=0.203 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhh
Q 008742 338 ASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 417 (555)
Q Consensus 338 assLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQ 417 (555)
++.+..+..++++.++..-+.-+.++||.-....|||.+. ..+|-...+.+.++.+|..+.+.++..+-.++.
T Consensus 1011 l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el-------~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~ 1083 (1930)
T KOG0161|consen 1011 LNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL-------KDLQESIEELKKQKEELDNQLKKKESELSQLQS 1083 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555544555555555555555555544 445555566778888888888888888888888
Q ss_pred hhhhhcccchhh----hhh----h----hh--------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 418 RNSNTHQTGIYL----KRL----A----AS--------------KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIE 471 (555)
Q Consensus 418 eL~d~kQkas~l----~ql----~----eL--------------~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~ 471 (555)
++.+...-.+.+ ..+ . .+ .++.+|.+-+.+++...-+.+.....-.+|.+.+++
T Consensus 1084 k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~ 1163 (1930)
T KOG0161|consen 1084 KLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQ 1163 (1930)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 887755433311 111 1 11 122223333333333332222223333556788999
Q ss_pred HHhhhccCchhH-H-------HHHHHHHHHHHHHHHHHhhhhccccCCCCccchhHH
Q 008742 472 MTRKEIEDPTEV-E-------IELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVM 520 (555)
Q Consensus 472 ~TKktl~~~Tss-E-------~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~QLE 520 (555)
.++++++..+.. | ......+.+|++.|=|.|..=--|-.||..|...+.
T Consensus 1164 ~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~ 1220 (1930)
T KOG0161|consen 1164 KLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIA 1220 (1930)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998666622 2 222334566777766666444444455555433333
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.77 E-value=0.51 Score=58.51 Aligned_cols=215 Identities=20% Similarity=0.235 Sum_probs=107.1
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHHHhH-----------hhH
Q 008742 301 KAGDAIKERENMVARLEGEKQSLEKILEERA------KQQVKEASELQTSMMETMDAFELEKQRHN-----------NTR 363 (555)
Q Consensus 301 KaaaaIkeRenmVa~LE~EKesLeKiL~er~------kQqaqEassLQ~~m~ET~QalerEqe~h~-----------~TQ 363 (555)
++.++.+.+.+|...|+-.+.-|+...-.+. .+-..+...|++++.+-.++...=...+. .+.
T Consensus 1288 ~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e 1367 (1930)
T KOG0161|consen 1288 KLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFE 1367 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888877777666544433 35566788888888776665322222222 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHhHHHhHHHHhhhhhhhcccchhhhhh-h--
Q 008742 364 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAEL-------RQQTELKEVAHEELSQRNSNTHQTGIYLKRL-A-- 433 (555)
Q Consensus 364 mEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaEL-------qQQVkl~e~~~EslKQeL~d~kQkas~l~ql-~-- 433 (555)
.+...|+..+|-+...|+.-|-.+|..++.=..+++.| +|.++.+...++..++-...+..+-..++.+ .
T Consensus 1368 ~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~ 1447 (1930)
T KOG0161|consen 1368 EEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEW 1447 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555444444444 2222222222222222222222211112221 1
Q ss_pred --hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------ccCchhHHHHHHHHHHHHHHHHHHHhhh
Q 008742 434 --ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE-------IEDPTEVEIELKRRLGQLTDHLIQKQAQ 504 (555)
Q Consensus 434 --eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt-------l~~~TssE~ELE~RLhQLTD~LIQKQTq 504 (555)
-...+..|++....+.+.+.+.+..++.....+-+.++..++. +.+.+.+..|+.+|+|+| +..
T Consensus 1448 k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~el-------ek~ 1520 (1930)
T KOG0161|consen 1448 KKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHEL-------EKE 1520 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 2334555666666666666666666555544444444444443 333334444445555444 444
Q ss_pred hccccCCCCccchhHHHH
Q 008742 505 VFPLNFLPGRTTIPVMRM 522 (555)
Q Consensus 505 LEALSTEKnSLv~QLERL 522 (555)
+-.|-.||.-|--+|+=+
T Consensus 1521 ~r~le~e~~elQ~aLeEl 1538 (1930)
T KOG0161|consen 1521 KRRLEQEKEELQAALEEL 1538 (1930)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444333333
No 13
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.74 E-value=0.17 Score=59.98 Aligned_cols=157 Identities=22% Similarity=0.292 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 008742 304 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARA 383 (555)
Q Consensus 304 aaIkeRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeS 383 (555)
..+++++..|++|+.|.+.|- +.-++ .+...+||++++..--. .-+.++.-=-.+..|+-+|++....+-=.
T Consensus 858 ~~l~~~~~~ie~l~kE~e~~q---e~~~K--k~~i~~lq~~i~~i~~e---~~q~qk~kv~~~~~~~~~l~~~i~k~~~~ 929 (1293)
T KOG0996|consen 858 KRLKELEEQIEELKKEVEELQ---EKAAK--KARIKELQNKIDEIGGE---KVQAQKDKVEKINEQLDKLEADIAKLTVA 929 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HhhhH--HHHHHHHHHHHHHhhch---hhHHhHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344566667777776666643 22233 46688899988854221 12222222334567888898888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchh-----------hhhh-hhhhhhhhHHHHHHHHHHH
Q 008742 384 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY-----------LKRL-AASKGVEFEREILEAEYTF 451 (555)
Q Consensus 384 LAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~-----------l~ql-~eL~~~r~ErE~~reE~q~ 451 (555)
+..+.|++.-=...+.+|+..++..+-.|+.|.+++.+.+.++.. +..+ .++.+++.+.+.....+..
T Consensus 930 i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~ 1009 (1293)
T KOG0996|consen 930 IKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENE 1009 (1293)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888889999999999999999999999998877652 1111 2455666666666666666
Q ss_pred HHH-HHHHHHHHHHHHHHH
Q 008742 452 IAD-KIIQLEDKAKKLEGN 469 (555)
Q Consensus 452 l~~-kI~qLq~ea~KLEeE 469 (555)
+.. +|. ++++++.+..+
T Consensus 1010 lk~~rId-~~~K~e~~~~~ 1027 (1293)
T KOG0996|consen 1010 LKAERID-IENKLEAINGE 1027 (1293)
T ss_pred HHHhhcc-HHHHHHHHHHH
Confidence 666 444 55555544333
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.72 E-value=0.45 Score=56.19 Aligned_cols=30 Identities=3% Similarity=-0.132 Sum_probs=21.2
Q ss_pred hhhhccccCCCCccchhHHHHH-HHHhhhhc
Q 008742 502 QAQVFPLNFLPGRTTIPVMRML-SLAFFHMD 531 (555)
Q Consensus 502 QTqLEALSTEKnSLv~QLERLE-~~~~fh~~ 531 (555)
..++.+|+++++++.=++-+|+ +|..++.+
T Consensus 1060 ~~~~~~l~~~~a~l~g~~k~le~qi~~l~~e 1090 (1311)
T TIGR00606 1060 EENIDLIKRNHVLALGRQKGYEKEIKHFKKE 1090 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888877777777 66666543
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.62 E-value=2.1 Score=50.35 Aligned_cols=14 Identities=36% Similarity=0.480 Sum_probs=9.6
Q ss_pred CccCCCcCCCCCCC
Q 008742 180 KNINGQDVKPQDGR 193 (555)
Q Consensus 180 k~~~~~~~~~~d~~ 193 (555)
-+||++.+...||.
T Consensus 112 Y~INg~~~~~~dI~ 125 (1163)
T COG1196 112 YYINGEKVRLKDIQ 125 (1163)
T ss_pred EEECCcEeeHHHHH
Confidence 36777777777774
No 16
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.51 E-value=1.1 Score=53.64 Aligned_cols=52 Identities=13% Similarity=0.274 Sum_probs=26.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Q 008742 312 MVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRM 364 (555)
Q Consensus 312 mVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQm 364 (555)
|+.+-.+.+.+-+.+++ .++...+.|..++.+|..+-++|+.=.+++..++.
T Consensus 1533 IL~~T~~di~ra~~L~s-~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ 1584 (1758)
T KOG0994|consen 1533 ILSRTKGDIARAENLQS-EAERARSRAEDVKGQAEDVVEALEEADVAQGEAQD 1584 (1758)
T ss_pred HHHhhhhhHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444332 34444555555666666555555555555555443
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.22 E-value=1.2 Score=52.66 Aligned_cols=28 Identities=4% Similarity=-0.008 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhHHHhHHHHhhhhhhhcc
Q 008742 397 QVAELRQQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 397 rvaELqQQVkl~e~~~EslKQeL~d~kQ 424 (555)
-+..+.+++..++..++++..++..+..
T Consensus 793 ~i~r~~~ei~~l~~qie~l~~~l~~~~~ 820 (1311)
T TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQGSDL 820 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3344455566666666666666665544
No 18
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.20 E-value=0.31 Score=48.97 Aligned_cols=123 Identities=21% Similarity=0.283 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccch
Q 008742 348 TMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGI 427 (555)
Q Consensus 348 T~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas 427 (555)
.||.+..|..++..-..++=.=|.++.++.-.+-+.+.+.| -.+.+++.||...+..+.+++.++.+...+-.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~-------~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~ 83 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALE-------IELEDLENQVSQLESEIQEIRERIKRAEEKLS 83 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567777777666666666666666666555554444444 44566777777777777788888877666555
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 428 YLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 428 ~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
......++.++.+|.+++...+..|++.|..|..+..+++.+|...+..+
T Consensus 84 ~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 84 AVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556678888888888888888888888888888777777666655553
No 19
>PRK02224 chromosome segregation protein; Provisional
Probab=96.18 E-value=2.2 Score=47.69 Aligned_cols=19 Identities=5% Similarity=-0.055 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008742 441 EREILEAEYTFIADKIIQL 459 (555)
Q Consensus 441 ErE~~reE~q~l~~kI~qL 459 (555)
.++-+.+++..+..+|..|
T Consensus 621 ~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 621 LNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 20
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.08 E-value=1.4 Score=49.18 Aligned_cols=84 Identities=21% Similarity=0.138 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhccc-chh-hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008742 382 RALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT-GIY-LKRLAASKGVEFEREILEAEYTFIADKIIQL 459 (555)
Q Consensus 382 eSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQk-as~-l~ql~eL~~~r~ErE~~reE~q~l~~kI~qL 459 (555)
+-++..|..++....++.+|.+||+.++..+.+--+.|...... ... ...+.+++.++.+...+.++++.-...+.+|
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL 473 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQL 473 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888889999999999999999998777766654432 222 2345677788777777788888877777777
Q ss_pred HHHHHH
Q 008742 460 EDKAKK 465 (555)
Q Consensus 460 q~ea~K 465 (555)
..+..+
T Consensus 474 ~~e~e~ 479 (594)
T PF05667_consen 474 VKELEK 479 (594)
T ss_pred HHHHHh
Confidence 777433
No 21
>PRK02224 chromosome segregation protein; Provisional
Probab=96.07 E-value=3.3 Score=46.31 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhh
Q 008742 374 ETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 420 (555)
Q Consensus 374 E~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~ 420 (555)
+.....+.+.+..++..+..-..++.+++..+..+....+.|.+++.
T Consensus 257 ~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~ 303 (880)
T PRK02224 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG 303 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444444455555555544444444444443
No 22
>PRK11637 AmiB activator; Provisional
Probab=96.04 E-value=0.8 Score=47.70 Aligned_cols=50 Identities=24% Similarity=0.209 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhh
Q 008742 370 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 419 (555)
Q Consensus 370 LaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL 419 (555)
+..|+.+...+...+...+..+..-..+++.++.+++.++..++.++..+
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555556555555555555444433
No 23
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.01 E-value=3 Score=45.31 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCcc
Q 008742 485 IELKRRLGQLTDHLIQKQAQVFPLNFLPGRT 515 (555)
Q Consensus 485 ~ELE~RLhQLTD~LIQKQTqLEALSTEKnSL 515 (555)
.+|-.-|+||+.-.-+=..+.+....|-.-+
T Consensus 368 ~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~ 398 (522)
T PF05701_consen 368 SELPKALQQLSSEAEEAKKEAEEAKEEVEKA 398 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665555555555555554433
No 24
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.95 E-value=0.51 Score=47.97 Aligned_cols=151 Identities=19% Similarity=0.148 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHh----hhhhhhcccchhhhh-hhhhh
Q 008742 362 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS----QRNSNTHQTGIYLKR-LAASK 436 (555)
Q Consensus 362 TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslK----QeL~d~kQkas~l~q-l~eL~ 436 (555)
.+.....++..|.....-|...+..+...+..=..+-+.|..++..++......- .+|..+++. +.. -..+.
T Consensus 150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~e---L~~~~~~i~ 226 (325)
T PF08317_consen 150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQE---LAEQKEEIE 226 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHH---HHHHHHHHH
Confidence 3344445566666666666666666666665555555555555555444333210 111111110 111 11344
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccCchhHH-HHHHHHHHHHHHHHHHHhhhhccccCCC
Q 008742 437 GVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE---IEDPTEVE-IELKRRLGQLTDHLIQKQAQVFPLNFLP 512 (555)
Q Consensus 437 ~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt---l~~~TssE-~ELE~RLhQLTD~LIQKQTqLEALSTEK 512 (555)
..+.+.+.++.+...+..+|..+..+.++++++|..+.+. .-..|..| .+|+.+++. +|++|.+.-++.+.
T Consensus 227 ~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~-----Le~~~gw~~~~~~~ 301 (325)
T PF08317_consen 227 AKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDA-----LEKLTGWKIVSISG 301 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HHHHHCcEEEEEeC
Confidence 4555555666666666666666666677777777766654 34567777 888888875 58899999988888
Q ss_pred CccchhHH
Q 008742 513 GRTTIPVM 520 (555)
Q Consensus 513 nSLv~QLE 520 (555)
+.|+|..-
T Consensus 302 ~~l~~~~~ 309 (325)
T PF08317_consen 302 STLEFRYK 309 (325)
T ss_pred CeEEEEEc
Confidence 87765543
No 25
>PRK03918 chromosome segregation protein; Provisional
Probab=95.86 E-value=2.8 Score=46.62 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCcc
Q 008742 485 IELKRRLGQLTDHLIQKQAQVFPLNFLPGRT 515 (555)
Q Consensus 485 ~ELE~RLhQLTD~LIQKQTqLEALSTEKnSL 515 (555)
.+|+.++..++..+-..+.+++.|..+-..+
T Consensus 669 ~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 669 LELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544443333
No 26
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.83 E-value=2.1 Score=42.09 Aligned_cols=115 Identities=23% Similarity=0.229 Sum_probs=63.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHH---HHHHHHH
Q 008742 293 ILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEA-----------SELQTSMMETMDA---FELEKQR 358 (555)
Q Consensus 293 ~laE~~aAKaaaaIkeRenmVa~LE~EKesLeKiL~er~kQqaqEa-----------ssLQ~~m~ET~Qa---lerEqe~ 358 (555)
.|+.|+|.--. =|-.|+.+...|+..+..+........ ..|+..+..+-.. +..|...
T Consensus 8 ~LNdRla~YIe--------kVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~ 79 (312)
T PF00038_consen 8 SLNDRLASYIE--------KVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDN 79 (312)
T ss_dssp HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------HHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhh
Confidence 56667665332 255677777777777776666543333 3333333332221 5555555
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHH
Q 008742 359 HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 415 (555)
Q Consensus 359 h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~Esl 415 (555)
+...-.+|=.|+...-..+..|=.-+....+.++++...-.+|+.++..++-.++-+
T Consensus 80 l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl 136 (312)
T PF00038_consen 80 LKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL 136 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 555555555555555555556655666666777777777777777777776666533
No 27
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.79 E-value=3.3 Score=50.60 Aligned_cols=80 Identities=6% Similarity=0.026 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccchhHH
Q 008742 444 ILEAEYTFIADKIIQLEDKAKKLEGNIE---MTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVM 520 (555)
Q Consensus 444 ~~reE~q~l~~kI~qLq~ea~KLEeEI~---~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~QLE 520 (555)
.++.++..+...+..++.++..++..+. .++.-...+.-+-.||+..|.+..+.+=++++++..|-.+-+.+--.+.
T Consensus 394 eLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~le 473 (1486)
T PRK04863 394 ELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHS 473 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555444444443 3443344455556778888888888888888888887777766655555
Q ss_pred HHH
Q 008742 521 RML 523 (555)
Q Consensus 521 RLE 523 (555)
.++
T Consensus 474 ql~ 476 (1486)
T PRK04863 474 QFE 476 (1486)
T ss_pred HHH
Confidence 444
No 28
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=3.7 Score=47.95 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=15.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008742 311 NMVARLEGEKQSLEKILEERAKQQVKEASELQTSMM 346 (555)
Q Consensus 311 nmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ 346 (555)
.|.+.-..|++.+.+ +-.+.+|-++|+..|+.+..
T Consensus 420 em~~Qk~reqe~iv~-~nak~~ql~~eletLn~k~q 454 (1118)
T KOG1029|consen 420 EMLNQKNREQEWIVY-LNAKKKQLQQELETLNFKLQ 454 (1118)
T ss_pred HHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443 33444444555555554444
No 29
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.72 E-value=3.3 Score=43.54 Aligned_cols=28 Identities=7% Similarity=-0.100 Sum_probs=12.3
Q ss_pred HHHHHHhhhhccccCCCCccchhHHHHH
Q 008742 496 DHLIQKQAQVFPLNFLPGRTTIPVMRML 523 (555)
Q Consensus 496 D~LIQKQTqLEALSTEKnSLv~QLERLE 523 (555)
+-|-+-...++.+..++..+....++.+
T Consensus 379 ~~l~~l~~~l~~~~~~~~~~~ke~~~~~ 406 (562)
T PHA02562 379 EELAKLQDELDKIVKTKSELVKEKYHRG 406 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 30
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.62 E-value=2.7 Score=47.68 Aligned_cols=89 Identities=22% Similarity=0.264 Sum_probs=50.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 315 RLEGEKQSLEKILEERAKQQVKEASELQTS---MMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKL 391 (555)
Q Consensus 315 ~LE~EKesLeKiL~er~kQqaqEassLQ~~---m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkl 391 (555)
+||.|..+|.-.|...- |.-+ +|+.+ +......++-|.+..++=-.+.-.|++.|...++.==.++...+|+|
T Consensus 422 rLE~dvkkLraeLq~~R-q~E~---ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL 497 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSR-QSEQ---ELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHhhh-hhHH---HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655554322 2222 23333 22222234444443333333455577777777777777778888888
Q ss_pred HHHHhHHHHHHHHHHh
Q 008742 392 EMETNQVAELRQQTEL 407 (555)
Q Consensus 392 eeEk~rvaELqQQVkl 407 (555)
.+|.++-+.|+.|+..
T Consensus 498 ~eE~~~R~~lEkQL~e 513 (697)
T PF09726_consen 498 AEERRQRASLEKQLQE 513 (697)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777777777653
No 31
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.53 E-value=5.2 Score=49.02 Aligned_cols=21 Identities=10% Similarity=-0.110 Sum_probs=12.5
Q ss_pred HHHHHhhhhccccCCCCccch
Q 008742 497 HLIQKQAQVFPLNFLPGRTTI 517 (555)
Q Consensus 497 ~LIQKQTqLEALSTEKnSLv~ 517 (555)
.+++-.+.+|.|+.++++++-
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~ 579 (1486)
T PRK04863 559 LQEELEARLESLSESVSEARE 579 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455566777777766643
No 32
>PRK03918 chromosome segregation protein; Provisional
Probab=95.35 E-value=6 Score=44.08 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCCCccchh
Q 008742 487 LKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIP 518 (555)
Q Consensus 487 LE~RLhQLTD~LIQKQTqLEALSTEKnSLv~Q 518 (555)
|+..+.+|....-..+..+..|-.++..+.-.
T Consensus 389 l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~ 420 (880)
T PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKE 420 (880)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455444445555556666555555333
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.20 E-value=6.8 Score=43.83 Aligned_cols=173 Identities=21% Similarity=0.261 Sum_probs=91.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 313 VARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLE 392 (555)
Q Consensus 313 Va~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkle 392 (555)
|..|+.++++|+..|....+. ...+..-...+....+.+..|...-.....+...|+.+||.+...|..-+.-.++.++
T Consensus 166 ~~~l~~~v~~l~~eL~~~~ee-~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~ 244 (546)
T PF07888_consen 166 VEQLREEVERLEAELEQEEEE-MEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELD 244 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777766666554442 2223333334445566778888877777888889999999999888776643333333
Q ss_pred HHHhHHHHHHHHHHhHHHhHHHHhhhhhh----hcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 393 METNQVAELRQQTELKEVAHEELSQRNSN----THQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEG 468 (555)
Q Consensus 393 eEk~rvaELqQQVkl~e~~~EslKQeL~d----~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEe 468 (555)
.-+....++.+. -..++++|.+ +++.-+ .....+-|.+.++++++.+..++...+.++..|..
T Consensus 245 ~lk~~~~elEq~-------~~eLk~rLk~~~~~~~~~~~------~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~ 311 (546)
T PF07888_consen 245 KLKELKAELEQL-------EAELKQRLKETVVQLKQEET------QAQQLQQENEALKEQLRSAQEQLQASQQEAELLRK 311 (546)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222211 1122233332 222111 12233445566777777777777766666655555
Q ss_pred HHHHHhhh----c--cCchhHH-HHHHHHHHHHHHHHH
Q 008742 469 NIEMTRKE----I--EDPTEVE-IELKRRLGQLTDHLI 499 (555)
Q Consensus 469 EI~~TKkt----l--~~~TssE-~ELE~RLhQLTD~LI 499 (555)
|+..+.+. | -|.++.| ..|..+|...+-.|.
T Consensus 312 EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lk 349 (546)
T PF07888_consen 312 ELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELK 349 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 54332221 1 1222333 455555555554443
No 34
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.02 E-value=10 Score=45.01 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 441 EREILEAEYTFIADKIIQLEDKAKK 465 (555)
Q Consensus 441 ErE~~reE~q~l~~kI~qLq~ea~K 465 (555)
+.+.+++....+...+..++.+..+
T Consensus 477 ~~~~a~~~~~~~~~~~~~~~~~~~~ 501 (1201)
T PF12128_consen 477 RLEQAQEQQNQAQQAVEELQAEEQE 501 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 35
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.96 E-value=4.4 Score=40.43 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhh----cccchhhhhhhhhhhhhhHHHH
Q 008742 369 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT----HQTGIYLKRLAASKGVEFEREI 444 (555)
Q Consensus 369 RLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~----kQkas~l~ql~eL~~~r~ErE~ 444 (555)
+...++.....+...+...+..+..-..+++.++++++.++..+..++.++..+ +.+..+-. ++...+.+...
T Consensus 131 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~---~~~~~~~~~~~ 207 (423)
T TIGR01843 131 QQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRL---ELLELERERAE 207 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHH
Confidence 333334444444444444444444444555555555555555555555555444 22222111 22233444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008742 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 475 (555)
Q Consensus 445 ~reE~q~l~~kI~qLq~ea~KLEeEI~~TKk 475 (555)
++.++..+..++.+++.+...++.++.....
T Consensus 208 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~ 238 (423)
T TIGR01843 208 AQGELGRLEAELEVLKRQIDELQLERQQIEQ 238 (423)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555554433
No 36
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.85 E-value=7.3 Score=42.42 Aligned_cols=39 Identities=36% Similarity=0.299 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 008742 291 EKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEE 329 (555)
Q Consensus 291 e~~laE~~aAKaaaaIkeRenmVa~LE~EKesLeKiL~e 329 (555)
++..|..-|..|..+...-...|+.|..|+..|-..|..
T Consensus 152 ~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~ 190 (522)
T PF05701_consen 152 AKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLES 190 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666677777777777777776666665554
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.82 E-value=12 Score=44.62 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=21.8
Q ss_pred HHHhHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008742 356 KQRHNNTRMEALQLLA----KLETANADLARALAAAQKKLEMETNQ 397 (555)
Q Consensus 356 qe~h~~TQmEalaRLa----KLE~e~qeLAeSLAaAQRkleeEk~r 397 (555)
++.|+..+||..++.. .+......+-..++.++..+.+++++
T Consensus 709 ~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~ 754 (1201)
T PF12128_consen 709 KEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKE 754 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666644433 33444445555555566666555533
No 38
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.58 E-value=10 Score=43.99 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=46.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 008742 434 ASKGVEFEREILEAEYTFIADKIIQLEDK------AKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFP 507 (555)
Q Consensus 434 eL~~~r~ErE~~reE~q~l~~kI~qLq~e------a~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEA 507 (555)
.++.++.+.+..++++.++..++..++.. .+.|+.++...+.+ .+..+.|+++=|.-| .-
T Consensus 515 ~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee---~~kaq~EVERLl~~L-----------~~ 580 (775)
T PF10174_consen 515 EIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREE---SEKAQAEVERLLDIL-----------RE 580 (775)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-----------HH
Confidence 45556666666666666666666554433 22244444333322 234456666544322 23
Q ss_pred ccCCCCccchhHHHHHHH---Hhhhhc
Q 008742 508 LNFLPGRTTIPVMRMLSL---AFFHMD 531 (555)
Q Consensus 508 LSTEKnSLv~QLERLE~~---~~fh~~ 531 (555)
+=.||+++..++-+|++. +.+|..
T Consensus 581 ~E~EK~~ke~ki~~LekeLek~~~~~~ 607 (775)
T PF10174_consen 581 AENEKNDKEKKIGELEKELEKAQMHLA 607 (775)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhccchh
Confidence 346888888888888843 444443
No 39
>PRK09039 hypothetical protein; Validated
Probab=94.45 E-value=7 Score=40.63 Aligned_cols=52 Identities=21% Similarity=0.141 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhh
Q 008742 371 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (555)
Q Consensus 371 aKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~ 422 (555)
..++...+.|...|+...-.+.+.-.+|.-|++|++.++..+..+...|...
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666666666666666666666666666666655444444333
No 40
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.41 E-value=2.7 Score=47.19 Aligned_cols=154 Identities=15% Similarity=0.200 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhc
Q 008742 344 SMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (555)
Q Consensus 344 ~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~k 423 (555)
++++++.-+..|++.|.+--.+--+ .+....+.|++-|...-..-.....+|-+|.-++ ..|+..+....
T Consensus 1 ql~e~l~qlq~Erd~ya~~lk~e~a---~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL-------~eLk~q~~~~~ 70 (617)
T PF15070_consen 1 QLMESLKQLQAERDQYAQQLKEESA---QWQQRMQQMSEEVRTLKEEKEHDISRVQELERSL-------SELKNQMAEPP 70 (617)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhcccC
Confidence 3678888888888888765444322 3566677777777766666666666666665554 34555444443
Q ss_pred ccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHh
Q 008742 424 QTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQ-LEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQ 502 (555)
Q Consensus 424 Qkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~q-Lq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQ 502 (555)
...+|..-...-..++.|.+-++.++..+.+++.. +++. +.+....... -..=.|||.+|+.+-+.+...+
T Consensus 71 ~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~n-----e~Ls~L~~Eq---EerL~ELE~~le~~~e~~~D~~ 142 (617)
T PF15070_consen 71 PPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENN-----EQLSRLNQEQ---EERLAELEEELERLQEQQEDRQ 142 (617)
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33222111111123444444455555555544322 1111 0111111110 0001688888888888888888
Q ss_pred hhhccccCCCCcc
Q 008742 503 AQVFPLNFLPGRT 515 (555)
Q Consensus 503 TqLEALSTEKnSL 515 (555)
-+||.|.++|.++
T Consensus 143 kLLe~lqsdk~t~ 155 (617)
T PF15070_consen 143 KLLEQLQSDKATA 155 (617)
T ss_pred HHHhhhcccchHH
Confidence 8999999999875
No 41
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.25 E-value=16 Score=44.35 Aligned_cols=143 Identities=17% Similarity=0.174 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhh---------------
Q 008742 368 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRL--------------- 432 (555)
Q Consensus 368 aRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql--------------- 432 (555)
.+...+|.+.+.+=+.|.....+...-.+.....+....-++...+.+..+++++.-.-.-+..+
T Consensus 391 ~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l 470 (1293)
T KOG0996|consen 391 KKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSL 470 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777776667777777777777777777777666654322111111
Q ss_pred -hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 008742 433 -AASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNF 510 (555)
Q Consensus 433 -~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALST 510 (555)
....+.+.|.+.+++++-.+..++...+.+++=.+.++.++...++.-+..=.||+.+|.++-.+++-++|-|=++-.
T Consensus 471 ~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~ 549 (1293)
T KOG0996|consen 471 KQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKE 549 (1293)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123455556666666666666666666666666778888777766444444478888888888888888877655433
No 42
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.23 E-value=5.6 Score=44.47 Aligned_cols=120 Identities=21% Similarity=0.287 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchh----hh-hhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008742 384 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY----LK-RLAASKGVEFEREILEAEYTFIADKIIQ 458 (555)
Q Consensus 384 LAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~----l~-ql~eL~~~r~ErE~~reE~q~l~~kI~q 458 (555)
++.|-+-+++-.+..+.++..+.-++..+++|+.++.+..+...+ +. .+..+-.++-|..+++..+..+.+.+.-
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~ 173 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKR 173 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344555555666667777777777777777777777776443322 11 1234556677888899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhh
Q 008742 459 LEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQA 503 (555)
Q Consensus 459 Lq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQT 503 (555)
|+.+-..|..+|.++|+.+..-|-.-++++++...|.+-|=-.+.
T Consensus 174 Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~ 218 (546)
T KOG0977|consen 174 LKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKR 218 (546)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 999999999999999999988888788888888888777654443
No 43
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.17 E-value=4.1 Score=46.36 Aligned_cols=63 Identities=21% Similarity=0.195 Sum_probs=45.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhccCchhHHHHHHHHHHHHHHHH
Q 008742 436 KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEM----TRKEIEDPTEVEIELKRRLGQLTDHL 498 (555)
Q Consensus 436 ~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~----TKktl~~~TssE~ELE~RLhQLTD~L 498 (555)
++|..|.+.++..++.+...|.+++.+..+.+..++- .++...-+..+...+..=|.|.++.+
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I 701 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEI 701 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 6788888888999999999999998888877666652 12222333456677888888887653
No 44
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.15 E-value=2.1 Score=42.33 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=61.4
Q ss_pred HHHHHHHHHhHHHhHHHH---hhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008742 398 VAELRQQTELKEVAHEEL---SQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 474 (555)
Q Consensus 398 vaELqQQVkl~e~~~Esl---KQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TK 474 (555)
+.+|+.|+.+..-.+..+ +.++-|++..+..++. +...+--....++.|.+.|..+|+.|+.+--|+.++++-++
T Consensus 45 ~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE--~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk 122 (193)
T PF14662_consen 45 ITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEE--ENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLK 122 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 445666666665555544 5566666655443322 11223334455577888888888888888888888888877
Q ss_pred hhccCchhHHHHHHHHHHHHHHHHHHH
Q 008742 475 KEIEDPTEVEIELKRRLGQLTDHLIQK 501 (555)
Q Consensus 475 ktl~~~TssE~ELE~RLhQLTD~LIQK 501 (555)
+....-.+-=..|.+-+|.-+..+-|+
T Consensus 123 ~~~~eL~~~~~~Lq~Ql~~~e~l~~~~ 149 (193)
T PF14662_consen 123 KRSKELATEKATLQRQLCEFESLICQR 149 (193)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 765333332256666666665555444
No 45
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.14 E-value=8.9 Score=40.36 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-HhhHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 335 VKEASELQTSMMETMDAFELEKQRH-NNTRM-------EALQLLAKLETANADLARALAAAQ 388 (555)
Q Consensus 335 aqEassLQ~~m~ET~QalerEqe~h-~~TQm-------EalaRLaKLE~e~qeLAeSLAaAQ 388 (555)
-+|=.-+=|+++--|++++.|++.+ ++... ....++.+|-.+.++|+..|.+-|
T Consensus 72 EqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~Eq 133 (310)
T PF09755_consen 72 EQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQ 133 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444456677777777777777766 23333 234577777777777777777655
No 46
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.13 E-value=6.2 Score=38.53 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHH---HHHHHHHhHhhHHHHHHHHHHHHHHH
Q 008742 304 DAIKERENMVARLEGEKQSLEKILEERAK---QQVKEASELQTSMMETMDA---FELEKQRHNNTRMEALQLLAKLETAN 377 (555)
Q Consensus 304 aaIkeRenmVa~LE~EKesLeKiL~er~k---QqaqEassLQ~~m~ET~Qa---lerEqe~h~~TQmEalaRLaKLE~e~ 377 (555)
.-|+.-..-...+++|..+|.+-+..-+. ..-.-+...++++.+...+ .++-....-+--+..-.|+..||...
T Consensus 22 ~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l 101 (237)
T PF00261_consen 22 EKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQL 101 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444444445555555555444433332 1111233444444444443 33333444445556667999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccch
Q 008742 378 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGI 427 (555)
Q Consensus 378 qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas 427 (555)
..+-..+.-+.++|++=..+...++..+.-++.-++.+-.++..+.....
