Query 008742
Match_columns 555
No_of_seqs 40 out of 42
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 10:40:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 97.3 0.00075 2.6E-08 75.9 10.7 38 486-523 1085-1122(1184)
2 3na7_A HP0958; flagellar bioge 97.3 0.025 8.6E-07 53.6 19.3 123 347-476 11-133 (256)
3 1i84_S Smooth muscle myosin he 97.2 0.0011 3.8E-08 74.5 11.1 59 365-423 910-968 (1184)
4 3oja_B Anopheles plasmodium-re 96.4 0.14 4.8E-06 51.8 17.3 114 304-421 456-569 (597)
5 3vkg_A Dynein heavy chain, cyt 96.1 0.32 1.1E-05 60.9 21.9 169 360-534 1937-2109(3245)
6 2dfs_A Myosin-5A; myosin-V, in 95.9 0.69 2.4E-05 52.6 21.7 71 444-524 974-1044(1080)
7 3vkg_A Dynein heavy chain, cyt 95.2 1.5 5.2E-05 55.2 22.7 38 304-341 1927-1964(3245)
8 2v71_A Nuclear distribution pr 95.1 1.2 4.1E-05 42.3 16.9 152 355-522 11-166 (189)
9 3na7_A HP0958; flagellar bioge 94.9 0.93 3.2E-05 43.0 15.8 42 436-477 100-141 (256)
10 2dfs_A Myosin-5A; myosin-V, in 94.0 2.2 7.5E-05 48.6 18.8 69 355-424 902-974 (1080)
11 3oja_B Anopheles plasmodium-re 93.9 0.44 1.5E-05 48.3 11.8 38 337-374 457-494 (597)
12 1x79_B RAB GTPase binding effe 89.7 3.2 0.00011 36.7 10.8 79 311-389 20-98 (112)
13 2b9c_A Striated-muscle alpha t 89.4 5.9 0.0002 35.8 12.6 118 365-498 21-145 (147)
14 2fxo_A Myosin heavy chain, car 87.5 14 0.00046 32.2 17.9 76 349-424 50-125 (129)
15 2v71_A Nuclear distribution pr 86.9 21 0.00073 33.8 18.6 83 338-420 58-140 (189)
16 3ghg_A Fibrinogen alpha chain; 85.3 9.4 0.00032 41.4 13.1 41 436-476 120-160 (562)
17 1f5n_A Interferon-induced guan 85.0 45 0.0015 35.8 18.6 111 364-476 462-582 (592)
18 3mq9_A Bone marrow stromal ant 80.9 23 0.00077 35.2 13.2 60 415-474 409-470 (471)
19 3ol1_A Vimentin; structural ge 78.7 8.2 0.00028 33.4 8.2 38 463-500 64-101 (119)
20 3o0z_A RHO-associated protein 78.7 44 0.0015 31.4 17.1 90 292-388 34-131 (168)
21 1fxk_A Prefoldin; archaeal pro 77.6 15 0.00051 29.8 9.0 95 378-472 4-104 (107)
22 3swk_A Vimentin; cytoskeleton, 76.2 12 0.00042 31.0 8.2 38 463-500 44-81 (86)
23 2jee_A YIIU; FTSZ, septum, coi 76.0 35 0.0012 28.8 11.2 56 367-422 5-60 (81)
24 3ghg_A Fibrinogen alpha chain; 75.7 18 0.00061 39.3 11.3 21 403-423 131-151 (562)
25 2zqm_A Prefoldin beta subunit 75.4 32 0.0011 28.2 11.7 100 374-473 5-110 (117)
26 3hnw_A Uncharacterized protein 74.1 13 0.00043 33.3 8.3 24 396-419 75-98 (138)
27 1l8d_A DNA double-strand break 74.0 36 0.0012 28.0 11.6 35 390-424 11-45 (112)
28 1deq_A Fibrinogen (alpha chain 73.9 91 0.0031 32.7 16.5 31 447-477 134-164 (390)
29 3haj_A Human pacsin2 F-BAR; pa 73.7 83 0.0028 32.1 18.0 80 326-406 89-174 (486)
30 3hnw_A Uncharacterized protein 72.4 45 0.0015 29.8 11.4 90 411-507 33-135 (138)
31 2ocy_A RAB guanine nucleotide 71.6 59 0.002 30.0 12.3 24 485-508 111-134 (154)
32 2i1j_A Moesin; FERM, coiled-co 68.1 9.7 0.00033 40.4 7.2 91 363-462 337-427 (575)
33 2efk_A CDC42-interacting prote 65.2 86 0.0029 28.9 21.9 79 327-408 78-156 (301)
34 2efl_A Formin-binding protein 64.2 88 0.003 28.7 21.4 77 326-406 84-161 (305)
35 2v66_B Nuclear distribution pr 62.6 59 0.002 28.6 9.9 29 396-424 3-31 (111)
36 4dk0_A Putative MACA; alpha-ha 61.7 21 0.00071 33.9 7.5 32 446-477 121-152 (369)
37 1m1j_C Fibrinogen gamma chain; 59.2 1.3E+02 0.0045 31.2 13.4 47 378-424 23-69 (409)
38 1ic2_A Tropomyosin alpha chain 57.1 75 0.0026 25.6 9.0 30 441-470 35-64 (81)
39 3edu_A Beta-I spectrin, spectr 54.9 1.1E+02 0.0039 27.0 13.2 71 434-506 141-211 (218)
40 3cve_A Homer protein homolog 1 51.9 76 0.0026 26.2 8.2 37 365-401 4-40 (72)
41 2efr_A General control protein 51.8 1.5E+02 0.005 27.3 19.3 22 403-424 56-77 (155)
42 3q8t_A Beclin-1; autophagy, AT 51.7 1.1E+02 0.0037 25.8 14.2 89 349-460 6-94 (96)
43 1d7m_A Cortexillin I; coiled-c 51.7 1.2E+02 0.0042 26.4 11.7 50 334-387 44-93 (101)
44 1cun_A Protein (alpha spectrin 50.8 1.2E+02 0.0041 26.1 18.6 65 434-506 140-209 (213)
45 3oja_A Leucine-rich immune mol 49.8 2.1E+02 0.0071 28.5 12.9 34 437-470 425-458 (487)
46 3a7p_A Autophagy protein 16; c 49.8 76 0.0026 29.5 8.8 61 401-470 66-126 (152)
47 3mq7_A Bone marrow stromal ant 48.4 1.6E+02 0.0053 26.7 13.0 86 352-456 17-108 (121)
48 3i00_A HIP-I, huntingtin-inter 48.1 1.2E+02 0.0042 26.7 9.6 69 308-380 12-80 (120)
49 3hhm_B NISH2 P85alpha; PI3KCA, 47.3 2.4E+02 0.0084 28.6 14.4 62 435-503 193-254 (373)
50 1u5p_A Spectrin alpha chain, b 47.1 1.4E+02 0.0049 25.9 15.7 67 432-506 141-212 (216)
51 3mov_A Lamin-B1; LMNB1, B-type 46.5 1.3E+02 0.0044 25.4 9.1 43 308-350 9-51 (95)
52 3fpp_A Macrolide-specific effl 46.2 53 0.0018 30.9 7.5 42 384-425 116-157 (341)
53 2e7s_A RAB guanine nucleotide 45.9 1.1E+02 0.0036 28.0 9.0 78 343-424 46-131 (135)
54 2x3v_A Syndapin I, protein kin 45.2 2.1E+02 0.0071 27.2 20.8 77 328-405 89-171 (337)
55 2v4h_A NF-kappa-B essential mo 43.9 1.7E+02 0.0059 25.9 11.6 23 442-464 85-107 (110)
56 3l4q_C Phosphatidylinositol 3- 43.3 2E+02 0.0067 26.9 10.6 61 436-503 85-145 (170)
57 4dk0_A Putative MACA; alpha-ha 43.2 2E+02 0.0067 27.2 10.9 74 401-474 82-156 (369)
58 2zqm_A Prefoldin beta subunit 42.8 1.4E+02 0.0047 24.4 9.0 42 389-430 6-47 (117)
59 3fpp_A Macrolide-specific effl 42.8 23 0.00078 33.4 4.4 34 444-477 118-151 (341)
60 3cvf_A Homer-3, homer protein 42.3 1.2E+02 0.004 25.4 8.1 38 364-401 9-46 (79)
61 1ic2_A Tropomyosin alpha chain 42.3 96 0.0033 24.9 7.4 42 436-477 9-50 (81)
62 3lbx_A Spectrin alpha chain, e 41.5 1.8E+02 0.006 25.3 11.9 69 352-421 90-159 (161)
63 1go4_E MAD1 (mitotic arrest de 41.4 58 0.002 28.3 6.3 25 397-421 13-37 (100)
64 3ni0_A Bone marrow stromal ant 41.1 1.8E+02 0.0063 25.4 10.6 34 389-422 53-86 (99)
65 1deq_A Fibrinogen (alpha chain 38.2 3.8E+02 0.013 28.2 15.1 21 442-462 174-194 (390)
66 1m1j_B Fibrinogen beta chain; 37.3 2.7E+02 0.0094 29.5 11.8 11 381-391 88-98 (464)
67 3kin_B Kinesin heavy chain; mo 35.8 51 0.0017 28.5 5.1 33 443-475 85-117 (117)
68 3o0z_A RHO-associated protein 35.8 2.8E+02 0.0096 26.0 16.8 10 365-374 27-36 (168)
69 3he4_A Synzip6; heterodimeric 35.3 38 0.0013 26.5 3.8 25 309-333 22-46 (56)
70 1nlw_A MAD protein, MAX dimeri 34.9 63 0.0022 26.3 5.3 23 452-474 45-67 (80)
71 3pe0_A Plectin; cytoskeleton, 34.4 99 0.0034 29.7 7.4 26 396-421 87-112 (283)
72 3abh_A Pacsin2, protein kinase 34.1 3E+02 0.01 25.8 19.9 74 330-404 100-179 (312)
73 2e7s_A RAB guanine nucleotide 32.8 31 0.0011 31.4 3.4 24 485-508 99-122 (135)
74 3i2w_A Syndapin, LD46328P; EFC 32.5 3E+02 0.01 25.4 14.6 27 329-355 78-104 (290)
75 3u1c_A Tropomyosin alpha-1 cha 32.1 2.3E+02 0.0077 23.8 11.0 43 435-477 32-74 (101)
76 1l8d_A DNA double-strand break 31.5 2.1E+02 0.0073 23.3 9.8 22 395-416 23-44 (112)
77 2xdj_A Uncharacterized protein 31.4 2.2E+02 0.0075 23.6 8.1 54 368-421 6-59 (83)
78 2efr_A General control protein 30.6 3.2E+02 0.011 25.1 19.7 51 365-415 67-117 (155)
79 3u59_A Tropomyosin beta chain; 30.0 2.4E+02 0.0082 23.4 10.9 20 446-465 43-62 (101)
80 2no2_A HIP-I, huntingtin-inter 30.0 2.7E+02 0.0091 24.0 12.1 42 385-426 43-84 (107)
81 1go4_E MAD1 (mitotic arrest de 29.5 1.1E+02 0.0038 26.6 6.1 27 393-419 16-42 (100)
82 4e61_A Protein BIM1; EB1-like 29.3 85 0.0029 27.6 5.5 36 383-418 5-40 (106)
83 3aco_A Pacsin2, protein kinase 28.1 4.1E+02 0.014 25.5 15.8 20 333-352 103-122 (350)
84 2ocy_A RAB guanine nucleotide 27.7 3.7E+02 0.012 24.8 18.1 81 340-424 55-143 (154)
85 1u4q_A Spectrin alpha chain, b 27.6 3.5E+02 0.012 24.6 14.7 64 435-506 144-212 (322)
86 4dyl_A Tyrosine-protein kinase 27.6 2.7E+02 0.0093 27.8 9.5 74 386-459 306-385 (406)
87 3f31_A Spectrin alpha chain, b 26.6 2.9E+02 0.01 23.4 12.5 68 352-420 80-148 (149)
88 2yy0_A C-MYC-binding protein; 26.4 83 0.0028 24.2 4.3 28 395-422 25-52 (53)
89 1gd2_E Transcription factor PA 26.0 1.1E+02 0.0037 24.8 5.2 28 386-413 18-46 (70)
90 2f1m_A Acriflavine resistance 25.6 2.5E+02 0.0086 25.5 8.2 26 446-471 104-129 (277)
91 2xnx_M M protein, M1-BC1; cell 25.5 3.9E+02 0.013 24.7 9.3 35 438-472 78-112 (146)
92 3oja_A Leucine-rich immune mol 25.0 5.2E+02 0.018 25.6 17.3 30 315-344 364-393 (487)
93 3ra3_A P1C; coiled coil domain 24.3 86 0.0029 21.8 3.6 26 435-460 2-27 (28)
94 1bf5_A Signal transducer and a 24.3 7.3E+02 0.025 27.1 16.6 65 425-501 114-180 (575)
