Query 008743
Match_columns 555
No_of_seqs 240 out of 2086
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 16:01:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02286 arginine-tRNA ligase 100.0 5E-123 1E-127 1021.5 57.5 519 35-555 23-542 (576)
2 COG0018 ArgS Arginyl-tRNA synt 100.0 9E-123 2E-127 1006.4 52.9 526 10-555 2-540 (577)
3 PRK12451 arginyl-tRNA syntheta 100.0 3E-115 7E-120 958.8 54.4 521 10-555 2-527 (562)
4 KOG4426 Arginyl-tRNA synthetas 100.0 2E-114 4E-119 869.1 48.2 546 3-555 65-615 (656)
5 TIGR00456 argS arginyl-tRNA sy 100.0 6E-107 1E-111 896.5 55.3 518 12-555 2-529 (566)
6 PRK01611 argS arginyl-tRNA syn 100.0 5.6E-97 1E-101 808.4 49.2 460 8-553 2-469 (507)
7 KOG1195 Arginyl-tRNA synthetas 100.0 1.6E-90 3.5E-95 711.6 37.7 491 41-555 33-531 (567)
8 PF00750 tRNA-synt_1d: tRNA sy 100.0 8.8E-78 1.9E-82 628.6 26.5 340 110-460 2-354 (354)
9 cd00671 ArgRS_core catalytic c 100.0 3.5E-54 7.6E-59 420.6 24.3 209 129-397 1-212 (212)
10 PTZ00399 cysteinyl-tRNA-synthe 100.0 1.8E-30 4E-35 288.9 28.6 323 126-550 57-437 (651)
11 PRK11893 methionyl-tRNA synthe 100.0 2.1E-30 4.5E-35 285.3 27.9 329 128-553 1-429 (511)
12 TIGR00398 metG methionyl-tRNA 100.0 3.5E-30 7.7E-35 284.5 29.3 328 131-553 2-457 (530)
13 PRK00260 cysS cysteinyl-tRNA s 100.0 3E-29 6.4E-34 271.4 29.1 312 126-551 20-376 (463)
14 PLN02946 cysteine-tRNA ligase 100.0 3E-29 6.6E-34 271.7 26.6 319 126-549 77-442 (557)
15 PRK00133 metG methionyl-tRNA s 100.0 3.1E-28 6.8E-33 275.0 29.2 327 128-553 2-456 (673)
16 COG0143 MetG Methionyl-tRNA sy 100.0 4.6E-28 1E-32 262.6 29.1 329 127-552 4-463 (558)
17 TIGR00435 cysS cysteinyl-tRNA 100.0 2.6E-27 5.6E-32 255.9 29.1 249 126-466 18-311 (465)
18 PRK12267 methionyl-tRNA synthe 100.0 1.7E-27 3.7E-32 268.4 24.2 327 128-553 4-429 (648)
19 PLN02224 methionine-tRNA ligas 100.0 7.5E-27 1.6E-31 258.3 27.7 333 125-552 66-495 (616)
20 PRK12268 methionyl-tRNA synthe 100.0 1.1E-26 2.3E-31 258.2 26.4 332 128-553 3-463 (556)
21 PRK14536 cysS cysteinyl-tRNA s 99.9 1.1E-25 2.4E-30 241.7 27.6 337 126-547 20-404 (490)
22 PRK14534 cysS cysteinyl-tRNA s 99.9 2.7E-25 5.9E-30 237.6 27.7 258 128-466 20-326 (481)
23 COG0215 CysS Cysteinyl-tRNA sy 99.9 1.4E-25 3.1E-30 234.9 24.1 247 126-465 19-313 (464)
24 PRK12418 cysteinyl-tRNA synthe 99.9 4.3E-25 9.3E-30 230.8 25.9 305 125-549 5-362 (384)
25 PLN02610 probable methionyl-tR 99.9 7.5E-25 1.6E-29 249.1 28.9 336 127-552 16-484 (801)
26 PRK14535 cysS cysteinyl-tRNA s 99.9 7.1E-25 1.5E-29 239.0 27.2 251 126-465 245-553 (699)
27 TIGR03447 mycothiol_MshC cyste 99.9 3.6E-24 7.8E-29 224.9 23.8 247 127-465 34-334 (411)
28 PF01406 tRNA-synt_1e: tRNA sy 99.9 1.4E-24 2.9E-29 217.4 18.6 249 125-465 4-297 (300)
29 cd00668 Ile_Leu_Val_MetRS_core 99.9 3.6E-24 7.8E-29 221.4 22.2 253 129-458 1-312 (312)
30 cd00674 LysRS_core_class_I cat 99.9 2.7E-23 5.9E-28 215.3 22.0 256 128-462 19-318 (353)
31 cd00812 LeuRS_core catalytic c 99.9 7.7E-24 1.7E-28 218.8 17.3 242 129-460 1-314 (314)
32 cd00814 MetRS_core catalytic c 99.9 4.7E-23 1E-27 213.6 20.7 240 129-458 1-319 (319)
33 PRK05729 valS valyl-tRNA synth 99.9 2.4E-21 5.3E-26 224.9 29.4 135 379-549 508-645 (874)
34 TIGR00464 gltX_bact glutamyl-t 99.9 1.4E-22 3E-27 218.8 16.9 138 308-468 172-313 (470)
35 cd00818 IleRS_core catalytic c 99.9 5E-22 1.1E-26 207.2 20.0 256 129-458 2-338 (338)
36 PRK13208 valS valyl-tRNA synth 99.9 7.2E-21 1.6E-25 219.4 30.1 128 127-294 37-169 (800)
37 cd00817 ValRS_core catalytic c 99.9 1E-21 2.3E-26 208.1 20.3 132 129-297 2-138 (382)
38 PRK01406 gltX glutamyl-tRNA sy 99.9 6.1E-23 1.3E-27 221.7 10.3 137 308-468 182-322 (476)
39 TIGR00422 valS valyl-tRNA synt 99.9 1.4E-20 2.9E-25 218.7 30.0 131 127-294 32-167 (861)
40 cd00672 CysRS_core catalytic c 99.9 2.4E-21 5.2E-26 188.6 19.8 194 126-459 17-213 (213)
41 cd00802 class_I_aaRS_core cata 99.9 5.9E-22 1.3E-26 181.6 12.8 143 132-396 1-143 (143)
42 cd07956 Anticodon_Ia_Arg Antic 99.9 4.9E-22 1.1E-26 184.9 9.4 119 437-555 2-120 (156)
43 PRK00750 lysK lysyl-tRNA synth 99.9 2.6E-20 5.7E-25 203.3 23.0 255 129-460 24-321 (510)
44 COG0525 ValS Valyl-tRNA synthe 99.9 4.1E-19 8.9E-24 198.6 31.0 139 371-549 508-649 (877)
45 KOG0436 Methionyl-tRNA synthet 99.8 1.5E-20 3.4E-25 190.5 16.4 316 138-552 49-476 (578)
46 PF09334 tRNA-synt_1g: tRNA sy 99.8 7.1E-21 1.5E-25 201.7 14.5 261 131-481 2-390 (391)
47 TIGR00392 ileS isoleucyl-tRNA 99.8 2.3E-19 4.9E-24 208.6 26.7 168 342-549 567-739 (861)
48 PRK14895 gltX glutamyl-tRNA sy 99.8 6E-20 1.3E-24 197.2 18.1 139 308-468 171-311 (513)
49 PRK14900 valS valyl-tRNA synth 99.8 2.6E-18 5.6E-23 201.8 32.0 137 381-552 528-668 (1052)
50 PRK12558 glutamyl-tRNA synthet 99.8 2.4E-20 5.3E-25 198.2 13.1 197 250-468 51-311 (445)
51 PRK06039 ileS isoleucyl-tRNA s 99.8 4.6E-18 9.9E-23 199.2 33.2 140 379-549 580-720 (975)
52 KOG2007 Cysteinyl-tRNA synthet 99.8 4.4E-18 9.6E-23 176.6 22.3 326 125-550 51-425 (586)
53 PLN02943 aminoacyl-tRNA ligase 99.8 1.4E-17 3.1E-22 194.1 27.1 132 126-294 86-222 (958)
54 PRK05743 ileS isoleucyl-tRNA s 99.8 2.6E-17 5.6E-22 191.5 28.5 166 342-549 548-717 (912)
55 TIGR00467 lysS_arch lysyl-tRNA 99.8 5.1E-18 1.1E-22 184.2 19.7 260 128-463 18-317 (515)
56 PTZ00419 valyl-tRNA synthetase 99.8 7.5E-17 1.6E-21 189.7 29.7 133 126-294 58-195 (995)
57 PRK12410 glutamylglutaminyl-tR 99.8 1.6E-18 3.5E-23 183.5 11.4 139 308-468 165-305 (433)
58 PRK13804 ileS isoleucyl-tRNA s 99.8 2.2E-16 4.7E-21 184.3 29.5 167 342-549 586-755 (961)
59 PLN02843 isoleucyl-tRNA synthe 99.7 6.5E-16 1.4E-20 180.4 29.8 174 342-551 567-747 (974)
60 PLN02627 glutamyl-tRNA synthet 99.7 5.7E-18 1.2E-22 182.3 11.0 137 308-468 224-365 (535)
61 PLN02381 valyl-tRNA synthetase 99.7 1.1E-15 2.4E-20 179.5 30.8 133 126-294 126-263 (1066)
62 TIGR00395 leuS_arch leucyl-tRN 99.7 1.8E-15 3.8E-20 176.8 31.0 139 127-294 24-167 (938)
63 PLN02882 aminoacyl-tRNA ligase 99.7 1.6E-15 3.6E-20 179.1 29.9 132 127-294 37-173 (1159)
64 cd00808 GluRS_core catalytic c 99.7 5.2E-17 1.1E-21 159.9 13.8 216 135-467 6-233 (239)
65 PF03485 Arg_tRNA_synt_N: Argi 99.7 1.8E-17 3.9E-22 138.2 7.9 82 14-101 2-85 (85)
66 TIGR00396 leuS_bact leucyl-tRN 99.7 1.9E-15 4.1E-20 174.3 26.7 166 342-548 523-725 (842)
67 PRK00390 leuS leucyl-tRNA synt 99.7 6.6E-15 1.4E-19 169.4 28.4 157 342-549 526-687 (805)
68 PF00749 tRNA-synt_1c: tRNA sy 99.7 4.6E-16 9.9E-21 160.4 15.8 240 134-464 5-313 (314)
69 PTZ00427 isoleucine-tRNA ligas 99.7 3.4E-14 7.4E-19 167.7 32.8 132 127-294 101-237 (1205)
70 cd00418 GlxRS_core catalytic c 99.7 2.6E-16 5.7E-21 153.8 12.2 169 253-468 53-225 (230)
71 PF01921 tRNA-synt_1f: tRNA sy 99.7 5.6E-17 1.2E-21 166.7 7.5 258 127-463 22-326 (360)
72 COG0008 GlnS Glutamyl- and glu 99.7 3.6E-16 7.7E-21 167.4 10.9 138 311-468 184-323 (472)
73 PRK04156 gltX glutamyl-tRNA sy 99.6 9.4E-16 2E-20 167.1 13.3 230 127-466 99-401 (567)
74 cd09287 GluRS_non_core catalyt 99.6 8.9E-16 1.9E-20 150.7 10.7 167 134-397 5-172 (240)
75 COG1384 LysS Lysyl-tRNA synthe 99.6 2.8E-15 6.1E-20 158.0 15.1 260 128-465 19-323 (521)
76 PLN02563 aminoacyl-tRNA ligase 99.6 4.7E-14 1E-18 163.6 26.3 119 391-548 723-843 (963)
77 PF00133 tRNA-synt_1: tRNA syn 99.6 4E-15 8.7E-20 166.6 16.3 133 126-294 21-158 (601)
78 COG0495 LeuS Leucyl-tRNA synth 99.6 5.7E-14 1.2E-18 158.0 24.6 114 128-294 34-152 (814)
79 TIGR03838 queuosine_YadB gluta 99.6 1E-14 2.2E-19 146.5 12.6 184 136-405 6-242 (272)
80 PF05746 DALR_1: DALR anticodo 99.6 4.8E-15 1E-19 131.3 6.5 82 474-555 1-82 (119)
81 PRK05710 glutamyl-Q tRNA(Asp) 99.6 4.5E-14 9.8E-19 143.3 14.0 136 254-404 58-248 (299)
82 KOG0432 Valyl-tRNA synthetase 99.5 7.6E-12 1.6E-16 137.9 29.7 135 127-297 74-213 (995)
83 KOG1149 Glutamyl-tRNA syntheta 99.5 5.3E-13 1.1E-17 136.9 12.8 140 307-468 211-353 (524)
84 PLN03233 putative glutamate-tR 99.5 3.8E-13 8.3E-18 145.1 12.5 231 128-466 10-309 (523)
85 cd00807 GlnRS_core catalytic c 99.5 3.2E-13 7E-18 132.2 10.7 218 134-467 5-228 (238)
86 PTZ00402 glutamyl-tRNA synthet 99.4 8.7E-13 1.9E-17 143.8 13.1 129 308-468 208-353 (601)
87 PRK05347 glutaminyl-tRNA synth 99.4 9.8E-12 2.1E-16 134.7 16.8 129 296-466 170-333 (554)
88 PLN02907 glutamate-tRNA ligase 99.4 2.4E-12 5.1E-17 145.4 12.1 236 128-467 212-512 (722)
89 TIGR00463 gltX_arch glutamyl-t 99.4 2.5E-12 5.4E-17 140.3 11.9 239 128-466 92-392 (560)
90 smart00836 DALR_1 DALR anticod 99.4 1.4E-12 3.1E-17 116.0 7.7 82 474-555 1-85 (122)
91 COG0060 IleS Isoleucyl-tRNA sy 99.3 1E-11 2.2E-16 141.3 9.7 162 342-549 558-727 (933)
92 TIGR00440 glnS glutaminyl-tRNA 99.2 1.1E-10 2.4E-15 126.4 15.9 127 318-463 182-325 (522)
93 PRK12300 leuS leucyl-tRNA synt 99.2 9.5E-11 2.1E-15 136.8 15.9 166 336-552 529-696 (897)
94 PRK14703 glutaminyl-tRNA synth 99.2 4.7E-10 1E-14 126.7 16.3 117 308-465 191-335 (771)
95 PLN02859 glutamine-tRNA ligase 99.2 2.2E-10 4.8E-15 128.1 12.7 102 325-466 445-563 (788)
96 KOG1247 Methionyl-tRNA synthet 99.0 4.6E-09 1E-13 107.6 15.6 331 125-552 11-472 (567)
97 PTZ00437 glutaminyl-tRNA synth 99.0 2.1E-09 4.6E-14 116.7 13.3 32 128-160 50-81 (574)
98 PLN02959 aminoacyl-tRNA ligase 98.8 8.5E-08 1.8E-12 113.9 15.4 62 127-188 44-105 (1084)
99 PLN02959 aminoacyl-tRNA ligase 98.6 4.1E-07 8.9E-12 108.1 13.8 114 381-538 709-826 (1084)
100 KOG0435 Leucyl-tRNA synthetase 98.5 8.4E-08 1.8E-12 103.8 4.5 114 127-294 57-175 (876)
101 PRK12300 leuS leucyl-tRNA synt 98.3 1.8E-06 3.8E-11 101.3 9.2 123 143-294 1-128 (897)
102 KOG0433 Isoleucyl-tRNA synthet 98.3 3.6E-06 7.8E-11 92.2 9.9 173 342-549 569-744 (937)
103 COG0060 IleS Isoleucyl-tRNA sy 97.6 0.00019 4.1E-09 82.9 9.1 130 128-294 49-183 (933)
104 PRK13354 tyrosyl-tRNA syntheta 97.4 0.00097 2.1E-08 71.5 11.0 61 335-405 184-244 (410)
105 PRK05912 tyrosyl-tRNA syntheta 97.4 0.00082 1.8E-08 72.1 9.9 60 335-404 186-245 (408)
106 PRK12285 tryptophanyl-tRNA syn 97.3 0.0034 7.3E-08 66.4 12.9 59 342-408 206-269 (368)
107 KOG0434 Isoleucyl-tRNA synthet 97.2 0.0018 4E-08 71.0 10.7 134 380-549 590-733 (1070)
108 PRK08560 tyrosyl-tRNA syntheta 97.2 0.0019 4.1E-08 67.5 10.5 64 336-409 167-233 (329)
109 TIGR00233 trpS tryptophanyl-tR 97.2 0.0034 7.4E-08 65.5 12.3 67 336-404 138-206 (328)
110 PTZ00126 tyrosyl-tRNA syntheta 97.2 0.0054 1.2E-07 65.1 13.4 60 336-404 209-271 (383)
111 KOG1147 Glutamyl-tRNA syntheta 97.1 0.0032 6.9E-08 67.5 10.1 41 254-294 253-294 (712)
112 PLN02486 aminoacyl-tRNA ligase 96.8 0.095 2.1E-06 55.7 19.0 53 344-404 224-279 (383)
113 COG0162 TyrS Tyrosyl-tRNA synt 96.3 0.0073 1.6E-07 64.2 6.6 53 342-402 183-235 (401)
114 TIGR00234 tyrS tyrosyl-tRNA sy 96.1 0.045 9.8E-07 58.2 11.3 58 337-404 177-234 (377)
115 KOG0433 Isoleucyl-tRNA synthet 96.1 0.033 7.1E-07 62.1 10.2 120 139-301 66-194 (937)
116 KOG0434 Isoleucyl-tRNA synthet 95.7 0.029 6.2E-07 62.0 7.8 130 129-294 39-173 (1070)
117 KOG0435 Leucyl-tRNA synthetase 95.7 0.068 1.5E-06 59.2 10.3 122 391-548 617-742 (876)
118 cd07375 Anticodon_Ia_like Anti 95.2 0.09 2E-06 45.1 7.9 75 474-551 10-84 (117)
119 PTZ00348 tyrosyl-tRNA syntheta 95.2 0.13 2.7E-06 58.6 10.8 65 336-409 174-241 (682)
120 KOG0437 Leucyl-tRNA synthetase 95.0 0.13 2.8E-06 57.5 9.9 161 127-293 43-232 (1080)
121 cd00395 Tyr_Trp_RS_core cataly 94.7 0.046 1E-06 55.6 5.2 64 335-408 151-215 (273)
122 cd00805 TyrRS_core catalytic c 94.6 0.028 6.2E-07 57.0 3.4 60 337-407 151-210 (269)
123 COG0180 TrpS Tryptophanyl-tRNA 94.0 0.15 3.3E-06 52.4 7.3 65 336-408 144-216 (314)
124 KOG0437 Leucyl-tRNA synthetase 93.7 0.18 3.9E-06 56.5 7.4 52 382-463 702-754 (1080)
125 PRK12556 tryptophanyl-tRNA syn 93.3 0.099 2.2E-06 54.6 4.7 65 336-404 148-215 (332)
126 PRK12284 tryptophanyl-tRNA syn 93.2 0.094 2E-06 56.2 4.4 67 336-404 147-215 (431)
127 PF00579 tRNA-synt_1b: tRNA sy 93.2 0.074 1.6E-06 54.6 3.5 67 336-408 148-216 (292)
128 cd00806 TrpRS_core catalytic c 92.5 0.16 3.4E-06 52.0 4.6 67 336-404 136-205 (280)
129 cd07957 Anticodon_Ia_Met Antic 92.0 0.87 1.9E-05 39.9 8.4 74 474-552 9-82 (129)
130 PRK00927 tryptophanyl-tRNA syn 90.8 0.27 5.8E-06 51.5 4.3 68 336-405 137-210 (333)
131 cd07958 Anticodon_Ia_Leu_BEm A 89.9 2.1 4.5E-05 36.7 8.6 74 476-552 11-84 (117)
132 PRK12282 tryptophanyl-tRNA syn 88.6 0.42 9.2E-06 50.0 3.7 65 336-405 141-210 (333)
133 cd07959 Anticodon_Ia_Leu_AEc A 87.0 3.1 6.8E-05 35.8 7.8 70 477-552 12-82 (117)
134 PRK01233 glyS glycyl-tRNA synt 86.7 3.4 7.3E-05 47.4 9.7 83 470-554 567-649 (682)
135 PRK12283 tryptophanyl-tRNA syn 86.6 0.61 1.3E-05 49.7 3.5 37 134-177 6-43 (398)
136 TIGR00211 glyS glycyl-tRNA syn 83.7 6.5 0.00014 45.2 10.2 83 470-554 577-659 (691)
137 KOG1148 Glutaminyl-tRNA synthe 78.6 2.3 4.9E-05 46.9 4.0 59 127-186 246-332 (764)
138 COG0751 GlyS Glycyl-tRNA synth 75.6 15 0.00033 41.8 9.5 82 471-554 577-658 (691)
139 PLN02886 aminoacyl-tRNA ligase 74.3 4 8.7E-05 43.5 4.5 28 336-365 183-210 (389)
140 PRK14908 glycyl-tRNA synthetas 72.2 23 0.00049 42.3 10.3 78 470-554 892-969 (1000)
141 PF00579 tRNA-synt_1b: tRNA sy 68.8 3.8 8.2E-05 42.0 2.8 44 127-177 3-46 (292)
142 cd00805 TyrRS_core catalytic c 68.7 4.3 9.2E-05 41.2 3.1 39 134-178 4-43 (269)
143 cd07962 Anticodon_Ia_Val Antic 66.4 13 0.00028 33.1 5.5 48 505-552 41-90 (135)
144 cd00806 TrpRS_core catalytic c 61.1 7.2 0.00016 39.8 3.1 39 134-177 3-41 (280)
145 cd00395 Tyr_Trp_RS_core cataly 54.6 11 0.00025 38.2 3.2 38 134-177 3-41 (273)
146 cd07960 Anticodon_Ia_Ile_BEm A 49.9 37 0.00081 31.8 5.8 47 505-551 43-91 (180)
147 cd07961 Anticodon_Ia_Ile_ABEc 49.4 37 0.0008 31.9 5.7 45 505-549 46-90 (183)
148 KOG2623 Tyrosyl-tRNA synthetas 46.3 37 0.00081 36.0 5.4 57 340-403 228-285 (467)
149 PLN02886 aminoacyl-tRNA ligase 44.9 14 0.0003 39.6 2.1 38 134-177 50-87 (389)
150 PRK12282 tryptophanyl-tRNA syn 43.6 21 0.00046 37.4 3.2 39 134-178 6-44 (333)
151 COG4746 Uncharacterized protei 41.5 69 0.0015 25.8 4.9 71 8-80 1-78 (80)
152 cd01134 V_A-ATPase_A V/A-type 41.0 4.7E+02 0.01 27.8 13.5 130 70-215 171-303 (369)
153 PRK12284 tryptophanyl-tRNA syn 40.3 24 0.00051 38.2 3.0 40 134-177 6-45 (431)
154 PRK00927 tryptophanyl-tRNA syn 40.0 17 0.00037 38.0 1.9 40 134-179 5-44 (333)
155 PRK12556 tryptophanyl-tRNA syn 35.2 26 0.00057 36.7 2.4 40 134-177 7-46 (332)
156 TIGR02855 spore_yabG sporulati 33.7 1.6E+02 0.0035 29.9 7.4 128 257-408 121-260 (283)
157 PF00975 Thioesterase: Thioest 31.4 42 0.0009 32.2 3.0 32 145-176 71-102 (229)
158 PF08373 RAP: RAP domain; Int 31.1 37 0.00081 25.3 2.0 35 140-174 4-40 (58)
159 COG0180 TrpS Tryptophanyl-tRNA 28.7 36 0.00078 35.3 2.0 40 131-176 7-46 (314)
160 KOG2713 Mitochondrial tryptoph 28.4 20 0.00044 36.3 0.2 56 336-398 154-218 (347)
161 cd02156 nt_trans nucleotidyl t 26.3 29 0.00063 29.5 0.8 15 135-150 4-18 (105)
162 COG1656 Uncharacterized conser 24.7 54 0.0012 30.7 2.2 25 151-176 13-37 (165)
163 cd05212 NAD_bind_m-THF_DH_Cycl 24.5 95 0.0021 28.2 3.8 34 125-172 26-59 (140)
164 PF01927 Mut7-C: Mut7-C RNAse 23.7 61 0.0013 29.6 2.4 24 152-176 8-31 (147)
165 PRK09620 hypothetical protein; 22.7 1.5E+02 0.0032 29.3 5.1 44 126-172 2-50 (229)
166 PF09456 RcsC: RcsC Alpha-Beta 21.3 69 0.0015 27.0 2.0 25 148-172 6-30 (92)
No 1
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=4.7e-123 Score=1021.53 Aligned_cols=519 Identities=81% Similarity=1.296 Sum_probs=473.0
Q ss_pred ccccc-cCCCCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCceeeEEecCCeEEEEeCHHHHHHHHHHH
Q 008743 35 PLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKM 113 (555)
Q Consensus 35 ~~~~~-~~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~v~gpGfiN~~l~~~~~~~~~~~~ 113 (555)
+.+++ |+++|||||||+||.|||.++++|++.++|++||++|++.|...++|++|+++|||||||+|++.++.+.+..+
T Consensus 23 ~~i~~~~~~~~GD~a~n~a~~lak~~~~~~~~~k~P~~iA~~i~~~l~~~~~i~~v~vagpGfiNf~l~~~~l~~~l~~~ 102 (576)
T PLN02286 23 PLVAACTNPKFGDYQCNNAMGLWSKLKGKGTSFKNPRAVAQAIVKNLPASEMIESTSVAGPGFVNVRLSASWLAKRIERM 102 (576)
T ss_pred eEEecCCCCCCCCcccchHHHHHHHhCccccccCCHHHHHHHHHHhCccccceeeEEEcCCCeEEEEECHHHHHHHHHHH
Confidence 44554 47899999999999999999988888899999999999999877789999999999999999999999999988
Q ss_pred HHcCCCCCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCC
Q 008743 114 LVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFP 193 (555)
Q Consensus 114 ~~~~~~~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~ 193 (555)
+..+..++.+..++++|+||||||||||||||||+|||||||+|||||+++||+|+|+|||||||+||++++.++...+|
T Consensus 103 ~~~~~~~g~~~~~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~ 182 (576)
T PLN02286 103 LVDGIDTWAPTLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFP 182 (576)
T ss_pred HHcCcccCCCCCCCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcC
Confidence 87664433333456899999999999999999999999999999999999999999999999999999999988766677
Q ss_pred CCCCCCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeccc
Q 008743 194 NSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES 273 (555)
Q Consensus 194 ~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~es 273 (555)
+...+.+.++.++..+|+++++.++.+|++++++++.+.+||+||+++.++|++++++++.+|+++|++|||+||..+||
T Consensus 183 ~~~~~~~~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~ges 262 (576)
T PLN02286 183 NWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEKGES 262 (576)
T ss_pred cccccCcccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCch
Confidence 65445667899998999999999999999999999999999999999999999999999999999999999999877899
Q ss_pred ccCCcHHHHHHHHHhCCCeeeecceEEEEecCCCCCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccH
Q 008743 274 FYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHF 353 (555)
Q Consensus 274 ~~~~~~~~v~~~L~~~g~~~~~dGa~~~~~~g~~~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf 353 (555)
+|.+.++++++.|+++|+++++|||+|+++++.+.|+||+|||||+||+|+|||||+||++.+++|++|||||++|+.||
T Consensus 263 ~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l~~~~~~~vl~ksDGt~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf 342 (576)
T PLN02286 263 FYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHF 342 (576)
T ss_pred hhhhhHHHHHHHHHHCCCEEeeCCceEeeccCCCCceEEEECCCchhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHHH
Confidence 99988999999999999999999999999887667899999999999999999999999987899999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 008743 354 DMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQ 433 (555)
Q Consensus 354 ~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~ 433 (555)
+||+++++++|+.++ ++..++.|+.||||++.+|+|||||+|++|+|+||+++++.+|.+.+.+|++.+.+++++.++
T Consensus 343 ~~v~~~l~~lG~~~~--~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~ 420 (576)
T PLN02286 343 DMVFKAAKRAGWLPE--DTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQ 420 (576)
T ss_pred HHHHHHHHHcCCCcc--ccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHH
Confidence 999999999998521 113579999999998888999999999999999999999999999999987667789999999
Q ss_pred HHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHH
Q 008743 434 TAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGL 513 (555)
Q Consensus 434 ~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~ 513 (555)
+|+.+|++|+||++|++++.++++|||+++++++|||+|||||||||+||||||++.........+...+.++.|++|++
T Consensus 421 ~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~ 500 (576)
T PLN02286 421 AAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGL 500 (576)
T ss_pred HHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986432111111123466899999999
Q ss_pred HHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccccCC
Q 008743 514 HLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 555 (555)
Q Consensus 514 ~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~Vl 555 (555)
.|++||++|..|+++++||.||.||++||+.||+||++||||
T Consensus 501 ~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~~Vl 542 (576)
T PLN02286 501 HLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCKVN 542 (576)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcCccC
Confidence 999999999999999999999999999999999999999996
No 2
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-123 Score=1006.45 Aligned_cols=526 Identities=36% Similarity=0.589 Sum_probs=464.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCcee
Q 008743 10 NVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIES 88 (555)
Q Consensus 10 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~ 88 (555)
++++++++.|.++|.++........+.+++| +++||||+||+||.|||.++ +||++||++|++.|+.++.|++
T Consensus 2 ~i~~~l~~~i~~~l~~~~~~~~~~~~~ve~~~~~~~GD~a~n~a~~laK~~~------~~P~eiA~~i~~~l~~~~~~~~ 75 (577)
T COG0018 2 NIKQLLKEKIAEALSAAGLDVEEIEILVEPPKDPEHGDFATNIAFQLAKKLG------KNPREIAEEIAEKLDTDEIIEK 75 (577)
T ss_pred CHHHHHHHHHHHHHHHhhccccccccceecCCCCCcccccchHHHHHhhhcC------CCHHHHHHHHHHhccccCcEeE
Confidence 4556666667777766531112234556654 78999999999999999999 9999999999999988778999
Q ss_pred eEEecCCeEEEEeCHHHHHHHHHHHHHcCCC-C-CCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCC
Q 008743 89 CSVAGPGFVNVVLSKNWMAKNIQKMLVDGIE-T-WAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNV 166 (555)
Q Consensus 89 v~v~gpGfiN~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~ 166 (555)
|+++|||||||+|++.++.+.+.+++.+++. + ....++|++|+||||||||||||||||+|||||||+|||+|+++||
T Consensus 76 veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy 155 (577)
T COG0018 76 VEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGY 155 (577)
T ss_pred EEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999976433 3 4455788999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHHhcccCCChHHH-HHHHHHHHHHccCCHHHHHHH
Q 008743 167 EVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFK-ERAQQAVVRLQSGEPKYHEAW 245 (555)
Q Consensus 167 ~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~-~~~~~~~~~le~gd~~~~~~w 245 (555)
+|+|+|||||||+||++++.++.....+.......++..+.++|+++++.++.+|+.. +++++.+.++|.||+++ ++|
T Consensus 156 ~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~-~lw 234 (577)
T COG0018 156 DVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEA-ELW 234 (577)
T ss_pred CeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHH-HHH
Confidence 9999999999999999999887665543221123457778889999998888777643 78999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHcCCeee-e--ecccccCCcHHHHHHHHHhCCCeeeecceEEEEec-----CCCCCeEEEecCC
Q 008743 246 AQICEISRKEFDKVYKRLRVDLE-E--KGESFYNPYIPGVIDELSKQGLVEESQGARVIFIE-----GVNIPLIIVKSDG 317 (555)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Lgi~f~-~--~~es~~~~~~~~v~~~L~~~g~~~~~dGa~~~~~~-----g~~~d~vl~ksDG 317 (555)
+++++.++.+++++|++|||+|| | ++|++|++.++++++.|+++|++|+++||+|+++. |+++|+||+||||
T Consensus 235 ~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd~~~~vl~KSDG 314 (577)
T COG0018 235 RKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLKFKKFGDDKDRVLQKSDG 314 (577)
T ss_pred HHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehhhhhhcCCCCCeEEEEcCC
Confidence 99999999999999999999996 4 57889999999999999999999999999988774 7889999999999
Q ss_pred cccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccC
Q 008743 318 GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (555)
Q Consensus 318 ~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G 397 (555)
|+||+|+|||||.||++ +++|++|||||+||+.||+|++.+++++|+.++ ...+.|++||++++.+|+|||||.|
T Consensus 315 t~lY~t~DIAy~~~K~~-~~~d~~IyV~gadq~~~~~ql~~~l~~~g~~~~----~~~~~h~~~~l~~~~~g~kmStR~G 389 (577)
T COG0018 315 TYLYFTRDIAYHLYKFE-RGFDKLIYVLGADQHGHFKQLKAVLELLGYGPD----KEVLLHQGVGLVRGGEGVKMSTRAG 389 (577)
T ss_pred CeeeehhHHHHHHHHHh-cCCCEEEEEeCCcchhHHHHHHHHHHHhcCCCc----cceEEEEEEeeeECCCCccccccCC
Confidence 99999999999999995 999999999999999999999999999999641 2578999999999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHH
Q 008743 398 EVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYA 477 (555)
Q Consensus 398 ~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa 477 (555)
++|+++|+++++.++|.+.+.++ +... +++|+.+|++|+||++|+.++.++++|||+++++++|||+||||||
T Consensus 390 ~~vtl~dllde~~era~~~~~~~-~~~~------~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA 462 (577)
T COG0018 390 NVVTLDDLLDEAGERAPEEMEEK-EEKN------EEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYA 462 (577)
T ss_pred ceEEHHHHHHHHHHHhhhHhhhh-hhhh------HHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHH
Confidence 99999999999999999999876 3322 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCChhhhh-hcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccccCC
Q 008743 478 HARICSIIRKSGKDIEELK-KTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 555 (555)
Q Consensus 478 ~aR~~silrk~~~~~~~~~-~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~Vl 555 (555)
|||+|||+||++....... ..+ ..+.++.|++|+++|++||+++++|+++++||.+|.||++||+.||+||+.||||
T Consensus 463 ~ARi~SIlrka~e~~~~~~~~~~-~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~Vl 540 (577)
T COG0018 463 HARICSILRKAGEDELDLSTEAD-ALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACPVL 540 (577)
T ss_pred HHHHHHHHHhccccccccccccc-hhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhCCcC
Confidence 9999999999985311111 111 2466788999999999999999999999999999999999999999999999997
No 3
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.3e-115 Score=958.75 Aligned_cols=521 Identities=33% Similarity=0.537 Sum_probs=459.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCcccccc-cCCCCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCcee
Q 008743 10 NVKRELEKVFDLALKATVPNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIES 88 (555)
Q Consensus 10 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~ 88 (555)
.+++.|++.|.+++....+... ..+.+++ ++++||||||| +|.|||.++ ++|++||++|++.|..+ .|++
T Consensus 2 ~~~~~i~~~l~~~l~~~~~~~~-~~~~i~~~~~~~~GD~~~~-~~~lak~~~------~~P~~iA~~i~~~l~~~-~i~~ 72 (562)
T PRK12451 2 DYKTQFAESLSNIFTNELTQQQ-ILDLIETPKQDEFGDAAFP-CFSLAKQYK------KAPAIIAKEVAEKLSDP-FFTK 72 (562)
T ss_pred hHHHHHHHHHHHHHHhhccccc-cceeeecCCCCCCCcccch-HHHHHHHcC------CCHHHHHHHHHHhcccc-ccce
Confidence 4567788888888865432111 1234454 47899999999 699999999 99999999999999653 6899
Q ss_pred eEEecCCeEEEEeCHHHHHHHHH-HHHHcCCC-CCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCC
Q 008743 89 CSVAGPGFVNVVLSKNWMAKNIQ-KMLVDGIE-TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNV 166 (555)
Q Consensus 89 v~v~gpGfiN~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~ 166 (555)
|+++|| ||||+|++.++...+. .++..+.. |..+.+++++|+||||||||||||||||+|||||||+|||+|+++||
T Consensus 73 ve~~g~-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~ 151 (562)
T PRK12451 73 VEAVGP-YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGY 151 (562)
T ss_pred eEeeCC-EEEEEECHHHHHHHHHHHHHhhHhhcCCCccCCCCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCC
Confidence 999996 9999999999988754 66655544 22222457899999999999999999999999999999999999999
Q ss_pred eEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHH
Q 008743 167 EVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWA 246 (555)
Q Consensus 167 ~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~ 246 (555)
+|+|+|||||||+||++++.++ .++++.....+.++.++..+|+++++.++.+|++++++++++.+||+||+++.++|+
T Consensus 152 ~V~r~nyinD~G~Q~~~l~~~~-~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~ 230 (562)
T PRK12451 152 EVVGINYIGDWGTQFGKLITAY-KKWGNEAVVKEDPIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWN 230 (562)
T ss_pred CeEEEeeecCchHHHHHHHHHH-HHhCCccccccCchHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 9999999999999999998766 445443223556899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCeeee-ecccccCCcHHHHHHHHHhCCCeeeecceEEEEecCC-CCCeEEEecCCcccccch
Q 008743 247 QICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGV-NIPLIIVKSDGGFNYAST 324 (555)
Q Consensus 247 ~~~~~~~~~~~~~~~~Lgi~f~~-~~es~~~~~~~~v~~~L~~~g~~~~~dGa~~~~~~g~-~~d~vl~ksDG~~tY~~~ 324 (555)
.++++++++|+++|++|||+||+ .+||+|.+.++++++.|+++|+++++|||+|+++++. ++|+||+|||||+||+|+
T Consensus 231 ~~~~~~l~~~~~~~~~l~V~fD~~~~es~~~~~~~~v~~~L~~~g~~~e~dGa~~~~~~~~g~~~~vl~ksDGt~~Y~t~ 310 (562)
T PRK12451 231 WFRHESLKEFSRIYELLGVEFTNFQGEAFYNDLMEDFIGILEEHDLLEESEGALVVNLEEEGMPPCLIRKSDGATIYATR 310 (562)
T ss_pred HHHHHHHHHHHHHHHHcCCCceeecchHhhhhhHHHHHHHHHHCCCEEecCCeEEEEecccCCCceEEEeCCCccccchh
Confidence 99999999999999999999985 5789998888999999999999999999999998843 268999999999999999
Q ss_pred hHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHH
Q 008743 325 DLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 325 DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
|||||.||++.+++|++|||||+||+.||+|++++++++|+. ++.++.|+.||+|.. +|+|||||+|++|+++|
T Consensus 311 DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~-----~~~~l~h~~~g~V~~-~g~kmStR~G~~v~l~d 384 (562)
T PRK12451 311 DLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYT-----WVDGMEHVPFGLILK-DGKKMSTRKGRVVLLEE 384 (562)
T ss_pred HHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCC-----cccCeEEEeeeeEec-CCCCCcCCCCCeeEHHH
Confidence 999999999878999999999999999999999999999994 245799999999986 67799999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHHHHH
Q 008743 405 LLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSI 484 (555)
Q Consensus 405 ll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~si 484 (555)
|+++++.+|.+.+.+|++. + ++.+++|+.+|++|+||++|++++.++++|||+++++++||++|||||||||+|||
T Consensus 385 Lldea~~~a~~~~~~~~~~--l--~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SI 460 (562)
T PRK12451 385 VLEEAIELAKQNIEEKNPN--L--KQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSI 460 (562)
T ss_pred HHHHHHHHHHHHHHhhccc--c--ccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHH
Confidence 9999999999999988653 3 34778999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccccCC
Q 008743 485 IRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 555 (555)
Q Consensus 485 lrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~Vl 555 (555)
+||++.... ..+ ..+.+|.|++|+..+..||+++..++++++||.+|+|+++||..||+||+.|+||
T Consensus 461 lrka~~~~~---~~~-~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~Vl 527 (562)
T PRK12451 461 LRKESVEFE---TCT-FALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVRIL 527 (562)
T ss_pred HHhcCCCcc---ccc-cCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999863221 111 2356899999999999999999999999999999999999999999999999997
No 4
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-114 Score=869.08 Aligned_cols=546 Identities=62% Similarity=1.042 Sum_probs=511.4
Q ss_pred ccccchHhHHHHHHHHHHHHHHhcCCCCCCCcccccc-cCCCCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhhCC
Q 008743 3 TEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLP 81 (555)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~ 81 (555)
..++.|.+++.++.+++..||..++|+..++++++.| |+++|||||||.||.+++.+|+++.+. +|++||++|..+|+
T Consensus 65 ~~~~~~~ni~~~L~~lF~~aik~a~Pd~~~vp~liaps~~~kFGDYQCNnAMgl~~~lK~kg~~~-~P~~va~~l~~~lP 143 (656)
T KOG4426|consen 65 KNEKFTSNIFRRLQSLFDVAIKLAFPDLPDVPLLIAPSPNAKFGDYQCNNAMGLSSKLKGKGINK-RPRDVAQELQKHLP 143 (656)
T ss_pred cCccccccHHHHHHHHHHHHHHHhCCCCCCCCceeccCcccccccccccchhhHHHHHhhcCCcc-CcHHHHHHHHhhCC
Confidence 4457888999999999999999999965567777776 478999999999999999999988884 69999999999999
Q ss_pred CCCCceeeEEecCCeEEEEeCHHHHHHHHHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHH
Q 008743 82 PSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARML 161 (555)
Q Consensus 82 ~~~~i~~v~v~gpGfiN~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril 161 (555)
.+++|++++|+||||||++|+.+|+...+..++.+|-. .|....++|+|+|||||++|.|||||+|||||||+|||+|
T Consensus 144 ~se~vEk~~iagpGFiNv~Ls~d~~~~~i~nll~~GV~--~P~l~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~Rll 221 (656)
T KOG4426|consen 144 TSEMVEKCEIAGPGFINVFLSKDYMSKQISNLLVNGVK--LPTLSVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLL 221 (656)
T ss_pred chhhhhhhcccCCceEEEEechHHHHHHHHHHHHcCCC--CcccceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHH
Confidence 88999999999999999999999999999999877644 3444569999999999999999999999999999999999
Q ss_pred HHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHH
Q 008743 162 EFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKY 241 (555)
Q Consensus 162 ~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~ 241 (555)
++.|++|.|.||+||||+|||||+++++++||+.... .++|.+|+-.|++.+++++.|++|+++|.+.+++||.|||..
T Consensus 222 E~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~v-sp~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~ 300 (656)
T KOG4426|consen 222 EFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSV-SPPIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDI 300 (656)
T ss_pred HhcCcceEeeccccchHHHHHHHHHHHHHhCCchhcc-CCCchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChH
Confidence 9999999999999999999999999999999985543 358999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCcHHHHHHHHHhCCCeeeecceEEEEecCCCCCeEEEecCCcccc
Q 008743 242 HEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNY 321 (555)
Q Consensus 242 ~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~es~~~~~~~~v~~~L~~~g~~~~~dGa~~~~~~g~~~d~vl~ksDG~~tY 321 (555)
++.|..+|+.|..+|...|++|.|+....|||+|.+.+.+++++|+.+|++.++||+-+++.+|.+.|.+++||||..||
T Consensus 301 ~kAW~~ICdvSr~ef~kvY~rLdi~l~e~GESFYq~~m~~vveel~~kglvee~~Gr~i~f~~g~~IPLtvVKSDGGftY 380 (656)
T KOG4426|consen 301 RKAWALICDVSRKEFQKVYNRLDISLKERGESFYQDRMAEVVEELKSKGLVEEDDGRRIMFPEGCDIPLTVVKSDGGFTY 380 (656)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchHhhcchhhhhhHHHHHHHHHhcCCceeecCCceEeccCCCCcceEEEecCCCccc
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccc
Q 008743 322 ASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 401 (555)
Q Consensus 322 ~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~ 401 (555)
.|+|+|+.+||+.+..+||+|||+|..|+.||..+|++++..||.. +..++..|++||+|+|.||+|+.||.|.+|.