T Consensus 102 ~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~ 151 (237)
T PF00261_consen 102 KEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELK 151 (237)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence 99999999999999999999999998888888888888888888776533
No 47
>PRK09039 hypothetical protein; Validated
Probab=94.02 E-value=2.1 Score=44.40 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=30.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 008742 331 AKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLE 374 (555)
Q Consensus 331 ~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE 374 (555)
-....++++.|+.++-++=+.+.+|+..-..++.+..+-.+.++
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS 91 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33456778888888888777788887777777666554444443
No 48
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.02 E-value=4.1 Score=42.14 Aligned_cols=141 Identities=18% Similarity=0.099 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhh----hhhhhcccchhhhhhhhhhhhhhHHHHHHH
Q 008742 372 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ----RNSNTHQTGIYLKRLAASKGVEFEREILEA 447 (555)
Q Consensus 372 KLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQ----eL~d~kQkas~l~ql~eL~~~r~ErE~~re 447 (555)
.|......|.+-++.+...+..=..+.+.|+.++..++...+.... +|..++..- .....++...+.+.+.++.
T Consensus 155 ~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l--~~~~~ei~~~~~~l~e~~~ 232 (312)
T smart00787 155 GLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKL--KKLLQEIMIKVKKLEELEE 232 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555554443333332211 111111100 0111234445556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccCchhHH-HHHHHHHHHHHHHHHHHhhhhccccCCCCccchhH
Q 008742 448 EYTFIADKIIQLEDKAKKLEGNIEMTRKE---IEDPTEVE-IELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPV 519 (555)
Q Consensus 448 E~q~l~~kI~qLq~ea~KLEeEI~~TKkt---l~~~TssE-~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~QL 519 (555)
+++.+...|.....+.+.++.+|..+.+. .-..|..| ..|+.+++ ++|++|.+-=.+...+.|.+..
T Consensus 233 ~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~-----~Le~l~g~~~~~~~~~~l~~~~ 303 (312)
T smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLK-----LLQSLTGWKITKLSGNTLSMTY 303 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-----HHHHHhCCeeEeccCCeEEEEe
Confidence 77777777777777777788888877765 35677888 78888886 5699999988888888776643
No 49
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.87 E-value=12 Score=45.77 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=16.8
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHHHHHH
Q 008742 472 MTRKEIEDPTEVEIELKRRLGQLTDHLIQK 501 (555)
Q Consensus 472 ~TKktl~~~TssE~ELE~RLhQLTD~LIQK 501 (555)
..-+.|+.+...=.-||+||+++++|.=+|
T Consensus 1721 ~~~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1721 RNEQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 333334333332256788888888875443
No 50
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=93.85 E-value=7 Score=38.18 Aligned_cols=121 Identities=25% Similarity=0.302 Sum_probs=63.0
Q ss_pred HHHHHH--Hhhhh-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHhHhhHHHH
Q 008742 293 ILAEKA--AAKAG-DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQT---SMMETMDAFELEKQRHNNTRMEA 366 (555)
Q Consensus 293 ~laE~~--aAKaa-aaIkeRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~---~m~ET~QalerEqe~h~~TQmEa 366 (555)
.||++. ||+|+ +||.-+..||+.|+.|....+..+.+....=++.-..++. .+.+..+.+..=+...+.++.
T Consensus 46 ~lA~kA~qaA~aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~-- 123 (188)
T PF05335_consen 46 QLADKAAQAAKAAEAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQA-- 123 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 577775 45666 8999999999999999999888887765533332222211 111111111111112222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhh
Q 008742 367 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 417 (555)
Q Consensus 367 laRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQ 417 (555)
-+.-.+.-.......|..-..-++.=++||+.|..|+...+..++..|+
T Consensus 124 --nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 124 --NLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222222222222233444467788888888777776665554
No 51
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=93.85 E-value=7.7 Score=39.85 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccch
Q 008742 438 VEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTI 517 (555)
Q Consensus 438 ~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~ 517 (555)
.+.+.+.+.+++...+.++...+.+..++++.+...+..+...+..-.+|+..+......|-.-+..+.+|++|+..-.-
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~ 298 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSE 298 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHH
Confidence 33455666677778888888888888888888888888876666656889999999999999999999999999999988
Q ss_pred hHHHHH-HHHhhhhc
Q 008742 518 PVMRML-SLAFFHMD 531 (555)
Q Consensus 518 QLERLE-~~~~fh~~ 531 (555)
++..|+ ++..+=-|
T Consensus 299 ~~~~l~~~~~~l~GD 313 (344)
T PF12777_consen 299 QIEELEEQLKNLVGD 313 (344)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHH
Confidence 888887 44444333
No 52
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=93.79 E-value=5.3 Score=39.71 Aligned_cols=143 Identities=15% Similarity=0.084 Sum_probs=72.1
Q ss_pred HHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcc--cchhhhhhh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 390 KLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ--TGIYLKRLA-ASKGVEFEREILEAEYTFIADKIIQLEDKAKKL 466 (555)
Q Consensus 390 kleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQ--kas~l~ql~-eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KL 466 (555)
.+......++.|+.++..++.....+.+.+..=-. ++|+..+-. ..+..+...+.++++++.+..++.....+....
T Consensus 136 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 215 (301)
T PF14362_consen 136 QIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALDAQ 215 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 34444444555556666655555555555444221 334433321 233333344444444444444433332222211
Q ss_pred HHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccchhHHHHHHHHh-hhhccccccchhHHHHHH
Q 008742 467 EGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRMLSLAF-FHMDGIIETSSLSIITLL 545 (555)
Q Consensus 467 EeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~QLERLE~~~~-fh~~~~~~~~~~~~~~~~ 545 (555)
.. .|+.+|++.--.++...+.-....+.+ |.|++-+.. --.++.+-.-++-|+.|+
T Consensus 216 ~~--------------------~~~~~l~~~~~~~~a~~~~~~~~~~G~---l~R~~Al~~L~~~~~~~~~~~~~i~llf 272 (301)
T PF14362_consen 216 IA--------------------ARKARLDEARQAKVAEFQAIISANDGF---LARLEALWELTKEDPSALLASLFIFLLF 272 (301)
T ss_pred HH--------------------HHHHHHHHHHHHHHHHHhHhhccCCCH---HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 11 566666666666666555555677777 778773322 233344444456666677
Q ss_pred HHHhhhhhcC
Q 008742 546 LFMERMVIFF 555 (555)
Q Consensus 546 ~~~~~~~~~~ 555 (555)
+++|-+.|||
T Consensus 273 i~iel~Pv~~ 282 (301)
T PF14362_consen 273 IAIELLPVLF 282 (301)
T ss_pred HHHHHHHHHH
Confidence 7778777664
No 53
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.77 E-value=5.1 Score=44.89 Aligned_cols=141 Identities=24% Similarity=0.240 Sum_probs=75.4
Q ss_pred HhHHHHHHHHHHHHH---HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHh
Q 008742 334 QVKEASELQTSMMET---MDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEM---ETNQVAELRQQTEL 407 (555)
Q Consensus 334 qaqEassLQ~~m~ET---~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRklee---Ek~rvaELqQQVkl 407 (555)
+.+|+.+||.++.++ +++++.|...+...-....+....++.++.++...+..-.|-++. --..++.|+..|..
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~ 405 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEA 405 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 334444444443332 223444444444444455566666777777777777766655432 22445666666666
Q ss_pred HHHhHHHHhhhhhhhcccchhhhhhhhh-----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008742 408 KEVAHEELSQRNSNTHQTGIYLKRLAAS-----------KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 476 (555)
Q Consensus 408 ~e~~~EslKQeL~d~kQkas~l~ql~eL-----------~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt 476 (555)
....+..|.++...++... ++.+..| ...-.|...++++++.+...|.+-....++|..+++.+.++
T Consensus 406 s~~rl~~L~~qWe~~R~pL--~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 406 SEQRLVELAQQWEKHRAPL--IEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6666666666665554322 1112111 12223445555555555555555555566677777777666
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.70 E-value=20 Score=43.02 Aligned_cols=178 Identities=20% Similarity=0.246 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHH------HHHHHHHhHhhHHHHHHHHHHHHHH
Q 008742 305 AIKERENMVARLEGEKQSLEKILEERAKQQ--VKEASELQTSMMETMDA------FELEKQRHNNTRMEALQLLAKLETA 376 (555)
Q Consensus 305 aIkeRenmVa~LE~EKesLeKiL~er~kQq--aqEassLQ~~m~ET~Qa------lerEqe~h~~TQmEalaRLaKLE~e 376 (555)
.+..-.+.|..++.++..|.|-+.+-.+.= -..++.|.++.++.--. .+.+++ +..++.+
T Consensus 222 ~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~q------------l~~~~~~ 289 (1074)
T KOG0250|consen 222 SLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQ------------LNNQEEE 289 (1074)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
Confidence 344455667777777777777766655421 11222222222211111 122221 2334445
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhh-hhhhhhhhHHHHHHHHHHHHHHH
Q 008742 377 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRL-AASKGVEFEREILEAEYTFIADK 455 (555)
Q Consensus 377 ~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql-~eL~~~r~ErE~~reE~q~l~~k 455 (555)
..-.=+.++..|.+++...-++.++++.+...++....++.+-.- ....+..+ ..+..++-|..-++++|...+..
T Consensus 290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~---~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~ 366 (1074)
T KOG0250|consen 290 IKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDA---QDEEIEEARKDLDDLRREVNDLKEEIREIENS 366 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666666666666666666665555544333211 11222222 24556666777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCchhHH-HHHHHHHHHHHHH
Q 008742 456 IIQLEDKAKKLEGNIEMTRKEIEDPTEVE-IELKRRLGQLTDH 497 (555)
Q Consensus 456 I~qLq~ea~KLEeEI~~TKktl~~~TssE-~ELE~RLhQLTD~ 497 (555)
|..++....-++..|.-.++...+.+.++ .|.++-+.+|+.-
T Consensus 367 i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~e 409 (1074)
T KOG0250|consen 367 IRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKE 409 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 77777776666666666666553333333 6666666666543
No 55
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.25 E-value=23 Score=44.61 Aligned_cols=217 Identities=17% Similarity=0.171 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 008742 305 AIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTS-MMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARA 383 (555)
Q Consensus 305 aIkeRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~-m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeS 383 (555)
-|+.-+.-++.|+.|+..|-..|...+-+. ..+..+-. +..++...++|...-+.-...+=.=+++=+...+.++.-
T Consensus 655 ~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~--~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~e 732 (1822)
T KOG4674|consen 655 NLKKLQEDFDSLQKEVTAIRSQLEKLKNEL--NLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQE 732 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555444444433322 23333333 336677777777755555556666778888899999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhh-hhhhhhhhhHHHHHH-HHHHHHHHHHHHHHH
Q 008742 384 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKR-LAASKGVEFEREILE-AEYTFIADKIIQLED 461 (555)
Q Consensus 384 LAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~q-l~eL~~~r~ErE~~r-eE~q~l~~kI~qLq~ 461 (555)
|..+-.++..=...|.-|.|.-++.+.+-+.|.+++..|.....++.. +..|+....++++-+ +.-+....+|..|..
T Consensus 733 L~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~ 812 (1822)
T KOG4674|consen 733 LLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELER 812 (1822)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877666553 345666656666555 334555667777777
Q ss_pred HHHHHHHHHHHHhhhc---cCchhHH-HHHHHHHHHHHHHHHHHhhhhccccCCCCccchhHHHHH
Q 008742 462 KAKKLEGNIEMTRKEI---EDPTEVE-IELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRML 523 (555)
Q Consensus 462 ea~KLEeEI~~TKktl---~~~TssE-~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~QLERLE 523 (555)
+.+++..+.+-....+ +..=.++ .+.-+++.+++-.+-.=+|.|=.+.|+=+.|.+++.-|+
T Consensus 813 el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~ 878 (1822)
T KOG4674|consen 813 ELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELE 878 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666544444433332 2222334 566677777777666777777777778788888877776
No 56
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.21 E-value=18 Score=41.04 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcc
Q 008742 456 IIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRT 515 (555)
Q Consensus 456 I~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALSTEKnSL 515 (555)
|..|-....|..-++..|+..+ .+..+++-|+|-| ||-.-|-||-+||+.=++|+-+
T Consensus 516 ~eel~~alektkQel~~tkarl--~stqqslaEke~H-L~nLr~errk~Lee~lemK~~a 572 (654)
T KOG4809|consen 516 IEELMNALEKTKQELDATKARL--ASTQQSLAEKEAH-LANLRIERRKQLEEILEMKKPA 572 (654)
T ss_pred HHHHHHHHHHHhhChhhhhhHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhh
Confidence 4444555556666666666555 5567788888877 8888999999999998898433
No 57
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.83 E-value=26 Score=41.67 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHH
Q 008742 372 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTF 451 (555)
Q Consensus 372 KLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~ 451 (555)
-.|.....|.+.++--.-...+=..+-++.++|+++.+-+.++...++.++. +.++++..+...+...+..
T Consensus 421 ~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~---------d~le~~~~~~~~~~~K~e~ 491 (980)
T KOG0980|consen 421 AAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLN---------DQLEELQRAAGRAETKTES 491 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhHH
Confidence 3445555566666555555555556666666666666666665544443321 3566666777777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008742 452 IADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPL 508 (555)
Q Consensus 452 l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEAL 508 (555)
..+.+.+|+.+...+..+++....++.|...++.. -+-+|-|.|=||=..+..+
T Consensus 492 ~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~---~~~~l~~~l~~KD~~~~~~ 545 (980)
T KOG0980|consen 492 QAKALESLRQELALLLIELEELQRTLSNLAQSHNN---QLAQLEDLLKQKDRLAAEL 545 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHhhHHHHHHH
Confidence 88888888888888888888888887666554433 2345555666665555443
No 58
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=92.76 E-value=29 Score=42.14 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 008742 282 EREERRKLKEKILAEKAAAKA 302 (555)
Q Consensus 282 ~re~rr~~re~~laE~~aAKa 302 (555)
-|++.|.+|=..|.+++++-+
T Consensus 735 aR~~~R~~ri~el~~~IaeL~ 755 (1353)
T TIGR02680 735 ARERARLRRIAELDARLAAVD 755 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555334555554443
No 59
>PRK11281 hypothetical protein; Provisional
Probab=92.46 E-value=25 Score=42.31 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 339 SELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAA 386 (555)
Q Consensus 339 ssLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAa 386 (555)
+.|...+.++.+.+...|..-..............|..+..++++.++
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~R 171 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQR 171 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 445555555555544444443333333444444444444444443333
No 60
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.41 E-value=3.7 Score=40.82 Aligned_cols=92 Identities=24% Similarity=0.285 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhH
Q 008742 362 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFE 441 (555)
Q Consensus 362 TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~E 441 (555)
-+.|.+.||-.++.+....-.+|..++. ++..|..+.+.++...+.|.++...+.+-..-|.. +......|
T Consensus 6 ~k~Ele~rL~q~eee~~~a~~~L~e~e~-------~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~--~~~~~~eE 76 (246)
T PF00769_consen 6 EKQELEERLRQMEEEMRRAQEALEESEE-------TAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEE--EAEMQEEE 76 (246)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3568888999998887766666555554 44444444444444444443333332221111110 11122345
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008742 442 REILEAEYTFIADKIIQLEDK 462 (555)
Q Consensus 442 rE~~reE~q~l~~kI~qLq~e 462 (555)
++.+.+++..+...|.+|..+
T Consensus 77 k~~Le~e~~e~~~~i~~l~ee 97 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEEE 97 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666655555
No 61
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=92.37 E-value=16 Score=38.19 Aligned_cols=129 Identities=11% Similarity=0.157 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccc
Q 008742 347 ETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG 426 (555)
Q Consensus 347 ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQka 426 (555)
|-.+.++.+=..|..+=-+.-+.+.+|= ...|+-..+-+...+.+.++.+++|+.+|+.++..+..|.+.+.++....
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms--~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~ 118 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMS--STQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITE 118 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 3344455555555555555555555543 45667777888888889999999999999999999999998888866543
Q ss_pred h--hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 427 I--YLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 427 s--~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
. ..+.+..+.++-..-..+..++...+.++.+.+.++..++.-+..+...+
T Consensus 119 ~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~ 171 (301)
T PF06120_consen 119 NGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQR 171 (301)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23444445555555555566677777777777777666555554443333
No 62
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.91 E-value=15 Score=36.80 Aligned_cols=18 Identities=28% Similarity=0.154 Sum_probs=6.6
Q ss_pred HHHHHHHHhHHHhHHHHh
Q 008742 399 AELRQQTELKEVAHEELS 416 (555)
Q Consensus 399 aELqQQVkl~e~~~EslK 416 (555)
..++.++..++..+..++
T Consensus 206 ~~~~~~l~~~~~~l~~~~ 223 (423)
T TIGR01843 206 AEAQGELGRLEAELEVLK 223 (423)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 333333333333333333
No 63
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.76 E-value=39 Score=41.39 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcc
Q 008742 463 AKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRT 515 (555)
Q Consensus 463 a~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALSTEKnSL 515 (555)
+.+++++.++.+++..-.....-+|+++..++-.-..-=|.|||....=|+++
T Consensus 723 ~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~ 775 (1317)
T KOG0612|consen 723 LLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSL 775 (1317)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44578888888888644444456677776666666666666666655555544
No 64
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.55 E-value=28 Score=39.23 Aligned_cols=39 Identities=21% Similarity=0.069 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCccchhHHHHH
Q 008742 485 IELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRML 523 (555)
Q Consensus 485 ~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~QLERLE 523 (555)
.|.-+.|..|--.|==-|.-=|-|+-||--|.--+.|||
T Consensus 413 sE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le 451 (546)
T PF07888_consen 413 SENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLE 451 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454444444443332233444667888888877788888
No 65
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.54 E-value=22 Score=44.87 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=98.7
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhh-h
Q 008742 352 FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL-K 430 (555)
Q Consensus 352 lerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l-~ 430 (555)
|.-|...|..+..++..=+..+-.......+-+-.||.+|+-+..+-+++.|.+--++.....++-++..++...-.. .
T Consensus 1009 l~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~ 1088 (1822)
T KOG4674|consen 1009 LQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHA 1088 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 778889999999999999999999999999999999999999999999999999999999999999998887653322 1
Q ss_pred hhh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 431 RLA-ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGN 469 (555)
Q Consensus 431 ql~-eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeE 469 (555)
.+. ....|..++++++.+...+..+|+.|..+-+-+...
T Consensus 1089 ~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~q 1128 (1822)
T KOG4674|consen 1089 LLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQ 1128 (1822)
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 345799999999999999999999988874443333
No 66
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.53 E-value=36 Score=41.13 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhc
Q 008742 365 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (555)
Q Consensus 365 EalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~k 423 (555)
.+-.-+..|++.......-+..+|..+.+++++..+.--++...-..++...++..+++
T Consensus 847 ~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~ 905 (1174)
T KOG0933|consen 847 SLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGE 905 (1174)
T ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhccc
Confidence 33344445555555555556666666666666666666666666666665555555543
No 67
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.14 E-value=10 Score=44.17 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=65.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchh----hhhh-h
Q 008742 359 HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY----LKRL-A 433 (555)
Q Consensus 359 h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~----l~ql-~ 433 (555)
|+..--+.-+|+-||+..+++++..|-+|-+++........-|--+|. + -+...++|..-..+.+-. +.++ .
T Consensus 154 aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvd--E-rlqlhlkermaAle~kn~L~~e~~s~kk 230 (916)
T KOG0249|consen 154 AEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVD--E-RLQLHLKERMAALEDKNRLEQELESVKK 230 (916)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444667899999999999999999999999888766555544444 1 111112222222222211 1222 1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008742 434 ASKGVEFEREILEAEYTFIADKIIQLED 461 (555)
Q Consensus 434 eL~~~r~ErE~~reE~q~l~~kI~qLq~ 461 (555)
.+..++|+++.++..+..|...+.||+.
T Consensus 231 ~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 231 QLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5677889999999999999999999984
No 68
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.76 E-value=45 Score=40.93 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=6.5
Q ss_pred CCCcchhhhc
Q 008742 168 GRSSSVELQN 177 (555)
Q Consensus 168 ~r~s~~e~~~ 177 (555)
||++.-++++
T Consensus 328 grngiedik~ 337 (1317)
T KOG0612|consen 328 GRNGIEDIKN 337 (1317)
T ss_pred ccccHHHHHh
Confidence 6666666665
No 69
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.54 E-value=17 Score=34.91 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 008742 485 IELKRRLGQLTDHLIQKQAQ 504 (555)
Q Consensus 485 ~ELE~RLhQLTD~LIQKQTq 504 (555)
.+++.+++++...|...+.+
T Consensus 129 ~~~~~~l~~l~~~l~~~r~~ 148 (302)
T PF10186_consen 129 EERKQRLSQLQSQLARRRRQ 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544
No 70
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=90.52 E-value=6.5 Score=38.22 Aligned_cols=120 Identities=23% Similarity=0.283 Sum_probs=85.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhccc--------------chhhhhhhhhhhhhhHHHHHHHHHHHH
Q 008742 387 AQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT--------------GIYLKRLAASKGVEFEREILEAEYTFI 452 (555)
Q Consensus 387 AQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQk--------------as~l~ql~eL~~~r~ErE~~reE~q~l 452 (555)
.+|-+.....++.+|+.++.-+...++.++.|..=+++. -+.+.++ +.....|.-.+++.++..
T Consensus 3 ~~rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpql--l~~h~eEvr~Lr~~LR~~ 80 (194)
T PF15619_consen 3 TQRVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQL--LQRHNEEVRVLRERLRKS 80 (194)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHHHHHHHH
Confidence 567777777788888888877777777777666554432 1122222 334555788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC-------chhHH-HHHHHHHHHHHHHHHHHhhhhccc
Q 008742 453 ADKIIQLEDKAKKLEGNIEMTRKEIED-------PTEVE-IELKRRLGQLTDHLIQKQAQVFPL 508 (555)
Q Consensus 453 ~~kI~qLq~ea~KLEeEI~~TKktl~~-------~TssE-~ELE~RLhQLTD~LIQKQTqLEAL 508 (555)
.+++..+.-+.++.+.+|+.++.++.+ +.--| -||..+|..++..|-.+--.+-.|
T Consensus 81 q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 81 QEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888889999988887533 22222 789999999999887776665554
No 71
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.86 E-value=36 Score=38.36 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=30.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHH
Q 008742 293 ILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQ 342 (555)
Q Consensus 293 ~laE~~aAKaaaaIkeRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ 342 (555)
.|+-|||- .-+| |--||+|.-.|+..+.....--+.+.+.+.
T Consensus 46 ~LNDRLA~-----YIek---VR~LEaqN~~L~~di~~lr~~~~~~ts~ik 87 (546)
T KOG0977|consen 46 ELNDRLAV-----YIEK---VRFLEAQNRKLEHDINLLRGVVGRETSGIK 87 (546)
T ss_pred HHHHHHHH-----HHHH---HHHHHHHHHHHHHHHHHHHhhccCCCcchh
Confidence 68888864 3333 677899999999999888776666644444
No 72
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.83 E-value=38 Score=38.92 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 318 GEKQSLEKILEERAKQQVKEASELQTSMMETMDA---FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEME 394 (555)
Q Consensus 318 ~EKesLeKiL~er~kQqaqEassLQ~~m~ET~Qa---lerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeE 394 (555)
.|.++=.+.|....++|.+++..|++.....-+. +..--+.-...|...+.|..+|=..-..----|..|||.+..|
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~E 640 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKE 640 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 5666667788888889999999998874433222 2221222223344444555544333333233477789998888
Q ss_pred HhHHHHHHHHHHhHHHhHHHHhhhhhh
Q 008742 395 TNQVAELRQQTELKEVAHEELSQRNSN 421 (555)
Q Consensus 395 k~rvaELqQQVkl~e~~~EslKQeL~d 421 (555)
..++.+ ++...+..++.+|.++..
T Consensus 641 L~~~~~---~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 641 LERMKD---QLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 766554 466667777777766654
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.78 E-value=11 Score=38.41 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhh--hhhhhhhhhHHHHHH
Q 008742 369 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKR--LAASKGVEFEREILE 446 (555)
Q Consensus 369 RLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~q--l~eL~~~r~ErE~~r 446 (555)
|..-++.=...|.+-++..+.-+..=......+...+..+..-...++.++..+++....+.. -++|..++.|-..+.
T Consensus 143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~ 222 (325)
T PF08317_consen 143 RMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQK 222 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHH
Confidence 555556666666666666665555544555555555556666666777788877776654433 236667766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008742 447 AEYTFIADKIIQLEDKAKKLEGNIEMTRKE 476 (555)
Q Consensus 447 eE~q~l~~kI~qLq~ea~KLEeEI~~TKkt 476 (555)
.++......+.+|+.+...++.+|+..+..
T Consensus 223 ~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 223 EEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666777666666666554443
No 74
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.70 E-value=48 Score=38.92 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=91.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 313 VARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDA-FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKL 391 (555)
Q Consensus 313 Va~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~Qa-lerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkl 391 (555)
|-.|+.|-+.|..+|++-+. ..-++--.+.-+++ +++-...|.+.|.-+ ..||..+..+-.++--|-.-+
T Consensus 497 i~~L~sE~~~lk~il~~Kee-----~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~----~~le~~~~a~qat~d~a~~Dl 567 (961)
T KOG4673|consen 497 ITKLQSEENKLKSILRDKEE-----TEKLLQETIEKHQAELTRQKDYYSNSRALA----AALEAQALAEQATNDEARSDL 567 (961)
T ss_pred HHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHhhhhhhhhH
Confidence 34566788888888776543 22222223333443 566666666644333 333333333333333333312
Q ss_pred HHH-HhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH--HHHH------
Q 008742 392 EME-TNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQ--LEDK------ 462 (555)
Q Consensus 392 eeE-k~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~q--Lq~e------ 462 (555)
.-+ ..+-++++++-.++=..+++|++.|+..+|-+..- .++.|.|+..|+-+++. ++.+
T Consensus 568 qk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarr------------Ed~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 568 QKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARR------------EDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 111 12244778887888888888888888777655221 24556666666666543 2222
Q ss_pred ---HHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 008742 463 ---AKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFP 507 (555)
Q Consensus 463 ---a~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEA 507 (555)
.+=|=..|+.+..++...|+..-=+| ++|.+.|=--||++-+
T Consensus 636 ~~TTrPLlRQIE~lQ~tl~~~~tawereE---~~l~~rL~dSQtllr~ 680 (961)
T KOG4673|consen 636 PETTRPLLRQIEALQETLSKAATAWEREE---RSLNERLSDSQTLLRI 680 (961)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHHHHH---HHHHHhhhhHHHHHHH
Confidence 11145567777777755555432223 4566667666776643
No 75
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=89.50 E-value=50 Score=40.03 Aligned_cols=182 Identities=16% Similarity=0.165 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---HHhHHHHHHHHHHhHH
Q 008742 340 ELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKK-------LEM---ETNQVAELRQQTELKE 409 (555)
Q Consensus 340 sLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRk-------lee---Ek~rvaELqQQVkl~e 409 (555)
+.--.|-++++.++.|-..-++-.+||+.=.+.+-+.+-+++...-.|+|- +.+ =++||.+|++--..+-
T Consensus 198 enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLl 277 (1195)
T KOG4643|consen 198 ENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLL 277 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHH
Confidence 555677888999999999999999999999999999999999888887752 222 3688999988877777
Q ss_pred HhHHHHhhhhhhhcccc---hhhhhhh----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hc
Q 008742 410 VAHEELSQRNSNTHQTG---IYLKRLA----ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK-----EI 477 (555)
Q Consensus 410 ~~~EslKQeL~d~kQka---s~l~ql~----eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKk-----tl 477 (555)
..-+=++..|+.|+... ++-.+++ .+..++.|+++.+--+..|.-.+.+|+.+.+.|-..++.-.. ++
T Consensus 278 eekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~ 357 (1195)
T KOG4643|consen 278 EEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEEL 357 (1195)
T ss_pred HHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhh
Confidence 77777888888888653 3323343 456788899998888888888888888887776555555444 34
Q ss_pred cCch------------hHHHHHHHHHHHHHHHHHHHhh-hhcc-------ccCCCCccchhHHHHH
Q 008742 478 EDPT------------EVEIELKRRLGQLTDHLIQKQA-QVFP-------LNFLPGRTTIPVMRML 523 (555)
Q Consensus 478 ~~~T------------ssE~ELE~RLhQLTD~LIQKQT-qLEA-------LSTEKnSLv~QLERLE 523 (555)
+|.+ -...+||+| .+|.+|=+-|+ -+|+ |.+|+--|-.-.+-||
T Consensus 358 en~Sl~~e~eqLts~ralkllLEnr--rlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Le 421 (1195)
T KOG4643|consen 358 ENESLQVENEQLTSDRALKLLLENR--RLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILE 421 (1195)
T ss_pred hhhhHHHHHHHhhhHHHHHHHHHhH--HHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHH
Confidence 4443 123455553 56666666554 2332 3445555555555554
No 76
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.47 E-value=22 Score=34.61 Aligned_cols=143 Identities=22% Similarity=0.332 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcc
Q 008742 345 MMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 345 m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQ 424 (555)
=++.|..++.|...-+......-...+.+..+|..|.+.|+.|+....+=..+.... ..-+..+..++.++..+.
T Consensus 25 NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y----~kdK~~L~~~k~rl~~~e- 99 (201)
T PF13851_consen 25 NLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY----EKDKQSLQNLKARLKELE- 99 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-
Confidence 345555566555555544444444566677777777777777766544333222222 111222222222222111
Q ss_pred cchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhH-HHHHHHHHHHHHHHHHHHhh
Q 008742 425 TGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEV-EIELKRRLGQLTDHLIQKQA 503 (555)
Q Consensus 425 kas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~Tss-E~ELE~RLhQLTD~LIQKQT 503 (555)
..+..++.|.+.+... +.+++.+...|..--..+=-+...+|.. -.=||++|..|++.|=+|++
T Consensus 100 --------k~l~~Lk~e~evL~qr-------~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 100 --------KELKDLKWEHEVLEQR-------FEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred --------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1344444444444443 3334444333333333333333333422 25589999999999999999
Q ss_pred hhcc
Q 008742 504 QVFP 507 (555)
Q Consensus 504 qLEA 507 (555)
||..
T Consensus 165 qL~e 168 (201)
T PF13851_consen 165 QLNE 168 (201)
T ss_pred HHHH
Confidence 8763
No 77
>PF13166 AAA_13: AAA domain
Probab=89.26 E-value=38 Score=37.14 Aligned_cols=12 Identities=17% Similarity=0.484 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhh
Q 008742 540 SIITLLLFMERM 551 (555)
Q Consensus 540 ~~~~~~~~~~~~ 551 (555)
.+|+|+.||..+
T Consensus 507 ~~iAf~yFla~l 518 (712)
T PF13166_consen 507 RAIAFAYFLAEL 518 (712)
T ss_pred HHHHHHHHHHHH
Confidence 389999998764
No 78
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.13 E-value=25 Score=35.08 Aligned_cols=122 Identities=24% Similarity=0.207 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhh-hhhhhhhhHHHH
Q 008742 366 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRL-AASKGVEFEREI 444 (555)
Q Consensus 366 alaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql-~eL~~~r~ErE~ 444 (555)
.|.-+.-|+.-|+.|+.=.+..++.++-=..--+.| ...+++|+..+...+|..-..+-+ ++++.++-..--
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L-------~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~ 78 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQL-------AEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKS 78 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444433332221122222 122334444444333222222333 367777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHH-HHHHHHHHHHH
Q 008742 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVE-IELKRRLGQLT 495 (555)
Q Consensus 445 ~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE-~ELE~RLhQLT 495 (555)
++++.+.|..+--++..+.+.|.++|+-.-..-. +-..| -.|.+|..+|.
T Consensus 79 lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~-kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 79 LEEENRSLLAQARQLEKEQQSLVAEIETLQEENG-KLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHhhhhHHHHHHHHH
Confidence 8888999999998899888888888887554421 11234 45667777764
No 79
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=88.71 E-value=41 Score=36.83 Aligned_cols=99 Identities=19% Similarity=0.122 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhh-hhhhhhhhhhHHHH
Q 008742 366 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLK-RLAASKGVEFEREI 444 (555)
Q Consensus 366 alaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~-ql~eL~~~r~ErE~ 444 (555)
.+.-.++||.+.+++---|+..+..+....-+|..|+.++..++...+..++++..-...+ +++ .+.+-+.+..|++.
T Consensus 284 ~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~-~la~~laeYe~L~le~ef 362 (434)
T PRK15178 284 IYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQ-GSSESLSLFEDLRLQSEI 362 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCC-chhHHHHHHHHHHHHHHH
Confidence 4566889999999999899999888888999999999999999999999999987432111 344 45577889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008742 445 LEAEYTFIADKIIQLEDKAKK 465 (555)
Q Consensus 445 ~reE~q~l~~kI~qLq~ea~K 465 (555)
..+-|......+++-+.+|.+
T Consensus 363 Ae~~y~sAlaaLE~AR~EA~R 383 (434)
T PRK15178 363 AKARWESALQTLQQGKLQALR 383 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999998888877776655543
No 80
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.59 E-value=66 Score=39.02 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=37.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCC
Q 008742 437 GVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPG 513 (555)
Q Consensus 437 ~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALSTEKn 513 (555)
..+.+.+.+..++-++..++.+|+.+...+..++......+ ..+++++.+|--.+=+.+-.+.+|.-=|.