95 1dip_A Delta-sleep-inducing pe 24.0 42 0.0015 28.3 2.5 28 437-464 12-39 (78)
96 3i00_A HIP-I, huntingtin-inter 24.0 2.2E+02 0.0074 25.1 7.1 25 397-421 16-40 (120)
97 1grj_A GREA protein; transcrip 23.6 2.6E+02 0.0089 24.8 7.7 55 446-500 8-71 (158)
98 3cvf_A Homer-3, homer protein 23.3 2.3E+02 0.0079 23.6 6.7 21 435-455 36-56 (79)
99 1jcd_A Major outer membrane li 22.9 1.7E+02 0.0056 22.8 5.4 33 444-476 8-40 (52)
100 3mq9_A Bone marrow stromal ant 22.8 5.6E+02 0.019 25.3 15.8 32 45-76 86-123 (471)
101 2jee_A YIIU; FTSZ, septum, coi 22.8 3E+02 0.01 23.2 7.4 18 441-458 28-45 (81)
102 2v66_B Nuclear distribution pr 22.6 3.9E+02 0.013 23.4 15.5 55 352-406 40-101 (111)
103 1gk4_A Vimentin; intermediate 22.5 2.3E+02 0.0078 23.0 6.5 65 404-487 2-70 (84)
104 1g8x_A Myosin II heavy chain f 20.6 2.3E+02 0.0078 32.4 8.2 117 304-424 865-995 (1010)
105 3nmd_A CGMP dependent protein 20.4 2.2E+02 0.0075 23.6 6.0 49 428-476 14-62 (72)
106 1u4q_A Spectrin alpha chain, b 20.0 5E+02 0.017 23.6 26.4 147 351-506 143-318 (322)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.31 E-value=0.00075 Score=75.88 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCccchhHHHHH
Q 008742 486 ELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRML 523 (555)
Q Consensus 486 ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~QLERLE 523 (555)
+|+..+..+...|-+-+.+++.+..+...+.-++.+|+
T Consensus 1085 ~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le 1122 (1184)
T 1i84_S 1085 ELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE 1122 (1184)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444344433343333
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.28 E-value=0.025 Score=53.64 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccc
Q 008742 347 ETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG 426 (555)
Q Consensus 347 ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQka 426 (555)
=-+|.++.+.......+-+.-..+..|+.+...+...+..++-.+.+-...+..+...+...+.-...++.++..-+
T Consensus 11 ~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~--- 87 (256)
T 3na7_A 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK--- 87 (256)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---
Confidence 34566777777777777777777777777777777777777777766666666666666666666666665553322
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008742 427 IYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 476 (555)
Q Consensus 427 s~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt 476 (555)
.-.++..+.+|.+.++..+..+.+.|..+..+...+++++......
T Consensus 88 ----~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~ 133 (256)
T 3na7_A 88 ----SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKE 133 (256)
T ss_dssp ----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1225556666666666666666666666655555555555444443
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.24 E-value=0.0011 Score=74.52 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhc
Q 008742 365 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (555)
Q Consensus 365 EalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~k 423 (555)
++-.++..++.+...|.+.+...+..+++......+++.+++.++..++.++.++.++.
T Consensus 910 ~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele 968 (1184)
T 1i84_S 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666666666666666665555555555555555544443
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.36 E-value=0.14 Score=51.85 Aligned_cols=114 Identities=18% Similarity=0.102 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 008742 304 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARA 383 (555)
Q Consensus 304 aaIkeRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeS 383 (555)
+.|.+.+..|..|+.+....++.+......-......++ ..-+++....+....+....-+|.+.++.+.+.+-++
T Consensus 456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 531 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR----LPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTE 531 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC----ccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 456677777788877777766666554443222222222 0000122222333334444444555555555554444
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhh
Q 008742 384 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (555)
Q Consensus 384 LAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d 421 (555)
+..-+..++.-..++.+++.+.+..+.....++|++++
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~ 569 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSL 569 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 44444444444444444444444444444444444443
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.13 E-value=0.32 Score=60.92 Aligned_cols=169 Identities=15% Similarity=0.097 Sum_probs=87.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhh
Q 008742 360 NNTRMEALQLLAKLETANADLARAL---AAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASK 436 (555)
Q Consensus 360 ~~TQmEalaRLaKLE~e~qeLAeSL---AaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~ 436 (555)
..||.|..+-..+|+..+++.-+.| ...+..++..+..|.+.+.+++.....+...|.+...==..+-|+ .
T Consensus 1937 ~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa------~ 2010 (3245)
T 3vkg_A 1937 KDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPT------G 2010 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------C
Confidence 3444444444445544444433333 223334444445555555555444444444443332211112222 2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccc
Q 008742 437 GVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTT 516 (555)
Q Consensus 437 ~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv 516 (555)
=++.+.+.+++++..++.++...+.+.+.+++.|+..+......+.--..|+..+......|..=+.-+.+|++||..-.
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence 23334444555555555555555555555555555555554333332256777777777777777888899999998877
Q ss_pred hhHHHHH-HHHhhhhcccc
Q 008742 517 IPVMRML-SLAFFHMDGII 534 (555)
Q Consensus 517 ~QLERLE-~~~~fh~~~~~ 534 (555)
-++..|+ ++...--|-++
T Consensus 2091 ~~~~~l~~~~~~L~GD~LL 2109 (3245)
T 3vkg_A 2091 QQSENFNTQMSTVVGDVVL 2109 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHH
Confidence 7777776 45444444333
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.91 E-value=0.69 Score=52.57 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccchhHHHHH
Q 008742 444 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNFLPGRTTIPVMRML 523 (555)
Q Consensus 444 ~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALSTEKnSLv~QLERLE 523 (555)
.+..|...+..++.+|+.+..++++++..+.++. .+||.++.++.+.| |.+|-.|..|++.|.-|+..||
T Consensus 974 ~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~-------~~lee~~~~~~~~L---~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 974 MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK-------KTIEEWADKYKHET---EQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666665555443 45677777777654 4667777788888888888887
Q ss_pred H
Q 008742 524 S 524 (555)
Q Consensus 524 ~ 524 (555)
+
T Consensus 1044 ~ 1044 (1080)
T 2dfs_A 1044 R 1044 (1080)
T ss_dssp H
T ss_pred H
Confidence 3
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.20 E-value=1.5 Score=55.17 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHH
Q 008742 304 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASEL 341 (555)
Q Consensus 304 aaIkeRenmVa~LE~EKesLeKiL~er~kQqaqEassL 341 (555)
.-|.+...-|+.|+.|...++..|++-.++...-+..+
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55668888999999999888888887655433333333
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.10 E-value=1.2 Score=42.28 Aligned_cols=152 Identities=12% Similarity=0.098 Sum_probs=82.1
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhh
Q 008742 355 EKQRHNNTRMEALQLLAKLETANADLARALAAA----QKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLK 430 (555)
Q Consensus 355 Eqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaA----QRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ 430 (555)
|-..|+..=.++-.+...|+.+-.+.-++=.-. +.-+..--++..+|+.++..++..++++|-++.....-..