T Consensus 381 dtsDlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t~fkAar~~gwld---~~~~RV~HvgFGlVLGeD~KkFkTRsgetVr 457 (656)
T KOG4426|consen 381 DTSDLAALKYRLNEEKADWIIYVVDSGQSQHFNTIFKAARKAGWLD---PTYPRVEHVGFGLVLGEDKKKFKTRSGETVR 457 (656)
T ss_pred ccchHHHHHHHHHHhhcCeEEEEeeCchhHHHHHHHHHHHHcCccC---CCccceeeeeeeeEEccCcccccccccceee
Confidence 9999999999999999999999999999999999999999999973 5678999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHH
Q 008743 402 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARI 481 (555)
Q Consensus 402 l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~ 481 (555)
|.|||+|+..|+.+.+.+||+...|+|+|....++.+|-++++|.+|++.+.++|.|++|++++-.|||++|+.|||+||
T Consensus 458 L~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~tRI 537 (656)
T KOG4426|consen 458 LLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAYTRI 537 (656)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhhccCcceehhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCh----hhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccccCC
Q 008743 482 CSIIRKSGKDI----EELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 555 (555)
Q Consensus 482 ~silrk~~~~~----~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~Vl 555 (555)
|||.||.+.+. ..+.......|.++.||+|.++|.+|++.++.+.+++-||.+|+|+++||..|+.||++|-|+
T Consensus 538 cSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y~y~l~t~Ft~FY~~Cyv~ 615 (656)
T KOG4426|consen 538 CSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKALDSLFLHVLCDYLYELATLFTEFYDSCYVI 615 (656)
T ss_pred HHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccEEe
Confidence 99999998762 222233334578999999999999999999999999999999999999999999999999763
No 5
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=5.7e-107 Score=896.55 Aligned_cols=518 Identities=35% Similarity=0.558 Sum_probs=451.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcccccc-cCCCCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCceeeE
Q 008743 12 KRELEKVFDLALKATVPNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCS 90 (555)
Q Consensus 12 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~ 90 (555)
++.|++.|.+++........ ..+.+++ +++.|||||||+||.+||.++ ++|++||++|++.|...++|++|+
T Consensus 2 ~~~i~~~~~~~l~~~~~~~~-~~~~i~~~~~~~~GD~~~~~a~~lak~~~------~~P~~iA~~i~~~l~~~~~i~~ve 74 (566)
T TIGR00456 2 KTLLKDEISAALLKAGLSKE-SEILLEETPNPEFGDYASNIAFPLAKVLK------KNPRAIAEEIVLKLKTGEIIEKVE 74 (566)
T ss_pred hHHHHHHHHHHHHhcccccc-cceeeecCCCCCCCccccHHHHHHHHHcC------CCHHHHHHHHHHhCCCcCcEeEEE
Confidence 45667777777765422111 1234444 478999999999999999999 999999999999998777899999
Q ss_pred EecCCeEEEEeCHHHHHHHHH-HHHHcCCC-CCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeE
Q 008743 91 VAGPGFVNVVLSKNWMAKNIQ-KMLVDGIE-TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEV 168 (555)
Q Consensus 91 v~gpGfiN~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V 168 (555)
++|| ||||+|++.++...+. .++..+.. |..+.+ +++|+||||||||+|||||||+||+++||+|+|+|+++||+|
T Consensus 75 ~~gp-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v 152 (566)
T TIGR00456 75 AAGP-FINFFLSPQKLLERLIQKILTQKEDYGSKKLK-NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDV 152 (566)
T ss_pred EeCC-EEEEEEcHHHHHHHHHHHHHhcccccCCCCCC-CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCe
Confidence 9998 9999999988888754 66665544 222333 789999999999999999999999999999999999999999
Q ss_pred EEEeccCCchhHHHHHHHHHHhhCCCCC-CCCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHH
Q 008743 169 LRRNHVGDWGTQFGMLIEYLFEKFPNSE-DANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQ 247 (555)
Q Consensus 169 ~~~~yi~D~G~Q~~~l~~~~~~~~~~~~-~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~ 247 (555)
.|+|||||||+||++++.++.....+.. .....++.++..+|+++++.++.++++.+++++.+.+||+||+++.++|+.
T Consensus 153 ~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~ 232 (566)
T TIGR00456 153 IREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKR 232 (566)
T ss_pred eEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 9999999999999999987754433211 123457788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCeee-ee--cccccCCcHHHHHHHHHhCCCeeeecceEEEEec--CCC-CCeEEEecCCcccc
Q 008743 248 ICEISRKEFDKVYKRLRVDLE-EK--GESFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVN-IPLIIVKSDGGFNY 321 (555)
Q Consensus 248 ~~~~~~~~~~~~~~~Lgi~f~-~~--~es~~~~~~~~v~~~L~~~g~~~~~dGa~~~~~~--g~~-~d~vl~ksDG~~tY 321 (555)
++++++++|+++|++|||+|| |+ +|++|.+.++++++.|+++|++|++ ||+|++++ |++ +|+||+|||||+||
T Consensus 233 ~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~~~d~~~~~vl~ksDGt~~Y 311 (566)
T TIGR00456 233 LVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTLFGDKDKDRVLQKSDGTYLY 311 (566)
T ss_pred HHHHHHHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEcccccCCCCCeEEEECCCCcee
Confidence 999999999999999999997 65 6678899999999999999999977 99999988 455 69999999999999
Q ss_pred cchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccc
Q 008743 322 ASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 401 (555)
Q Consensus 322 ~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~ 401 (555)
+|+|||||.+|++. ++|++|||||+||+.||+|++++++++|++ .+.++.|++||+|.+ .|||||+||+|+
T Consensus 312 ~t~DiA~~~~k~~~-~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~-----~~~~l~h~~~~~V~~---~kmSkr~Gn~V~ 382 (566)
T TIGR00456 312 LTRDIAYHLDKLER-GFDKMIYVWGSDHHLHIAQFFAILEKLGFY-----KKKELIHLNFGMVPL---GSMKTRRGNVIS 382 (566)
T ss_pred chhhHHHHHHHHhc-CCCEEEEEecCcHHHHHHHHHHHHHHcCCC-----CCCceEEEEEEEEEC---CCCCccCCceee
Confidence 99999999999964 999999999999999999999999999984 345899999999985 479999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHH
Q 008743 402 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARI 481 (555)
Q Consensus 402 l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~ 481 (555)
++|+++++.++|.+.+.++++. +.+++++.+|++|+||++|+..+.++++|||++++++++|+++||||+|||+
T Consensus 383 ~~dll~~~~~ra~~~i~~~~~~------~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~ 456 (566)
T TIGR00456 383 LDNLLDEASKRAGNVITIKNDL------EEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARI 456 (566)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc------cHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHH
Confidence 9999999999999999988543 6678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccccCC
Q 008743 482 CSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 555 (555)
Q Consensus 482 ~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~Vl 555 (555)
|||+||++.........+ ..+.++.|+.|+..+.+||+++..++++++||.+|+|+++||..||+||+.||||
T Consensus 457 ~SIlrK~~~~~~~~~~~~-~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~~Vl 529 (566)
T TIGR00456 457 CSILRKADIDGEKLIADD-FSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKACPVL 529 (566)
T ss_pred HHHHHhcccccccccccc-cCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCccC
Confidence 999999864321111111 2234788999999999999999999999999999999999999999999999997
No 6
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.6e-97 Score=808.37 Aligned_cols=460 Identities=36% Similarity=0.555 Sum_probs=403.4
Q ss_pred hHhHHHHHHHHHHHHHHhcCCCCCCCccccc-ccCCCCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCc
Q 008743 8 TGNVKRELEKVFDLALKATVPNETDVRPLIA-ACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMI 86 (555)
Q Consensus 8 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i 86 (555)
|+++++.|++.+.+++......... ...++ ||++++|||+||+||.+||.++ ++|++||++|++. |
T Consensus 2 ~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~gd~~~~~a~~lak~~~------~~p~~ia~~i~~~------i 68 (507)
T PRK01611 2 MMDIKELLAEALAAALEAGGLPELP-AVLIERPKDPEHGDYATNVAMQLAKKLK------KNPREIAEEIVEA------I 68 (507)
T ss_pred hHHHHHHHHHHHHHHHHhccccccc-cceeecCCCCCccCeecHHHHHHHHHcC------CCHHHHHHHHHhh------e
Confidence 5578888999998888654221110 12344 4578999999999999999999 9999999999985 7
Q ss_pred eeeEEecCCeEEEEeCHHHHHHHHHHHHHcCCC-CCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCC
Q 008743 87 ESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIE-TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN 165 (555)
Q Consensus 87 ~~v~v~gpGfiN~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G 165 (555)
++|+++|||||||+|++.++.+.+.+++..+.. |..+.+++++|+||||||||+|||||||+|++++||+|+|+|+++|
T Consensus 69 ~~v~~~~~gfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G 148 (507)
T PRK01611 69 EKVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAG 148 (507)
T ss_pred eEEEEeCCCEEEEEECHHHHHHHHHHHHhchhhcCCCcCCCCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999888765544 3333356889999999999999999999999999999999999999
Q ss_pred CeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHH
Q 008743 166 VEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAW 245 (555)
Q Consensus 166 ~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w 245 (555)
|+|.++||+||||+|+++++... ...|
T Consensus 149 ~~V~~~~~i~D~G~qi~~~a~~~-----------------------------------------------------~~~~ 175 (507)
T PRK01611 149 YDVTREYYVNDAGTQIGMLIASL-----------------------------------------------------ELLW 175 (507)
T ss_pred CcEEEEeeeCCccHHHHHHHHHH-----------------------------------------------------HHHH
Confidence 99999999999999999875321 0168
Q ss_pred HHHHHHHHHHHHHHHHHcCCeee-eecc--cccCCcHHHHHHHHHhCCCee-eecceEEEEec--CCCCCeEEEecCCcc
Q 008743 246 AQICEISRKEFDKVYKRLRVDLE-EKGE--SFYNPYIPGVIDELSKQGLVE-ESQGARVIFIE--GVNIPLIIVKSDGGF 319 (555)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Lgi~f~-~~~e--s~~~~~~~~v~~~L~~~g~~~-~~dGa~~~~~~--g~~~d~vl~ksDG~~ 319 (555)
+++++.+++.|+++|++|||+|| |.+| +.+.+.++++++.|+++|++| +++|++||+++ |+++|+||+||||++
T Consensus 176 ~~~~~~~~~~~~~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~~ 255 (507)
T PRK01611 176 RKAVDISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGTY 255 (507)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCCc
Confidence 88999999999999999999996 5544 466789999999999999999 99999999987 566799999999999
Q ss_pred cccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCc
Q 008743 320 NYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (555)
Q Consensus 320 tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~ 399 (555)
||+|+|||||.||++. +|++|||||++|+.||++++.+++++|+.+ +....+.|+.||+|++++|+|||||+||+
T Consensus 256 ~Y~t~Dia~~~~k~~~--~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~---~~~~~~~h~~~glv~~~~g~KMSkR~Gn~ 330 (507)
T PRK01611 256 TYFTRDIAYHLYKFER--FDRVIYVVGADHHGHFKRLKAALKALGYDP---DALEVLLHQMVGLVRGGEGVKMSTRAGNV 330 (507)
T ss_pred cchHHHHHHHHHHHhh--cCEEEEEECCChHHHHHHHHHHHHHcCCCc---ccceEEEEEEEEeeECCCCCcccCCCCce
Confidence 9999999999999954 899999999999999999999999999853 11234899999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHH
Q 008743 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHA 479 (555)
Q Consensus 400 v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~a 479 (555)
|+++||+++++.+|.+.+.++ ++|+++|++|+||++|+.++.++++|||++++++++++++|+||+|+
T Consensus 331 i~l~dll~~a~g~~~~~~~~~------------~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa~a 398 (507)
T PRK01611 331 VTLDDLLDEAVGRARELIEEK------------EIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHA 398 (507)
T ss_pred eEHHHHHHHHHHHHHHHHHhh------------hhhhhhccceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHHHH
Confidence 999999999999999988765 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccccc
Q 008743 480 RICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 553 (555)
Q Consensus 480 R~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 553 (555)
|+|||++|++..... ... ..+.++.|++|+..|.+||+++.+|+++++||.+|+||++||+.||+||++||
T Consensus 399 R~~sil~k~~~~~~~--~~~-~~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~la~~f~~fY~~~~ 469 (507)
T PRK01611 399 RICSILRKAAEAGID--LLL-ALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRVL 469 (507)
T ss_pred HHHHHHHhhhccCcc--ccc-cccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999997532100 001 12457899999999999999999999999999999999999999999999887
No 7
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-90 Score=711.57 Aligned_cols=491 Identities=31% Similarity=0.474 Sum_probs=437.5
Q ss_pred CCCCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCceeeEEecCCeEEEEeCHHHHHHHHHHHHH-cCCC
Q 008743 41 TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLV-DGIE 119 (555)
Q Consensus 41 ~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~v~gpGfiN~~l~~~~~~~~~~~~~~-~~~~ 119 (555)
+++-||...++. .++ ..+.+.|.+.++.++..+.|+++.+.|| |++|+|++..+.+.+...++ .++.
T Consensus 33 ~~~r~~~~~~lp-----~i~------~~~~~~a~~~~e~~~~~~~v~~~~~~~~-~~~f~ln~~~~~k~~l~~i~~~~~~ 100 (567)
T KOG1195|consen 33 SMDRPDLLLPLP-----RIR------VQGKEDALRWAEALPCNRIVEEVGASGP-FVQFFLNRRRLIKSVLPIIEEQREK 100 (567)
T ss_pred cCCCCCccccCc-----ccc------cCCHHHHHHHHHhcccccchHHHhcCCC-eEEEEecHHHHHHHHHHHHHHHhcc
Confidence 457788766543 233 3455999999999998889999999998 99999999999999876554 4444
Q ss_pred -CCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCC
Q 008743 120 -TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDA 198 (555)
Q Consensus 120 -~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~ 198 (555)
|....+.+++|+|||||||++||+||||+|+|+||..++|+.+..||+|++.||+||||+|||+++..+ .+++.++..
T Consensus 101 ~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~-~~~g~e~~L 179 (567)
T KOG1195|consen 101 YGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGF-QLYGDEEEL 179 (567)
T ss_pred cCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccH-HhhCchhhh
Confidence 444457789999999999999999999999999999999999999999999999999999999997543 556654445
Q ss_pred CcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eeccc-ccC
Q 008743 199 NETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES-FYN 276 (555)
Q Consensus 199 ~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~es-~~~ 276 (555)
.-+||.+|.+.|+++++..+.+++..+.+++.+.+||.||.+++++|++|++.+.+++.++|+||||+|| |.+|| .++
T Consensus 180 ~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gESqv~~ 259 (567)
T KOG1195|consen 180 QLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGESQVSN 259 (567)
T ss_pred ccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeeccchHHHHH
Confidence 6799999999999999988888899999999999999999999999999999999999999999999996 88998 667
Q ss_pred CcHHHHHHHHHhCCCeeeecceEEEEecCCCC---CeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccH
Q 008743 277 PYIPGVIDELSKQGLVEESQGARVIFIEGVNI---PLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHF 353 (555)
Q Consensus 277 ~~~~~v~~~L~~~g~~~~~dGa~~~~~~g~~~---d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf 353 (555)
+.++.+++.+++.|++.+.||++|+++++.++ -.+++|||||++|.|||||+++.|..++.+|++|||++..|..||
T Consensus 260 e~~~~~~d~~rs~~l~~e~dG~~vidL~~~~~~~~~~~V~ksdgttLYltRdiaaal~Rl~~y~fdr~iYVvd~~Q~~hf 339 (567)
T KOG1195|consen 260 EKMQEALDLLRSANLTEEIDGTIVIDLSKIDKKAGKAVVQKSDGTTLYLTRDIAAALDRLEKYSFDRLIYVVDSQQKDHF 339 (567)
T ss_pred HHHHHHHHHHHhcCCcccCCCcEEEEecccCcccceEEEEcCCCceehHHHHHHHHHHHHHhcCcceEEEEechHHHHHH
Confidence 88999999999999999999999999985443 467899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 008743 354 DMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQ 433 (555)
Q Consensus 354 ~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~ 433 (555)
.++|.+++++|+ +|+.+++||.||+|.+ ||||+|+++.++|+++++.+.+.+.|...... ....++.++
T Consensus 340 ~~lf~ilk~mg~-----~~a~~~qHV~~G~v~G-----msTRkG~~~fl~dil~e~re~m~e~M~s~~t~-~~~~~~~~~ 408 (567)
T KOG1195|consen 340 CQLFEILKKMGF-----DWAKKLQHVNFGRVQG-----MSTRKGKVVFLDDILEEAREQMLEVMASNKTK-PVQMANPDE 408 (567)
T ss_pred HHHHHHHHHhCc-----hhhhhcceeccccccc-----ccccCCceeeHHHHHHHHHHHHHHHHHhccCC-CCCCCCHHH
Confidence 999999999999 4788999999999986 99999999999999999999999999876433 566788899
Q ss_pred HHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCC-hhhhhhcCCCCCCcHHHHHHH
Q 008743 434 TAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKD-IEELKKTGSLVLDHADERALG 512 (555)
Q Consensus 434 ~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~-~~~~~~~~~~~l~~~~e~~L~ 512 (555)
+|+.+|++|+.+.+++..+.++|.|+|+++.+++|+||+|+||+|+|+.|++||...- .+.+...+...+.+|....|+
T Consensus 409 vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~~~~~~l~~~d~~~l~ep~~~~Lv 488 (567)
T KOG1195|consen 409 VADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSDVTLDDLDEIDFSLLTEPDALLLV 488 (567)
T ss_pred HHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhccccCchhhhccchhhcCChhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998742 222223344557788877899
Q ss_pred HHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccccCC
Q 008743 513 LHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 555 (555)
Q Consensus 513 ~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~Vl 555 (555)
..|.+||++++.++++++|+.++.||+.||++++++|..-+|+
T Consensus 489 ~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~l~V~ 531 (567)
T KOG1195|consen 489 RLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKILWVK 531 (567)
T ss_pred HHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHhheeec
Confidence 9999999999999999999999999999999999999988774
No 8
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=100.00 E-value=8.8e-78 Score=628.56 Aligned_cols=340 Identities=38% Similarity=0.585 Sum_probs=283.8
Q ss_pred HHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHH
Q 008743 110 IQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF 189 (555)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~ 189 (555)
|.+++.+++.+....+++++|+||||||||||||||||+||++|||+|||||+++||+|+++|||||||+||++++.++.
T Consensus 2 i~~il~~~~~y~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~ 81 (354)
T PF00750_consen 2 INEILEKGEEYGSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYK 81 (354)
T ss_dssp HHHHHHHGGGTT--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHH
T ss_pred HHHHHhcchhcccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHH
Confidence 56777777665344578999999999999999999999999999999999999999999999999999999999987765
Q ss_pred hhCCCCCCCCcccHHHHHHHHHHHhcccCC-------ChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008743 190 EKFPNSEDANETAIGELQEFYRRSKNRFDS-------DPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKR 262 (555)
Q Consensus 190 ~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~-------~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~ 262 (555)
....+. ....+++.++.+.|...+..... .+++.+++++.+.++|+|+++..+.|++. +++..+++|++
T Consensus 82 ~~~~~~-~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~---~~~~~k~~l~~ 157 (354)
T PF00750_consen 82 KFGDEE-LLEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKY---ILEWSKETLQR 157 (354)
T ss_dssp HHHHHH-TSHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHH---HHHHHHHHHHH
T ss_pred hhhhhh-hcccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHH---HHHHHHHHHHH
Confidence 432211 11346788888888876654322 23488999999999999999999999771 34455668889
Q ss_pred cCCeee-ee--cccccCCcHHHHHHHHHhCCCeeeecceEEEEec--CCCCCeEEEecCCcccccchhHHHHHHHhhhcC
Q 008743 263 LRVDLE-EK--GESFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEK 337 (555)
Q Consensus 263 Lgi~f~-~~--~es~~~~~~~~v~~~L~~~g~~~~~dGa~~~~~~--g~~~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~ 337 (555)
|+|.|| |+ +||+|.+.++++++.|+++|+++++|||+|++++ |+++|+||+|||||+||+|||||||++|+..++
T Consensus 158 l~i~fDv~~~E~Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i~~~~~g~~k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~~ 237 (354)
T PF00750_consen 158 LYIRFDVWFDESESFYSGKVDEVLERLKEKGLLYESDGALWIDLTKFGDDKDRVLRKSDGTSTYLTRDIAYHLYRFEEYG 237 (354)
T ss_dssp TT---SEEEEHCHHHHTTHHHHHHHHHHCTTTEEEETTEEEEEGCCTSTSS-EEEEETTSEB-HHHHHHHHHHHHHCCSS
T ss_pred HHHHhCcCcccchhhhhhHHHHHHHHHHhCCcEEecCCcEEEechhcCCCCcceEEcCCCceEEEcchHHHHHHHHhhhc
Confidence 999985 55 7788999999999999999999999999999998 888999999999999999999999999998899
Q ss_pred CCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCc-cceeccCCccchHHHHHHHHHHHHHH
Q 008743 338 AEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVDLLDEAKNRSKAV 416 (555)
Q Consensus 338 ~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~-kmSkR~G~~v~l~dll~e~~~~a~~~ 416 (555)
+|++|||||++|+.||+|++++++++|+.+ ...++.|++||+|++++|+ |||||+|++|+|+|||+++.++|.+
T Consensus 238 ~d~~iyV~~~~q~~hf~~l~~~l~~lg~~~----~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~~a~~- 312 (354)
T PF00750_consen 238 FDKIIYVVGADQKGHFKQLFAILEALGYDP----EAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVERALE- 312 (354)
T ss_dssp -SEEEEEEEGGGHHHHHHHHHHHHHTT-HH----HHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHHHHHH-
T ss_pred cccEEEEecCchhhHHHHHHHHHHHhCCCC----CCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999853 3678999999999999998 9999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccc
Q 008743 417 LIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSF 460 (555)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~ 460 (555)
+.++++. +++++.+++|+++|++|+||++|++++.++++|||
T Consensus 313 ~~~~~~~--~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 313 IMEKNPD--LSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp HHHHHTT--CTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred HHhcccC--CChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 7776544 89999999999999999999999999999999998
No 9
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=100.00 E-value=3.5e-54 Score=420.59 Aligned_cols=209 Identities=36% Similarity=0.551 Sum_probs=193.5
Q ss_pred eEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHH
Q 008743 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (555)
Q Consensus 129 ~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (555)
+|+||||||||+||+||||+||+++||+|+|+|+++||+|.++||+||||.||++++...
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-------------------- 60 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-------------------- 60 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH--------------------
Confidence 589999999999999999999999999999999999999999999999999998775321
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eecccccCCcHHHHHHHHH
Q 008743 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELS 287 (555)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~es~~~~~~~~v~~~L~ 287 (555)
..|+++++.+.+.|.++|++|||+|| |.+||.+.+.+.++++.|+
T Consensus 61 ----------------------------------~~~~~~~~~~~~~~~~~~~~L~i~~d~~~~es~~~~~~~~~i~~L~ 106 (212)
T cd00671 61 ----------------------------------EKWRKLVEESIKADLETYGRLDVRFDVWFGESSYLGLMGKVVELLE 106 (212)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHhCCcCceecchhhhhhHHHHHHHHHH
Confidence 11788999999999999999999996 7789888888999999999
Q ss_pred hCCCeeeecceEEEEec--CCCCCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCC
Q 008743 288 KQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGW 365 (555)
Q Consensus 288 ~~g~~~~~dGa~~~~~~--g~~~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~ 365 (555)
++|++|+.+|++|++++ ++.+|+||+||||++||.|+|||++++|+. +++|++|||+|+||..||++++.+++++|+
T Consensus 107 ~~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~-~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~ 185 (212)
T cd00671 107 ELGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFE-RGADKIIYVVGADHHGHFKRLFAALELLGY 185 (212)
T ss_pred HCCCEEEeCCcEEEechhhCCCCCeEEEECCCCccchHHHHHHHHHHHh-cCCCEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999987 456799999999999999999999999995 899999999999999999999999999999
Q ss_pred CCCCCCCCCcEEEEEeeEEECCCCccceeccC
Q 008743 366 LSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (555)
Q Consensus 366 ~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G 397 (555)
. +++++.|++||+|.+++|+|||||+|
T Consensus 186 ~-----~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 186 D-----EAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred C-----CCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 4 34689999999999988999999998
No 10
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.97 E-value=1.8e-30 Score=288.90 Aligned_cols=323 Identities=16% Similarity=0.190 Sum_probs=239.1
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHH-HCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHH
Q 008743 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~-~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (555)
.+.+|-+..|+|.+..+.||||+|+.|..|+|+|+|+ +.||+|..+..++|.|-.|-
T Consensus 57 ~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi---------------------- 114 (651)
T PTZ00399 57 NGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKII---------------------- 114 (651)
T ss_pred CCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHH----------------------
Confidence 4678999999999999999999999999999999999 99999999999999765332
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeecc-cccCCcHHHH
Q 008743 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGV 282 (555)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-~~~~e-s~~~~~~~~v 282 (555)
.++.+. | +..|+++++.+...|.+++++|||.. ++.+- +.|.+.+.++
T Consensus 115 ------~~A~~~--------------------g----~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~ 164 (651)
T PTZ00399 115 ------KRAREE--------------------K----LSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDF 164 (651)
T ss_pred ------HHHHHh--------------------C----CCcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHHHH
Confidence 111110 0 01145667777889999999999997 54433 6777789999
Q ss_pred HHHHHhCCCeeeecceEEEEecCCC---------CC-----eEEEecCCc--------ccccchhHHHHHHHhhh-----
Q 008743 283 IDELSKQGLVEESQGARVIFIEGVN---------IP-----LIIVKSDGG--------FNYASTDLAALWYRLNE----- 335 (555)
Q Consensus 283 ~~~L~~~g~~~~~dGa~~~~~~g~~---------~d-----~vl~ksDG~--------~tY~~~DiA~~~~r~~~----- 335 (555)
++.|.++|++|+.+|.++|++.... .| .... ..|. -.=...|+| +|+...
T Consensus 165 i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg~L~p~~~~~~~~~-~~g~~~l~~~~~~Kr~~~DFa--LWk~~kpgep~ 241 (651)
T PTZ00399 165 IQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPESVADEDRI-AEGEGALGKVSGEKRSPNDFA--LWKASKPGEPS 241 (651)
T ss_pred HHHHHHCCCEEEECCeEEEEchhcccchhhHHhhChhhcCCHHHH-hcccCCccccCcCCCCCccHH--hhCCCCCCCCC
Confidence 9999999999999999999876221 00 0000 0111 111234555 454311
Q ss_pred -----------------------cCCCeEEEEeeCCccccHHH---HHHHHHH-cCCCCCCCCCCCcEEEEEeeEEECCC
Q 008743 336 -----------------------EKAEWIIYVTDVGQQLHFDM---VFSAAKR-AGWLSADDSTYPKASHVGFGLVLGED 388 (555)
Q Consensus 336 -----------------------~~~d~iI~V~g~dq~~hf~~---~~~~l~~-lG~~~~~~~~~~~~~Hv~~g~v~~~~ 388 (555)
.++ -++|.+.+..+.|++ -.+..++ .|-. +|+..+.|. |+|. -+
T Consensus 242 W~SpwG~GrPGWHiECsam~~~~lg~--~~DIh~gG~DL~FPHHeNEiAQseA~~~~~----~~v~y~~H~--G~L~-i~ 312 (651)
T PTZ00399 242 WDSPWGKGRPGWHIECSAMASNILGD--PIDIHSGGIDLKFPHHDNELAQSEAYFDKH----QWVNYFLHS--GHLH-IK 312 (651)
T ss_pred CCCCCCCCCCCchHHHHHHHHHHcCC--cceeeccCCCCCCCcchhHHHHHHHhhCCC----CCCcEEEEE--EEEE-ec
Confidence 122 144555444443443 2222233 3432 477789998 5566 57
Q ss_pred CccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccC
Q 008743 389 GKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 468 (555)
Q Consensus 389 G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~ 468 (555)
|+|||||+||+|++.|+|++ +|++++|||+|+.++.++++|+++.+.+..+
T Consensus 313 G~KMSKSLGNfItp~dlLek-----------------------------ygaDaLR~~lLs~~~~~dldFS~e~l~~a~~ 363 (651)
T PTZ00399 313 GLKMSKSLKNFITIRQALSK-----------------------------YTARQIRLLFLLHKWDKPMNYSDESMDEAIE 363 (651)
T ss_pred cchhhhcCCCcccHHHHHHH-----------------------------cChHHHHHHHHhcCCCCCCccCHHHHHHHHH
Confidence 88999999999999999998 7999999999999899999999999877766
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHH-HhcchHHHHHHHHHHHHHHhc
Q 008743 469 NTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL-TNLLPNVVCEYLYNLSEYFTR 547 (555)
Q Consensus 469 n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~-~~~~p~~l~~yl~~La~~fn~ 547 (555)
....|.+| ++|+++++++.... . ...+ .+.+++|+..+..+++.+..|+ ++++|+.++.+|++|+..+|+
T Consensus 364 ~~~~l~n~-~~rl~s~l~~~~~~-----~--~~~~-~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~~~N~ 434 (651)
T PTZ00399 364 KDKVFFNF-FANVKIKLRESELT-----S--PQKW-TQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLISATNT 434 (651)
T ss_pred HHHHHHHH-HHHHHHHHhhcccc-----c--cccC-CHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 55667777 89999988764311 0 1112 4667889999999999999998 779999999999999999999
Q ss_pred ccc
Q 008743 548 FYS 550 (555)
Q Consensus 548 fY~ 550 (555)
||+
T Consensus 435 yi~ 437 (651)
T PTZ00399 435 YLN 437 (651)
T ss_pred HHh
Confidence 996
No 11
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=2.1e-30 Score=285.34 Aligned_cols=329 Identities=18% Similarity=0.178 Sum_probs=235.2
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHH
Q 008743 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (555)
++++|--+-|+|+|++||||+|+.++.|+++|.++..|++|..+..++|+|..+-.-+.. .
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~-----------~-------- 61 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE-----------A-------- 61 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHH-----------c--------
Confidence 467888999999999999999999999999999999999999999999999865422110 0
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-ecc--cccCCcHHHHHH
Q 008743 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGE--SFYNPYIPGVID 284 (555)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~-~~e--s~~~~~~~~v~~ 284 (555)
..+| +++++.+...|++++++|||.+|. ... ..+.+.++++++
T Consensus 62 ----------g~~~------------------------~~~~~~~~~~~~~~l~~l~I~~D~~~~t~~~~~~~~v~~~~~ 107 (511)
T PRK11893 62 ----------GISP------------------------QELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQ 107 (511)
T ss_pred ----------CCCH------------------------HHHHHHHHHHHHHHHHHhCCCcCCceeCCCHHHHHHHHHHHH
Confidence 0111 345677788899999999999973 333 346788999999
Q ss_pred HHHhCCCeeeecceEEEEec-C----------------------------------------------------------
Q 008743 285 ELSKQGLVEESQGARVIFIE-G---------------------------------------------------------- 305 (555)
Q Consensus 285 ~L~~~g~~~~~dGa~~~~~~-g---------------------------------------------------------- 305 (555)
.|.++|++|+.++.+++... +
T Consensus 108 ~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~ 187 (511)
T PRK11893 108 RLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRR 187 (511)
T ss_pred HHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHH
Confidence 99999999987664444221 0
Q ss_pred ---------CCCCeEEEecCC-----------cccccchh--HHHH---HH---------Hhh-hcCCCeEEEEeeCCcc
Q 008743 306 ---------VNIPLIIVKSDG-----------GFNYASTD--LAAL---WY---------RLN-EEKAEWIIYVTDVGQQ 350 (555)
Q Consensus 306 ---------~~~d~vl~ksDG-----------~~tY~~~D--iA~~---~~---------r~~-~~~~d~iI~V~g~dq~ 350 (555)
...|..|-|++. ...|+--| ++|. -+ .+. -|..| +++.|.|+.
T Consensus 188 ~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D--~~~~G~D~~ 265 (511)
T PRK11893 188 NEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPAD--VHLIGKDIL 265 (511)
T ss_pred HHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCc--ceEeccccc
Confidence 001222333111 01111111 1110 00 010 12233 355666665
Q ss_pred c-cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 008743 351 L-HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEE 429 (555)
Q Consensus 351 ~-hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~ 429 (555)
. |..-...++.++|.. ++..+.| +|+|+. +|+|||||+||+|++.|++++
T Consensus 266 ~~h~~~~~a~~~a~~~~-----~p~~~~~--~g~v~~-~G~KMSKS~GN~i~~~dll~~--------------------- 316 (511)
T PRK11893 266 RFHAVYWPAFLMAAGLP-----LPKRVFA--HGFLTL-DGEKMSKSLGNVIDPFDLVDE--------------------- 316 (511)
T ss_pred ccchhHHHHHHHhCCCC-----CCCEEEe--eccEEE-CCeeecccCCcEEcHHHHHHH---------------------
Confidence 4 222233555666653 3334444 588885 799999999999999999998
Q ss_pred HHHHHHHhhhhhhHHHhhhccCC-CCCcccccccccc-ccCChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHH
Q 008743 430 ELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLN-DKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHAD 507 (555)
Q Consensus 430 ~~~~~a~~vg~~airy~~L~~~~-~~~~~Fd~~~~~~-~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~ 507 (555)
+|+|++||++++..+ .++++|+++.+.. .+++.+++++|.++|+.+++++...+. ++.. ..+ .+.
T Consensus 317 --------~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~--~~~~--~~~-~~~ 383 (511)
T PRK11893 317 --------YGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGK--VPEP--GAL-TEA 383 (511)
T ss_pred --------cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCC--ccc-chh
Confidence 799999999999865 8999999999865 467788999999999999998764321 1111 112 455
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccccc
Q 008743 508 ERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 553 (555)
Q Consensus 508 e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 553 (555)
++.|+..+..+++.+.+++++++|+.++.++++++..+|.|++.++
T Consensus 384 d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~ 429 (511)
T PRK11893 384 DEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQA 429 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6789999999999999999999999999999999999999998653
No 12
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.97 E-value=3.5e-30 Score=284.47 Aligned_cols=328 Identities=17% Similarity=0.193 Sum_probs=232.5
Q ss_pred EEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHH
Q 008743 131 VVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFY 210 (555)
Q Consensus 131 ~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y 210 (555)
+|.-.-|||+|++||||+|+.++.|+|+|.++..|++|..+..++|.|..+...+.
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~------------------------ 57 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAE------------------------ 57 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHH------------------------
Confidence 46678899999999999999999999999999999999999999998875532210
Q ss_pred HHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec---ccccCCcHHHHHHHHH
Q 008743 211 RRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVIDELS 287 (555)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~---es~~~~~~~~v~~~L~ 287 (555)
+ ...+ ++++++.+.+.|+++|++|||.+|++. ++.|.+.+++++++|.
T Consensus 58 ----~-~g~~------------------------~~e~~~~~~~~~~~~l~~LgI~~D~~~~t~~~~~~~~v~~~~~~L~ 108 (530)
T TIGR00398 58 ----Q-EGLT------------------------PKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLK 108 (530)
T ss_pred ----H-cCCC------------------------HHHHHHHHHHHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHH
Confidence 0 0011 235678888999999999999997542 4567788999999999
Q ss_pred hCCCeeeecceEEEEec-----------CC----------------------------------CCCeE-----------
Q 008743 288 KQGLVEESQGARVIFIE-----------GV----------------------------------NIPLI----------- 311 (555)
Q Consensus 288 ~~g~~~~~dGa~~~~~~-----------g~----------------------------------~~d~v----------- 311 (555)
++|++|+.++.+++... |. ..+.+
T Consensus 109 ~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l 188 (530)
T TIGR00398 109 ENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDSEHYFFRL 188 (530)
T ss_pred HCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCCHHHhcCCccccCCCcceEEecceEEEEh
Confidence 99999987765555321 10 00000
Q ss_pred ----------------------------------------EEe-cC----------Ccccccchh--HHHHH---H----
Q 008743 312 ----------------------------------------IVK-SD----------GGFNYASTD--LAALW---Y---- 331 (555)
Q Consensus 312 ----------------------------------------l~k-sD----------G~~tY~~~D--iA~~~---~---- 331 (555)
|-| .+ |...|+.-| ++|.. +
T Consensus 189 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~~~~~~yvW~da~~~y~~~~~~~~~~ 268 (530)
T TIGR00398 189 SAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPNDPNKVVYVWFDALIGYISSLGILSGD 268 (530)
T ss_pred HHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCCCCcEEEEeecchHHhHhhhccccCC
Confidence 000 00 011111111 01100 0
Q ss_pred --Hhh-hcCCC---eEEEEeeCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHH
Q 008743 332 --RLN-EEKAE---WIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 332 --r~~-~~~~d---~iI~V~g~dq~~hf~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
.+. -|+.+ .++++.|.|...+..-.+ +++.++|++ +.. .|+.+|+|+.+ |+|||||+||+|+++|
T Consensus 269 ~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~~-----~~~--~~~~~g~v~~~-g~KmSKS~Gn~i~~~d 340 (530)
T TIGR00398 269 TEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGLP-----LPT--QVFSHGYLTVE-GGKMSKSLGNVVDPSD 340 (530)
T ss_pred hhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCCC-----CCC--EEEeeccEEEC-CceecccCCceecHHH
Confidence 000 01111 234455555433222222 456778864 222 45567999866 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccC-CCCCccccccccccc-cCChhHHHHHHHHHHH
Q 008743 405 LLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLND-KGNTAVYLLYAHARIC 482 (555)
Q Consensus 405 ll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~~~~~~~-~~n~~~ylqYa~aR~~ 482 (555)
++++ +|+|++||++++.. ..+|++|+++.+... |.+...+++|+++|+.
T Consensus 341 ~i~~-----------------------------~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~ 391 (530)
T TIGR00398 341 LLAR-----------------------------FGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTL 391 (530)
T ss_pred HHHH-----------------------------cCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 79999999999976 589999999997664 3566679999999999
Q ss_pred HHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccccc
Q 008743 483 SIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 553 (555)
Q Consensus 483 silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 553 (555)
+++.+...+. ++. ....++.++.|+..+.++++.+.+++++++|+.+++++++++..+|+||+.++
T Consensus 392 ~~~~~~~~~~--~~~---~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~k 457 (530)
T TIGR00398 392 GFIKKYFNGV--LPS---EDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENK 457 (530)
T ss_pred HHHHHhcCCc--CCC---CcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9988753221 111 11224668899999999999999999999999999999999999999998764
No 13
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.97 E-value=3e-29 Score=271.41 Aligned_cols=312 Identities=19% Similarity=0.230 Sum_probs=232.0
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008743 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
.+++|.+..|+|+|+|++||||+|+.++.|+|+|+|+..||+|..+..++|.|..+..-+
T Consensus 20 ~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A-------------------- 79 (463)
T PRK00260 20 EPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRA-------------------- 79 (463)
T ss_pred CCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHH--------------------
Confidence 356789999999999999999999999999999999999999999999999876442211
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeecc-cccCCcHHHHH
Q 008743 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGVI 283 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-~~~~e-s~~~~~~~~v~ 283 (555)
.+ .| ..|+++++.+.+.|.+++++|||.+ ++++. +.|.+.+.+++
T Consensus 80 --------~~--------------------~g-----~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i 126 (463)
T PRK00260 80 --------NE--------------------EG-----ESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELI 126 (463)
T ss_pred --------HH--------------------cC-----CCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHH
Confidence 00 01 1356778888899999999999965 76644 66777889999
Q ss_pred HHHHhCCCeeeecceEEEEec-----C-----------------------CCCCeEEEec--CCcccccch---------
Q 008743 284 DELSKQGLVEESQGARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYAST--------- 324 (555)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~-----g-----------------------~~~d~vl~ks--DG~~tY~~~--------- 324 (555)
+.|.++|++|+.+|.++|+++ | +..|++|.|. .|.+.+.++
T Consensus 127 ~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWh 206 (463)
T PRK00260 127 ERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWH 206 (463)
T ss_pred HHHHHCCCEEEecCeEEEecccccccccCCCCCHHHHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChh
Confidence 999999999999999999764 1 0136788875 455544442
Q ss_pred -hHHHHHHHhhhcCCCeEEEEeeCCcc-ccHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccc
Q 008743 325 -DLAALWYRLNEEKAEWIIYVTDVGQQ-LHFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 401 (555)
Q Consensus 325 -DiA~~~~r~~~~~~d~iI~V~g~dq~-~hf~~~~~~l~-~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~ 401 (555)
++++..+++....+| |+.-|.|+. .|.....+... ..| . +++..+.|. |+|. .+|+|||||+||+|+
T Consensus 207 iecsam~~~~lg~~~D--ih~gG~DlifpHh~neiaqs~a~~g-~----p~~~~w~H~--g~v~-~~G~KMSKS~GN~i~ 276 (463)
T PRK00260 207 IECSAMSTKYLGETFD--IHGGGADLIFPHHENEIAQSEAATG-K----PFANYWMHN--GFVT-VNGEKMSKSLGNFFT 276 (463)
T ss_pred HHHHHHHHHhcCCCcc--eecCccccCCCchHhHHHHHHHhcC-C----CcceEEEEc--cEEc-cCCCcccCcCCCCCC
Confidence 454444444222333 555666643 24444333333 356 3 467778886 6776 789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHH
Q 008743 402 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARI 481 (555)
Q Consensus 402 l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~ 481 (555)
+.|++++ +|++++||++|+.++.++++|+++.+... +..+.|+
T Consensus 277 ~~dll~~-----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~a--------~~~~~rl 319 (463)
T PRK00260 277 IRDLLKK-----------------------------YDPEVLRFFLLSAHYRSPLNFSEEALEQA--------KKALERL 319 (463)
T ss_pred HHHHHHH-----------------------------cCchHhHHHHHhCCCCCCCccCHHHHHHH--------HHHHHHH
Confidence 9999998 79999999999999999999999875432 3345566
Q ss_pred HHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHH-hcchHHHHHHHHHHHHHHhccccc
Q 008743 482 CSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFTRFYSN 551 (555)
Q Consensus 482 ~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~-~~~p~~l~~yl~~La~~fn~fY~~ 551 (555)
.+.++.... .+.+..+...+..+.+.+.+|++ +++...++..++++++.+|++.+.
T Consensus 320 ~~~~~~~~~--------------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~ 376 (463)
T PRK00260 320 YNALAETAL--------------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALET 376 (463)
T ss_pred HHHHHHhhh--------------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhc
Confidence 666654320 01122456677788888999995 899999999999999999987643
No 14
>PLN02946 cysteine-tRNA ligase
Probab=99.97 E-value=3e-29 Score=271.73 Aligned_cols=319 Identities=15% Similarity=0.100 Sum_probs=229.2
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008743 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
.+++|-+..|+|+|.++.||||+|+.|..|+|+|+|++.||+|..+..++|.|..|-.-
T Consensus 77 ~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~--------------------- 135 (557)
T PLN02946 77 VEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIAR--------------------- 135 (557)
T ss_pred CCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHH---------------------
Confidence 46789999999999999999999999999999999999999999999999987644211
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eee-cccccCCcHHHHH
Q 008743 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEK-GESFYNPYIPGVI 283 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-~~~-~es~~~~~~~~v~ 283 (555)
+.+. | ..|+++++.+.+.|.+++++|||.. ++. ..+.+.+.+.+++
T Consensus 136 -------A~~~--------------------g-----~~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i 183 (557)
T PLN02946 136 -------ANEL--------------------G-----EDPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMI 183 (557)
T ss_pred -------HHHc--------------------C-----CCHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHH
Confidence 1110 1 1135677888889999999999985 333 3477778899999
Q ss_pred HHHHhCCCeeeecceEEEEec------------------C----------CCCCeEEEec--CCcccccch---------
Q 008743 284 DELSKQGLVEESQGARVIFIE------------------G----------VNIPLIIVKS--DGGFNYAST--------- 324 (555)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~------------------g----------~~~d~vl~ks--DG~~tY~~~--------- 324 (555)
+.|.++|++|+.+|.+||++. | +..|++|.|. .|.+.+-++
T Consensus 184 ~~Li~kG~aY~~~g~VYFdv~~f~~YG~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWH 263 (557)
T PLN02946 184 KQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWH 263 (557)
T ss_pred HHHHHCCCEEEECCeEEEecCcchhhhhcCCCChhHhhcCCCCCcccccCCccccceeccCCCCCCCccCCCCCCCCcHH
Confidence 999999999999999999874 1 1136888874 455555542
Q ss_pred -hHHHHHHHhhhcCCCeEEEEeeCCccccHH---HHHHHHHH-cCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCc
Q 008743 325 -DLAALWYRLNEEKAEWIIYVTDVGQQLHFD---MVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (555)
Q Consensus 325 -DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~---~~~~~l~~-lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~ 399 (555)
-|++...++ .|. .++|.|....+.|+ .-++..++ .|. +++..|.|. |+|+ .+|+|||||.||+
T Consensus 264 IECSaMs~~~--lG~--~~DIH~GG~DL~FPHHENEiAQsea~~g~-----~~a~yW~H~--G~v~-~~G~KMSKSlGN~ 331 (557)
T PLN02946 264 IECSAMSAAY--LGH--SFDIHGGGMDLVFPHHENEIAQSCAACCD-----SNISYWIHN--GFVT-VDSEKMSKSLGNF 331 (557)
T ss_pred HHHHHHHHHH--cCC--CeeEeccccccCCCcccchHHHHHHHhCC-----CCCceeeEe--eEEE-eCCCCcCCcCCCc
Confidence 233333333 222 24555555443333 23233333 454 356678895 8888 6899999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHH
Q 008743 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHA 479 (555)
Q Consensus 400 v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~a 479 (555)
++++|++++ ++++++|||+|+.++.++++|+++.+... .+.-.|++|+++
T Consensus 332 itl~dll~~-----------------------------y~~dalR~~lLs~hyr~~l~fs~e~L~~a-~~~l~~l~~~~~ 381 (557)
T PLN02946 332 FTIRQVIDL-----------------------------YHPLALRLFLLGTHYRSPINYSDVQLESA-SERIFYIYQTLH 381 (557)
T ss_pred CCHHHHHHh-----------------------------cCccceeeeeeccCCCCCcEecHHHHHHH-HHHHHHHHHHHH
Confidence 999999998 79999999999999999999999985443 344458999999
Q ss_pred HHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHH-HhcchHHHHHHHHHHHHHHhccc
Q 008743 480 RICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL-TNLLPNVVCEYLYNLSEYFTRFY 549 (555)
Q Consensus 480 R~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~-~~~~p~~l~~yl~~La~~fn~fY 549 (555)
|+++++++....... . . .+ ..+...+..+.+.+.+|+ +++.-..++..|+++++..|++.