T Consensus 398 e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~-------~~i~~~i~~l~k~i~~~~~~l~~lk~~k~ 467 (1074)
T KOG0250|consen 398 ERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK-------EHIEGEILQLRKKIENISEELKDLKKTKT 467 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444455555555555555555555444444333332222 23456677777777777777777765443
No 81
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.33 E-value=58 Score=38.07 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=35.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 008742 434 ASKGVEFEREILEAEYTFIADKIIQLEDKA----KKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLN 509 (555)
Q Consensus 434 eL~~~r~ErE~~reE~q~l~~kI~qLq~ea----~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALS 509 (555)
++..++...+....++..|.++|..|.+.. ..+.....+.+- ++.++.. +.=+-.|=+.|.-|.-..+.|-
T Consensus 379 Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~---~~d~~~~--~~~~~~lEea~~eker~~e~l~ 453 (775)
T PF10174_consen 379 EIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS---QADSSNE--DEALETLEEALREKERLQERLE 453 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccccch--HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555554443332 223333333332 2222211 1233566778888888888775
Q ss_pred C
Q 008742 510 F 510 (555)
Q Consensus 510 T 510 (555)
-
T Consensus 454 e 454 (775)
T PF10174_consen 454 E 454 (775)
T ss_pred H
Confidence 3
No 82
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=87.93 E-value=50 Score=36.84 Aligned_cols=152 Identities=24% Similarity=0.277 Sum_probs=84.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 313 VARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFE----LEKQRHNNTRMEALQLLAKLETANADLARALAAAQ 388 (555)
Q Consensus 313 Va~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~Qale----rEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQ 388 (555)
+.+|+.||--||..|+- |-.=+.+++|.-+..++ .+|-.-.|.|.|+.+-.++||.|..-|..+|=
T Consensus 138 l~qLr~ek~~lEq~leq-------eqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~Lw--- 207 (552)
T KOG2129|consen 138 LKQLRHEKLPLEQLLEQ-------EQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLW--- 207 (552)
T ss_pred HHHHHhhhccHHHHHHH-------HHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHH---
Confidence 34566666666665542 22234556665555433 44555677888999999999999888777763
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhh---hccc-chhhhhhh-------hhhhhhhHHHHHHHHHHHH----H
Q 008742 389 KKLEMETNQVAELRQQTELKEVAHEELSQRNSN---THQT-GIYLKRLA-------ASKGVEFEREILEAEYTFI----A 453 (555)
Q Consensus 389 RkleeEk~rvaELqQQVkl~e~~~EslKQeL~d---~kQk-as~l~ql~-------eL~~~r~ErE~~reE~q~l----~ 453 (555)
+|++.|.+.-..+-. .|-|...+ +... ..+...+| -..-++.|.+.+|--+..+ +
T Consensus 208 -------KrmdkLe~ekr~Lq~---KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ 277 (552)
T KOG2129|consen 208 -------KRMDKLEQEKRYLQK---KLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQ 277 (552)
T ss_pred -------HHHHHHHHHHHHHHH---HhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555443322211 11111111 0000 00111222 1234566777777544433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 008742 454 DKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRR 490 (555)
Q Consensus 454 ~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~R 490 (555)
.++.|+..+...++++.++..+-| ..|||+|
T Consensus 278 ek~~qy~~Ee~~~reen~rlQrkL------~~e~erR 308 (552)
T KOG2129|consen 278 EKLMQYRAEEVDHREENERLQRKL------INELERR 308 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHH
Confidence 456677777777888888877776 6788887
No 83
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.86 E-value=34 Score=33.81 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHH------------hHHHHHHHHHHhHHHhHHHHhhhhhhhcccc
Q 008742 377 NADLARALAAAQKKLEMET------------NQVAELRQQTELKEVAHEELSQRNSNTHQTG 426 (555)
Q Consensus 377 ~qeLAeSLAaAQRkleeEk------------~rvaELqQQVkl~e~~~EslKQeL~d~kQka 426 (555)
..+|+.+|.-+...|+... .++.++++++......+..++.++..++..-
T Consensus 164 ~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~ 225 (312)
T PF00038_consen 164 SSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQI 225 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhh
Confidence 4567777776665555433 4677788888777777778888777766543
No 84
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=86.77 E-value=27 Score=35.51 Aligned_cols=30 Identities=7% Similarity=-0.041 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhHHHhHHHHhhhhhhhccc
Q 008742 396 NQVAELRQQTELKEVAHEELSQRNSNTHQT 425 (555)
Q Consensus 396 ~rvaELqQQVkl~e~~~EslKQeL~d~kQk 425 (555)
...+-+++|+..++..++.+.++|.+|+.+
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666667777777777777777654
No 85
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.67 E-value=27 Score=32.43 Aligned_cols=14 Identities=7% Similarity=0.230 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q 008742 485 IELKRRLGQLTDHL 498 (555)
Q Consensus 485 ~ELE~RLhQLTD~L 498 (555)
..+|.||.+|+.-+
T Consensus 125 ~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 125 DQWEEKYEELEEKY 138 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777776544
No 86
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.35 E-value=89 Score=38.11 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH--HHHhhh-hccccCCCCcc
Q 008742 463 AKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHL--IQKQAQ-VFPLNFLPGRT 515 (555)
Q Consensus 463 a~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~L--IQKQTq-LEALSTEKnSL 515 (555)
...+.-++.....++.|-+.--.|||.|+.+|+..+ ++||-+ |.+..+++...
T Consensus 383 l~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~ 438 (1141)
T KOG0018|consen 383 LEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRS 438 (1141)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666788888888888877 344433 55555555443
No 87
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.95 E-value=91 Score=37.96 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=13.6
Q ss_pred HhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008742 317 EGEKQSLEKILEERAKQQVKEASELQTSMM 346 (555)
Q Consensus 317 E~EKesLeKiL~er~kQqaqEassLQ~~m~ 346 (555)
+.+..-||+...+|..-....+.+|..-.-
T Consensus 768 ~~~i~~lE~~~~d~~~~re~rlkdl~keik 797 (1174)
T KOG0933|consen 768 EDKISTLEKKMKDAKANRERRLKDLEKEIK 797 (1174)
T ss_pred HHHHHHHHHHHhHhhhhhHhHHHHHHHHHH
Confidence 333444444445544444444444444433
No 88
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.91 E-value=26 Score=32.47 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008742 380 LARALAAAQKKLEMETNQVAELRQQTE 406 (555)
Q Consensus 380 LAeSLAaAQRkleeEk~rvaELqQQVk 406 (555)
+-..++..++.+++...+..++...+.
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444443333333333333
No 89
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.86 E-value=7.7 Score=38.14 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 008742 364 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKE 409 (555)
Q Consensus 364 mEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e 409 (555)
..+..|+.+||.+.++|-.-|+.+.-... .+.+++++.++..+
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~ 131 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSD 131 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHH
Confidence 34556666777666666655555543332 44445555444433
No 90
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=85.51 E-value=45 Score=33.97 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhH
Q 008742 338 ASELQTSMMETMDAFELEKQRHNNTR-----MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 412 (555)
Q Consensus 338 assLQ~~m~ET~QalerEqe~h~~TQ-----mEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~ 412 (555)
+..++.++.++..++..=+..|.... .....-++.|+.+.+++-.-|+.+...+.+.--+|-.|+.++..++..+
T Consensus 179 l~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i 258 (362)
T TIGR01010 179 VKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQI 258 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHH
Confidence 33444444444444444344443221 1223345666666666666666665566666667777777777777776
Q ss_pred HHHhhhhhhhcccchhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 413 EELSQRNSNTHQTGIYLK-RLAASKGVEFEREILEAEYTFIADKIIQLEDKA 463 (555)
Q Consensus 413 EslKQeL~d~kQkas~l~-ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea 463 (555)
....+++..... ..++ ...++..++.|.+..+.-|..+..+..+.+.++
T Consensus 259 ~~e~~~i~~~~~--~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~ 308 (362)
T TIGR01010 259 DEQRNQLSGGLG--DSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEA 308 (362)
T ss_pred HHHHHHhhcCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666654321 1222 234778888899999999988888877766543
No 91
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=85.48 E-value=3 Score=33.75 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 344 SMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQ 388 (555)
Q Consensus 344 ~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQ 388 (555)
.+-+....++-|++.++..+.++-.|+++|+.+|..|-.-|...|
T Consensus 5 Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 5 RLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667779999999999999999999999999999988877665
No 92
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.34 E-value=15 Score=35.15 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 369 LLAKLETANADLARALAAAQKKLEM 393 (555)
Q Consensus 369 RLaKLE~e~qeLAeSLAaAQRklee 393 (555)
|+..+..+.+.+-......+.++++
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 93
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=85.16 E-value=50 Score=34.11 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=28.5
Q ss_pred HHHHHHH----hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008742 311 NMVARLE----GEKQSLEKILEERAKQQVKEASELQTSMMETM 349 (555)
Q Consensus 311 nmVa~LE----~EKesLeKiL~er~kQqaqEassLQ~~m~ET~ 349 (555)
++++.|+ ...+.+...|.+|++.-....+.||.++.+.-
T Consensus 52 ~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~ 94 (258)
T PF15397_consen 52 TAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLD 94 (258)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445555 55777788888899988888888888776543
No 94
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=84.78 E-value=0.29 Score=54.35 Aligned_cols=27 Identities=26% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHhhhhccccCCCCccchhHHHHH
Q 008742 497 HLIQKQAQVFPLNFLPGRTTIPVMRML 523 (555)
Q Consensus 497 ~LIQKQTqLEALSTEKnSLv~QLERLE 523 (555)
+|=+-+.=+|-|=-||-+|.-.|+|||
T Consensus 275 ~Lr~~~~n~elLeEe~~sLq~kl~~~E 301 (722)
T PF05557_consen 275 HLRQSQENVELLEEEKRSLQRKLERLE 301 (722)
T ss_dssp ---------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555554
No 95
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=84.30 E-value=81 Score=35.89 Aligned_cols=109 Identities=21% Similarity=0.235 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccch-hhhhhh----hhhhhhhHHH
Q 008742 369 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGI-YLKRLA----ASKGVEFERE 443 (555)
Q Consensus 369 RLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas-~l~ql~----eL~~~r~ErE 443 (555)
+..+|-.++.+|..+|-+.|....+=..+..+|+.++...+..++.-.++++.+.+--. .+..+. +..-+-.|++
T Consensus 175 ~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e 254 (617)
T PF15070_consen 175 AFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKE 254 (617)
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777666666666666766666666666655555555543211 111221 2223334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 444 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 444 ~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
.+--.+-+-+.-+.+|+-+..+....+++..+.+
T Consensus 255 ~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~EL 288 (617)
T PF15070_consen 255 ELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQEL 288 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4444433322223444444444444444444443
No 96
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.22 E-value=36 Score=39.43 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=33.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008742 435 SKGVEFEREILEAEYTFIADKIIQ----LEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPL 508 (555)
Q Consensus 435 L~~~r~ErE~~reE~q~l~~kI~q----Lq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEAL 508 (555)
...|+.|...++.+|..+..+..+ ++++.+.|...+..+.+.....-..=.+||+.|+.++..--..|+.|=+.
T Consensus 368 v~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsA 445 (717)
T PF09730_consen 368 VIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSA 445 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344445555555554444443322 23333444444444333321111112566666666666666666555443
No 97
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=84.18 E-value=47 Score=36.89 Aligned_cols=83 Identities=28% Similarity=0.420 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhhh--HHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----H
Q 008742 287 RKLKEKILAEKAAAKAG--DAIK--ERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQ----R 358 (555)
Q Consensus 287 r~~re~~laE~~aAKaa--aaIk--eRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe----~ 358 (555)
|.++++.|||--||-+. .|.| .|+.|--+|+.-. ++ .+-...|+-+-++-+|+|.+|.+ -
T Consensus 369 reEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsq-Sv-----------nsdveaLRrQyleelqsvqRELeVLSEQ 436 (593)
T KOG4807|consen 369 REEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQ-SV-----------NSDVEALRRQYLEELQSVQRELEVLSEQ 436 (593)
T ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh-cc-----------ccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445578887666554 3333 4555544443110 11 12245567777777777766654 3
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHH
Q 008742 359 HNNTRMEALQLLAKLETANADLA 381 (555)
Q Consensus 359 h~~TQmEalaRLaKLE~e~qeLA 381 (555)
|.+-=-|...--..||++++.|-
T Consensus 437 YSQKCLEnahLaqalEaerqaLR 459 (593)
T KOG4807|consen 437 YSQKCLENAHLAQALEAERQALR 459 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445566665443
No 98
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=84.08 E-value=92 Score=36.30 Aligned_cols=139 Identities=16% Similarity=0.144 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHH----------HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------H
Q 008742 337 EASELQTSMMETMDA----------FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQV-------A 399 (555)
Q Consensus 337 EassLQ~~m~ET~Qa----------lerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rv-------a 399 (555)
+-..+|++....++. +=.|+.+-|++....+.=..+|+...+.|.-+....+-....=-.+. .
T Consensus 462 A~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~ 541 (698)
T KOG0978|consen 462 AFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNES 541 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 344566666655554 45577777777778888888888888888877766654332222222 2
Q ss_pred HHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 400 ELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 400 ELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
-+-.+.......++.++...+++++....+.. .+....-..+.+...++.+...|.-+..+++++|+|+.+.++.+
T Consensus 542 ~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~--~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 542 KLIKELTTLTQSLEMLKKKAQEAKQSLEDLQI--ELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKL 617 (698)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344444444555555444443322111 22222233444556666666666667777888888888887774
No 99
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=83.79 E-value=76 Score=35.12 Aligned_cols=108 Identities=21% Similarity=0.197 Sum_probs=60.5
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 008742 301 KAGDAIKERENMVARLEGEKQSLEKILEER---AKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETAN 377 (555)
Q Consensus 301 KaaaaIkeRenmVa~LE~EKesLeKiL~er---~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~ 377 (555)
||..+|..=+.+++.++.+..++..-|++- +..+..+...|....-+.-..+---.-.|-.+--..=.+|..+|..-
T Consensus 98 ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F 177 (560)
T PF06160_consen 98 KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEF 177 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHH
Confidence 444777788888888888888877665544 33555556555554444433444444444455555555666666655
Q ss_pred HHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHhH
Q 008742 378 ADLARALA-----AAQKKLEMETNQVAELRQQTELK 408 (555)
Q Consensus 378 qeLAeSLA-----aAQRkleeEk~rvaELqQQVkl~ 408 (555)
....+... .|...+..=+..+..|++.++..
T Consensus 178 ~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~I 213 (560)
T PF06160_consen 178 SEFEELTENGDYLEAREILEKLKEETDELEEIMEDI 213 (560)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55444332 24444444444445554444433
No 100
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=83.58 E-value=1.2e+02 Score=37.08 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhhhccccCCCCccchhHHHHH
Q 008742 491 LGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRML 523 (555)
Q Consensus 491 LhQLTD~LIQKQTqLEALSTEKnSLv~QLERLE 523 (555)
=++|++.|++=-..+..|+.+.-...-++.++.
T Consensus 267 N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~ 299 (1109)
T PRK10929 267 NRELSQALNQQAQRMDLIASQQRQAASQTLQVR 299 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666555555666555555555555554
No 101
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.32 E-value=21 Score=35.20 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=31.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 314 ARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEM 393 (555)
Q Consensus 314 a~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRklee 393 (555)
.+|+.|.+.|..-|++-..+-.+..++|+++.-+.-+. .++|+.+|+.|.+.|+.++.+++.
T Consensus 96 p~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~------------------~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSV------------------INGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544433334444444433321111 334888888887666665544443
No 102
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.56 E-value=22 Score=34.39 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008742 372 KLETANADLARALAAAQKKLEMETNQVAELRQQT 405 (555)
Q Consensus 372 KLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQV 405 (555)
-...+.+..|--|...|.|+..=+.+.++|.+++
T Consensus 6 a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 6 AYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777778888888888888888888887
No 103
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.14 E-value=42 Score=31.04 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhH
Q 008742 336 KEASELQTSMMETMDA---FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 412 (555)
Q Consensus 336 qEassLQ~~m~ET~Qa---lerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~ 412 (555)
++.+.+++...+.... ++........-...+-+|+..++....++.+-+...+..+.+...++.++++++.......
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENL 174 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333 2333333333445555566666666666666666666555555566666655555554444
Q ss_pred HHHhhhhh
Q 008742 413 EELSQRNS 420 (555)
Q Consensus 413 EslKQeL~ 420 (555)
..+.+.++
T Consensus 175 ~~l~~~~~ 182 (191)
T PF04156_consen 175 QQLEEKIQ 182 (191)
T ss_pred HHHHHHHH
Confidence 44444333
No 104
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=82.06 E-value=68 Score=34.03 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhHHHHHHHH
Q 008742 346 METMDAFELEKQRHNNTRMEALQLLAKLETANADLA---------------------RALAAAQKKLEMETNQVAELRQQ 404 (555)
Q Consensus 346 ~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLA---------------------eSLAaAQRkleeEk~rvaELqQQ 404 (555)
...++....|++.|+.|=.-+..|-..|.....++- .-|.-+.-.---=...+.+|+|.
T Consensus 15 ~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqk 94 (319)
T PF09789_consen 15 SQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQK 94 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777777774444446555555544443 33322222222222334445555
Q ss_pred HHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 405 TELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKK 465 (555)
Q Consensus 405 Vkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~K 465 (555)
+.-++--+--|+..+.+++...-+ ++.-... ||++.+=..+-.+.-++.+|+-..+-
T Consensus 95 l~E~qGD~KlLR~~la~~r~~~~~---~~~~~~~-~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 95 LNEAQGDIKLLREKLARQRVGDEG---IGARHFP-HEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred HHHHhchHHHHHHHHHhhhhhhcc---ccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444444555555554433211 1111111 66666666666666666666665433
No 105
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.99 E-value=1.1e+02 Score=35.48 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008742 449 YTFIADKIIQLEDKAKKLEGNIE 471 (555)
Q Consensus 449 ~q~l~~kI~qLq~ea~KLEeEI~ 471 (555)
..-|+.-+..||+|...||..+-
T Consensus 589 ~e~L~~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQHLENSLS 611 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444455555555554443
No 106
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=81.79 E-value=74 Score=39.33 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcc
Q 008742 367 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 367 laRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQ 424 (555)
+.=+..+--+.-.+-..+...|++++--+.+|.++..+|.-.+.-++...-.+.++.+
T Consensus 208 l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k 265 (1294)
T KOG0962|consen 208 LEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEK 265 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333344444445556678889999999999999988888777777766666655544
No 107
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=81.50 E-value=40 Score=33.98 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=23.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhc
Q 008742 387 AQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (555)
Q Consensus 387 AQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~k 423 (555)
+++.+..+....+.++.++..++..++..+..+.+|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~ 141 (346)
T PRK10476 105 TQRSVDAERSNAASANEQVERARANAKLATRTLERLE 141 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555666677777777777777777765
No 108
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.08 E-value=19 Score=37.09 Aligned_cols=37 Identities=30% Similarity=0.284 Sum_probs=16.6
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcc
Q 008742 388 QKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 388 QRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQ 424 (555)
+..+..=.....+|.++++.++...+.+.+++..++.
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444445555555555555444433
No 109
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.91 E-value=1.4e+02 Score=36.28 Aligned_cols=170 Identities=19% Similarity=0.240 Sum_probs=98.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHhHHH
Q 008742 333 QQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALA--AAQKKLEMETNQVAELRQQTELKEV 410 (555)
Q Consensus 333 QqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLA--aAQRkleeEk~rvaELqQQVkl~e~ 410 (555)
-|--.+-+.+++||+..-.|.+|..+-+.---|+.+=-.+.-.+-+++|.++- +..+-..+| |++-||+.|+.++-
T Consensus 262 iqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEE--RaesLQ~eve~lkE 339 (1243)
T KOG0971|consen 262 IQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEE--RAESLQQEVEALKE 339 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHH
Confidence 34444566778888887788888888888888888888888888888888864 444544444 55556666555544
Q ss_pred -------hHHHHhhhhhhhcccch-----hhhhhh--------hhhh--------------hhhHHHHHHHHHHHHHHHH
Q 008742 411 -------AHEELSQRNSNTHQTGI-----YLKRLA--------ASKG--------------VEFEREILEAEYTFIADKI 456 (555)
Q Consensus 411 -------~~EslKQeL~d~kQkas-----~l~ql~--------eL~~--------------~r~ErE~~reE~q~l~~kI 456 (555)
.+|=||-|+.+-.-.++ .+.+++ +|.. +..|-|+.+.|+..+.-.-
T Consensus 340 r~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~k 419 (1243)
T KOG0971|consen 340 RVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQK 419 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44445555554332221 133432 1111 2224555555554444333
Q ss_pred HHHHHH-------HHHHHHHHHHHhhh---ccCchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008742 457 IQLEDK-------AKKLEGNIEMTRKE---IEDPTEVEIELKRRLGQLTDHLIQKQAQVFPL 508 (555)
Q Consensus 457 ~qLq~e-------a~KLEeEI~~TKkt---l~~~TssE~ELE~RLhQLTD~LIQKQTqLEAL 508 (555)
+.|..+ ..-+.+.++++=-. .+.-|+.-.|||-|..+|-|+.= .+|||
T Consensus 420 E~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~----dlEal 477 (1243)
T KOG0971|consen 420 ERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVG----DLEAL 477 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHH----HHHHH
Confidence 333333 33344444443222 24455666899999999999874 46665
No 110
>PF14992 TMCO5: TMCO5 family
Probab=79.19 E-value=67 Score=33.65 Aligned_cols=73 Identities=27% Similarity=0.464 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 008742 304 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARA 383 (555)
Q Consensus 304 aaIkeRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeS 383 (555)
.-|.+++..+..|+.|......+++++.+.+.-. ..-++. ++.++.| -++||-++.-++.+
T Consensus 25 ~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~-~~~e~~----l~~le~e--------------~~~LE~~ne~l~~~ 85 (280)
T PF14992_consen 25 QKIQEKEGAIQSLEREITKMDHIADRSEEEDIIS-EERETD----LQELELE--------------TAKLEKENEHLSKS 85 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCchhHHhhhh-hchHHH----HHHHHhh--------------hHHHhhhhHhhhhh
Confidence 4566778888888877777766666665543332 222222 1222222 26888899999999
Q ss_pred HHHHHHHHHHHH
Q 008742 384 LAAAQKKLEMET 395 (555)
Q Consensus 384 LAaAQRkleeEk 395 (555)
+..-|++.++.-
T Consensus 86 ~~elq~k~~e~~ 97 (280)
T PF14992_consen 86 VQELQRKQDEQE 97 (280)
T ss_pred hhhhhhhhcccc
Confidence 999999877554
No 111
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=78.99 E-value=0.63 Score=51.76 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccc
Q 008742 370 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG 426 (555)
Q Consensus 370 LaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQka 426 (555)
+.+|..++.+|.. .|..=+.|.+|.+-+.+--.++.-++..++.||++|.++..-.
T Consensus 276 i~~L~q~~~eL~~-~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk 331 (713)
T PF05622_consen 276 IDELRQENEELQA-EAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLK 331 (713)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666542 2333334444433333333467778999999999998866443
No 112
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.63 E-value=51 Score=29.85 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008742 347 ETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAEL 401 (555)
Q Consensus 347 ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaEL 401 (555)
-+|-.+-.-.++....+-.+...+.+++.++..|-..+.+.+.+++.-...++.+
T Consensus 38 n~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~ 92 (151)
T PF11559_consen 38 NCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASA 92 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666667777777776666666666554444444444333
No 113
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=78.23 E-value=1.5e+02 Score=34.90 Aligned_cols=153 Identities=19% Similarity=0.158 Sum_probs=85.4
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHH---hhhhhhhcccchhhh---
Q 008742 357 QRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL---SQRNSNTHQTGIYLK--- 430 (555)
Q Consensus 357 e~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~Esl---KQeL~d~kQkas~l~--- 430 (555)
....+.=.+.-.+|..||..+...+.-|++||+.. +.|++|+......++.. -..|-.|=.--.|.+
T Consensus 165 ~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~-------d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~ 237 (739)
T PF07111_consen 165 ASLTSKAEELEKSLESLETRRAGEAKELAEAQREA-------DLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHS 237 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCccccc
Confidence 33333334445577899999999999999999876 55666666655555532 233333321111100
Q ss_pred --------h-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHhhh---
Q 008742 431 --------R-LAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIE----------------------MTRKE--- 476 (555)
Q Consensus 431 --------q-l~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~----------------------~TKkt--- 476 (555)
. ++.+..++.||+-+-.-...|+-++.+|.+=..=-|+++- +-|.-
T Consensus 238 ~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFa 317 (739)
T PF07111_consen 238 QAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFA 317 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 0 1233444455555555555555555553322111222222 11111
Q ss_pred -ccCchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccc
Q 008742 477 -IEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTT 516 (555)
Q Consensus 477 -l~~~TssE~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv 516 (555)
|..--..|.|++.=..||-...-.=|-+|.+-++|++-|.
T Consensus 318 LmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq 358 (739)
T PF07111_consen 318 LMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQ 358 (739)
T ss_pred HHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222355788888888888888778888888888887663
No 114
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.77 E-value=81 Score=32.89 Aligned_cols=109 Identities=16% Similarity=0.129 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhh--hhhhhhhhHHHHHH
Q 008742 369 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRL--AASKGVEFEREILE 446 (555)
Q Consensus 369 RLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql--~eL~~~r~ErE~~r 446 (555)
|..-++.=...|.+-+...+.-...=.++...+..=+-....-...|+.++..+++....++.. .++..++.+-..+.
T Consensus 138 R~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~ 217 (312)
T smart00787 138 RMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLL 217 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5555665555565555555544333333333333334444555567777777777777666543 35666766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 447 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 447 eE~q~l~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
.++.....++.+++.+.+.+...|+..+...
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k 248 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTNKK 248 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777655543
No 115
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.66 E-value=1.4e+02 Score=34.51 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhh---------hh---hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 396 NQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLK---------RL---AASKGVEFEREILEAEYTFIADKIIQLEDKA 463 (555)
Q Consensus 396 ~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~---------ql---~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea 463 (555)
.++.+|+-.++-++..+..-+.+.-.+.+..+.+. .+ +++++.+|=...+=.+|..|...=..||-.+
T Consensus 107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqV 186 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQV 186 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 34555555555555555544444444444333211 11 2555666544444455665555444454443
No 116
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.61 E-value=21 Score=40.90 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHH
Q 008742 462 KAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLT 495 (555)
Q Consensus 462 ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLT 495 (555)
+.+.++.+|+..++.|.++...=-+|+++|.+|-
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667777777776665554467777777653
No 117
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=77.54 E-value=0.73 Score=52.81 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccchhHHHHH
Q 008742 466 LEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRML 523 (555)
Q Consensus 466 LEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~QLERLE 523 (555)
++..++-++..+..-|..-.-|...|++|..-+-+=.-++|--...|+.|.-||.++.
T Consensus 241 L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~ 298 (859)
T PF01576_consen 241 LESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLN 298 (859)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 3444444444443333333344444444444443444444444444444444444433
No 118
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=77.09 E-value=1.3e+02 Score=33.48 Aligned_cols=178 Identities=20% Similarity=0.233 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHhHHHhH
Q 008742 339 SELQTSMMETMDAFELEKQRHNNTR---MEALQLLAKLETANADLARALAAAQKKLE---METNQVAELRQQTELKEVAH 412 (555)
Q Consensus 339 ssLQ~~m~ET~QalerEqe~h~~TQ---mEalaRLaKLE~e~qeLAeSLAaAQRkle---eEk~rvaELqQQVkl~e~~~ 412 (555)
..++....+.-+.++.|-.+++... ......+..+...+..|..-+.+.+-.|. .+...+..+..|++......
T Consensus 281 ~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~ 360 (560)
T PF06160_consen 281 EEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRY 360 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445788877777654 45667788888888899988888888874 57788899999999999999
Q ss_pred HHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhccC------
Q 008742 413 EELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDK-------AKKLEGNIEMTRKEIED------ 479 (555)
Q Consensus 413 EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~e-------a~KLEeEI~~TKktl~~------ 479 (555)
+.+.+.+.+-+..-|.+. +.++.+....+.+.+++..+...+..|+.. +.+++..|+.+|+.+..
T Consensus 361 ~~~~~~i~~~~~~yS~i~--~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGl 438 (560)
T PF06160_consen 361 EDLEERIEEQQVPYSEIQ--EELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGL 438 (560)
T ss_pred HHHHHHHHcCCcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999888887665544322 123333344444455555555555554444 55677788888777321
Q ss_pred c-------hhHH---HHHHHHH-------HHHHHHHHHHhhhhccccCCCCccchh
Q 008742 480 P-------TEVE---IELKRRL-------GQLTDHLIQKQAQVFPLNFLPGRTTIP 518 (555)
Q Consensus 480 ~-------TssE---~ELE~RL-------hQLTD~LIQKQTqLEALSTEKnSLv~Q 518 (555)
| ..+. ..|...| ..++..|+.=++.|+.|..+=+.++-+
T Consensus 439 p~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~ 494 (560)
T PF06160_consen 439 PEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDN 494 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1222 2333333 367788888888888887665555444
No 119
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=77.00 E-value=76 Score=30.96 Aligned_cols=124 Identities=16% Similarity=0.151 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhHhh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHH
Q 008742 346 METMDAFELEKQRHNNT------------RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE 413 (555)
Q Consensus 346 ~ET~QalerEqe~h~~T------------QmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~E 413 (555)
-..+.++..+...++.. -.+.-.|+.......+++-..|..++..+..--.+...+++++......+.
T Consensus 51 P~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ 130 (240)
T PF12795_consen 51 PKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQ 130 (240)
T ss_pred HHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 34555566666666443 334445566666666666666666666666555566666665555555555
Q ss_pred HHhhhhhhhcccc-hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhc
Q 008742 414 ELSQRNSNTHQTG-IYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKK--LEGNIEMTRKEI 477 (555)
Q Consensus 414 slKQeL~d~kQka-s~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~K--LEeEI~~TKktl 477 (555)
.+...|......+ +++... . +-.+..|+..+..++.-|+.+..- ..-+++.++.++
T Consensus 131 ei~~~L~~~~~~~~~~l~~a---~-----~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl 189 (240)
T PF12795_consen 131 EIRNQLQNLPPNGESPLSEA---Q-----RWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDL 189 (240)
T ss_pred HHHHHHhccCCCCcchhhHH---H-----HHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHH
Confidence 5555555543333 222221 1 223344444444444444444221 344455555554
No 120
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=76.82 E-value=1.3e+02 Score=34.16 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHH
Q 008742 368 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEA 447 (555)
Q Consensus 368 aRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~re 447 (555)
.+.+.|+....+|..-++.....+.+.--.|..|+.|...++...+.+++++..+ ...-.++..++.+.++.++
T Consensus 311 ~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~------p~~e~~~~~L~R~~~~~~~ 384 (726)
T PRK09841 311 EQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAM------PSTQQEVLRLSRDVEAGRA 384 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHH
Confidence 3344455555554444444445566666666666666554444444444433322 1222377788889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 008742 448 EYTFIADKIIQLEDK 462 (555)
Q Consensus 448 E~q~l~~kI~qLq~e 462 (555)
-|..+..+.++++..
T Consensus 385 lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 385 VYLQLLNRQQELSIS 399 (726)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887666
No 121
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.59 E-value=6.4 Score=40.48 Aligned_cols=119 Identities=19% Similarity=0.146 Sum_probs=50.1
Q ss_pred HHHHHHHhHHHhHHHHhhhhhhhcccch---hhhhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008742 400 ELRQQTELKEVAHEELSQRNSNTHQTGI---YLKRL-AASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 475 (555)
Q Consensus 400 ELqQQVkl~e~~~EslKQeL~d~kQkas---~l~ql-~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKk 475 (555)
.|+.++...+..++.|.+=|..+..... ....+ .++..++.|.+.+.+++..+...-..+..+...++.+......
T Consensus 13 ~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 13 QLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp -----------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445544444444442111 12222 2555666666666666666666666666666555555554432
Q ss_pred hccCchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccchhHHHHHHH
Q 008742 476 EIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRMLSL 525 (555)
Q Consensus 476 tl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~QLERLE~~ 525 (555)
.|.++=+.++.+.-.|++.+-...+|..-...+.-||+||...
T Consensus 93 -------eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 93 -------EEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2344555555555555555555555555555555667777744
No 122
>PRK11637 AmiB activator; Provisional
Probab=76.46 E-value=1.1e+02 Score=32.36 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHH
Q 008742 377 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEE 414 (555)
Q Consensus 377 ~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~Es 414 (555)
...+-..+..+...+...+..+..-...++.....++.
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~ 205 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQA 205 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554444443333333333333
No 123
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=75.57 E-value=1.6e+02 Score=34.03 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchh
Q 008742 436 KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTE 482 (555)
Q Consensus 436 ~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~Ts 482 (555)
.++++.+.-+.+++...+.+|.+|..+......+|+-+++.+...+.