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~--- 87 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY--- 87 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 344444444444444444554444433332222 2333333467778888888888888888877654332110
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 008742 431 RLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVFPLNF 510 (555)
Q Consensus 431 ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLEALST 510 (555)
...-.+..++..+.....+|+....+||..-.-.-+..-+.+++-.-++.+|++.-+..+==++-|+
T Consensus 88 ---------~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~---- 154 (189)
T 2v71_A 88 ---------KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD---- 154 (189)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 0122234455555555566666666655444333333333466677889999887666655555555
Q ss_pred CCCccchhHHHH
Q 008742 511 LPGRTTIPVMRM 522 (555)
Q Consensus 511 EKnSLv~QLERL 522 (555)
||-.|...+.||
T Consensus 155 EKe~l~~~~QRL 166 (189)
T 2v71_A 155 EKESLLVSVQRL 166 (189)
T ss_dssp HHHHHHCCC---
T ss_pred HHHHHHHHHHHH
Confidence 677776555555
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.90 E-value=0.93 Score=42.95 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=22.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 436 KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 436 ~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
..++.+...++.++..++.+|+.++.....+++.+...+..+
T Consensus 100 e~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 100 DIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555544444
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.03 E-value=2.2 Score=48.59 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=13.6
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh----HHHhHHHHhhhhhhhcc
Q 008742 355 EKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTEL----KEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 355 Eqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl----~e~~~EslKQeL~d~kQ 424 (555)
.+..+..++.|+- ...+|...+..|-.-|...|++++++.++..+|++++.. +...+..|+..+.+++.
T Consensus 902 aRr~~~~Lk~ear-~~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 902 AKRELKKLKIEAR-SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp HHHHTTTC------------------------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3334455555441 223444456777777777788888888888877776543 33344455555555554
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.90 E-value=0.44 Score=48.29 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 008742 337 EASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLE 374 (555)
Q Consensus 337 EassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE 374 (555)
+...+++.+-...++..+.....+.++++.-++...++
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 44445544444444455555555666666555555544
No 12
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=89.74 E-value=3.2 Score=36.68 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=66.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 311 NMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQK 389 (555)
Q Consensus 311 nmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQR 389 (555)
..+.++.+++..|+.-+.+.....+.+.+.|+.+.-.+.+.|..=++.|.+++.++..++++|-..+..+..=|.+.|+
T Consensus 20 ~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~ 98 (112)
T 1x79_B 20 DQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQK 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677788999999999999999999999999999999999999999999999999999999998888887777766664
No 13
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=89.41 E-value=5.9 Score=35.84 Aligned_cols=118 Identities=15% Similarity=0.221 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHH
Q 008742 365 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREI 444 (555)
Q Consensus 365 EalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~ 444 (555)
.+..+|...+...-+--++....+-.....-.++..|..|++-++..+++.-++......+. .+
T Consensus 21 ~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl----------------~~ 84 (147)
T 2b9c_A 21 TALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKL----------------VI 84 (147)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------------HH
Confidence 44555555555555555555555555555556777888888877777776655543322211 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------ccCchhHHHHHHHHHHHHHHHH
Q 008742 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE-------IEDPTEVEIELKRRLGQLTDHL 498 (555)
Q Consensus 445 ~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt-------l~~~TssE~ELE~RLhQLTD~L 498 (555)
+..++.....+......+...|+++|..+-+. -..++.-|..++.+++.||+.|
T Consensus 85 ~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~kL 145 (147)
T 2b9c_A 85 IESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLV 145 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 22333333344444444444455555544444 3444455888999999988754
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.55 E-value=14 Score=32.21 Aligned_cols=76 Identities=20% Similarity=0.195 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcc
Q 008742 349 MDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 349 ~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQ 424 (555)
...+....+.....-.++=+|..+|-...++|-.-|.-++..++++..+.++|...-+.++..|.+|+..|.++..
T Consensus 50 k~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 50 KNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555556788899999999999999999999999999999999999999999999999999888653
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.90 E-value=21 Score=33.81 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhh
Q 008742 338 ASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 417 (555)
Q Consensus 338 assLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQ 417 (555)
...|+.+....-.+++.=+.+|.+.+.|+..-.+.|+.+...|-......+..+-+=-..-++|.-+.....++++++..
T Consensus 58 ~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~ 137 (189)
T 2v71_A 58 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQ 137 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHH
Confidence 34455555444445555566677777777777777777777666665555555544444555565566666666665555
Q ss_pred hhh
Q 008742 418 RNS 420 (555)
Q Consensus 418 eL~ 420 (555)
++-
T Consensus 138 kln 140 (189)
T 2v71_A 138 RLN 140 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.31 E-value=9.4 Score=41.41 Aligned_cols=41 Identities=10% Similarity=0.068 Sum_probs=34.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008742 436 KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 476 (555)
Q Consensus 436 ~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt 476 (555)
..++.+.+.+-.-|+.|+.-|..++.+++|||.+|.+..+.
T Consensus 120 qyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 120 EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666667888899999999999999999999997776
No 17
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=84.99 E-value=45 Score=35.77 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhh-hhhhHH
Q 008742 364 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASK-GVEFER 442 (555)
Q Consensus 364 mEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~-~~r~Er 442 (555)
.+|+.=...++...-..=.+|+..++.+++|..+...++++.+.++-.+..+.|.+..- ..+.-+.+.+|. .++.||
T Consensus 462 ~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~--~~~~~e~~~ql~~kme~~~ 539 (592)
T 1f5n_A 462 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK--ERSYQEHLKQLTEKMENDR 539 (592)
T ss_dssp HHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 55655555555555555567788999999999999988888888877666665554432 233444455555 367777
Q ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhh
Q 008742 443 EILEAEYTFIADKIIQ---------LEDKAKKLEGNIEMTRKE 476 (555)
Q Consensus 443 E~~reE~q~l~~kI~q---------Lq~ea~KLEeEI~~TKkt 476 (555)
+.+.+|++.+...=-+ ++.++..|+.+|...++.
T Consensus 540 ~~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 540 VQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777655442111 333455566666666655
No 18
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=80.87 E-value=23 Score=35.22 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=32.2
Q ss_pred Hhhhhhhhcccchhhhh-hhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008742 415 LSQRNSNTHQTGIYLKR-LAASK-GVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 474 (555)
Q Consensus 415 lKQeL~d~kQkas~l~q-l~eL~-~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TK 474 (555)
++-.+.+.+..++..|. +..|. .++-++-....-++.+.++|-.|..+.+.++++|++.|
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 409 AQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333444434444332 33433 34445555555666666666666666666777776655
No 19
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=78.71 E-value=8.2 Score=33.43 Aligned_cols=38 Identities=13% Similarity=0.424 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH
Q 008742 463 AKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQ 500 (555)
Q Consensus 463 a~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQ 500 (555)
.+.+|.+|...|+++..-|-.-++||+++..|+|-|.-
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578999999999988888889999999999997653
No 20
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=78.71 E-value=44 Score=31.36 Aligned_cols=90 Identities=17% Similarity=0.123 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhh--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHhHhhH
Q 008742 292 KILAEKAAAKAG--DAIKERENMVARLEGEKQSLEKILEERAKQQVKE------ASELQTSMMETMDAFELEKQRHNNTR 363 (555)
Q Consensus 292 ~~laE~~aAKaa--aaIkeRenmVa~LE~EKesLeKiL~er~kQqaqE------assLQ~~m~ET~QalerEqe~h~~TQ 363 (555)
+..+|.-.+.+. +.+++=..++..|+..+..|++.+..---+=.+| ++++...|-.-++.|..|-.+-
T Consensus 34 K~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~---- 109 (168)
T 3o0z_A 34 KSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHL---- 109 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 467777766666 4555666999999999999999886543322222 3444443333344443333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 364 MEALQLLAKLETANADLARALAAAQ 388 (555)
Q Consensus 364 mEalaRLaKLE~e~qeLAeSLAaAQ 388 (555)
-.|+.+++.++..|.+-|..-+
T Consensus 110 ---k~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 110 ---KHNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Confidence 2345555555555554444433
No 21
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=77.58 E-value=15 Score=29.82 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhh---hcccch-hh--hhhhhhhhhhhHHHHHHHHHHH
Q 008742 378 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN---THQTGI-YL--KRLAASKGVEFEREILEAEYTF 451 (555)
Q Consensus 378 qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d---~kQkas-~l--~ql~eL~~~r~ErE~~reE~q~ 451 (555)
|.+...+...+..+..=..+...|..+..-.+.+++++..==.| |+..|. .+ +.-+....+....+.+..++..
T Consensus 4 Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~ 83 (107)
T 1fxk_A 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKT 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555566666666555555544321111 333332 11 1123455666677777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008742 452 IADKIIQLEDKAKKLEGNIEM 472 (555)
Q Consensus 452 l~~kI~qLq~ea~KLEeEI~~ 472 (555)
+..++..++.+..+++..++.
T Consensus 84 le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 84 IERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877777764
No 22
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=76.23 E-value=12 Score=31.00 Aligned_cols=38 Identities=13% Similarity=0.424 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH
Q 008742 463 AKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQ 500 (555)
Q Consensus 463 a~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQ 500 (555)
.+..|.+|...|+++..-|-.=++||.++..|+|-|..