T Consensus 382 ~~~~~l~~~~~~~~~----~--~--~~--~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~~~ 442 (557)
T PLN02946 382 DCEESLQQHDSTFEK----D--S--VP--PDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLL 442 (557)
T ss_pred HHHHHhhhhcccccc----c--c--cc--hhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 999988753211000 0 0 00 112223444556666665 45788888888888888888765
No 15
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=3.1e-28 Score=274.99 Aligned_cols=327 Identities=15% Similarity=0.165 Sum_probs=228.6
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHH
Q 008743 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (555)
++++|.-.=|+|+|++||||+|+.++.|+++|.+|..||+|......+|.|..+...+..
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~-------------------- 61 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK-------------------- 61 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHH--------------------
Confidence 467888888899999999999999999999999999999999999999988766433210
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec---ccccCCcHHHHHH
Q 008743 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVID 284 (555)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~---es~~~~~~~~v~~ 284 (555)
...+| +++++.+.+.|++.+++|||.+|++. +..|...++++++
T Consensus 62 ---------~g~~p------------------------~e~~~~~~~~~~~~~~~l~i~~d~f~rtt~~~h~~~v~~~~~ 108 (673)
T PRK00133 62 ---------EGITP------------------------EELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYL 108 (673)
T ss_pred ---------cCCCH------------------------HHHHHHHHHHHHHHHHHhCCCCCCCccCCcHHHHHHHHHHHH
Confidence 01111 34577788899999999999997543 3357778999999
Q ss_pred HHHhCCCeeeecceEEEEec-----------------------CCC----------------------------------
Q 008743 285 ELSKQGLVEESQGARVIFIE-----------------------GVN---------------------------------- 307 (555)
Q Consensus 285 ~L~~~g~~~~~dGa~~~~~~-----------------------g~~---------------------------------- 307 (555)
.|.++|++|+.++.+|+... |+.
T Consensus 109 ~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~~f 188 (673)
T PRK00133 109 KLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLKESEHFF 188 (673)
T ss_pred HHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccCChHhhcCCccccCCCcceEEecceEE
Confidence 99999999987766655321 100
Q ss_pred ------------------------------------CCeEEEec-----------CCcccccchh--HHHHH----H---
Q 008743 308 ------------------------------------IPLIIVKS-----------DGGFNYASTD--LAALW----Y--- 331 (555)
Q Consensus 308 ------------------------------------~d~vl~ks-----------DG~~tY~~~D--iA~~~----~--- 331 (555)
.|.-|-|. +|-+.|+.-| +.|.. |
T Consensus 189 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~~~~~~iyVW~dal~~Yl~~~~~~~~~ 268 (673)
T PRK00133 189 FKLPRFEEFLKEWITRSGELQPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDK 268 (673)
T ss_pred EEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCcccceeeeCCccceECCCCCCeEEEEcccchhhhhHHHhhhccc
Confidence 00001110 0111222222 11100 0
Q ss_pred ----Hhh-hcCC---CeEEEEeeCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccch
Q 008743 332 ----RLN-EEKA---EWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 402 (555)
Q Consensus 332 ----r~~-~~~~---d~iI~V~g~dq~~hf~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l 402 (555)
.+. -|.+ ..+++++|.|-..++...+ +++.++|+++ .. ..+.+|+|+. +|+|||||+||+|++
T Consensus 269 ~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~~l-----P~--~v~~hg~v~~-~G~KMSKS~GNvV~p 340 (673)
T PRK00133 269 RGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYRL-----PT--NVFAHGFLTV-EGAKMSKSRGTFIWA 340 (673)
T ss_pred ccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCCCC-----CC--EEeeeccEEe-cCCcccccCCcccCH
Confidence 000 0101 1234455555433222233 4566788742 22 2335689997 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCC-C-CCccccccccccc-cCChhHHHHHHHH
Q 008743 403 VDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-L-TNYTFSFDQMLND-KGNTAVYLLYAHA 479 (555)
Q Consensus 403 ~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~-~~~~Fd~~~~~~~-~~n~~~ylqYa~a 479 (555)
.|++++ +|+|++|||+|+..+ . +|.+|||+.+... +.+...-+.+...
T Consensus 341 ~dlie~-----------------------------ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~ 391 (673)
T PRK00133 341 RTYLDH-----------------------------LDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFAS 391 (673)
T ss_pred HHHHHH-----------------------------cCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 799999999998876 4 6999999997553 4555553444445
Q ss_pred HHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccccc
Q 008743 480 RICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 553 (555)
Q Consensus 480 R~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 553 (555)
|+++++++...+. ++ ..+.+++|+..+..+++.+.+++++++|+.+++++++++..+|+|++.++
T Consensus 392 R~~~~~~k~~~~~--~~-------~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~k 456 (673)
T PRK00133 392 RTAGFINKRFDGK--LP-------DALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNE 456 (673)
T ss_pred HHHHHHHHhcCCC--CC-------CCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999988754321 11 13447889999999999999999999999999999999999999998764
No 16
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.6e-28 Score=262.59 Aligned_cols=329 Identities=18% Similarity=0.211 Sum_probs=238.4
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHH
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (555)
.++++|--.=|.|+|++|+||+++++.+|++||.+|..|++|..+...+++|+.|..-+..
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~------------------- 64 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK------------------- 64 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHH-------------------
Confidence 4689999999999999999999999999999999999999999999999999877543321
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec---ccccCCcHHHHH
Q 008743 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVI 283 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~---es~~~~~~~~v~ 283 (555)
...+| +++++...+.|+++++.|||+||.+. ++.+.+.+++++
T Consensus 65 ----------~g~tP------------------------~el~d~~~~~~~~~~~~l~IsfD~F~rTt~~~h~~~vq~~f 110 (558)
T COG0143 65 ----------EGITP------------------------QELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFF 110 (558)
T ss_pred ----------cCCCH------------------------HHHHHHHHHHHHHHHHHhCCcccccccCCCHHHHHHHHHHH
Confidence 01222 45678888899999999999998553 345678899999
Q ss_pred HHHHhCCCeeeec--ceEEEEec---------C------------C---------C-----CCeEEEecCCc------cc
Q 008743 284 DELSKQGLVEESQ--GARVIFIE---------G------------V---------N-----IPLIIVKSDGG------FN 320 (555)
Q Consensus 284 ~~L~~~g~~~~~d--Ga~~~~~~---------g------------~---------~-----~d~vl~ksDG~------~t 320 (555)
+.|.++|++|... |..|...+ | | . .|+ -..+.++ ..
T Consensus 111 ~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~~~P~~l~~p~-~~i~g~~p~~r~~~h 189 (558)
T COG0143 111 LKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPV-CVISGATPEVREEEH 189 (558)
T ss_pred HHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccCcCCchhcCCCe-eEeeCCCccccccee
Confidence 9999999999743 55554321 1 0 0 111 1112122 22
Q ss_pred ccch----------------------------------------------------------------h--HHH------
Q 008743 321 YAST----------------------------------------------------------------D--LAA------ 328 (555)
Q Consensus 321 Y~~~----------------------------------------------------------------D--iA~------ 328 (555)
|+.+ | |.|
T Consensus 190 yFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~~ 269 (558)
T COG0143 190 YFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGE 269 (558)
T ss_pred EEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCCCCCCEEEEeeccHHHHHHHhcc
Confidence 3321 1 000
Q ss_pred --------HHHHhhhcCCC--eEEEEeeCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccC
Q 008743 329 --------LWYRLNEEKAE--WIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (555)
Q Consensus 329 --------~~~r~~~~~~d--~iI~V~g~dq~~hf~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G 397 (555)
-+.+ -|..| .+++++|.|-..++...+ ++|.+.|.+ ...++ ++.|+++ .+|+|||||+|
T Consensus 270 ~~~~~~~~~~~~--~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~-----lP~~i--~ahg~l~-~~G~KmSKSrG 339 (558)
T COG0143 270 LAEIGDDEDFKK--FWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLP-----LPTRI--FAHGFLT-LEGQKMSKSRG 339 (558)
T ss_pred hhccCChHHHHh--hCCCCCceEEEEeccccCcchhhHHHHHHHhCCCC-----CCCEE--EeeeeEE-ECCccccccCC
Confidence 0000 02222 345555555443333333 445666663 22222 2458887 56779999999
Q ss_pred CccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCC-CCCccccccccccc-cCChhHHHH
Q 008743 398 EVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLND-KGNTAVYLL 475 (555)
Q Consensus 398 ~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~~~~~Fd~~~~~~~-~~n~~~ylq 475 (555)
|+|++.+++++ +|+|++|||+++..| .+|.+|+|+.+.+. |.+.++-++
T Consensus 340 ~~V~~~~~~~~-----------------------------~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lg 390 (558)
T COG0143 340 NVVDPDELLEQ-----------------------------YGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLG 390 (558)
T ss_pred cEEeHHHHHHH-----------------------------cCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998 899999999999987 78999999999886 767777777
Q ss_pred HHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccc
Q 008743 476 YAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 552 (555)
Q Consensus 476 Ya~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~ 552 (555)
+..+|+.|+..|...+.. +.... .. .+.+.+++..+....+.+.++++.++.+++++-+++|+...|+|+++.
T Consensus 391 Nl~~R~~~fi~k~~~g~v--p~~~~-~~-~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~ 463 (558)
T COG0143 391 NLANRTLGFINKYFDGVV--PAAGA-PD-LEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQ 463 (558)
T ss_pred HHHHHHHHHHHhccCCcC--Ccccc-cc-chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcC
Confidence 778999999998876532 21111 11 256778999999999999999999999999999999999999999764
No 17
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.96 E-value=2.6e-27 Score=255.86 Aligned_cols=249 Identities=17% Similarity=0.202 Sum_probs=190.7
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008743 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
.+++|.+..|+|.|++++||||+|+.+..|+++|+|+..||+|..+..++|.|..+-.-+
T Consensus 18 ~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A-------------------- 77 (465)
T TIGR00435 18 VQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRA-------------------- 77 (465)
T ss_pred CCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHH--------------------
Confidence 356899999999999999999999999999999999999999999999999876442211
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-e-cccccCCcHHHHH
Q 008743 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-K-GESFYNPYIPGVI 283 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~-~-~es~~~~~~~~v~ 283 (555)
.+. ..+ ++++++.+.+.|.++|++|||.++. . ..+.|.+.+.+++
T Consensus 78 --------~~~-g~~------------------------~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i 124 (465)
T TIGR00435 78 --------REN-GES------------------------VYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFI 124 (465)
T ss_pred --------HHc-CCC------------------------HHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHH
Confidence 100 011 2456888889999999999999953 3 4577888899999
Q ss_pred HHHHhCCCeeeec-ceEEEEec-----C-----------------------CCCCeEEEec--CCcccccch--------
Q 008743 284 DELSKQGLVEESQ-GARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYAST-------- 324 (555)
Q Consensus 284 ~~L~~~g~~~~~d-Ga~~~~~~-----g-----------------------~~~d~vl~ks--DG~~tY~~~-------- 324 (555)
+.|.++|++|+.+ |.+||++. | +..|++|.|+ .|.+.+.++
T Consensus 125 ~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgW 204 (465)
T TIGR00435 125 EQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGW 204 (465)
T ss_pred HHHHHCCCEEEecCCcEEEeccccchhccCCCCCHHHHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCc
Confidence 9999999999998 99999764 1 0147888774 455544441
Q ss_pred --hHHHHHHHhhhcCCCeEEEEeeCCcc-ccHHHHHHHHHH-cCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCcc
Q 008743 325 --DLAALWYRLNEEKAEWIIYVTDVGQQ-LHFDMVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (555)
Q Consensus 325 --DiA~~~~r~~~~~~d~iI~V~g~dq~-~hf~~~~~~l~~-lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v 400 (555)
.+++..+++....+| |+..|.|+. .|.....+..++ .|. +++..+.|. |+|. .+|+|||||+||+|
T Consensus 205 hiecsam~~~~lg~~~D--ih~gG~Dl~fpHhene~aqs~a~~g~-----~~~~~~~h~--g~v~-~~g~KMSKS~GN~i 274 (465)
T TIGR00435 205 HIECSAMNDKYLGDQID--IHGGGVDLIFPHHENEIAQSEAAFGK-----QLAKYWMHN--GFLM-IDNEKMSKSLGNFF 274 (465)
T ss_pred HhHHHHHHHHhcCCCce--eeccccccccchHHHHHHHHHHhcCC-----CCCcEEEEe--eEEE-ecCccccccCCCcC
Confidence 355444554222344 556777764 355555444444 464 466778884 7777 68999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccc
Q 008743 401 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (555)
Q Consensus 401 ~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~ 466 (555)
++.|++++ +|++++||++|+.++.++++|+++.+.+.
T Consensus 275 ~~~dll~~-----------------------------~~~dalR~~ll~~~~~~~l~fs~~~l~~a 311 (465)
T TIGR00435 275 TVRDVLKN-----------------------------YDPEILRYFLLSVHYRSPLDFSEELLEAA 311 (465)
T ss_pred CHHHHHHH-----------------------------CCHHHHHHHHHhCCCCCCCccCHHHHHHH
Confidence 99999998 79999999999999999999999987654
No 18
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=1.7e-27 Score=268.43 Aligned_cols=327 Identities=17% Similarity=0.162 Sum_probs=229.0
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHH
Q 008743 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (555)
++++|--.=|+|+|++||||+|+.++.|+++|.+|..|++|.....++|+|..+..-+..
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~-------------------- 63 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK-------------------- 63 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHH--------------------
Confidence 468888999999999999999999999999999999999999999999999865432110
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee-cc--cccCCcHHHHHH
Q 008743 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-GE--SFYNPYIPGVID 284 (555)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~-~e--s~~~~~~~~v~~ 284 (555)
...+| +++++.+.+.|+++|++|||+||++ .+ ..+.+.++++++
T Consensus 64 ---------~g~~~------------------------~e~~d~~~~~fk~~l~~lgI~~D~f~rTt~~~h~~~v~~~~~ 110 (648)
T PRK12267 64 ---------AGKTP------------------------QEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFE 110 (648)
T ss_pred ---------cCCCH------------------------HHHHHHHHHHHHHHHHHcCCCCCCCeeCCCHHHHHHHHHHHH
Confidence 00111 3467888899999999999999743 33 345678999999
Q ss_pred HHHhCCCeeeec--ceEEEEecC--------C-------CCCeEEEecCCcccccc------------------------
Q 008743 285 ELSKQGLVEESQ--GARVIFIEG--------V-------NIPLIIVKSDGGFNYAS------------------------ 323 (555)
Q Consensus 285 ~L~~~g~~~~~d--Ga~~~~~~g--------~-------~~d~vl~ksDG~~tY~~------------------------ 323 (555)
.|.++|++|..+ |.+|...+. + ..+.+++.+ .-|+.
T Consensus 111 ~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~---~~~f~~l~~~~~~l~~~~~~~~~~~~p~~ 187 (648)
T PRK12267 111 KLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKE---ESYFFRMSKYQDRLLEYYEENPDFIQPES 187 (648)
T ss_pred HHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEec---ceEEEEcHHHHHHHHHHHhhCCcccCCHH
Confidence 999999999753 444432210 0 001111100 01110
Q ss_pred --------------hhHHHHHHHhhhcC------CCeEEEE--------------------------------eeCCccc
Q 008743 324 --------------TDLAALWYRLNEEK------AEWIIYV--------------------------------TDVGQQL 351 (555)
Q Consensus 324 --------------~DiA~~~~r~~~~~------~d~iI~V--------------------------------~g~dq~~ 351 (555)
+|++-...++ .|| .++++|| .|.|+..
T Consensus 188 ~~~~~~~~~l~~~l~D~~ISR~~~-~WGipvP~~~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~ 266 (648)
T PRK12267 188 RKNEMINNFIKPGLEDLSISRTSF-DWGIPVPFDPKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILR 266 (648)
T ss_pred HHHHHHHHHhhCCCCCcccCCCCC-CcceECCCCCCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecc
Confidence 0000000000 011 2344444 5555544
Q ss_pred cHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Q 008743 352 HFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEE 430 (555)
Q Consensus 352 hf~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~ 430 (555)
+....+ .++.++|+++ ...+ +.+|+++. +|+|||||+||+|++.|+++.
T Consensus 267 fH~i~wpa~l~~~~~~~-----p~~v--~~hg~l~~-eg~KMSKS~GN~i~p~d~l~~---------------------- 316 (648)
T PRK12267 267 FHAIYWPIMLMALGLPL-----PKKV--FAHGWWLM-KDGKMSKSKGNVVDPEELVDR---------------------- 316 (648)
T ss_pred hhHHHHHHHHHhCCCCC-----CcEE--EecceEEE-CCceecccCCcccCHHHHHHH----------------------
Confidence 222233 5567788742 2222 23488884 689999999999999999998
Q ss_pred HHHHHHhhhhhhHHHhhhccC-CCCCccccccccccc-cCChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHH
Q 008743 431 LEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADE 508 (555)
Q Consensus 431 ~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~~~~~~~-~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e 508 (555)
+|+|++|||+++.. ..+|.+|+|+.+.+. +.+...-+.+..+|+.+++.+...+. ++. ... ..+.+
T Consensus 317 -------ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~--~p~--~~~-~~~~D 384 (648)
T PRK12267 317 -------YGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGE--IPA--PGN-VTEFD 384 (648)
T ss_pred -------cCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc--CCC--CCC-Cchhh
Confidence 79999999999875 578999999998764 55666677888899999887754321 111 011 13456
Q ss_pred HHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccccc
Q 008743 509 RALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 553 (555)
Q Consensus 509 ~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 553 (555)
++++..+..+++.+.+++++++++.+++-+++++...|.|++.++
T Consensus 385 ~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~k 429 (648)
T PRK12267 385 EELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDETA 429 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 789999999999999999999999999999999999999997653
No 19
>PLN02224 methionine-tRNA ligase
Probab=99.95 E-value=7.5e-27 Score=258.29 Aligned_cols=333 Identities=15% Similarity=0.186 Sum_probs=230.2
Q ss_pred CCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHH
Q 008743 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (555)
Q Consensus 125 ~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (555)
+++++++|.-.=|+|+|++||||+|+.+++|+|+|.++..||+|....+++|+|.++..-+.. .+
T Consensus 66 ~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~-----------~g---- 130 (616)
T PLN02224 66 DEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAA-----------NG---- 130 (616)
T ss_pred CCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHH-----------cC----
Confidence 567889998888899999999999999999999999999999999999999999877643210 00
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee---cccccCCcHHH
Q 008743 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPG 281 (555)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~---~es~~~~~~~~ 281 (555)
.+| +++|+.+...|++.+++|||++|.+ .+..|...+++
T Consensus 131 --------------~~p------------------------~e~~~~~~~~~~~~~~~l~I~~D~f~rTt~~~h~~~vq~ 172 (616)
T PLN02224 131 --------------RNP------------------------PEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKE 172 (616)
T ss_pred --------------CCh------------------------HHHHHHHHHHHHHHHHHcCCCCCcCeeCCCHHHHHHHHH
Confidence 111 2345666678889999999999743 34456778999
Q ss_pred HHHHHHhCCCeeeec--ceEEEEec--CCC--------------------------------------------------
Q 008743 282 VIDELSKQGLVEESQ--GARVIFIE--GVN-------------------------------------------------- 307 (555)
Q Consensus 282 v~~~L~~~g~~~~~d--Ga~~~~~~--g~~-------------------------------------------------- 307 (555)
++..|.++|++|+.+ |.+|...+ .++
T Consensus 173 ~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~ 252 (616)
T PLN02224 173 FYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRFVQPSY 252 (616)
T ss_pred HHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCccCCHH
Confidence 999999999999754 44443222 000
Q ss_pred -------------CCeEEEec-----------CCcccccchhH--HHHH---H--H---h---hhcCCCeEEEEeeCCcc
Q 008743 308 -------------IPLIIVKS-----------DGGFNYASTDL--AALW---Y--R---L---NEEKAEWIIYVTDVGQQ 350 (555)
Q Consensus 308 -------------~d~vl~ks-----------DG~~tY~~~Di--A~~~---~--r---~---~~~~~d~iI~V~g~dq~ 350 (555)
.|+-|.|. +|-..|+--|- .|.- + + . ..+.-...+++.|.|..
T Consensus 253 ~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii 332 (616)
T PLN02224 253 RLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDIL 332 (616)
T ss_pred HHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeeccc
Confidence 01111111 01122222221 0100 0 0 0 00001123555555544
Q ss_pred ccHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 008743 351 LHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEE 429 (555)
Q Consensus 351 ~hf~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~ 429 (555)
.+...++ +++.++|++ +...+. ..|++. .+|+|||||+||+|++.|++++
T Consensus 333 ~fH~i~wpa~l~~~g~~-----~P~~i~--~~g~l~-~eG~KMSKS~GN~i~p~e~l~~--------------------- 383 (616)
T PLN02224 333 RFHAVYWPAMLMSAGLE-----LPKMVF--GHGFLT-KDGMKMGKSLGNTLEPFELVQK--------------------- 383 (616)
T ss_pred ccHHHHHHHHHHHCCCC-----CCcEEE--ecccEe-cCCccccccCCccCCHHHHHHH---------------------
Confidence 3222333 445667873 333333 347765 6899999999999999999998
Q ss_pred HHHHHHHhhhhhhHHHhhhccCC-CCCccccccccccc-cCChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHH
Q 008743 430 ELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHAD 507 (555)
Q Consensus 430 ~~~~~a~~vg~~airy~~L~~~~-~~~~~Fd~~~~~~~-~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~ 507 (555)
+|+|++|||+++..+ .++.+|+++.+... +.+...-+.+..+|+.+++.+...+. ++. + ... .+.
T Consensus 384 --------ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~--~~~-~-~~~-~~~ 450 (616)
T PLN02224 384 --------FGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCEST--LVE-D-STV-AAE 450 (616)
T ss_pred --------cCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--CCC-c-ccc-ccc
Confidence 799999999999876 68899999987654 55667777778899999988764332 111 1 111 223
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccc
Q 008743 508 ERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 552 (555)
Q Consensus 508 e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~ 552 (555)
+.+|+..+....+.+.+++++++++.+++.+++++...|.|++.+
T Consensus 451 d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~ 495 (616)
T PLN02224 451 GVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQR 495 (616)
T ss_pred cHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhC
Confidence 457889999999999999999999999999999999999998865
No 20
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=1.1e-26 Score=258.24 Aligned_cols=332 Identities=14% Similarity=0.110 Sum_probs=227.5
Q ss_pred ceEEEEecCCCCCCCCcccchhhh-hHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHH
Q 008743 128 KKAVVDFSSPNIAKEMHVGHLRST-IIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~-iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (555)
++++|.-.-|+|+|++||||+|+. ++.|+++|.+|..|++|.....++|.|..+..-+..
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~------------------- 63 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK------------------- 63 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHH-------------------
Confidence 468898999999999999999999 999999999999999999999999998765432210
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec---ccccCCcHHHHH
Q 008743 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVI 283 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~---es~~~~~~~~v~ 283 (555)
...+ .+++++...+.|.+.+++|||.+|++. +..|...+++++
T Consensus 64 ----------~g~~------------------------~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~ 109 (556)
T PRK12268 64 ----------EGVT------------------------PQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFF 109 (556)
T ss_pred ----------cCCC------------------------HHHHHHHHHHHHHHHHHHcCCcCCCCcCCCCHHHHHHHHHHH
Confidence 0011 124567777889999999999997542 235667899999
Q ss_pred HHHHhCCCeeeecceEEEEec-----------C------------CC---------------------------------
Q 008743 284 DELSKQGLVEESQGARVIFIE-----------G------------VN--------------------------------- 307 (555)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~-----------g------------~~--------------------------------- 307 (555)
++|.++|++|+.++.+++... | +.
T Consensus 110 ~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~qw 189 (556)
T PRK12268 110 LKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTPEFRETEHF 189 (556)
T ss_pred HHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhccccCChHHhcCCccccCCCcCeEEecceE
Confidence 999999999987665555321 1 00
Q ss_pred -------------------------------------CCeEEEe------------cCCcccccchhHH--HH---HH--
Q 008743 308 -------------------------------------IPLIIVK------------SDGGFNYASTDLA--AL---WY-- 331 (555)
Q Consensus 308 -------------------------------------~d~vl~k------------sDG~~tY~~~DiA--~~---~~-- 331 (555)
.|.-|-| .+|.+.|+.-|.. |. ..
T Consensus 190 F~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~ 269 (556)
T PRK12268 190 FLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVPWPGFEGKVFYVWFDAVIGYISASKEWA 269 (556)
T ss_pred EEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHH
Confidence 0000000 0112222222210 00 00
Q ss_pred H-------hh-hc-CC-CeEEEEeeCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCcc
Q 008743 332 R-------LN-EE-KA-EWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (555)
Q Consensus 332 r-------~~-~~-~~-d~iI~V~g~dq~~hf~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v 400 (555)
+ +. -| .. -..+.+.|.|+......++ .++.+.|.+. .++ ..++.+|+|+. +|+|||||+||+|
T Consensus 270 ~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~---~~P--~~v~~~G~v~~-~G~KMSKS~GN~I 343 (556)
T PRK12268 270 ERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPL---KLP--DEIVSSEYLTL-EGGKFSKSRGWGI 343 (556)
T ss_pred HhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCC---CCC--CEeeccCCEEE-CCeeeccCCCccc
Confidence 0 00 01 00 1134555666544222333 4456666310 122 25556788884 7999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCC-CCCccccccccccc-cCChhHHHHHHH
Q 008743 401 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLND-KGNTAVYLLYAH 478 (555)
Q Consensus 401 ~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~~~~~Fd~~~~~~~-~~n~~~ylqYa~ 478 (555)
++.|++++ +|+||+||++++..+ ..|++|+++.+... +.+....+.+..
T Consensus 344 ~p~dli~~-----------------------------yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~ 394 (556)
T PRK12268 344 WVDDALER-----------------------------YPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLV 394 (556)
T ss_pred CHHHHHHH-----------------------------cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHH
Confidence 99999998 799999999998865 58999999987543 334444333444
Q ss_pred HHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccccc
Q 008743 479 ARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 553 (555)
Q Consensus 479 aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 553 (555)
+|+++++++...+. .+ ... .++.+++|+..+..+++.+.+++++++++.++.++++++..+|+|++..+
T Consensus 395 ~r~~~~~~~~~~~~--~~---~~~-~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~k 463 (556)
T PRK12268 395 NRVLSFIEKYFGGI--VP---PGE-LGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKA 463 (556)
T ss_pred HHHHHHHHHhcCCc--CC---CCc-CCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 79999988754221 11 111 24567899999999999999999999999999999999999999997654
No 21
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=1.1e-25 Score=241.71 Aligned_cols=337 Identities=15% Similarity=0.151 Sum_probs=217.7
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008743 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
.+++|-+..|+|+|.++.||||+|+.|..|+|+|+|+..||+|..+..|.|.|...+ +.+ .+++.|.
T Consensus 20 ~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~----------~~D--e~ddKii- 86 (490)
T PRK14536 20 EHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTD----------DAD--SGEDKMV- 86 (490)
T ss_pred CCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeecccccccc----------CCc--CCChHHH-
Confidence 456899999999999999999999999999999999999999999999999985332 111 1344332
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeec-ccccCCcHHHHH
Q 008743 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGVI 283 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-~~~~-es~~~~~~~~v~ 283 (555)
.++.+ .| ..++++++.+.+.|.+++++|||.+ ++++ .+.|.+.+.+++
T Consensus 87 -----~~A~~--------------------~g-----~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i 136 (490)
T PRK14536 87 -----KSAQE--------------------HG-----KSVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALI 136 (490)
T ss_pred -----HHHHH--------------------cC-----CCHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHH
Confidence 12211 12 1235678888899999999999998 5554 367778899999
Q ss_pred HHHHhCCCeeeecceEEEEec-----C-----------------------CCCCeEEEec----CC-cccccch------
Q 008743 284 DELSKQGLVEESQGARVIFIE-----G-----------------------VNIPLIIVKS----DG-GFNYAST------ 324 (555)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~-----g-----------------------~~~d~vl~ks----DG-~~tY~~~------ 324 (555)
+.|.++|++|+.+|.+||++. | +..|++|.|. .| .+.+-++
T Consensus 137 ~~L~~kG~aY~~~~~vyFdv~~~~~YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRP 216 (490)
T PRK14536 137 KRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYP 216 (490)
T ss_pred HHHHHCCCEEEECCeEEEeCCcccchhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCC
Confidence 999999999999999999763 1 0136677543 11 2334331
Q ss_pred ----hHHHHHHHhhhcCCCeEEEEeeCCcc-ccHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeeEEECCCCccceeccCC
Q 008743 325 ----DLAALWYRLNEEKAEWIIYVTDVGQQ-LHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE 398 (555)
Q Consensus 325 ----DiA~~~~r~~~~~~d~iI~V~g~dq~-~hf~~~~~~l~~l-G~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~ 398 (555)
-+++...++ .|..--|+.-|.|.. .|.....+..+++ |. +++..|.|. |++. .+|+|||||.||
T Consensus 217 GWHIECsaMs~~~--lg~~~DIH~GG~DliFPHHeneiAqs~a~~g~-----~~~~~w~h~--g~l~-~~g~KMSKSlGN 286 (490)
T PRK14536 217 GWHIECSAMSMKY--LGEQCDIHIGGVDHIRVHHTNEIAQCEAATGK-----PWVRYWLHH--EFLL-MNKGKMSKSAGQ 286 (490)
T ss_pred ChHHHHHHHHHHH--cCCceeEEeccccCCCcchhhHHHHHHHhcCC-----CcceEEEEc--CEEe-ecCccccccCCC
Confidence 122222232 233322444455543 2433343444443 54 467788997 5566 678899999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHH
Q 008743 399 VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAH 478 (555)
Q Consensus 399 ~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~ 478 (555)
+++++||++++ ++++++||++|+.++.++++|+++.+.+... +--.++.++
T Consensus 287 ~itl~dll~~g----------------------------~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~-~~~rl~~~~ 337 (490)
T PRK14536 287 FLTLSSLQEKG----------------------------FQPLDYRFFLLGGHYRSQLAFSWEALKTAKA-ARRSLVRRV 337 (490)
T ss_pred cccHHHHHhcC----------------------------CCHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHH
Confidence 99999999974 5789999999999999999999998866433 222333333
Q ss_pred HHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHH-HhcchHHHHHHHHHHHHHHhc
Q 008743 479 ARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL-TNLLPNVVCEYLYNLSEYFTR 547 (555)
Q Consensus 479 aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~-~~~~p~~l~~yl~~La~~fn~ 547 (555)
.++...+. ...............+.....+...+..+...+.+|+ +++.-..++..|+++++..|.
T Consensus 338 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~~~~n~ 404 (490)
T PRK14536 338 ARVVDAAR---ATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLVKDTSV 404 (490)
T ss_pred HHHHHhhh---cccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhh
Confidence 44322111 0000000000000000000011122334555565555 467888888888888888774
No 22
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.94 E-value=2.7e-25 Score=237.60 Aligned_cols=258 Identities=18% Similarity=0.202 Sum_probs=190.4
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHH
Q 008743 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (555)
++|-+..|+|+|..+.||||+|+.|..|+|+|+|+..||+|..+..|.|.|...+ ++. .+++.|.
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg-----------~~D-~gddKIi--- 84 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTG-----------DFD-DGEDKVV--- 84 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccC-----------Ccc-CCCcHHH---
Confidence 5899999999999999999999999999999999999999999999999986322 111 1344332
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eec-ccccCCcHHHHHHH
Q 008743 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKG-ESFYNPYIPGVIDE 285 (555)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~-es~~~~~~~~v~~~ 285 (555)
.++.+ +| ..|+++++.....|.+++++|||.++ +.+ .+.+.+.+.++++.
T Consensus 85 ---~~A~~--------------------~g-----~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~ 136 (481)
T PRK14534 85 ---KAARE--------------------RG-----LTVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKV 136 (481)
T ss_pred ---HHHHH--------------------cC-----CCHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHH
Confidence 22221 12 12456788888999999999999984 443 35666789999999
Q ss_pred HHhCCCeeeecceEEEEec-----C-------------------------CCCCeEEEe-----cCCcccccch------
Q 008743 286 LSKQGLVEESQGARVIFIE-----G-------------------------VNIPLIIVK-----SDGGFNYAST------ 324 (555)
Q Consensus 286 L~~~g~~~~~dGa~~~~~~-----g-------------------------~~~d~vl~k-----sDG~~tY~~~------ 324 (555)
|.++|++|+.+|.++|++. | +..|++|.| .+|.+++-++
T Consensus 137 L~~kG~aY~~~~~vyFdv~~~~~YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrP 216 (481)
T PRK14534 137 LEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYP 216 (481)
T ss_pred HHHCCCEEEECCeEEEecccccchhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCC
Confidence 9999999999999999764 1 013677776 3566655542
Q ss_pred ----hHHHHHHHhhhcCCCeEEEEeeCCccc-cHHHHHHHHHH-cCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCC
Q 008743 325 ----DLAALWYRLNEEKAEWIIYVTDVGQQL-HFDMVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE 398 (555)
Q Consensus 325 ----DiA~~~~r~~~~~~d~iI~V~g~dq~~-hf~~~~~~l~~-lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~ 398 (555)
.+++..++. ++...-|+..|.|+.. |.....+..++ .|. +++..|.|. |+++ -+|+|||||.||
T Consensus 217 gWHiECsam~~~~--lg~~~DIH~GG~DliFPHHene~Aqs~a~~g~-----~~~~~W~H~--g~l~-~~g~KMSKSlGN 286 (481)
T PRK14534 217 SWHLECAAMNLEY--FKSTLDIHLGGVDHIGVHHINEIAIAECYLNK-----KWCDMFVHG--EFLI-MEYEKMSKSNNN 286 (481)
T ss_pred cHHHHHHHHHHHH--cCCcceEEecccccCCCcchhHHHHHhhhcCC-----CcceEEEEe--cEEE-ecCceecccCCC
Confidence 334333333 3333335556666542 44444344444 355 467789998 6676 468899999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccc
Q 008743 399 VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (555)
Q Consensus 399 ~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~ 466 (555)
+++++|+++++ ++++++||++|+.++.++++|+++.+.+-
T Consensus 287 ~i~l~dll~~~----------------------------~~~~alR~~lls~~yr~~l~Fs~e~l~~a 326 (481)
T PRK14534 287 FITIKDLEDQG----------------------------FSPLDFRYFCLTAHYRTQLKFTFNNLKAC 326 (481)
T ss_pred cccHHHHHhcC----------------------------CChhHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 99999999874 57789999999999999999999988664
No 23
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.4e-25 Score=234.94 Aligned_cols=247 Identities=19% Similarity=0.236 Sum_probs=186.4
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008743 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
.+.+|-+..|+|+|....||||+|+.|..|+|.|+|++.||+|..+..|.|.. +.|
T Consensus 19 ~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDID----------------------DKI-- 74 (464)
T COG0215 19 DPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDID----------------------DKI-- 74 (464)
T ss_pred CCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEecccccc----------------------HHH--
Confidence 34459999999999999999999999999999999999999999999999942 222
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeecc-cccCCcHHHHH
Q 008743 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGVI 283 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-~~~~e-s~~~~~~~~v~ 283 (555)
..++.+ +| ..|+++++.+...|.++++.|||.- +.++. +.|.+.+-+++
T Consensus 75 ----i~rA~~--------------------~g-----~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I 125 (464)
T COG0215 75 ----INRARE--------------------EG-----LSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFI 125 (464)
T ss_pred ----HHHHHH--------------------hC-----CCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHH
Confidence 222221 11 1367788999999999999999964 66554 77777888999
Q ss_pred HHHHhCCCeeee-cceEEEEec---------C--------------------CCCCeEEEec--CCcccccch-------
Q 008743 284 DELSKQGLVEES-QGARVIFIE---------G--------------------VNIPLIIVKS--DGGFNYAST------- 324 (555)
Q Consensus 284 ~~L~~~g~~~~~-dGa~~~~~~---------g--------------------~~~d~vl~ks--DG~~tY~~~------- 324 (555)
+.|.++|++|+. +|.++|++. | +..|++|.|+ -|.|.|-++
T Consensus 126 ~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPG 205 (464)
T COG0215 126 EKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPG 205 (464)
T ss_pred HHHHHCCceEEecCCcEEEecccchhhHhhcCCCChhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCCCCCc
Confidence 999999999997 789999774 1 1247899885 466666553
Q ss_pred ---hHHHHHHHhhhcCCCeEEEEeeCCccccHH---HHHHHHHHc-CCCCCCCCCCCcEEEEEeeEEECCCCccceeccC
Q 008743 325 ---DLAALWYRLNEEKAEWIIYVTDVGQQLHFD---MVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (555)
Q Consensus 325 ---DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~---~~~~~l~~l-G~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G 397 (555)
.|++...+.-... ++|.|....+-|+ .-.+..+++ |-. +++.-|.|. |+|. -+|+|||||.|
T Consensus 206 WHIECSaM~~~~LG~~----~DIHgGG~DLiFPHHENEiAQsea~~g~~----~~a~yWmH~--G~l~-i~geKMSKSLG 274 (464)
T COG0215 206 WHIECSAMSTKYLGET----FDIHGGGSDLIFPHHENEIAQSEAATGVK----PFAKYWMHN--GFLN-IDGEKMSKSLG 274 (464)
T ss_pred hhHHHHHHHHHHhCCC----cceecCcccccCCCcccHHHHHHhhhCCC----cceeEeEEc--ceee-ecCcCcccccC
Confidence 2332222221222 3455555444344 333334443 422 478889998 6676 67999999999
Q ss_pred CccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCcccccccccc
Q 008743 398 EVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 465 (555)
Q Consensus 398 ~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~ 465 (555)
|++++.|+|++ +.+.++||++|+.+..++++|+.+.+.+
T Consensus 275 Nfiti~d~l~~-----------------------------~~p~~lR~~lls~HYR~pl~fsee~L~~ 313 (464)
T COG0215 275 NFITVRDLLKK-----------------------------YDPEVLRLFLLSSHYRSPLDFSEELLEE 313 (464)
T ss_pred CeeEHHHHHhh-----------------------------cCHHHHHHHHHHHHhCCccccCHHHHHH
Confidence 99999999998 6889999999999999999999998754
No 24
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.94 E-value=4.3e-25 Score=230.83 Aligned_cols=305 Identities=14% Similarity=0.092 Sum_probs=209.1
Q ss_pred CCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHH
Q 008743 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (555)
Q Consensus 125 ~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (555)
..|++|-+..|+|+|.+++||||+|+.|..|+|+|+|+..||+|..+..++|.|..|-.-+
T Consensus 5 ~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A------------------- 65 (384)
T PRK12418 5 APGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERA------------------- 65 (384)
T ss_pred CCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHH-------------------
Confidence 3455899999999999999999999999999999999999999999999999887553221
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCe-eeee-cccccCCcHHHH
Q 008743 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LEEK-GESFYNPYIPGV 282 (555)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~-f~~~-~es~~~~~~~~v 282 (555)
.+. ..+ ++++++.+.+.|.+++++|||. ++.+ .-+.+.+.+.++
T Consensus 66 ---------~~~-G~~------------------------~~e~a~~~~~~f~~d~~~Lni~~~~~~~raTe~i~~~~~~ 111 (384)
T PRK12418 66 ---------ARD-GVD------------------------WRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVVEL 111 (384)
T ss_pred ---------HHc-CCC------------------------HHHHHHHHHHHHHHHHHHhCCCCCCccccCCCCHHHHHHH
Confidence 100 011 2456777888999999999984 5533 335556789999
Q ss_pred HHHHHhCCCeeeecc----eEEEEec-----CC---------------------C------CCeEEEec--CCcccccch
Q 008743 283 IDELSKQGLVEESQG----ARVIFIE-----GV---------------------N------IPLIIVKS--DGGFNYAST 324 (555)
Q Consensus 283 ~~~L~~~g~~~~~dG----a~~~~~~-----g~---------------------~------~d~vl~ks--DG~~tY~~~ 324 (555)
++.|.++|++|+.+| .++|++. |. + .|++|.|+ .|.+.+-++
T Consensus 112 i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~~~~w~sp 191 (384)
T PRK12418 112 VEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPSWPSP 191 (384)
T ss_pred HHHHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccccCcccccCCCcccceeeccCCCCCCcccCC
Confidence 999999999999888 8999864 10 0 25566664 344444432
Q ss_pred ----------hHHHHHHHhhhcCCCeEEEEeeCCcc-ccHHHHHHHHHH-cCCCCCCCCCCCcEEEEEeeEEECCCCccc
Q 008743 325 ----------DLAALWYRLNEEKAEWIIYVTDVGQQ-LHFDMVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRL 392 (555)
Q Consensus 325 ----------DiA~~~~r~~~~~~d~iI~V~g~dq~-~hf~~~~~~l~~-lG~~~~~~~~~~~~~Hv~~g~v~~~~G~km 392 (555)
-|++...+.....+| |+.-|.|+. .|.....+..++ .|-. +++..+.|. |+|. .+|+||
T Consensus 192 wG~GRPGWHiECsam~~~~lg~~~D--IH~GG~DL~FPHHeneiaq~~a~~g~~----~~~~~w~H~--g~l~-~~G~KM 262 (384)
T PRK12418 192 FGPGRPGWHIECSAIALNRLGSGFD--IQGGGSDLIFPHHEFSAAHAEAATGER----RFARHYVHA--GMIG-LDGEKM 262 (384)
T ss_pred CCCCCChhHHHHHHHHHHHcCCCcc--cccCccccccchhHhHHHHHHHhcCCC----CcceEEEEC--CEEC-CCCCcc
Confidence 233333333222233 434455543 244444333344 4542 477788886 5554 789999
Q ss_pred eeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhH
Q 008743 393 RTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAV 472 (555)
Q Consensus 393 SkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ 472 (555)
|||.||+|++.|+++.+ ..++++||++|+..+.++++|+++.+.+...
T Consensus 263 SKSlGN~i~~~ell~~G----------------------------~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~---- 310 (384)
T PRK12418 263 SKSRGNLVFVSRLRAAG----------------------------VDPAAIRLALLAGHYRADREWTDAVLAEAEA---- 310 (384)
T ss_pred cCcCCCcCCHHHHHhcc----------------------------CChhheeEEEeccCCCCCcccCHHHHHHHHH----
Confidence 99999999999987642 3445999999999999999999998754221
Q ss_pred HHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHH-HhcchHHHHHHHHHHHHHHhccc
Q 008743 473 YLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL-TNLLPNVVCEYLYNLSEYFTRFY 549 (555)
Q Consensus 473 ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~-~~~~p~~l~~yl~~La~~fn~fY 549 (555)
.+.|+.+.+++.. .+ .+..+++.+.+|+ +++.-..++.-|+++++..|.+-
T Consensus 311 ----~l~r~~~~~~~~~---------------~~-------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~ 362 (384)
T PRK12418 311 ----RLARWRAAAALPA---------------GP-------DAADVVARVRAALADDLDTPGALAAVDGWATDALEGG 362 (384)
T ss_pred ----HHHHHHHHHhccc---------------cc-------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcc
Confidence 2334444333210 00 1122345555555 45899999999999999998875
No 25
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.94 E-value=7.5e-25 Score=249.08 Aligned_cols=336 Identities=13% Similarity=0.134 Sum_probs=230.6
Q ss_pred CceEEEEecCCCCCCCCcccchhhh-hHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRST-IIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~-iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
.++++|--.=|+|||++||||++++ +..|++||.+|..|++|......+++|+.+..-+..