T Consensus 299 ~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sD 345 (629)
T KOG0963|consen 299 NDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSD 345 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 46677777777788888888888888877777777777776655543
No 124
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=75.56 E-value=1.7e+02 Score=34.25 Aligned_cols=45 Identities=27% Similarity=0.398 Sum_probs=33.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHhhhc
Q 008742 433 AASKGVEFEREILEAEYTFIADKIIQ---LEDKAKK-LEGNIEMTRKEI 477 (555)
Q Consensus 433 ~eL~~~r~ErE~~reE~q~l~~kI~q---Lq~ea~K-LEeEI~~TKktl 477 (555)
++.++++||-..+.+|+..+..|++- |++=+.+ |++=++..+...
T Consensus 121 vefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ER 169 (717)
T PF09730_consen 121 VEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSER 169 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999854 4444333 666666555443
No 125
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=75.55 E-value=35 Score=32.42 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhh
Q 008742 347 ETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 419 (555)
Q Consensus 347 ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL 419 (555)
+.+-.+..|...-+..+.+...|+..+..+.+.+=. .+.....++++|+..+..++..+..+..++
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~-------~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l 139 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEK-------ELSEKERRLAELEAELAQLEEKIKDLEEEL 139 (194)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446666666666777777787777666555533 444444445555555544444444444433
No 126
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=75.43 E-value=57 Score=32.85 Aligned_cols=57 Identities=21% Similarity=0.196 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhh
Q 008742 364 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 420 (555)
Q Consensus 364 mEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~ 420 (555)
.+|+....-++.....+..+|+..++....+..+...++.+....+-......+.+.
T Consensus 179 ~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le 235 (297)
T PF02841_consen 179 QEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLE 235 (297)
T ss_dssp HHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666566666677777788888888888888877777777666655554444433
No 127
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=75.40 E-value=2.1e+02 Score=35.18 Aligned_cols=85 Identities=21% Similarity=0.162 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccch-hhhhhh----------hhhhhhhHHHHHHHHHHHHHH
Q 008742 386 AAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGI-YLKRLA----------ASKGVEFEREILEAEYTFIAD 454 (555)
Q Consensus 386 aAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas-~l~ql~----------eL~~~r~ErE~~reE~q~l~~ 454 (555)
+-+-....++.+.....-|.++...-|+.|.+.+..|+..-. -++++- .|+.--.+.|.+-.+++++.+
T Consensus 506 rl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~id 585 (1195)
T KOG4643|consen 506 RLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYID 585 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333445555566666666666666666666666666553211 112211 222222245556666777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 008742 455 KIIQLEDKAKKLEGNI 470 (555)
Q Consensus 455 kI~qLq~ea~KLEeEI 470 (555)
.+..|+....+||.+|
T Consensus 586 aL~alrrhke~LE~e~ 601 (1195)
T KOG4643|consen 586 ALNALRRHKEKLEEEI 601 (1195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777766666665
No 128
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=75.40 E-value=1.2e+02 Score=32.26 Aligned_cols=40 Identities=33% Similarity=0.572 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-----ccCchhHHHHHHHHHHHHHHHHHH
Q 008742 454 DKIIQLEDKAKKLEGNIEMTRKE-----IEDPTEVEIELKRRLGQLTDHLIQ 500 (555)
Q Consensus 454 ~kI~qLq~ea~KLEeEI~~TKkt-----l~~~TssE~ELE~RLhQLTD~LIQ 500 (555)
..++.|+++|+-|+.|+.--.+. ...|++++.| -||+-.|
T Consensus 164 esvqRLkdEardlrqelavr~kq~E~pR~~~Pss~~~e-------r~dtavq 208 (333)
T KOG1853|consen 164 ESVQRLKDEARDLRQELAVRTKQTERPRIVEPSSVEAE-------RTDTAVQ 208 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcCCccchhhh-------hcchhhc
Confidence 33455666777777666542222 5668887665 3666655
No 129
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=75.15 E-value=1.4e+02 Score=32.90 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008742 364 MEALQLLAKLETANADLARALAA 386 (555)
Q Consensus 364 mEalaRLaKLE~e~qeLAeSLAa 386 (555)
.++.+++..+..+..+++..|..
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~ 291 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQN 291 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 130
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=74.75 E-value=1.5e+02 Score=33.15 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 396 NQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRL-AASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNI 470 (555)
Q Consensus 396 ~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql-~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI 470 (555)
.++..+..+++..+..++.+.++|...-... -+..+ ..+..++.+...+++++..+..+|..++.+..+++.++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e-~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEE-QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554432111 01111 12333344444444444444444444444444444443
No 131
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=74.62 E-value=1.2e+02 Score=32.08 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008742 449 YTFIADKIIQLEDKAKKLEGN 469 (555)
Q Consensus 449 ~q~l~~kI~qLq~ea~KLEeE 469 (555)
+..+..++..|+.+...++.+
T Consensus 326 ~~~l~~~~~~l~~~~~~~~~~ 346 (498)
T TIGR03007 326 IASLEARVAELTARIERLESL 346 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 132
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=74.35 E-value=54 Score=32.75 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=66.2
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhh
Q 008742 352 FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKR 431 (555)
Q Consensus 352 lerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~q 431 (555)
..-|.-.++..+. ..||+..|.++..|.-=-+.++|-+.+...|+..|+..+.....-.. +...+.+- .
T Consensus 84 ~~AE~~Y~~F~~Q--t~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~----~va~~Q~q-----~ 152 (192)
T PF11180_consen 84 ARAEAIYRDFAQQ--TARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQ----QVAARQQQ-----A 152 (192)
T ss_pred hhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-----H
Confidence 4455555555554 36888888888888877888888888888888888887776654322 11111100 0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 432 LAASKGVEFEREILEAEYTFIADKIIQLEDKA 463 (555)
Q Consensus 432 l~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea 463 (555)
-.+...++-|+.-.++.++.|..+|++|+.+.
T Consensus 153 r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 153 RQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12555666777777777777777777777653
No 133
>PRK11281 hypothetical protein; Provisional
Probab=73.64 E-value=2.2e+02 Score=34.75 Aligned_cols=54 Identities=28% Similarity=0.225 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcc
Q 008742 371 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 371 aKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQ 424 (555)
..||..-.++...|..+|..+.+...+...++.+-+-+.....+.+++++...+
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~ 177 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN 177 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 457777777778888889999999999999999888888888888888888774
No 134
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.36 E-value=53 Score=32.88 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008742 437 GVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 476 (555)
Q Consensus 437 ~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt 476 (555)
++..+...+.++...-.....+|+.++...+++...++..
T Consensus 86 e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 86 EAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555554555555555555555554444443
No 135
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.83 E-value=2.3e+02 Score=34.60 Aligned_cols=17 Identities=41% Similarity=0.440 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008742 371 AKLETANADLARALAAA 387 (555)
Q Consensus 371 aKLE~e~qeLAeSLAaA 387 (555)
-.||.-|+-|-++|.+.
T Consensus 371 kqlEqqN~rLKdalVrL 387 (1243)
T KOG0971|consen 371 KQLEQQNARLKDALVRL 387 (1243)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666666666553
No 136
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=72.60 E-value=1.1e+02 Score=34.53 Aligned_cols=127 Identities=23% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccch-----------------
Q 008742 366 ALQLLAKLETANAD-LARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGI----------------- 427 (555)
Q Consensus 366 alaRLaKLE~e~qe-LAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas----------------- 427 (555)
..+|.++||.|... +.++= .++=+++-|.+|.++++.++ .+.......++....-....
T Consensus 314 s~EKIa~LEqEKEHw~LEaQ-L~kIKLEKEnkRiadLekev--ak~~v~~s~~e~~~l~~~~e~~se~s~~~~~e~~~~t 390 (518)
T PF10212_consen 314 SQEKIAKLEQEKEHWMLEAQ-LAKIKLEKENKRIADLEKEV--AKGQVAESSQESSVLSEASEQQSEASSQSVDEPLQPT 390 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--hccccccchhhhhhhcccccccccccccccccccccc
Q ss_pred ---------------------------hhhhhhhh------------------hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008742 428 ---------------------------YLKRLAAS------------------KGVEFEREILEAEYTFIADKIIQLEDK 462 (555)
Q Consensus 428 ---------------------------~l~ql~eL------------------~~~r~ErE~~reE~q~l~~kI~qLq~e 462 (555)
+...+.+| +.+..=-+..+.+...+...+..+...
T Consensus 391 ~l~gml~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~ 470 (518)
T PF10212_consen 391 SLSGMLTSTSEQESPEEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQN 470 (518)
T ss_pred cccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 008742 463 AKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQV 505 (555)
Q Consensus 463 a~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqL 505 (555)
...|++|+..||+-- |.-|.-|||||+.=.-+|
T Consensus 471 i~~LqDEL~TTr~NY----------E~QLs~MSEHLasmNeqL 503 (518)
T PF10212_consen 471 ISRLQDELETTRRNY----------EEQLSMMSEHLASMNEQL 503 (518)
T ss_pred HHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHHH
No 137
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=72.22 E-value=1e+02 Score=30.29 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHH
Q 008742 372 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTF 451 (555)
Q Consensus 372 KLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~ 451 (555)
..|.--++...+|..+|.++.-=..-+.+.++++..++..+..++..+.++.... .+++.|..-....+..
T Consensus 78 EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a---------~~AQ~el~eK~qLLea 148 (188)
T PF05335_consen 78 EAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVA---------EGAQQELAEKTQLLEA 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 3444455556666667777777777778888888888888888888877766544 3344444444555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 452 IADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 452 l~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
...+++.|..++..-+.|++.||...
T Consensus 149 Ak~Rve~L~~QL~~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 149 AKRRVEELQRQLQAARADYEKTKKAA 174 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888888764
No 138
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.96 E-value=1.3e+02 Score=36.69 Aligned_cols=65 Identities=15% Similarity=0.270 Sum_probs=39.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHhHHHhHHHHhhhhhhhcc
Q 008742 360 NNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQ-------QTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 360 ~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQ-------QVkl~e~~~EslKQeL~d~kQ 424 (555)
+.+|-|++.-..+-+.+..+|-++|.-+.+.+.+...+++.+.- ++..-+..++.|++++...++
T Consensus 663 krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~ 734 (1200)
T KOG0964|consen 663 KRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKG 734 (1200)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence 55666666666666777777777777777777666555554432 333344445566666655543
No 139
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=71.86 E-value=1.2 Score=49.47 Aligned_cols=99 Identities=22% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 008742 304 DAIKERENMVARLEGEKQSLEKILEERAK--QQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLA 381 (555)
Q Consensus 304 aaIkeRenmVa~LE~EKesLeKiL~er~k--QqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLA 381 (555)
.++|++..=|.+|+.+.++.-+=|.|... .+..++.+-...++++.-.++.+..+++..+.. +..++..+++|-
T Consensus 301 D~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~q----le~~k~qi~eLe 376 (713)
T PF05622_consen 301 DELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQ----LEEYKKQIQELE 376 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHH
Confidence 78889999999999999999998888875 777778887778888888888888887765543 233444555555
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 008742 382 RALAAAQKKLEMETNQVAELRQQTE 406 (555)
Q Consensus 382 eSLAaAQRkleeEk~rvaELqQQVk 406 (555)
.-+....++.+.-......|+.+++
T Consensus 377 ~~l~~~~~~~~~l~~e~~~L~ek~~ 401 (713)
T PF05622_consen 377 QKLSEESRRADKLEFENKQLEEKLE 401 (713)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333333333444443
No 140
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=71.62 E-value=40 Score=33.94 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc
Q 008742 485 IELKRRLGQLTDHLIQKQAQVFPL 508 (555)
Q Consensus 485 ~ELE~RLhQLTD~LIQKQTqLEAL 508 (555)
.|||+|+..|--.|+.|-+|+=.|
T Consensus 139 qemE~RIK~LhaqI~EKDAmIkVL 162 (205)
T PF12240_consen 139 QEMENRIKALHAQIAEKDAMIKVL 162 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999987655
No 141
>PLN03188 kinesin-12 family protein; Provisional
Probab=71.30 E-value=79 Score=39.09 Aligned_cols=71 Identities=30% Similarity=0.296 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHH--
Q 008742 336 KEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE-- 413 (555)
Q Consensus 336 qEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~E-- 413 (555)
.|--.||.|+-.|-+|| ++--|.|.||.+-| +|++.||+++.+-......|-+|++.+|--++
T Consensus 1180 ~enk~l~~qlrdtaeav--------~aagellvrl~eae-------ea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e 1244 (1320)
T PLN03188 1180 DENKSLQAQLRDTAEAV--------QAAGELLVRLKEAE-------EALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENE 1244 (1320)
T ss_pred HhhHHHHHHHhhHHHHH--------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777666665 34466777776433 67777887776666666666666655554442
Q ss_pred --HHhhhhhh
Q 008742 414 --ELSQRNSN 421 (555)
Q Consensus 414 --slKQeL~d 421 (555)
.+||.+..
T Consensus 1245 ~~t~~q~~ae 1254 (1320)
T PLN03188 1245 ISTLNQLVAE 1254 (1320)
T ss_pred HHHHHHHHhh
Confidence 45554433
No 142
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=70.41 E-value=30 Score=36.60 Aligned_cols=92 Identities=18% Similarity=0.132 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchh-------hhhh-----hhhhhhhhHHHHHH
Q 008742 379 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY-------LKRL-----AASKGVEFEREILE 446 (555)
Q Consensus 379 eLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~-------l~ql-----~eL~~~r~ErE~~r 446 (555)
-|..-|...|.--+.=|.-|..|+......+....++.++...+.....+ +-++ +....+..|.+.++
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777778888888999888888888888888776655432221 2121 35567888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 447 AEYTFIADKIIQLEDKAKKLEGNI 470 (555)
Q Consensus 447 eE~q~l~~kI~qLq~ea~KLEeEI 470 (555)
+.+..+.+-|--|+.+.++.+..-
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGD 116 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhh
Confidence 888888888888888877765443
No 143
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=69.91 E-value=1.5e+02 Score=31.30 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 437 GVEFEREILEAEYTFIADKIIQLEDKAK 464 (555)
Q Consensus 437 ~~r~ErE~~reE~q~l~~kI~qLq~ea~ 464 (555)
..+.+.+.++..+..+..++.+++.+..
T Consensus 321 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 321 EAEAEIASLEARVAELTARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555544433
No 144
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=69.48 E-value=1.2e+02 Score=29.71 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=15.2
Q ss_pred HhHHHHHHHHHHhHHHhHHHHhhhhhh
Q 008742 395 TNQVAELRQQTELKEVAHEELSQRNSN 421 (555)
Q Consensus 395 k~rvaELqQQVkl~e~~~EslKQeL~d 421 (555)
+.++..++++++.++..++.|.|++..
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~k 118 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEK 118 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666655555443
No 145
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=69.29 E-value=89 Score=28.33 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008742 341 LQTSMMETMDAFELEKQRH 359 (555)
Q Consensus 341 LQ~~m~ET~QalerEqe~h 359 (555)
.++.+..++..+.-+....
T Consensus 53 ~~e~l~~~~~~l~~d~~~l 71 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERL 71 (151)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3444555555544444433
No 146
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.78 E-value=2e+02 Score=32.27 Aligned_cols=130 Identities=21% Similarity=0.164 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHH----------------HHHHHHHhHHHhHHHHhhhhhhhcccch---hhhhhh-hhhhh
Q 008742 379 DLARALAAAQKKLEMETNQVA----------------ELRQQTELKEVAHEELSQRNSNTHQTGI---YLKRLA-ASKGV 438 (555)
Q Consensus 379 eLAeSLAaAQRkleeEk~rva----------------ELqQQVkl~e~~~EslKQeL~d~kQkas---~l~ql~-eL~~~ 438 (555)
.-++++++.+|...+++.-.. -|.|..--.--.++.+++++.++++..+ +...+. ++.-.
T Consensus 67 tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka 146 (542)
T KOG0993|consen 67 TKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKA 146 (542)
T ss_pred chHHHHHHHHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 346788888888877763211 1222222233344555555555554332 222221 11111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccchh
Q 008742 439 EFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIP 518 (555)
Q Consensus 439 r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~Q 518 (555)
+.--+.+|+=..-....|.-|.++..+-|.-|.-.-+..-||.. -||-.||.|= |+--|. -|
T Consensus 147 ~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~~h~a~-------slh~~t~lL~--------L~RD~s---~~ 208 (542)
T KOG0993|consen 147 KEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAKHHKAE-------SLHVFTDLLN--------LARDKS---EQ 208 (542)
T ss_pred HhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhcccch-------HHHHHHHHHH--------HhcCCc---hh
Confidence 11112222222223334444555555555544444444444432 3667787775 777773 45
Q ss_pred HHHHHHHH
Q 008742 519 VMRMLSLA 526 (555)
Q Consensus 519 LERLE~~~ 526 (555)
|..||.+.
T Consensus 209 l~~leel~ 216 (542)
T KOG0993|consen 209 LRQLEELD 216 (542)
T ss_pred hhHHHHhc
Confidence 77777665
No 147
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.64 E-value=1.3e+02 Score=35.37 Aligned_cols=58 Identities=29% Similarity=0.312 Sum_probs=46.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhh
Q 008742 360 NNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 417 (555)
Q Consensus 360 ~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQ 417 (555)
.....+...-+-+|+.+-.+|.-.|+.++-+++.-..++.++++.+..++..++.++.
T Consensus 588 ~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ke 645 (769)
T PF05911_consen 588 TSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKE 645 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778888999999999999999999999888888888888777777775544
No 148
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=68.55 E-value=1.4e+02 Score=30.30 Aligned_cols=161 Identities=21% Similarity=0.197 Sum_probs=93.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 008742 313 VARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAA---QK 389 (555)
Q Consensus 313 Va~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaA---QR 389 (555)
|+.|--.++.|+-.|+.|... +..++.++.+..|+....-...+.+-+-++.=..+++.--..|-+|-..| -|
T Consensus 6 va~lnrri~~leeele~aqEr----l~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adr 81 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQER----LATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADR 81 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555432 45566777777776554434445555555655666666666677765544 46
Q ss_pred HHHHHHhHHHHHHHHHHhHHHhHH----HHhhhhhhhcccchhhhhhhhhhhhhh-HHHHHHHHHHHHHHHHHH--HHHH
Q 008742 390 KLEMETNQVAELRQQTELKEVAHE----ELSQRNSNTHQTGIYLKRLAASKGVEF-EREILEAEYTFIADKIIQ--LEDK 462 (555)
Q Consensus 390 kleeEk~rvaELqQQVkl~e~~~E----slKQeL~d~kQkas~l~ql~eL~~~r~-ErE~~reE~q~l~~kI~q--Lq~e 462 (555)
+|++-..+..-+..+++..+--++ ...+=.-+.+..++.+.++.....+-+ ..|..++++..+++++-. ++.+
T Consensus 82 K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE 161 (205)
T KOG1003|consen 82 KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAE 161 (205)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHH
Confidence 777777666666655555443333 223333334455666677766655555 467788899999998855 3333
Q ss_pred -----HHHHHHHHHHHhhhc
Q 008742 463 -----AKKLEGNIEMTRKEI 477 (555)
Q Consensus 463 -----a~KLEeEI~~TKktl 477 (555)
+++|+.+++.+-..+
T Consensus 162 ~aERsVakLeke~DdlE~kl 181 (205)
T KOG1003|consen 162 FAERRVAKLEKERDDLEEKL 181 (205)
T ss_pred HHHHHHHHHcccHHHHHHhh
Confidence 666666666544443
No 149
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=68.15 E-value=1.7 Score=50.00 Aligned_cols=219 Identities=22% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 008742 304 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARA 383 (555)
Q Consensus 304 aaIkeRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeS 383 (555)
++|..-+..+-+|+.+.+.+-..++-.-..---+...++-.+-..|..++.+.+.-.-.+.+++.==.|||....+|-..
T Consensus 482 ~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ 561 (859)
T PF01576_consen 482 DALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQ 561 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455554444433332222111111234444444444444455555555556667666667888888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccch-------hh-hhhhh----hhh-------hhhHHHH
Q 008742 384 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGI-------YL-KRLAA----SKG-------VEFEREI 444 (555)
Q Consensus 384 LAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas-------~l-~ql~e----L~~-------~r~ErE~ 444 (555)
|..+.+...+-.+.+..++.+++-+...+++..+...++..... .+ ..+.. +.. ++.|++-
T Consensus 562 ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e 641 (859)
T PF01576_consen 562 LDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDE 641 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888877777776666665543211 11 11111 111 2223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHH-------HHHHHHHHHHHhhhhccccCCCCccch
Q 008742 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRR-------LGQLTDHLIQKQAQVFPLNFLPGRTTI 517 (555)
Q Consensus 445 ~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~R-------LhQLTD~LIQKQTqLEALSTEKnSLv~ 517 (555)
+..++..++.+...|-...++|+.+|.....+++.-...=..+..| +.+|++-|-+-|....-|-++|.+|.-
T Consensus 642 ~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~ 721 (859)
T PF01576_consen 642 LQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALER 721 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455556667777777666654333211222223 346777788888888888888998877
Q ss_pred hHHHH
Q 008742 518 PVMRM 522 (555)
Q Consensus 518 QLERL 522 (555)
|+-=|
T Consensus 722 q~keL 726 (859)
T PF01576_consen 722 QVKEL 726 (859)
T ss_dssp -----
T ss_pred HHHHH
Confidence 76544
No 150
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=68.02 E-value=43 Score=30.98 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=31.4
Q ss_pred HHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008742 398 VAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLED 461 (555)
Q Consensus 398 vaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ 461 (555)
+.+|+.++..++..+-.++-+|..+.... ...++..+.+.+++++..+..++..|+.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~-------t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEP-------TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555555554433 3344444555556666666666666554
No 151
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=67.75 E-value=3e+02 Score=33.78 Aligned_cols=87 Identities=29% Similarity=0.329 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH---
Q 008742 304 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADL--- 380 (555)
Q Consensus 304 aaIkeRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeL--- 380 (555)
+-|..|..-..+|++.++-..+.+++..+ .+..+.+|..-|+.-.+...+|+.++|+...+|
T Consensus 643 ~~~~~~~~~~r~lee~~~k~~k~le~~~~---------------~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~q 707 (1072)
T KOG0979|consen 643 AEIDIRSSTLRELEEKKQKERKELEEEQK---------------KLKLLKRERTKLNSELKSYQQRKERIENLVVDLDRQ 707 (1072)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777888877776666665544 456678899999999999999999999964443
Q ss_pred ----HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 008742 381 ----ARALAAAQKKLEMETNQVAELRQQTEL 407 (555)
Q Consensus 381 ----AeSLAaAQRkleeEk~rvaELqQQVkl 407 (555)
+..+ ++..++.+..+...++-++.+
T Consensus 708 kee~~~~~--~~~I~~~~~~~~~~~~~~~~~ 736 (1072)
T KOG0979|consen 708 EEEYAASE--AKKILDTEDMRIQSIRWHLEL 736 (1072)
T ss_pred HHHHHHHH--HHHHHhHHHHHHHHHHHHHHH
Confidence 3333 233444444444444444433
No 152
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=67.47 E-value=30 Score=30.43 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcc
Q 008742 367 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 367 laRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQ 424 (555)
++=+.+||+..+.+-..++.-|-.+++-|.+-..|.+.+..+...-+.|.++...+++
T Consensus 3 ~EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999998888888877776665543
No 153
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=67.36 E-value=85 Score=27.34 Aligned_cols=74 Identities=24% Similarity=0.362 Sum_probs=46.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 311 NMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQK 389 (555)
Q Consensus 311 nmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQR 389 (555)
.++.+|++-..+|++.+..+=...... ....+.++.+.-.+.+-.+-=..+.+|..+||..+.+++.-|-.|.-
T Consensus 8 ~al~rL~~aid~LE~~v~~r~~~~~~~-----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e 81 (89)
T PF13747_consen 8 AALTRLEAAIDRLEKAVDRRLERDRKR-----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIE 81 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777665533332 23333344444444444444556778888888888888888876643
No 154
>PRK11519 tyrosine kinase; Provisional
Probab=67.14 E-value=2.3e+02 Score=32.23 Aligned_cols=85 Identities=14% Similarity=0.078 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHH
Q 008742 372 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTF 451 (555)
Q Consensus 372 KLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~ 451 (555)
.++.+..++..-++.....+.+.--.+..|.++...++...+.++.++..+-. .-.++..++.+.+..++-|..
T Consensus 315 ~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~------~e~~~~~L~Re~~~~~~lY~~ 388 (719)
T PRK11519 315 NIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPK------TQQEIVRLTRDVESGQQVYMQ 388 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333445555555666666655555444555444443221 123667788889999999999
Q ss_pred HHHHHHHHHHH
Q 008742 452 IADKIIQLEDK 462 (555)
Q Consensus 452 l~~kI~qLq~e 462 (555)
+..+..+++..
T Consensus 389 lL~r~~e~~i~ 399 (719)
T PRK11519 389 LLNKQQELKIT 399 (719)
T ss_pred HHHHHHHHhHH
Confidence 99988887655
No 155
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=67.05 E-value=1.6e+02 Score=30.26 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008742 372 KLETANADLARALAAAQKKL 391 (555)
Q Consensus 372 KLE~e~qeLAeSLAaAQRkl 391 (555)
.+|.+.+++-+=+..++-++
T Consensus 63 ~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 63 QLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444454444
No 156
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=66.88 E-value=2.3e+02 Score=32.15 Aligned_cols=100 Identities=23% Similarity=0.249 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH----HHhH--HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 008742 308 ERENMVARLEGEKQSLEKILEERAK----QQVK--EASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLA 381 (555)
Q Consensus 308 eRenmVa~LE~EKesLeKiL~er~k----Qqaq--EassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLA 381 (555)
.-+..+..|+..+--|++-..+--- ||.= =.+.|...+-+.|+. +|+.+ =--+.++...++|-
T Consensus 328 kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIed------KY~vi-----LEKnd~~k~lqnLq 396 (527)
T PF15066_consen 328 KQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIED------KYRVI-----LEKNDIEKTLQNLQ 396 (527)
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh------HhHhh-----hhhhhHHHHHHHHH
Confidence 5566788888888888876665433 2221 145555555555543 34332 11256788899999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhh
Q 008742 382 RALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (555)
Q Consensus 382 eSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQe 418 (555)
++||-.|+-|.+-.+--.-|+-|++..++..--|+.+
T Consensus 397 e~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 397 EALANTQKHLQESRNEKETLQLELKKIKANYVHLQER 433 (527)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999999999988886655544
No 157
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=66.71 E-value=1.8e+02 Score=30.91 Aligned_cols=111 Identities=19% Similarity=0.243 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhHHHhHHHHhhhhhhhcccchh------------hhhhh-----------hhhhhhhHHHHHHHHHHHHH
Q 008742 397 QVAELRQQTELKEVAHEELSQRNSNTHQTGIY------------LKRLA-----------ASKGVEFEREILEAEYTFIA 453 (555)
Q Consensus 397 rvaELqQQVkl~e~~~EslKQeL~d~kQkas~------------l~ql~-----------eL~~~r~ErE~~reE~q~l~ 453 (555)
..+.|+.+++.++-.-..|+.+...+...... +.++. +|-.-..|...+.+||..|.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll 240 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL 240 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888888776633220 11111 22233346777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCch------hHH-HHHHHHHHHHHHHHHHHhhhhcc
Q 008742 454 DKIIQLEDKAKKLEGNIEMTRKEIEDPT------EVE-IELKRRLGQLTDHLIQKQAQVFP 507 (555)
Q Consensus 454 ~kI~qLq~ea~KLEeEI~~TKktl~~~T------ssE-~ELE~RLhQLTD~LIQKQTqLEA 507 (555)
.+|..|+.+.+.+=.|.+.+...+...= ..| .||+-||-..-..|.--|.+|-.
T Consensus 241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887776555555444431111 334 67788888888888777776644
No 158
>PRK09343 prefoldin subunit beta; Provisional
Probab=66.49 E-value=76 Score=28.65 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=24.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 435 SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMT 473 (555)
Q Consensus 435 L~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~T 473 (555)
...+....|.++.++..+..+..-|+.+..+++..|..+
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666667777766666666666666665543
No 159
>PTZ00121 MAEBL; Provisional
Probab=66.15 E-value=3.9e+02 Score=34.52 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=10.8
Q ss_pred CCCCCccccchhhhcc
Q 008742 93 KPKSTLTDSDWTELLG 108 (555)
Q Consensus 93 ~~~~~ltd~dwtell~ 108 (555)
.|.-|.+-.|||-|-|
T Consensus 885 ~p~Kt~~~KnwtYvSS 900 (2084)
T PTZ00121 885 IIRKTLDSKDWTYVSS 900 (2084)
T ss_pred ccccccccccceeecc
Confidence 4666777777876654
No 160
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=65.56 E-value=1.2e+02 Score=28.55 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhh-hcccchhhhhhhhhh-hhh
Q 008742 362 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN-THQTGIYLKRLAASK-GVE 439 (555)
Q Consensus 362 TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d-~kQkas~l~ql~eL~-~~r 439 (555)
....+-+.+++|-.+-+. .++...+.++.+.+.++..++.++++|.+ +.+-.. .++ ++.
T Consensus 52 ~~~~~~a~~~eLr~el~~-------------~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a------~~klD~n 112 (177)
T PF07798_consen 52 QEYLFKAAIAELRSELQN-------------SRKSEFAELRSENEKLQREIEKLRQELREEINKLRA------EVKLDLN 112 (177)
T ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 334455555555555543 45566777777777778888877777665 211110 111 344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhh
Q 008742 440 FEREILEAEYTFIADKIIQLEDK----AKKLEGNIEMTRKE 476 (555)
Q Consensus 440 ~ErE~~reE~q~l~~kI~qLq~e----a~KLEeEI~~TKkt 476 (555)
.|+-..++++.....+|..+..+ ...|+.+|+.+|.+
T Consensus 113 ~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 113 LEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888888776554 33455555555544
No 161
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.18 E-value=26 Score=40.16 Aligned_cols=71 Identities=30% Similarity=0.393 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch--hHHHH-HHHHHHHHHHHHHHHhhhhccccCC
Q 008742 441 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT--EVEIE-LKRRLGQLTDHLIQKQAQVFPLNFL 511 (555)
Q Consensus 441 ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~T--ssE~E-LE~RLhQLTD~LIQKQTqLEALSTE 511 (555)
=.+.+++|++.|...|.+|+.+..+|+.+++.+++.+...- .-|++ +++|..-|+-.|.-|-+++|-|--+
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~ 503 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888888888888888888888888888875333 33544 8899999999999999999987543
No 162
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=64.81 E-value=1.3e+02 Score=29.20 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=41.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 387 AQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAK 464 (555)
Q Consensus 387 AQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~ 464 (555)
+-++.-+......++..+++.++...+.|..++.+++.....+..- .-+....+..+..+|+.++.....+|+++..
T Consensus 111 ~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~-~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 111 GMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKR-EEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344333333456777777777777777777777766554322211 1111223445556666666666666665543
No 163
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=64.75 E-value=4.6 Score=48.60 Aligned_cols=31 Identities=45% Similarity=0.452 Sum_probs=19.2
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCccHHH
Q 008742 250 VLNDSKRGSSSTSEDGSDSNSDSSSSESESE 280 (555)
Q Consensus 250 ~s~~~~~~~~~~~~~~sdsd~~~s~~dse~e 280 (555)
-+.+....+.|.|+.+||||++||++|||.-
T Consensus 436 s~~~S~SsS~SESsS~SDSESESSSSDSE~n 466 (1191)
T PF05110_consen 436 SSSSSSSSSESESSSSSDSESESSSSDSEEN 466 (1191)
T ss_pred cCCCCCCCCCCCccCcccccccccccccccc
Confidence 3444433444566667777777788888753
No 164
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=64.70 E-value=80 Score=26.21 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=24.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 435 SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIE 471 (555)
Q Consensus 435 L~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~ 471 (555)
...++...+.+..++..+..++..+..+..+++..++
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777777777777777777666666654
No 165
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=64.61 E-value=1.3e+02 Score=28.61 Aligned_cols=21 Identities=5% Similarity=0.134 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhhhcccc
Q 008742 489 RRLGQLTDHLIQKQAQVFPLN 509 (555)
Q Consensus 489 ~RLhQLTD~LIQKQTqLEALS 509 (555)
..|..+-+..-..+.+.+|..