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44589999999999988887789999999999998753
No 23
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=75.96 E-value=35 Score=28.78 Aligned_cols=56 Identities=21% Similarity=0.282 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhh
Q 008742 367 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (555)
Q Consensus 367 laRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~ 422 (555)
++-+.+||+..+.+-..++.-|-.+++-+.+-..|.+++..+....+.+.++...+
T Consensus 5 ~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qL 60 (81)
T 2jee_A 5 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 36789999999999999999999999888888888888888777777666655433
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=75.70 E-value=18 Score=39.29 Aligned_cols=21 Identities=10% Similarity=-0.048 Sum_probs=13.9
Q ss_pred HHHHhHHHhHHHHhhhhhhhc
Q 008742 403 QQTELKEVAHEELSQRNSNTH 423 (555)
Q Consensus 403 QQVkl~e~~~EslKQeL~d~k 423 (555)
+++..++..++++..+|++++
T Consensus 131 snIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777765
No 25
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=75.41 E-value=32 Score=28.17 Aligned_cols=100 Identities=17% Similarity=0.210 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhh---hcccch-hhh--hhhhhhhhhhHHHHHHH
Q 008742 374 ETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN---THQTGI-YLK--RLAASKGVEFEREILEA 447 (555)
Q Consensus 374 E~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d---~kQkas-~l~--ql~eL~~~r~ErE~~re 447 (555)
..+-+++...+...+..+..=..+...|..+..-.+.+++++..==.| |+..|. .+. .-+....+....+.+..
T Consensus 5 ~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~ 84 (117)
T 2zqm_A 5 PPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEV 84 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666666666666655421111 322222 111 12345567777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 448 EYTFIADKIIQLEDKAKKLEGNIEMT 473 (555)
Q Consensus 448 E~q~l~~kI~qLq~ea~KLEeEI~~T 473 (555)
++..+..++..++.+..+++..++.+
T Consensus 85 ~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 85 RLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888877764
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.08 E-value=13 Score=33.32 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHhHHHhHHHHhhhh
Q 008742 396 NQVAELRQQTELKEVAHEELSQRN 419 (555)
Q Consensus 396 ~rvaELqQQVkl~e~~~EslKQeL 419 (555)
.+.+.|+++++-++-...+||.+|
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el 98 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHEL 98 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555443
No 27
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=74.01 E-value=36 Score=28.02 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=18.6
Q ss_pred HHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcc
Q 008742 390 KLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 390 kleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQ 424 (555)
.+++-..+..+|+......+...+.+++.+..+..
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444555555555555555566666655554
No 28
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=73.94 E-value=91 Score=32.67 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 447 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 447 eE~q~l~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
..|+.|+.-|..+..+++|||.+|+.-++.-
T Consensus 134 ~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C 164 (390)
T 1deq_A 134 QRINLLQKNVRDQLVDMKRLEVDIDIKIRSC 164 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3778888888889999999999998877764
No 29
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=73.74 E-value=83 Score=32.12 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=40.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008742 326 ILEERAKQQVKEASELQTSMMETMDAFELEKQR------HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVA 399 (555)
Q Consensus 326 iL~er~kQqaqEassLQ~~m~ET~QalerEqe~------h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rva 399 (555)
.++..+..+.+-+..|++.+++-+..+..|... |+. +-++..=..++....+..-..|..+.++|...-+.+.
T Consensus 89 e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~ke-rK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e 167 (486)
T 3haj_A 89 EAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKE-TKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEK 167 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555777777777666666555311 111 2222222334444445555556666666665555555
Q ss_pred HHHHHHH
Q 008742 400 ELRQQTE 406 (555)
Q Consensus 400 ELqQQVk 406 (555)
.++++..
T Consensus 168 ~a~~~~~ 174 (486)
T 3haj_A 168 LAISREA 174 (486)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=72.43 E-value=45 Score=29.78 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=48.4
Q ss_pred hHHHHhhhhhhhccc--chh-----------hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 411 AHEELSQRNSNTHQT--GIY-----------LKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 411 ~~EslKQeL~d~kQk--as~-----------l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
....+.+++..+++. .+. +|-.+++-.++.+.+.+++++..+...|..|+.+...++..++-.++.+
T Consensus 33 vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~ 112 (138)
T 3hnw_A 33 VASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEI 112 (138)
T ss_dssp HHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666644 321 2222344444444444454444444444444444444444444444433
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 008742 478 EDPTEVEIELKRRLGQLTDHLIQKQAQVFP 507 (555)
Q Consensus 478 ~~~TssE~ELE~RLhQLTD~LIQKQTqLEA 507 (555)
.+|..++..|...++.-+|-++.
T Consensus 113 -------~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 113 -------KELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777888888777777776653
No 31
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.56 E-value=59 Score=30.01 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc
Q 008742 485 IELKRRLGQLTDHLIQKQAQVFPL 508 (555)
Q Consensus 485 ~ELE~RLhQLTD~LIQKQTqLEAL 508 (555)
..+|.|..+|-..|--|.+.|++|
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999998888888764
No 32
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=68.13 E-value=9.7 Score=40.45 Aligned_cols=91 Identities=20% Similarity=0.220 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHH
Q 008742 363 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFER 442 (555)
Q Consensus 363 QmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~Er 442 (555)
+.|.+.|+..+|.+..-.-++|..+ ...+..|.++.+.++...+.|-++.....+...-+.. +...-..|+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~--~~~~~~~e~ 407 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEA-------QDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEE--TKNMEAAER 407 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHC---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHH
Confidence 4566677777776655555555444 4455566666666666666555554443332211110 001112345
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008742 443 EILEAEYTFIADKIIQLEDK 462 (555)
Q Consensus 443 E~~reE~q~l~~kI~qLq~e 462 (555)
+.+.++++..+..|..|..+
T Consensus 408 ~~l~~~~~~~~~~~~~~~~~ 427 (575)
T 2i1j_A 408 QKLEDEIRAKQEEVSRIQQE 427 (575)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444
No 33
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=65.15 E-value=86 Score=28.89 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=48.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008742 327 LEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTE 406 (555)
Q Consensus 327 L~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVk 406 (555)
++..++.+.+-+..|++.+.+-+..+..++.. .+-....=..+++.+.+..-..|..+.++|+..-..+..++++..
T Consensus 78 ~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~---~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~ 154 (301)
T 2efk_A 78 VNDFAGQRELVAENLSVRVCLELTKYSQEMKQ---ERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAE 154 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555677777777777766555444 223333344556666677777777778888777776666666554
Q ss_pred hH
Q 008742 407 LK 408 (555)
Q Consensus 407 l~ 408 (555)
.+
T Consensus 155 ~a 156 (301)
T 2efk_A 155 RL 156 (301)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 34
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=64.20 E-value=88 Score=28.70 Aligned_cols=77 Identities=10% Similarity=0.155 Sum_probs=48.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008742 326 ILEERAKQQVKEASELQTSMMETMDAFELEKQ-RHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQ 404 (555)
Q Consensus 326 iL~er~kQqaqEassLQ~~m~ET~QalerEqe-~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQ 404 (555)
.++..++.+.+=+..|++.+.+-+..+..+++ .++....+ ..+++.+.+..-..|..+.++|...-+.+..++++
T Consensus 84 ~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~----~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~ 159 (305)
T 2efl_A 84 EMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHD----GRKAQQHIETCWKQLESSKRRFERDCKEADRAQQY 159 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555567778888887777766655 23333322 24566666777777777888888777777777666
Q ss_pred HH
Q 008742 405 TE 406 (555)
Q Consensus 405 Vk 406 (555)
..
T Consensus 160 ~~ 161 (305)
T 2efl_A 160 FE 161 (305)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 35
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=62.55 E-value=59 Score=28.65 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhHHHhHHHHhhhhhhhcc
Q 008742 396 NQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 396 ~rvaELqQQVkl~e~~~EslKQeL~d~kQ 424 (555)
++..+|+.++..++..++++|-++...+.
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~ 31 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYA 31 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999988766443
No 36
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=61.68 E-value=21 Score=33.95 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 446 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 446 reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
+..+..+..++..++.+...++.++..++..+
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l 152 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAETNL 152 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444445555555555555555555443
No 37
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=59.22 E-value=1.3e+02 Score=31.21 Aligned_cols=47 Identities=17% Similarity=0.034 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcc
Q 008742 378 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 378 qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQ 424 (555)
+.+|..|-.-|+.+......+..+-++|.-+......|.+.+++.-.
T Consensus 23 C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~ 69 (409)
T 1m1j_C 23 CGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYP 69 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999999999999643
No 38
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=57.15 E-value=75 Score=25.58 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 441 EREILEAEYTFIADKIIQLEDKAKKLEGNI 470 (555)
Q Consensus 441 ErE~~reE~q~l~~kI~qLq~ea~KLEeEI 470 (555)
..+...+++..++-+|.+|++++.+.++.+
T Consensus 35 ~~~~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 35 RSKQLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555444444443
No 39
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=54.87 E-value=1.1e+02 Score=26.95 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=34.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 008742 434 ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVF 506 (555)
Q Consensus 434 eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQTqLE 506 (555)
.++.+....+.++.++.....+|.+|+..+.+|-..-.-. ....-.....+|..+-..|....-+...+|+
T Consensus 141 ~v~~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L~~~~~~~--~a~~i~~~~~~l~~~W~~L~~~~~~R~~~L~ 211 (218)
T 3edu_A 141 TAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGE--KAEAIQNKEQEVSAAWQALLDACAGRRTQLV 211 (218)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666778888889999999999888875321100 0000112234555555555555444444443
No 40
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=51.90 E-value=76 Score=26.16 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008742 365 EALQLLAKLETANADLARALAAAQKKLEMETNQVAEL 401 (555)
Q Consensus 365 EalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaEL 401 (555)
++.+|+-.+|.+|++|=+.|..+|..+++-+-+-.-+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~ 40 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAF 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888999999999888888888877766443333
No 41
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=51.75 E-value=1.5e+02 Score=27.32 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=14.1
Q ss_pred HHHHhHHHhHHHHhhhhhhhcc
Q 008742 403 QQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 403 QQVkl~e~~~EslKQeL~d~kQ 424 (555)
..+++++++.+.+.++-..|+.