T Consensus 16 ~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~------------------ 77 (801)
T PLN02610 16 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE------------------ 77 (801)
T ss_pred CCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHH------------------
Confidence 4579999999999999999999975 668999999999999999999999999876533210
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec---ccccCCcHHHH
Q 008743 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGV 282 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~---es~~~~~~~~v 282 (555)
....| +++++.+.+.|++.+++|||+||.+. +..|...++++
T Consensus 78 -----------~g~~p------------------------~e~~d~~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~ 122 (801)
T PLN02610 78 -----------ENCTP------------------------KEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAI 122 (801)
T ss_pred -----------cCCCH------------------------HHHHHHHHHHHHHHHHHcCCccccCccCCCHHHHHHHHHH
Confidence 01112 34677777889999999999997542 34567789999
Q ss_pred HHHHHhCCCeeeec--ceEEEEec-----------------------CC----------------------C--------
Q 008743 283 IDELSKQGLVEESQ--GARVIFIE-----------------------GV----------------------N-------- 307 (555)
Q Consensus 283 ~~~L~~~g~~~~~d--Ga~~~~~~-----------------------g~----------------------~-------- 307 (555)
+..|.++|++|+.. |.+|...+ |+ .
T Consensus 123 f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~ 202 (801)
T PLN02610 123 FKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDT 202 (801)
T ss_pred HHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchhhhccccCChhhhcCCcccCCCCcceEEEc
Confidence 99999999999643 33322110 00 0
Q ss_pred -------------------------------------------CCeEEEec------------CCcccccchh--HHHHH
Q 008743 308 -------------------------------------------IPLIIVKS------------DGGFNYASTD--LAALW 330 (555)
Q Consensus 308 -------------------------------------------~d~vl~ks------------DG~~tY~~~D--iA~~~ 330 (555)
.|+-|.|. +|-..|+--| +.|.-
T Consensus 203 ~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis 282 (801)
T PLN02610 203 DHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVS 282 (801)
T ss_pred ceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCCCCCCcEEEEehhhHHHHHH
Confidence 01101110 1122233222 11100
Q ss_pred ----H--Hhh-hcCC--C-eEEEEeeCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCc
Q 008743 331 ----Y--RLN-EEKA--E-WIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (555)
Q Consensus 331 ----~--r~~-~~~~--d-~iI~V~g~dq~~hf~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~ 399 (555)
| .+. -|.. | .+++++|.|-..++..++ ++|.++|.+. +....+ +..|+++ .+|+|||||+||+
T Consensus 283 ~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~---~~p~~i--~~~g~l~-~eG~KMSKS~GNv 356 (801)
T PLN02610 283 ITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW---TMMKTI--SVTEYLN-YEGGKFSKSKGVG 356 (801)
T ss_pred HHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCc---CCCCEE--EeccCEe-cCCceecCcCCcc
Confidence 0 000 1221 1 345556666444333444 5567777420 111222 2357776 6799999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCC-CCCccccccccccc-cCChhHHHHHH
Q 008743 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLND-KGNTAVYLLYA 477 (555)
Q Consensus 400 v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~~~~~Fd~~~~~~~-~~n~~~ylqYa 477 (555)
|++.++++.. +|+|++|||+++..+ .+|.+|+|+.+.+. |.+.+.-+.+.
T Consensus 357 V~p~~~i~~~----------------------------yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNl 408 (801)
T PLN02610 357 VFGNDAKDTN----------------------------IPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNF 408 (801)
T ss_pred cCHHHHHhcc----------------------------CCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999998842 799999999999975 78999999999886 66778878888
Q ss_pred HHHHHHHHHh----hCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccc
Q 008743 478 HARICSIIRK----SGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 552 (555)
Q Consensus 478 ~aR~~silrk----~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~ 552 (555)
.+|+.+++.+ +..+. ++... .....+.+.+|+..+....+.+.+++++++++.+++.+++++...|+|++..
T Consensus 409 v~R~~~~i~~~~~k~~~g~--vp~~~-~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~ 484 (801)
T PLN02610 409 INRVLSFIAKPPGAGYGSV--IPDAP-GAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQES 484 (801)
T ss_pred HHHHHHHHHhhhhhccCCc--CCCcc-ccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999884 33322 11111 1011234567999999999999999999999999999999999999999865
No 26
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.94 E-value=7.1e-25 Score=239.01 Aligned_cols=251 Identities=15% Similarity=0.197 Sum_probs=184.8
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008743 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
.+++|-+..|+|+|..+.||||+|+.|..|+|+|+|+..||+|..+..++|.|..+-.-
T Consensus 245 ~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~--------------------- 303 (699)
T PRK14535 245 DPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIAR--------------------- 303 (699)
T ss_pred CCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHH---------------------
Confidence 45789999999999999999999999999999999999999999999999987644221
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eee-cccccCCcHHHHH
Q 008743 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEK-GESFYNPYIPGVI 283 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-~~~-~es~~~~~~~~v~ 283 (555)
+.+. | ..|+++++.+.+.|.+++++|||.. ++. ..+.+.+.+.+++
T Consensus 304 -------A~e~--------------------G-----~sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI 351 (699)
T PRK14535 304 -------AAEN--------------------G-----ETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMI 351 (699)
T ss_pred -------HHHc--------------------C-----CCHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHH
Confidence 1110 1 1134567778889999999999998 443 3467778899999
Q ss_pred HHHHhCCCeeee-cceEEEEec-----C-----------------------CCCCeEEEec--CCcccccch--------
Q 008743 284 DELSKQGLVEES-QGARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYAST-------- 324 (555)
Q Consensus 284 ~~L~~~g~~~~~-dGa~~~~~~-----g-----------------------~~~d~vl~ks--DG~~tY~~~-------- 324 (555)
+.|.++|++|+. +|.+||++. | +..|++|.|+ .|.+.+-++
T Consensus 352 ~~LidkG~AYe~~~gsVYFdV~~f~~YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGW 431 (699)
T PRK14535 352 ETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGW 431 (699)
T ss_pred HHHHHCCCEEEeCCCCEEEecccccccccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCCCCCch
Confidence 999999999986 678999764 1 1146788774 455555542
Q ss_pred --hHHHHHHHhhhcCCCeEEEEeeCCccc---cHHHHHHHHHH-cCCCCCC-----------CCCCCcEEEEEeeEEECC
Q 008743 325 --DLAALWYRLNEEKAEWIIYVTDVGQQL---HFDMVFSAAKR-AGWLSAD-----------DSTYPKASHVGFGLVLGE 387 (555)
Q Consensus 325 --DiA~~~~r~~~~~~d~iI~V~g~dq~~---hf~~~~~~l~~-lG~~~~~-----------~~~~~~~~Hv~~g~v~~~ 387 (555)
-+++...++ .|. .++|.|.+... |.....+..++ .|....+ .+++.-|.|. |+|. .
T Consensus 432 HIECSAMs~~~--LG~--~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHn--G~V~-v 504 (699)
T PRK14535 432 HIECSAMSENL--FGD--TFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHN--GFIR-V 504 (699)
T ss_pred HHHHHHHHHHH--cCC--cceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEEC--CeEe-e
Confidence 233333333 232 24555555444 33333333344 3431000 1366779998 7787 6
Q ss_pred CCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCcccccccccc
Q 008743 388 DGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 465 (555)
Q Consensus 388 ~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~ 465 (555)
+|+|||||.||++++.|++++ +|++++||++|+.++.++++|+++.+.+
T Consensus 505 dGeKMSKSLGN~it~~dlLe~-----------------------------ygpdalRl~lLsshYRspL~fS~e~Le~ 553 (699)
T PRK14535 505 DGEKMSKSLGNFFTIREVLKQ-----------------------------YDPEVVRFFILRAHYRSPLNYSDAHLDD 553 (699)
T ss_pred CCCccCCCCCCcCCHHHHHHh-----------------------------CCHHHHHHHHHcCCCCCCCCcCHHHHHH
Confidence 899999999999999999997 7999999999999999999999987754
No 27
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.93 E-value=3.6e-24 Score=224.91 Aligned_cols=247 Identities=17% Similarity=0.155 Sum_probs=177.6
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHH
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (555)
+++|-+..|+|.|.+++||||+|+.|..|+|+|+|+..||+|..+..++|.|..|-.-+
T Consensus 34 ~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A--------------------- 92 (411)
T TIGR03447 34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERA--------------------- 92 (411)
T ss_pred CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHH---------------------
Confidence 56799999999999999999999999999999999999999999999999886553221
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCe-ee-eecccccCCcHHHHHH
Q 008743 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LE-EKGESFYNPYIPGVID 284 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~-f~-~~~es~~~~~~~~v~~ 284 (555)
.+. ..+ ++++++.....|.+++++|||. ++ +..-+.+.+.+.++++
T Consensus 93 -------~~~-g~t------------------------~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~ 140 (411)
T TIGR03447 93 -------ERD-GVD------------------------WRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVE 140 (411)
T ss_pred -------HHc-CCC------------------------HHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHH
Confidence 110 011 2456777788999999999987 44 4333555677899999
Q ss_pred HHHhCCCeeeecc----eEEEEec-----C----C-----------------C------CCeEEEec--CCcccccch--
Q 008743 285 ELSKQGLVEESQG----ARVIFIE-----G----V-----------------N------IPLIIVKS--DGGFNYAST-- 324 (555)
Q Consensus 285 ~L~~~g~~~~~dG----a~~~~~~-----g----~-----------------~------~d~vl~ks--DG~~tY~~~-- 324 (555)
.|.++|++|+.+| .++|++. | . + .|++|.|+ .|.+.+-++
T Consensus 141 ~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG 220 (411)
T TIGR03447 141 KLLAAGAAYEVEGPEYPDVYFSIEATEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFG 220 (411)
T ss_pred HHHHCCCEEecCCCCcCcEEEeccchhccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCC
Confidence 9999999999887 7999764 1 0 1 24566653 344434332
Q ss_pred --------hHHHHHHHhhhcCCCeEEEEeeCCccccHH---HHHHHHHH-cCCCCCCCCCCCcEEEEEeeEEECCCCccc
Q 008743 325 --------DLAALWYRLNEEKAEWIIYVTDVGQQLHFD---MVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRL 392 (555)
Q Consensus 325 --------DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~---~~~~~l~~-lG~~~~~~~~~~~~~Hv~~g~v~~~~G~km 392 (555)
-|++...++ .+. .++|.+......|+ ...+..++ .|-. +++..|.|. |+|. .+|+||
T Consensus 221 ~GRPGWHiECsam~~~~--lg~--~~Dih~GG~DLifpHheneiaq~~A~~g~~----~~~~~w~H~--g~l~-~~G~KM 289 (411)
T TIGR03447 221 PGRPGWHIECSAIATNR--LGA--GFDIQGGGSDLIFPHHEFSAAHAEAATGVR----RMARHYVHA--GMIG-LDGEKM 289 (411)
T ss_pred CCCChhHHHHHHHHHHH--cCC--ceecccCcccccccchHhHHHHHHHhcCCC----CcceEEEEC--CEEC-cCCCCc
Confidence 233333333 232 24556444433333 33222333 3442 477789997 6665 789999
Q ss_pred eeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCcccccccccc
Q 008743 393 RTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 465 (555)
Q Consensus 393 SkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~ 465 (555)
|||.||++++.|+++.+ .+++++||++++....++++|+.+.+.+
T Consensus 290 SKSlGN~i~~~dl~~~g----------------------------~dp~~lRl~lls~~Yr~pl~fs~e~l~~ 334 (411)
T TIGR03447 290 SKSLGNLVFVSKLRAAG----------------------------VDPAAIRLGLLAGHYRQDRDWTDAVLAE 334 (411)
T ss_pred cCcCCCCCCHHHHHhcC----------------------------CCcccEEEEEecCCCCCCCccCHHHHHH
Confidence 99999999999987652 4677999999999999999999998754
No 28
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.92 E-value=1.4e-24 Score=217.45 Aligned_cols=249 Identities=20% Similarity=0.242 Sum_probs=167.3
Q ss_pred CCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHH
Q 008743 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (555)
Q Consensus 125 ~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (555)
..+++|-+..|+|+|....||||+|+.|.-|+|.|+|++.||+|..+..|.|.. +.
T Consensus 4 ~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiD----------------------DK-- 59 (300)
T PF01406_consen 4 LNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDID----------------------DK-- 59 (300)
T ss_dssp SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SS----------------------HH--
T ss_pred CCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccc----------------------hH--
Confidence 457889999999999999999999999999999999999999999999999953 21
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeec-ccccCCcHHHH
Q 008743 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGV 282 (555)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-~~~~-es~~~~~~~~v 282 (555)
+..++.+. | ..|+++++.+.+.|.+++++|||.- +.++ -|.+.+.+.+.
T Consensus 60 ----ii~~A~~~--------------------g-----~~~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i~~ii~~ 110 (300)
T PF01406_consen 60 ----IIKRAREE--------------------G-----VSPQELARRYEEEFFEDMKALNVLPPDHYPRATEHIPEIIEL 110 (300)
T ss_dssp ----HHHHHHHT--------------------T-----S-HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGHHHHHHH
T ss_pred ----HHHHHHhc--------------------c-----CCHHHHHHHHHHHHHHHHHHcCCCCCccccchhccHHHHHHH
Confidence 22222211 1 1256778888899999999999996 5443 36677788899
Q ss_pred HHHHHhCCCeeeec-ceEEEEec-----C-----------------------CCCCeEEEec--CCcccccch-------
Q 008743 283 IDELSKQGLVEESQ-GARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYAST------- 324 (555)
Q Consensus 283 ~~~L~~~g~~~~~d-Ga~~~~~~-----g-----------------------~~~d~vl~ks--DG~~tY~~~------- 324 (555)
++.|.++|++|+.+ |.++|+++ | +..|++|.|. .|.+.+-++
T Consensus 111 i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPG 190 (300)
T PF01406_consen 111 IEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPG 190 (300)
T ss_dssp HHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-
T ss_pred HHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccccCCCcceeeeecccccCCcccCCCccCcCc
Confidence 99999999999988 99999874 1 1247888876 344444442
Q ss_pred ---hHHHHHHHhhhcCCCeEEEEeeCCcc-ccHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCc
Q 008743 325 ---DLAALWYRLNEEKAEWIIYVTDVGQQ-LHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (555)
Q Consensus 325 ---DiA~~~~r~~~~~~d~iI~V~g~dq~-~hf~~~~~~l~~l-G~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~ 399 (555)
-+++...+. +|...=|+.-|.|+. .|...-.+..+++ |- +++..|.|. |+|. -+|+|||||.||+
T Consensus 191 WHiECsam~~~~--lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~-----~~a~~W~H~--g~l~-~~g~KMSKSlgN~ 260 (300)
T PF01406_consen 191 WHIECSAMSMKY--LGDTFDIHGGGIDLIFPHHENEIAQSEAATGK-----PFANYWMHN--GHLN-VDGEKMSKSLGNF 260 (300)
T ss_dssp HHHHHHHHHHHH--HTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS------SEEEEEEE----EE-ETTCE--TTTT--
T ss_pred eeeehHHHHHHH--cCCCceEEccccccCCCCccchHHHHHHhhCc-----hHHHHHHHH--HHHh-hcCccccccCCCE
Confidence 244444443 233322444455543 2444444555554 53 578889998 6676 4789999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCcccccccccc
Q 008743 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 465 (555)
Q Consensus 400 v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~ 465 (555)
+++.|+++. +.++++||++|+.+..++++|+++.+.+
T Consensus 261 ~~i~dll~~-----------------------------~~~~~lR~~~l~~hYr~~l~~s~~~l~~ 297 (300)
T PF01406_consen 261 ITIRDLLKK-----------------------------YSPDALRLFLLSTHYRKPLNFSEENLEE 297 (300)
T ss_dssp -BHHHHHTT-----------------------------S-HHHHHHHHHTS-TTS-EEE-HHHHHH
T ss_pred EEHHHHhhc-----------------------------CCHHHHHHHHhcCCCCCccccCHHHHHH
Confidence 999999986 6889999999999999999999987754
No 29
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.92 E-value=3.6e-24 Score=221.37 Aligned_cols=253 Identities=17% Similarity=0.136 Sum_probs=179.1
Q ss_pred eEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHH
Q 008743 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (555)
Q Consensus 129 ~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (555)
|.+|.-.-|||+|++||||+|+.++.|+|+|.++..||+|.....++|.|..+...+... ....
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~----~~~~------------ 64 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK----GGRK------------ 64 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHh----cCcc------------
Confidence 357778999999999999999999999999999999999999999999998776543211 0000
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee-----cccccCCcHHHHH
Q 008743 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-----GESFYNPYIPGVI 283 (555)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~-----~es~~~~~~~~v~ 283 (555)
....+ ..+..+.++++++...+.|++++++|||.+||. .+..|.+.+.+++
T Consensus 65 --------~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f 120 (312)
T cd00668 65 --------KKTIW----------------IEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120 (312)
T ss_pred --------ccccc----------------HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHH
Confidence 00111 002234556778889999999999999999843 1235567899999
Q ss_pred HHHHhCCCeee------ecceEEEEec------------CC----------------CCCeEEEecC--Cc-----cccc
Q 008743 284 DELSKQGLVEE------SQGARVIFIE------------GV----------------NIPLIIVKSD--GG-----FNYA 322 (555)
Q Consensus 284 ~~L~~~g~~~~------~dGa~~~~~~------------g~----------------~~d~vl~ksD--G~-----~tY~ 322 (555)
+.|.++|++|+ .+...|++++ +. ..|..|-|.- |. .+|+
T Consensus 121 ~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P~~~i~~ 200 (312)
T cd00668 121 SRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLPEDVFDV 200 (312)
T ss_pred HHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCCcccccc
Confidence 99999999999 4556666653 11 1244454431 22 2333
Q ss_pred chhHH--HHH---HHh-----h-hcCCCeEEEEeeCCcc-ccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCc
Q 008743 323 STDLA--ALW---YRL-----N-EEKAEWIIYVTDVGQQ-LHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 390 (555)
Q Consensus 323 ~~DiA--~~~---~r~-----~-~~~~d~iI~V~g~dq~-~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~ 390 (555)
--|-+ +.. +.. . .++. -|++.|.||. .|+....+++.++|... ++. .|+.+|+|+..+|+
T Consensus 201 Wfds~~~~~~~~~~~~~~~~~~~~~~~--di~~~G~D~~~~h~~~~~~~~~~~~~~~---~~~---~~~~~g~~~~~~g~ 272 (312)
T cd00668 201 WFDSGIGPLGSLGYPEEKEWFKDSYPA--DWHLIGKDILRGWANFWITMLVALFGEI---PPK---NLLVHGFVLDEGGQ 272 (312)
T ss_pred hhhccHHHHHHcCCCccchhhhhcCCc--eEEEEecchhhhHHHHHHHHHHHhcCCC---Ccc---eeEECcEEEcCCCc
Confidence 22211 111 100 0 0223 4889999998 78888888888887531 122 44456899988779
Q ss_pred cceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccC-CCCCccc
Q 008743 391 RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTF 458 (555)
Q Consensus 391 kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~F 458 (555)
|||||+||+|+++|++++ +|++|+||++++.. +.+|.+|
T Consensus 273 KmSKS~gn~v~~~d~~~~-----------------------------~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 273 KMSKSKGNVIDPSDVVEK-----------------------------YGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred cccccCCCcCCHHHHHHH-----------------------------cCcHHHHHHHHhcCCccCCCCC
Confidence 999999999999999998 79999999999987 4666655
No 30
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.91 E-value=2.7e-23 Score=215.34 Aligned_cols=256 Identities=19% Similarity=0.247 Sum_probs=175.9
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCC-CCCCcccHHHH
Q 008743 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS-EDANETAIGEL 206 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~-~~~~~~~i~~l 206 (555)
.+++| -|...|+|++||||+|..+.+|+++|.|+..|++|..++..+|+|. +.++-..+ |+. +.+.|.++..+
T Consensus 19 ~~~~v-~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~-lrKvp~~l----~~~~~~~~G~pi~~i 92 (353)
T cd00674 19 EKYVV-ASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDR-LRKVPPNV----PESYEQYIGMPLSSV 92 (353)
T ss_pred CeEEE-ecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCc-ccccccch----hhHHHHhcCccchhc
Confidence 56777 4566799999999999999999999999999999999999999976 33221000 100 01112222211
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-ccc-CC-cHHHHH
Q 008743 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NP-YIPGVI 283 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~e-s~~-~~-~~~~v~ 283 (555)
.+|. |- -..+++.+...|++.+++|||++++.+- ..| ++ ..+.+.
T Consensus 93 ------------p~p~--------------g~------~~~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~ 140 (353)
T cd00674 93 ------------PDPF--------------GC------CESYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENIL 140 (353)
T ss_pred ------------hhhc--------------CC------CHHHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHH
Confidence 1111 11 1246788889999999999999986543 344 43 456777
Q ss_pred HHHHhCCCeee--------ecceEEEEec------CCCCCeEEEecC---Ccccccch-------hHH----HHHHHhhh
Q 008743 284 DELSKQGLVEE--------SQGARVIFIE------GVNIPLIIVKSD---GGFNYAST-------DLA----ALWYRLNE 335 (555)
Q Consensus 284 ~~L~~~g~~~~--------~dGa~~~~~~------g~~~d~vl~ksD---G~~tY~~~-------DiA----~~~~r~~~ 335 (555)
..|++++.+.+ +-..-|+.+. |... ..++.-| |+.+|.+. |+- =.-||+ +
T Consensus 141 ~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg~~~-~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~-d 218 (353)
T cd00674 141 IALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCGKDT-TTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRV-D 218 (353)
T ss_pred HHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcCcce-eEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCC-C
Confidence 77888886653 1112233221 4222 2232223 56677652 221 112333 2
Q ss_pred c-------CCCeEEEEeeCCcccc---HHHHHHHHH-HcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHH
Q 008743 336 E-------KAEWIIYVTDVGQQLH---FDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 336 ~-------~~d~iI~V~g~dq~~h---f~~~~~~l~-~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
| +.| +=++|.||..| |.++..+++ .+|+.+ + .|+.||+|+..+|+|||||+||+|+++|
T Consensus 219 W~~rW~~l~Vd--~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~------P--~~~~ye~V~l~gg~KMSKSkGnvI~~~d 288 (353)
T cd00674 219 WPMRWAILGVD--FEPFGKDHASAGGSYDTGKEIAREIFGGEP------P--VPVMYEFIGLKGGGKMSSSKGNVITPSD 288 (353)
T ss_pred chhhhhhcCCC--EEeeCccccccccHHHHHHHHHHHHhCCCC------C--eEEEeeeEEeCCCCccCCCCCCcCCHHH
Confidence 2 333 45799999999 999999998 999853 2 5678899998777799999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccC-CCCCccccccc
Q 008743 405 LLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQ 462 (555)
Q Consensus 405 ll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~~~ 462 (555)
++++ ++++++||++++.. +.+++.||++.
T Consensus 289 ll~~-----------------------------~~~dalR~~~l~~~~~~~~i~Fd~~~ 318 (353)
T cd00674 289 WLEV-----------------------------APPEVLRYLYARRKNPEKHIGFDLDI 318 (353)
T ss_pred HHHH-----------------------------hChHHHHHHHHhCCCCCCCCCcChhH
Confidence 9998 68999999999988 78999999864
No 31
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.91 E-value=7.7e-24 Score=218.82 Aligned_cols=242 Identities=18% Similarity=0.175 Sum_probs=169.7
Q ss_pred eEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHH
Q 008743 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (555)
Q Consensus 129 ~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (555)
|++|-..=|+|+|++||||+|+.+++|+++|.++..|++|.....++|+|..+...+...
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~-------------------- 60 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI-------------------- 60 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc--------------------
Confidence 467888999999999999999999999999999999999999999999987654322110
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec-----ccccCCcHHHHH
Q 008743 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPGVI 283 (555)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~-----es~~~~~~~~v~ 283 (555)
..+ .+++++...+.|++.+++|||.+||.. ...|...+++++
T Consensus 61 ---------g~~------------------------~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f 107 (314)
T cd00812 61 ---------GRD------------------------PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLF 107 (314)
T ss_pred ---------CCC------------------------HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHH
Confidence 011 245678888899999999999998631 224456788899
Q ss_pred HHHHhCCCeeeecceEEEE---------e--c------------CCCCC-e---------EEEec--CCccc------cc
Q 008743 284 DELSKQGLVEESQGARVIF---------I--E------------GVNIP-L---------IIVKS--DGGFN------YA 322 (555)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~---------~--~------------g~~~d-~---------vl~ks--DG~~t------Y~ 322 (555)
..|.++|++|+.++.+++. + + ...-| . =+.|. =|.+. |.
T Consensus 108 ~~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~~~~~~~l~isR~~~wGipvP~~~~i~~ 187 (314)
T cd00812 108 LKLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIGCSRQRYWGTPIPWTDTMES 187 (314)
T ss_pred HHHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhcCcCCHHHHHHHHHHheeeeecCCcCCcCccccccc
Confidence 9999999999987766553 2 1 00000 0 01111 13321 22
Q ss_pred chhHH-----HH----------------HHHhhh-cCCCeEEEEeeCCcc----ccHHHHHHHHHHcCCCCCCCCCCCcE
Q 008743 323 STDLA-----AL----------------WYRLNE-EKAEWIIYVTDVGQQ----LHFDMVFSAAKRAGWLSADDSTYPKA 376 (555)
Q Consensus 323 ~~DiA-----~~----------------~~r~~~-~~~d~iI~V~g~dq~----~hf~~~~~~l~~lG~~~~~~~~~~~~ 376 (555)
..|-. |. ...+.. ++.| |+|+|.||. .|+..+.+++..+|+.. .++...+
T Consensus 188 w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~d--i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~--~~~~~~~ 263 (314)
T cd00812 188 LSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVD--IYIGGKEHAPNHLLYSRFNHKALFDEGLVT--DEPPKGL 263 (314)
T ss_pred ccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCe--eeecchhHHHHHHHHHHHHHHHHcCccccc--ccCcHHh
Confidence 22211 11 001111 2344 899999983 34456667777788510 0122344
Q ss_pred EEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCc
Q 008743 377 SHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNY 456 (555)
Q Consensus 377 ~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~ 456 (555)
. .+|+|+. +|+|||||+||+|+++|++++ +|+||+||++++..+ +++
T Consensus 264 ~--~~g~v~~-~g~KmSkS~Gn~v~~~dll~~-----------------------------~~~Da~R~~ll~~~~-~~~ 310 (314)
T cd00812 264 I--VQGMVLL-EGEKMSKSKGNVVTPDEAIKK-----------------------------YGADAARLYILFAAP-PDA 310 (314)
T ss_pred e--ecceEec-CccccCCcCCCCCCHHHHHHH-----------------------------hCcHHHHHHHHhcCC-cCC
Confidence 4 4588985 789999999999999999998 699999999999988 999
Q ss_pred cccc
Q 008743 457 TFSF 460 (555)
Q Consensus 457 ~Fd~ 460 (555)
+|||
T Consensus 311 ~f~~ 314 (314)
T cd00812 311 DFDW 314 (314)
T ss_pred CCCC
Confidence 9997
No 32
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.91 E-value=4.7e-23 Score=213.57 Aligned_cols=240 Identities=18% Similarity=0.228 Sum_probs=168.3
Q ss_pred eEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHH
Q 008743 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (555)
Q Consensus 129 ~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (555)
+++|--.-|+|+|++||||+|+.++.|+++|.++..|++|.....++|.|..+..-+..
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~--------------------- 59 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE--------------------- 59 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH---------------------
Confidence 35677889999999999999999999999999999999999999999988765432210
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee---cccccCCcHHHHHHH
Q 008743 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPGVIDE 285 (555)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~---~es~~~~~~~~v~~~ 285 (555)
...+ .+++++.+.+.|+++|++|||.||.+ +++.+.+.+++++++
T Consensus 60 --------~g~~------------------------~~e~~~~~~~~~~~~l~~LgI~~D~~~~tt~~~~~~~v~~i~~~ 107 (319)
T cd00814 60 --------EGVT------------------------PQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKK 107 (319)
T ss_pred --------cCCC------------------------HHHHHHHHHHHHHHHHHHcCCcCCCCeeCCCHHHHHHHHHHHHH
Confidence 0011 24578888999999999999999733 344577789999999
Q ss_pred HHhCCCeeeec-------------------ceEEEEec------------CC-------------------CCCeEEEec
Q 008743 286 LSKQGLVEESQ-------------------GARVIFIE------------GV-------------------NIPLIIVKS 315 (555)
Q Consensus 286 L~~~g~~~~~d-------------------Ga~~~~~~------------g~-------------------~~d~vl~ks 315 (555)
|.++|++|+.+ ..++|+++ +. ..|.-|.|.
T Consensus 108 L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~ 187 (319)
T cd00814 108 LYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRD 187 (319)
T ss_pred HHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCcc
Confidence 99999999754 33334442 00 012222221
Q ss_pred -----------CCcccccchhHH--HHH------HHh-----hhcCCCeEEEEeeCCccccHHHHH-HHHHHcCCCCCCC
Q 008743 316 -----------DGGFNYASTDLA--ALW------YRL-----NEEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADD 370 (555)
Q Consensus 316 -----------DG~~tY~~~DiA--~~~------~r~-----~~~~~d~iI~V~g~dq~~hf~~~~-~~l~~lG~~~~~~ 370 (555)
.|...|+--|.. |.- ++. ...+....+++.|.|+..++...+ +++.++|++
T Consensus 188 ~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~~---- 263 (319)
T cd00814 188 LFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGAGLP---- 263 (319)
T ss_pred CcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhCCCC----
Confidence 123445544421 110 000 001223568999999877555555 456778874
Q ss_pred CCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhcc
Q 008743 371 STYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN 450 (555)
Q Consensus 371 ~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~ 450 (555)
+...+. .+|+++. +|+|||||+||+|++.|++++ +|+|++||++++.
T Consensus 264 -~~~~~~--~~~~~~~-~g~kmSkS~gn~i~~~~~l~~-----------------------------~~~d~~R~~l~~~ 310 (319)
T cd00814 264 -LPTRIV--AHGYLTV-EGKKMSKSRGNVVDPDDLLER-----------------------------YGADALRYYLLRE 310 (319)
T ss_pred -CCcEee--eeeeEEE-CCeeecccCCcccCHHHHHHH-----------------------------cCchHHHHHHHhc
Confidence 233443 3578875 589999999999999999998 7999999999998
Q ss_pred CC-CCCccc
Q 008743 451 NR-LTNYTF 458 (555)
Q Consensus 451 ~~-~~~~~F 458 (555)
.+ .+|.+|
T Consensus 311 ~~~~~d~~f 319 (319)
T cd00814 311 RPEGKDSDF 319 (319)
T ss_pred CCCCCCCCC
Confidence 76 566665
No 33
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=2.4e-21 Score=224.88 Aligned_cols=135 Identities=20% Similarity=0.214 Sum_probs=102.9
Q ss_pred EEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhcc-CCCCCcc
Q 008743 379 VGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYT 457 (555)
Q Consensus 379 v~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~-~~~~~~~ 457 (555)
+.+|+|++.+|+|||||+||+|++.|++++ +|+||+||++++. .+.+|++
T Consensus 508 ~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~-----------------------------yGaDalR~~ll~~~~~~~Di~ 558 (874)
T PRK05729 508 YIHGLVRDEQGRKMSKSKGNVIDPLDLIDK-----------------------------YGADALRFTLAALASPGRDIR 558 (874)
T ss_pred EEeeeEECCCCCCcccCCCCCCCHHHHHHH-----------------------------hChHHHHHHHHhCCCCCCCce
Confidence 345899988999999999999999999998 7999999999988 4688999
Q ss_pred ccccccccccCChhHHHHHHHHHHHHHH-HhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHH
Q 008743 458 FSFDQMLNDKGNTAVYLLYAHARICSII-RKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCE 536 (555)
Q Consensus 458 Fd~~~~~~~~~n~~~ylqYa~aR~~sil-rk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~ 536 (555)
||++.+.... +..+-+-+ .+|.+++. .+.... ..+. ... .++.++.++.++..+.+.+.+++++++++.+++
T Consensus 559 fs~~~l~~~~-~~~nkl~N-~~Rf~~~~~~~~~~~--~~~~--~~~-~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~ 631 (874)
T PRK05729 559 FDEERVEGYR-NFANKLWN-ASRFVLMNLEGADVG--ELPD--PEE-LSLADRWILSRLNRTVAEVTEALDKYRFDEAAR 631 (874)
T ss_pred eCHHHHHHHH-HHHHHHHH-HHHHHHHhcccCCcc--cccc--ccc-CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 9999975543 33333333 56766542 211111 1110 011 246678899999999999999999999999999
Q ss_pred HHHHHH-HHHhccc
Q 008743 537 YLYNLS-EYFTRFY 549 (555)
Q Consensus 537 yl~~La-~~fn~fY 549 (555)
.+++++ ..|.++|
T Consensus 632 ~l~~f~~~~~~~~Y 645 (874)
T PRK05729 632 ALYEFIWNEFCDWY 645 (874)
T ss_pred HHHHHHHHHHHHHH
Confidence 999998 5677666
No 34
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.89 E-value=1.4e-22 Score=218.79 Aligned_cols=138 Identities=17% Similarity=0.252 Sum_probs=112.2
Q ss_pred CCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECC
Q 008743 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (555)
Q Consensus 308 ~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~ 387 (555)
.|+||+||||+|||. +|++.++. ..+++++| +|.||..|+++++.++++||+. .+.+.|+++ +.+.
T Consensus 172 ~D~Vl~RsdG~ptY~---~A~~vdD~-~~~ithvI--rG~d~~~~t~~~~~l~~aLg~~------~p~~~H~p~--l~~~ 237 (470)
T TIGR00464 172 DDFVILRSDGSPTYN---FAVVVDDY-LMKITHVI--RGEDHISNTPKQILIYQALGWK------IPVFAHLPM--ILDE 237 (470)
T ss_pred CCeEEEecCCCcccc---cHHHHHHH-hCCCCEEE--ECchhhcCHHHHHHHHHHcCCC------CCeEEEEee--eecC
Confidence 589999999999999 89999998 57999997 9999999999999999999984 468999987 4558
Q ss_pred CCccceeccCCccchHHHHHHHH-HHHHHHHHHhcCCCCCCHH---HHHHHHHhhhhhhHHHhhhccCCCCCcccccccc
Q 008743 388 DGKRLRTRFSEVVRLVDLLDEAK-NRSKAVLIERGKDKEWTEE---ELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQM 463 (555)
Q Consensus 388 ~G~kmSkR~G~~v~l~dll~e~~-~~a~~~~~~~~~~~~~~~~---~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~ 463 (555)
+|+|||||+| .+++++|+++++ ..|......+ .+|++. +... ..+++++|+|+..+.+++.|||+++
T Consensus 238 ~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~---lG~~~~~~~e~~~-----~~~~i~~f~l~~~~~~~~~fd~~kL 308 (470)
T TIGR00464 238 DGKKLSKRDG-ATSIMQFKEQGYLPEALINYLAL---LGWSPPDDQEFFS-----LEELIEIFSLNRVSKSPAKFDWKKL 308 (470)
T ss_pred CCccccccCC-CccHHHHHHCCCCHHHHHHHHHH---cCCCCCCccccCC-----HHHHHHhcCcccCCCCCCeecHHHH
Confidence 8999999999 889999999984 3555544433 223221 1111 2378999999999999999999998
Q ss_pred ccccC
Q 008743 464 LNDKG 468 (555)
Q Consensus 464 ~~~~~ 468 (555)
..+|+
T Consensus 309 ~~~N~ 313 (470)
T TIGR00464 309 QWLNA 313 (470)
T ss_pred HHHHH
Confidence 77774
No 35
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.89 E-value=5e-22 Score=207.22 Aligned_cols=256 Identities=18% Similarity=0.180 Sum_probs=169.1
Q ss_pred eEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHH
Q 008743 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (555)
Q Consensus 129 ~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (555)
+..|--.-|||+|++||||+|+.++.|+++|.++..||+|.....++|+|..+..-+.. ..+-.. ...+.+
T Consensus 2 ~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k---~lg~~~---~~~~~~--- 72 (338)
T cd00818 2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEK---ELGISG---KKDIEK--- 72 (338)
T ss_pred CeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHH---HhCCCC---Ccchhh---
Confidence 45666788999999999999999999999999999999999999999999988654321 111000 000000
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee-----cccccCCcHHHHH
Q 008743 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-----GESFYNPYIPGVI 283 (555)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~-----~es~~~~~~~~v~ 283 (555)
. +-.+..+.++++++.+.+.|.+.+++|||.++|. .+..|.+.+.+++
T Consensus 73 ----------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f 125 (338)
T cd00818 73 ----------M-----------------GIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVF 125 (338)
T ss_pred ----------c-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHH
Confidence 0 0112334567788999999999999999977532 2446677899999
Q ss_pred HHHHhCCCeeeecceEEEEec-----------------------C-----------------CCCCeEE-----------
Q 008743 284 DELSKQGLVEESQGARVIFIE-----------------------G-----------------VNIPLII----------- 312 (555)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~-----------------------g-----------------~~~d~vl----------- 312 (555)
.+|.++|++|+.++-+++.+. . .-.|..|
T Consensus 126 ~~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P 205 (338)
T cd00818 126 KQLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIP 205 (338)
T ss_pred HHHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHHHHHHHHHhcCcEECHHHHHHHHHHHhcchhcceeeecccCceee
Confidence 999999999987765544321 0 0011111
Q ss_pred ---EecC--------CcccccchhH-----HHHHH-----Hhhh-cCCCeEEEEeeCCccc-cHHHHH-HHHHHcCCCCC
Q 008743 313 ---VKSD--------GGFNYASTDL-----AALWY-----RLNE-EKAEWIIYVTDVGQQL-HFDMVF-SAAKRAGWLSA 368 (555)
Q Consensus 313 ---~ksD--------G~~tY~~~Di-----A~~~~-----r~~~-~~~d~iI~V~g~dq~~-hf~~~~-~~l~~lG~~~~ 368 (555)
..++ ....|+--|- +..-+ .++. |+.| +.+.|.|+.. ||..+. .++...|..
T Consensus 206 ~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d--~~~~GkDii~~wf~~~~~~~~~~~~~~-- 281 (338)
T cd00818 206 VWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPAD--FILEGSDQTRGWFYSLLLLSTALFGKA-- 281 (338)
T ss_pred EEEecCCCeEEEecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCe--EEeecchHHhHHHHHHHHHHHHhcCCC--
Confidence 1122 1133332121 11101 1111 3344 5578999874 666544 323344543
Q ss_pred CCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhh
Q 008743 369 DDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL 448 (555)
Q Consensus 369 ~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L 448 (555)
++..-+. .|+++..+|+|||||+||+|+++|++++ +|+|++||+++
T Consensus 282 --p~~~~~~---hg~~~~~~g~KmSKS~gn~i~~~~~~~~-----------------------------~~~D~~R~~l~ 327 (338)
T cd00818 282 --PYKNVIV---HGFVLDEDGRKMSKSLGNYVDPQEVVDK-----------------------------YGADALRLWVA 327 (338)
T ss_pred --ccceEEE---EeeEECCCCCCCCCCCCCcCCHHHHHHH-----------------------------cCcHHHHHHHH
Confidence 2233334 4788877899999999999999999998 79999999999
Q ss_pred ccC-CCCCccc
Q 008743 449 KNN-RLTNYTF 458 (555)
Q Consensus 449 ~~~-~~~~~~F 458 (555)
+.. ..+|+.|
T Consensus 328 ~~~~~~~d~~~ 338 (338)
T cd00818 328 SSDVYAEDLRF 338 (338)
T ss_pred hCCCccCCCCC
Confidence 987 4677654
No 36
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.88 E-value=7.2e-21 Score=219.41 Aligned_cols=128 Identities=18% Similarity=0.265 Sum_probs=98.1
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHH
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (555)
+++.+|...-|||||+|||||+++.+++|+++|.++..||+|......+.+|..+...+... .+- ....
T Consensus 37 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~---~g~----~~~~---- 105 (800)
T PRK13208 37 KPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKY---YGI----RKDD---- 105 (800)
T ss_pred CCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHH---hCC----Cccc----
Confidence 46789989999999999999999999999999999999999999999999998876543211 010 0000
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec-----ccccCCcHHH
Q 008743 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPG 281 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~-----es~~~~~~~~ 281 (555)
+ |.++..+..+++++.....+++.+++||+.+||.. +..|...++.
T Consensus 106 ----------~-------------------~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~ 156 (800)
T PRK13208 106 ----------I-------------------SREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQK 156 (800)
T ss_pred ----------C-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHH
Confidence 0 00122233345678888889999999999999743 3355668999
Q ss_pred HHHHHHhCCCeee
Q 008743 282 VIDELSKQGLVEE 294 (555)
Q Consensus 282 v~~~L~~~g~~~~ 294 (555)
++..|.++|++|+
T Consensus 157 ~f~~L~~~Gliy~ 169 (800)
T PRK13208 157 SFLDLYKKGLIYR 169 (800)
T ss_pred HHHHHHHCCCeee
Confidence 9999999999996
No 37
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.88 E-value=1e-21 Score=208.10 Aligned_cols=132 Identities=19% Similarity=0.214 Sum_probs=99.9
Q ss_pred eEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHH
Q 008743 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (555)
Q Consensus 129 ~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (555)
+.+|...-|+|+|++||||+|+.++.|+++|.++..|++|......+|.|..+...+.... +. .+..+.
T Consensus 2 ~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~---~~----~~~~~~---- 70 (382)
T cd00817 2 VFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKL---GI----EGKTRH---- 70 (382)
T ss_pred cEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHh---cc----cccchh----
Confidence 4678899999999999999999999999999999999999999999999998865542210 00 000000
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee-----cccccCCcHHHHH
Q 008743 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-----GESFYNPYIPGVI 283 (555)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~-----~es~~~~~~~~v~ 283 (555)
+.++ .+.++..+++++.+.+.+++.+++|||.+||. .+..|.+.+++++
T Consensus 71 ---------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 124 (382)
T cd00817 71 ---------DLGR-----------------EEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAF 124 (382)
T ss_pred ---------cCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHH
Confidence 0111 12234456678888899999999999999852 2335567899999
Q ss_pred HHHHhCCCeeeecc
Q 008743 284 DELSKQGLVEESQG 297 (555)
Q Consensus 284 ~~L~~~g~~~~~dG 297 (555)
..|.++|++|+...
T Consensus 125 ~~L~~~G~iy~~~~ 138 (382)
T cd00817 125 VRLYEKGLIYRDNR 138 (382)
T ss_pred HHHHHCCCEEeeee
Confidence 99999999997543
No 38
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.88 E-value=6.1e-23 Score=221.68 Aligned_cols=137 Identities=18% Similarity=0.251 Sum_probs=109.7
Q ss_pred CCeEEEecCCcccccchhH-HHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEEC
Q 008743 308 IPLIIVKSDGGFNYASTDL-AALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG 386 (555)
Q Consensus 308 ~d~vl~ksDG~~tY~~~Di-A~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~ 386 (555)
.|.||+||||+|||.++|+ +.|.+ +++|+| +|.||..|++++..++++||+. .+.+.|+++ +.+
T Consensus 182 ~D~Vl~RsDG~ptY~~a~vVdD~~~-----~ithvI--rG~d~~~~t~~q~~l~~alG~~------~p~~~H~pl--i~~ 246 (476)
T PRK01406 182 DDFVILRSDGTPTYNFAVVVDDHLM-----GITHVI--RGEDHLSNTPKQILLYEALGWE------VPVFAHLPL--ILG 246 (476)
T ss_pred CCcEEEecCCCccccchHHHHHHHc-----CCCEEE--ECchhhcCHHHHHHHHHHhCCC------CCeEEEeee--eeC
Confidence 5899999999999999998 66654 458997 9999999999999999999984 468999977 556
Q ss_pred CCCccceeccCCccchHHHHHHHH-HHHHHHHHHhcCCCCCCH--HHHHHHHHhhhhhhHHHhhhccCCCCCcccccccc
Q 008743 387 EDGKRLRTRFSEVVRLVDLLDEAK-NRSKAVLIERGKDKEWTE--EELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQM 463 (555)
Q Consensus 387 ~~G~kmSkR~G~~v~l~dll~e~~-~~a~~~~~~~~~~~~~~~--~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~ 463 (555)
.+|+|||||+| .+++++++++++ ..|......+ .+|++ +++.. -.+++++|+|+..+.+++.|||+++
T Consensus 247 ~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~---lG~s~~~~e~~~-----~~~~i~~f~l~~~~~s~~~fd~~kL 317 (476)
T PRK01406 247 PDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLAL---LGWSHGDQEIFS-----LEELIELFDLERVSKSPARFDIKKL 317 (476)
T ss_pred CCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHH---hCCCCCccccCC-----HHHHHHhcChhhCCCCCccccHHHH
Confidence 88999999999 789999999984 3454444333 22332 11111 1378999999999999999999999
Q ss_pred ccccC
Q 008743 464 LNDKG 468 (555)
Q Consensus 464 ~~~~~ 468 (555)
..+|+
T Consensus 318 ~~~N~ 322 (476)
T PRK01406 318 DWLNG 322 (476)
T ss_pred HHHHH
Confidence 88875
No 39
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.88 E-value=1.4e-20 Score=218.70 Aligned_cols=131 Identities=20% Similarity=0.222 Sum_probs=98.9
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHH
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (555)
.++.+|-..-||+||+|||||+++.++.|+++|..|..||+|.+....+.+|..+...+... .... +....+
T Consensus 32 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~---~~~~----g~~~~~- 103 (861)
T TIGR00422 32 KPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKK---LGAE----GKTKHD- 103 (861)
T ss_pred CCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHH---hccc----CCchhh-
Confidence 46688889999999999999999999999999999999999999999999998776554221 1100 000000
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----cccCCcHHH
Q 008743 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~e-----s~~~~~~~~ 281 (555)
-|.++..+..+++++.+...+++.+++||+.+||..+ ..|...++.