T Consensus 165 ~~~er~e~ki~~~ea~a~a~~ 185 (221)
T PF04012_consen 165 DSFERMEEKIEEMEARAEASA 185 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 166
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=64.31 E-value=68 Score=32.68 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=22.4
Q ss_pred HHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhccc
Q 008742 390 KLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT 425 (555)
Q Consensus 390 kleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQk 425 (555)
.+.....+++.++.+++.++..++.++..+.++.=+
T Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~ 187 (370)
T PRK11578 152 ELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIV 187 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEE
Confidence 333333445566667777777777777777665533
No 167
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=64.14 E-value=2.2 Score=47.54 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008742 435 SKGVEFEREILEAEYTFIADKIIQLE 460 (555)
Q Consensus 435 L~~~r~ErE~~reE~q~l~~kI~qLq 460 (555)
|+....=.+.++++...|..++..++
T Consensus 276 Lr~~~~n~elLeEe~~sLq~kl~~~E 301 (722)
T PF05557_consen 276 LRQSQENVELLEEEKRSLQRKLERLE 301 (722)
T ss_dssp --------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33344456677777777777776533
No 168
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=64.14 E-value=2.1e+02 Score=30.62 Aligned_cols=124 Identities=17% Similarity=0.116 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhh-------hhhHHHHHH
Q 008742 374 ETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKG-------VEFEREILE 446 (555)
Q Consensus 374 E~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~-------~r~ErE~~r 446 (555)
....+.|.++...-|+.+.+=.....++ ...+.+.+.++|...-..+.+++...++.+ -=++.-+.-
T Consensus 178 q~~~~~l~~a~~~yq~a~~ey~~~~~~~------~~ks~e~~~~~l~~~~~~g~~v~s~re~~d~W~~~ae~~~~e~~~S 251 (320)
T TIGR01834 178 QSQLQRLFRDWMEYQQAMADYQLLEADI------GYKSFAALMSDLLARAKSGKPVKTAKALYDLWVIAAEEAYAEVFAS 251 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444555566555555554443333332 233445555556554444444444333221 113556667
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhccCchhHH--------HHHHHHHHHHHHHHHHHhh
Q 008742 447 AEYTFIADKIIQLEDKAKK-LEGNIEMTRKEIEDPTEVE--------IELKRRLGQLTDHLIQKQA 503 (555)
Q Consensus 447 eE~q~l~~kI~qLq~ea~K-LEeEI~~TKktl~~~TssE--------~ELE~RLhQLTD~LIQKQT 503 (555)
+++.+..+++..-..+.++ +.+-++.+=+.|--||++| .|||+|+++|...|=++..
T Consensus 252 ~efak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 252 EENAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8999999999876666555 6666666777777788665 4777888777776655443
No 169
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.04 E-value=1.3e+02 Score=30.39 Aligned_cols=30 Identities=33% Similarity=0.356 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008742 447 AEYTFIADKIIQLEDKAKKLEGNIEMTRKE 476 (555)
Q Consensus 447 eE~q~l~~kI~qLq~ea~KLEeEI~~TKkt 476 (555)
.+.......|.++..+...|..+|..+|++
T Consensus 74 ~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 74 SERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444555555555555555
No 170
>PF13514 AAA_27: AAA domain
Probab=62.86 E-value=3.3e+02 Score=32.53 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 366 ALQLLAKLETANADLARALAAAQKKL 391 (555)
Q Consensus 366 alaRLaKLE~e~qeLAeSLAaAQRkl 391 (555)
.-.++..++.+...+...+..++..+
T Consensus 806 l~~~~~~~~~~~~~~~~~l~~~~~~l 831 (1111)
T PF13514_consen 806 LQEQLEELEEELEQAEEELEELEAEL 831 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 171
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=62.59 E-value=2.8e+02 Score=31.72 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=27.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 434 ASKGVEFEREILEAEYTFIADKIIQLEDKAKK 465 (555)
Q Consensus 434 eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~K 465 (555)
.++.++-|.+.-++|++.|..++..|+.+..|
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 56778889999999999999999999888665
No 172
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.52 E-value=2.7e+02 Score=31.52 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=13.5
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q 008742 313 VARLEGEKQSLEKILEERA 331 (555)
Q Consensus 313 Va~LE~EKesLeKiL~er~ 331 (555)
|+.|+.+.+-++-.+++..
T Consensus 233 ~eel~eq~eeneel~ae~k 251 (521)
T KOG1937|consen 233 VEELTEQNEENEELQAEYK 251 (521)
T ss_pred HHHHHhhhhhHHHHHHHHH
Confidence 8888877777766666653
No 173
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=62.13 E-value=2.7e+02 Score=31.39 Aligned_cols=104 Identities=19% Similarity=0.175 Sum_probs=72.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH---------------------------HHHHHHHHHH----H
Q 008742 310 ENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMME---------------------------TMDAFELEKQ----R 358 (555)
Q Consensus 310 enmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~E---------------------------T~QalerEqe----~ 358 (555)
=.|-..||.|-+.|.--|=-|-.+=.+|-..||.++.| -++-|+-|-+ .
T Consensus 189 V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~ 268 (552)
T KOG2129|consen 189 VQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTY 268 (552)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777776666654444555556666665541 1222344444 4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHH
Q 008742 359 HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE 413 (555)
Q Consensus 359 h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~E 413 (555)
...+|-++-+-+..+-+|-.+.-+...+.||+|..+.-|-.-|-+++.-.+..++
T Consensus 269 l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsessle 323 (552)
T KOG2129|consen 269 LSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLE 323 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4567778888888888888999999999999999999888888888887777776
No 174
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=62.06 E-value=3.3e+02 Score=32.25 Aligned_cols=159 Identities=20% Similarity=0.201 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHH---------HHHHH-HHHHHHH
Q 008742 289 LKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMM---------ETMDA-FELEKQR 358 (555)
Q Consensus 289 ~re~~laE~~aAKaaaaIkeRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~---------ET~Qa-lerEqe~ 358 (555)
=|++.|+=-+--|+-. -+.++.|.+|.+...+|++.+......++----+||++.- .||+. +.+.++.
T Consensus 311 WREKVFaLmVQLkaQe--leh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea 388 (739)
T PF07111_consen 311 WREKVFALMVQLKAQE--LEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEA 388 (739)
T ss_pred HHHHHHHHHHHhhHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455555433222211 1566778888888888888887766655544444444433 12221 3444433
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhh-------------hccc
Q 008742 359 HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN-------------THQT 425 (555)
Q Consensus 359 h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d-------------~kQk 425 (555)
+...+. +-...|..-.-++++|..-|-.+.-....|...-.++..+.+-+.-.-.++.- +.+.
T Consensus 389 ~~~lqq----q~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe 464 (739)
T PF07111_consen 389 RRRLQQ----QTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQE 464 (739)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhc
Confidence 333221 11223334455666777766666666655555545555544444322222222 1111
Q ss_pred ch-----hhhhh-hhhhhhhhHHHHHHHHHHHHH
Q 008742 426 GI-----YLKRL-AASKGVEFEREILEAEYTFIA 453 (555)
Q Consensus 426 as-----~l~ql-~eL~~~r~ErE~~reE~q~l~ 453 (555)
.. +...+ .+|+-++.||+.+-++++...
T Consensus 465 ~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa 498 (739)
T PF07111_consen 465 QCPPSPPSVTDLSLELQQLREERDRLDAELQLSA 498 (739)
T ss_pred cCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11 12233 267778888888888877433
No 175
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.61 E-value=2.3e+02 Score=32.57 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhh----
Q 008742 357 QRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRL---- 432 (555)
Q Consensus 357 e~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql---- 432 (555)
+.+..+-.|+..|+.+.=+-..+=-++|...=+.+.+...-+...-+..++++---..++.-...|+.--+...+-
T Consensus 213 d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~ 292 (581)
T KOG0995|consen 213 DNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHM 292 (581)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHH
Q ss_pred -hhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhhhccCch----hHHHHHHHH
Q 008742 433 -AASKGVEFEREILEAEYTFIADKIIQLEDK-----------------AKKLEGNIEMTRKEIEDPT----EVEIELKRR 490 (555)
Q Consensus 433 -~eL~~~r~ErE~~reE~q~l~~kI~qLq~e-----------------a~KLEeEI~~TKktl~~~T----ssE~ELE~R 490 (555)
..+..+.-|.+.-++|+..+..++..|+.. ..++..++.++..++.--+ ..+.|.+++
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~ 372 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDF 372 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 008742 491 LGQLTDHLIQ 500 (555)
Q Consensus 491 LhQLTD~LIQ 500 (555)
.+++-..+|+
T Consensus 373 f~~le~~~~~ 382 (581)
T KOG0995|consen 373 FKELEKKFID 382 (581)
T ss_pred HHHHHHHHHH
No 176
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=61.49 E-value=1.3e+02 Score=27.27 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=8.1
Q ss_pred HHHhhHHHHHHHHHHHHH
Q 008742 315 RLEGEKQSLEKILEERAK 332 (555)
Q Consensus 315 ~LE~EKesLeKiL~er~k 332 (555)
.|+.+..++....++...
T Consensus 7 ~l~~e~~~~~~~~~~~~~ 24 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEE 24 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455554444444333
No 177
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=61.38 E-value=98 Score=29.49 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhccc-----chhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008742 386 AAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT-----GIYLKRLAASKGVEFEREILEAEYTFIADKIIQLE 460 (555)
Q Consensus 386 aAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQk-----as~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq 460 (555)
+|++.+-....++.++.+.+..++.++.+|++...+-.+. ....-.+.+++.|+++.-.+++--..+..++....
T Consensus 15 rAe~a~~~q~~~l~~a~~~~~~a~~~l~dyr~wr~~ee~rly~~~~~~~v~~kele~~~~qv~~Lr~~e~~le~~~~~a~ 94 (152)
T PF07321_consen 15 RAERALRRQERRLQEARAALQQAEQELADYRQWRQREEERLYAEIQGKVVSLKELEKWQQQVASLREREAELEQQLAEAE 94 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455566666777788888888888888887776663332 11222334667777777777776666666666655
Q ss_pred HHHHH
Q 008742 461 DKAKK 465 (555)
Q Consensus 461 ~ea~K 465 (555)
.....
T Consensus 95 ~~~~~ 99 (152)
T PF07321_consen 95 EQLEQ 99 (152)
T ss_pred HHHHH
Confidence 44333
No 178
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=60.45 E-value=3.7e+02 Score=32.75 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=7.5
Q ss_pred ccccCCccccccc
Q 008742 68 GKLQSDPNVKNVY 80 (555)
Q Consensus 68 gkl~sd~~~~~~~ 80 (555)
|-+|.|..-.||+
T Consensus 145 ~IVHRDLKPeNIL 157 (1021)
T PTZ00266 145 RVLHRDLKPQNIF 157 (1021)
T ss_pred CceeccCcHHHeE
Confidence 4566666555554
No 179
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=60.40 E-value=37 Score=33.81 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=25.5
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcc
Q 008742 389 KKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 389 RkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQ 424 (555)
-++..-+.-++-+++||..++.-+.+=+++|+.++|
T Consensus 160 ~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 160 KNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444566677788888888888888888877664
No 180
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=59.80 E-value=9.5 Score=40.36 Aligned_cols=122 Identities=13% Similarity=0.152 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHH
Q 008742 365 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREI 444 (555)
Q Consensus 365 EalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~ 444 (555)
...+||..||.....|..+|..+..++.+=..+...+.-.+...+..+.++.-.++.++-.-..+.. ...-
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lss---------sVs~ 102 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSS---------SVSS 102 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hHHh
Confidence 4578999999999999999988887777766666666666666666666555555555433222211 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHH
Q 008742 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLT 495 (555)
Q Consensus 445 ~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLT 495 (555)
+..-+......|..|+....-+..+|--+|.+...-.-.=+.|++|+..|.
T Consensus 103 lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 103 LSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 133344455566667777777777777777776222222378999998874
No 181
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=59.68 E-value=3e+02 Score=31.04 Aligned_cols=61 Identities=7% Similarity=0.020 Sum_probs=34.9
Q ss_pred HHHHHhHHHhHHHHhhhhhhhcccchhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008742 402 RQQTELKEVAHEELSQRNSNTHQTGIYLK-RLAASKGVEFEREILEAEYTFIADKIIQLEDK 462 (555)
Q Consensus 402 qQQVkl~e~~~EslKQeL~d~kQkas~l~-ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~e 462 (555)
+.+...+.....++++.+.++++....+. ...++..++.|.+..+.-|..+..+..+.+..
T Consensus 344 ~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 344 LMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444455555555554433222 22356677777777777777777777665554
No 182
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=59.11 E-value=3.7e+02 Score=31.86 Aligned_cols=49 Identities=29% Similarity=0.373 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcc
Q 008742 369 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 369 RLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQ 424 (555)
+|.++-++|..|+.+| .+..+-+.+|...-.-+++.+..|..+|.-++.
T Consensus 100 ~l~~~~~e~~~l~~~l-------~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~ek 148 (769)
T PF05911_consen 100 RLAESAAENSALSKAL-------QEKEKLIAELSEEKSQAEAEIEDLMARLESTEK 148 (769)
T ss_pred HHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444445555555554 444445555555555555555555555555443
No 183
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.64 E-value=38 Score=37.62 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhh------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 396 NQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLA------ASKGVEFEREILEAEYTFIADKIIQLEDKA 463 (555)
Q Consensus 396 ~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~------eL~~~r~ErE~~reE~q~l~~kI~qLq~ea 463 (555)
.++.+++.++..+...-+.|+.|...++++...+++-+ +-.++..|++.+..+++.+.++|.+|+.+.
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666555443311 123566677777888888888887776654
No 184
>PRK01156 chromosome segregation protein; Provisional
Probab=58.41 E-value=3.4e+02 Score=31.21 Aligned_cols=84 Identities=11% Similarity=0.041 Sum_probs=41.3
Q ss_pred HHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchh-------hhhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 393 METNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY-------LKRL-AASKGVEFEREILEAEYTFIADKIIQLEDKAK 464 (555)
Q Consensus 393 eEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~-------l~ql-~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~ 464 (555)
.......+++.++...+..++.++.++..+.....- +..+ ..+..++-+.+.++..+..+.+++..++.+..
T Consensus 633 ~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~ 712 (895)
T PRK01156 633 NKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRIN 712 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333444444444444455555555555444332221 1111 13344555555666666666666666666655
Q ss_pred HHHHHHHHHhhh
Q 008742 465 KLEGNIEMTRKE 476 (555)
Q Consensus 465 KLEeEI~~TKkt 476 (555)
++++++...++.
T Consensus 713 ~l~eel~~~~~~ 724 (895)
T PRK01156 713 ELSDRINDINET 724 (895)
T ss_pred HHHHHHHHHHHH
Confidence 565555544444
No 185
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=58.00 E-value=1.7e+02 Score=27.65 Aligned_cols=49 Identities=22% Similarity=0.219 Sum_probs=29.9
Q ss_pred HHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 008742 398 VAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIAD 454 (555)
Q Consensus 398 vaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~ 454 (555)
-.+++.+.-..++.|.++|.+++.+... ....++.+.+.++.++..+..
T Consensus 46 k~d~e~~~~~~~a~~~eLr~el~~~~k~--------~~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 46 KSDLENQEYLFKAAIAELRSELQNSRKS--------EFAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 3567777788888899999988864322 223344455555555544444
No 186
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=57.95 E-value=3.1e+02 Score=30.69 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 453 ADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 453 ~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
..++.++..+..+++++|....+.+
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665554
No 187
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=57.63 E-value=3.2e+02 Score=30.79 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 008742 399 AELRQQT 405 (555)
Q Consensus 399 aELqQQV 405 (555)
.+|+++.
T Consensus 291 ~~L~~~l 297 (754)
T TIGR01005 291 QRLRERQ 297 (754)
T ss_pred HHHHHHH
Confidence 3333333
No 188
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=56.75 E-value=2.1e+02 Score=31.77 Aligned_cols=88 Identities=26% Similarity=0.299 Sum_probs=58.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH---HHHHHHHH--------HHHHHHH
Q 008742 326 ILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANAD---LARALAAA--------QKKLEME 394 (555)
Q Consensus 326 iL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qe---LAeSLAaA--------QRkleeE 394 (555)
.|-.-=.+-+.|-+.||-+=++..+.+.--|+..-...-|+.+|+++|.++-.. ||=-=.+| .+.+++.
T Consensus 289 ~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeek 368 (442)
T PF06637_consen 289 SLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEK 368 (442)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333456778888999999999998888999999999999999999876432 22111122 1234555
Q ss_pred HhHHHHHHHHHHhHHHhHH
Q 008742 395 TNQVAELRQQTELKEVAHE 413 (555)
Q Consensus 395 k~rvaELqQQVkl~e~~~E 413 (555)
++.++.|+-|+...-.+++
T Consensus 369 kreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 369 KRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 5566666666666666655
No 189
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=56.54 E-value=2.8e+02 Score=29.69 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=36.4
Q ss_pred hhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH
Q 008742 435 SKGVEFEREILEAEYTFIAD----KIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHL 498 (555)
Q Consensus 435 L~~~r~ErE~~reE~q~l~~----kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~L 498 (555)
+..++.|+..+++.+..... ++.++-.+.+.+.++--+.++.+ +.|+|+|. +|+-||
T Consensus 231 I~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L------~~E~erre-al~R~l 291 (310)
T PF09755_consen 231 IRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKL------QREVERRE-ALCRHL 291 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHHH
Confidence 34666777777766665543 34445555677888877787777 77777764 344443
No 190
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=56.23 E-value=4.2e+02 Score=31.69 Aligned_cols=21 Identities=14% Similarity=0.011 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008742 441 EREILEAEYTFIADKIIQLED 461 (555)
Q Consensus 441 ErE~~reE~q~l~~kI~qLq~ 461 (555)
+.+.+++.++.+...+.+++.
T Consensus 778 ~~~~l~~~i~~~~~~~~~~~~ 798 (1047)
T PRK10246 778 TLTQLEQLKQNLENQRQQAQT 798 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555544444
No 191
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=55.70 E-value=71 Score=34.50 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008742 369 LLAKLETANADLARALAAAQK 389 (555)
Q Consensus 369 RLaKLE~e~qeLAeSLAaAQR 389 (555)
++..|+.+...|-..+++++-
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~ 92 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLED 92 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 192
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=55.35 E-value=3.1e+02 Score=29.82 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHH
Q 008742 373 LETANADLARALAAAQKKLEMETNQV-AELRQQT 405 (555)
Q Consensus 373 LE~e~qeLAeSLAaAQRkleeEk~rv-aELqQQV 405 (555)
++..+.+..+-+..|+..++.|+.++ .+|+.++
T Consensus 88 ~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei 121 (445)
T PRK13428 88 RAQADAEAERIKVQGARQVQLLRAQLTRQLRLEL 121 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555554444 4444443
No 193
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=54.35 E-value=3.3e+02 Score=29.96 Aligned_cols=44 Identities=23% Similarity=0.150 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHH-HHhHHHHHHHHHHhHHHhHHHHhhhhhhhccc
Q 008742 382 RALAAAQKKLEM-ETNQVAELRQQTELKEVAHEELSQRNSNTHQT 425 (555)
Q Consensus 382 eSLAaAQRklee-Ek~rvaELqQQVkl~e~~~EslKQeL~d~kQk 425 (555)
..|..+.+.+.. -.....++.+.+......++++..+|.+|...
T Consensus 251 ~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~ 295 (563)
T TIGR00634 251 EGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDE 295 (563)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444433 33455667777777777777777777776654
No 194
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=53.87 E-value=46 Score=33.71 Aligned_cols=8 Identities=63% Similarity=0.850 Sum_probs=3.1
Q ss_pred CCCCCCCC
Q 008742 264 DGSDSNSD 271 (555)
Q Consensus 264 ~~sdsd~~ 271 (555)
++||+|+|
T Consensus 133 ~~sd~~~d 140 (244)
T PF04889_consen 133 DESDDDSD 140 (244)
T ss_pred cccccccc
Confidence 33344433
No 195
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=53.33 E-value=1.1e+02 Score=25.70 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=30.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008742 434 ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 474 (555)
Q Consensus 434 eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TK 474 (555)
.+..+..||+..--.+..++..+..|+.+..-++.+++.++
T Consensus 27 ~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 27 ENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677778888888888888888888887777766665443
No 196
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=53.00 E-value=3.2e+02 Score=29.28 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhh
Q 008742 373 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (555)
Q Consensus 373 LE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d 421 (555)
|.|+.+.=---|.-.+-.|.--+.++.-|.|.++..+..+|...+....
T Consensus 86 lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 86 LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333333333344445555566677778888888888888877777764
No 197
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.89 E-value=1.1e+02 Score=32.60 Aligned_cols=98 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-----------------hHHHHHHHHHHhHHHhHHHHhhhhhhhcccch-----------hhhh-----h
Q 008742 386 AAQKKLEMET-----------------NQVAELRQQTELKEVAHEELSQRNSNTHQTGI-----------YLKR-----L 432 (555)
Q Consensus 386 aAQRkleeEk-----------------~rvaELqQQVkl~e~~~EslKQeL~d~kQkas-----------~l~q-----l 432 (555)
+++|+++.|. .+++..++..+..+..+.+.+..|..+++--+ .+|. +
T Consensus 193 ~~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~ 272 (359)
T PF10498_consen 193 PAEWKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLI 272 (359)
T ss_pred HHHHHHHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhH
Q 008742 433 AASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEV 483 (555)
Q Consensus 433 ~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~Tss 483 (555)
.+.+..+.+..-.++.|+.+.+-+..+..+...|-++++..|..|.....+
T Consensus 273 ~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~ 323 (359)
T PF10498_consen 273 QEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSS 323 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
No 198
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=52.33 E-value=3.8e+02 Score=30.05 Aligned_cols=45 Identities=20% Similarity=0.188 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--ch---hHHHHHHHHHH
Q 008742 448 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIED--PT---EVEIELKRRLG 492 (555)
Q Consensus 448 E~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~--~T---ssE~ELE~RLh 492 (555)
++..|..+|.+|...-.+|..|-....+.|-. +| ==|+-|++=|.
T Consensus 166 ~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerILE 215 (475)
T PRK10361 166 ERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLE 215 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHHH
Confidence 44556666666666666666666666666622 33 12566666554
No 199
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=52.16 E-value=2.5e+02 Score=27.80 Aligned_cols=23 Identities=9% Similarity=-0.088 Sum_probs=10.3
Q ss_pred HHHHHHhHHHhHHHHhhhhhhhc
Q 008742 401 LRQQTELKEVAHEELSQRNSNTH 423 (555)
Q Consensus 401 LqQQVkl~e~~~EslKQeL~d~k 423 (555)
++.+++.++..++.++.++.+|+
T Consensus 113 ~~~~~~~a~~~l~~a~~~~~r~~ 135 (334)
T TIGR00998 113 LKIKLEQAREKLLQAELDLRRRV 135 (334)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 33344444444444444444443
No 200
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.77 E-value=1.4e+02 Score=27.60 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 008742 441 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNF 510 (555)
Q Consensus 441 ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALST 510 (555)
|...+..++..+..++..|+.+.+.++.++......+ |. .||...+.+|+.-+-+-+..|+.|-+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~---t~--~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEP---TN--EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455567788888888888888888888888777665 22 46778888888888888888888877
No 201
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.66 E-value=1.8e+02 Score=28.61 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhccc
Q 008742 365 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT 425 (555)
Q Consensus 365 EalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQk 425 (555)
..=.|..++..+.+.|..-+....+..+--......++.+|...+..++++++++......
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555555555555555555555555555555555555555555554443
No 202
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.64 E-value=86 Score=30.34 Aligned_cols=68 Identities=24% Similarity=0.300 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 008742 441 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLN 509 (555)
Q Consensus 441 ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALS 509 (555)
+.-..+..+..+..+|..++.+...++..|..++....+. .--.+|-.+|.+|...+-+.+.+|++++
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777777777777777778888776665333 3237788999999999999999998554
No 203
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=51.28 E-value=49 Score=37.72 Aligned_cols=58 Identities=17% Similarity=0.286 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch----------hHHHHHHHHHHHHHHHHH
Q 008742 442 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT----------EVEIELKRRLGQLTDHLI 499 (555)
Q Consensus 442 rE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~T----------ssE~ELE~RLhQLTD~LI 499 (555)
.|++++|.++|+.|.++|+-+-.||--|-.-|.+-..+|- ..++|+-+||..+---||
T Consensus 25 ldRIKdEfqflqaqyhslkleceKlA~EKteMqRhYvmYyEmSygLniemhKq~EI~KRLn~i~aQl~ 92 (705)
T KOG0639|consen 25 LDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTICAQLI 92 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheeeeeeeccccchhhHHHHHHHHHHHHHHHHHh
Confidence 5778999999999999999999887655555555532222 347999999987766555
No 204
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=50.46 E-value=3.1e+02 Score=28.47 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh
Q 008742 338 ASELQTSMMETMDAFELEKQRHNNT 362 (555)
Q Consensus 338 assLQ~~m~ET~QalerEqe~h~~T 362 (555)
+..++.++.+..+++..=++.|+..
T Consensus 180 l~~~~~~l~~ae~~l~~fr~~~~i~ 204 (444)
T TIGR03017 180 IAALREDLARAQSKLSAYQQEKGIV 204 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5566666666666666656666554
No 205
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=49.72 E-value=2.6e+02 Score=27.35 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008742 365 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTE 406 (555)
Q Consensus 365 EalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVk 406 (555)
+.=.+++........+.....+|+-.+.+=..+..+++.++.
T Consensus 96 ~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 96 ELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555555555555555555555555555555555444
No 206
>PF13514 AAA_27: AAA domain
Probab=48.36 E-value=5.5e+02 Score=30.73 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008742 444 ILEAEYTFIADKIIQLEDK 462 (555)
Q Consensus 444 ~~reE~q~l~~kI~qLq~e 462 (555)
.+.+.+..+..++.+++.+
T Consensus 805 ~l~~~~~~~~~~~~~~~~~ 823 (1111)
T PF13514_consen 805 RLQEQLEELEEELEQAEEE 823 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333
No 207
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.82 E-value=2.1e+02 Score=27.75 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 008742 439 EFEREILEAEYTFIADKIIQLED 461 (555)
Q Consensus 439 r~ErE~~reE~q~l~~kI~qLq~ 461 (555)
+.+...+++....-+|-|..|+.
T Consensus 141 ~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 141 KEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Confidence 33344444444444444444443
No 208
>PLN02939 transferase, transferring glycosyl groups
Probab=47.42 E-value=6.2e+02 Score=31.00 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=52.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhhccCch---hHHHHHHHHHHHHHHH
Q 008742 436 KGVEFEREILEAEYTFIADKIIQLEDK---------------AKKLEGNIEMTRKEIEDPT---EVEIELKRRLGQLTDH 497 (555)
Q Consensus 436 ~~~r~ErE~~reE~q~l~~kI~qLq~e---------------a~KLEeEI~~TKktl~~~T---ssE~ELE~RLhQLTD~ 497 (555)
-.++-||-.+++.++.|..++..-++. +..|+.=+..+++..++.. .+--+|.+++..|-+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (977)
T PLN02939 260 FKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEAS 339 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 345667777888888887777543333 4445666666666655544 2237788888887777
Q ss_pred HHHHhhhhccccCCCCccc-hhHHHHH
Q 008742 498 LIQKQAQVFPLNFLPGRTT-IPVMRML 523 (555)
Q Consensus 498 LIQKQTqLEALSTEKnSLv-~QLERLE 523 (555)
| +-+-+.-+++|+--|. -++++||
T Consensus 340 ~--~~~~~~~~~~~~~~~~~~~~~~~~ 364 (977)
T PLN02939 340 L--KEANVSKFSSYKVELLQQKLKLLE 364 (977)
T ss_pred H--HHhhHhhhhHHHHHHHHHHHHHHH
Confidence 6 3455555677755443 3344444
No 209
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=47.34 E-value=2.8e+02 Score=27.10 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhh
Q 008742 378 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 419 (555)
Q Consensus 378 qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL 419 (555)
-.||=++-.|-|+-+.+-.||--|+.+++..|++.-.|--+|
T Consensus 67 saLALgVR~A~RQ~q~q~~rV~~Lqd~~~~hksa~~aLas~L 108 (152)
T PF15186_consen 67 SALALGVRFAARQRQLQARRVQWLQDQAEEHKSAAWALASEL 108 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888889999999999999999999999999877554433
No 210
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=47.33 E-value=3.5e+02 Score=28.20 Aligned_cols=103 Identities=21% Similarity=0.178 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccc
Q 008742 347 ETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG 426 (555)
Q Consensus 347 ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQka 426 (555)
...+.|..|- ..+..|+.+++|-..+..--..+-.++..++-+++.=...+..+..-.+.++.-.+.-+++|...+++.
T Consensus 135 ~LydlL~kE~-~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL 213 (267)
T PF10234_consen 135 SLYDLLGKEV-ELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRL 213 (267)
T ss_pred HHHHHHhchH-hHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334466666 566778888888888777777777777777777777666666665555555555555555555554443
Q ss_pred hhhhhhhhhh-hhhhHHHHHHHHHHHHH
Q 008742 427 IYLKRLAASK-GVEFEREILEAEYTFIA 453 (555)
Q Consensus 427 s~l~ql~eL~-~~r~ErE~~reE~q~l~ 453 (555)
..+..+ + +.-.|-|.+++|++.+=
T Consensus 214 ~sLq~v---RPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 214 QSLQSV---RPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHHHhc---ChHHHHHHHHHHHHHHHHH
Confidence 222111 1 12225555555555543
No 211
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.75 E-value=6.7e+02 Score=31.22 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccch
Q 008742 386 AAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGI 427 (555)
Q Consensus 386 aAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas 427 (555)
.-|--++.+..+..+|+..++.++...+.+.....++...-+
T Consensus 392 ~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~ 433 (1141)
T KOG0018|consen 392 SDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKIT 433 (1141)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666777888888888888888777777776665544
No 212
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=46.60 E-value=90 Score=26.47 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008742 367 LQLLAKLETANADLARALAAAQKKLEMETNQVAELR 402 (555)
Q Consensus 367 laRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELq 402 (555)
++-+.+||...+.+.+.+++-|...++-+.+...|.
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 466788899999999888888887776666666665
No 213
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=46.39 E-value=1.6e+02 Score=25.22 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 008742 438 VEFEREILEAEYTFIADKIIQ 458 (555)
Q Consensus 438 ~r~ErE~~reE~q~l~~kI~q 458 (555)
+.++.+-++++...+..+|.+
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~ 61 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGK 61 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 333444444444444444433
No 214
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.06 E-value=6.3e+02 Score=30.75 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=57.8
Q ss_pred HHHHHHHhhHHHHHHH------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 008742 311 NMVARLEGEKQSLEKI------LEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARAL 384 (555)
Q Consensus 311 nmVa~LE~EKesLeKi------L~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSL 384 (555)
.++..|++=+..+..- ...-++.-|.+....+.+....+-.+.-+.+..+++ +..|+.++.+|-+.+
T Consensus 622 kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~-------~~~l~~e~eeL~~~v 694 (970)
T KOG0946|consen 622 KLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQM-------EKELQVENEELEEEV 694 (970)
T ss_pred HHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4455566555544332 223344555666677777777777777777766662 344566666654433
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhccc
Q 008742 385 AAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT 425 (555)
Q Consensus 385 AaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQk 425 (555)
.+....-..|..|+..+|+.+.-..+...+|-+.
T Consensus 695 -------q~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~ 728 (970)
T KOG0946|consen 695 -------QDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQG 728 (970)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcccccchhhHHhH
Confidence 3444445566666677777666555555555553
No 215
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=46.02 E-value=4.6e+02 Score=29.13 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhccCch----hHH---HHHHHHHH---HHHHHHHHHhhhhccccCCCCcc
Q 008742 466 LEGNIEMTRKEIEDPT----EVE---IELKRRLG---QLTDHLIQKQAQVFPLNFLPGRT 515 (555)
Q Consensus 466 LEeEI~~TKktl~~~T----ssE---~ELE~RLh---QLTD~LIQKQTqLEALSTEKnSL 515 (555)
+..+|....+.|.... ..+ .+...|+. .-|+-|+.--+++|-+=-.+|..
T Consensus 453 ~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRf 512 (569)
T PRK04778 453 VSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRY 512 (569)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666666654422 333 34445544 44667888888888666666655
No 216
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=45.65 E-value=3.1e+02 Score=31.69 Aligned_cols=127 Identities=15% Similarity=0.218 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008742 379 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQ 458 (555)
Q Consensus 379 eLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~q 458 (555)
.|..-+...+-.+..-...+.-+..++...+.+.+....++.|++.+..-+.. -...++.+..++++-.+.+.+++.+
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~A--y~q~c~~~~~~l~e~~~rl~~~~~~ 160 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEA--YSQQCEEQRRILREYTKRLQGQVEQ 160 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555555556666666666666777776665432221 1245677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh------ccCchhHHHHHHHHHHHHHHHHHHH-hhhhcc
Q 008742 459 LEDKAKKLEGNIEMTRKE------IEDPTEVEIELKRRLGQLTDHLIQK-QAQVFP 507 (555)
Q Consensus 459 Lq~ea~KLEeEI~~TKkt------l~~~TssE~ELE~RLhQLTD~LIQK-QTqLEA 507 (555)
+++=.+|-..++...-.+ ..++.-.|+.-++=++...+.+.+= |+.+++
T Consensus 161 ~q~~~R~a~~~v~~~~~~sa~~~~~~~~~~lE~~v~rdVR~aC~~~~~flq~l~~~ 216 (632)
T PF14817_consen 161 LQDIQRKAKVEVEFGPSTSASSGSSDSSLGLEPAVLRDVREACELRAQFLQSLLES 216 (632)
T ss_pred HHHHHhhccCceeecCCccchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999988876666554443 1122345777777777766654331 444443
No 217
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=45.08 E-value=5.2e+02 Score=29.51 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=5.7
Q ss_pred CCccchHHHh
Q 008742 48 GSVSLKDQLK 57 (555)
Q Consensus 48 ~~v~lkdqlk 57 (555)
..+.|.+-|+
T Consensus 16 ~~idl~~l~~ 25 (726)
T PRK09841 16 NEIDLLRLVG 25 (726)
T ss_pred CCcCHHHHHH
Confidence 4566666554
No 218
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=44.79 E-value=5.9e+02 Score=30.06 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHH
Q 008742 365 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREI 444 (555)
Q Consensus 365 EalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~ 444 (555)
.+=+++..|-...+.+..-++.-+-.++.-++.+.++-+.++-++..++.+..++.++...-. +.-.++....+=+-.