T Consensus 56 ~nlKsLE~seekasqrEd~yEe 77 (155)
T 2efr_A 56 NNLKSLEAQAEKYSQKEDKYEE 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhhHHHHHHHHHHH
Confidence 4566677777766666665553
No 42
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=51.74 E-value=1.1e+02 Score=25.78 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchh
Q 008742 349 MDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY 428 (555)
Q Consensus 349 ~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~ 428 (555)
+.+++.|.+.-..-..+++..|.+||.+...++..|.+.+.....-...-.. |=++..+++
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~--------------~w~eyn~~~----- 66 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQ--------------YQREYSEFK----- 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHH--------------HHHHHHHHH-----
Confidence 4566777777777788899999999999999998888776543322211111 111111110
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008742 429 LKRLAASKGVEFEREILEAEYTFIADKIIQLE 460 (555)
Q Consensus 429 l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq 460 (555)
-++-.+..|+.-+...|.....++..|+
T Consensus 67 ----~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 67 ----RQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1334555566677777777777777765
No 43
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=51.66 E-value=1.2e+02 Score=26.42 Aligned_cols=50 Identities=42% Similarity=0.413 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 334 QVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAA 387 (555)
Q Consensus 334 qaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaA 387 (555)
-.+-...||....+++.-++.|+ -++|+.-.||+|.|...+-|-=.|+-+
T Consensus 44 R~~~i~el~akidd~Lk~l~~Ek----lAkldLE~RLsKtEKDkAiLELkLaE~ 93 (101)
T 1d7m_A 44 REKRLRELEAKLDETLKNLELEK----LARMELEARLAKTEKDRAILELKLAEA 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHH----HHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 33447889999999999988875 578999999999999988776555544
No 44
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=50.84 E-value=1.2e+02 Score=26.09 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=41.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch-----hHHHHHHHHHHHHHHHHHHHhhhhc
Q 008742 434 ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT-----EVEIELKRRLGQLTDHLIQKQAQVF 506 (555)
Q Consensus 434 eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~T-----ssE~ELE~RLhQLTD~LIQKQTqLE 506 (555)
.++.+--+.+.+..++......|.++...+..|-.. .+|. ..-.+|..|+..|....-+.+..|+
T Consensus 140 ~v~~ll~~h~~~~~el~~~~~~i~~l~~~~~~L~~~--------~~~~~~~I~~~~~~l~~~w~~l~~~~~~R~~~L~ 209 (213)
T 1cun_A 140 AIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK--------NNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLD 209 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455556666666667777777766665332 1222 1236788899999988888888776
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.77 E-value=2.1e+02 Score=28.49 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 437 GVEFEREILEAEYTFIADKIIQLEDKAKKLEGNI 470 (555)
Q Consensus 437 ~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI 470 (555)
+.+.|++.++++...+..+|.+|+.+.++++-+|
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLN 458 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhh
Confidence 4555666666666666666666665544444333
No 46
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=49.76 E-value=76 Score=29.47 Aligned_cols=61 Identities=13% Similarity=-0.027 Sum_probs=30.7
Q ss_pred HHHHHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 401 LRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNI 470 (555)
Q Consensus 401 LqQQVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI 470 (555)
+.+.+..++..+..+++++.+++. ++++-..-.+.+..||..|+.+...++.+.++++.|-
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLee---------el~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKE---------VIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666655442 2222222233445555555555555555555555443
No 47
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.40 E-value=1.6e+02 Score=26.65 Aligned_cols=86 Identities=21% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHhHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhccc
Q 008742 352 FELEKQRHNNTR------MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT 425 (555)
Q Consensus 352 lerEqe~h~~TQ------mEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQk 425 (555)
|.-|++++|.|+ ..+-+=|..-|+....--..+....--|+.++.+. +.+|+-++-....|+|
T Consensus 17 LrAq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq-------- 85 (121)
T 3mq7_A 17 LRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNH-------- 85 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH--------
Q ss_pred chhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 008742 426 GIYLKRLAASKGVEFEREILEAEYTFIADKI 456 (555)
Q Consensus 426 as~l~ql~eL~~~r~ErE~~reE~q~l~~kI 456 (555)
.|+....|.|.+|.+.+.+..+|
T Consensus 86 --------~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 86 --------KLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHhhchhhhhHh
No 48
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=48.07 E-value=1.2e+02 Score=26.66 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 008742 308 ERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADL 380 (555)
Q Consensus 308 eRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeL 380 (555)
.|..+++.|..|.++|-.-++.-.-.+......|..+..+ |+-|.+-++.++.+++.=...|.++...|
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~----Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSE----LEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777776666666655555556666555544 34444444555666665555566555554
No 49
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=47.27 E-value=2.4e+02 Score=28.61 Aligned_cols=62 Identities=23% Similarity=0.377 Sum_probs=48.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhh
Q 008742 435 SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQA 503 (555)
Q Consensus 435 L~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQT 503 (555)
.++-.||...+.+-+..|..+|..++...++|+.+|..-+.. ..|||+++..|.-.|+|--.
T Consensus 193 ~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 193 REGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAE-------YREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp TTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhccChHHHHHHH
Confidence 344567888888999999999999999999999987664433 47899999988888887443
No 50
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=47.13 E-value=1.4e+02 Score=25.86 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=45.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch--hHH---HHHHHHHHHHHHHHHHHhhhhc
Q 008742 432 LAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT--EVE---IELKRRLGQLTDHLIQKQAQVF 506 (555)
Q Consensus 432 l~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~T--ssE---~ELE~RLhQLTD~LIQKQTqLE 506 (555)
+..++.+....+.+.+++......|.++...+.+|-. ..++. ..+ .+|..|...|.+.....+..|+
T Consensus 141 l~~v~~ll~kh~~~~~el~~~~~~i~~l~~~g~~L~~--------~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~ 212 (216)
T 1u5p_A 141 LTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSD--------DNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLE 212 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------TCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666777777777777777777777632 12333 222 5788899999999888888876
No 51
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=46.55 E-value=1.3e+02 Score=25.45 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008742 308 ERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMD 350 (555)
Q Consensus 308 eRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~Q 350 (555)
-|+|-+..|++.+.+|+.-+.+.+..-..+...+|..+.....
T Consensus 9 ~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~ 51 (95)
T 3mov_A 9 SRENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKER 51 (95)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999888888888877665433
No 52
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=46.17 E-value=53 Score=30.86 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhccc
Q 008742 384 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT 425 (555)
Q Consensus 384 LAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQk 425 (555)
+..++..+..-..++..++.+++.+++.++.++..+.++.-+
T Consensus 116 ~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~ 157 (341)
T 3fpp_A 116 LDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIV 157 (341)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEE
Confidence 334444455555566677777888888888887777775543
No 53
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.91 E-value=1.1e+02 Score=27.95 Aligned_cols=78 Identities=19% Similarity=0.150 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHHHhHHHhHHH
Q 008742 343 TSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARAL--------AAAQKKLEMETNQVAELRQQTELKEVAHEE 414 (555)
Q Consensus 343 ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSL--------AaAQRkleeEk~rvaELqQQVkl~e~~~Es 414 (555)
..+.....++..|+ .-|.++=.+..+++.|--+|.-|| +.|.+....=..|+..|+.|+.-++.-+++
T Consensus 46 ~e~~~L~~~l~eE~----~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~ 121 (135)
T 2e7s_A 46 DEVKRLREDIAKEN----ELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDT 121 (135)
T ss_dssp HHHHTHHHHHHHTT----SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455554 445666677888888888887664 555555555567888888888888888888
Q ss_pred Hhhhhhhhcc
Q 008742 415 LSQRNSNTHQ 424 (555)
Q Consensus 415 lKQeL~d~kQ 424 (555)
+...|+++++
T Consensus 122 lq~QL~~LK~ 131 (135)
T 2e7s_A 122 LTLQLKNLKK 131 (135)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 8877777664
No 54
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=45.17 E-value=2.1e+02 Score=27.16 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=39.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008742 328 EERAKQQVKEASELQTSMMETMDAFELEKQR------HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAEL 401 (555)
Q Consensus 328 ~er~kQqaqEassLQ~~m~ET~QalerEqe~------h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaEL 401 (555)
+..++.+.+=+..|++.+.+-+..+..|... |+.. -+.-.-..++....+.....|..+.++|...-+.+...
T Consensus 89 e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~-K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a 167 (337)
T 2x3v_A 89 DKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKET-KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLA 167 (337)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSCSBHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445666666666666555444321 2222 22333344555555555666666666666655555544
Q ss_pred HHHH
Q 008742 402 RQQT 405 (555)
Q Consensus 402 qQQV 405 (555)
++++
T Consensus 168 ~~~~ 171 (337)
T 2x3v_A 168 MTRE 171 (337)
T ss_dssp HHHH
T ss_pred HhHH
Confidence 4444
No 55
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=43.92 E-value=1.7e+02 Score=25.92 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008742 442 REILEAEYTFIADKIIQLEDKAK 464 (555)
Q Consensus 442 rE~~reE~q~l~~kI~qLq~ea~ 464 (555)
||.+-.++..|..++..|+.+..
T Consensus 85 REkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555443
No 56
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=43.33 E-value=2e+02 Score=26.93 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=50.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhh
Q 008742 436 KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQA 503 (555)
Q Consensus 436 ~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE~ELE~RLhQLTD~LIQKQT 503 (555)
++-.||.+.+..-+..+..+|..|+..-.+|+++|....-. ..|||+++..|+-.|+|-+.