T Consensus 104 -----------------------------~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~ 154 (861)
T TIGR00422 104 -----------------------------LGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKE 154 (861)
T ss_pred -----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHH
Confidence 0111223344556777888899999999999998532 345567999
Q ss_pred HHHHHHhCCCeee
Q 008743 282 VIDELSKQGLVEE 294 (555)
Q Consensus 282 v~~~L~~~g~~~~ 294 (555)
++..|.++|++|+
T Consensus 155 ~F~~L~~~GlIy~ 167 (861)
T TIGR00422 155 AFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHCCCeee
Confidence 9999999999996
No 40
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.88 E-value=2.4e-21 Score=188.57 Aligned_cols=194 Identities=18% Similarity=0.190 Sum_probs=146.5
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008743 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
.++++-+.-|+|.|.+++||||+|+.++.|+|+|.++..|++|.....++|.|..+..-+..
T Consensus 17 ~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~------------------ 78 (213)
T cd00672 17 NPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE------------------ 78 (213)
T ss_pred CCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHH------------------
Confidence 35678899999999999999999999999999999999999999999999988765432210
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeecccccCCcHHHHHH
Q 008743 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGESFYNPYIPGVID 284 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-~~~~es~~~~~~~~v~~ 284 (555)
. ..+ ++++++...+.|++++++|||++ +.+.-.
T Consensus 79 ----------~-g~~------------------------p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt----------- 112 (213)
T cd00672 79 ----------E-GLS------------------------WKEVADYYTKEFFEDMKALNVLPPDVVPRV----------- 112 (213)
T ss_pred ----------c-CCC------------------------HHHHHHHHHHHHHHHHHHcCCCCCCcceee-----------
Confidence 0 011 34567777888999999999998 543222
Q ss_pred HHHhCCCeeeecceEEEEecCCCCCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccc-cHHHHHHHHHH-
Q 008743 285 ELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQL-HFDMVFSAAKR- 362 (555)
Q Consensus 285 ~L~~~g~~~~~dGa~~~~~~g~~~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~-hf~~~~~~l~~- 362 (555)
++.- +++...+.....+| |.+.|.|+.. |.........+
T Consensus 113 ------------------------------------Wh~e-c~am~~~~lg~~~d--ih~~G~Dl~fpH~~~~~a~~~a~ 153 (213)
T cd00672 113 ------------------------------------WHIE-CSAMAMKYLGETFD--IHGGGVDLIFPHHENEIAQSEAA 153 (213)
T ss_pred ------------------------------------hhHH-HHHHHHHHcCCCcc--EEeecCCCCcChHHHHHHHHHHH
Confidence 4544 33333333233455 5567777643 55555444444
Q ss_pred cCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhh
Q 008743 363 AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGA 442 (555)
Q Consensus 363 lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~a 442 (555)
.|. +++..+.|. |+|. .+|+|||||+||+|+++|++++ +|+++
T Consensus 154 ~g~-----~~~~~~~h~--~~v~-~~g~KMSKs~Gn~v~~~dll~~-----------------------------~~~da 196 (213)
T cd00672 154 TGK-----PFARYWLHT--GHLT-IDGEKMSKSLGNFITVRDALKK-----------------------------YDPEV 196 (213)
T ss_pred hCC-----CCCcEEEEE--EEEe-ccCcchhhcCCCccCHHHHHHH-----------------------------cCHHH
Confidence 354 356778887 7776 6788999999999999999998 79999
Q ss_pred HHHhhhccCCCCCcccc
Q 008743 443 AKYFDLKNNRLTNYTFS 459 (555)
Q Consensus 443 iry~~L~~~~~~~~~Fd 459 (555)
+||++|+..+.++++||
T Consensus 197 ~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 197 LRLALLSSHYRSPLDFS 213 (213)
T ss_pred HHHHHHhCCcCCCCCCC
Confidence 99999999999999986
No 41
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.87 E-value=5.9e-22 Score=181.63 Aligned_cols=143 Identities=22% Similarity=0.209 Sum_probs=117.9
Q ss_pred EEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHH
Q 008743 132 VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYR 211 (555)
Q Consensus 132 Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~ 211 (555)
|++|+|||+|++||||+|+++++|+++|.|+..|++|...++++|+|.|++..+.. .
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~-----------~------------ 57 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANK-----------K------------ 57 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHh-----------c------------
Confidence 57999999999999999999999999999999999999999999999998755311 0
Q ss_pred HHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCcHHHHHHHHHhCCC
Q 008743 212 RSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGL 291 (555)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~es~~~~~~~~v~~~L~~~g~ 291 (555)
...|+++++.+.+.|++.|+
T Consensus 58 ------------------------------~~~~~~~~~~~~~~~~~~~~------------------------------ 77 (143)
T cd00802 58 ------------------------------GENAKAFVERWIERIKEDVE------------------------------ 77 (143)
T ss_pred ------------------------------CCCHHHHHHHHHHHHHHHHH------------------------------
Confidence 01245667777777777776
Q ss_pred eeeecceEEEEecCCCCCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCC
Q 008743 292 VEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDS 371 (555)
Q Consensus 292 ~~~~dGa~~~~~~g~~~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~ 371 (555)
|.+.+.|...++...+ +.++++|.||..|+++.+.+++++|..
T Consensus 78 -----------------------------y~~~~~a~~~~~~~~~---~~i~~~G~Dq~~h~~~~~~i~~~~~~~----- 120 (143)
T cd00802 78 -----------------------------YMFLQAADFLLLYETE---CDIHLGGSDQLGHIELGLELLKKAGGP----- 120 (143)
T ss_pred -----------------------------HHHHHHHHHHHHhhCC---cEEEEechhHHHHHHHHHHHHHHhCCC-----
Confidence 9999999877765333 678999999999999999999999863
Q ss_pred CCCcEEEEEeeEEECCCCccceecc
Q 008743 372 TYPKASHVGFGLVLGEDGKRLRTRF 396 (555)
Q Consensus 372 ~~~~~~Hv~~g~v~~~~G~kmSkR~ 396 (555)
.. ..|+.||+|.+.+|+|||||+
T Consensus 121 ~~--p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 121 AR--PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred CC--ceEEEeCCeECCCCCcCCCCC
Confidence 22 356667999988889999995
No 42
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=99.86 E-value=4.9e-22 Score=184.92 Aligned_cols=119 Identities=45% Similarity=0.802 Sum_probs=104.7
Q ss_pred hhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHh
Q 008743 437 AVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLL 516 (555)
Q Consensus 437 ~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~ 516 (555)
++|++|+||++|++.+.++++|||+++++++||+++|+||+|+|++||++|+....+.....+...+.++.|++|+..+.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~ 81 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLA 81 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999986311100012223456889999999999
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccccCC
Q 008743 517 HFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 555 (555)
Q Consensus 517 ~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~Vl 555 (555)
.+|+++..++++.+|+.++.||.+|+..||+||++|+|+
T Consensus 82 ~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~V~ 120 (156)
T cd07956 82 KFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPVL 120 (156)
T ss_pred HhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999999985
No 43
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.86 E-value=2.6e-20 Score=203.27 Aligned_cols=255 Identities=16% Similarity=0.215 Sum_probs=167.7
Q ss_pred eEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCC---CCCCcccHHH
Q 008743 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS---EDANETAIGE 205 (555)
Q Consensus 129 ~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~---~~~~~~~i~~ 205 (555)
.++| -|+..|+|++||||+|..+.+|+++|.|+..|++|..++..+|+|. +..+ ....|.. ..+.|.++..
T Consensus 24 ~~~~-~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~-lRkv----p~~~p~~~~~~~~~G~pl~~ 97 (510)
T PRK00750 24 PVVV-ETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDG-LRKV----PDNVPNQEMLEEYLGKPLTE 97 (510)
T ss_pred cEEE-EeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCc-cccc----CCCCCchHHHHHhcCccccc
Confidence 3777 4555799999999999999999999999999999999999999986 1111 0000110 0011111111
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-ccc-CC-cHHHH
Q 008743 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NP-YIPGV 282 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~e-s~~-~~-~~~~v 282 (555)
-.+|. |. -+.+++.+...|.+.+++|||++++++. ..| ++ ..+.+
T Consensus 98 ------------~p~p~--------------G~------~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i 145 (510)
T PRK00750 98 ------------IPDPF--------------GC------HESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAI 145 (510)
T ss_pred ------------CCCCC--------------CC------chHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHH
Confidence 01221 21 2456888899999999999999985543 444 33 34455
Q ss_pred HHHHHhCCCeee--------ecceEEEEec------CCCCCeEEEecC---Ccccccch-------hHHH----HHHHh-
Q 008743 283 IDELSKQGLVEE--------SQGARVIFIE------GVNIPLIIVKSD---GGFNYAST-------DLAA----LWYRL- 333 (555)
Q Consensus 283 ~~~L~~~g~~~~--------~dGa~~~~~~------g~~~d~vl~ksD---G~~tY~~~-------DiA~----~~~r~- 333 (555)
...|++++.+.+ +-..-|+.+. |.....+++.-| |+.+|.+. |+-- .-||+
T Consensus 146 ~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g~~KL~Wr~d 225 (510)
T PRK00750 146 LTALENRDEIMEILLPYLGEERQATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGGHGKLQWKVD 225 (510)
T ss_pred HHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCCCcccCCCCC
Confidence 555666665442 1122243322 443333332222 45677542 1210 11222
Q ss_pred -----hhcCCCeEEEEeeCCccc-cHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHH
Q 008743 334 -----NEEKAEWIIYVTDVGQQL-HFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 406 (555)
Q Consensus 334 -----~~~~~d~iI~V~g~dq~~-hf~~~~~~l~-~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll 406 (555)
.-.+.| +-+.|.||.. ++.....+++ .+|+.+ + .|+.||+|++.+|+|||||+||+|++.|++
T Consensus 226 W~~rW~~l~Vd--~e~~GkDh~~~s~~~~~~i~~~ilg~~~------P--~~~~y~~v~~~~G~KMSKSkGN~i~~~d~l 295 (510)
T PRK00750 226 WPMRWAALGVD--FEPFGKDHASASYDTSKKIAREILGGEP------P--EPFVYELFLDKKGEKISKSKGNVITIEDWL 295 (510)
T ss_pred cHHHHHHcCCC--EEeeCcccCcchHHHHHHHHHHHcCCCC------C--eeeeeeeEEeCCCCcccccCCCccCHHHHH
Confidence 113444 5579999999 9999999998 999853 2 345679999877999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhh-ccCCCCCccccc
Q 008743 407 DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL-KNNRLTNYTFSF 460 (555)
Q Consensus 407 ~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L-~~~~~~~~~Fd~ 460 (555)
+. ++++++|||++ +..+.++++|++
T Consensus 296 ~~-----------------------------~~pd~lR~~l~~~~~~~~~~~f~~ 321 (510)
T PRK00750 296 EY-----------------------------APPESLRLFMFARPKPAKRLDFDV 321 (510)
T ss_pred HH-----------------------------CCHHHHHHHHHhCCCCCCCCcccH
Confidence 87 68999997777 556789999988
No 44
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.1e-19 Score=198.56 Aligned_cols=139 Identities=20% Similarity=0.237 Sum_probs=104.7
Q ss_pred CCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhcc
Q 008743 371 STYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN 450 (555)
Q Consensus 371 ~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~ 450 (555)
|+...+.| |+|.+++|+|||||+||+|++.|++++ +|+||+||++.+.
T Consensus 508 PFk~V~ih---GLVrDe~G~KMSKS~GNvIDP~d~I~~-----------------------------yGaDAlRf~la~~ 555 (877)
T COG0525 508 PFKDVYIH---GLVRDEQGRKMSKSKGNVIDPLDVIDK-----------------------------YGADALRFTLASL 555 (877)
T ss_pred CccEEEEe---eeEEcCCCCCCcccCCCcCCHHHHHHH-----------------------------hChHHHHHHHHhc
Confidence 45555555 999999999999999999999999998 7999999999998
Q ss_pred -CCCCCccccccccccccCChhHHHHHHHHHHHHHH-HhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHh
Q 008743 451 -NRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSII-RKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTN 528 (555)
Q Consensus 451 -~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~sil-rk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~ 528 (555)
++..|+.||++++..- .|.++-+ +..+|...+. .+.... .. .. ...++.+++++..+.+....+.+++++
T Consensus 556 ~~~G~Di~~~~~~~~~~-rnF~nKl-WNa~Rfv~~~~~~~~~~--~~---~~-~~~~~~drWIls~l~~~v~~v~~~ld~ 627 (877)
T COG0525 556 ASPGRDINFDEKRVEGY-RNFLNKL-WNATRFVLMNLDDLGPD--DL---DL-LALSLADRWILSRLNETVKEVTEALDN 627 (877)
T ss_pred cCCCcccCcCHHHHHHH-HHHHHHH-HhHHHHHHhcccccCcc--cc---cc-cccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999988541 1222222 4445655442 221110 00 00 111577899999999999999999999
Q ss_pred cchHHHHHHHHHHH-HHHhccc
Q 008743 529 LLPNVVCEYLYNLS-EYFTRFY 549 (555)
Q Consensus 529 ~~p~~l~~yl~~La-~~fn~fY 549 (555)
|+...+++.|+++. ..|-.+|
T Consensus 628 y~f~~a~~~ly~F~W~~fcD~Y 649 (877)
T COG0525 628 YRFDEAARALYEFIWNDFCDWY 649 (877)
T ss_pred hhHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999976 6666666
No 45
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.5e-20 Score=190.54 Aligned_cols=316 Identities=17% Similarity=0.194 Sum_probs=212.1
Q ss_pred CCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHHhccc
Q 008743 138 NIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRF 217 (555)
Q Consensus 138 Np~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~ 217 (555)
.|+-+.|+||+.++++.|+|||.-+..|-.|......+..|..+...++.- |
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatn-----------G----------------- 100 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATN-----------G----------------- 100 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhc-----------C-----------------
Confidence 577899999999999999999999999999999988888887665443220 0
Q ss_pred CCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-e--ecccccCCcHHHHHHHHHhCCCeee
Q 008743 218 DSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-E--KGESFYNPYIPGVIDELSKQGLVEE 294 (555)
Q Consensus 218 ~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~--~~es~~~~~~~~v~~~L~~~g~~~~ 294 (555)
-+| .++||..-..|.+..+..||.++ + ..+..+...+++..+.+.++|.+|.
T Consensus 101 -~~P------------------------~e~cDr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~ 155 (578)
T KOG0436|consen 101 -RNP------------------------PELCDRISQSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYR 155 (578)
T ss_pred -CCh------------------------HHHHhhhhHHHHHHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceee
Confidence 111 23566666777778888899874 2 2456666678888999999999986
Q ss_pred e--cceEEEEec---------------C------CCCCeEEEecCCcccccc----------------------------
Q 008743 295 S--QGARVIFIE---------------G------VNIPLIIVKSDGGFNYAS---------------------------- 323 (555)
Q Consensus 295 ~--dGa~~~~~~---------------g------~~~d~vl~ksDG~~tY~~---------------------------- 323 (555)
. +|.+|+.-+ | ...+++-++.| .|+.
T Consensus 156 g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~kE~---NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~q 232 (578)
T KOG0436|consen 156 GDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRKED---NYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQ 232 (578)
T ss_pred ecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEeccc---ceeeeHHhhhhHHHHHHhcCCCccCchHHHHH
Confidence 4 577776432 1 00122222222 3332
Q ss_pred ---------hhHHHHH--HHhhhc------CCCeEE-----------------------------------EEeeCCccc
Q 008743 324 ---------TDLAALW--YRLNEE------KAEWII-----------------------------------YVTDVGQQL 351 (555)
Q Consensus 324 ---------~DiA~~~--~r~~~~------~~d~iI-----------------------------------~V~g~dq~~ 351 (555)
+|+.-.. -|+ .| +....| +|+|.|-..
T Consensus 233 Vl~~lktglpDlSISRpsarl-~WGIPvP~ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlr 311 (578)
T KOG0436|consen 233 VLSWLKTGLPDLSISRPSARL-DWGIPVPGDDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILR 311 (578)
T ss_pred HHHHHHcCCCcccccChhhhc-ccCCCCCCCCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhh
Confidence 1111000 000 11 112334 445555322
Q ss_pred cHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Q 008743 352 HFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEE 430 (555)
Q Consensus 352 hf~~~-~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~ 430 (555)
....- -+.|.++|.++ +...+.| |..+ .+|.|||||.||+|.+.++++.
T Consensus 312 FHavYWPafLmaAGlpl----P~~I~vH---ghwt-~ngmKMsKSLGNvvdP~~l~~k---------------------- 361 (578)
T KOG0436|consen 312 FHAVYWPAFLMAAGLPL----PKMIFVH---GHWT-KNGMKMSKSLGNVVDPFELVQK---------------------- 361 (578)
T ss_pred hhhhhhHHHHHhcCCCC----ccEEEEe---eeee-ecceecchhhccccCHHHHHHH----------------------
Confidence 11111 14466777742 2223444 4444 5799999999999999999998
Q ss_pred HHHHHHhhhhhhHHHhhhccC-CCCCccccccccccc-cCChhHHHHHHHHHHHH--HHHhhCC-ChhhhhhcCCCCCCc
Q 008743 431 LEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLND-KGNTAVYLLYAHARICS--IIRKSGK-DIEELKKTGSLVLDH 505 (555)
Q Consensus 431 ~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~~~~~~~-~~n~~~ylqYa~aR~~s--ilrk~~~-~~~~~~~~~~~~l~~ 505 (555)
+|+|++|||+|++. ...|.+|+.+++... |...+.-++...+|+++ +.-+... ... .+ .....
T Consensus 362 -------ygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~-~~----s~~v~ 429 (578)
T KOG0436|consen 362 -------YGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLV-VD----SPTVA 429 (578)
T ss_pred -------hCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccc-cC----Ccchh
Confidence 89999999999996 589999999999886 56777888888999998 3322111 110 00 10111
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccc
Q 008743 506 ADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 552 (555)
Q Consensus 506 ~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~ 552 (555)
.+...|...+..+|+++.+.++.+....+++.+..+..+.|.|.+..
T Consensus 430 ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlvq~~ 476 (578)
T KOG0436|consen 430 AEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLVQQR 476 (578)
T ss_pred hccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhhhhc
Confidence 22346899999999999999999999999999999999999998653
No 46
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.85 E-value=7.1e-21 Score=201.74 Aligned_cols=261 Identities=19% Similarity=0.253 Sum_probs=162.9
Q ss_pred EEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHH
Q 008743 131 VVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFY 210 (555)
Q Consensus 131 ~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y 210 (555)
+|--.=|.|+|++||||+.+.+.+|++||.+|..|++|......++.|+.+..-+..
T Consensus 2 ~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~----------------------- 58 (391)
T PF09334_consen 2 YITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEK----------------------- 58 (391)
T ss_dssp EEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHH-----------------------
T ss_pred EEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHH-----------------------
Confidence 455566899999999999999999999999999999999999999999876543311
Q ss_pred HHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec---ccccCCcHHHHHHHHH
Q 008743 211 RRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVIDELS 287 (555)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~---es~~~~~~~~v~~~L~ 287 (555)
...+| +++++.....|++.+++|||+||.+. +..|...+++++++|.
T Consensus 59 ------~g~~p------------------------~~~~~~~~~~~~~~~~~~~I~~D~F~rTt~~~h~~~v~~i~~~L~ 108 (391)
T PF09334_consen 59 ------QGIDP------------------------EEFCDKYSAKFKELLEALNISYDRFIRTTDDRHKEFVQEIFKRLY 108 (391)
T ss_dssp ------TTS-H------------------------HHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHHH
T ss_pred ------cCCCH------------------------HHHHHHHHHHHHHHHHHcCCCCcceeCCCCHHHHHHHHHHHHHHH
Confidence 01122 34677777899999999999997543 3466778999999999
Q ss_pred hCCCeeeecceEEEEec-----------C------------C--C---CCeE-------EEecCCc-------cccc---
Q 008743 288 KQGLVEESQGARVIFIE-----------G------------V--N---IPLI-------IVKSDGG-------FNYA--- 322 (555)
Q Consensus 288 ~~g~~~~~dGa~~~~~~-----------g------------~--~---~d~v-------l~ksDG~-------~tY~--- 322 (555)
++|++|+.+-..|+..+ | + + .+.- .-+..|+ ..|+
T Consensus 109 ~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L 188 (391)
T PF09334_consen 109 DNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPLEPEELINPVCKICGSPPEVREEENYFFKL 188 (391)
T ss_dssp HTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBEECCCSECEEETTTS-B-EEEEEEEEEE-G
T ss_pred hcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCcccccccCCccccccccCccccceEEEEeh
Confidence 99999975422222110 1 0 0 0000 0011111 1121
Q ss_pred -----------------------------------------------------------chhHH--HH------HHH---
Q 008743 323 -----------------------------------------------------------STDLA--AL------WYR--- 332 (555)
Q Consensus 323 -----------------------------------------------------------~~DiA--~~------~~r--- 332 (555)
.-|.. |. ..+
T Consensus 189 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~ 268 (391)
T PF09334_consen 189 SKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGD 268 (391)
T ss_dssp GGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSEEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTT
T ss_pred HHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcceeeccCCceEEEcchHHHHHHHHhccccccccc
Confidence 11100 00 000
Q ss_pred ---h-hhc---CCCeEEEEeeCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHH
Q 008743 333 ---L-NEE---KAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 333 ---~-~~~---~~d~iI~V~g~dq~~hf~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
+ .-| +-..++++.|.|...++..++ +++.++|++ +...+ +..|+++ .+|+|||||+||+|+++|
T Consensus 269 ~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~-----lP~~i--~~~~~~~-~~g~K~SkS~gn~i~~~~ 340 (391)
T PF09334_consen 269 PEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLP-----LPRRI--VVHGFLT-LDGEKMSKSRGNVIWPDD 340 (391)
T ss_dssp SHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB--------SEE--EEE--EE-ETTCCEETTTTESSBHHH
T ss_pred cchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccCC-----CCCEE--EeeeeEE-ECCeeccccCCcccCHHH
Confidence 0 001 123678888888654333333 446778884 22322 2347777 478899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCC-CCCccccccccccc-cCChhHHHHHHHHHH
Q 008743 405 LLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLND-KGNTAVYLLYAHARI 481 (555)
Q Consensus 405 ll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~~~~~Fd~~~~~~~-~~n~~~ylqYa~aR~ 481 (555)
++++ +|+|++|||+++..+ .+|.+|+|+.+.+. |++.+.-+++...|+
T Consensus 341 ~~~~-----------------------------~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 341 LLEE-----------------------------YGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp HHHH-----------------------------H-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred HHHh-----------------------------CChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 9998 799999999999876 68999999998775 555555455555675
No 47
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.84 E-value=2.3e-19 Score=208.65 Aligned_cols=168 Identities=13% Similarity=0.132 Sum_probs=118.5
Q ss_pred EEEeeCCccc-cHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHH
Q 008743 342 IYVTDVGQQL-HFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419 (555)
Q Consensus 342 I~V~g~dq~~-hf~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~ 419 (555)
+++.|.||.. ||..+. ..+...|.. ++..-+ .+|+|++.+|+|||||+||+|++.|++++
T Consensus 567 ~~i~G~Di~r~Wf~~~~~~~~~~~~~~----P~k~v~---~hG~vl~~~G~KMSKSkGNvI~p~d~i~~----------- 628 (861)
T TIGR00392 567 FILEGSDQTRGWFYSSLAIGTALFGQA----PYKNVI---THGFTLDEKGRKMSKSLGNVVDPLKVINK----------- 628 (861)
T ss_pred EEEEecchhccHHHHHHHHHHHHcCCC----ChHhhE---ecceEECCCCCCcCCCCCCCCCHHHHHHH-----------
Confidence 5677777754 444433 222334543 233233 45899988999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHHH--HHHHhhCCChhhhhh
Q 008743 420 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARIC--SIIRKSGKDIEELKK 497 (555)
Q Consensus 420 ~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~--silrk~~~~~~~~~~ 497 (555)
+|+|++||++++..+.+|++|+++.+....++....+.++..++. +.+.++......++
T Consensus 629 ------------------yGaDalR~~ll~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~- 689 (861)
T TIGR00392 629 ------------------YGADILRLYVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVA- 689 (861)
T ss_pred ------------------cCHHHHHHHHHhCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccc-
Confidence 799999999999977899999999986644434443433344443 55544321100000
Q ss_pred cCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHH-Hhccc
Q 008743 498 TGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEY-FTRFY 549 (555)
Q Consensus 498 ~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~-fn~fY 549 (555)
...+ ++.++.|+..+..+.+.+.+++++++++.+++++++++.. |+++|
T Consensus 690 --~~~l-~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Y 739 (861)
T TIGR00392 690 --VEKF-PEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWY 739 (861)
T ss_pred --cccC-CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 0112 4567889999999999999999999999999999999876 76666
No 48
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.84 E-value=6e-20 Score=197.23 Aligned_cols=139 Identities=16% Similarity=0.239 Sum_probs=110.1
Q ss_pred CCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECC
Q 008743 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (555)
Q Consensus 308 ~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~ 387 (555)
.|.||+||||+|||.++ ++.++. ..+++|+| +|.||..|++++..++++||+. .+.+.|+++ |.+.
T Consensus 171 ~D~Vi~RsDG~ptY~~a---~vVDD~-~m~ithVI--RG~d~~~~t~~q~~l~~aLG~~------~p~~~H~pl--v~~~ 236 (513)
T PRK14895 171 DDMVLLRADGTATYMLA---VVVDDH-DMGITHII--RGDDHLTNAARQLAIYQAFGYA------VPSMTHIPL--IHGA 236 (513)
T ss_pred CCcEEEEeCCCcchhhH---HHHHHH-hcCCCEEE--ECchHhhhHHHHHHHHHHcCCC------CCeEEEEEe--EEcC
Confidence 58999999999999964 778887 57999997 9999999999999999999984 468999966 8889
Q ss_pred CCccceeccCCccchHHHHHHHHH--HHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCcccccccccc
Q 008743 388 DGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 465 (555)
Q Consensus 388 ~G~kmSkR~G~~v~l~dll~e~~~--~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~ 465 (555)
+|+|||||.|.. ++.++.++++. ...+.+..-|-..+ ..|+... .+.+..|.+.....++..||++++.+
T Consensus 237 ~g~KLSKR~g~~-~i~~~r~~G~~Peai~n~la~LG~s~~--~~e~~~~-----~el~~~F~~~~v~~s~~~FD~~KL~w 308 (513)
T PRK14895 237 DGAKLSKRHGAL-GIEAYKDMGYLPESLCNYLLRLGWSHG--DDEIISM-----TQAIDWFNLDSLGKSPSKLDFAKMNS 308 (513)
T ss_pred CCCccccccCch-hHHHHHHCCCCHHHHHHHHHHhCCCCC--CcCCCCH-----HHHHhhCCHHhCcCCcCcCCHHHHHH
Confidence 999999999954 89999988874 45566654332211 1122121 23477899999888999999999998
Q ss_pred ccC
Q 008743 466 DKG 468 (555)
Q Consensus 466 ~~~ 468 (555)
+|+
T Consensus 309 lN~ 311 (513)
T PRK14895 309 LNA 311 (513)
T ss_pred HHH
Confidence 875
No 49
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=99.83 E-value=2.6e-18 Score=201.79 Aligned_cols=137 Identities=14% Similarity=0.091 Sum_probs=101.4
Q ss_pred eeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccC-CCCCcccc
Q 008743 381 FGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFS 459 (555)
Q Consensus 381 ~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd 459 (555)
+|+|++.+|+|||||+||+|++.|++++ +|+|++||++++.. ..+|++|+
T Consensus 528 hG~v~d~~G~KMSKSkGNvIdP~dvIe~-----------------------------yGaDalR~~L~~~~~~g~D~~fs 578 (1052)
T PRK14900 528 HPMVRDEKGQKMSKTKGNVIDPLVITEQ-----------------------------YGADALRFTLAALTAQGRDIKLA 578 (1052)
T ss_pred cccEECCCCCCccCCCCCCCCHHHHHHH-----------------------------hCcHHHHHHHHhcCCCCCCCccc
Confidence 3899988999999999999999999998 79999999999874 68899999
Q ss_pred ccccccccCChhHHHHHHHHHHHHHHH-hhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHH
Q 008743 460 FDQMLNDKGNTAVYLLYAHARICSIIR-KSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYL 538 (555)
Q Consensus 460 ~~~~~~~~~n~~~ylqYa~aR~~silr-k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl 538 (555)
++.+... .+...-+.+ .+|...+.. ....... .+. ...+ .+.+++++..+..+...+.+++++++++.+++.+
T Consensus 579 ~~~l~~~-~~f~nkl~N-~~R~~~~~~~~~~~~~~-~~~--~~~~-~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i 652 (1052)
T PRK14900 579 KERIEGY-RAFANKLWN-ASRFALMNLSGYQERGE-DPA--RLAR-TPADRWILARLQRAVNETVEALEAFRFNDAANAV 652 (1052)
T ss_pred HHHHHHH-HHHHHHHHH-HHHHHHHhhhccCcccc-ccc--cccc-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9987433 234444444 356665432 2111100 000 0112 3567889999999999999999999999999999
Q ss_pred HHHH--HHHhcccccc
Q 008743 539 YNLS--EYFTRFYSNC 552 (555)
Q Consensus 539 ~~La--~~fn~fY~~~ 552 (555)
+++. ...|.|++.+
T Consensus 653 ~~f~~~~~~n~Yie~~ 668 (1052)
T PRK14900 653 YAFVWHELCDWYIELA 668 (1052)
T ss_pred HHHHHHhhhHHHHHhc
Confidence 9996 4556665544
No 50
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.83 E-value=2.4e-20 Score=198.16 Aligned_cols=197 Identities=15% Similarity=0.179 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHcCCeee-eecccccCCcHHHHHHHHHhCCCeee-----------------------ecc--------
Q 008743 250 EISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELSKQGLVEE-----------------------SQG-------- 297 (555)
Q Consensus 250 ~~~~~~~~~~~~~Lgi~f~-~~~es~~~~~~~~v~~~L~~~g~~~~-----------------------~dG-------- 297 (555)
+.+.+.+.++|++|||.+| ++.||...+.+.++++.|.++|++|. .+|
T Consensus 51 ~~~~~~I~e~L~wLGI~~De~y~QSer~~~y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~ 130 (445)
T PRK12558 51 QEYADAIAEDLKWLGINWDRTFRQSDRFDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEE 130 (445)
T ss_pred HHHHHHHHHHHHHcCCCCCccccHHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHH
Confidence 4556788889999999997 66676544578899999999998883 011
Q ss_pred ------------eEEEEec-----------C-------CCCCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeC
Q 008743 298 ------------ARVIFIE-----------G-------VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDV 347 (555)
Q Consensus 298 ------------a~~~~~~-----------g-------~~~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~ 347 (555)
++-++++ | ...|.||.|+||.|||.. |..++.. ..+.+||| .|.
T Consensus 131 ~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg~PtY~f---A~vVDD~-~m~ITHVi--RG~ 204 (445)
T PRK12558 131 EKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDAASLSDPVLIRADGSYLYTL---PSVVDDI-DMGITHII--RGE 204 (445)
T ss_pred HHHhHHhcCCCceEEEecCCCceEEEEEeeeEeecccccCCCeEEEecCCCccccc---cceeccc-cCCCCEEE--ech
Confidence 1112221 1 125889999999999985 5555665 57899996 999
Q ss_pred CccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHH--HHHHHHHHhcCCCC
Q 008743 348 GQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKE 425 (555)
Q Consensus 348 dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~--~a~~~~~~~~~~~~ 425 (555)
||...-+....+.++|||. .+.+.|+ .++++++|+|||||.|. +++.++.++++. ...+.+..-|-..+
T Consensus 205 d~l~~t~~q~~l~~alg~~------~P~f~H~--pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~ 275 (445)
T PRK12558 205 DHVTNTAVQIQIFEALGAK------PPVFAHL--SLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDP 275 (445)
T ss_pred hhhhCCHHHHHHHHHhCCC------CCeEEEc--ccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCC
Confidence 9988777666889999995 4689998 56999999999999995 689999998884 55666665443221
Q ss_pred CCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccC
Q 008743 426 WTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 468 (555)
Q Consensus 426 ~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~ 468 (555)
.+++... .+.+..|++.+...++..||.+++.++|+
T Consensus 276 --~~e~~~~-----~eli~~F~l~~~~~~~~~fd~~KL~w~N~ 311 (445)
T PRK12558 276 --VEPYTSM-----EELAESFDLSSFSRAPAKFDPEDLERLNA 311 (445)
T ss_pred --CcccCCH-----HHHHHhCCHhhCCCccccCCHHHHHHHHH
Confidence 1121111 24578899999888999999999988875
No 51
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.83 E-value=4.6e-18 Score=199.18 Aligned_cols=140 Identities=17% Similarity=0.200 Sum_probs=102.0
Q ss_pred EEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCC-CCCcc
Q 008743 379 VGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYT 457 (555)
Q Consensus 379 v~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~~~~~ 457 (555)
+.+|+|++.+|+|||||+||+|++.|++++ +|+||+||++++..+ .+|++
T Consensus 580 ~~hG~Vld~~G~KMSKSlGNvIdP~dli~~-----------------------------yGaDalR~~lls~~~~~~D~~ 630 (975)
T PRK06039 580 LVHGHVLDEDGQKMSKSLGNYVDPFEVFDK-----------------------------YGADALRWYLLSSSAPWEDLR 630 (975)
T ss_pred EEeeeEECCCCCCcCCCCCCcCCHHHHHHH-----------------------------hChHHHHHHHHhCCCCCCCce
Confidence 345899988999999999999999999998 799999999999875 89999
Q ss_pred ccccccccccCChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHH
Q 008743 458 FSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEY 537 (555)
Q Consensus 458 Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~y 537 (555)
|+++.+.+...+...-+.+++.++....+-.+...... ...... .++.+++|+..+..++..+.+++++++++.+++.
T Consensus 631 fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~-~~~~~~-~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~ 708 (975)
T PRK06039 631 FSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPA-EDEVDS-LNELDRWILSRLNSLVKEVTEALDNYDITKAARA 708 (975)
T ss_pred echhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccc-cccccc-CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999554422212222233333221111001000000 000111 2567889999999999999999999999999999
Q ss_pred HHHHHHHHhccc
Q 008743 538 LYNLSEYFTRFY 549 (555)
Q Consensus 538 l~~La~~fn~fY 549 (555)
|++++..|++||
T Consensus 709 l~~f~~~lsn~Y 720 (975)
T PRK06039 709 IRDFVDDLSNWY 720 (975)
T ss_pred HHHHHHHHHHHH
Confidence 999999998888
No 52
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=4.4e-18 Score=176.56 Aligned_cols=326 Identities=15% Similarity=0.187 Sum_probs=211.6
Q ss_pred CCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHH-HCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccH
Q 008743 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI 203 (555)
Q Consensus 125 ~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~-~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i 203 (555)
.++++|-...|+|++.-.-||||+|+.|--|.|.|+|+ +.||+|+.+..|.|..-.|
T Consensus 51 ~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKI---------------------- 108 (586)
T KOG2007|consen 51 NNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKI---------------------- 108 (586)
T ss_pred CCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHH----------------------
Confidence 35778999999999999999999999999999999999 9999999999999953321
Q ss_pred HHHHHHHHHHh-cccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeecc-cccCCcHH
Q 008743 204 GELQEFYRRSK-NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIP 280 (555)
Q Consensus 204 ~~l~~~y~~~~-~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-~~~~e-s~~~~~~~ 280 (555)
..+++ +.+.+.| ..|.+.....-++|.+++.+|+|-. +..+- |.|.+.|-
T Consensus 109 ------I~RAr~~~m~e~~---------------------~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II 161 (586)
T KOG2007|consen 109 ------IKRARKEEMGEKP---------------------LSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQII 161 (586)
T ss_pred ------HHHhhhhhhccch---------------------hhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHH
Confidence 22221 0011111 2232222255688999999999986 54433 67777788
Q ss_pred HHHHHHHhCCCeeeecceEEEEecCCCC--------CeEEEecCCccc----ccchhHHHHHHHhh------------hc
Q 008743 281 GVIDELSKQGLVEESQGARVIFIEGVNI--------PLIIVKSDGGFN----YASTDLAALWYRLN------------EE 336 (555)
Q Consensus 281 ~v~~~L~~~g~~~~~dGa~~~~~~g~~~--------d~vl~ksDG~~t----Y~~~DiA~~~~r~~------------~~ 336 (555)
..++.++++|++|..||.++|++...+. ...+.-+.|... -.+.|+| +||-. ..
T Consensus 162 ~fIqkIIdnG~aY~~dGsVYFdv~kf~~~YgKL~G~~~~~~~gEg~l~ds~KR~p~DFA--LWKAsK~gEP~WeSPWG~G 239 (586)
T KOG2007|consen 162 KFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGKLVGQRKNLQEGEGVLSDSRKRSPADFA--LWKASKPGEPSWESPWGKG 239 (586)
T ss_pred HHHHHHHhCCceeeeCCcEEEecccccchhhhhcCchhhcccCcCccccccCCChhhhh--hhhhcCCCCCCCCCCCCCC
Confidence 8999999999999999999998862110 011222222211 1234555 44431 11
Q ss_pred CCCeE--------------EEEeeCCccccHH---HHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCc
Q 008743 337 KAEWI--------------IYVTDVGQQLHFD---MVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (555)
Q Consensus 337 ~~d~i--------------I~V~g~dq~~hf~---~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~ 399 (555)
.+.|. ++|.|..-.+-|+ .-.+-.++. +. .+.|..-+.|- |.+. -.|.|||||.+|+
T Consensus 240 RPGWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~-~~--~~~wVnYflHt--GhL~-i~g~KMSKSLkNF 313 (586)
T KOG2007|consen 240 RPGWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAA-FD--DSQWVNYFLHT--GHLT-INGEKMSKSLKNF 313 (586)
T ss_pred CCCceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHH-hc--CCccceeEEEc--Ceee-eccchhhhhhccc
Confidence 23333 3455544444333 222222222 11 12477888998 6666 4688999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccc---cccCChhHHHHH
Q 008743 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQML---NDKGNTAVYLLY 476 (555)
Q Consensus 400 v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~---~~~~n~~~ylqY 476 (555)
||+.|+|+. +.+.++|.++|..+..++++|+-..+. +++.-...|. |
T Consensus 314 iTIke~Lk~-----------------------------~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~~~~~ff-~ 363 (586)
T KOG2007|consen 314 ITIKEALKK-----------------------------YSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEKSLNNFF-L 363 (586)
T ss_pred eeHHHHHHh-----------------------------cCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHH-H
Confidence 999999998 789999999999999999999876443 2222111111 0
Q ss_pred HHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHH-HHhcchHHHHHHHHHHHHHHhcccc
Q 008743 477 AHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEA-LTNLLPNVVCEYLYNLSEYFTRFYS 550 (555)
Q Consensus 477 a~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a-~~~~~p~~l~~yl~~La~~fn~fY~ 550 (555)
. + ..+.+.. . +..-..+.|.+|...+......|..| ++++.-..+++.+.+|....|.|..
T Consensus 364 ~-~--~al~~~~--~--------~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~ 425 (586)
T KOG2007|consen 364 D-V--KALLRGA--K--------PFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIR 425 (586)
T ss_pred H-H--HHHHhcc--c--------hhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHHH
Confidence 0 1 1122211 0 01112567778888888777777666 4677777888888888887777664
No 53
>PLN02943 aminoacyl-tRNA ligase
Probab=99.79 E-value=1.4e-17 Score=194.15 Aligned_cols=132 Identities=14% Similarity=0.182 Sum_probs=97.5
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008743 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
++++.+|.-.-|||||+|||||+++.++.|+++|..+..||+|......+.+|..+..........
T Consensus 86 ~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~-------------- 151 (958)
T PLN02943 86 GGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLAS-------------- 151 (958)
T ss_pred CCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHH--------------
Confidence 345688888889999999999999999999999999999999999999999987665443211000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----cccCCcHH
Q 008743 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~e-----s~~~~~~~ 280 (555)
.+ .++ .+..+ ++.++..+++.+.+...+++.+++||+.+||..+ ..|...++
T Consensus 152 -------~~----~~~--~~~~r----------e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~ 208 (958)
T PLN02943 152 -------EG----IKR--TDLGR----------DEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVV 208 (958)
T ss_pred -------cC----CCh--hhCCH----------HHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHH
Confidence 00 000 00011 1223334456777888899999999999998544 34556799
Q ss_pred HHHHHHHhCCCeee
Q 008743 281 GVIDELSKQGLVEE 294 (555)
Q Consensus 281 ~v~~~L~~~g~~~~ 294 (555)
+++..|.++|++|+
T Consensus 209 ~~F~~l~~~Gliyr 222 (958)
T PLN02943 209 EAFVRLHEKGLIYQ 222 (958)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999985
No 54
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.79 E-value=2.6e-17 Score=191.55 Aligned_cols=166 Identities=16% Similarity=0.201 Sum_probs=114.0
Q ss_pred EEEeeCCccc-cHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHH
Q 008743 342 IYVTDVGQQL-HFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419 (555)
Q Consensus 342 I~V~g~dq~~-hf~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~ 419 (555)
+|+.|.||.. +|..+. ......|.. ++..-+.| |+|++.+|+|||||+||+|++.+++++
T Consensus 548 l~~~G~Di~r~Wf~~~l~~~~~~~g~~----P~k~vl~H---G~vld~~G~KMSKSlGNvIdP~~ii~~----------- 609 (912)
T PRK05743 548 LYLEGSDQHRGWFQSSLLTSVATRGKA----PYKQVLTH---GFTVDGKGRKMSKSLGNVIDPQDVIKK----------- 609 (912)
T ss_pred EEEecccccchHHHHHHHHHHHhcCCC----ccceeEEe---eeEECCCCCCCCCCCCCcCCHHHHHHh-----------
Confidence 6788888864 565433 333445654 34444444 889988999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCChhhhhh-c
Q 008743 420 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKK-T 498 (555)
Q Consensus 420 ~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~-~ 498 (555)
+|+|++||++++..+.+|++|+.+.+... .+....+.++. |. ++.... +...... .
T Consensus 610 ------------------yGaDalR~~ll~~~~~~D~~~s~~~l~~~-~~~~~kl~N~~-rf--~~~nl~-~~~~~~~~~ 666 (912)
T PRK05743 610 ------------------YGADILRLWVASTDYSGDVRISDEILKQV-AEAYRRIRNTL-RF--LLGNLN-DFDPAKDAV 666 (912)
T ss_pred ------------------cChHHHHHHHHhcCCCCCeeecHHHHHHH-HHHHHHHHHHH-HH--HHhCcc-CCCcccccC
Confidence 89999999999977899999998876441 11112222221 11 111111 1000000 0
Q ss_pred CCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHH-HHHhccc
Q 008743 499 GSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLS-EYFTRFY 549 (555)
Q Consensus 499 ~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La-~~fn~fY 549 (555)
+...+ .+.++.++.++..+.+.+.+++++++++.+++.+++++ ..++++|
T Consensus 667 ~~~~l-~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Y 717 (912)
T PRK05743 667 PYEEL-LELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFY 717 (912)
T ss_pred CchhC-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceee
Confidence 00112 45678999999999999999999999999999999998 4776666
No 55
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.78 E-value=5.1e-18 Score=184.19 Aligned_cols=260 Identities=15% Similarity=0.188 Sum_probs=155.4
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCC-CCCCCcccHHHH
Q 008743 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPN-SEDANETAIGEL 206 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~-~~~~~~~~i~~l 206 (555)
++++|+- +-.|+|++||||+|..+.+|+++|.|+..|++|..++..+|+.. +.++ ....|+ .+.+-|.|+..
T Consensus 18 ~~~~~~t-g~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~-lRKv----p~~~p~~~~~ylG~Pl~~- 90 (515)
T TIGR00467 18 NLYTVAS-GITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDP-LRKV----YPFLPEELETYLGMPLTR- 90 (515)
T ss_pred CeEEEec-CCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcc-cccc----cccccHHHHHhCCCccee-
Confidence 3688854 44499999999999999999999999999999999999999865 2221 001110 00011222211
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-ccc-CCcHHH-HH
Q 008743 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NPYIPG-VI 283 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~e-s~~-~~~~~~-v~ 283 (555)
-.||. | +. ..+.+++...|.+.++.|||++++.+- ..| ++...+ +.