T Consensus 528 ~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~--e~~~ele~~~~k~~r 605 (698)
T KOG0978|consen 528 KLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYA--ELELELEIEKFKRKR 605 (698)
T ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 333455555666677777777777777778888888777777777777777766666553210 001133334444445
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhccCc
Q 008742 445 LEAEYTFIADKIIQLEDK------AKKLEGNIEMTRKEIEDP 480 (555)
Q Consensus 445 ~reE~q~l~~kI~qLq~e------a~KLEeEI~~TKktl~~~ 480 (555)
+.+|+..|..++..++.. -..|.+|+...|..++=|
T Consensus 606 leEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs 647 (698)
T KOG0978|consen 606 LEEELERLKRKLERLKKEESGASADEVLAEELKEYKELLKCS 647 (698)
T ss_pred HHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhceeCC
Confidence 556666666666554443 223677777777665433
No 219
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=44.76 E-value=3.5e+02 Score=28.87 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=17.4
Q ss_pred HhHhhHHHHHHHHHH-HHHHHHHHH
Q 008742 358 RHNNTRMEALQLLAK-LETANADLA 381 (555)
Q Consensus 358 ~h~~TQmEalaRLaK-LE~e~qeLA 381 (555)
.|+..+-++|.+--| ||.+|..|=
T Consensus 156 ~~~~~~le~Lq~Klk~LEeEN~~LR 180 (306)
T PF04849_consen 156 SQKCIQLEALQEKLKSLEEENEQLR 180 (306)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Confidence 455677788876555 999998773
No 220
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=44.66 E-value=86 Score=32.12 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=36.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch
Q 008742 437 GVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT 481 (555)
Q Consensus 437 ~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~T 481 (555)
+.+.--..++..|+.+.+.|..|+.+++..++.+..+.+...+++
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~ 221 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSS 221 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 455555667899999999999999999999999999887765554
No 221
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=44.14 E-value=7.1e+02 Score=30.78 Aligned_cols=14 Identities=7% Similarity=-0.012 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 008742 484 EIELKRRLGQLTDH 497 (555)
Q Consensus 484 E~ELE~RLhQLTD~ 497 (555)
+..-++.|.++|.+
T Consensus 288 ~~~~~~~l~~~~q~ 301 (1109)
T PRK10929 288 QRQAASQTLQVRQA 301 (1109)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555555555
No 222
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=43.99 E-value=3.3e+02 Score=26.85 Aligned_cols=63 Identities=21% Similarity=0.252 Sum_probs=39.6
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhh
Q 008742 355 EKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 417 (555)
Q Consensus 355 Eqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQ 417 (555)
.......-+.+..++...|+.+...|-.-....++.++.....+++|+++++..+.....+.-
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455556666666666666666667777777777788887777776655554443
No 223
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=43.97 E-value=3.6e+02 Score=27.31 Aligned_cols=88 Identities=23% Similarity=0.250 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhh-hhhhhh
Q 008742 361 NTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLA-ASKGVE 439 (555)
Q Consensus 361 ~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~-eL~~~r 439 (555)
-+..+++.-+..++.+..-|.+.-.-.+-=++|...++.+|+| +..= ++.++ .+...+
T Consensus 15 k~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrq-I~~D--------------------In~lE~iIkqa~ 73 (230)
T PF10146_consen 15 KLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQ-INQD--------------------INTLENIIKQAE 73 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--------------------HHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555532 1111 11121 244566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 440 FEREILEAEYTFIADKIIQLEDKAKKLEGN 469 (555)
Q Consensus 440 ~ErE~~reE~q~l~~kI~qLq~ea~KLEeE 469 (555)
.|++..++.++.+.+.+.-|++++-.++.+
T Consensus 74 ~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 74 SERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777777777
No 224
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=43.66 E-value=3.4e+02 Score=26.90 Aligned_cols=115 Identities=24% Similarity=0.265 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH--------HH
Q 008742 308 ERENMVARLEGEKQSLEKILEERAKQ---QVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLE--------TA 376 (555)
Q Consensus 308 eRenmVa~LE~EKesLeKiL~er~kQ---qaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE--------~e 376 (555)
-.+..+..++.+...|+...+.-.++ -..-+..+......|.+.++-=...-+.+++.+-+=+.++. ..
T Consensus 42 ~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~ 121 (264)
T PF06008_consen 42 PQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLP 121 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 34556677777777776665554443 33346777777777777644333334444444433333332 25
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcc
Q 008742 377 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 377 ~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQ 424 (555)
..+|.++|+-|++-+.+=..| .+..+-..++..+..+..=|..++.
T Consensus 122 ~~~l~~~l~ea~~mL~emr~r--~f~~~~~~Ae~El~~A~~LL~~v~~ 167 (264)
T PF06008_consen 122 SEDLQRALAEAQRMLEEMRKR--DFTPQRQNAEDELKEAEDLLSRVQK 167 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999887777 4877777777777665554444443
No 225
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=43.65 E-value=5e+02 Score=28.84 Aligned_cols=83 Identities=17% Similarity=0.134 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhHHHhHHHHhhhhhhhcccch---hhhhhh----hhhhhhhHHHHHHHHHHHH-------HHHHHHHHH
Q 008742 396 NQVAELRQQTELKEVAHEELSQRNSNTHQTGI---YLKRLA----ASKGVEFEREILEAEYTFI-------ADKIIQLED 461 (555)
Q Consensus 396 ~rvaELqQQVkl~e~~~EslKQeL~d~kQkas---~l~ql~----eL~~~r~ErE~~reE~q~l-------~~kI~qLq~ 461 (555)
+++.-.+.+|+.++.-+...++.|..|+.+.- |..+.. -+-.++-|.-.++.++..+ ..+|.+|+.
T Consensus 242 D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~ 321 (434)
T PRK15178 242 ERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSA 321 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH
Confidence 45566667777777777788888888876532 222211 1122333333333333333 346666777
Q ss_pred HHHHHHHHHHHHhhhcc
Q 008742 462 KAKKLEGNIEMTRKEIE 478 (555)
Q Consensus 462 ea~KLEeEI~~TKktl~ 478 (555)
+..-|+..|...|..++
T Consensus 322 rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 322 KIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77777777777666665
No 226
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=43.49 E-value=6.5e+02 Score=30.18 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 008742 489 RRLGQLTDHLIQKQAQVF 506 (555)
Q Consensus 489 ~RLhQLTD~LIQKQTqLE 506 (555)
..+.+|.+.+.+-...++
T Consensus 380 ~~l~~l~~~~~~~~~~l~ 397 (1047)
T PRK10246 380 EQLRQWQQQLTHAEQKLN 397 (1047)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445554444443333
No 227
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=42.89 E-value=7.9e+02 Score=30.97 Aligned_cols=201 Identities=23% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHhhhh-HHHH-------------------HHHHHHHHHH--------hhHHHHHHHHHHHHHHHhHHHHHHH-HH
Q 008742 294 LAEKAAAKAG-DAIK-------------------ERENMVARLE--------GEKQSLEKILEERAKQQVKEASELQ-TS 344 (555)
Q Consensus 294 laE~~aAKaa-aaIk-------------------eRenmVa~LE--------~EKesLeKiL~er~kQqaqEassLQ-~~ 344 (555)
+-|+.+||+- .+|| ++.++-..|+ .|.-.+.+.|-+.-..-.|++.+|| .-
T Consensus 1007 s~EA~~AK~QMDaIKqmIekKv~L~~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV 1086 (1439)
T PF12252_consen 1007 SEEARQAKAQMDAIKQMIEKKVVLQALTQCQDALEKQNIAGALQALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAV 1086 (1439)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHH-----------
Q 008742 345 MMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE----------- 413 (555)
Q Consensus 345 m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~E----------- 413 (555)
-.=++...+..+.+|...=-..-.|...||.....-..++.-+=-++.- |||.|++++..--
T Consensus 1087 ~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnn-------lqqElklLRnEK~Rmh~~~dkVDF 1159 (1439)
T PF12252_consen 1087 VTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNN-------LQQELKLLRNEKIRMHSGTDKVDF 1159 (1439)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH-------HHHHHHHHHhHHHhhccCCCcccH
Q ss_pred ----HHhhhhhhhcccch-------------------------------hhhhhhhhhhhhhHH----------------
Q 008742 414 ----ELSQRNSNTHQTGI-------------------------------YLKRLAASKGVEFER---------------- 442 (555)
Q Consensus 414 ----slKQeL~d~kQkas-------------------------------~l~ql~eL~~~r~Er---------------- 442 (555)
.|-+.|+.++.+.. ..+++.+++-++.||
T Consensus 1160 SDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~LrnErIKkHGaSkePLDlSDl 1239 (1439)
T PF12252_consen 1160 SDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEFLRNERIKKHGASKEPLDLSDL 1239 (1439)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCccchhhH
Q ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH---HhhhccCchhHHHHHHHHHHHHHHHHHHHh
Q 008742 443 EILEAEYTFIADKIIQ-----------------LEDKAKKLEGNIEM---TRKEIEDPTEVEIELKRRLGQLTDHLIQKQ 502 (555)
Q Consensus 443 E~~reE~q~l~~kI~q-----------------Lq~ea~KLEeEI~~---TKktl~~~TssE~ELE~RLhQLTD~LIQKQ 502 (555)
+.++..+|.++.-+.. ++.+...++..+.. .-++| +.|..=..++.-+-.|.|.||-||
T Consensus 1240 DkLk~~LQ~iNQ~LV~~LIn~iR~slnqme~~tf~~q~~eiq~n~~ll~~L~~tl-D~S~~a~Kqk~di~kl~~~lv~kQ 1318 (1439)
T PF12252_consen 1240 DKLKGQLQKINQNLVKALINTIRVSLNQMEVKTFEEQEKEIQQNLQLLDKLEKTL-DDSDTAQKQKEDIVKLNDFLVEKQ 1318 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHh
No 228
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=41.79 E-value=2.2e+02 Score=24.20 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=29.7
Q ss_pred HHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008742 399 AELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQ 458 (555)
Q Consensus 399 aELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~q 458 (555)
+.|+++|..+=-++.-|+.++..++.+...+. .+-..++.|-+.+++++.....+|..
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~--~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELK--EENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666665544333 22333444444444554444444443
No 229
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=41.16 E-value=6.4e+02 Score=29.39 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=55.4
Q ss_pred HHHHHhhHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 313 VARLEGEKQSLEKILEERAK---QQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQ 388 (555)
Q Consensus 313 Va~LE~EKesLeKiL~er~k---QqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQ 388 (555)
-+.++.+.++|.+.|++.-. ++.+....|+.+|++-.+.+-..+.-|-..|.|.-.++...+..-++..+.+++-.
T Consensus 416 ~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~ 494 (607)
T KOG0240|consen 416 EDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALE 494 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777776655443 67777888888888888888888888888888887777766666667666666543
No 230
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=40.81 E-value=1.7e+02 Score=22.68 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=42.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 008742 434 ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVF 506 (555)
Q Consensus 434 eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLE 506 (555)
.++........+.+++.....+|..+...+..|...-+-....+. ..=.+|..|+..|...+-..+..||
T Consensus 35 ~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~---~~~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 35 ELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQ---EKLEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 333333455566677777777777777777776333222111110 1126788899998888888777665
No 231
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=40.52 E-value=3.6e+02 Score=26.30 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=13.3
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhHHHHHHHHH
Q 008742 376 ANADLARALA---AAQKKLEMETNQVAELRQQT 405 (555)
Q Consensus 376 e~qeLAeSLA---aAQRkleeEk~rvaELqQQV 405 (555)
-.+.||.+++ ..++++++-..++.+++.+.
T Consensus 43 ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 43 VRTTSARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 33444444444444444443
No 232
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.18 E-value=3.7e+02 Score=26.42 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=16.0
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHHHHHHH
Q 008742 470 IEMTRKEIEDPTEVEIELKRRLGQLTDHLIQ 500 (555)
Q Consensus 470 I~~TKktl~~~TssE~ELE~RLhQLTD~LIQ 500 (555)
|..+|.-|..+.......=-.+.+..+.+-+
T Consensus 199 i~~~k~~l~~y~~~~~~~~~~~~~~~e~~~~ 229 (261)
T cd07648 199 LRQMKEFLASYAEVLSENHSAVGQVHEEFKR 229 (261)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 4555555555554444444455555555443
No 233
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=39.98 E-value=3.6e+02 Score=30.51 Aligned_cols=10 Identities=30% Similarity=0.331 Sum_probs=5.9
Q ss_pred hccCCCCCCc
Q 008742 106 LLGTPDKGLS 115 (555)
Q Consensus 106 ll~tp~~~~~ 115 (555)
+|.-|+.-++
T Consensus 79 ilaVP~~mt~ 88 (493)
T KOG0804|consen 79 ILAVPAYMTS 88 (493)
T ss_pred EEeccccccH
Confidence 5566666554
No 234
>PRK01156 chromosome segregation protein; Provisional
Probab=39.91 E-value=6.4e+02 Score=29.05 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 008742 487 LKRRLGQLTDHLIQ 500 (555)
Q Consensus 487 LE~RLhQLTD~LIQ 500 (555)
|+.++..++..+..
T Consensus 714 l~eel~~~~~~~~~ 727 (895)
T PRK01156 714 LSDRINDINETLES 727 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555554443
No 235
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.90 E-value=3.1e+02 Score=25.35 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=38.7
Q ss_pred HHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Q 008742 399 AELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDK---AKKLEGNIEMTRK 475 (555)
Q Consensus 399 aELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~e---a~KLEeEI~~TKk 475 (555)
.-|+.++..++..+..++.++. .+..+|+.+++|+-.++.....++.. ..+|+.++.....
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~----------------~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ 82 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELA----------------RLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554433 34444555555555555555444332 2223333333222
Q ss_pred h-------ccCchhHHHHHHHHHHHHHH
Q 008742 476 E-------IEDPTEVEIELKRRLGQLTD 496 (555)
Q Consensus 476 t-------l~~~TssE~ELE~RLhQLTD 496 (555)
. +-.+++-=-||+..+..|-+
T Consensus 83 ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 83 RYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 2 34444433566666665544
No 236
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=39.43 E-value=4.3e+02 Score=32.27 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 008742 370 LAKLETA 376 (555)
Q Consensus 370 LaKLE~e 376 (555)
+.++|.+
T Consensus 512 ~~r~e~e 518 (1021)
T PTZ00266 512 VDRLERD 518 (1021)
T ss_pred HHHHHHH
Confidence 3333333
No 237
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=39.36 E-value=4.2e+02 Score=26.74 Aligned_cols=14 Identities=21% Similarity=0.257 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 008742 338 ASELQTSMMETMDA 351 (555)
Q Consensus 338 assLQ~~m~ET~Qa 351 (555)
...+++++...+++
T Consensus 68 ~~k~e~~A~~Al~~ 81 (225)
T COG1842 68 AEKLEEKAELALQA 81 (225)
T ss_pred HHHHHHHHHHHHHC
Confidence 34445555444443
No 238
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=39.13 E-value=1.5e+02 Score=26.20 Aligned_cols=62 Identities=31% Similarity=0.270 Sum_probs=43.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCc
Q 008742 435 SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGR 514 (555)
Q Consensus 435 L~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALSTEKnS 514 (555)
|+.++-|.+..+.++....-++.+|+.+.++++-. | =.+-|-.||.+=++||+.-.|--.
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~----------------e----RK~RtHRLi~rGa~lEsi~~e~~~ 62 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKK----------------E----RKERTHRLIERGAILESIFPEPKD 62 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------H----HHHHHHHHHHhhHHHHHHhhcchh
Confidence 45566677777777777777777777776666541 1 123467899999999999888666
Q ss_pred cc
Q 008742 515 TT 516 (555)
Q Consensus 515 Lv 516 (555)
|+
T Consensus 63 lT 64 (86)
T PF12958_consen 63 LT 64 (86)
T ss_pred cC
Confidence 54
No 239
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=38.83 E-value=7e+02 Score=29.19 Aligned_cols=21 Identities=43% Similarity=0.537 Sum_probs=11.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q 008742 313 VARLEGEKQSLEKILEERAKQQ 334 (555)
Q Consensus 313 Va~LE~EKesLeKiL~er~kQq 334 (555)
+..++++...+.+ +.+...++
T Consensus 205 ~~~~~~e~~~~~~-l~e~~~~~ 225 (908)
T COG0419 205 LEALEEELKELKK-LEEIQEEQ 225 (908)
T ss_pred HHHHHHHHHHHHh-HHHHHHHH
Confidence 5566666666655 55544444
No 240
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=38.49 E-value=1.9e+02 Score=29.92 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=10.8
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 008742 435 SKGVEFEREILEAEYTFIAD 454 (555)
Q Consensus 435 L~~~r~ErE~~reE~q~l~~ 454 (555)
-..|....+.++..+..+.|
T Consensus 293 ~~RW~~~~~~l~~~~~~l~G 312 (344)
T PF12777_consen 293 KERWSEQIEELEEQLKNLVG 312 (344)
T ss_dssp HHCCHCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcccHH
Confidence 34565555555555555544
No 241
>PRK01203 prefoldin subunit alpha; Provisional
Probab=38.38 E-value=2.2e+02 Score=26.81 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=51.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------------------------------ccCc
Q 008742 437 GVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE------------------------------------IEDP 480 (555)
Q Consensus 437 ~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt------------------------------------l~~~ 480 (555)
++..|-..+++++..+..+|.+|+.-..++.+-++..+.. ...+
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK 83 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAE 83 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEe
Confidence 4555677778888888888888888877777666665441 1111
Q ss_pred hhHH--HHHHHHHHHHHHHHHHHhhhhcccc
Q 008742 481 TEVE--IELKRRLGQLTDHLIQKQAQVFPLN 509 (555)
Q Consensus 481 TssE--~ELE~RLhQLTD~LIQKQTqLEALS 509 (555)
|.-+ --|+.++.+|...+-.|+.+++++.
T Consensus 84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~ 114 (130)
T PRK01203 84 ERERTIERLKENLEDLKDSIQKLNDQRKTLV 114 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2112 4688899999999999999988763
No 242
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.36 E-value=1.5e+02 Score=30.98 Aligned_cols=58 Identities=28% Similarity=0.344 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH
Q 008742 434 ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHL 498 (555)
Q Consensus 434 eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~L 498 (555)
+...++.|.+-+...+..++.++..++.+..+++.+|......+ .+|++|+.+..+.|
T Consensus 46 ~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI-------~~~~~~I~~r~~~l 103 (265)
T COG3883 46 EKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEI-------AELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
No 243
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=38.31 E-value=2.2e+02 Score=32.06 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 008742 346 METMDAFELEKQRHNNTRMEALQLLAKLE 374 (555)
Q Consensus 346 ~ET~QalerEqe~h~~TQmEalaRLaKLE 374 (555)
++|.++++.=+..|+.+++...+|...|.
T Consensus 160 L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp 188 (555)
T TIGR03545 160 LKTVETAEEIEKSLKAMQQKWKKRKKDLP 188 (555)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56667776667777777777777777665
No 244
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=38.02 E-value=8e+02 Score=29.61 Aligned_cols=62 Identities=10% Similarity=0.133 Sum_probs=37.9
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 389 KKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKK 465 (555)
Q Consensus 389 RkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~K 465 (555)
.-|..-..++++|+.|.....++.++++.-|+. +-+.+-+-+|++.+.+-.++..|+...++
T Consensus 537 ~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk---------------~nrlkQdear~~~~~lvqqv~dLR~~L~~ 598 (961)
T KOG4673|consen 537 DYYSNSRALAAALEAQALAEQATNDEARSDLQK---------------ENRLKQDEARERESMLVQQVEDLRQTLSK 598 (961)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHH---------------HhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444467888888888888888877763321 12223444566666666666666666554
No 245
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=37.63 E-value=8.7e+02 Score=29.91 Aligned_cols=106 Identities=17% Similarity=0.135 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHhHHHhHHHHhhhhhhhcccchh-hhh---hhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 008742 396 NQVAELRQQTELKEVAHEELSQRNSNTHQTGIY-LKR---LAA-SKGVEFEREILEAEYTFIADKIIQLEDKAKK---LE 467 (555)
Q Consensus 396 ~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~-l~q---l~e-L~~~r~ErE~~reE~q~l~~kI~qLq~ea~K---LE 467 (555)
++.+++|+-+.-++..++.+--++.+++.+-.- +-. +.+ ++-++.|...+.+++..+..||.-|+...-. +.
T Consensus 330 rqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~ 409 (1265)
T KOG0976|consen 330 RQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGK 409 (1265)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 455566665555555555555555555443221 111 111 1223334444445555555555555444222 34
Q ss_pred HHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008742 468 GNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPL 508 (555)
Q Consensus 468 eEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEAL 508 (555)
.+.+.+|+.| .|-.-||++|--||+----|++..
T Consensus 410 ~dhe~~kneL-------~~a~ekld~mgthl~mad~Q~s~f 443 (1265)
T KOG0976|consen 410 KDHEAAKNEL-------QEALEKLDLMGTHLSMADYQLSNF 443 (1265)
T ss_pred chhHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHhhH
Confidence 4455555554 344557777777776554444443
No 246
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=37.58 E-value=42 Score=28.21 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008742 437 GVEFEREILEAEYTFIADKIIQLEDK 462 (555)
Q Consensus 437 ~~r~ErE~~reE~q~l~~kI~qLq~e 462 (555)
+++.|.|.+++.|..|.+++.+|+.+
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~E 36 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEE 36 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888877777665
No 247
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=36.65 E-value=1.8e+02 Score=30.99 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 444 ILEAEYTFIADKIIQLEDKAKKLEGNIEMT 473 (555)
Q Consensus 444 ~~reE~q~l~~kI~qLq~ea~KLEeEI~~T 473 (555)
.+.+.+..+..++.+|+.+...|+++++..
T Consensus 379 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 379 KLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555555555555555555555554
No 248
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=36.59 E-value=5.7e+02 Score=27.46 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 008742 347 ETMDAFELEKQRHNNTRMEALQLLAKL 373 (555)
Q Consensus 347 ET~QalerEqe~h~~TQmEalaRLaKL 373 (555)
.-++-|+.+..+-++-+.++..|++-|
T Consensus 108 d~i~nLk~se~~lkqQ~~~a~RrE~il 134 (330)
T KOG2991|consen 108 DDITNLKESEEKLKQQQQEAARRENIL 134 (330)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 556678888888888888887776543
No 249
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=36.58 E-value=3.8e+02 Score=25.48 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=12.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008742 435 SKGVEFEREILEAEYTFIADKIIQLE 460 (555)
Q Consensus 435 L~~~r~ErE~~reE~q~l~~kI~qLq 460 (555)
|..++-|++.+..+.+....+|..|.
T Consensus 75 L~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 75 LDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 250
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=36.56 E-value=8.3e+02 Score=29.39 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=10.2
Q ss_pred hHhhHHHHHHHHHHHHHHHH
Q 008742 359 HNNTRMEALQLLAKLETANA 378 (555)
Q Consensus 359 h~~TQmEalaRLaKLE~e~q 378 (555)
-+.-+--..+|-++||+.--
T Consensus 606 araeraa~~~ra~eleArek 625 (828)
T PF04094_consen 606 ARAERAAMAARASELEAREK 625 (828)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33334444556666666544
No 251
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.53 E-value=6.4e+02 Score=28.08 Aligned_cols=180 Identities=17% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhh
Q 008742 342 QTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (555)
Q Consensus 342 Q~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d 421 (555)
.+++-.-+.+++.+...-...+..+-.=+..+|.+...+-..|...+..+..=.++++++...+..++.....-++.|..
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~ 119 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAE 119 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----hcccchh-------hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHH
Q 008742 422 -----THQTGIY-------LKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKR 489 (555)
Q Consensus 422 -----~kQkas~-------l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~ 489 (555)
|..+..| .+.......+--=-.-+-.+.....+.+.+-.......+..|+.-+.++ +..+.|...
T Consensus 120 ~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l---~~~~~eq~~ 196 (420)
T COG4942 120 QLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAEL---TTLLSEQRA 196 (420)
T ss_pred HHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCccchhHHHHHHHHh
Q 008742 490 RLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRMLSLAF 527 (555)
Q Consensus 490 RLhQLTD~LIQKQTqLEALSTEKnSLv~QLERLE~~~~ 527 (555)
+..-|.-.++-+|--+..|.++...- --+|+.++.
T Consensus 197 q~~kl~~~~~E~kk~~~~l~~~l~~~---q~~l~eL~~ 231 (420)
T COG4942 197 QQAKLAQLLEERKKTLAQLNSELSAD---QKKLEELRA 231 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
No 252
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=36.52 E-value=9.2e+02 Score=29.92 Aligned_cols=105 Identities=21% Similarity=0.190 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHH--HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 008742 307 KERENMVARLEGEKQSLEKILEERAKQQV-KEASELQTSMMETMD--AFELEKQRHNNTRMEALQLLAKLETANADLARA 383 (555)
Q Consensus 307 keRenmVa~LE~EKesLeKiL~er~kQqa-qEassLQ~~m~ET~Q--alerEqe~h~~TQmEalaRLaKLE~e~qeLAeS 383 (555)
....+-+..|+.+.+.|+|+.+-.-+... ..-=+|-...+.-+. ...+|...|+...--+..=+.+|+-+.+.++.-
T Consensus 198 ~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~ 277 (1072)
T KOG0979|consen 198 TTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDK 277 (1072)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 34556677888888888888876555332 222222221111111 244555555444444444444444433333221
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhh
Q 008742 384 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (555)
Q Consensus 384 LAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQe 418 (555)
-.+=..+++++..+.+.+...|....++
T Consensus 278 -------~eeLe~~~~et~~~~s~~~~~~~e~~~k 305 (1072)
T KOG0979|consen 278 -------KEELESEKKETRSKISQKQRELNEALAK 305 (1072)
T ss_pred -------hhhHHhHHHhHHHHHHHHHHHHHHHHHH
Confidence 1111124555555555555544444433
No 253
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.46 E-value=6.4e+02 Score=28.05 Aligned_cols=19 Identities=42% Similarity=0.621 Sum_probs=8.3
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q 008742 312 MVARLEGEKQSLEKILEER 330 (555)
Q Consensus 312 mVa~LE~EKesLeKiL~er 330 (555)
++.+|+.+...|+.++++-
T Consensus 199 ~l~~l~~~~~~l~~~~~~i 217 (569)
T PRK04778 199 ILDQLEEELAALEQIMEEI 217 (569)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 254
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=36.17 E-value=5.1e+02 Score=26.83 Aligned_cols=116 Identities=18% Similarity=0.158 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhh-------hhhhHHHHHH
Q 008742 374 ETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASK-------GVEFEREILE 446 (555)
Q Consensus 374 E~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~-------~~r~ErE~~r 446 (555)
....+.|.+++..-++.+.+=.....++ -..+.+.+.++|.+....+.++++..++. +--++.-..-
T Consensus 161 q~~~~~l~~a~~~~~~a~~ey~~~l~~~------~~~a~~~~~~~l~~~~~~g~~~~s~re~~d~Wi~~ae~~~~~~~~S 234 (293)
T PF09712_consen 161 QEQLQALFDAWMEYQRASQEYQAQLSEA------WMKAFERMMEKLQERAEEGEQIKSWREFYDIWIDAAEEAYEELFRS 234 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHHCC
Confidence 3344445555544444444332222222 23455666667766555544333332211 1123444556
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhccCchhHH-HHHHHHHHHHH
Q 008742 447 AEYTFIADKIIQLEDKAKK-LEGNIEMTRKEIEDPTEVE-IELKRRLGQLT 495 (555)
Q Consensus 447 eE~q~l~~kI~qLq~ea~K-LEeEI~~TKktl~~~TssE-~ELE~RLhQLT 495 (555)
+++.+..+++..-....++ +.+-++.+=+.|--||++| .||=+|||+|=
T Consensus 235 ~ef~~~~g~~~~a~m~~r~~~~~~~e~~L~~l~lPTr~evd~l~k~l~eLr 285 (293)
T PF09712_consen 235 EEFAQAYGQLVNALMDLRKQQQEVVEEYLRSLNLPTRSEVDELYKRLHELR 285 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 8888888888665555444 5666677777788899888 66777776664
No 255
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=35.79 E-value=1.4e+02 Score=28.18 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--c-----cCch-hHHHHHHHHHHHHHHHHHH
Q 008742 446 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKE--I-----EDPT-EVEIELKRRLGQLTDHLIQ 500 (555)
Q Consensus 446 reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt--l-----~~~T-ssE~ELE~RLhQLTD~LIQ 500 (555)
.+.|.+|...+..|+.+...+-..|..++-. + ++.. .-+..|++|+++|...|=.
T Consensus 10 ~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~ 72 (158)
T PRK05892 10 PAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRT 72 (158)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666665444443444332222 2 1122 3368999999999988853
No 256
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=35.61 E-value=5.7e+02 Score=27.78 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008742 447 AEYTFIADKIIQLEDKAKKLEGN 469 (555)
Q Consensus 447 eE~q~l~~kI~qLq~ea~KLEeE 469 (555)
..++.+..+|..++.+..+++.+
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 257
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.49 E-value=3e+02 Score=27.05 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=34.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008742 435 SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 476 (555)
Q Consensus 435 L~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt 476 (555)
...++.|.+.++.++..|..++..|+.+..+|+.++.+...+
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888889999999999999999988887777766655
No 258
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=35.44 E-value=99 Score=34.58 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccccCC
Q 008742 462 KAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFL 511 (555)
Q Consensus 462 ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALSTE 511 (555)
++..||..|+.+|.++..-+....+++.+|..|-+.+=+-+.|+||+...
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 33444444444444443233334567777778888777777788776554
No 259
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=35.32 E-value=8.5e+02 Score=29.15 Aligned_cols=183 Identities=20% Similarity=0.196 Sum_probs=98.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH-
Q 008742 310 ENMVARLEGEKQSLEKILEERAKQQVK-------EASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLA- 381 (555)
Q Consensus 310 enmVa~LE~EKesLeKiL~er~kQqaq-------EassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLA- 381 (555)
+-+.+.|++--+.|-.+|..+++.-|. ...+=|+. ...+..++.|-+.++-=--|......+|..++-.+|
T Consensus 428 eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~y-skQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQ 506 (786)
T PF05483_consen 428 EKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHY-SKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQ 506 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666653221 11111221 122233555555554444466677777777766554
Q ss_pred ------HHHHHHHHHHHHHHhHHHHHHHHHH-------hHHHhHHHHhhhhhhhcc----c--chh--------------
Q 008742 382 ------RALAAAQKKLEMETNQVAELRQQTE-------LKEVAHEELSQRNSNTHQ----T--GIY-------------- 428 (555)
Q Consensus 382 ------eSLAaAQRkleeEk~rvaELqQQVk-------l~e~~~EslKQeL~d~kQ----k--as~-------------- 428 (555)
--|...|-....-+++..-+-.|++ .+...+++++.++..-.. + .+.
T Consensus 507 E~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~ 586 (786)
T PF05483_consen 507 ETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKE 586 (786)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhH
Confidence 2344444444444444443333333 334455555555443111 0 110
Q ss_pred ---------hh----hhh----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hccCc
Q 008742 429 ---------LK----RLA----ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK-----------EIEDP 480 (555)
Q Consensus 429 ---------l~----ql~----eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKk-----------tl~~~ 480 (555)
++ ++. .+++++.|-.+++-.+..-..|+..|..++.+|+.|++.+++ +++.+
T Consensus 587 kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K 666 (786)
T PF05483_consen 587 KQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESK 666 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 00 110 245677788888877777777777788777777777766554 46777
Q ss_pred hhHHHHHHHHHHH
Q 008742 481 TEVEIELKRRLGQ 493 (555)
Q Consensus 481 TssE~ELE~RLhQ 493 (555)
+.++.+|-+-++-
T Consensus 667 ~~~e~~L~~EveK 679 (786)
T PF05483_consen 667 SISEEELLGEVEK 679 (786)
T ss_pred hhhHHHHHHHHHH
Confidence 7777777665544
No 260
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=35.16 E-value=5.4e+02 Score=27.10 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=6.1
Q ss_pred ccccCCccc
Q 008742 68 GKLQSDPNV 76 (555)
Q Consensus 68 gkl~sd~~~ 76 (555)
|-+-.||-|
T Consensus 4 ~NiM~D~RV 12 (291)
T PF06098_consen 4 GNIMYDRRV 12 (291)
T ss_pred ccccCCCCc
Confidence 556677775
No 261
>PRK11519 tyrosine kinase; Provisional
Probab=35.12 E-value=7.3e+02 Score=28.34 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=8.3
Q ss_pred CCCCCCCccchHHHh
Q 008742 43 PSKSSGSVSLKDQLK 57 (555)
Q Consensus 43 ~~ksg~~v~lkdqlk 57 (555)
|......+.|++.+.