T Consensus 85 e~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~-------~relERemnsLKPeL~qL~K 145 (170)
T 3l4q_C 85 EGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASD-------NREIDKRMNSLKPDLMQLRK 145 (170)
T ss_dssp CCCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcCHHHHHHHH
Confidence 45566778888889999999999999999999888765433 47999999999999998654
No 57
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=43.17 E-value=2e+02 Score=27.24 Aligned_cols=74 Identities=15% Similarity=0.078 Sum_probs=42.7
Q ss_pred HHHHHHhHHHhHHHHhhhhhhhcccc-hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008742 401 LRQQTELKEVAHEELSQRNSNTHQTG-IYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 474 (555)
Q Consensus 401 LqQQVkl~e~~~EslKQeL~d~kQka-s~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TK 474 (555)
++.++..++..++.+++++.+++.-. .++-...++...+.+.+.+++++..+..+|.+++.+....+..+..+.
T Consensus 82 ~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~ 156 (369)
T 4dk0_A 82 YQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTK 156 (369)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCE
Confidence 33344444444554454444443221 111112244555666777788888888888888888887777765543
No 58
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=42.79 E-value=1.4e+02 Score=24.40 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=30.1
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhh
Q 008742 389 KKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLK 430 (555)
Q Consensus 389 RkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~ 430 (555)
..+.+...+...|++++......+..+...+....-....++
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778888888888888888888877777665444333
No 59
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=42.77 E-value=23 Score=33.36 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 444 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 444 ~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
..+.++.....++..++.+....+..+..++..+
T Consensus 118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l 151 (341)
T 3fpp_A 118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNL 151 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555556666666666666666655554
No 60
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=42.33 E-value=1.2e+02 Score=25.40 Aligned_cols=38 Identities=32% Similarity=0.350 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008742 364 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAEL 401 (555)
Q Consensus 364 mEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaEL 401 (555)
-++.+|+-.+|.+|++|=+-|..+|..+++-+.+-.-+
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~ 46 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERA 46 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888888777766443333
No 61
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=42.31 E-value=96 Score=24.94 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=28.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 436 KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 436 ~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
..++.|.|...+.+..+..++......+.+.+.+|....+-+
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKi 50 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKL 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445566666666666677766666666777777777666655
No 62
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=41.52 E-value=1.8e+02 Score=25.32 Aligned_cols=69 Identities=13% Similarity=0.034 Sum_probs=44.4
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhh
Q 008742 352 FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQK-KLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (555)
Q Consensus 352 lerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQR-kleeEk~rvaELqQQVkl~e~~~EslKQeL~d 421 (555)
+..-..+|...+.|..++...++.-.. .+..|....- ..+.=..+.++|+.+|..+...++.-++.|.+
T Consensus 90 v~~ll~kH~afe~El~a~~~~~~~l~~-~g~~Li~~~~~~~~~I~~rl~eL~~~W~~L~~~~~~R~~~L~e 159 (161)
T 3lbx_A 90 IQGKYQKHQSLEAEVQTKSRLMSELEK-TREERFTMGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLLR 159 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888887776654332 2333322111 01222367888888998888888877777654
No 63
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.36 E-value=58 Score=28.27 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhHHHhHHHHhhhhhh
Q 008742 397 QVAELRQQTELKEVAHEELSQRNSN 421 (555)
Q Consensus 397 rvaELqQQVkl~e~~~EslKQeL~d 421 (555)
.+..|+.+++.++...+.|++++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~ 37 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRM 37 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666544
No 64
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=41.13 E-value=1.8e+02 Score=25.42 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=16.3
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhh
Q 008742 389 KKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (555)
Q Consensus 389 RkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~ 422 (555)
--|+.++.+.-+-+-+|+-++-.+..|+|+|+|.
T Consensus 53 ~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 53 ESLEKKVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443333334444455555566666553
No 65
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=38.21 E-value=3.8e+02 Score=28.18 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008742 442 REILEAEYTFIADKIIQLEDK 462 (555)
Q Consensus 442 rE~~reE~q~l~~kI~qLq~e 462 (555)
+++=.+.|+..+.||.|+.+.
T Consensus 174 ~~vD~e~ye~qqKQL~qv~a~ 194 (390)
T 1deq_A 174 HKVDLEDYKNQQKQLEQVIAI 194 (390)
T ss_pred hhccHHHHHHHHHHHHhhhhh
Confidence 333356666666666665443
No 66
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=37.31 E-value=2.7e+02 Score=29.46 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 008742 381 ARALAAAQKKL 391 (555)
Q Consensus 381 AeSLAaAQRkl 391 (555)
+..|...|+.+
T Consensus 88 ~D~L~k~q~~V 98 (464)
T 1m1j_B 88 QTTLLKQEKTV 98 (464)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhh
Confidence 34444444433
No 67
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=35.81 E-value=51 Score=28.45 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008742 443 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 475 (555)
Q Consensus 443 E~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKk 475 (555)
+.+.+.|.....++..|+.+.+.||+++.+.|+
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455667788888888899999999999998875
No 68
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=35.76 E-value=2.8e+02 Score=25.99 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 008742 365 EALQLLAKLE 374 (555)
Q Consensus 365 EalaRLaKLE 374 (555)
|..+|+-|..
T Consensus 27 E~~~rlkK~~ 36 (168)
T 3o0z_A 27 DTAVRLRKSH 36 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 69
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=35.29 E-value=38 Score=26.53 Aligned_cols=25 Identities=44% Similarity=0.574 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Q 008742 309 RENMVARLEGEKQSLEKILEERAKQ 333 (555)
Q Consensus 309 RenmVa~LE~EKesLeKiL~er~kQ 333 (555)
-+|+|++|+....-|+|..+..++-
T Consensus 22 lenivarlendnanlekdianlekd 46 (56)
T 3he4_A 22 LENIVARLENDNANLEKDIANLEKD 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHH
Confidence 4799999999999999998877663
No 70
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=34.85 E-value=63 Score=26.31 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 008742 452 IADKIIQLEDKAKKLEGNIEMTR 474 (555)
Q Consensus 452 l~~kI~qLq~ea~KLEeEI~~TK 474 (555)
+++=|.+|+.+.++++.+++..+
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 71
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=34.43 E-value=99 Score=29.68 Aligned_cols=26 Identities=12% Similarity=-0.117 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHhHHHhHHHHhhhhhh
Q 008742 396 NQVAELRQQTELKEVAHEELSQRNSN 421 (555)
Q Consensus 396 ~rvaELqQQVkl~e~~~EslKQeL~d 421 (555)
.|.+.|+.++..+...|..-++.|.+
T Consensus 87 ~r~~~L~~~W~~L~~l~~~R~~~L~~ 112 (283)
T 3pe0_A 87 SFQAALQTQWSWMLQLCCCIEAHLKE 112 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655555554
No 72
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=34.07 E-value=3e+02 Score=25.77 Aligned_cols=74 Identities=15% Similarity=0.124 Sum_probs=32.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008742 330 RAKQQVKEASELQTSMMETMDAFELEKQRHNNT------RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQ 403 (555)
Q Consensus 330 r~kQqaqEassLQ~~m~ET~QalerEqe~h~~T------QmEalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQ 403 (555)
.++.+.+=+..|++...+-+..+..+. .|+.+ +.+...-..++....+.+...|..+.++|...-+.+..+++
T Consensus 100 ~a~~H~~~a~~L~~~v~~~l~~~~~~~-~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~ 178 (312)
T 3abh_A 100 VSELHLEVKASLMNDDFEKIKNWQKEA-FHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAIS 178 (312)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHH-CCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555544443 11111 11222223334444444445555555555555555555544
Q ss_pred H
Q 008742 404 Q 404 (555)
Q Consensus 404 Q 404 (555)
+
T Consensus 179 ~ 179 (312)
T 3abh_A 179 R 179 (312)
T ss_dssp H
T ss_pred H
Confidence 3
No 73
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.81 E-value=31 Score=31.42 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc
Q 008742 485 IELKRRLGQLTDHLIQKQAQVFPL 508 (555)
Q Consensus 485 ~ELE~RLhQLTD~LIQKQTqLEAL 508 (555)
..+|.|..+|-..|--|.+.|++|
T Consensus 99 ~~~e~r~~~L~~ql~e~e~ll~~l 122 (135)
T 2e7s_A 99 YAIEILNKRLTEQLREKDMLLDTL 122 (135)
T ss_dssp HHHHHHHHHHHHTTTHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999998888875
No 74
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=32.54 E-value=3e+02 Score=25.42 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=13.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008742 329 ERAKQQVKEASELQTSMMETMDAFELE 355 (555)
Q Consensus 329 er~kQqaqEassLQ~~m~ET~QalerE 355 (555)
..++.+.+-+..|++.+.+-+..+-.|
T Consensus 78 ~~a~~h~~~a~~l~~~v~~~l~~~~~e 104 (290)
T 3i2w_A 78 RISDVHMKIKDNLCNDVNSQIKTWQKE 104 (290)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555554443
No 75
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=32.13 E-value=2.3e+02 Score=23.80 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=29.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008742 435 SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (555)
Q Consensus 435 L~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl 477 (555)
++..+.+.+...+++..|+-+|.++++++-+.++.+.-++..+
T Consensus 32 ~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL 74 (101)
T 3u1c_A 32 KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777888888888888887777777776665554
No 76
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.52 E-value=2.1e+02 Score=23.32 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=11.9
Q ss_pred HhHHHHHHHHHHhHHHhHHHHh
Q 008742 395 TNQVAELRQQTELKEVAHEELS 416 (555)
Q Consensus 395 k~rvaELqQQVkl~e~~~EslK 416 (555)
..+..+++.+++..+..+..+.