T Consensus 91 -----------vpdp~--------------g---~~---~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~~i~ 139 (515)
T TIGR00467 91 -----------IPDPE--------------G---CK---TSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYASQIK 139 (515)
T ss_pred -----------cCCCC--------------C---Cc---HHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHHHHH
Confidence 12332 1 11 345788899999999999999875433 345 333222 22
Q ss_pred HHHHhCCCee--------eecceEEEEec------CCCCCeEE-EecCCcccccch-------hHH----HHHHHhhhcC
Q 008743 284 DELSKQGLVE--------ESQGARVIFIE------GVNIPLII-VKSDGGFNYAST-------DLA----ALWYRLNEEK 337 (555)
Q Consensus 284 ~~L~~~g~~~--------~~dGa~~~~~~------g~~~d~vl-~ksDG~~tY~~~-------DiA----~~~~r~~~~~ 337 (555)
..|++..-+. ++--.-|+.+. |.....++ ...+.+.+|.+. |+- =.-||+ +|.
T Consensus 140 ~~L~~~~~I~~il~~~~~~~~~~~~~P~~pic~~cGrv~~~~~~~~~~~~v~Y~c~cG~~g~~~~~~g~~KL~Wkv-dW~ 218 (515)
T TIGR00467 140 IALDHRKEISEILNEYRTSKLEENWYPISVFCENCGRDTTTVNNYDNEYSIEYSCECGNQESVDIYTGAIKLPWRV-DWP 218 (515)
T ss_pred HHHHhHHHHHHHHHHhcCCccCCCceeeeeecCCcCccCceEEEecCCceEEEEcCCCCEEEEeecCCCcccCCCC-CcH
Confidence 2222222111 11112233221 43322222 112235566542 221 012232 122
Q ss_pred CCeE-----EEEeeCCccc----cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEE-ECCCCccceeccCCccchHHHHH
Q 008743 338 AEWI-----IYVTDVGQQL----HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV-LGEDGKRLRTRFSEVVRLVDLLD 407 (555)
Q Consensus 338 ~d~i-----I~V~g~dq~~----hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v-~~~~G~kmSkR~G~~v~l~dll~ 407 (555)
..|. +=-+|.||.. +-.+...+.+++|..| | .++.|+|| +..+|+|||||+||+++++|+++
T Consensus 219 ~RW~~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~---P-----~~~~ye~v~L~~~g~KMSKS~Gn~itl~dll~ 290 (515)
T TIGR00467 219 ARWKIEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSP---P-----VTVQYEWISLKGKGGKMSSSKGDVISVKDVLE 290 (515)
T ss_pred hhHhhhCcccccCCCCccCccCCchhHHHHHHHHhCCCC---C-----cCcEEEEEEEcCCCccccCCCCCCccHHHHHH
Confidence 1111 2236888865 4555544446897642 1 12345666 43567899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCcccccccc
Q 008743 408 EAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQM 463 (555)
Q Consensus 408 e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~ 463 (555)
. ++++++||++++.++.++++||++.+
T Consensus 291 ~-----------------------------~~pdalR~~~l~~~~~~~ldFd~~~l 317 (515)
T TIGR00467 291 V-----------------------------YTPEITRFLFARTKPEFHISFDLDVI 317 (515)
T ss_pred H-----------------------------cCHHHHHHHHhccCCCCCCcCCHHHH
Confidence 8 68999999999999999999998844
No 56
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.78 E-value=7.5e-17 Score=189.71 Aligned_cols=133 Identities=19% Similarity=0.219 Sum_probs=97.5
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008743 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
++++.+|...-|||||+|||||+++.++.|+++|..+..||+|......+.+|......+..... .. .+....+
T Consensus 58 ~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~--~~----~~~~~~~ 131 (995)
T PTZ00419 58 SGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLM--KE----ENKTRHD 131 (995)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHH--Hh----cCCChHH
Confidence 35678999999999999999999999999999999999999999999999998755433221100 00 0000000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----cccCCcHH
Q 008743 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~e-----s~~~~~~~ 280 (555)
-|.++.++..+++.+.+...+++.+++||+.+||..+ ..|...+.
T Consensus 132 ------------------------------~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~ 181 (995)
T PTZ00419 132 ------------------------------LGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVK 181 (995)
T ss_pred ------------------------------cCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHH
Confidence 0112333444456777888899999999999998543 23445789
Q ss_pred HHHHHHHhCCCeee
Q 008743 281 GVIDELSKQGLVEE 294 (555)
Q Consensus 281 ~v~~~L~~~g~~~~ 294 (555)
+++..|.++|++|+
T Consensus 182 ~~F~~l~~~Gliyr 195 (995)
T PTZ00419 182 EAFVRLYEDGLIYR 195 (995)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999885
No 57
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.76 E-value=1.6e-18 Score=183.51 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=106.5
Q ss_pred CCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECC
Q 008743 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (555)
Q Consensus 308 ~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~ 387 (555)
.|.||.|+||.|||.. |...+.. ..+.+||| .|.||...-+....+.++|||.+ .+.+.|+ .++.++
T Consensus 165 ~D~Vi~R~Dg~PtY~f---A~vVDD~-~mgIThVi--RG~d~l~~tp~Qi~Ly~aLg~~~-----pp~f~Hl--pli~~~ 231 (433)
T PRK12410 165 DSFVILRADKTPTYNF---ACAVDDM-LYDISLII--RGEDHVSNTPKQILIREALGYNK-----EITYAHL--PIILNE 231 (433)
T ss_pred CCeEEEcCCCCccccc---cchhchh-hcCCCEEE--echhhhhCcHHHHHHHHHcCCCC-----CCeEEEe--eeeeCC
Confidence 5789999999999984 5566666 57899995 99999887666668899999942 2479998 568889
Q ss_pred CCccceeccCCccchHHHHHHHHH--HHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCcccccccccc
Q 008743 388 DGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 465 (555)
Q Consensus 388 ~G~kmSkR~G~~v~l~dll~e~~~--~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~ 465 (555)
+|+|||||+| ..++.++.+.++. ...+.+..-|... ++|+... .+.+..|.+.....++..||++++.+
T Consensus 232 ~g~KLSKR~~-~~~v~~~r~~G~~PeAi~n~l~~lG~~~---~~e~~~~-----~eli~~F~~~~i~~~~~~~d~~kL~~ 302 (433)
T PRK12410 232 EGKKMSKRDN-ASSVKWLLEQGFLPSAIANYLILLGNKT---PKEIFTL-----EEAIEWFDIEKISKSPAKFDLKKLRF 302 (433)
T ss_pred CCCeeecccC-hhhHHHHHHCCCCHHHHHHHHHHhCCCC---cccccCH-----HHHHHhCCHhhCCCccccCCHHHHHH
Confidence 9999999999 5589999998874 5566665444221 1222222 24577899999888999999999988
Q ss_pred ccC
Q 008743 466 DKG 468 (555)
Q Consensus 466 ~~~ 468 (555)
+|+
T Consensus 303 ~N~ 305 (433)
T PRK12410 303 INR 305 (433)
T ss_pred HHH
Confidence 875
No 58
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.76 E-value=2.2e-16 Score=184.33 Aligned_cols=167 Identities=14% Similarity=0.164 Sum_probs=113.7
Q ss_pred EEEeeCCccc-cHHHHHHH-HHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHH
Q 008743 342 IYVTDVGQQL-HFDMVFSA-AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419 (555)
Q Consensus 342 I~V~g~dq~~-hf~~~~~~-l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~ 419 (555)
+|+.|.||.. -|...+.. +...|.. |+..-+.| |+|++.+|+|||||+||+|++.+++++
T Consensus 586 ~~~eG~Di~rgWF~s~ll~s~~~~~~~----P~k~V~~H---G~vld~~G~KMSKSlGNvIdP~~ii~~----------- 647 (961)
T PRK13804 586 LYLEGSDQHRGWFNSSLLESCGTRGRA----PYKAVLTH---GFTLDEKGEKMSKSLGNTVSPQDVIKQ----------- 647 (961)
T ss_pred EEEEEcccccHHHHHHHHHHHHhcCCC----ChhhEEEe---ccEECCCCCCccCCCCCcCCHHHHHHh-----------
Confidence 4566776654 34433222 1222432 23344555 889988999999999999999999997
Q ss_pred hcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCChhhhhhcC
Q 008743 420 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTG 499 (555)
Q Consensus 420 ~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~ 499 (555)
+|+|++||++++..+.+|++|+++.+... .+....+.++..++.+.+.+.......+ .
T Consensus 648 ------------------yGaD~lRl~lls~~~~~D~~fs~~~l~~~-~~~~~kL~N~~rf~l~nl~~~~~~~~~~---~ 705 (961)
T PRK13804 648 ------------------SGADILRLWVASVDYSDDQRIGKEILKQV-SETYRKLRNTLRWLLGNLAHFDPGEDVV---A 705 (961)
T ss_pred ------------------cCHHHHHHHHHhCCCCCCcccCHHHHHHH-HHHHHHHHHHHHHHHhccccCCcccccC---C
Confidence 89999999999988899999999976442 2223334444433333333221110000 0
Q ss_pred CCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHH-HHHhccc
Q 008743 500 SLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLS-EYFTRFY 549 (555)
Q Consensus 500 ~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La-~~fn~fY 549 (555)
...+ .+.++.|+.++..+.+.+.+++++|+++.+++.+++++ ..++++|
T Consensus 706 ~~~~-~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Y 755 (961)
T PRK13804 706 YADL-PELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFY 755 (961)
T ss_pred hhhc-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 0111 34578899999999999999999999999999999998 6776665
No 59
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.74 E-value=6.5e-16 Score=180.43 Aligned_cols=174 Identities=14% Similarity=0.150 Sum_probs=113.5
Q ss_pred EEEeeCCccc-cHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHH
Q 008743 342 IYVTDVGQQL-HFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419 (555)
Q Consensus 342 I~V~g~dq~~-hf~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~ 419 (555)
+++.|.||.. ||..+. ..+...|.. ++..-+.| |+|++.+|+|||||.||+|++.++++.....
T Consensus 567 l~~eG~Di~rgWf~s~l~~~~~~~g~~----Pfk~v~~H---G~vld~~G~KMSKSlGNvI~p~~vi~~~~~~------- 632 (974)
T PLN02843 567 LYLEGSDQHRGWFQSSLLTSVATKGKA----PYKSVLTH---GFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQ------- 632 (974)
T ss_pred eeeeeccccchHHHHHHHHHHHhcCCC----ccceEEEe---ccEECCCCCCcCCCCCCcCCHHHHHhhcccc-------
Confidence 5667777754 555443 333445653 34445555 8899889999999999999999999842000
Q ss_pred hcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCChhhh-h-h
Q 008743 420 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEEL-K-K 497 (555)
Q Consensus 420 ~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~-~-~ 497 (555)
++ -.++|+|++||++++....+|+.|+.+.+.+.. -.+.|+.+.+|-.-.+.... + .
T Consensus 633 ~~-------------~~~yGaD~lR~~l~~~~~~~d~~~s~~~l~~~~--------~~~~kl~n~~rf~lgnl~~~~~~~ 691 (974)
T PLN02843 633 KQ-------------EPAYGADVLRLWVASVDYTGDVLIGPQILKQMS--------DIYRKLRGTLRYLLGNLHDWKPDN 691 (974)
T ss_pred cc-------------ccccChHHHHHHHHhcccCCCceeCHHHHHHHH--------HHHHHHHHHHHHHHhCccCCCccc
Confidence 00 002799999999999888899999988664321 12233333333221111000 0 0
Q ss_pred -cCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHH--HHHHhccccc
Q 008743 498 -TGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNL--SEYFTRFYSN 551 (555)
Q Consensus 498 -~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~L--a~~fn~fY~~ 551 (555)
.....+ .+.++.++.++..+.+.+.+++++|+++.+++.++++ ....|.|++.
T Consensus 692 ~~~~~~~-~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~ 747 (974)
T PLN02843 692 AVPYEDL-PSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDV 747 (974)
T ss_pred ccCcccc-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHh
Confidence 000112 3457889999999999999999999999999999987 4455555553
No 60
>PLN02627 glutamyl-tRNA synthetase
Probab=99.74 E-value=5.7e-18 Score=182.30 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=106.1
Q ss_pred CCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECC
Q 008743 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (555)
Q Consensus 308 ~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~ 387 (555)
.|.||.|+||.|||.. |..++.. ..+.+||| .|.||...-++...+.++|||. .+.+.|+ .+|+++
T Consensus 224 ~D~Vi~R~DG~PtY~f---A~vVDD~-~mgITHVi--RG~D~l~nTpkQi~ly~aLg~~------~P~f~Hl--pli~~~ 289 (535)
T PLN02627 224 GDFVLLRSNGQPVYNF---CVAVDDA-TMGITHVI--RAEEHLPNTLRQALIYKALGFP------MPRFAHV--SLILAP 289 (535)
T ss_pred CCeEEEecCCCccccc---cceeccc-ccCCcEEE--echhhhcChHHHHHHHHHcCCC------CCeEEEc--cceeCC
Confidence 5899999999999984 5556665 57899995 9999988776666889999995 3689998 568999
Q ss_pred CCccceeccCCccchHHHHHHHHH--HHHHHHHHhcCCCCCCH---HHHHHHHHhhhhhhHHHhhhccCCCCCccccccc
Q 008743 388 DGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKEWTE---EELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ 462 (555)
Q Consensus 388 ~G~kmSkR~G~~v~l~dll~e~~~--~a~~~~~~~~~~~~~~~---~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~ 462 (555)
+|+|||||.| .+++.++.+.++. ...+.+..- +|++ +|+... .+.+..|++.....++..||.++
T Consensus 290 ~g~KLSKR~~-~~~v~~~r~~G~~PeAi~nyla~L----Gws~~~~~e~~~~-----~eli~~F~l~~v~~s~~~fD~~K 359 (535)
T PLN02627 290 DRSKLSKRHG-ATSVGQFREMGYLPDAMVNYLALL----GWNDGTENEIFTL-----EELVEKFSIDRINKSGAVFDSTK 359 (535)
T ss_pred CCCccccccC-CccHHHHHHCCCCHHHHHHHHHHh----CCCCCCCCCcCCH-----HHHHHhCCHhhCCCcccccCHHH
Confidence 9999999998 5589999988874 455555532 3332 122221 24578899999888999999999
Q ss_pred cccccC
Q 008743 463 MLNDKG 468 (555)
Q Consensus 463 ~~~~~~ 468 (555)
+.++|+
T Consensus 360 L~wlN~ 365 (535)
T PLN02627 360 LKWMNG 365 (535)
T ss_pred HHHHHH
Confidence 998875
No 61
>PLN02381 valyl-tRNA synthetase
Probab=99.74 E-value=1.1e-15 Score=179.55 Aligned_cols=133 Identities=18% Similarity=0.220 Sum_probs=98.1
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008743 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
++++..|...-||+||+|||||+++.++.|+++|..+..||+|......+.+|..+...+.. ..... .+....+
T Consensus 126 ~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek---~l~~~---~~~~~~~ 199 (1066)
T PLN02381 126 SKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEK---KLMRE---RHLTRHD 199 (1066)
T ss_pred CCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHH---HhHhh---cCCChhh
Confidence 34668899999999999999999999999999999999999999999999999877544311 00000 0000000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----cccCCcHH
Q 008743 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~e-----s~~~~~~~ 280 (555)
. |.++.++..+++++.+...+++.+++||+.+||..+ ..|...++
T Consensus 200 --------------------~----------~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~ 249 (1066)
T PLN02381 200 --------------------I----------GREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVT 249 (1066)
T ss_pred --------------------C----------CHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHH
Confidence 0 111233344456777888899999999999998544 24556799
Q ss_pred HHHHHHHhCCCeee
Q 008743 281 GVIDELSKQGLVEE 294 (555)
Q Consensus 281 ~v~~~L~~~g~~~~ 294 (555)
+++..|.++|++|+
T Consensus 250 ~~F~~L~~~GlIyr 263 (1066)
T PLN02381 250 EAFVRLYKEGLIYR 263 (1066)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999985
No 62
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.73 E-value=1.8e-15 Score=176.77 Aligned_cols=139 Identities=20% Similarity=0.272 Sum_probs=100.2
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHH
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (555)
.++..|-..-|||||+||+||+|+.++.|+++|..|..|++|.+....+..|+.+...+..+..+.+. .+
T Consensus 24 ~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~-------~~--- 93 (938)
T TIGR00395 24 REKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDEL-------TI--- 93 (938)
T ss_pred CCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhh-------cc---
Confidence 46789999999999999999999999999999999999999999999999999987665433211000 00
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----cccCCcHHH
Q 008743 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~e-----s~~~~~~~~ 281 (555)
+.|.... .. ...+|.+++ +| +.+++.+...+++.+++||+.+||..+ ..|...++.
T Consensus 94 -~~~~~~~-~i-~~~~i~~~~----------~~------~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~ 154 (938)
T TIGR00395 94 -KNYTEVH-AI-PREELLKFT----------DP------EYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEW 154 (938)
T ss_pred -ccchhhc-cC-CHHHHHhhc----------CH------HHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHH
Confidence 0010000 00 111111111 11 345677788899999999999998643 345667999
Q ss_pred HHHHHHhCCCeee
Q 008743 282 VIDELSKQGLVEE 294 (555)
Q Consensus 282 v~~~L~~~g~~~~ 294 (555)
.+..|.++|++|.
T Consensus 155 ~f~~L~e~G~iy~ 167 (938)
T TIGR00395 155 QMNKLKELGLIVK 167 (938)
T ss_pred HHHHHHHCCCEec
Confidence 9999999999885
No 63
>PLN02882 aminoacyl-tRNA ligase
Probab=99.72 E-value=1.6e-15 Score=179.10 Aligned_cols=132 Identities=20% Similarity=0.202 Sum_probs=98.1
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHH
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (555)
.++.++.-.-||+||++|+||+++.++.|+++|..+..||+|.+....+.+|..+...+.. ..+- ...+.+.+
T Consensus 37 ~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek---~lgi---~~~~~i~~- 109 (1159)
T PLN02882 37 LPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDK---KLGI---KRRDDVLK- 109 (1159)
T ss_pred CCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHH---HcCC---CCccchhh-
Confidence 3458888999999999999999999999999999999999999999999999988755321 1110 00111111
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec-----ccccCCcHHH
Q 008743 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPG 281 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~-----es~~~~~~~~ 281 (555)
. |-.+..+..++++..+...+++.+++||+.+||.. +..|...+..
T Consensus 110 -------------------~----------g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~ 160 (1159)
T PLN02882 110 -------------------M----------GIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWW 160 (1159)
T ss_pred -------------------c----------CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHH
Confidence 0 11122334455677788889999999998887642 2345567999
Q ss_pred HHHHHHhCCCeee
Q 008743 282 VIDELSKQGLVEE 294 (555)
Q Consensus 282 v~~~L~~~g~~~~ 294 (555)
++..|.++|++|+
T Consensus 161 ~f~~l~~kGliyr 173 (1159)
T PLN02882 161 VFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999999885
No 64
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.72 E-value=5.2e-17 Score=159.95 Aligned_cols=216 Identities=19% Similarity=0.152 Sum_probs=147.9
Q ss_pred cCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHHh
Q 008743 135 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSK 214 (555)
Q Consensus 135 ~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~ 214 (555)
-.|+|||+||+||+|++++....||- ..| ...--|.|... +
T Consensus 6 fAPsPtG~LHlG~~~~al~n~l~ar~--~~G---~~ilRieDtd~--------------~-------------------- 46 (239)
T cd00808 6 FAPSPTGFLHIGGARTALFNYLFARK--HGG---KFILRIEDTDQ--------------E-------------------- 46 (239)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--cCC---eEEEEECcCCC--------------C--------------------
Confidence 47999999999999999999988885 333 23333444211 0
Q ss_pred cccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee----------ecccccCCcHHHHHH
Q 008743 215 NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE----------KGESFYNPYIPGVID 284 (555)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~----------~~es~~~~~~~~v~~ 284 (555)
.. ...+.+.+.++++.||+..|. +..|...+...++++
T Consensus 47 ---r~-----------------------------~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS~r~~~y~~~~~ 94 (239)
T cd00808 47 ---RS-----------------------------VPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQSERLEIYRKYAE 94 (239)
T ss_pred ---CC-----------------------------chHHHHHHHHHHHHcCCCCCcCCccCCCCCCEeeeCCHHHHHHHHH
Confidence 00 111224566789999999863 223433345678888
Q ss_pred HHHhCCCeeeecceEEEEecCCCCCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcC
Q 008743 285 ELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAG 364 (555)
Q Consensus 285 ~L~~~g~~~~~dGa~~~~~~g~~~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG 364 (555)
+|.++| ||.|||.. |...+.. ..+++++ |+|.||..|-++...++++||
T Consensus 95 ~L~~~g-------------------------dg~ptY~~---a~~vDD~-~~~ithV--iRG~D~~~~t~~q~~l~~aLg 143 (239)
T cd00808 95 KLLEKG-------------------------DGFPTYHL---ANVVDDH-LMGITHV--IRGEEHLSSTPKQILLYEALG 143 (239)
T ss_pred HHHHcC-------------------------CCCccccc---HHHHhHH-hcCCCEE--EEChhhhhChHHHHHHHHHcC
Confidence 888776 89999996 4444665 5789998 599999999999989999999
Q ss_pred CCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHH--HHHHHHHHhcCCCCCCHHHHHHHHHhhhhhh
Q 008743 365 WLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKEWTEEELEQTAEAVGYGA 442 (555)
Q Consensus 365 ~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~--~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~a 442 (555)
++ .+.+.|+ .++.+.+|+|||||.|+ .++..+.+++.. ...+.+..-|-...-. .+... -.+.
T Consensus 144 ~~------~p~~~h~--pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~-~~~~~-----~~~l 208 (239)
T cd00808 144 WE------PPKFAHL--PLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGWSPPDG-EEFFT-----LEEL 208 (239)
T ss_pred CC------CCceEee--ccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCCCCCCC-CCcCC-----HHHH
Confidence 95 3578888 55778899999999997 589998887664 3333444323211000 01111 1124
Q ss_pred HHHhhhccCCCCCcccccccccccc
Q 008743 443 AKYFDLKNNRLTNYTFSFDQMLNDK 467 (555)
Q Consensus 443 iry~~L~~~~~~~~~Fd~~~~~~~~ 467 (555)
+..|.+.....++..||++++..+|
T Consensus 209 ~~~f~~~~~~~~~~~~d~~kL~~~n 233 (239)
T cd00808 209 IELFDLERVSKSPAIFDPEKLDWLN 233 (239)
T ss_pred HhcCCHhhCCcCcCcCCHHHHHHHH
Confidence 6678887777888999999886654
No 65
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=99.71 E-value=1.8e-17 Score=138.16 Aligned_cols=82 Identities=39% Similarity=0.596 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcC-CCCCCCcccccc-cCCCCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCceeeEE
Q 008743 14 ELEKVFDLALKATV-PNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSV 91 (555)
Q Consensus 14 ~~~~~~~~a~~~~~-~~~~~~~~~~~~-~~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~v 91 (555)
++++.|+++|.+.. .......+.++. +++++|||+||+||.+||.++ ++|.+||++|++.|..++.|++|+|
T Consensus 2 ~l~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~GD~~~n~a~~lak~~k------~~P~~iA~~i~~~l~~~~~i~~vev 75 (85)
T PF03485_consen 2 QLKKAISEALKKAFGIDLEEIEIQIEKPPNPKFGDYQTNIAFRLAKKLK------KNPREIAEEIAEKLEKSPIIEKVEV 75 (85)
T ss_dssp HHHHHHHHHHHHCHSTTCCCHGGGEEE-SSGGG-SEEEEHHHHHHHHTT------S-HHHHHHHHHHCHCTTTTEEEEEE
T ss_pred hHHHHHHHHHHHHhcccccccceEEEcCCCCCceeeeccchHHHHHHcC------CCHHHHHHHHHHhcCCCCCEEEEEE
Confidence 45555666665552 111223455664 578999999999999999999 9999999999999998888999999
Q ss_pred ecCCeEEEEe
Q 008743 92 AGPGFVNVVL 101 (555)
Q Consensus 92 ~gpGfiN~~l 101 (555)
+|||||||+|
T Consensus 76 ~gpGFiN~~L 85 (85)
T PF03485_consen 76 AGPGFINFFL 85 (85)
T ss_dssp ETTTEEEEEE
T ss_pred cCCcEEEEeC
Confidence 9999999997
No 66
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.71 E-value=1.9e-15 Score=174.34 Aligned_cols=166 Identities=13% Similarity=0.219 Sum_probs=110.8
Q ss_pred EEEeeCCcc-cc--HHHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEEC----CCCc-----------------------
Q 008743 342 IYVTDVGQQ-LH--FDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLG----EDGK----------------------- 390 (555)
Q Consensus 342 I~V~g~dq~-~h--f~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~----~~G~----------------------- 390 (555)
+|+.|.||. .| +.+.+ .++...|..+...|+..-+.| |||++ ++|+
T Consensus 523 ~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~---G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 599 (842)
T TIGR00396 523 LYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQ---GMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVV 599 (842)
T ss_pred EeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhcc---ceEEeeeecCCCCccChhhhccccccccccCCcccc
Confidence 556677762 33 22333 344555654332234333444 89998 7888
Q ss_pred ----cceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhcc-CCCCCcccccccccc
Q 008743 391 ----RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLN 465 (555)
Q Consensus 391 ----kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~-~~~~~~~Fd~~~~~~ 465 (555)
|||||+||+|++.|++++ +|+|++|+++++. .+..+++|+.+.+..
T Consensus 600 ~~~~KMSKS~GN~v~p~~ii~~-----------------------------ygaDalRl~~l~~~~~~~d~~~~~~~l~~ 650 (842)
T TIGR00396 600 VGYEKMSKSKGNGIDPQEIVKK-----------------------------HGADALRLYIMFMGPIAASLEWNDSGLEG 650 (842)
T ss_pred cchhhhhhcCCCcCCHHHHHHH-----------------------------cCchHHHHHHHhcCCcCCCCccCHHHHHH
Confidence 999999999999999998 7999999999965 578888888877632
Q ss_pred ccCChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcc-hHHHHHHHHHHHHH
Q 008743 466 DKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLL-PNVVCEYLYNLSEY 544 (555)
Q Consensus 466 ~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~-p~~l~~yl~~La~~ 544 (555)
.. -.+.|+.++++............+...+ .+.++.|+.++.++...+.++++++. .+.++..++++...
T Consensus 651 ~~--------~~l~kl~~~~~~~~~~~~~~~~~~~~~l-~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~ 721 (842)
T TIGR00396 651 AR--------RFLDRVWNLFYNILGELDGKTYLTPTIL-EEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNA 721 (842)
T ss_pred HH--------HHHHHHHHHHHHHHhhhcccccCCcccC-CHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 21 1223444444332110000000000112 45678899999999999999999988 99999999999887
Q ss_pred Hhcc
Q 008743 545 FTRF 548 (555)
Q Consensus 545 fn~f 548 (555)
++++
T Consensus 722 L~~~ 725 (842)
T TIGR00396 722 LYKA 725 (842)
T ss_pred HHhh
Confidence 7764
No 67
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.69 E-value=6.6e-15 Score=169.45 Aligned_cols=157 Identities=16% Similarity=0.241 Sum_probs=108.3
Q ss_pred EEEeeCCcc-ccH--HHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHH
Q 008743 342 IYVTDVGQQ-LHF--DMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVL 417 (555)
Q Consensus 342 I~V~g~dq~-~hf--~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~ 417 (555)
+|+.|.||. .|+ .+.+ .++..+|+.+...|+ ..+.|. |+| |||||+||+|++.|++++
T Consensus 526 ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pf-k~v~~~--G~v------KMSKS~GN~i~p~~~i~~--------- 587 (805)
T PRK00390 526 QYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPF-KKLLTQ--GMV------KMSKSKGNVVDPDDIIEK--------- 587 (805)
T ss_pred EEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcch-hhheec--CcE------EeCCCCCCCCCHHHHHHH---------
Confidence 556677663 332 2333 344555643322233 345554 777 899999999999999998
Q ss_pred HHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhcc-CCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCChhhhh
Q 008743 418 IERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELK 496 (555)
Q Consensus 418 ~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~-~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~ 496 (555)
+|+|++|+++++. .+.++++|+.+.+... +-.+.|+.+.++........
T Consensus 588 --------------------ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~--------~~~l~kl~~~~~~~~~~~~~-- 637 (805)
T PRK00390 588 --------------------YGADTARLFEMFAGPPEKDLEWSDSGVEGA--------YRFLQRVWRLVVDAKGEAGA-- 637 (805)
T ss_pred --------------------cChHHHHHHHHhcCCccCCcccCHHHHHHH--------HHHHHHHHHHHHHhhhcccc--
Confidence 8999999999985 6789999998876431 12234555555431111100
Q ss_pred hcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccc
Q 008743 497 KTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFY 549 (555)
Q Consensus 497 ~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY 549 (555)
.+ ..+ .+.++.|+.++.++...+.+++++++.+.++..++++...+++||
T Consensus 638 -~~-~~~-~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n~lsk~~ 687 (805)
T PRK00390 638 -LD-VAA-LSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKAE 687 (805)
T ss_pred -cC-ccc-ChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 01 111 245688999999999999999999999999999999999999987
No 68
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.68 E-value=4.6e-16 Score=160.37 Aligned_cols=240 Identities=20% Similarity=0.215 Sum_probs=154.1
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHH
Q 008743 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 213 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 213 (555)
=-.|+|||+|||||+|++++-...|| +.-|-=+.| |.|...
T Consensus 5 RFAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLR---ieDtD~---------------------------------- 45 (314)
T PF00749_consen 5 RFAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILR---IEDTDP---------------------------------- 45 (314)
T ss_dssp EE---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEE---EETSST----------------------------------
T ss_pred eeCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEe---cccccc----------------------------------
Confidence 34799999999999999999998888 444554444 223111
Q ss_pred hcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--eecccccCCcHHHHHHHHHhCCC
Q 008743 214 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE--EKGESFYNPYIPGVIDELSKQGL 291 (555)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~--~~~es~~~~~~~~v~~~L~~~g~ 291 (555)
. +.+..+.+.+.++|+.||+..| .+..|.+.+...++++.|.++|.
T Consensus 46 --------~------------------------R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~Y~~~~~~L~~~g~ 93 (314)
T PF00749_consen 46 --------E------------------------RCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEIYQEAAEKLIDKGK 93 (314)
T ss_dssp --------T------------------------TCHHHHHHHHHHHHHHHT---STCEEEGGGGHHHHHHHHHHHHHTTS
T ss_pred --------c------------------------cchhhHHHHHHhheeEEEEecCCeEEeHHHHHHHHHHHHHHHhhcCC
Confidence 0 0012233456668888888875 22345444556777788888887
Q ss_pred eee-------------------------------------------ecceEEEEec--------------C-------CC
Q 008743 292 VEE-------------------------------------------SQGARVIFIE--------------G-------VN 307 (555)
Q Consensus 292 ~~~-------------------------------------------~dGa~~~~~~--------------g-------~~ 307 (555)
+|. .++..++++. | ..
T Consensus 94 aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~v~g~i~~~~~~~ 173 (314)
T PF00749_consen 94 AYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDLVRGRIIFDPSDL 173 (314)
T ss_dssp EEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEETTTEEEEEEGGGS
T ss_pred CccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccccccccCcceeeeeccccC
Confidence 774 0112233332 0 12
Q ss_pred CCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECC
Q 008743 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (555)
Q Consensus 308 ~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~ 387 (555)
.|+|+.|+||.|||. +|..++.. ..+.+||| .|.||...-.+...+.++||+. .+.+.|++ ++++.
T Consensus 174 ~D~vi~r~dg~ptY~---fA~vVDD~-~~gITHVi--RG~D~l~~t~~Q~~L~~~Lg~~------~P~~~H~p--l~l~~ 239 (314)
T PF00749_consen 174 GDFVIRRSDGYPTYH---FAVVVDDH-LMGITHVI--RGEDLLSSTPRQILLYEALGWP------PPPYAHLP--LILNE 239 (314)
T ss_dssp BTEEEESTTSEB-HH---HHHHHHHH-HTT-SEEE--EEGGGTTCHHHHHHHHHHCTSS------S-EEEEEE--EEEET
T ss_pred CchhccccccCcccc---cceeeccc-ccccCeEE--EccccccccHHHHHHHHHhCCC------CcceEeee--eeecC
Confidence 589999999999998 57777877 57899995 9999988766666889999995 36789984 57779
Q ss_pred CCccceeccCCcc-chHHHHHHHHH--HHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccc
Q 008743 388 DGKRLRTRFSEVV-RLVDLLDEAKN--RSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQML 464 (555)
Q Consensus 388 ~G~kmSkR~G~~v-~l~dll~e~~~--~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~ 464 (555)
+|+|+|||+|... .+.++.+.+.. ...+.+..+| |+++...++.. -.+.++.|+++....+...||.+++.
T Consensus 240 ~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG----~~~~~~~e~~~--~~~~~~~f~~~~~~~~~~~fd~~kL~ 313 (314)
T PF00749_consen 240 DGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARLG----WSPEAIREFFS--LDELIKQFDLSKISKSPAVFDRKKLD 313 (314)
T ss_dssp TSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTT----B-HCTHHCHHH--HHHHHHHC-GGGBHSSHEEHHHHHHH
T ss_pred CCcEechhhccccccccccccCCCCHHHHHHHHHHhc----CCcchhhhhcC--HHHHHHHhhHhhccCchHHhCHHHhC
Confidence 9999999999553 37788777764 4566676554 55443333332 24567888898888899999988753
No 69
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=99.68 E-value=3.4e-14 Score=167.65 Aligned_cols=132 Identities=22% Similarity=0.161 Sum_probs=97.2
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHH
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (555)
+++.++.-.-||+||.+||||+++.++.|+++|..+..||+|.+....+.+|..+...+.. ..+-. ....+.+
T Consensus 101 ~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk---~lg~~---~k~~i~~- 173 (1205)
T PTZ00427 101 KKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEK---ENNIN---KKEDILK- 173 (1205)
T ss_pred CCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHH---HhCCC---cccchhh-
Confidence 4568888899999999999999999999999999999999999999999999988755421 11100 0011110
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec-----ccccCCcHHH
Q 008743 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPG 281 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~-----es~~~~~~~~ 281 (555)
. |-++..+..++++..+...+++.+++||+..||.. +..|...+..
T Consensus 174 -------------------~----------g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~ 224 (1205)
T PTZ00427 174 -------------------M----------GIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWW 224 (1205)
T ss_pred -------------------c----------CHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHH
Confidence 0 11122334455677777888999999998877643 2345567899
Q ss_pred HHHHHHhCCCeee
Q 008743 282 VIDELSKQGLVEE 294 (555)
Q Consensus 282 v~~~L~~~g~~~~ 294 (555)
++..|.++|++|+
T Consensus 225 ~f~~L~ekGlIYr 237 (1205)
T PTZ00427 225 VFSELYKNNYVYK 237 (1205)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999998885
No 70
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.68 E-value=2.6e-16 Score=153.81 Aligned_cols=169 Identities=18% Similarity=0.108 Sum_probs=122.3
Q ss_pred HHHHHHHHHHcCCeeee--ecccccCCcHHHHHHHHHhCCCeeeecceEEEEecCCCCCeEEEecCCcccccchhHHHHH
Q 008743 253 RKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALW 330 (555)
Q Consensus 253 ~~~~~~~~~~Lgi~f~~--~~es~~~~~~~~v~~~L~~~g~~~~~dGa~~~~~~g~~~d~vl~ksDG~~tY~~~DiA~~~ 330 (555)
.+.+.++++.||+..|. +..|.+.+...+++++|.++| |.|+|. +|..+
T Consensus 53 ~~~I~~dL~wlGl~wd~~~~~QS~r~~~y~~~~~~L~~~g--------------------------g~p~Y~---la~vv 103 (230)
T cd00418 53 VESILEDLKWLGLDWDEGPYRQSDRFDLYRAYAEELIKKG--------------------------GYPLYN---FVHPV 103 (230)
T ss_pred HHHHHHHHHHcCCCCCCCeeehhcCHHHHHHHHHHHHHcC--------------------------CCcccc---ccccc
Confidence 35677799999999862 334555556788999999988 889997 46666
Q ss_pred HHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHH
Q 008743 331 YRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 410 (555)
Q Consensus 331 ~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~ 410 (555)
+.. ..+.+++| .|.||...-++...++++||++ .+.+.|+ .++.+.+|+|||||+|+ .++.++.+++.
T Consensus 104 DD~-~~gIThVi--RG~D~l~st~~q~~l~~~Lg~~------~P~~~H~--pll~~~~g~KLSKr~~~-~~i~~~r~~G~ 171 (230)
T cd00418 104 DDA-LMGITHVL--RGEDHLDNTPIQDWLYEALGWE------PPRFYHF--PRLLLEDGTKLSKRKLN-TTLRALRRRGY 171 (230)
T ss_pred ccc-ccCCCEEE--ECHhhhhchHHHHHHHHHcCCC------CCeEEEe--eeeeCCCCCCccCcCCC-cCHHHHHHCCC
Confidence 666 57899995 9999988877777889999994 4678898 56888999999999996 58999888665
Q ss_pred H--HHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccC
Q 008743 411 N--RSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 468 (555)
Q Consensus 411 ~--~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~ 468 (555)
. ...+.+..-|-... ++.++.++. +++..|.+.....++..||++++..+|.
T Consensus 172 ~p~ai~~~l~~lG~~~~-~~~~~~~~~-----~li~~f~~~~~~~~~~~~d~~kL~~~N~ 225 (230)
T cd00418 172 LPEALRNYLALIGWSKP-DGHELFTLE-----EMIAAFSVERVNSADATFDWAKLEWLNR 225 (230)
T ss_pred cHHHHHHHHHHcCCCCC-CCccccCHH-----HHHHhcCHhhCCCCCcccCHHHHHHHHH
Confidence 3 33444443232111 111222222 2677888888888999999998876653
No 71
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.67 E-value=5.6e-17 Score=166.66 Aligned_cols=258 Identities=16% Similarity=0.208 Sum_probs=130.0
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCC--CCCCcccHH
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS--EDANETAIG 204 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~--~~~~~~~i~ 204 (555)
.+.++| -|+-.|+|+.|||++|..+.+++++|.|+..|++|..++..+|... +..+ ....|+. ..+-+.|+.
T Consensus 22 ~~~~v~-~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~-lRKv----P~~~p~~~~~~ylg~Plt 95 (360)
T PF01921_consen 22 KEPYVF-ASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDP-LRKV----PPNVPNPELEKYLGKPLT 95 (360)
T ss_dssp -SEEEE-EEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB----------TTS-CC-CCCCTTSBTT
T ss_pred CccEEE-ecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCc-ccCC----CCCCChHHHHHhcCCccc
Confidence 456666 7999999999999999999999999999999999999999999876 3322 2233433 223334443
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec-ccccC-CcHH-H
Q 008743 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-ESFYN-PYIP-G 281 (555)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~-es~~~-~~~~-~ 281 (555)
.+ .||. | +.+ .+.+++...|.+.|+.|||++++.+ -..|. +... .
T Consensus 96 ~V------------PdP~--------------G---~~~---SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~ 143 (360)
T PF01921_consen 96 RV------------PDPF--------------G---CHE---SYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQ 143 (360)
T ss_dssp TS------------B-TT--------------S---SSS---CHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHH
T ss_pred cC------------CCCC--------------C---CCc---cHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHH
Confidence 21 2332 1 112 2468888999999999999986433 24553 3322 1
Q ss_pred HHHHHHhCCCee----------eecceEEEEe----c--CCCCCeEEEec---CCcccccchhHHHH------------H
Q 008743 282 VIDELSKQGLVE----------ESQGARVIFI----E--GVNIPLIIVKS---DGGFNYASTDLAAL------------W 330 (555)
Q Consensus 282 v~~~L~~~g~~~----------~~dGa~~~~~----~--g~~~d~vl~ks---DG~~tY~~~DiA~~------------~ 330 (555)
+...|+++.-+. ..++ |+.. + |.-....++.- .++.+|.++.+++. -
T Consensus 144 i~~aL~~~~~I~~Il~~~~~~~~~~~--y~Pf~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~gKL~ 221 (360)
T PF01921_consen 144 IRTALENRDEIREILNEYRGRERPET--YSPFLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGNGKLQ 221 (360)
T ss_dssp HCHHHHTHHHHHHHHHHHHHHT--TT----SEEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT-EEE-
T ss_pred HHHHHHhHHHHHHHHHHhcCcCCCCC--eeeeeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCccccc
Confidence 222222221111 1122 2211 1 33111222222 35667776322211 1
Q ss_pred HHh------hhcCCCeEEEEeeCCccc---cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCcc
Q 008743 331 YRL------NEEKAEWIIYVTDVGQQL---HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (555)
Q Consensus 331 ~r~------~~~~~d~iI~V~g~dq~~---hf~~~~~~l-~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v 400 (555)
||+ ...+.|.= --|.||.. -+..-..++ +.+|+.| + .|+.|++++...|.|||||+||++
T Consensus 222 WkvDW~mRW~~lgVdfE--p~GKDH~~~GGS~d~~~~I~~~i~g~~p------P--~~~~YE~~~~~g~~kmSsSkG~~~ 291 (360)
T PF01921_consen 222 WKVDWPMRWAALGVDFE--PFGKDHASPGGSYDTSKRIAREILGYEP------P--VPFPYEFFLDKGGGKMSSSKGNGI 291 (360)
T ss_dssp HHHHHHHHHHHTT-SEE--EEEHHHHCTTSHHHHHHHHHHHCC-------------EEEEE--EEES-------------
T ss_pred CCCcChhhhhhcCceec--cCCCccCCCCCChhhHHHHHHHHhCCCC------C--CCCCeeEEEeCCCcccccCCCCcc
Confidence 232 12355532 36888876 777777888 7889853 2 688999999887779999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCcccccc-cc
Q 008743 401 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFD-QM 463 (555)
Q Consensus 401 ~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~-~~ 463 (555)
+++|+|+- ..++.+||++++..|.+..+|+++ .+
T Consensus 292 t~~e~L~~-----------------------------~~PE~lr~l~~~~~P~~~~~~~~~~~i 326 (360)
T PF01921_consen 292 TPEEWLEY-----------------------------APPESLRYLMARTKPNKAKDFSFDLVI 326 (360)
T ss_dssp -HHHHHTT-----------------------------S-HHHHHHHHHCS-TTS-EEE--STTH
T ss_pred CHHHHHHh-----------------------------cCHHHHHHHHcccCCCcceEeccCcch
Confidence 99999986 468899999999999999999988 44
No 72
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=3.6e-16 Score=167.41 Aligned_cols=138 Identities=20% Similarity=0.196 Sum_probs=106.0
Q ss_pred EEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCc
Q 008743 311 IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 390 (555)
Q Consensus 311 vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~ 390 (555)
|+.|+||.|||.. |..++.. ..+.+|+| .|.||...-++...+.+++|++ .+.+.|+ ++|++.+|+
T Consensus 184 v~~r~dg~ptY~f---avvvDD~-~mgITHvi--RG~d~~~nt~~q~~l~~~lg~~------~P~~~H~--~li~~~~g~ 249 (472)
T COG0008 184 VILRYDGYPTYNF---AVVVDDH-LMGITHVL--RGEDHLDNTPRQIWLYEALGWP------PPVYAHL--PLLLNEDGK 249 (472)
T ss_pred eeecCCCCcccce---eeeechh-hcCCceEE--echhhccCCHHHHHHHHHcCCC------CCcEEEe--eeeecCCCC
Confidence 9999999999984 4445555 47899996 9999998888887899999995 3788997 778889999
Q ss_pred cceeccCCccchHHHHHHHHH--HHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccC
Q 008743 391 RLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 468 (555)
Q Consensus 391 kmSkR~G~~v~l~dll~e~~~--~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~ 468 (555)
|||||+| .+++.++.+.+.. +..+.+.-+|. +++++..+..+.. ..+.+|+++....+...||++++...|+
T Consensus 250 kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~--~~~~~~~e~f~~~---~~~~~fd~~~~~~~~~~fd~~kL~~~n~ 323 (472)
T COG0008 250 KLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGR--GYPPEAIEIFSLE---EGIKWFDLTIVSKSPAAFDRKKLDWLNP 323 (472)
T ss_pred eecCccC-ccccchhhhcCCCcHHHHHHHHHhcC--CCChhhHHHHHHH---HHHhhhhhhhhhcccccccHHHhHhhhH
Confidence 9999999 8888888877764 44454443331 2344555554433 3578899999999999999999877764
No 73
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.64 E-value=9.4e-16 Score=167.07 Aligned_cols=230 Identities=16% Similarity=0.078 Sum_probs=153.2
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHH
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (555)
+.+|+. .+.|+|||+|||||+|++++-+.+|| +|.....--++|....+.