T Consensus 11 ~~~~~~~idl~~l~~ 25 (719)
T PRK11519 11 PVTGSDEIDIGRLVG 25 (719)
T ss_pred CCCCcCCcCHHHHHH
Confidence 434444567777654
No 262
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=34.99 E-value=7.4e+02 Score=28.37 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=21.3
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHcc
Q 008742 3 HWISNKLKVAETFLQQIDQQAAESLG 28 (555)
Q Consensus 3 ~w~s~klk~~~~~~~q~dqq~~~sl~ 28 (555)
.|++.---.||.+|.-.|+-|+..+.
T Consensus 2 Sw~~d~aG~aE~llN~~d~ka~ta~~ 27 (554)
T KOG4677|consen 2 SWMNDTAGDAEELLNSSDFKAFTADD 27 (554)
T ss_pred chhhhccchHHHHHHhhhcccccccc
Confidence 48887778899999999998877654
No 263
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=34.66 E-value=6.4e+02 Score=27.52 Aligned_cols=16 Identities=38% Similarity=0.329 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 008742 485 IELKRRLGQLTDHLIQ 500 (555)
Q Consensus 485 ~ELE~RLhQLTD~LIQ 500 (555)
-=|.-||.-|.|.|=+
T Consensus 146 eK~klRLK~LEe~Lk~ 161 (351)
T PF07058_consen 146 EKLKLRLKVLEEGLKG 161 (351)
T ss_pred HHHHHHHHHHHhhccC
Confidence 3466777778777754
No 264
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=34.43 E-value=1.3e+02 Score=30.49 Aligned_cols=12 Identities=50% Similarity=0.504 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhh
Q 008742 290 KEKILAEKAAAK 301 (555)
Q Consensus 290 re~~laE~~aAK 301 (555)
=++|-.||...+
T Consensus 155 LekIKkER~ee~ 166 (244)
T PF04889_consen 155 LEKIKKERAEEK 166 (244)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 265
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=33.92 E-value=7.1e+02 Score=30.10 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=69.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhh-hhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 387 AQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKR-LAA-SKGVEFEREILEAEYTFIADKIIQLEDKAK 464 (555)
Q Consensus 387 AQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~q-l~e-L~~~r~ErE~~reE~q~l~~kI~qLq~ea~ 464 (555)
-|.++.+-.+-.+.||++.+-+--.+|.+|.|..++....-.-++ +-+ =+-|..|-..++-|...+..++..++.+..
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe 518 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLE 518 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 355666666666666666666666667666665554322100000 101 123555666677777777788877777765
Q ss_pred HHHHHHHHHhhhccCchhH-HHHHHHHHHHHHHHHHHHhhhhcc
Q 008742 465 KLEGNIEMTRKEIEDPTEV-EIELKRRLGQLTDHLIQKQAQVFP 507 (555)
Q Consensus 465 KLEeEI~~TKktl~~~Tss-E~ELE~RLhQLTD~LIQKQTqLEA 507 (555)
--|-|-.....++ .+ ..|. +||+.||-+|=.-++.|=+
T Consensus 519 ~sekEN~iL~itl----rQrDaEi-~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 519 ASEKENQILGITL----RQRDAEI-ERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHhhhhHhhhHH----HHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 5555544444444 11 2343 5999999999988888754
No 266
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=33.88 E-value=1e+03 Score=29.64 Aligned_cols=37 Identities=8% Similarity=0.041 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhh
Q 008742 385 AAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (555)
Q Consensus 385 AaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d 421 (555)
..|++.+.....+++++++.+...+..+..+..++..
T Consensus 871 ~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~ 907 (1353)
T TIGR02680 871 RHAATRAAEQRARAARAESDAREAAEDAAEARAEAEE 907 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555444444444444333
No 267
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=33.71 E-value=3.4e+02 Score=31.50 Aligned_cols=64 Identities=16% Similarity=0.083 Sum_probs=33.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHhHHHhHHHHhhhhhhhc
Q 008742 359 HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQV-AELRQQTELKEVAHEELSQRNSNTH 423 (555)
Q Consensus 359 h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rv-aELqQQVkl~e~~~EslKQeL~d~k 423 (555)
-.++||-+++||+.=+..+ -.+.-.+-=.--+-++.-.| .+|..+.+.....+.++..+|.++-
T Consensus 421 ~Sq~rmr~~~~La~~~~~r-rk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~D 485 (645)
T KOG0681|consen 421 ASQLRMRALARLAYEQVVR-RKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFD 485 (645)
T ss_pred hhHhhhHHHHhhhHHHHHH-HhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhC
Confidence 3455666666655544433 11111111011122333444 6777777777778888888888754
No 268
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=33.54 E-value=4.5e+02 Score=25.45 Aligned_cols=101 Identities=23% Similarity=0.251 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHH
Q 008742 369 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAE 448 (555)
Q Consensus 369 RLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE 448 (555)
|..+|.....++-.+|..++.-+++.-.+|....+.+ ...--.|.+|-.+++||. ++.+-.++.=++.+...
T Consensus 16 ~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l-------~~~~~ri~~m~~gg~~f~-i~~~~~~~~~r~~l~~~ 87 (158)
T PF09486_consen 16 RERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRL-------RAHDARIDAMMTGGAPFS-IDEYLALRRYRDVLEER 87 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665555555554444444 444455556555555432 33333333335566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 449 YTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 449 ~q~l~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
.+.+..+..+|+..+...+.+|..|+..+
T Consensus 88 ~~~~e~~~a~l~~~l~~~~~~ia~~~raI 116 (158)
T PF09486_consen 88 VRAAEAELAALRQALRAAEDEIAATRRAI 116 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666555553
No 269
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=33.49 E-value=4.3e+02 Score=25.15 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=14.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 436 KGVEFEREILEAEYTFIADKIIQLEDKAKKLE 467 (555)
Q Consensus 436 ~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLE 467 (555)
..++.|...++.|.-.+...++..+.++.-|+
T Consensus 69 ~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 69 NQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 270
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=33.14 E-value=6.3e+02 Score=26.97 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008742 448 EYTFIADKIIQLEDKAKKLEGNIEMTR 474 (555)
Q Consensus 448 E~q~l~~kI~qLq~ea~KLEeEI~~TK 474 (555)
.+..+..+|.+++.+...++..+..++
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~ 263 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLT 263 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455566666666666666666655543
No 271
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=33.04 E-value=1e+03 Score=29.33 Aligned_cols=168 Identities=20% Similarity=0.212 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhHhhHHHH--------------HH
Q 008742 304 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDA-FELEKQRHNNTRMEA--------------LQ 368 (555)
Q Consensus 304 aaIkeRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~Qa-lerEqe~h~~TQmEa--------------la 368 (555)
..|-.=+-+.+-|+..-+-.+.+-++... +.+.|.++-+-+=| .+.=+.+||..=.+. -+
T Consensus 917 ~tls~LEpia~~LqsDPe~~e~L~~~y~q-----A~~~q~q~~qq~FAL~dv~qRr~HF~Y~ds~~~l~e~sdLnekLr~ 991 (1480)
T COG3096 917 NTLSKLEPIASVLQSDPEQFEQLKEDYAQ-----AQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLNEKLRQ 991 (1480)
T ss_pred chHHhhhhHHHHHhCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhcccchhhHHHHH
Confidence 44445666667777666655555444332 33333333332222 222233444332222 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccch-hhhh-----hhhhh----hh
Q 008742 369 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGI-YLKR-----LAASK----GV 438 (555)
Q Consensus 369 RLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas-~l~q-----l~eL~----~~ 438 (555)
||..+|+++--.-+-|...|-.+..=..=.+.|+.....+.-.+-+++|+++++.-.+- +... -++|. .-
T Consensus 992 rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDELh~~Lst~ 1071 (1480)
T COG3096 992 RLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARIRRDELHAQLSTN 1071 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHHHHHHhcc
Confidence 77777777777777777777777777677778888888888888899999999886643 2111 11221 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008742 439 EFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 476 (555)
Q Consensus 439 r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt 476 (555)
+--|--++..+.++...+..|....+|+|.+-+-+|.-
T Consensus 1072 RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~ 1109 (1480)
T COG3096 1072 RSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQ 1109 (1480)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 12233334445666666677777778877777665544
No 272
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=33.04 E-value=7.8e+02 Score=28.03 Aligned_cols=62 Identities=23% Similarity=0.193 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHh
Q 008742 335 VKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVA 411 (555)
Q Consensus 335 aqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~ 411 (555)
..|--.||.|+-.|-+|| ++=-|.+.||..-| +|++.||.++..--...+.|-+|+..+|-.
T Consensus 409 ~~eNk~L~~QLrDTAEAV--------qAagEllvrl~eae-------ea~~~a~~r~~~~eqe~ek~~kqiekLK~k 470 (488)
T PF06548_consen 409 KDENKGLQIQLRDTAEAV--------QAAGELLVRLREAE-------EAASVAQERAMDAEQENEKAKKQIEKLKRK 470 (488)
T ss_pred HHHhHHHHHHHHhHHHHH--------HHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999887 45678888887654 567777777766555566666666655543
No 273
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=32.93 E-value=9.6e+02 Score=29.04 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=51.1
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhh
Q 008742 356 KQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (555)
Q Consensus 356 qe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d 421 (555)
.+-|..-+|.++++-+.|+.+-..+++-|.++++.-+-=..-...|+++++-++.....-.+++.|
T Consensus 204 lqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd 269 (916)
T KOG0249|consen 204 LQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELRD 269 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 356888899999999999999999999999888765555566778899988888544444444544
No 274
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=32.66 E-value=2.3e+02 Score=23.38 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 008742 369 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK 408 (555)
Q Consensus 369 RLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~ 408 (555)
|++=.|....+|...|+.-|+.++.-..++..|..+++..
T Consensus 12 ~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 12 KLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555555555555555555444444444433
No 275
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=32.28 E-value=58 Score=33.96 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCc
Q 008742 485 IELKRRLGQLTDHLIQKQAQVFPLNFLPGR 514 (555)
Q Consensus 485 ~ELE~RLhQLTD~LIQKQTqLEALSTEKnS 514 (555)
.||++||.+| ||+|-+|-+|++.
T Consensus 224 seLq~r~~~l-------~~~L~~L~~e~~r 246 (289)
T COG4985 224 SELQKRLAQL-------QTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHH-------HHHHHHHhhhhhh
Confidence 8999999887 5677788887664
No 276
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=32.18 E-value=1.4e+02 Score=24.87 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 443 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 443 E~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
+.+-.+++.|..||.||..+...++.++..++.+.
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888887777776653
No 277
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=32.17 E-value=5.5e+02 Score=25.96 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=52.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 314 ARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEM 393 (555)
Q Consensus 314 a~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRklee 393 (555)
.+|+++|.-+++.++..+.. +..||..+- .-..-+.++..|+...-.+.+.|..--.++|..|..
T Consensus 108 ~~LeAQka~~eR~ia~~~~r----a~~LqaDl~-----------~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~ 172 (192)
T PF11180_consen 108 AQLEAQKAQLERLIAESEAR----ANRLQADLQ-----------IARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQ 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999998876543 445555442 112234566777777777777777777778877777
Q ss_pred HHhHHHHHHHHHH
Q 008742 394 ETNQVAELRQQTE 406 (555)
Q Consensus 394 Ek~rvaELqQQVk 406 (555)
=-.+|..|+.+..
T Consensus 173 lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 173 LQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHhc
Confidence 6667777766543
No 278
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=32.15 E-value=86 Score=26.59 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 439 EFEREILEAEYTFIADKIIQLEDKAKKLEG 468 (555)
Q Consensus 439 r~ErE~~reE~q~l~~kI~qLq~ea~KLEe 468 (555)
+.|-|.+++.+..+..+|..|+.+.+.||+
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 668899999999999999999999888874
No 279
>PRK10698 phage shock protein PspA; Provisional
Probab=32.00 E-value=5.2e+02 Score=25.65 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhh
Q 008742 382 RALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (555)
Q Consensus 382 eSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d 421 (555)
+.++..+..++.....++.|+.++.-++..++++|.+-.-
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~ 138 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQA 138 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555544444444444333
No 280
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=31.97 E-value=6.2e+02 Score=26.58 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=14.8
Q ss_pred HHHHHHHhHHHhHHHHhhhhhhhcc
Q 008742 400 ELRQQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 400 ELqQQVkl~e~~~EslKQeL~d~kQ 424 (555)
.++.+++.+++.++..++.+.+++.
T Consensus 124 ~~~a~l~~a~a~l~~a~~~~~R~~~ 148 (390)
T PRK15136 124 QYQANIELQKTALAQAQSDLNRRVP 148 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666553
No 281
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=31.72 E-value=2.7e+02 Score=31.62 Aligned_cols=59 Identities=20% Similarity=0.105 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHh--HHHHhhhhhhhcc
Q 008742 362 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVA--HEELSQRNSNTHQ 424 (555)
Q Consensus 362 TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~--~EslKQeL~d~kQ 424 (555)
+..++-+|++.||.+..++.....+.|..+.+=.. -+..|.+.|+. +--..|+|.-.+.
T Consensus 379 ~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~----~r~dW~laEae~Ll~lA~q~L~l~~d 439 (656)
T PRK06975 379 SVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSR----NRDDWMIAEVEQMLSSASQQLQLTGN 439 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ChhhhHHHHHHHHHHHHHHHHHHhCC
Confidence 55667788889998888877777777766643221 12334444433 2355566665554
No 282
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=31.41 E-value=3.4e+02 Score=23.36 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcc
Q 008742 371 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 371 aKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQ 424 (555)
.+|+..+..|-..-.-++..|..=..+.+.=.+-+...|..++...+++..++.
T Consensus 25 ~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~ 78 (88)
T PF10241_consen 25 GRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKA 78 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444444444444444444444444444444443
No 283
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=31.20 E-value=5.6e+02 Score=25.76 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=15.3
Q ss_pred HHHHHHHHHhHHHhHHHHhhhhhhhc
Q 008742 398 VAELRQQTELKEVAHEELSQRNSNTH 423 (555)
Q Consensus 398 vaELqQQVkl~e~~~EslKQeL~d~k 423 (555)
++.++.+++.++..++.++.++.+++
T Consensus 109 i~~~~~~l~~ak~~l~~a~~~~~r~~ 134 (331)
T PRK03598 109 IAQARAAVKQAQAAYDYAQNFYNRQQ 134 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666666666666654
No 284
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.51 E-value=5.3e+02 Score=25.30 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=42.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008742 326 ILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQT 405 (555)
Q Consensus 326 iL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQV 405 (555)
..+..++++.+=+..|++...+ +..+..++ ...+-.+-.=..++....+.+-..|..|.++|...-+.+..+++++
T Consensus 68 e~e~~a~~H~~la~~L~~~v~~-l~~~~~~~---~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~ 143 (239)
T cd07647 68 ETENVANAHIQLAQSLREEAEK-LEEFREKQ---KEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAY 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555666664322 33333221 2223333333455555666677777778888877777777776665
Q ss_pred HhHH
Q 008742 406 ELKE 409 (555)
Q Consensus 406 kl~e 409 (555)
....
T Consensus 144 ~~~~ 147 (239)
T cd07647 144 EKSS 147 (239)
T ss_pred Hhcc
Confidence 4433
No 285
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=30.50 E-value=4.4e+02 Score=24.33 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 008742 304 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARA 383 (555)
Q Consensus 304 aaIkeRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeS 383 (555)
.+|.+|++.+..--.+-+.+.+..+....+-...+...+..+.+.++.++.+-+ -.+...++..+.++.+-
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~---------~~~~~~~~~A~~ea~~~ 119 (156)
T CHL00118 49 KVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAK---------EIVENELKQAQKYIDSL 119 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 455566666655444444433333333333333344444444444443333321 12334556666777777
Q ss_pred HHHHHHHHHHHHhHH-HHHHHHHHhH
Q 008742 384 LAAAQKKLEMETNQV-AELRQQTELK 408 (555)
Q Consensus 384 LAaAQRkleeEk~rv-aELqQQVkl~ 408 (555)
+..|+..++.++.++ .+|+.++...
T Consensus 120 ~~~a~~~i~~ek~~a~~~l~~~v~~l 145 (156)
T CHL00118 120 LNEATKQLEAQKEKALKSLEEQVDTL 145 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777877777777664 3455555443
No 286
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=30.06 E-value=6.8e+02 Score=26.40 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhH
Q 008742 447 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEV 483 (555)
Q Consensus 447 eE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~Tss 483 (555)
...+.+..+..+|..+++++.+++.+.++.+...|++
T Consensus 209 ~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~~sv 245 (264)
T PF07246_consen 209 ARESGLRNESKWLEHELSDAKEDMIRLRNDISDFTSV 245 (264)
T ss_pred HhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Confidence 3344456666777788888888888888887666654
No 287
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=29.72 E-value=3.5e+02 Score=27.70 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 442 REILEAEYTFIADKIIQLEDKAKKLEG 468 (555)
Q Consensus 442 rE~~reE~q~l~~kI~qLq~ea~KLEe 468 (555)
....++++..+..++.+++.....++.
T Consensus 153 ~~~~~~~~~~~~~~l~~~~~~l~~~~~ 179 (370)
T PRK11578 153 LAVKQAQIGTIDAQIKRNQASLDTAKT 179 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433333
No 288
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=29.70 E-value=1.8e+02 Score=23.12 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=4.2
Q ss_pred HHHHHHHHHhH
Q 008742 398 VAELRQQTELK 408 (555)
Q Consensus 398 vaELqQQVkl~ 408 (555)
+.+|+.+|..+
T Consensus 28 ~~~Le~~~~~L 38 (64)
T PF00170_consen 28 IEELEEKVEEL 38 (64)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 289
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=29.68 E-value=5.9e+02 Score=25.57 Aligned_cols=116 Identities=22% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 008742 304 DAIKERENMVARLEGEKQSLEKILEERAKQQVKE------ASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETAN 377 (555)
Q Consensus 304 aaIkeRenmVa~LE~EKesLeKiL~er~kQqaqE------assLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~ 377 (555)
.++.+|..+.+.|..=-.+.-.++.-.++.-.-- -..|...+-+-+..++.+.++|..++--+. -+|+..|
T Consensus 73 ~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe---ekL~~AN 149 (207)
T PF05010_consen 73 KLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAE---EKLEKAN 149 (207)
T ss_pred HHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhh
Q 008742 378 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (555)
Q Consensus 378 qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~ 422 (555)
.+++..-..++-.+..=.+.+.-.+-++.+++..++--.++...+
T Consensus 150 eei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~EL 194 (207)
T PF05010_consen 150 EEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEEL 194 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 290
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=29.55 E-value=4.2e+02 Score=28.43 Aligned_cols=90 Identities=21% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhh--hh--hhHHHHHHHHHHHHHHHH--
Q 008742 383 ALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASK--GV--EFEREILEAEYTFIADKI-- 456 (555)
Q Consensus 383 SLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~--~~--r~ErE~~reE~q~l~~kI-- 456 (555)
+|..|+.++..-.+.+..|+.++...++..+..+-. ++.+...-++....|- ++ +.|.+..+..++.....+
T Consensus 92 al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~--~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~ 169 (352)
T COG1566 92 ALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQ--DLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAA 169 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHh
Q 008742 457 -----------------------IQLEDKAKKLEGNIEMTR 474 (555)
Q Consensus 457 -----------------------~qLq~ea~KLEeEI~~TK 474 (555)
.+++....+-+-++++|.
T Consensus 170 a~~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~T~ 210 (352)
T COG1566 170 AQAAQKQNLALLESEVSGAQAQVASAEAALDQAKLDLERTV 210 (352)
T ss_pred hHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhCCE
No 291
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.45 E-value=1.6e+02 Score=23.31 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008742 443 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 475 (555)
Q Consensus 443 E~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKk 475 (555)
-.++.++..+..+|.+++.+-.+|+.++...++
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344666777777777777777777777776644
No 292
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.21 E-value=1.1e+03 Score=28.48 Aligned_cols=108 Identities=21% Similarity=0.261 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 308 ERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELE-KQRHNNTRMEALQLLAKLETANADLARALAA 386 (555)
Q Consensus 308 eRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerE-qe~h~~TQmEalaRLaKLE~e~qeLAeSLAa 386 (555)
.|..|+++++-|-+-|-..|--..-|--.+ -.|=..-.|..++|+.- ...-+.||+|.+.-++.-|-.|| +--
T Consensus 644 kRk~l~~rH~leqql~redlnkketQ~d~e-halLlrqhE~treLE~rql~~vq~~r~e~ir~QHqtEl~nQ-----~eY 717 (948)
T KOG0577|consen 644 KRKMLLARHELEQQLLREDLNKKETQKDLE-HALLLRQHEATRELEYRQLNAVQRMRAELIRLQHQTELGNQ-----LEY 717 (948)
T ss_pred HHHHHHHhhhhHHHHHHHHhhHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----HHH
Confidence 566777777766665444443333222222 12222223445555432 33456677777666655444443 333
Q ss_pred HHHH-HHHHHhHHHHHHHHHHhHHHhHHHHhhhhhh
Q 008742 387 AQKK-LEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (555)
Q Consensus 387 AQRk-leeEk~rvaELqQQVkl~e~~~EslKQeL~d 421 (555)
.+|. -+-..++|++++||-+.+|+----.+...++
T Consensus 718 nkRre~ELrrKHamq~RQQPksLK~~elqIrkqfq~ 753 (948)
T KOG0577|consen 718 NKRREQELRRKHAMQVRQQPKSLKSKELQIRKQFQQ 753 (948)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhhHHHhhHHHHHHh
Confidence 3333 3446789999999999888765544444444
No 293
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=29.21 E-value=4.5e+02 Score=24.12 Aligned_cols=93 Identities=22% Similarity=0.229 Sum_probs=36.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008742 326 ILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQT 405 (555)
Q Consensus 326 iL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQV 405 (555)
.|..|.+.|..+...++..+.++.+.++. -++| .-+...|+.++-.++++|..=+-..-.+++.=..+---|...-
T Consensus 34 dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~-L~~~---~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eE 109 (141)
T PF13874_consen 34 DLKKRVEAQEEEIAQHRERLKEINDKLEE-LQKH---DLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEE 109 (141)
T ss_dssp ------------HHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 46677888888888888888877777653 3555 4456777888877887777666555555554333333344444
Q ss_pred HhHHHhHHHHhhhhhhh
Q 008742 406 ELKEVAHEELSQRNSNT 422 (555)
Q Consensus 406 kl~e~~~EslKQeL~d~ 422 (555)
+.+..-++.+..+|.+.
T Consensus 110 e~L~~~le~l~~~l~~p 126 (141)
T PF13874_consen 110 EELRKRLEALEAQLNAP 126 (141)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHcCc
Confidence 44444455555555443
No 294
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=29.04 E-value=4e+02 Score=23.39 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=27.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 434 ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEM 472 (555)
Q Consensus 434 eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~ 472 (555)
....++...+.++..+..+..++..|+.+...++..|..
T Consensus 68 ~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 68 AIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777777777777776653
No 295
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=28.29 E-value=8.4e+02 Score=27.53 Aligned_cols=79 Identities=22% Similarity=0.179 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhh
Q 008742 339 SELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (555)
Q Consensus 339 ssLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQe 418 (555)
+.|-+.|..-.+-++.|-+.|... +.+||..++.- +...-...++..+.-=..|-||++..+..-+++.-.
T Consensus 142 d~l~~~ld~e~~~~~~e~~~Y~~~-------l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~ 212 (447)
T KOG2751|consen 142 DVLLNKLDKEVEDAEDEVDTYKAC-------LQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQ 212 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566666666543 44555555543 111112222222222233444555555555555555
Q ss_pred hhhhcccc
Q 008742 419 NSNTHQTG 426 (555)
Q Consensus 419 L~d~kQka 426 (555)
|...+.++
T Consensus 213 l~e~~~~~ 220 (447)
T KOG2751|consen 213 LKELEFKA 220 (447)
T ss_pred HHHHHHHH
Confidence 55544444
No 296
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.79 E-value=1.1e+03 Score=28.11 Aligned_cols=70 Identities=19% Similarity=0.155 Sum_probs=42.4
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhh
Q 008742 351 AFELEKQRHNNTRMEALQLLAKLET-------ANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 420 (555)
Q Consensus 351 alerEqe~h~~TQmEalaRLaKLE~-------e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~ 420 (555)
++...-.--.+++.-+=.++++++. +...+--+|..-++.+.....++.+..|++.-+...+.++.+..+
T Consensus 148 e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~q 224 (716)
T KOG4593|consen 148 EKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQ 224 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555566666543 334555666777777777777777777777766666665554443
No 297
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=27.65 E-value=1.6e+02 Score=28.68 Aligned_cols=36 Identities=33% Similarity=0.322 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhH
Q 008742 377 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 412 (555)
Q Consensus 377 ~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~ 412 (555)
-+.||+||-.|.+++-++...-++++++++..+...
T Consensus 107 Fa~LseAL~~Ad~~aReev~~R~~~~~~~a~ke~~~ 142 (158)
T PF02731_consen 107 FAKLSEALYIADRKAREEVRQRAEMQKELAEKEKEE 142 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888888888888777666543
No 298
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=27.64 E-value=3.1e+02 Score=23.27 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008742 443 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 474 (555)
Q Consensus 443 E~~reE~q~l~~kI~qLq~ea~KLEeEI~~TK 474 (555)
+.+++|-..|..++.+++.+.+.|-+.++.+|
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445544444444444433
No 299
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.51 E-value=3.5e+02 Score=23.94 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhh
Q 008742 368 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 420 (555)
Q Consensus 368 aRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~ 420 (555)
+=+.|||+..+..-..++..|--.++=|.+-..|+|.+..+..+-+.|.++..
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ene 56 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENE 56 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 44678899999999999888888877777777777776666655555544433
No 300
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=27.37 E-value=6e+02 Score=25.08 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHH
Q 008742 308 ERENMVARLEGEKQSLEKILEERAKQQVKEASE--LQTSMMETMDAF 352 (555)
Q Consensus 308 eRenmVa~LE~EKesLeKiL~er~kQqaqEass--LQ~~m~ET~Qal 352 (555)
.++..+..-+|+-+++.++++.-......++.. |....++||+++
T Consensus 191 ~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~ 237 (262)
T cd03407 191 AAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAY 237 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHH
Confidence 344455555677777777776554333333333 345666776653
No 301
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=27.11 E-value=3.6e+02 Score=22.29 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccc-hhhhhh--hhhhhhhhHHHHHHHHHHHHHHH
Q 008742 379 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG-IYLKRL--AASKGVEFEREILEAEYTFIADK 455 (555)
Q Consensus 379 eLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQka-s~l~ql--~eL~~~r~ErE~~reE~q~l~~k 455 (555)
.|...|....++...=..-+..|...+...+..++..++.+..+=... ..++.- .-+..+.-+ .++-...+..+
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~---~~~~~~~l~~q 80 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQ---KENKLKVLEQQ 80 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 344555555555555555555555555555555555555544321110 001100 001111111 12333445556
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCchhHH-----HHHHHHHHHH
Q 008742 456 IIQLEDKAKKLEGNIEMTRKEIEDPTEVE-----IELKRRLGQL 494 (555)
Q Consensus 456 I~qLq~ea~KLEeEI~~TKktl~~~TssE-----~ELE~RLhQL 494 (555)
+.+++....++..=+..+...+.+....+ .-+-.||.+|
T Consensus 81 ~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~l 124 (127)
T smart00502 81 LESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQNL 124 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 66666666666666666666665444322 3455555544
No 302
>PRK12704 phosphodiesterase; Provisional
Probab=27.09 E-value=9.2e+02 Score=27.00 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=12.1
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHhHHHHhhh
Q 008742 388 QKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (555)
Q Consensus 388 QRkleeEk~rvaELqQQVkl~e~~~EslKQe 418 (555)
++.++...+.+...+.+++..+..++.+.++
T Consensus 109 e~eL~~re~~Le~re~eLe~~~~~~~~~~~~ 139 (520)
T PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEE 139 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444433333
No 303
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=27.03 E-value=6.2e+02 Score=24.93 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=8.7
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHH
Q 008742 358 RHNNTRMEALQLLAKLETANADL 380 (555)
Q Consensus 358 ~h~~TQmEalaRLaKLE~e~qeL 380 (555)
.|-.+..++-..++....+.-.|
T Consensus 51 k~e~~e~~Lpqll~~h~eEvr~L 73 (194)
T PF15619_consen 51 KYEDTEAELPQLLQRHNEEVRVL 73 (194)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 304
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.98 E-value=3e+02 Score=24.37 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhc
Q 008742 441 EREILEAEYTFIADKIIQLEDKAKKL--EGNIEMTRKEI 477 (555)
Q Consensus 441 ErE~~reE~q~l~~kI~qLq~ea~KL--EeEI~~TKktl 477 (555)
+.+.+.+.+.....++..++.+...| ..+++..+..|
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l 74 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLEL 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44445555555566666666665554 55555555444
No 305
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=26.78 E-value=6.8e+02 Score=25.57 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 444 ILEAEYTFIADKIIQLEDKAKKLEGN 469 (555)
Q Consensus 444 ~~reE~q~l~~kI~qLq~ea~KLEeE 469 (555)
-+++|+++....|..|+.++.+|+.|
T Consensus 97 ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 97 ELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444
No 306
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=26.65 E-value=63 Score=23.76 Aligned_cols=12 Identities=58% Similarity=0.833 Sum_probs=6.8
Q ss_pred CccHHHHHHHHH
Q 008742 275 SESESEREREER 286 (555)
Q Consensus 275 ~dse~e~~re~r 286 (555)
+|.|-+|.|++|
T Consensus 9 ed~ea~r~reeR 20 (28)
T PF10587_consen 9 EDEEAERIREER 20 (28)
T ss_pred ccHHHHHHHHHH
Confidence 455666555555
No 307
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=26.50 E-value=1.7e+02 Score=29.15 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=44.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 008742 437 GVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRR 490 (555)
Q Consensus 437 ~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~R 490 (555)
.+-.||-....=++..-.+|..|+.+-.+|+.++.-|++-|+|-|.-|.-|-.|
T Consensus 113 ~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSSR 166 (179)
T PF13942_consen 113 QLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSSR 166 (179)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcc
Confidence 344566666666677778999999999999999999999999999888766655
No 308
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=26.46 E-value=4.8e+02 Score=26.38 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 384 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKA 463 (555)
Q Consensus 384 LAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea 463 (555)
|.-+|--+.....-+--|+.|++...+.+......+.++.. ++..-..|.+....|++.....+..|+.++
T Consensus 19 Lke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~---------~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl 89 (202)
T PF06818_consen 19 LKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQD---------SLRTKQLELEVCENELQRKKNEAELLREKL 89 (202)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHH---------HHHHhhHhHHHhHHHHHHHhCHHHHhhhhh
Q ss_pred HHHHHHHHHHhhhc
Q 008742 464 KKLEGNIEMTRKEI 477 (555)
Q Consensus 464 ~KLEeEI~~TKktl 477 (555)
.+++.++..+|..+
T Consensus 90 ~~le~El~~Lr~~l 103 (202)
T PF06818_consen 90 GQLEAELAELREEL 103 (202)
T ss_pred hhhHHHHHHHHHHH
No 309
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=26.41 E-value=7.5e+02 Score=25.74 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=10.3
Q ss_pred HHHHHHhHHHHHHHHHHhHHHh
Q 008742 390 KLEMETNQVAELRQQTELKEVA 411 (555)
Q Consensus 390 kleeEk~rvaELqQQVkl~e~~ 411 (555)
.|.+.--.|-.++.+++..+..
T Consensus 276 ~y~~~hP~v~~l~~~i~~l~~~ 297 (444)
T TIGR03017 276 RLGPNHPQYKRAQAEINSLKSQ 297 (444)
T ss_pred HhCCCCcHHHHHHHHHHHHHHH
Confidence 3444444555555544444443
No 310
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=26.26 E-value=6.6e+02 Score=25.01 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=13.2
Q ss_pred HHHHHHHHHhHHHhHHHHhhhhhhhc
Q 008742 398 VAELRQQTELKEVAHEELSQRNSNTH 423 (555)
Q Consensus 398 vaELqQQVkl~e~~~EslKQeL~d~k 423 (555)
++.++.+++.++..+..++.++.+|+
T Consensus 99 ~~~~~~~~~~~~~~l~~a~~~~~R~~ 124 (327)
T TIGR02971 99 VAAQQATLNRLEAELETAQREVDRYR 124 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555544
No 311
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.19 E-value=1.1e+03 Score=27.64 Aligned_cols=108 Identities=9% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 310 ENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQK 389 (555)
Q Consensus 310 enmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQR 389 (555)
+.+-.-+..+...+++++++-..+... +......+....++++..++.|..-..++-+ .+..-+.++-..|+.