T Consensus 23 ~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 23 TQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555556666665555553
No 77
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=31.38 E-value=2.2e+02 Score=23.63 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhh
Q 008742 368 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (555)
Q Consensus 368 aRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d 421 (555)
.|+..||.-......++.-.+..++.=...|+.|+=+++.....++.++++-.+
T Consensus 6 ~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 6 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455556554444445566666666666666666666666666666555554444
No 78
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=30.64 E-value=3.2e+02 Score=25.08 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHH
Q 008742 365 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 415 (555)
Q Consensus 365 EalaRLaKLE~e~qeLAeSLAaAQRkleeEk~rvaELqQQVkl~e~~~Esl 415 (555)
.+-.|..++|.....|..-|.-|+.+++.--+.|..|+..+.-++-.+...
T Consensus 67 kasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~ 117 (155)
T 2efr_A 67 KYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777777777777666666555433
No 79
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=30.04 E-value=2.4e+02 Score=23.43 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008742 446 EAEYTFIADKIIQLEDKAKK 465 (555)
Q Consensus 446 reE~q~l~~kI~qLq~ea~K 465 (555)
.+++..++-+|.+|++++-+
T Consensus 43 E~ei~sL~kKiq~lE~eld~ 62 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEK 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 80
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=29.99 E-value=2.7e+02 Score=23.95 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccc
Q 008742 385 AAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG 426 (555)
Q Consensus 385 AaAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQka 426 (555)
-.++.++.++..+++.|++.++.+...+..+++.+....+..
T Consensus 43 ~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~ 84 (107)
T 2no2_A 43 DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSE 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677788888888888888888777777777665555543
No 81
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.48 E-value=1.1e+02 Score=26.57 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=11.2
Q ss_pred HHHhHHHHHHHHHHhHHHhHHHHhhhh
Q 008742 393 METNQVAELRQQTELKEVAHEELSQRN 419 (555)
Q Consensus 393 eEk~rvaELqQQVkl~e~~~EslKQeL 419 (555)
.-+.+++.|+..-..++-..+.|.-+|
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 82
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=29.32 E-value=85 Score=27.59 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhh
Q 008742 383 ALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (555)
Q Consensus 383 SLAaAQRkleeEk~rvaELqQQVkl~e~~~EslKQe 418 (555)
|+.+.|..+..-+.++++|.+++..++..++.+.++
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888888888888888888777777755543
No 83
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=28.11 E-value=4.1e+02 Score=25.48 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=8.8
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 008742 333 QQVKEASELQTSMMETMDAF 352 (555)
Q Consensus 333 QqaqEassLQ~~m~ET~Qal 352 (555)
.+.+=+..|++...+-+..+
T Consensus 103 ~H~~la~~L~~~v~~~l~~~ 122 (350)
T 3aco_A 103 LHLEVKASLMNDDFEKIKNW 122 (350)
T ss_dssp HHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444554444444443
No 84
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.68 E-value=3.7e+02 Score=24.81 Aligned_cols=81 Identities=20% Similarity=0.163 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHHHhHHHh
Q 008742 340 ELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARAL--------AAAQKKLEMETNQVAELRQQTELKEVA 411 (555)
Q Consensus 340 sLQ~~m~ET~QalerEqe~h~~TQmEalaRLaKLE~e~qeLAeSL--------AaAQRkleeEk~rvaELqQQVkl~e~~ 411 (555)
.....+.....++..|+.. |.++=....+++.|--+|.-|| +.|.+.-..=..|+..|+.|++-++.-
T Consensus 55 ~~~~e~~~L~~~l~~E~~~----R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~ 130 (154)
T 2ocy_A 55 DRDDEVKRLREDIAKENEL----RTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTL 130 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445556666554 5556667888888888887664 566666666667888899999988888
Q ss_pred HHHHhhhhhhhcc
Q 008742 412 HEELSQRNSNTHQ 424 (555)
Q Consensus 412 ~EslKQeL~d~kQ 424 (555)
++++...|.+++.
T Consensus 131 l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 131 LDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887764
No 85
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=27.61 E-value=3.5e+02 Score=24.64 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=30.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHH-----HHHHHHHHHHHHHHHHHhhhhc
Q 008742 435 SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVE-----IELKRRLGQLTDHLIQKQAQVF 506 (555)
Q Consensus 435 L~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~TssE-----~ELE~RLhQLTD~LIQKQTqLE 506 (555)
++.+....+.+..++......|..+.....+|-. ..++.... .+|..|...|.+...+++..|+
T Consensus 144 v~~ll~~h~~l~~el~~~~~~i~~l~~~g~~L~~--------~~~~~~~~i~~~l~~L~~~w~~L~~~~~~R~~~L~ 212 (322)
T 1u4q_A 144 VQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSD--------DNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLE 212 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------TTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666555666666555555421 11232111 3455555555555555555444
No 86
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=27.59 E-value=2.7e+02 Score=27.78 Aligned_cols=74 Identities=11% Similarity=0.007 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhhh------hhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008742 386 AAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLK------RLAASKGVEFEREILEAEYTFIADKIIQL 459 (555)
Q Consensus 386 aAQRkleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l~------ql~eL~~~r~ErE~~reE~q~l~~kI~qL 459 (555)
..|-+|..=+..+.++++.+..++-.++.++..+++..++...-. +..++++..|+...++-.-.++..|..-|
T Consensus 306 ~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~ 385 (406)
T 4dyl_A 306 SVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELL 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 556667777788888888888888888999999988876544321 22344444444444444444444443333
No 87
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=26.64 E-value=2.9e+02 Score=23.39 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=45.2
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHhHHHhHHHHhhhhh
Q 008742 352 FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKK-LEMETNQVAELRQQTELKEVAHEELSQRNS 420 (555)
Q Consensus 352 lerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQRk-leeEk~rvaELqQQVkl~e~~~EslKQeL~ 420 (555)
+..-...|...+.|..++...++.-. ..++.|....-- .+.=..+.++|+.+|..+...++.-.++|.
T Consensus 80 v~~~l~kH~afe~El~a~~~~l~~v~-~~g~~Li~~~~~~~~~I~~rl~~l~~~W~~L~~~~~~r~~~L~ 148 (149)
T 3f31_A 80 LQGKLQKHQAFEAEVQANSGAIVKLD-ETGNLMISEGHFASETIRTRLMELHRQWELLLEKMREKGIKLL 148 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHH-HHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66777889999998888777776543 334444443221 122247788899999888888777666654
No 88
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.36 E-value=83 Score=24.20 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=19.9
Q ss_pred HhHHHHHHHHHHhHHHhHHHHhhhhhhh
Q 008742 395 TNQVAELRQQTELKEVAHEELSQRNSNT 422 (555)
Q Consensus 395 k~rvaELqQQVkl~e~~~EslKQeL~d~ 422 (555)
+...++|++++..++..+++++.+|..|
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556777777777777777777777654
No 89
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.00 E-value=1.1e+02 Score=24.84 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=19.2
Q ss_pred HHHHHHHHHH-hHHHHHHHHHHhHHHhHH
Q 008742 386 AAQKKLEMET-NQVAELRQQTELKEVAHE 413 (555)
Q Consensus 386 aAQRkleeEk-~rvaELqQQVkl~e~~~E 413 (555)
+|||.+-+.+ .++.+|+.+|..++....
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~ 46 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777776665 567888888876665444
No 90
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=25.63 E-value=2.5e+02 Score=25.51 Aligned_cols=26 Identities=8% Similarity=0.003 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 446 EAEYTFIADKIIQLEDKAKKLEGNIE 471 (555)
Q Consensus 446 reE~q~l~~kI~qLq~ea~KLEeEI~ 471 (555)
+..+..+..++.+.+.+...++..+.
T Consensus 104 ~~~~~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 104 LADAQQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444455555555544444444443
No 91
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=25.48 E-value=3.9e+02 Score=24.73 Aligned_cols=35 Identities=17% Similarity=0.034 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 438 VEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEM 472 (555)
Q Consensus 438 ~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~ 472 (555)
.+..+..++.+++.+...+.+|..+.+|++++...
T Consensus 78 sr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQI 112 (146)
T 2xnx_M 78 NRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQI 112 (146)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33344455677778888888888888887666543
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.01 E-value=5.2e+02 Score=25.65 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=17.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008742 315 RLEGEKQSLEKILEERAKQQVKEASELQTS 344 (555)
Q Consensus 315 ~LE~EKesLeKiL~er~kQqaqEassLQ~~ 344 (555)
.|+.++..|+..+....+.+......++..
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~~~~~ 393 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQA 393 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHh
Confidence 566777777777766665555444444433
No 93
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.28 E-value=86 Score=21.83 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=21.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008742 435 SKGVEFEREILEAEYTFIADKIIQLE 460 (555)
Q Consensus 435 L~~~r~ErE~~reE~q~l~~kI~qLq 460 (555)
+..++||-+.+++.+..+..+|.+|+
T Consensus 2 idalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHHHHhc
Confidence 34678899999998888888888774
No 94
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=24.27 E-value=7.3e+02 Score=27.12 Aligned_cols=65 Identities=23% Similarity=0.197 Sum_probs=36.0
Q ss_pred cchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHH-HHHHHHHHHHHHHHHHH
Q 008742 425 TGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE-DPTEVE-IELKRRLGQLTDHLIQK 501 (555)
Q Consensus 425 kas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~-~~TssE-~ELE~RLhQLTD~LIQK 501 (555)
++++-.+++.++.| .+.+-+-+.++..+|..|..-.+|+ ... +|-... -+|..|++.|.-.||+.