T Consensus 99 ~g~V~t-RFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~~------------------------ 148 (567)
T PRK04156 99 KGKVVM-RFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRTK------------------------ 148 (567)
T ss_pred CCeEEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCcc------------------------
Confidence 445666 68999999999999999999999999 455555555555322100
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eecccccCCcHHHHHHH
Q 008743 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDE 285 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~es~~~~~~~~v~~~ 285 (555)
+ . ...+.+.+.++++.||+..| ....|.+.+...++++.
T Consensus 149 ---------R--~-----------------------------~~e~~~~I~edL~wLGl~wD~~~~qSdr~~~y~~~a~~ 188 (567)
T PRK04156 149 ---------R--P-----------------------------DPEAYDMILEDLKWLGVKWDEVVIQSDRLEIYYEYARK 188 (567)
T ss_pred ---------c--c-----------------------------hHHHHHHHHHHHHHcCCCCCCccCcccCHHHHHHHHHH
Confidence 0 0 01122456678888888765 22345555566778888
Q ss_pred HHhCCCeeee----------------------------------------cceEEEEecCC-------CCCeEEEecCCc
Q 008743 286 LSKQGLVEES----------------------------------------QGARVIFIEGV-------NIPLIIVKSDGG 318 (555)
Q Consensus 286 L~~~g~~~~~----------------------------------------dGa~~~~~~g~-------~~d~vl~ksDG~ 318 (555)
|.++|++|.. +|..++++..+ -.|.|+.|.+.+
T Consensus 189 Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~ 268 (567)
T PRK04156 189 LIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKT 268 (567)
T ss_pred HHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCccccEEEEEcCC
Confidence 8888887741 11233444321 146677776432
Q ss_pred ---------ccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCC
Q 008743 319 ---------FNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG 389 (555)
Q Consensus 319 ---------~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G 389 (555)
..|.|=|+|..++.. ..|.+|+| .|.||..+-++...++++||+. .+.+.|+ ++++ .+|
T Consensus 269 ~h~~~Gd~~~i~PtY~fA~~VDD~-l~GITHVi--Rg~d~~~~t~~Q~~l~~~Lg~~------~P~~~H~--~~L~-~~g 336 (567)
T PRK04156 269 PHPRVGDKYRVWPTYNFAVAVDDH-LLGVTHVL--RGKDHIDNTEKQRYIYDYFGWE------YPETIHY--GRLK-IEG 336 (567)
T ss_pred CccccCCCeEEEEEeccCceeeec-CCCCCeEE--cccccccChHHHHHHHHHcCCC------CceEEEc--ceec-CCC
Confidence 123333667666655 47899985 9999988877777888999994 3678897 5676 578
Q ss_pred ccceeccCC---------------ccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCC-C
Q 008743 390 KRLRTRFSE---------------VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-L 453 (555)
Q Consensus 390 ~kmSkR~G~---------------~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~ 453 (555)
.|||||++. ..++..|.+.+ +.++|+|.|++.... .
T Consensus 337 ~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG----------------------------~~PeAi~~fl~~lG~s~ 388 (567)
T PRK04156 337 FVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRG----------------------------ILPEAIRELIIEVGVKE 388 (567)
T ss_pred ceeecccchhccccCccccccCCchHHHHHHHHcC----------------------------CCHHHHHHHHHHhCCCC
Confidence 899999832 23455554442 568899999997764 4
Q ss_pred CCccccccccccc
Q 008743 454 TNYTFSFDQMLND 466 (555)
Q Consensus 454 ~~~~Fd~~~~~~~ 466 (555)
++..|+|+.+.+.
T Consensus 389 ~~~~~~~~~L~~~ 401 (567)
T PRK04156 389 TDATISWENLYAI 401 (567)
T ss_pred CCcccCHHHHHHH
Confidence 8999999987544
No 74
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.64 E-value=8.9e-16 Score=150.69 Aligned_cols=167 Identities=16% Similarity=0.048 Sum_probs=119.1
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHH
Q 008743 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 213 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 213 (555)
=+.|+|||+||+||+|++++.+.+|| ++++...--+.|..... +
T Consensus 5 RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r---------------------~---------- 48 (240)
T cd09287 5 RFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRT---------------------K---------- 48 (240)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCc---------------------c----------
Confidence 57899999999999999999999999 67777766666642200 0
Q ss_pred hcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-ecccccCCcHHHHHHHHHhCCCe
Q 008743 214 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDELSKQGLV 292 (555)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~-~~es~~~~~~~~v~~~L~~~g~~ 292 (555)
. ....+.+.+.++++.||+..|. ...|.+.+...++++.|.++|.+
T Consensus 49 ----~-----------------------------~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~~y~~~~~~Li~~G~a 95 (240)
T cd09287 49 ----R-----------------------------PDPEAYDMIPEDLEWLGVKWDEVVIASDRIELYYEYARKLIEMGGA 95 (240)
T ss_pred ----c-----------------------------chHHHHHHHHHHHHHcCCCCCCccchhccHHHHHHHHHHHHHcCCc
Confidence 0 0122234477899999997752 22355555678889999999999
Q ss_pred eeecceEEEEecCCCCCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCC
Q 008743 293 EESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST 372 (555)
Q Consensus 293 ~~~dGa~~~~~~g~~~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~ 372 (555)
|... -.| .+.++ .|+|. +|..++.. ..+.+++| .|.|+...-++...+.++||+.
T Consensus 96 Y~~~------~~~--~~~~i-----~ptY~---la~vVDD~-~~gIThVi--Rg~d~~~~t~~q~~l~~~Lg~~------ 150 (240)
T cd09287 96 YVHP------RTG--SKYRV-----WPTLN---FAVAVDDH-LLGVTHVL--RGKDHIDNTEKQRYIYEYFGWE------ 150 (240)
T ss_pred ccCc------ccC--CcEEE-----EEccc---cceeeecc-ccCCCeEE--echhhhhCCHHHHHHHHHcCCC------
Confidence 9610 011 23443 27886 45556665 57889985 9999988777777888999994
Q ss_pred CCcEEEEEeeEEECCCCccceeccC
Q 008743 373 YPKASHVGFGLVLGEDGKRLRTRFS 397 (555)
Q Consensus 373 ~~~~~Hv~~g~v~~~~G~kmSkR~G 397 (555)
.+.+.|++ ++.+ +|+|||||++
T Consensus 151 ~P~~~H~p--ll~~-~~~kLSKR~~ 172 (240)
T cd09287 151 YPETIHWG--RLKI-EGGKLSTSKI 172 (240)
T ss_pred CCcEEeee--eecC-CCCeeccccc
Confidence 36788984 5765 5799999995
No 75
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.8e-15 Score=158.04 Aligned_cols=260 Identities=18% Similarity=0.287 Sum_probs=164.4
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCC---CCCcccHH
Q 008743 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSE---DANETAIG 204 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~---~~~~~~i~ 204 (555)
+.++| -|+..|.|..|||++|-.+.||+++|.|+..|++|..++..+|+.. +..+ ....|+.+ .|-+.|+.
T Consensus 19 ~~~~v-~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~-lRkv----p~~lp~~~~~e~Ylg~Plt 92 (521)
T COG1384 19 DEYVV-ATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDP-LRKV----PRNLPDPEELEQYLGMPLT 92 (521)
T ss_pred CcEEE-ecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcc-cccC----CCCCCChHHHHHHcCCccc
Confidence 56777 6899999999999999999999999999999999999999999876 2211 01111100 01112221
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-cccC-CcHHHH
Q 008743 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFYN-PYIPGV 282 (555)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~e-s~~~-~~~~~v 282 (555)
.+ .||. | +.+ ...++++..|.+.+++|||..++.+. ..|. +...++
T Consensus 93 ~I------------PdP~--------------G---~~~---Sya~hf~~~f~~~l~~~Gi~~E~~s~se~Yk~G~~~~~ 140 (521)
T COG1384 93 EI------------PDPF--------------G---CCD---SYAEHFLRPFEEFLDEFGIEVEFVSATELYKSGLYDEA 140 (521)
T ss_pred cC------------CCCc--------------c---ccc---hHHHHHHHHHHHHHHhcCCceEEEEhHHhhhcccHHHH
Confidence 11 2332 1 122 24788889999999999999865433 3453 332222
Q ss_pred H-----------HHHHh-CCCeeeecceEEEEe---c--CC-CCCeEE-EecCCcccccchh-------HH----HHHHH
Q 008743 283 I-----------DELSK-QGLVEESQGARVIFI---E--GV-NIPLII-VKSDGGFNYASTD-------LA----ALWYR 332 (555)
Q Consensus 283 ~-----------~~L~~-~g~~~~~dGa~~~~~---~--g~-~~d~vl-~ksDG~~tY~~~D-------iA----~~~~r 332 (555)
+ +.|.+ .|- +-.+.+|-.. + |. ....|+ ...+|+.+|.|.+ |- -.-||
T Consensus 141 i~~ale~rdeI~~il~~~~~~--~~~e~~~P~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir~g~~KL~WR 218 (521)
T COG1384 141 IRIALERRDEIMEILNEYRGR--ELEEDWSPFMPICEKCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIRGGEGKLPWR 218 (521)
T ss_pred HHHHHhhHHHHHHHHHHhcCC--cccCCceeccccccccCCcceeEEEEecCCceEEEEecCCccceeeccccCcccccC
Confidence 2 22211 111 1122222211 1 44 222222 2344677888753 31 01244
Q ss_pred hhhcCCCeEEEE-----eeCCcc---ccHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchH
Q 008743 333 LNEEKAEWIIYV-----TDVGQQ---LHFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (555)
Q Consensus 333 ~~~~~~d~iI~V-----~g~dq~---~hf~~~~~~l~-~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~ 403 (555)
+ +|+.-|..-= -|.||. +-+.....|++ .+|+.| | .++.|++|.+..|.|||||+|++|+++
T Consensus 219 v-dWp~RW~~lgVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~p---P-----~~~~YE~i~lkg~~~mSsSkG~~i~~~ 289 (521)
T COG1384 219 V-DWPMRWAALGVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEP---P-----VPFVYEWILLKGGGKMSSSKGNVISLS 289 (521)
T ss_pred c-CccchhhccCcccccCCcccccccCchHHHHHHHHHhcCCCC---C-----CCCceEEEEecCCcccccCCCcEEcHH
Confidence 4 3444443211 356664 34667778886 889853 2 456789998877789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccc-ccc
Q 008743 404 DLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ-MLN 465 (555)
Q Consensus 404 dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~-~~~ 465 (555)
|+++- ..++.+||++++..|.+..+||++. +.+
T Consensus 290 dwlev-----------------------------~~pE~lry~~~r~kP~r~~~~d~~~~il~ 323 (521)
T COG1384 290 DWLEV-----------------------------APPEVLRYLIARTKPNRHIDFDFDLGILK 323 (521)
T ss_pred HHHHh-----------------------------cCHhHeeeeeeecCCCcceecCCCCChhH
Confidence 99997 4788999999999999999998887 444
No 76
>PLN02563 aminoacyl-tRNA ligase
Probab=99.63 E-value=4.7e-14 Score=163.60 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=81.5
Q ss_pred cceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCC-CCCccccccccccccCC
Q 008743 391 RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLNDKGN 469 (555)
Q Consensus 391 kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~~~~~Fd~~~~~~~~~n 469 (555)
|||||+||+|++.+++++ +|+|++|+|.+...+ ..+..|+.+.+ ++
T Consensus 723 KMSKSKGNvVdP~eiI~k-----------------------------YGADaLRl~ll~~ap~~dd~~w~~~~V---~g- 769 (963)
T PLN02563 723 KMSKSRGNVVNPDDVVSE-----------------------------YGADSLRLYEMFMGPLRDSKTWSTSGV---EG- 769 (963)
T ss_pred ccccccCCcCCHHHHHHH-----------------------------cCcHHHHHHHHhCCCcccccccCHHHH---HH-
Confidence 999999999999999998 899999999998765 55666664443 11
Q ss_pred hhHHHHHHHHHHHHHHHhhC-CChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc
Q 008743 470 TAVYLLYAHARICSIIRKSG-KDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRF 548 (555)
Q Consensus 470 ~~~ylqYa~aR~~silrk~~-~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~f 548 (555)
...++. |+..+..... .+. .... .........+.+++..+..+...+.+++++|+++.++..+++++...+++
T Consensus 770 ~~rfL~----rlwn~~~~~~~~~~-~~~~-~~~~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~~ 843 (963)
T PLN02563 770 VHRFLG----RTWRLVVGAPLPDG-SFRD-GTVVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYKW 843 (963)
T ss_pred HHHHHH----HHHHHHHHhhhccc-ccCc-cccccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCc
Confidence 123443 4433333220 000 0000 00000113456788999999999999999999999999999999877664
No 77
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.63 E-value=4e-15 Score=166.61 Aligned_cols=133 Identities=21% Similarity=0.288 Sum_probs=92.9
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008743 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
++++..|-..-||+||+||+||++|.++.|+++|..+..||+|......+-.|..+...+.. .++... +..
T Consensus 21 ~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek---~l~~~~---~~~--- 91 (601)
T PF00133_consen 21 NKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEK---KLGIKE---KKD--- 91 (601)
T ss_dssp TSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHH---HTTTTS---HHH---
T ss_pred CCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHH---hhcccc---ccc---
Confidence 35778888999999999999999999999999999999999999999999999988765422 121100 000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----cccCCcHH
Q 008743 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~e-----s~~~~~~~ 280 (555)
...+ |.++.++..+++++...+.+++.+++||+.+||..+ ..|...+.
T Consensus 92 --------~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~ 144 (601)
T PF00133_consen 92 --------RKDL-------------------GREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVW 144 (601)
T ss_dssp --------CSCS-------------------THHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHH
T ss_pred --------cccc-------------------ccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHH
Confidence 0000 112233344556778888999999999999987533 34556789
Q ss_pred HHHHHHHhCCCeee
Q 008743 281 GVIDELSKQGLVEE 294 (555)
Q Consensus 281 ~v~~~L~~~g~~~~ 294 (555)
.++..|.++|++|+
T Consensus 145 ~~F~~l~~kglIyr 158 (601)
T PF00133_consen 145 WQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHHhcCcEEe
Confidence 99999999999985
No 78
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=5.7e-14 Score=158.04 Aligned_cols=114 Identities=25% Similarity=0.273 Sum_probs=90.6
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHH
Q 008743 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (555)
+|.-|=.-=|.|+|.|||||.|+.++||++||..|..||+|..-.-.+=+|.++...+..
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~-------------------- 93 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIK-------------------- 93 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHH--------------------
Confidence 477777889999999999999999999999999999999999877666666544322210
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----cccCCcHHHH
Q 008743 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGV 282 (555)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~e-----s~~~~~~~~v 282 (555)
...+| +.+.+.....+++.+++||.++||..| ..|...++..
T Consensus 94 ---------~~~~P------------------------~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~ 140 (814)
T COG0495 94 ---------IGTDP------------------------AKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQ 140 (814)
T ss_pred ---------hCCCh------------------------HHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHH
Confidence 11233 234677778899999999999998654 3677789999
Q ss_pred HHHHHhCCCeee
Q 008743 283 IDELSKQGLVEE 294 (555)
Q Consensus 283 ~~~L~~~g~~~~ 294 (555)
+.+|.++|++|.
T Consensus 141 F~kL~ekGL~y~ 152 (814)
T COG0495 141 FLKLYEKGLAYR 152 (814)
T ss_pred HHHHHHCCCEEe
Confidence 999999999995
No 79
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.58 E-value=1e-14 Score=146.47 Aligned_cols=184 Identities=16% Similarity=0.180 Sum_probs=129.1
Q ss_pred CCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHHhc
Q 008743 136 SPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKN 215 (555)
Q Consensus 136 SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~ 215 (555)
.|+|||+|||||+|++++-...|| +.-|-=+.| |.|...
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLR---iEDtD~------------------------------------ 44 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVR---IEDLDP------------------------------------ 44 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---eCcCCC------------------------------------
Confidence 699999999999999999998888 334443333 233111
Q ss_pred ccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--ecccccCCcHHHHHHHHHhCCCee
Q 008743 216 RFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVE 293 (555)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~--~~es~~~~~~~~v~~~L~~~g~~~ 293 (555)
. +....+.+.+.++|+.||+..|. ...|.+.+...+++++|.++|.+|
T Consensus 45 ------~------------------------R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY 94 (272)
T TIGR03838 45 ------P------------------------REVPGAADDILRTLEAYGLHWDGEVVYQSQRHALYQAALDRLLAAGLAY 94 (272)
T ss_pred ------C------------------------CCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHHHHHHHHHHHcCCEE
Confidence 0 00122335667789999999862 234555556778889999999888
Q ss_pred ee------------------cc--------------eEEEEec-----------C--------CCCCeEEEecCCccccc
Q 008743 294 ES------------------QG--------------ARVIFIE-----------G--------VNIPLIIVKSDGGFNYA 322 (555)
Q Consensus 294 ~~------------------dG--------------a~~~~~~-----------g--------~~~d~vl~ksDG~~tY~ 322 (555)
.. +| ++-++++ | ...|.||.|+||.|||.
T Consensus 95 ~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~D~vi~R~Dg~ptY~ 174 (272)
T TIGR03838 95 PCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVGDFVLRRADGLFAYQ 174 (272)
T ss_pred ecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCCCEEEEecCCCcccc
Confidence 20 01 1112221 1 12578999999999998
Q ss_pred chhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccch
Q 008743 323 STDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 402 (555)
Q Consensus 323 ~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l 402 (555)
. |..++.. ..+.+||| .|.||...-++...+.++||+. .+.+.|+ ++|.+.+|+|||||+|.. ++
T Consensus 175 f---A~vVDD~-~~gIThVi--RG~D~l~~t~~q~~l~~aLg~~------~P~y~H~--pll~~~~g~kLSKR~~~~-~i 239 (272)
T TIGR03838 175 L---AVVVDDA-AQGITHVV--RGADLLDSTPRQIYLQRLLGLP------PPRYLHL--PLVVNADGEKLSKQNGAP-AL 239 (272)
T ss_pred C---hhhhhcc-cCCCCEEE--eCHhhhhccHHHHHHHHHhCCC------CCeEEec--hhhhCCCCCeeeccCCcc-ch
Confidence 4 6666766 57899995 9999988777666889999995 3678998 568889999999999954 55
Q ss_pred HHH
Q 008743 403 VDL 405 (555)
Q Consensus 403 ~dl 405 (555)
+++
T Consensus 240 ~~~ 242 (272)
T TIGR03838 240 DLS 242 (272)
T ss_pred hcC
Confidence 543
No 80
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=99.56 E-value=4.8e-15 Score=131.31 Aligned_cols=82 Identities=35% Similarity=0.631 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccccc
Q 008743 474 LLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 553 (555)
Q Consensus 474 lqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 553 (555)
|||||+|++||++|++.............+.++.|++|+..+.+||+++..++++++||.+|+||++||..||+||++|+
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~~ 80 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNVR 80 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ChHHHHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 79999999999999975421100001111468899999999999999999999999999999999999999999999999
Q ss_pred CC
Q 008743 554 VQ 555 (555)
Q Consensus 554 Vl 555 (555)
|+
T Consensus 81 I~ 82 (119)
T PF05746_consen 81 IL 82 (119)
T ss_dssp ST
T ss_pred cc
Confidence 86
No 81
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.55 E-value=4.5e-14 Score=143.30 Aligned_cols=136 Identities=20% Similarity=0.207 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCeeee--ecccccCCcHHHHHHHHHhCCCeee-----------e----------cc-------------
Q 008743 254 KEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVEE-----------S----------QG------------- 297 (555)
Q Consensus 254 ~~~~~~~~~Lgi~f~~--~~es~~~~~~~~v~~~L~~~g~~~~-----------~----------dG------------- 297 (555)
+.+.++|+.||+..|. +..|.+.+...+++++|.++|.+|. . +|
T Consensus 58 ~~I~~dL~wlGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~ 137 (299)
T PRK05710 58 DAILADLEWLGLHWDGPVLYQSQRHDAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPP 137 (299)
T ss_pred HHHHHHHHHCCCCCCCCceEeeccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCc
Confidence 4566788899998862 2234444556788888888888773 0 11
Q ss_pred eEEEEec-----------C--------CCCCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHH
Q 008743 298 ARVIFIE-----------G--------VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFS 358 (555)
Q Consensus 298 a~~~~~~-----------g--------~~~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~ 358 (555)
++-++++ | ...|.||.|+||.|+|. +|..++.. ..+.+||| .|.||...-.+...
T Consensus 138 ~iRlk~~~~~~~~~D~~~G~~~~~~~~~~~D~Vi~R~dg~ptY~---lA~vVDD~-~~gIThVv--RG~D~l~~t~~Q~~ 211 (299)
T PRK05710 138 AWRLRVPDAVIAFDDRLQGRQHQDLALAVGDFVLRRADGLFAYQ---LAVVVDDA-LQGVTHVV--RGADLLDSTPRQIY 211 (299)
T ss_pred eEEEEcCCCceEEEEecceeEeeCCCCCCCCEEEEecCCCcccc---chhHHhcc-cCCCCEEE--eChhhhhcCHHHHH
Confidence 1112221 1 22689999999999998 46667776 57899995 99999776666668
Q ss_pred HHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHH
Q 008743 359 AAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 359 ~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
+.++||+. .+.+.|+ .+|.+.+|+|||||.|.. .+++
T Consensus 212 l~~aLg~~------~P~y~H~--pll~~~~g~kLSKr~~~~-~i~~ 248 (299)
T PRK05710 212 LQQLLGLP------TPRYLHL--PLVLNADGQKLSKQNGAP-ALDA 248 (299)
T ss_pred HHHHcCCC------CCeEEEe--ecccCCCCCcccccCCcc-chhh
Confidence 88999995 4689998 568889999999999954 5554
No 82
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=7.6e-12 Score=137.90 Aligned_cols=135 Identities=20% Similarity=0.288 Sum_probs=90.5
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHH
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (555)
+...+|-..-||+||.|||||+=...|-|+|+|.-|..||+|...=..+-+|--...+......+.+. ..
T Consensus 74 ~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~---~~------- 143 (995)
T KOG0432|consen 74 GGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGG---KT------- 143 (995)
T ss_pred CCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcC---cc-------
Confidence 45566668999999999999999999999999999999999999888887775443333211111000 00
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeccccc-----CCcHHH
Q 008743 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFY-----NPYIPG 281 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~es~~-----~~~~~~ 281 (555)
-.+..|+.+. .+.|+ ..+..-..+.+.+++||-++||..|-+- +..+.+
T Consensus 144 ----------------Rh~lgRe~F~---------~~vw~-Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~e 197 (995)
T KOG0432|consen 144 ----------------RHDLGREEFL---------KEVWE-WKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTE 197 (995)
T ss_pred ----------------hhhcCHHHHH---------HHHHH-HHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHH
Confidence 0001111111 12232 2344445678899999999998765332 346889
Q ss_pred HHHHHHhCCCeeeecc
Q 008743 282 VIDELSKQGLVEESQG 297 (555)
Q Consensus 282 v~~~L~~~g~~~~~dG 297 (555)
.+-+|.+.|++|....
T Consensus 198 AFvrL~eeglIyR~~r 213 (995)
T KOG0432|consen 198 AFVRLHEEGLIYRANR 213 (995)
T ss_pred HHHHHHhcCceEecCc
Confidence 9999999999997443
No 83
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=5.3e-13 Score=136.92 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=98.5
Q ss_pred CCCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEEC
Q 008743 307 NIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG 386 (555)
Q Consensus 307 ~~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~ 386 (555)
..|.||+||||-|||.. |...+.. .++..|+| .|.+|..--.....+.+|+||.| +++.|++ ++.+
T Consensus 211 ~gD~VvmKSDgfPTYHf---AnVVDDh-~M~IsHVi--RGeEWlpST~KH~lLYkAfgW~p------PkFaHlp--Ll~n 276 (524)
T KOG1149|consen 211 EGDPVVMKSDGFPTYHF---ANVVDDH-LMGISHVI--RGEEWLPSTLKHILLYKAFGWQP------PKFAHLP--LLLN 276 (524)
T ss_pred CCCcEEEecCCCcceee---eeeecch-hcchhhee--ecchhccccHHHHHHHHHhCCCC------Cceeeee--eeec
Confidence 56889999999999995 4444544 46788986 99998665444447779999964 7899995 5788
Q ss_pred CCCccceeccCCccchHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhh-hhhHHHhhhccCCCCCcccccccc
Q 008743 387 EDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVG-YGAAKYFDLKNNRLTNYTFSFDQM 463 (555)
Q Consensus 387 ~~G~kmSkR~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~~~~~~~a~~vg-~~airy~~L~~~~~~~~~Fd~~~~ 463 (555)
+||+|+|||.|.+ ++.++.++++ +...+.+.--| |+.....+ =+. .+-+--|.+.+...+...+|.+++
T Consensus 277 ~d~sKLSKRqgD~-~vs~~~e~G~LPeallN~ial~G----wg~~~~~~---f~sl~eLieqF~i~~ltk~~a~ld~ekL 348 (524)
T KOG1149|consen 277 PDGSKLSKRQGDA-SVSHYREQGYLPEALLNYIALLG----WGFRTENE---FFSLEELIEQFSIERLTKSNAILDSEKL 348 (524)
T ss_pred CCcchhhhhcCcc-hHHHHHHcCCChHHHHHHHHHcC----CCcccccc---cccHHHHHHHhchhhhcccccccCHHHH
Confidence 9999999999965 7999999887 45666665432 22211110 011 123445677777777888888877
Q ss_pred ccccC
Q 008743 464 LNDKG 468 (555)
Q Consensus 464 ~~~~~ 468 (555)
..+|.
T Consensus 349 ~~~Nr 353 (524)
T KOG1149|consen 349 RFLNR 353 (524)
T ss_pred HHHHH
Confidence 66653
No 84
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.45 E-value=3.8e-13 Score=145.11 Aligned_cols=231 Identities=16% Similarity=0.132 Sum_probs=141.0
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHH
Q 008743 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (555)
++|+. =-.|+|||+|||||+|++++-..+||- +-|-=+.| +.|..+ +
T Consensus 10 g~v~t-RFAPsPtG~LHiGharaAlln~l~Ar~--~gG~~iLR---iEDTDp--------------~------------- 56 (523)
T PLN03233 10 GQIVT-RFPPEPSGYLHIGHAKAALLNDYYARR--YKGRLILR---FDDTNP--------------S------------- 56 (523)
T ss_pred CeEEE-eeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ECCCCC--------------C-------------
Confidence 34544 668999999999999999999999984 33443333 233211 0
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eecccccCCcHHHHHHHH
Q 008743 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDEL 286 (555)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~es~~~~~~~~v~~~L 286 (555)
+....+.+.+.++++.||+..| ....|.|-+...++.+.|
T Consensus 57 ---------------------------------------R~~~e~~~~I~~dL~WLGl~wD~~~~qSdr~~~y~~~a~~L 97 (523)
T PLN03233 57 ---------------------------------------KEKAEFEESIIEDLGKIEIKPDSVSFTSDYFEPIRCYAIIL 97 (523)
T ss_pred ---------------------------------------ccchHHHHHHHHHHHHhCCCCCCCccccccHHHHHHHHHHH
Confidence 0011222345556666666654 122344444455666666
Q ss_pred HhCCCeee----------------------------------------ecceEEEEecCC-------CCCeEEEecCCc-
Q 008743 287 SKQGLVEE----------------------------------------SQGARVIFIEGV-------NIPLIIVKSDGG- 318 (555)
Q Consensus 287 ~~~g~~~~----------------------------------------~dGa~~~~~~g~-------~~d~vl~ksDG~- 318 (555)
.++|.+|. .+|..++++.++ -.|.|+.|+||+
T Consensus 98 i~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~D~Vi~R~d~~~ 177 (523)
T PLN03233 98 IEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTP 177 (523)
T ss_pred HHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCCCCcCCEEEEEcCCc
Confidence 66666552 124455555432 257899999986
Q ss_pred -----------ccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECC
Q 008743 319 -----------FNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (555)
Q Consensus 319 -----------~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~ 387 (555)
|||. +|..++.. ..+.+|+| .|.||..+-++...++++||+. .+.+ |. |+.+. .
T Consensus 178 h~~~Gd~~~~~PtY~---fA~~VDD~-l~gITHvi--Rg~E~~~~t~~q~~l~~aLg~~------~P~~-~~-f~rln-~ 242 (523)
T PLN03233 178 HHRSGTAYKAYPTYD---LACPIVDS-IEGVTHAL--RTTEYDDRDAQFFWIQKALGLR------RPRI-HA-FARMN-F 242 (523)
T ss_pred ccccCCcccceeccC---Cceeeecc-ccCCCeEE--echhhhcCCHHHHHHHHHhCCC------CCee-ee-eEEEC-C
Confidence 5554 45555555 47899985 9999998877777888999994 3455 44 66554 6
Q ss_pred CCccceeccCCccchHHHHHHHHHH--------HHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCC-CCCccc
Q 008743 388 DGKRLRTRFSEVVRLVDLLDEAKNR--------SKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTF 458 (555)
Q Consensus 388 ~G~kmSkR~G~~v~l~dll~e~~~~--------a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~~~~~F 458 (555)
.|.|||||+. ..|++++.-. ....+..|| +-++|||-|++.... .++..+
T Consensus 243 ~~~kLSKR~l-----~~lV~~g~v~GWDDPRlpTi~~lrrrG----------------~~peAi~~f~~~~G~s~~~~~i 301 (523)
T PLN03233 243 MNTVLSKRKL-----TWFVDNGHVTGWDDARFPTIRGISRRG----------------IDIDALKMFMCSQGASRRVVNL 301 (523)
T ss_pred CCCcccccCc-----hhhhccCcccCccCCchHhHHHHHHCC----------------CCHHHHHHHHHHhCCCCCCcee
Confidence 7889999972 2233322100 111222222 457788888887753 567788
Q ss_pred cccccccc
Q 008743 459 SFDQMLND 466 (555)
Q Consensus 459 d~~~~~~~ 466 (555)
+|+.+-+.
T Consensus 302 ~~~~l~~~ 309 (523)
T PLN03233 302 DWAKFWAE 309 (523)
T ss_pred cHHHHHHH
Confidence 88876543
No 85
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.45 E-value=3.2e-13 Score=132.23 Aligned_cols=218 Identities=16% Similarity=0.078 Sum_probs=136.9
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHH
Q 008743 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 213 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 213 (555)
=-.|+|||+||+||+|++++....||-. .|-=+.| |.|.
T Consensus 5 RFAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLR---ieDt------------------------------------ 43 (238)
T cd00807 5 RFPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLR---FDDT------------------------------------ 43 (238)
T ss_pred ecCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEE---ecCC------------------------------------
Confidence 4579999999999999999998888753 3332222 2221
Q ss_pred hcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eecccccCCcHHHHHHHHHhCCCe
Q 008743 214 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELSKQGLV 292 (555)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~es~~~~~~~~v~~~L~~~g~~ 292 (555)
|+. +.+..+.+.+.++|+.||+..| ....|.+.+...++++.|.++|.+
T Consensus 44 ------D~~------------------------R~~~~~~~~I~~dL~wlGl~wD~~~~QS~r~~~Y~~~~~~L~~~g~a 93 (238)
T cd00807 44 ------NPE------------------------KEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQLYEYAEQLIKKGKA 93 (238)
T ss_pred ------CCc------------------------ccchHHHHHHHHHHHHcCCCCCCceecccCHHHHHHHHHHHHHcCCe
Confidence 110 0112233567789999999986 223455555678999999999999
Q ss_pred eeecceEEEEecCCCCCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCC
Q 008743 293 EESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST 372 (555)
Q Consensus 293 ~~~dGa~~~~~~g~~~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~ 372 (555)
|..- .+| .+.++ .|+|. +|...+.. ..+.+++| .|.|+...-++...+.++||+.+
T Consensus 94 Y~~~------~~~--~~~~i-----~ptY~---lA~vVDD~-~~gIThVv--RG~D~l~~t~~Q~~l~~aLg~~~----- 149 (238)
T cd00807 94 YVHH------RTG--DKWCI-----YPTYD---FAHPIVDS-IEGITHSL--CTLEFEDRRPSYYWLCDALRLYR----- 149 (238)
T ss_pred ecCC------CCC--CCEEE-----Eeccc---cceEeecc-ccCCCeEE--echhhhcCCHHHHHHHHHcCCCC-----
Confidence 9821 012 12222 37776 46666665 57899985 99999887666668889999952
Q ss_pred CCcEEEEEeeEEECCCCccceeccCCccchHHHH----HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhh
Q 008743 373 YPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL----DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL 448 (555)
Q Consensus 373 ~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll----~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L 448 (555)
+.+.|. +.+ +.+|.|||||.|.. .+++.. +.........+..+| +-++|++-|+.
T Consensus 150 -P~~~~~--~hl-n~~g~kLSKR~~~~-~i~~g~~~~wddpr~~~~~~l~~~G----------------~~peal~~~l~ 208 (238)
T cd00807 150 -PHQWEF--SRL-NLTYTVMSKRKLLQ-LVDEGYVDGWDDPRLPTLRGLRRRG----------------VTPEAIRQFIL 208 (238)
T ss_pred -CceeEE--EEE-CCCCCCccCcCchh-ccccCCcccccCcchHHHHHHHHcC----------------CCHHHHHHHHH
Confidence 443332 444 58999999999732 111100 000000111122222 34677777777
Q ss_pred ccC-CCCCcccccccccccc
Q 008743 449 KNN-RLTNYTFSFDQMLNDK 467 (555)
Q Consensus 449 ~~~-~~~~~~Fd~~~~~~~~ 467 (555)
... ..++..|||+++.++|
T Consensus 209 ~lG~s~~~~~~~~~~l~~~n 228 (238)
T cd00807 209 RQGVSKADSTIDWDKLEACV 228 (238)
T ss_pred HhCCCCCCcccCHHHHHHHH
Confidence 664 5789999999886654
No 86
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.43 E-value=8.7e-13 Score=143.83 Aligned_cols=129 Identities=11% Similarity=0.076 Sum_probs=87.3
Q ss_pred CCeEEEecC------------CcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCc
Q 008743 308 IPLIIVKSD------------GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPK 375 (555)
Q Consensus 308 ~d~vl~ksD------------G~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~ 375 (555)
.|.|+.|.+ |.|||. +|..++.. ..+.+|+| .|.|+..+-++...++++||+. .+.
T Consensus 208 rD~Vl~R~~~~~h~rtGdk~dgyPtYd---fA~vVDD~-l~gITHvl--Rg~E~l~~tp~q~~L~~aLg~~------~P~ 275 (601)
T PTZ00402 208 RDPVIYRVNLTPHARQGTKYKAYPTYD---FCCPIIDS-VEGVTHAL--RTNEYHDRNDQYYWFCDALGIR------KPI 275 (601)
T ss_pred cCCEEEEEcCCcccccCCCCceeeccC---cceeeEcc-ccCCceEe--echhhhhCcHHHHHHHHHhCCC------Cce
Confidence 467887754 667776 45555554 46889985 9999998887777888999994 367
Q ss_pred EEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH----HhhhhhhHHHhhhccC
Q 008743 376 ASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTA----EAVGYGAAKYFDLKNN 451 (555)
Q Consensus 376 ~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a----~~vg~~airy~~L~~~ 451 (555)
+.|++ + ++.+|.+||||++ ..+++++. -.+|++...-++. +-+.++|+|=|+....
T Consensus 276 ~~h~~--r-Ln~~g~kLSKRkl-----~~lv~~g~------------v~GWdDprlpTi~glrRrG~~peai~~f~~~~G 335 (601)
T PTZ00402 276 VEDFS--R-LNMEYSVMSKRKL-----TQLVDTHV------------VDGWDDPRFPTVRALVRRGLKMEALRQFVQEQG 335 (601)
T ss_pred EEEEe--e-EcCCCCcccccCC-----hhhhhcCc------------ccccCCCccHhHHHHHHcCCCHHHHHHHHHHhC
Confidence 88874 4 5688999999998 44555532 1233322221222 2245677776666664
Q ss_pred -CCCCccccccccccccC
Q 008743 452 -RLTNYTFSFDQMLNDKG 468 (555)
Q Consensus 452 -~~~~~~Fd~~~~~~~~~ 468 (555)
..++..|||+.+.+.+.
T Consensus 336 vsk~~~~~d~~~L~~~nr 353 (601)
T PTZ00402 336 MSKTVNFMEWSKLWYFNT 353 (601)
T ss_pred CCCCCcccCHHHHHHHHH
Confidence 57899999998876653
No 87
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.38 E-value=9.8e-12 Score=134.73 Aligned_cols=129 Identities=10% Similarity=-0.010 Sum_probs=85.5
Q ss_pred cceEEEEecC-----C--CCCeEEEec-------CC-----cccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHH
Q 008743 296 QGARVIFIEG-----V--NIPLIIVKS-------DG-----GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMV 356 (555)
Q Consensus 296 dGa~~~~~~g-----~--~~d~vl~ks-------DG-----~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~ 356 (555)
+|..+++... . -.|.|+.|+ +| .|||. +|..+... ..+.+|+| .|.+|..+-++.
T Consensus 170 ~g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYd---fA~~vdD~-l~gITHvl--Rg~E~~~~t~~~ 243 (554)
T PRK05347 170 EGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYD---FAHCISDA-IEGITHSL--CTLEFEDHRPLY 243 (554)
T ss_pred CCcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcC---ccceeecc-ccCCceEE--eccccccChHHH
Confidence 5656665541 1 147788888 47 67775 46555554 46889996 999999988888
Q ss_pred HHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCc------c---------chHHHHHHHHHHHHHHHHHhc
Q 008743 357 FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV------V---------RLVDLLDEAKNRSKAVLIERG 421 (555)
Q Consensus 357 ~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~------v---------~l~dll~e~~~~a~~~~~~~~ 421 (555)
..++++||+. ..+... -|+.+ +.+|.+||||++.. + ++..|.+.+
T Consensus 244 ~~i~~alg~~-----~~P~~~--~F~rl-n~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG------------ 303 (554)
T PRK05347 244 DWVLDNLPIP-----PHPRQY--EFSRL-NLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRG------------ 303 (554)
T ss_pred HHHHHHcCCC-----CCCceE--EEEEE-CCCCCccccccchhccccCcccCccCCcchhHHHHHHCC------------
Confidence 7889999962 123222 24555 46889999999642 1 456665554
Q ss_pred CCCCCCHHHHHHHHHhhhhhhHHHhhhccC-CCCCccccccccccc
Q 008743 422 KDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLND 466 (555)
Q Consensus 422 ~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~~~~~~~ 466 (555)
+-++||+=|++... ..++..++|+.+.+.
T Consensus 304 ----------------~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~ 333 (554)
T PRK05347 304 ----------------YTPESIREFCERIGVTKQDSVIDMSMLESC 333 (554)
T ss_pred ----------------CCHHHHHHHHHHhCCCCCCCeecHHHHHHH
Confidence 45677777777764 356677788776443
No 88
>PLN02907 glutamate-tRNA ligase
Probab=99.37 E-value=2.4e-12 Score=145.38 Aligned_cols=236 Identities=14% Similarity=0.121 Sum_probs=149.1
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHH
Q 008743 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (555)
.+|+. =-.|+|||+|||||+|++++...+|| .+-|-=+.| +.|... +
T Consensus 212 ~~v~t-RFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR---~eDTdp--------------~------------- 258 (722)
T PLN02907 212 GKVCT-RFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVR---FDDTNP--------------S------------- 258 (722)
T ss_pred CceEE-eeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ecCCCC--------------C-------------
Confidence 34544 66899999999999999999999998 344443333 233211 0
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eecccccCCcHHHHHHHH
Q 008743 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDEL 286 (555)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~es~~~~~~~~v~~~L 286 (555)
.. ...+.+.+.++++.||+..| ....|.|-+...++.++|
T Consensus 259 ----------r~-----------------------------~~e~~~~I~~dl~wLG~~~d~~~~qS~r~~~y~~~a~~L 299 (722)
T PLN02907 259 ----------KE-----------------------------SDEFVENILKDIETLGIKYDAVTYTSDYFPQLMEMAEKL 299 (722)
T ss_pred ----------cC-----------------------------ChHHHHHHHHHHHHcCCCCCCcccccccHHHHHHHHHHH
Confidence 00 11223455667777777765 223455555566777777
Q ss_pred HhCCCeee----------------------------------------ecceEEEEecC-------CCCCeEEEecCC--
Q 008743 287 SKQGLVEE----------------------------------------SQGARVIFIEG-------VNIPLIIVKSDG-- 317 (555)
Q Consensus 287 ~~~g~~~~----------------------------------------~dGa~~~~~~g-------~~~d~vl~ksDG-- 317 (555)
+++|.+|. .+|..++++.- .-.|.|+.|.||
T Consensus 300 i~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D~v~~R~~~~~ 379 (722)
T PLN02907 300 IKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTP 379 (722)
T ss_pred HHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCcccCEEEEecCCc
Confidence 77777762 11223333321 124788999998
Q ss_pred ----------cccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECC
Q 008743 318 ----------GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (555)
Q Consensus 318 ----------~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~ 387 (555)
.|||. +|..++.. ..+.+|+| .|.||..+-++...++++||+.. +...| |+.+. .
T Consensus 380 h~~~gd~~~~~PtY~---fa~~vdD~-~~gIThvl--Rg~e~~~~t~~q~~l~~~lg~~~------p~~~~--f~~l~-~ 444 (722)
T PLN02907 380 HHRIGSKYKVYPTYD---FACPFVDA-LEGVTHAL--RSSEYHDRNAQYYRILEDMGLRK------VHIWE--FSRLN-F 444 (722)
T ss_pred ccccCCccceeeccC---CceEEEcc-cCCCceEe--ecHhhhhChHHHHHHHHHcCCCC------CeeEE--EEEEc-C
Confidence 45554 45444444 46889985 99999988877778889999842 33333 45544 6
Q ss_pred CCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh----hhhhhHHHhhhccC-CCCCccccccc
Q 008743 388 DGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEA----VGYGAAKYFDLKNN-RLTNYTFSFDQ 462 (555)
Q Consensus 388 ~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~----vg~~airy~~L~~~-~~~~~~Fd~~~ 462 (555)
+|.+||||+ +..+++++ .-.+|++..+-++..- +-++|++=|++... ..++..|||++
T Consensus 445 ~~~~lSKR~-----l~~~v~~g------------~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~ 507 (722)
T PLN02907 445 VYTLLSKRK-----LQWFVDNG------------KVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDK 507 (722)
T ss_pred CCccccccc-----hHhHhhcC------------cccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHH
Confidence 788999998 56666653 2234544332222222 56788888888775 46788999998
Q ss_pred ccccc
Q 008743 463 MLNDK 467 (555)
Q Consensus 463 ~~~~~ 467 (555)
+.+.|
T Consensus 508 l~~~n 512 (722)
T PLN02907 508 LWTIN 512 (722)
T ss_pred HHHHH
Confidence 87654
No 89
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.37 E-value=2.5e-12 Score=140.30 Aligned_cols=239 Identities=15% Similarity=0.084 Sum_probs=145.4
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHH
Q 008743 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (555)
.+|+. =-.|+|||+|||||+|++++-+.+||- |+....--++|....
T Consensus 92 ~~vvt-RFaPsPtG~LHiGharaalln~~~Ar~-----~~G~~iLRidDTDp~--------------------------- 138 (560)
T TIGR00463 92 GEVVM-RFAPNPSGPLHIGHARAAILNQYFAKK-----YKGKLIIRFDDTDPR--------------------------- 138 (560)
T ss_pred CeeEE-EeCCCCCCCccHHHHHHHHHHHHHHHh-----cCCEEEEEeCcCCcc---------------------------
Confidence 34544 668999999999999999999999962 333333334442210
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eecccccCCcHHHHHHHH
Q 008743 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDEL 286 (555)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~es~~~~~~~~v~~~L 286 (555)
.. ...+.+.+.++++.||+..| ....|.|.+...++++.|
T Consensus 139 ----------R~-----------------------------~~e~~~~I~edL~wLGi~~d~~~~qSd~~~~y~~~a~~L 179 (560)
T TIGR00463 139 ----------RV-----------------------------KPEAYDMILEDLDWLGVKGDEVVYQSDRIEEYYDYCRKL 179 (560)
T ss_pred ----------cc-----------------------------cHHHHHHHHHHHHHcCCCCCccccccccHHHHHHHHHHH
Confidence 00 01123456668888888864 333455656677778888
Q ss_pred HhCCCeeee----------------------------------------cceEEEEecC-------CCCCeEEEecCCcc
Q 008743 287 SKQGLVEES----------------------------------------QGARVIFIEG-------VNIPLIIVKSDGGF 319 (555)
Q Consensus 287 ~~~g~~~~~----------------------------------------dGa~~~~~~g-------~~~d~vl~ksDG~~ 319 (555)
.++|++|.. +|..++++.- .-.|.|+.|.++++
T Consensus 180 i~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD~V~~R~~~~~ 259 (560)
T TIGR00463 180 IEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDWVIFRINKTP 259 (560)
T ss_pred HHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccCcEEEEecCCC
Confidence 888877730 1233444431 11467888887653
Q ss_pred c---------ccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCc
Q 008743 320 N---------YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 390 (555)
Q Consensus 320 t---------Y~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~ 390 (555)
- |.|=|+|..++.. ..+.+|+| .|.|+...-.+...+..++|+. .+.+.|. +++.+.+|.