T Consensus 500 ~~A~~~~~~~~~~~~~li~~L~~~~~~-~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~------~~~~~~~~a~~ea~~ 572 (771)
T TIGR01069 500 EQAKTFYGEFKEEINVLIEKLSALEKE-LEQKNEHLEKLLKEQEKLKKELEQEMEELKE------RERNKKLELEKEAQE 572 (771)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHH---hHHHhHHHHhhhhhhhcc
Q 008742 390 KLEMETNQVAELRQQTE---LKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 390 kleeEk~rvaELqQQVk---l~e~~~EslKQeL~d~kQ 424 (555)
.+.+-+.++..+-.+++ ..+......++++.+++.
T Consensus 573 ~~~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~ 610 (771)
T TIGR01069 573 ALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKE 610 (771)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
No 312
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.18 E-value=3.3e+02 Score=30.70 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=10.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhH
Q 008742 387 AQKKLEMETNQVAELRQQTELK 408 (555)
Q Consensus 387 AQRkleeEk~rvaELqQQVkl~ 408 (555)
.|.++.+...++++|++|++..
T Consensus 67 nqSALteqQ~kasELEKqLaaL 88 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444
No 313
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=26.04 E-value=3.6e+02 Score=21.87 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=14.8
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhc
Q 008742 389 KKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (555)
Q Consensus 389 RkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~k 423 (555)
+.+..-..+.....+++..+.....+|...+....
T Consensus 5 ~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 39 (123)
T PF02050_consen 5 QELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333334444445555555555556655555544
No 314
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.00 E-value=4e+02 Score=22.42 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 008742 370 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTEL 407 (555)
Q Consensus 370 LaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl 407 (555)
++=.|....+|.++|++-|+.++.-.+++..|.++++.
T Consensus 17 lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 17 LAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455677777777777766666666666555544
No 315
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=25.97 E-value=5.6e+02 Score=24.12 Aligned_cols=38 Identities=11% Similarity=0.187 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHH
Q 008742 369 LLAKLETANADLARALAAAQKKLEMETNQV-AELRQQTE 406 (555)
Q Consensus 369 RLaKLE~e~qeLAeSLAaAQRkleeEk~rv-aELqQQVk 406 (555)
+...++..+.+..+-+..++..++.|+.++ .++++++-
T Consensus 105 ~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~eii 143 (167)
T PRK08475 105 TQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVL 143 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666677777777777777776554 45555543
No 316
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=25.94 E-value=3.3e+02 Score=24.65 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 008742 437 GVEFEREILEAEYTFIADKIIQLED 461 (555)
Q Consensus 437 ~~r~ErE~~reE~q~l~~kI~qLq~ 461 (555)
.++.|-...++++..|.++|..|+-
T Consensus 66 ~l~~eLk~a~~qi~~Ls~kv~eLq~ 90 (96)
T PF11365_consen 66 ELQEELKLAREQINELSGKVMELQY 90 (96)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 4666677777788888887777653
No 317
>PRK00295 hypothetical protein; Provisional
Probab=25.87 E-value=2.9e+02 Score=23.00 Aligned_cols=40 Identities=23% Similarity=0.122 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 008742 369 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK 408 (555)
Q Consensus 369 RLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~ 408 (555)
|++=.|....+|.++|++-|+.++.-.+++..|.++++..
T Consensus 13 kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 13 RQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555666677788888887777766666666666665543
No 318
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.57 E-value=2.5e+02 Score=23.59 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 008742 364 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKE 409 (555)
Q Consensus 364 mEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e 409 (555)
++.-+|+..||...+=.-..+..--.-+..+-+.++.|+.+++.+.
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~ 49 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT 49 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788888887766666665555555555555555555555443
No 319
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.52 E-value=3.7e+02 Score=24.85 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 008742 485 IELKRRLGQLTDHLIQKQAQV 505 (555)
Q Consensus 485 ~ELE~RLhQLTD~LIQKQTqL 505 (555)
.+|+.||..+-+.|=.|=-.|
T Consensus 78 ~~l~~ry~t~LellGEK~E~v 98 (120)
T PF12325_consen 78 EELQQRYQTLLELLGEKSEEV 98 (120)
T ss_pred HHHHHHHHHHHHHhcchHHHH
Confidence 455666655555554443333
No 320
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=25.29 E-value=5.6e+02 Score=23.90 Aligned_cols=80 Identities=14% Similarity=0.241 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHh
Q 008742 338 ASELQTSMMETMDAFELEKQRHNNTRMEALQ-LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 416 (555)
Q Consensus 338 assLQ~~m~ET~QalerEqe~h~~TQmEala-RLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslK 416 (555)
++.+++++.++-..++. -..+.+.+|.+. |..-||.+....=..|..+.-++.+=..++..+.-+|..++...+.+-
T Consensus 51 ld~~~~~l~~~k~~lee--~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E 128 (143)
T PF12718_consen 51 LDKLEEQLKEAKEKLEE--SEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWE 128 (143)
T ss_pred HHHHHHHHHHHHHHHHh--HHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 44444444444433322 122233444443 345566666666666666666666666666666666666555555444
Q ss_pred hhh
Q 008742 417 QRN 419 (555)
Q Consensus 417 QeL 419 (555)
.++
T Consensus 129 ~k~ 131 (143)
T PF12718_consen 129 EKY 131 (143)
T ss_pred HHH
Confidence 433
No 321
>PRK04406 hypothetical protein; Provisional
Probab=25.23 E-value=2.5e+02 Score=23.96 Aligned_cols=40 Identities=20% Similarity=0.109 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 008742 369 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK 408 (555)
Q Consensus 369 RLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~ 408 (555)
|++=.|....+|.++|++-|+.++.-.+++..|.++++..
T Consensus 19 ~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 19 QLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566677888888888877776666666666665543
No 322
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=25.14 E-value=8.3e+02 Score=25.79 Aligned_cols=16 Identities=25% Similarity=0.323 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 008742 338 ASELQTSMMETMDAFE 353 (555)
Q Consensus 338 assLQ~~m~ET~Qale 353 (555)
++=|++.+.+.+++.+
T Consensus 168 V~WLR~~L~Ei~Ea~e 183 (269)
T PF05278_consen 168 VDWLRSKLEEILEAKE 183 (269)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4556666666665543
No 323
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=25.10 E-value=1.3e+03 Score=27.87 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 008742 344 SMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARA 383 (555)
Q Consensus 344 ~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeS 383 (555)
-+.+.|+.|+.|-..-=..=-.+|.-..||+.-+-++++|
T Consensus 459 ~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa 498 (762)
T PLN03229 459 ALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKA 498 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhc
Confidence 3445556555554332222233455555555555555554
No 324
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=24.97 E-value=8.7e+02 Score=25.95 Aligned_cols=24 Identities=4% Similarity=0.112 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 008742 439 EFEREILEAEYTFIADKIIQLEDK 462 (555)
Q Consensus 439 r~ErE~~reE~q~l~~kI~qLq~e 462 (555)
+-+..-+.++++.|..+++....+
T Consensus 171 k~~~~e~~eki~~la~eaqe~he~ 194 (294)
T COG1340 171 KKKAREIHEKIQELANEAQEYHEE 194 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443333
No 325
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=24.89 E-value=4.6e+02 Score=22.75 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHhHHHHh
Q 008742 386 AAQKKLEMETNQVAELRQQTELKEVAHEELS 416 (555)
Q Consensus 386 aAQRkleeEk~rvaELqQQVkl~e~~~EslK 416 (555)
.|.++++.+.....+....++-+...++.++
T Consensus 64 rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~ 94 (126)
T PF13863_consen 64 RAEKRAEEEKKKKEEKEAEIKKLKAELEELK 94 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333333333333
No 326
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.63 E-value=5.9e+02 Score=31.89 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchh-hhhhh----
Q 008742 359 HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY-LKRLA---- 433 (555)
Q Consensus 359 h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~-l~ql~---- 433 (555)
|+.+|||.+.---- +--+-..+...+++++++|+-+ |++|-.+.+..++.|++.|.--.|-.++ ..-+.
T Consensus 564 Y~~A~~Ev~~~~l~----ndpvq~~~~~le~qheEeKr~A--LE~Qr~~yE~~~eqLr~~lsPst~~~~~~~~~~a~~s~ 637 (1714)
T KOG0241|consen 564 YEFAQMEVIMKTLN----NDPVQNVVQSLEKQHEEEKRSA--LEEQRLMYERELEQLRQQLSPSTQPQPSGMDRLAYSSQ 637 (1714)
T ss_pred hHHHHHHHHHhccC----CcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcCCCCh
Q ss_pred ----hhhhhhhHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 008742 434 ----ASKGVEFERE-ILEAEYTFIADKIIQ---LEDKAKKLEGNIE 471 (555)
Q Consensus 434 ----eL~~~r~ErE-~~reE~q~l~~kI~q---Lq~ea~KLEeEI~ 471 (555)
-+.-|-.||| |.++.+-.|..+|.. |=-+|-=|-+||.
T Consensus 638 taq~k~~~WAeerdemf~~SL~rLr~~iv~AN~LVrEAN~laeEm~ 683 (1714)
T KOG0241|consen 638 TAQQKVTQWAEERDEMFRQSLARLREQIVKANTLVREANFLAEEMS 683 (1714)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 327
>PRK00736 hypothetical protein; Provisional
Probab=24.17 E-value=2.9e+02 Score=22.97 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 008742 368 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK 408 (555)
Q Consensus 368 aRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~ 408 (555)
.|++-.|....+|..+|++-|+.++.-.+++..|..+++..
T Consensus 12 ~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 12 IRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666677778888888888888877777777777766553
No 328
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.73 E-value=6.1e+02 Score=23.78 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 440 FEREILEAEYTFIADKIIQLEDKAKKLEGNI 470 (555)
Q Consensus 440 ~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI 470 (555)
.|...++..+..+.+.+..++.-+..|+..|
T Consensus 89 ~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 89 DEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 329
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.55 E-value=1.2e+03 Score=26.90 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 008742 325 KILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARAL 384 (555)
Q Consensus 325 KiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSL 384 (555)
+.|..|-|.|-++...-+..|-.+.+.+.+=+ ||++ -+..++.++..++++|.+=+
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq--k~~a--d~~~KI~~~k~r~~~Ls~Ri 392 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQ--KHHA--DAVAKIEEAKNRHVELSHRI 392 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhh--hHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777766666555 3333 24555555666666665543
No 330
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=23.53 E-value=4.5e+02 Score=22.20 Aligned_cols=53 Identities=17% Similarity=0.364 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh--ccCch------hHHHHHHHHHHHHHHHH
Q 008742 446 EAEYTFIADKIIQLED-KAKKLEGNIEMTRKE--IEDPT------EVEIELKRRLGQLTDHL 498 (555)
Q Consensus 446 reE~q~l~~kI~qLq~-ea~KLEeEI~~TKkt--l~~~T------ssE~ELE~RLhQLTD~L 498 (555)
.+.|.+|...+..|+. +.-.+-.+|..++-. +..-. ..+..|+.|+++|.+.|
T Consensus 8 ~~g~~~L~~EL~~L~~~~rpe~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~rI~~Le~~l 69 (74)
T PF03449_consen 8 PEGYEKLQAELEHLKNVERPEIAEEIAEAREQGDLSENAEYHAAKERQAFLEARIRELEERL 69 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788877776 455677777776653 31111 45689999999998876
No 331
>PRK02119 hypothetical protein; Provisional
Probab=23.39 E-value=2.9e+02 Score=23.34 Aligned_cols=39 Identities=18% Similarity=0.092 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 008742 369 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTEL 407 (555)
Q Consensus 369 RLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl 407 (555)
|++=.|....+|.++|++-|+.++.-.+++..|.++++.
T Consensus 17 rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 17 KIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455556677777777777766666666666555544
No 332
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=23.26 E-value=9.3e+02 Score=25.72 Aligned_cols=102 Identities=17% Similarity=0.264 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhh-hhh----hhhhhhhhHH
Q 008742 368 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL-KRL----AASKGVEFER 442 (555)
Q Consensus 368 aRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l-~ql----~eL~~~r~Er 442 (555)
+..-+|-.+...|.+=|-.++..+ +...++.+|..++...+....++..+++.|-+-+... +.+ ....+++-+.
T Consensus 131 e~E~~lvq~I~~L~k~le~~~k~~-e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkea 209 (294)
T COG1340 131 EEERELVQKIKELRKELEDAKKAL-EENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEA 209 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666777777776544 5678888888888888988898888888887766532 233 3455677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 443 EILEAEYTFIADKIIQLEDKAKKLEGNI 470 (555)
Q Consensus 443 E~~reE~q~l~~kI~qLq~ea~KLEeEI 470 (555)
+.+-+++-.+..+|..++.+...++.+|
T Consensus 210 de~he~~ve~~~~~~e~~ee~~~~~~el 237 (294)
T COG1340 210 DELHEEFVELSKKIDELHEEFRNLQNEL 237 (294)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8888888777777777776655544444
No 333
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.15 E-value=3e+02 Score=27.73 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=30.9
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008742 350 DAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTE 406 (555)
Q Consensus 350 QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVk 406 (555)
..+++-...|++.+.+...++..|..+...|==-+-..+..++.=+.|-.++-+++.
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666665555554444444444444444444443
No 334
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=22.78 E-value=2e+02 Score=29.34 Aligned_cols=54 Identities=20% Similarity=0.153 Sum_probs=32.2
Q ss_pred HHHHHHHHHhHHHhHHHH----hhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 008742 398 VAELRQQTELKEVAHEEL----SQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIA 453 (555)
Q Consensus 398 vaELqQQVkl~e~~~Esl----KQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~ 453 (555)
++||+|.+--....+|.+ +.|+.++++...-+..+ +.-.--|||-+|+.+|.|.
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~L--l~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDL--LKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 578888888888888874 34444444322111111 2334457888888877776
No 335
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.59 E-value=4.2e+02 Score=28.42 Aligned_cols=93 Identities=19% Similarity=0.160 Sum_probs=61.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCchhHH--HHHHHHHHHHHHHHHHHhhhhccc
Q 008742 436 KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE-----IEDPTEVE--IELKRRLGQLTDHLIQKQAQVFPL 508 (555)
Q Consensus 436 ~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt-----l~~~TssE--~ELE~RLhQLTD~LIQKQTqLEAL 508 (555)
.+++--.|.++-|-+.-+-+|..|++-.+|..-..+--|+. .+|.+-+| ..|+++-.-|+--|.-|-.||=.|
T Consensus 21 qelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~l 100 (307)
T PF10481_consen 21 QELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFL 100 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHH
Confidence 34444456666777777777777777665533222222222 24455444 778888888999999999998888
Q ss_pred cCCCCccchhHHHHH-HHHhh
Q 008742 509 NFLPGRTTIPVMRML-SLAFF 528 (555)
Q Consensus 509 STEKnSLv~QLERLE-~~~~f 528 (555)
---=++.-.|+++|| -|+.+
T Consensus 101 EgQl~s~Kkqie~Leqelkr~ 121 (307)
T PF10481_consen 101 EGQLNSCKKQIEKLEQELKRC 121 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777888899988 45443
No 336
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=22.57 E-value=1.6e+02 Score=28.80 Aligned_cols=44 Identities=27% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHH-----HHHHHHHHHH
Q 008742 457 IQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRR-----LGQLTDHLIQ 500 (555)
Q Consensus 457 ~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~R-----LhQLTD~LIQ 500 (555)
..|+.+..|+|+||.-.|.-|.-+-.--.||+++ |..|+..|.+
T Consensus 32 eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlsk 80 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSK 80 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHH
No 337
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=22.52 E-value=9.3e+02 Score=25.46 Aligned_cols=131 Identities=20% Similarity=0.193 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH-----------------------------------HHHHH
Q 008742 337 EASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETA-----------------------------------NADLA 381 (555)
Q Consensus 337 EassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e-----------------------------------~qeLA 381 (555)
..+.+|-...+-..++++.+..|...+.|+..--..|... -++-|
T Consensus 127 ~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a 206 (302)
T PF09738_consen 127 TLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAA 206 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhh
Confidence 3556666666777788888888888888877766666533 36667
Q ss_pred HHHHHH-HHHHHHHHhHHH----HHHHHHHhHHHhHHHHhhhhhhhcccch--hhhhhhhhh-hhhhHHHHHHHHHHHHH
Q 008742 382 RALAAA-QKKLEMETNQVA----ELRQQTELKEVAHEELSQRNSNTHQTGI--YLKRLAASK-GVEFEREILEAEYTFIA 453 (555)
Q Consensus 382 eSLAaA-QRkleeEk~rva----ELqQQVkl~e~~~EslKQeL~d~kQkas--~l~ql~eL~-~~r~ErE~~reE~q~l~ 453 (555)
.+|..+ +--|+...++.+ +|..||.-++..++..+.+-..-+.... .+..++.++ .--|=-+++| .+.
T Consensus 207 ~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~~~~~~~~~~~l~~~~~~En~d~~~~d~qr----dan 282 (302)
T PF09738_consen 207 QLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQSEGRRQKSSSENGVLGDDEDLENTDLHFIDLQR----DAN 282 (302)
T ss_pred hhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccccccccccccHHHhhh----HHH
Confidence 777777 333444444433 3667778888777765443332111111 121111111 0111123333 456
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008742 454 DKIIQLEDKAKKLEGNIE 471 (555)
Q Consensus 454 ~kI~qLq~ea~KLEeEI~ 471 (555)
-+|.-++++++|.|-||.
T Consensus 283 rqisd~KfKl~KaEQeit 300 (302)
T PF09738_consen 283 RQISDYKFKLQKAEQEIT 300 (302)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 677779999999988874
No 338
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.47 E-value=9.4e+02 Score=25.46 Aligned_cols=42 Identities=24% Similarity=0.243 Sum_probs=20.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008742 435 SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 476 (555)
Q Consensus 435 L~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt 476 (555)
+++++-|.+-.++.+..+.....+|..+..++..+.+..++.
T Consensus 158 leele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r 199 (290)
T COG4026 158 LEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKR 199 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 344444444444444444444445555555555555555444
No 339
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=22.30 E-value=1.2e+03 Score=26.58 Aligned_cols=87 Identities=22% Similarity=0.268 Sum_probs=48.1
Q ss_pred HhHHHhHHHHhhhhhhhcccchhhhh-----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cC
Q 008742 406 ELKEVAHEELSQRNSNTHQTGIYLKR-----LAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI-ED 479 (555)
Q Consensus 406 kl~e~~~EslKQeL~d~kQkas~l~q-----l~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl-~~ 479 (555)
+++++-.|++.++|....---++++. +.+++.++.|.+.+-+.|.+-|-.+.-| ++.+|++-+..|.-- +|
T Consensus 389 AMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahL---aqalEaerqaLRqCQrEn 465 (593)
T KOG4807|consen 389 AMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHL---AQALEAERQALRQCQREN 465 (593)
T ss_pred HHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 45566667777777665533333333 2467778888888888888777655443 334444444444321 11
Q ss_pred ch--hHHHHHHHHHHHHH
Q 008742 480 PT--EVEIELKRRLGQLT 495 (555)
Q Consensus 480 ~T--ssE~ELE~RLhQLT 495 (555)
.- .---||-|||..=-
T Consensus 466 QELnaHNQELnnRLaaEI 483 (593)
T KOG4807|consen 466 QELNAHNQELNNRLAAEI 483 (593)
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 11 11256777765433
No 340
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=21.95 E-value=5.8e+02 Score=24.23 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=4.6
Q ss_pred HHHHhhhhhhhc
Q 008742 412 HEELSQRNSNTH 423 (555)
Q Consensus 412 ~EslKQeL~d~k 423 (555)
.+.|+.|..+++
T Consensus 84 i~rL~~ENe~lR 95 (135)
T TIGR03495 84 IERLKRENEDLR 95 (135)
T ss_pred HHHHHHcCHHHH
Confidence 333444433333
No 341
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.88 E-value=3.8e+02 Score=20.99 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008742 439 EFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 476 (555)
Q Consensus 439 r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt 476 (555)
+.+.+.++..|-.|...-..|..+-.+|.+++...+.-
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566666666666666666655566555554443
No 342
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=21.80 E-value=1.6e+03 Score=27.80 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhh
Q 008742 368 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 420 (555)
Q Consensus 368 aRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~ 420 (555)
+-..+|.++.++|=+-.+-.+++++....-..+...+..-+.-.++.+++...
T Consensus 431 ek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~ 483 (980)
T KOG0980|consen 431 EKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAG 483 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544444444444444444444444444444444444333
No 343
>PRK04325 hypothetical protein; Provisional
Probab=21.56 E-value=3.2e+02 Score=23.08 Aligned_cols=41 Identities=27% Similarity=0.159 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 008742 368 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK 408 (555)
Q Consensus 368 aRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~ 408 (555)
.|++=.|....+|.++|+.-|+.++.-.+++..|..+++..
T Consensus 16 ~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 16 IQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677778888888888888877777777776666554
No 344
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=21.51 E-value=1.2e+03 Score=26.20 Aligned_cols=156 Identities=22% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008742 320 KQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVA 399 (555)
Q Consensus 320 KesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rva 399 (555)
+....+++.+-..+...-..+....+.+-...+..|-+ .|+..+-.+++.+..+.-.-|..-+.+++......+
T Consensus 20 k~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~Eae------eE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Le 93 (514)
T TIGR03319 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAK------EEVHKLRAELERELKERRNELQRLERRLLQREETLD 93 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Q 008742 400 ELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKK----------LEGN 469 (555)
Q Consensus 400 ELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~K----------LEeE 469 (555)
.-...+...+..++...++|...+. ++...+.|.+.+.+++...-.+|..|-.+.+| ++.+
T Consensus 94 kr~e~Lekre~~Le~ke~~L~~re~---------eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~~~~ 164 (514)
T TIGR03319 94 RKMESLDKKEENLEKKEKELSNKEK---------NLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHE 164 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhccCchhHHHHHHHH
Q 008742 470 IEMTRKEIEDPTEVEIELKRR 490 (555)
Q Consensus 470 I~~TKktl~~~TssE~ELE~R 490 (555)
+..+-+.++.-+..+.+=+.|
T Consensus 165 ~~~~~~~~~~~~~~~a~~~a~ 185 (514)
T TIGR03319 165 AAKLIKEIEEEAKEEADKKAK 185 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 345
>PF10635 DisA-linker: DisA bacterial checkpoint controller linker region ; InterPro: IPR018906 The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. the first, N-terminal region, from 1-145 is globular and is represented by IPR003390 from INTERPRO; the next 146-289 residues is this domain that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), thus forming a spine like-linker between domains 1 and 3. The C-terminal residues of domain 3 (IPR000445 from INTERPRO), represent the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branched DNA, but not to duplex or single-stranded DNA, suggesting a role for DisA as a monitor of the presence of stalled replication forks or recombination intermediates via DNA structure-modulated c-di-AMP synthesis []. ; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A.
Probab=21.27 E-value=1.8e+02 Score=27.73 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 008742 341 LQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETAN-ADLARALAAAQKKLE 392 (555)
Q Consensus 341 LQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~-qeLAeSLAaAQRkle 392 (555)
+=+++-|+++.+ ++|++.=.+++.+|+-||-+. +.+...++..||-..
T Consensus 7 il~raNQAl~TL----ErYr~~ld~~l~~L~~lE~ed~VTl~DV~~vlqr~em 55 (145)
T PF10635_consen 7 ILARANQALQTL----ERYRARLDQVLTNLSALEFEDLVTLRDVASVLQRFEM 55 (145)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTT--BHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHccHHHHcCCccHHHHHHHHHHHHH
Confidence 334444444444 469999999999999999987 888888888888644
No 346
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.14 E-value=1.7e+03 Score=27.98 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 008742 308 ERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETM-------DAFELEKQRHNNTRMEALQLLAKLETANADL 380 (555)
Q Consensus 308 eRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~-------QalerEqe~h~~TQmEalaRLaKLE~e~qeL 380 (555)
-++.+.+.+..++-.|+..|.---. +.+.+..=++.|++-- -.|-.+-..-.+-++-++.=+.+++-+..+-
T Consensus 262 ~~~d~~~~~~~~i~ele~~l~~l~~-ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~ 340 (1200)
T KOG0964|consen 262 KVEDESEDLKCEIKELENKLTNLRE-EKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEK 340 (1200)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 4667777777666666655543322 2222222233333222 1255555566666667777777777777766
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHH
Q 008742 381 ARALAAAQKKLEMETNQVAELRQQTELKEVAHE 413 (555)
Q Consensus 381 AeSLAaAQRkleeEk~rvaELqQQVkl~e~~~E 413 (555)
-.-|..+.-+|..-+...+.+.-++..++...-
T Consensus 341 ~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~ 373 (1200)
T KOG0964|consen 341 KDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQR 373 (1200)
T ss_pred HHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 666677777776666555555444444443333
No 347
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=21.04 E-value=5.7e+02 Score=23.14 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhccCchhHH-HHHHHHHHHHHHHH
Q 008742 466 LEGNIEMTRKEIEDPTEVE-IELKRRLGQLTDHL 498 (555)
Q Consensus 466 LEeEI~~TKktl~~~TssE-~ELE~RLhQLTD~L 498 (555)
+++.+..+-+.|--||..+ .+|+.|+.+|+..|
T Consensus 79 ~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l 112 (118)
T TIGR01837 79 FDERVEQALNRLNIPSREEIEALSAKIEQLAVQV 112 (118)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 5666666667777788877 78999999988755
No 348
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=21.01 E-value=7.8e+02 Score=23.95 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008742 323 LEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELR 402 (555)
Q Consensus 323 LeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELq 402 (555)
+....+..++.+.+=+..|++.+.+-+..+-.+....+.. +..=..++....+..-..|..+.++|+..-..+..++
T Consensus 65 i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~---~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~ 141 (236)
T cd07651 65 LRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKK---IQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYT 141 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3333444555666667778888888777765554433332 2223336666677777778888888877766666665
Q ss_pred HH
Q 008742 403 QQ 404 (555)
Q Consensus 403 QQ 404 (555)
.|
T Consensus 142 ~~ 143 (236)
T cd07651 142 LQ 143 (236)
T ss_pred HH
Confidence 54
No 349
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.94 E-value=5.3e+02 Score=22.03 Aligned_cols=58 Identities=22% Similarity=0.270 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHhHHHhHHHHhhhhhh
Q 008742 364 MEALQLLAKLETANADLARALAAAQKK---LEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (555)
Q Consensus 364 mEalaRLaKLE~e~qeLAeSLAaAQRk---leeEk~rvaELqQQVkl~e~~~EslKQeL~d 421 (555)
.++...+..|.+++-.+++.++.+-+. .+.-+.++.++..+++.++..+..+..++..
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777788887777664 5666677777777777777777777666654
No 350
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=20.81 E-value=5.7e+02 Score=24.08 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=43.1
Q ss_pred HHHHHHhhhh---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008742 294 LAEKAAAKAG---DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAF 352 (555)
Q Consensus 294 laE~~aAKaa---aaIkeRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~Qal 352 (555)
+...+..|+. .+|+.-+..++.+..|+.+ |+++.+.-..-+..|++-+...|+.+
T Consensus 34 i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~kr----L~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 34 IEDEIEEKADNIAKVIKNLEADIEAIKAEIKR----LQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445555555 6788888888888899888 56678888888999999999999874
No 351
>PLN03188 kinesin-12 family protein; Provisional
Probab=20.70 E-value=1.3e+03 Score=29.39 Aligned_cols=79 Identities=25% Similarity=0.355 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 308 ERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAA 387 (555)
Q Consensus 308 eRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaA 387 (555)
+|+.=+.-|..|..+|.--|-|-++ .+|.|-+|=-.+-|+.+|+-..+++...+. .|+..|=+-+--.
T Consensus 1170 ereker~~~~~enk~l~~qlrdtae-av~aagellvrl~eaeea~~~a~~r~~~~e-----------qe~~~~~k~~~kl 1237 (1320)
T PLN03188 1170 EREKERRYLRDENKSLQAQLRDTAE-AVQAAGELLVRLKEAEEALTVAQKRAMDAE-----------QEAAEAYKQIDKL 1237 (1320)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 7777778888888888888888776 456666788888899999887777665444 4444444445556
Q ss_pred HHHHHHHHhHH
Q 008742 388 QKKLEMETNQV 398 (555)
Q Consensus 388 QRkleeEk~rv 398 (555)
-||++.|..-+
T Consensus 1238 krkh~~e~~t~ 1248 (1320)
T PLN03188 1238 KRKHENEISTL 1248 (1320)
T ss_pred HHHHHHHHHHH
Confidence 67777665443
No 352
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.70 E-value=1.7e+02 Score=31.24 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc
Q 008742 485 IELKRRLGQLTDHLIQKQAQVFPL 508 (555)
Q Consensus 485 ~ELE~RLhQLTD~LIQKQTqLEAL 508 (555)
.+|..++.+|.+.|.+-+.+++.+
T Consensus 385 ~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 385 KELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555555444
No 353
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=20.68 E-value=2.5e+02 Score=26.63 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 008742 373 LETANADLARALAAAQKKLEMETNQVAELRQQTELK 408 (555)
Q Consensus 373 LE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~ 408 (555)
|+.||.-|=+||..+|-.|++.++-++-|++|++..
T Consensus 90 lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 90 LKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456788899999999999999999999999998753
No 354
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=20.64 E-value=8.8e+02 Score=24.44 Aligned_cols=37 Identities=32% Similarity=0.290 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHH
Q 008742 369 LLAKLETANADLARALAAAQKKLEMETNQV-AELRQQT 405 (555)
Q Consensus 369 RLaKLE~e~qeLAeSLAaAQRkleeEk~rv-aELqQQV 405 (555)
|..-++..+.+++.-...++..++.|+.++ .+|+.++
T Consensus 88 ~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v 125 (250)
T PRK14474 88 RQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQT 125 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555443 3444443
No 355
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.63 E-value=3.2e+02 Score=22.54 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhc
Q 008742 368 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (555)
Q Consensus 368 aRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~k 423 (555)
+|+..||...+=+-..+..--.-+..+-++++.|+.++ .-+..++.++.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l-------~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQL-------RLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhc
Confidence 56677776665555555555555555555555555444 44555555544
No 356
>PRK04325 hypothetical protein; Provisional
Probab=20.25 E-value=4.6e+02 Score=22.17 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHH---HHHHHHHHHHHHHH
Q 008742 451 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVE---IELKRRLGQLTDHL 498 (555)
Q Consensus 451 ~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE---~ELE~RLhQLTD~L 498 (555)
.+..+|..|+.+++-.+.-|+-.-..+ +.++ ..|++.|..|++.|
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv---~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATV---ARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666665555444 2223 56677777777665
No 357
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=20.24 E-value=8.4e+02 Score=24.02 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008742 373 LETANADLARALAAAQKKLEMETNQVAELRQQT 405 (555)
Q Consensus 373 LE~e~qeLAeSLAaAQRkleeEk~rvaELqQQV 405 (555)
|+.+....+..|..|++...+-....++.++++
T Consensus 82 Le~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L 114 (204)
T PRK09174 82 IETRRDRIAQDLDQAARLKQEADAAVAAYEQEL 114 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556555555444333333333333
No 358
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.20 E-value=4.7e+02 Score=24.11 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHhHH
Q 008742 385 AAAQKKLEMETNQVAELRQQTELKEVAHE 413 (555)
Q Consensus 385 AaAQRkleeEk~rvaELqQQVkl~e~~~E 413 (555)
++-++.+......++.|+..++..+..++
T Consensus 30 ~~LE~qL~~~~~~l~lLq~e~~~~e~~le 58 (160)
T PF13094_consen 30 RALERQLAANLHQLELLQEEIEKEEAALE 58 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443333
No 359
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=20.09 E-value=7.4e+02 Score=23.34 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHH
Q 008742 371 AKLETANADLARALAAAQKKLEMETNQV-AELRQQT 405 (555)
Q Consensus 371 aKLE~e~qeLAeSLAaAQRkleeEk~rv-aELqQQV 405 (555)
..+.....+++.-+..|+...+.++.++ .+|+.++
T Consensus 112 ~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i 147 (184)
T PRK13455 112 QAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRA 147 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566666666666665543 3344333
No 360
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=20.01 E-value=5e+02 Score=31.23 Aligned_cols=93 Identities=15% Similarity=0.063 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008742 383 ALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDK 462 (555)
Q Consensus 383 SLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~e 462 (555)
-+.+-||++.-|++|-+|++-++.=.+.......=.+.+.. .-++.....++.+++..-+.++.|+..+..--.+|+..
T Consensus 43 ~v~afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~-~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n 121 (829)
T KOG2189|consen 43 DVSAFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLD-ESPPAPPPREIIDLEEQLEKLESELRELNANKEALKAN 121 (829)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc-ccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 46788999999999999998887766655553333332222 11111122234444455555566666665555555555
Q ss_pred HHHHHHHHHHHhhh
Q 008742 463 AKKLEGNIEMTRKE 476 (555)
Q Consensus 463 a~KLEeEI~~TKkt 476 (555)
--.|.|..+..+++
T Consensus 122 ~~eL~E~~~vl~~t 135 (829)
T KOG2189|consen 122 YNELLELKYVLEKT 135 (829)
T ss_pred HHHHHHHHHHHHhh
Confidence 55555555555554
Done!