T Consensus 114 G~p~~~~Ld~lQ~w---~e~lae~l~q~rqql~~l~~l~~k~---------~~~~dp~~~~~~~l~~~~~~ll~~Lv~s 180 (575)
T 1bf5_A 114 GGPPNACLDQLQNW---FTIVAESLQQVRQQLKKLEELEQKY---------TYEHDPITKNKQVLWDRTFSLFQQLIQS 180 (575)
T ss_dssp TSSCCCCTHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHC---------CCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhc---------CCCCCccccchHHHHHHHHHHHHHHHHh
Confidence 34343456666666 5555555555555554443333321 111 111112 67889999999999984
No 95
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=24.02 E-value=42 Score=28.27 Aligned_cols=28 Identities=32% Similarity=0.322 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008742 437 GVEFEREILEAEYTFIADKIIQLEDKAK 464 (555)
Q Consensus 437 ~~r~ErE~~reE~q~l~~kI~qLq~ea~ 464 (555)
.++.|.|.+++-|..|.+++.+|+.+-.
T Consensus 12 AVREEVevLKe~I~EL~e~~~qLE~EN~ 39 (78)
T 1dip_A 12 AVREEVEILKEQIRELVEKNSQLERENT 39 (78)
T ss_dssp TCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999888888888776633
No 96
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.00 E-value=2.2e+02 Score=25.11 Aligned_cols=25 Identities=8% Similarity=0.120 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhHHHhHHHHhhhhhh
Q 008742 397 QVAELRQQTELKEVAHEELSQRNSN 421 (555)
Q Consensus 397 rvaELqQQVkl~e~~~EslKQeL~d 421 (555)
.++.|+..|..++..++.++.+.+.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~ 40 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQR 40 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554444
No 97
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=23.64 E-value=2.6e+02 Score=24.84 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh--c-cCc----h-hHHHHHHHHHHHHHHHHHH
Q 008742 446 EAEYTFIADKIIQLED-KAKKLEGNIEMTRKE--I-EDP----T-EVEIELKRRLGQLTDHLIQ 500 (555)
Q Consensus 446 reE~q~l~~kI~qLq~-ea~KLEeEI~~TKkt--l-~~~----T-ssE~ELE~RLhQLTD~LIQ 500 (555)
.+.|.+|...+..|+. +...+-..|..++.. + +|. . .-+..+++|+++|.+.|=.
T Consensus 8 ~~g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~ 71 (158)
T 1grj_A 8 LRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSN 71 (158)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3566777777777776 455555555555432 1 222 2 3468999999999988843
No 98
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=23.30 E-value=2.3e+02 Score=23.65 Aligned_cols=21 Identities=29% Similarity=0.101 Sum_probs=11.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 008742 435 SKGVEFEREILEAEYTFIADK 455 (555)
Q Consensus 435 L~~~r~ErE~~reE~q~l~~k 455 (555)
++..+++++.++.|+..+...
T Consensus 36 Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 36 LEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566665555443
No 99
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=22.87 E-value=1.7e+02 Score=22.80 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008742 444 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 476 (555)
Q Consensus 444 ~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt 476 (555)
.+-..++.|..|+.+|..++..++.++..++.+
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888887777766654
No 100
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.85 E-value=5.6e+02 Score=25.28 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=17.2
Q ss_pred CCCCCccchHH------HhhhhhhhhcccccccCCccc
Q 008742 45 KSSGSVSLKDQ------LKKRTQEINDYRGKLQSDPNV 76 (555)
Q Consensus 45 ksg~~v~lkdq------lkkk~~~~~~~~gkl~sd~~~ 76 (555)
..|--+||.|- +-.-..+...|.||+-.=|..
T Consensus 86 ~~G~l~~L~~~~~~~~~~~~~~~~~~~~dGk~YglP~~ 123 (471)
T 3mq9_A 86 QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIA 123 (471)
T ss_dssp HTTCBCCCCCCHHHHTTBCHHHHGGGEETTEECEEEEE
T ss_pred HCCceecCCcchHHHhhcCHHHHHhhEECCEEEEEeee
Confidence 44555566542 222233445678888776654
No 101
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.83 E-value=3e+02 Score=23.15 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008742 441 EREILEAEYTFIADKIIQ 458 (555)
Q Consensus 441 ErE~~reE~q~l~~kI~q 458 (555)
|.+-++++-..+......
T Consensus 28 EieELKekN~~L~~e~~e 45 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 102
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.65 E-value=3.9e+02 Score=23.44 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=37.4
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHH
Q 008742 352 FELEKQRHNNTRMEALQLLAKLETANADLAR-------ALAAAQKKLEMETNQVAELRQQTE 406 (555)
Q Consensus 352 lerEqe~h~~TQmEalaRLaKLE~e~qeLAe-------SLAaAQRkleeEk~rvaELqQQVk 406 (555)
+..|-...+.++.....++.+||..|-+|-+ ||.-.+.+|..-.-|.+-|+..+.
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666677778889999998888744 455566666666666666665555
No 103
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=22.46 E-value=2.3e+02 Score=22.99 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHhHHHhHHHHhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----ccC
Q 008742 404 QTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE----IED 479 (555)
Q Consensus 404 QVkl~e~~~EslKQeL~d~kQkas~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt----l~~ 479 (555)
++...+....+|...+.++++.. ..++..++.+|..|+.+.++++.+|.+--++ |.-
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~-------------------~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Llnv 62 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENF-------------------AVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNV 62 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred chhHHHHH
Q 008742 480 PTEVEIEL 487 (555)
Q Consensus 480 ~TssE~EL 487 (555)
++..+.|.
T Consensus 63 K~~Ld~EI 70 (84)
T 1gk4_A 63 KMALDIEI 70 (84)
T ss_dssp HHHHHHHH
T ss_pred HHhhHHHH
No 104
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=20.57 E-value=2.3e+02 Score=32.39 Aligned_cols=117 Identities=12% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHHhHhhHHHHHHHHH
Q 008742 304 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDA------------FELEKQRHNNTRMEALQLLA 371 (555)
Q Consensus 304 aaIkeRenmVa~LE~EKesLeKiL~er~kQqaqEassLQ~~m~ET~Qa------------lerEqe~h~~TQmEalaRLa 371 (555)
.++.+|+ ..|..|..+|+++.. -..+=+..++...+-+-+..+. ++.=..+|.....+..+.+.
T Consensus 865 ~ae~eRe---~~L~~el~Rqe~L~~-L~qkF~rka~~~e~Wl~ek~~~l~s~d~g~dL~~Vqal~KKhea~e~dl~a~e~ 940 (1010)
T 1g8x_A 865 KAEQEHA---EALRIELKRQKKIAV-LLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEG 940 (1010)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTHHHHSSCCSCCSTTTTGGGTTSHHHHTTTTTHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHH-HHHHhHHHhHHHHhhhhhhhcc
Q 008742 372 KLETANADLARALAAAQKKLEMETN-QVAELR-QQTELKEVAHEELSQRNSNTHQ 424 (555)
Q Consensus 372 KLE~e~qeLAeSLAaAQRkleeEk~-rvaELq-QQVkl~e~~~EslKQeL~d~kQ 424 (555)
+++++...+|+.|....=--.++.. |+.+|. ++|..++.....-|++|.+-.|
T Consensus 941 ri~~~l~~~a~eL~~~~y~~~~~I~~R~~~L~~~~W~~L~~la~~Rk~~Le~~lq 995 (1010)
T 1g8x_A 941 QSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELE 995 (1010)
T ss_dssp THHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTTHHHHHHHHTHHHHTTTTTTTS
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 105
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.44 E-value=2.2e+02 Score=23.56 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=29.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008742 428 YLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 476 (555)
Q Consensus 428 ~l~ql~eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKkt 476 (555)
++++++.+.+++.-...-.++++.....|..|+.+....+++|...+..
T Consensus 14 ~~~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 14 SIEGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777666666777777777777777766666666544443
No 106
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=20.04 E-value=5e+02 Score=23.65 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=71.6
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHhHHHhHHHHhhhhhhhcccchhh
Q 008742 351 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQK-KLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL 429 (555)
Q Consensus 351 alerEqe~h~~TQmEalaRLaKLE~e~qeLAeSLAaAQR-kleeEk~rvaELqQQVkl~e~~~EslKQeL~d~kQkas~l 429 (555)
.++.-...|...+.|.-.+...++.-. ..+..|...-- -...=..++.+|..++..+...+..-++.|.+.-+.-.+.
T Consensus 143 ~v~~ll~~h~~l~~el~~~~~~i~~l~-~~g~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~R~~~L~~~~~~~qf~ 221 (322)
T 1u4q_A 143 GVQNLRKKHKRLEAELAAHEPAIQGVL-DTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFV 221 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677778888877777666554322 22333321100 0111124556666666666666665555555422111111
Q ss_pred hhhh-----------------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch-----
Q 008742 430 KRLA-----------------------ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT----- 481 (555)
Q Consensus 430 ~ql~-----------------------eL~~~r~ErE~~reE~q~l~~kI~qLq~ea~KLEeEI~~TKktl~~~T----- 481 (555)
..+. ..+.+-.+.+.+..++......|.++...+..|-.. .+|.
T Consensus 222 ~~~~~~~~Wl~~~e~~l~~~~~g~~~~~~~~ll~~h~~~~~el~~~~~~v~~l~~~~~~L~~~--------~~~~~~~i~ 293 (322)
T 1u4q_A 222 ANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK--------NNHHVENIT 293 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------TCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCChHHHH
Confidence 1111 222222233333444444444444444444443221 1222
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhc
Q 008742 482 EVEIELKRRLGQLTDHLIQKQAQVF 506 (555)
Q Consensus 482 ssE~ELE~RLhQLTD~LIQKQTqLE 506 (555)
..-.+|..|+.+|....-..+..|+
T Consensus 294 ~~~~~l~~rw~~l~~~~~~R~~~L~ 318 (322)
T 1u4q_A 294 AKMKGLKGKVSDLEKAAAQRKAKLD 318 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2236788888888888888777775
Done!