T Consensus 260 h~~~Gd~~~~~PtYdfA~~VDD~-l~gITHvi--Rg~E~~~nT~rq~yl~~~lg~~------~P~~~h~--~~l~~~~~~ 328 (560)
T TIGR00463 260 HPRTGDKYKVYPTMDFSVPIDDH-LLGVTHVL--RGKDHIDNERKQQYIYMYFGWE------LPEFIHW--GRLKINDVR 328 (560)
T ss_pred ccccCCEEEEEeccccceEeecc-cCCCCeEE--echhhhcCCHHHHHHHHHcCCC------CCeEEEE--cceecCCCc
Confidence 2 3333456555555 46889985 8999977444444667888984 3678887 568878888
Q ss_pred cceeccCCccchHH-HH---HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccC-CCCCcccccccccc
Q 008743 391 RLRTRFSEVVRLVD-LL---DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLN 465 (555)
Q Consensus 391 kmSkR~G~~v~l~d-ll---~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~~~~~~ 465 (555)
++|||+.... +.+ .+ |.-..-....+..|| +-++|+|-|++... ..++..++|+.+-+
T Consensus 329 kLskk~k~~~-l~~g~~~gWdDPr~~ti~~lrrrG----------------~~peAi~~f~~~~G~s~~~~~i~~~~l~~ 391 (560)
T TIGR00463 329 TLSTSSKLKG-IVRGDYSGWDDPRLPTLRAVRRRG----------------ITPEAIRNFMLSIGVKRNDVNLSWKNIYA 391 (560)
T ss_pred Eecchhhhhh-hhccCccCcCCccHHHHHHHHHCC----------------CCHHHHHHHHHHhCCCCCCceeeHHHHHH
Confidence 9998764210 000 00 000001122233333 45788888888875 45788888887644
Q ss_pred c
Q 008743 466 D 466 (555)
Q Consensus 466 ~ 466 (555)
.
T Consensus 392 ~ 392 (560)
T TIGR00463 392 F 392 (560)
T ss_pred H
Confidence 3
No 90
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=99.36 E-value=1.4e-12 Score=115.98 Aligned_cols=82 Identities=40% Similarity=0.720 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhhCCC---hhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccc
Q 008743 474 LLYAHARICSIIRKSGKD---IEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYS 550 (555)
Q Consensus 474 lqYa~aR~~silrk~~~~---~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~ 550 (555)
+||+|+|++||++|++.. .+.....+...+.++.|++|+..+..||+++..++.+.+|+.+|.|+++|+..||+||+
T Consensus 1 iqY~~~Ri~nIl~k~~~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~fy~ 80 (122)
T smart00836 1 VQYAHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYN 80 (122)
T ss_pred CcHHHHHHHHHHHHHHhcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHc
Confidence 699999999999998631 11100112233558999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 008743 551 NCQVQ 555 (555)
Q Consensus 551 ~~~Vl 555 (555)
+|+|+
T Consensus 81 ~v~V~ 85 (122)
T smart00836 81 KCRVL 85 (122)
T ss_pred cCccc
Confidence 99985
No 91
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1e-11 Score=141.30 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=116.9
Q ss_pred EEEeeCCccc-cHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHH
Q 008743 342 IYVTDVGQQL-HFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419 (555)
Q Consensus 342 I~V~g~dq~~-hf~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~ 419 (555)
+|+-|.||+. -|.... ......|.+ |....+.| |++++++|+|||||.||+|++.|++++
T Consensus 558 ~~lEGsDQ~RGWF~Ssl~~s~a~~~~a----PYk~vltH---GfvlDe~GrKMSKSlGN~v~P~~V~~~----------- 619 (933)
T COG0060 558 FYLEGSDQTRGWFYSSLLTSTALFGRA----PYKNVLTH---GFVLDEKGRKMSKSLGNVVDPQDVIDK----------- 619 (933)
T ss_pred EEEEeccccchhHHHHHHHHHHHcCCc----hHHHHhhc---ccEECCCCCCccccCCCcCCHHHHHHh-----------
Confidence 5678999875 444332 333445654 34445555 889999999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHHHHHHHhh-----CCChhh
Q 008743 420 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKS-----GKDIEE 494 (555)
Q Consensus 420 ~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~-----~~~~~~ 494 (555)
+|+|++|++.++..+..|+.|+++.+..... ++.|+...+|=. +.++..
T Consensus 620 ------------------yGADiLRLwv~ssd~~~dl~~s~~il~~~~~--------~~r~irNt~rF~l~nl~~fdp~~ 673 (933)
T COG0060 620 ------------------YGADILRLWVASSDYWEDLRFSDEILKQVRE--------VYRKIRNTYRFLLGNLDDFDPKK 673 (933)
T ss_pred ------------------hCchheeeeeeecCchhccccCHHHHHHHHH--------HHHHHHHHHHHHHHhccCCCccc
Confidence 7999999999999999999999998433221 112222222211 111110
Q ss_pred hhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHH-HHHhccc
Q 008743 495 LKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLS-EYFTRFY 549 (555)
Q Consensus 495 ~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La-~~fn~fY 549 (555)
.. ....-..+.++.++.++..+...+.+++++|+.|.+++.|++++ ..+++||
T Consensus 674 -~~-~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Y 727 (933)
T COG0060 674 -DA-VLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWY 727 (933)
T ss_pred -cc-cchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHH
Confidence 00 00001245678899999999999999999999999999999999 9999999
No 92
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.25 E-value=1.1e-10 Score=126.35 Aligned_cols=127 Identities=10% Similarity=-0.046 Sum_probs=84.3
Q ss_pred cccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccC
Q 008743 318 GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (555)
Q Consensus 318 ~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G 397 (555)
.|||. +|..++.. ..+.+|+| .|.||..+-.+-..+.+.+|+.. .+.. ..|+.+ +.+|.|||||++
T Consensus 182 yPtYd---fa~~vdD~-l~gITHvi--Rg~E~~~nt~~Y~~~~~~l~~~~-----~P~~--~~F~rl-n~~~~kLSKRk~ 247 (522)
T TIGR00440 182 YPMYD---FTHCISDA-MENITHSL--CTLEFQDNRRLYDWVLDNIHIFP-----RPAQ--YEFSRL-NLEGTVLSKRKL 247 (522)
T ss_pred EeCcC---Cceeehhc-cCCCceEe--ecHhhhhcHHHHHHHHHhcCccC-----CCce--EEEEEE-CCCCCCcccccc
Confidence 56665 45555554 46889996 99999888766656667777631 1222 245654 478999999998
Q ss_pred Cc---------------cchHHHHHHHHH--HHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccc
Q 008743 398 EV---------------VRLVDLLDEAKN--RSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSF 460 (555)
Q Consensus 398 ~~---------------v~l~dll~e~~~--~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~ 460 (555)
.. .++..+.+.++. ...+++..-|-...-+..++..+ -+.+|.|++...+.....||.
T Consensus 248 ~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l-----~~~~r~f~~~~~~r~~av~d~ 322 (522)
T TIGR00440 248 AQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRL-----ESCIREDLNENAPRAMAVIDP 322 (522)
T ss_pred hhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhH-----HHHHHHhhhhcCccccccccc
Confidence 75 378899888874 55666665543321111122222 245789999998899999999
Q ss_pred ccc
Q 008743 461 DQM 463 (555)
Q Consensus 461 ~~~ 463 (555)
.++
T Consensus 323 ~kl 325 (522)
T TIGR00440 323 VEV 325 (522)
T ss_pred ceE
Confidence 887
No 93
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.24 E-value=9.5e-11 Score=136.75 Aligned_cols=166 Identities=11% Similarity=0.039 Sum_probs=116.8
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHH
Q 008743 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKA 415 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~ 415 (555)
+++| +++.|.||...+--.+.+...+.++. .++...+.+ .|+|+. +|+|||||+||+|++.|++++
T Consensus 529 ~P~D--~~~~GkDii~~Hl~~~~~~~~a~~~~--~~~Pk~v~~--hG~vl~-~G~KMSKS~GNvVdp~eii~~------- 594 (897)
T PRK12300 529 YPVD--WRHSGKDLIPNHLTFFIFNHVAIFPE--EKWPRGIVV--NGFVLL-EGKKMSKSKGNVIPLRKAIEE------- 594 (897)
T ss_pred CCce--EEEeeeccCccHHHHHHHHHHHhcCC--CccCcEEEE--cceEEE-CCccccCcCCCCCCHHHHHHH-------
Confidence 4566 66899999642111112222333321 134334444 488886 799999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhcc-CCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCChhh
Q 008743 416 VLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEE 494 (555)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~-~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~ 494 (555)
+|+|++|||+++. .+..|.+|+++.+... .....|+.++.++......
T Consensus 595 ----------------------yGaDalRl~L~~~~~~~~D~~fs~~~v~~~--------~~~l~r~~~~~~~~~~~~~- 643 (897)
T PRK12300 595 ----------------------YGADVVRLYLTSSAELLQDADWREKEVESV--------RRQLERFYELAKELIEIGG- 643 (897)
T ss_pred ----------------------cChHHHHHHHHhCCCCCCCCccCHHHHHHH--------HHHHHHHHHHHHHHhcCCC-
Confidence 8999999999986 5689999999876332 2233577777766432110
Q ss_pred hhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHH-HHHHHHhcccccc
Q 008743 495 LKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLY-NLSEYFTRFYSNC 552 (555)
Q Consensus 495 ~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~-~La~~fn~fY~~~ 552 (555)
. .. ..+.++.++..+..+.+.+.+++++++++.+++.++ .+...+|.|.+.+
T Consensus 644 --~---~~-~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~~~ 696 (897)
T PRK12300 644 --E---EE-LRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLRRV 696 (897)
T ss_pred --c---cc-cCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 11 135577899999999999999999999999998875 6888888776654
No 94
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.16 E-value=4.7e-10 Score=126.69 Aligned_cols=117 Identities=13% Similarity=-0.027 Sum_probs=73.2
Q ss_pred CCeEEEecCC------------cccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCc
Q 008743 308 IPLIIVKSDG------------GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPK 375 (555)
Q Consensus 308 ~d~vl~ksDG------------~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~ 375 (555)
.|.|+.|+++ .|||. +|..++.. ..+.+|+| .|.||..+-+....++++||+.+ ..+.
T Consensus 191 rD~v~~R~~~~~H~~~Gd~~~i~PtYd---fa~~vdD~-l~gITHvl--Rg~E~~~~~~~~~~l~~~l~~~~----~~P~ 260 (771)
T PRK14703 191 RDPLLYRIRHAHHYRTGDEWCIYPMYD---FAHPLEDA-IEGVTHSI--CTLEFENNRAIYDWVLDHLGPWP----PRPR 260 (771)
T ss_pred CCCEEEEEcCCCCCCcCCCCCcCCCcc---ccceeecc-ccCCcEEE--ecHhhhhccHHHHHHHHHhCCCC----CCcc
Confidence 3778888753 34444 45444444 46889986 89999887777777889996421 1132
Q ss_pred EEEEEeeEEECCCCccceecc-------CCcc--------chHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhh
Q 008743 376 ASHVGFGLVLGEDGKRLRTRF-------SEVV--------RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGY 440 (555)
Q Consensus 376 ~~Hv~~g~v~~~~G~kmSkR~-------G~~v--------~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~ 440 (555)
.. .||.+.. .|.+||||+ |.+- ++..+.+.+ +-+
T Consensus 261 ~~--~f~rl~l-~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG----------------------------~~p 309 (771)
T PRK14703 261 QY--EFARLAL-GYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRG----------------------------VTP 309 (771)
T ss_pred ee--EEEEecc-CCCcccccCchhccccCcccCCCCCchhhHHHHHHCC----------------------------CCH
Confidence 22 2455553 577999998 3221 344444432 457
Q ss_pred hhHHHhhhccC-CCCCcccccccccc
Q 008743 441 GAAKYFDLKNN-RLTNYTFSFDQMLN 465 (555)
Q Consensus 441 ~airy~~L~~~-~~~~~~Fd~~~~~~ 465 (555)
+|||-|++... ..++..++|+.+.+
T Consensus 310 eAi~~f~~~lG~s~~~~~i~~~~L~~ 335 (771)
T PRK14703 310 EAIRDFADQIGVAKTNSTVDIGVLEF 335 (771)
T ss_pred HHHHHHHHHhCCCccCceecHHHHHH
Confidence 78888777764 35677788877643
No 95
>PLN02859 glutamine-tRNA ligase
Probab=99.15 E-value=2.2e-10 Score=128.13 Aligned_cols=102 Identities=13% Similarity=0.032 Sum_probs=69.9
Q ss_pred hHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCc-----
Q 008743 325 DLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV----- 399 (555)
Q Consensus 325 DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~----- 399 (555)
|+|..+... ..+.+|+| .|.+|..+-++..-++++||+. .+.+.|. + .++.+|.+||||++..
T Consensus 445 dFA~~vdD~-legITHvL--Rg~E~~~~~~~y~wl~~aLg~~------~P~~~~f--~-rLn~~~t~LSKRkl~~lV~~g 512 (788)
T PLN02859 445 DYAHCIVDS-LENITHSL--CTLEFETRRASYYWLLDSLGLY------QPYVWEY--S-RLNVTNTVMSKRKLNRLVTEK 512 (788)
T ss_pred ccccccccc-ccCCceEe--echhhhcCCHHHHHHHHHcCCC------CCcEEee--e-eECCCCCcccCcCchhccccC
Confidence 456555554 46889986 8999988877766788999984 3667786 5 4568999999999854
Q ss_pred ----------cchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCC-CCCc-cccccccccc
Q 008743 400 ----------VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNY-TFSFDQMLND 466 (555)
Q Consensus 400 ----------v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~~~~-~Fd~~~~~~~ 466 (555)
.++..|.+.+ +-++||+=|+..... ..+. .|+|+.+.++
T Consensus 513 ~V~GWDDPRl~Tl~glRrrG----------------------------~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~~ 563 (788)
T PLN02859 513 YVDGWDDPRLLTLAGLRRRG----------------------------VTPTAINAFCRGIGITRSDNSLIRMDRLEHH 563 (788)
T ss_pred cccCCCCCcchhHHHHHHCC----------------------------CCHHHHHHHHHHhCCCCCCCceecHHHHHhh
Confidence 2445555543 456777777776643 2344 5777777444
No 96
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=4.6e-09 Score=107.62 Aligned_cols=331 Identities=14% Similarity=0.191 Sum_probs=212.2
Q ss_pred CCCceEEEEecCCCCCCCCcccchhhhh-HHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccH
Q 008743 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTI-IGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI 203 (555)
Q Consensus 125 ~~~~~v~Ve~~SpNp~kplHvGHlR~~i-iGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i 203 (555)
.+...++|--+=|-++-..|+|+.=..+ -+|+.||..+..|+...+....+.+|+....-
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetk------------------- 71 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETK------------------- 71 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHH-------------------
Confidence 3456788888889999999999977554 49999999999999999999888888744321
Q ss_pred HHHHHHHHHHhcccCCChHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeccc---ccCCcH
Q 008743 204 GELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSG-EPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES---FYNPYI 279 (555)
Q Consensus 204 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~g-d~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~es---~~~~~~ 279 (555)
.+|+| .| +++|+....-++..|+.++|.||+++.. -..+..
T Consensus 72 -----------------------------aleeg~tP------~elcdKyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~ 116 (567)
T KOG1247|consen 72 -----------------------------ALEEGLTP------QELCDKYHGIHKVVYDWFKIDFDEFGRTTTKTQTEIC 116 (567)
T ss_pred -----------------------------HHHccCCH------HHHHHhcchhHHHHHHhhcccccccCcccCcchhHHH
Confidence 11111 11 4567777777888999999999988652 234678
Q ss_pred HHHHHHHHhCCCeeeec--ceEEEE---------e----c--------CC---------------CCCeEEEecCCcccc
Q 008743 280 PGVIDELSKQGLVEESQ--GARVIF---------I----E--------GV---------------NIPLIIVKSDGGFNY 321 (555)
Q Consensus 280 ~~v~~~L~~~g~~~~~d--Ga~~~~---------~----~--------g~---------------~~d~vl~ksDG~~tY 321 (555)
+.++..|.++|++.+.. --.|-. + + || ++...|.++ +|+|
T Consensus 117 Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDqcd~cG~l~N~~el~~pkc~ic~~--~p~~ 194 (567)
T KOG1247|consen 117 QDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQCDKCGKLVNAAELKIPKCKICQA--GPVV 194 (567)
T ss_pred HHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCccccchhhhhhhhhcCHHHhcCcchheecc--CCee
Confidence 99999999999876532 111110 0 1 21 011122222 2332
Q ss_pred c-----chh---------------------------HHHHHHHhh----------hcC--------CCeEEEEeeCCccc
Q 008743 322 A-----STD---------------------------LAALWYRLN----------EEK--------AEWIIYVTDVGQQL 351 (555)
Q Consensus 322 ~-----~~D---------------------------iA~~~~r~~----------~~~--------~d~iI~V~g~dq~~ 351 (555)
. .-| |--.|.|.. +|| -|++.|||=....+
T Consensus 195 ~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPle~fk~KVfYVWFDA~IG 274 (567)
T KOG1247|consen 195 RQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPLEKFKDKVFYVWFDAPIG 274 (567)
T ss_pred eeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcChhhhcccEEEEEEcCcce
Confidence 2 111 111122110 122 38999999555433
Q ss_pred c----------HHHHH------HHHHHcCCCCCCCCC---------------CCcEEEEEe-eEEECCCCccceeccCCc
Q 008743 352 H----------FDMVF------SAAKRAGWLSADDST---------------YPKASHVGF-GLVLGEDGKRLRTRFSEV 399 (555)
Q Consensus 352 h----------f~~~~------~~l~~lG~~~~~~~~---------------~~~~~Hv~~-g~v~~~~G~kmSkR~G~~ 399 (555)
+ +.+.+ .+.+.+|-+. -++ -+.+.|+.- +.++-++| |+|||+|..
T Consensus 275 Ylsit~~yt~ew~kWwknpE~v~LyqFmgKDN--VpFHtviFP~s~lgt~en~t~v~~l~aTeYLnyE~g-KFSKSrgvG 351 (567)
T KOG1247|consen 275 YLSITKNYTDEWEKWWKNPENVELYQFMGKDN--VPFHTVIFPCSQLGTEENYTVVHHLSATEYLNYEDG-KFSKSRGVG 351 (567)
T ss_pred EEEeehhhhHHHHHHhcCHhhhhHHHHhccCC--CcceeeecchhhhcCCCCchhheeechhhhhccccC-ccccccccc
Confidence 3 22111 3445556420 000 011122210 11233455 699999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCC-CCCccccccccccc-cC----ChhHH
Q 008743 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLND-KG----NTAVY 473 (555)
Q Consensus 400 v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~~~~~Fd~~~~~~~-~~----n~~~y 473 (555)
|.=.++.+.+ ++++..||++|+.+| .+|..|+|+++... |+ |.|+|
T Consensus 352 vFG~~aqd~g----------------------------i~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNF 403 (567)
T KOG1247|consen 352 VFGNDAQDTG----------------------------IPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNF 403 (567)
T ss_pred ccccccccCC----------------------------CCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHH
Confidence 9887776653 788999999999988 57999999998775 43 55666
Q ss_pred HHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccc
Q 008743 474 LLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 552 (555)
Q Consensus 474 lqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~ 552 (555)
| +|+.+.......+. +|. ..+.+ ....|+..+..+-....++++.-.....++-+++++..-|.|....
T Consensus 404 v----NR~l~fv~~~~~g~--Vp~---~~~~~-~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~ 472 (567)
T KOG1247|consen 404 V----NRVLKFVAAKYNGV--VPE---MELTS-GDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQEN 472 (567)
T ss_pred H----HHHHHHHHHhhCCc--ccc---eeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence 6 79888775433332 121 12322 2567888888888888889999999999999999999999998654
No 97
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=99.03 E-value=2.1e-09 Score=116.68 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=27.7
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHH
Q 008743 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARM 160 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~lari 160 (555)
.+|+. =-.|+|||+|||||+|++++-..+||-
T Consensus 50 gkv~t-RFaPsPtG~LHiGharaalln~~~Ar~ 81 (574)
T PTZ00437 50 GKPYF-RFPPEPNGFLHIGHAKSMNLNFGSARA 81 (574)
T ss_pred CcEEE-EeCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 45655 668999999999999999999999985
No 98
>PLN02959 aminoacyl-tRNA ligase
Probab=98.77 E-value=8.5e-08 Score=113.87 Aligned_cols=62 Identities=19% Similarity=0.111 Sum_probs=56.8
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHH
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYL 188 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~ 188 (555)
..+..|.+.-|++||+|||||++|.++.|+++|..+..||+|.+....+..|..+...+..+
T Consensus 44 ~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~ 105 (1084)
T PLN02959 44 GEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKL 105 (1084)
T ss_pred CCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHH
Confidence 35689989999999999999999999999999999999999999999999999998776443
No 99
>PLN02959 aminoacyl-tRNA ligase
Probab=98.58 E-value=4.1e-07 Score=108.13 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=80.3
Q ss_pred eeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccC-CCCCcccc
Q 008743 381 FGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFS 459 (555)
Q Consensus 381 ~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd 459 (555)
.|+|+ .+|+|||||+||+|++.|++++ +|+|++||++++.. ...|.+|+
T Consensus 709 ~G~V~-~~G~KMSKSkGNvI~p~diI~k-----------------------------yGADalRl~la~~~~~~~D~nF~ 758 (1084)
T PLN02959 709 NGHLM-LNSEKMSKSTGNFLTLRQAIEE-----------------------------FSADATRFALADAGDGVDDANFV 758 (1084)
T ss_pred ccEEe-cCCcCccccCCCcCCHHHHHHH-----------------------------hCchHHHHHHhhcCCccCCCCcc
Confidence 37777 6899999999999999999998 89999999999874 46789998
Q ss_pred ccccccccCChhHHHHHHHHHHHHHHH---hhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHH
Q 008743 460 FDQMLNDKGNTAVYLLYAHARICSIIR---KSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCE 536 (555)
Q Consensus 460 ~~~~~~~~~n~~~ylqYa~aR~~silr---k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~ 536 (555)
++.+.. + ..|+.+.++ ..-....... ........++.++..|......+.+++++++.+.+++
T Consensus 759 ~k~~n~-----~------~~~l~n~~~~~~~~~~~~~~~~---~~~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~ 824 (1084)
T PLN02959 759 FETANA-----A------ILRLTKEIAWMEEVLAAESSLR---TGPPSTYADRVFENEINIAIAETEKNYEAMMFREALK 824 (1084)
T ss_pred HHHHHH-----H------HHHHHHHHHHHHHhhhhhcccC---CcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 775432 1 112222211 1000000000 0011145678999999999999999999999999988
Q ss_pred HH
Q 008743 537 YL 538 (555)
Q Consensus 537 yl 538 (555)
.+
T Consensus 825 ~~ 826 (1084)
T PLN02959 825 SG 826 (1084)
T ss_pred HH
Confidence 73
No 100
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=8.4e-08 Score=103.77 Aligned_cols=114 Identities=21% Similarity=0.314 Sum_probs=83.3
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHH
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (555)
++|+++ --=|.|.|.|||||.|-..|.|+|||+.|.+||+|.--...+-+|..-..-
T Consensus 57 k~KYiL-sMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENA---------------------- 113 (876)
T KOG0435|consen 57 KKKYIL-SMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENA---------------------- 113 (876)
T ss_pred CCceEE-EecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhH----------------------
Confidence 444555 456999999999999999999999999999999999877666655422111
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----cccCCcHHH
Q 008743 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~e-----s~~~~~~~~ 281 (555)
+.++ ..+| +.| ...-++.+++.+++||+.|||..| ..|-...+.
T Consensus 114 ------Aier-gv~P---------------------~sW---T~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQw 162 (876)
T KOG0435|consen 114 ------AIER-GVHP---------------------ASW---TINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQW 162 (876)
T ss_pred ------HHhc-CCCc---------------------hhh---hHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHH
Confidence 0000 0111 223 223446788899999999999765 356667899
Q ss_pred HHHHHHhCCCeee
Q 008743 282 VIDELSKQGLVEE 294 (555)
Q Consensus 282 v~~~L~~~g~~~~ 294 (555)
++=.|-++|++|.
T Consensus 163 iFlkLfe~GLAYq 175 (876)
T KOG0435|consen 163 IFLKLFEKGLAYQ 175 (876)
T ss_pred HHHHHHHhhhhhc
Confidence 9999999999996
No 101
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=98.29 E-value=1.8e-06 Score=101.34 Aligned_cols=123 Identities=24% Similarity=0.340 Sum_probs=86.7
Q ss_pred CcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHHhcccCCChH
Q 008743 143 MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPA 222 (555)
Q Consensus 143 lHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~ 222 (555)
|||||+|+.++.|+++|..+..||+|.+....+-.|..+...+..+.. .+.+.. +.+++ .+...+
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~--------~~~~~~---~~~~~---~~gi~~- 65 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIAR--------GDPETI---ELYKS---LYGIPE- 65 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhc--------cchhHH---HHHHH---HcCCCH-
Confidence 799999999999999999999999999999999999988766533211 011111 11111 001111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----cccCCcHHHHHHHHHhCCCeee
Q 008743 223 FKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGVIDELSKQGLVEE 294 (555)
Q Consensus 223 ~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~e-----s~~~~~~~~v~~~L~~~g~~~~ 294 (555)
+.+.++ +++ +++++.+...+++.+++||+.+||..+ ..|...++.++..|.++|++|.
T Consensus 66 ------~~i~~f--~~~------~~~~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 66 ------EELEKF--KDP------EYIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred ------HHHHHh--cCH------HHHHHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEec
Confidence 111111 122 356788889999999999999998643 3566789999999999999996
No 102
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=3.6e-06 Score=92.24 Aligned_cols=173 Identities=14% Similarity=0.121 Sum_probs=103.6
Q ss_pred EEEeeCCccc-cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHH
Q 008743 342 IYVTDVGQQL-HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419 (555)
Q Consensus 342 I~V~g~dq~~-hf~~~~~~l-~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~ 419 (555)
+|.-|.||.. -|+...... ..-+.. |....+.| |++.++.|.|||||.||+|+++.+++-
T Consensus 569 v~LEG~DQ~rGWFQSsLLTsvA~q~kA----PYk~vivH---GFtlDE~G~KMSKSlGNVidP~~v~~G----------- 630 (937)
T KOG0433|consen 569 VYLEGVDQFRGWFQSSLLTSVAVQNKA----PYKKVIVH---GFTLDENGNKMSKSLGNVVDPTMVTDG----------- 630 (937)
T ss_pred eEEecchhcchHHHHHHHHHHHHhccC----Cchheeee---eeEecCCccchhhcccCcCCHHHHhCC-----------
Confidence 4556899865 566443221 222333 34556666 889999999999999999999988875
Q ss_pred hcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCChhhhhhcC
Q 008743 420 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTG 499 (555)
Q Consensus 420 ~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~ 499 (555)
.++.+ .+|+|++||+........++...+.-+.+... ..--+-.+..=+.+-+......-..++-
T Consensus 631 ~~k~p------------ayGaD~LR~WVA~~~~t~d~~iGp~il~qv~e-~l~K~R~T~RfllGnl~d~~~~~~~~p~-- 695 (937)
T KOG0433|consen 631 SLKQP------------AYGADGLRFWVAGSENTGESKIGPKILDQVDE-KLIKFRNTFRFLLGNLQDFDGKQVKFPL-- 695 (937)
T ss_pred cccCC------------CccccceeeeeecccccCceecCHHHHHHHHH-HHHHHHhHHHHHhhcccccCCccccccc--
Confidence 12222 18999999998855555565555544332211 0000000000001111111110000110
Q ss_pred CCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHH-HHHHHhccc
Q 008743 500 SLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYN-LSEYFTRFY 549 (555)
Q Consensus 500 ~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~-La~~fn~fY 549 (555)
..+ .--++-++.+|..+...+++.+++|+..+++.-|.. +...++.||
T Consensus 696 -~dl-~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~Y 744 (937)
T KOG0433|consen 696 -KDL-RYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFY 744 (937)
T ss_pred -hhh-hhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHH
Confidence 001 112456788999999999999999999999999887 678888888
No 103
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00019 Score=82.91 Aligned_cols=130 Identities=21% Similarity=0.262 Sum_probs=90.3
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHH
Q 008743 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (555)
++.+.-=.-|-.||.+||||+-|-||=|+|.|.....||+|.++...+-+|.+|..-+. +.++- . +..+.+
T Consensus 49 ~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~ve---k~lg~-~---k~~i~~-- 119 (933)
T COG0060 49 PKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVE---KKLGI-G---KKDIES-- 119 (933)
T ss_pred CcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHH---HHhCC-C---cchhhh--
Confidence 44555557789999999999999999999999999999999999988888887763321 11121 0 000000
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec-----ccccCCcHHHH
Q 008743 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPGV 282 (555)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~-----es~~~~~~~~v 282 (555)
+ .-.+|.+.| ++++...++..++.++||||-.||.. ...|...+-.+
T Consensus 120 ---------~-~~~efr~~C------------------r~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~ 171 (933)
T COG0060 120 ---------F-GVEEFREKC------------------REFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWA 171 (933)
T ss_pred ---------c-CHHHHHHHH------------------HHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHH
Confidence 0 011344444 44566667788899999999987732 12233456678
Q ss_pred HHHHHhCCCeee
Q 008743 283 IDELSKQGLVEE 294 (555)
Q Consensus 283 ~~~L~~~g~~~~ 294 (555)
+.+|.++|++|+
T Consensus 172 f~~~~~kGllyr 183 (933)
T COG0060 172 FKELYEKGLLYR 183 (933)
T ss_pred HHHHHHCCCeec
Confidence 899999999997
No 104
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.41 E-value=0.00097 Score=71.53 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=46.4
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHH
Q 008743 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 405 (555)
Q Consensus 335 ~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dl 405 (555)
.++++.. +.|.||..|+..-..+++.+|... + .++..-++.+.+|.|||||.||+|+|+|=
T Consensus 184 ~~~~~iq--~gG~DQ~~ni~~grdl~~r~~~~~------~--~~lt~PlL~g~dG~KMsKS~~naI~L~d~ 244 (410)
T PRK13354 184 KEDVDLQ--IGGTDQWGNILMGRDLQRKLEGEE------Q--FGLTMPLLEGADGTKMGKSAGGAIWLDPE 244 (410)
T ss_pred cCCCCEE--EecHHHHHHHHHHHHHHHHhCCCC------c--eEeccCCccCCCCCccCCCCCCceeccCC
Confidence 4566643 589999999999889999988731 1 22233467888999999999999988764
No 105
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.37 E-value=0.00082 Score=72.12 Aligned_cols=60 Identities=17% Similarity=0.085 Sum_probs=45.8
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHH
Q 008743 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 335 ~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
.++++.. ++|.||..|+..-..+++.+|..+ ..++..-++.+.+|+|||||.|+.|+|+|
T Consensus 186 ~~~~~i~--~gG~DQ~~ni~~grdla~r~~~~~--------~~~l~~plL~~~~G~KMsKS~~naI~L~d 245 (408)
T PRK05912 186 RYGCDLQ--LGGSDQWGNILSGRDLQRRYGGKP--------QFGLTMPLLTGLDGKKMGKSEGNAVWLDE 245 (408)
T ss_pred cCCCCEE--eccHHHHHHHHHHHHHHHHhCCCC--------eEEEecCCcCCCCCCcccCCCCCceeCCC
Confidence 4566644 589999999998888888888631 22333446778899999999999999986
No 106
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.26 E-value=0.0034 Score=66.39 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=43.0
Q ss_pred EEEeeCCccccHHHHHHHHHHc----CCCCCCCCCCCcEEEEEeeEEECCCCccceecc-CCccchHHHHHH
Q 008743 342 IYVTDVGQQLHFDMVFSAAKRA----GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF-SEVVRLVDLLDE 408 (555)
Q Consensus 342 I~V~g~dq~~hf~~~~~~l~~l----G~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~-G~~v~l~dll~e 408 (555)
+-.+|.||..|+.--..++..+ |+. .+...|. .++.+-+|.|||||. ++.|.|.|=-++
T Consensus 206 lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~------~P~~l~~--~~lpgL~G~KMSkS~~~s~I~L~D~p~~ 269 (368)
T PRK12285 206 LVPVGIDQDPHIRLTRDIAERLHGGYGFI------KPSSTYH--KFMPGLTGGKMSSSKPESAIYLTDDPET 269 (368)
T ss_pred EEEeccchHHHHHHHHHHHHHHhhhcCCC------CchhHhh--hcccCCCCCcCCCCCCCCeeeccCCHHH
Confidence 3358999999999888888888 874 2333443 356677889999998 678888653333
No 107
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0018 Score=71.01 Aligned_cols=134 Identities=18% Similarity=0.245 Sum_probs=96.5
Q ss_pred EeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccC--CCCCcc
Q 008743 380 GFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN--RLTNYT 457 (555)
Q Consensus 380 ~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~--~~~~~~ 457 (555)
..|+|+..||+|||||.-|+-.+..++++ +|+||+|.+++... +...+.
T Consensus 590 vnGlVLAeDG~KMSKrlkNYPdP~~iink-----------------------------YGADalRlYLInSPVvraE~Lk 640 (1070)
T KOG0434|consen 590 VNGLVLAEDGKKMSKRLKNYPDPSLIINK-----------------------------YGADALRLYLINSPVVRAENLK 640 (1070)
T ss_pred EeeeEEecccHHHhhhhhcCCCHHHHHHh-----------------------------hcchheeeeeecCccccccccc
Confidence 35999999999999999999999999988 89999999999875 457889
Q ss_pred ccccccccccC-------Ch-hHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhc
Q 008743 458 FSFDQMLNDKG-------NT-AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNL 529 (555)
Q Consensus 458 Fd~~~~~~~~~-------n~-~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~ 529 (555)
|.-+-+...-. |. .+|+|++. .+.+-. +..-... +.....+--+++++.....+..-+++-|++|
T Consensus 641 FkeeGVrevvk~v~lPW~NsyrF~~qn~~-----~~~~~~-g~~f~~~-~~~~S~NvmDrWI~a~~qslv~fv~~eM~~Y 713 (1070)
T KOG0434|consen 641 FKEEGVREVVKDVLLPWYNSYRFLVQNAA-----LLKKET-GKDFVFD-DSVTSSNVMDRWILASTQSLVGFVREEMDQY 713 (1070)
T ss_pred cchhhHHHHHHhhhhhhhHHHHHHHHHHH-----Hhcccc-CCccccc-cccccchhHHHHHHHHHHHHHHHHHHHHHhe
Confidence 98887766432 22 24555432 123321 1100000 1011112246788888999999999999999
Q ss_pred chHHHHHHHHHHHHHHhccc
Q 008743 530 LPNVVCEYLYNLSEYFTRFY 549 (555)
Q Consensus 530 ~p~~l~~yl~~La~~fn~fY 549 (555)
+...++--|..+.+.+.+||
T Consensus 714 rLytVvp~llkfiD~LTNwY 733 (1070)
T KOG0434|consen 714 RLYTVVPRLLKFIDELTNWY 733 (1070)
T ss_pred ehhhhHHHHHHHHHHhhhhh
Confidence 99998888888888888888
No 108
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.23 E-value=0.0019 Score=67.50 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=46.9
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCc--cceecc-CCccchHHHHHHH
Q 008743 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK--RLRTRF-SEVVRLVDLLDEA 409 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~--kmSkR~-G~~v~l~dll~e~ 409 (555)
+++|.+ .+|.||..|+..-..++..+|+. .+...+ ..+|.+-+|. |||||. |++|.|.|=-++.
T Consensus 167 ~~ad~v--pvG~DQ~~h~~l~Rdia~~~n~~------~p~~l~--~~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I 233 (329)
T PRK08560 167 LDVDIA--VGGMDQRKIHMLAREVLPKLGYK------KPVCIH--TPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEI 233 (329)
T ss_pred hCCCEE--EechhHHHHHHHHHHhhHhcCCC------CceEEE--cCccCCCCCCCCCCcCCCCCCeecccCCHHHH
Confidence 467766 48999999999888888888873 223333 3457666776 999999 9999887544443
No 109
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.22 E-value=0.0034 Score=65.48 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=43.1
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEe-eEEECCCCccceeccCC-ccchHH
Q 008743 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGF-GLVLGEDGKRLRTRFSE-VVRLVD 404 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~-g~v~~~~G~kmSkR~G~-~v~l~d 404 (555)
+++|.+ .+|.||..|+.--..++..+|..-...-..+...|..+ -.|.+.+|+|||||.++ .|.|.|
T Consensus 138 ~~~d~v--pvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 138 YQADLV--PVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred cCCCee--ecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 467755 48999999999888899888821000001233334222 22555667899999996 887764
No 110
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.18 E-value=0.0054 Score=65.14 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=42.4
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECC-CC-ccceeccCC-ccchHH
Q 008743 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRFSE-VVRLVD 404 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~-~G-~kmSkR~G~-~v~l~d 404 (555)
+++|.+. +|.||..|+.-...++..+|+.+ .+.+.|. .+|.+- +| +|||||.++ .|.+.|
T Consensus 209 l~adivp--vG~DQ~~~~~LaRdia~~~~~~~-----~~~~~~~--~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 209 LKADICQ--LGMDQRKVNMLAREYCDKKKIKK-----KPIILSH--HMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred cCCCEEE--eCccHHHHHHHHHHHHHHhCCCC-----Cceeecc--cccccCCCCCCCCCcCCCCCeecCCC
Confidence 4677654 89999999988778889999632 2233343 456555 45 699999977 587765
No 111
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0032 Score=67.51 Aligned_cols=41 Identities=17% Similarity=-0.023 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCeee-eecccccCCcHHHHHHHHHhCCCeee
Q 008743 254 KEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELSKQGLVEE 294 (555)
Q Consensus 254 ~~~~~~~~~Lgi~f~-~~~es~~~~~~~~v~~~L~~~g~~~~ 294 (555)
..+.+++..|||..| +..-|.|-+.+-..-..|.+.|.+|.
T Consensus 253 ~~IleDl~~LgIkpd~~TyTSDyF~~i~dycv~likeGKAYv 294 (712)
T KOG1147|consen 253 DVILEDLSLLGIKPDRVTYTSDYFDEIMDYCVKLIKEGKAYV 294 (712)
T ss_pred HHHHHHHHHhCcCcceeeechhhHHHHHHHHHHHHhcCcccc
Confidence 455668888888875 44457776666677777777787774
No 112
>PLN02486 aminoacyl-tRNA ligase
Probab=96.83 E-value=0.095 Score=55.73 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=38.1
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCC--ccceeccCC-ccchHH
Q 008743 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVD 404 (555)
Q Consensus 344 V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G--~kmSkR~G~-~v~l~d 404 (555)
=+|.||..|+.....++..+|+. .+.+.|.. ++-+-+| .|||||.+| +|.|.|
T Consensus 224 PvG~DQd~~~~ltRdia~r~~~~------kp~~~~~~--~lp~L~g~~~KMSkS~~nsaI~L~D 279 (383)
T PLN02486 224 PCAIDQDPYFRMTRDVAPRLGYY------KPALIESR--FFPALQGESGKMSASDPNSAIYVTD 279 (383)
T ss_pred ecccchHHHHHHHHHHHHHhCCC------Ccceeccc--cccCCCCCCCcCcCcCCCCeeeccC
Confidence 46999999999998999999873 23344532 2333333 599999987 688876
No 113
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.0073 Score=64.22 Aligned_cols=53 Identities=19% Similarity=0.089 Sum_probs=38.2
Q ss_pred EEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccch
Q 008743 342 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 402 (555)
Q Consensus 342 I~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l 402 (555)
+=+-|.||...+-.-...+..+|+. .....|+ -++.+.+|.||||+.|+.+.+
T Consensus 183 lq~GG~DQ~~ni~~grdl~rr~g~~------~~~~lt~--PLL~~ldG~KmgKs~~~a~~~ 235 (401)
T COG0162 183 LQLGGSDQWGNILAGRDLIRRLGQK------KVVGLTT--PLLTGLDGKKMGKSEGGAVWL 235 (401)
T ss_pred hhcCChHHHHHHHHHHHHHHHhCCC------CeEEEEe--ccccCCCCCcccccCCCceEc
Confidence 4457899977666555777888883 2344555 468889999999999985443
No 114
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.11 E-value=0.045 Score=58.22 Aligned_cols=58 Identities=12% Similarity=0.001 Sum_probs=41.5
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHH
Q 008743 337 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 337 ~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
..| +-+.|.||..|+.....+++.++... . .-+...++.+.+|.|||||.||.|++++
T Consensus 177 ~~d--i~~gG~DQ~~ni~~g~dLar~~~~~~-----~---~~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 177 NVD--LQIGGSDQWGNIRKGRDLIRRNLPSL-----G---FGLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred cCC--eeEecchhHHHHHHHHHHHHHhcCCC-----c---eeeceeeecCCCCCCccCCCCCcccCCc
Confidence 455 44689999999998888887776421 1 1122345667789999999998888764
No 115
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.033 Score=62.14 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=80.5
Q ss_pred CCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHH--HHHHHHhhCCCCCCCCcccHHHHHHHHHHHhcc
Q 008743 139 IAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGM--LIEYLFEKFPNSEDANETAIGELQEFYRRSKNR 216 (555)
Q Consensus 139 p~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~--l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~ 216 (555)
.+|.+|+||++|-|+-|.+-|++-+.|..|..+-..+=.|-.+.. +..++ ++.. . .
T Consensus 66 anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl----~~~~-----------------~-~ 123 (937)
T KOG0433|consen 66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSL----TESE-----------------G-S 123 (937)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhh----hhcc-----------------c-c
Confidence 679999999999999999999999999999887776666665542 11111 0000 0 0
Q ss_pred cCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeccccc-------CCcHHHHHHHHHhC
Q 008743 217 FDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFY-------NPYIPGVIDELSKQ 289 (555)
Q Consensus 217 ~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~es~~-------~~~~~~v~~~L~~~ 289 (555)
-..-+++.. =+.+++..++...+.+.|+||-=||. .-| .-.--+++..|.++
T Consensus 124 -~s~leiR~~------------------Ar~fA~~AIk~Q~e~F~r~gv~aDW~--n~Y~T~~~~ye~aQL~iF~~lyek 182 (937)
T KOG0433|consen 124 -RTPLEIRAK------------------ARIFADEAIKKQMEAFRRWGVTADWE--NPYVTKSPSYEAAQLDIFAKLYEK 182 (937)
T ss_pred -CCcHHHHHH------------------HHHHHHHHHHHHHHHHHHheeeccCC--CceeecChHHHHHHHHHHHHHHhc
Confidence 011122222 24466777788899999999998884 323 11234688899999
Q ss_pred CCeeeecceEEE
Q 008743 290 GLVEESQGARVI 301 (555)
Q Consensus 290 g~~~~~dGa~~~ 301 (555)
|++|++-.-+++
T Consensus 183 gLvyR~~KPVyW 194 (937)
T KOG0433|consen 183 GLVYRSFKPVYW 194 (937)
T ss_pred cceeccCCccee
Confidence 999985544433
No 116
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.75 E-value=0.029 Score=62.03 Aligned_cols=130 Identities=23% Similarity=0.283 Sum_probs=82.5
Q ss_pred eEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHH
Q 008743 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (555)
Q Consensus 129 ~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (555)
+....=.-|=.||-.|-||+-...|-|++-|..-..||.|.|.+..+-.|.++.--+.. ..+- ...+ +
T Consensus 39 ~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDK---kLgI---~g~~------d 106 (1070)
T KOG0434|consen 39 KFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDK---KLGI---TGRD------D 106 (1070)
T ss_pred ceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeech---hcCC---CCHH------H
Confidence 34454556778999999999999999999999999999999999998888766421100 0000 0000 1
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCC--eeeeecccccC---CcHHHHH
Q 008743 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRV--DLEEKGESFYN---PYIPGVI 283 (555)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi--~f~~~~es~~~---~~~~~v~ 283 (555)
+.+ | |-...-..++.++-.+..+.+.+..|||- .|+--...+|- +.+=.++
T Consensus 107 V~k----------------------m--GI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvF 162 (1070)
T KOG0434|consen 107 VMK----------------------M--GIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVF 162 (1070)
T ss_pred HHH----------------------H--hHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHH
Confidence 111 0 11111223344555666677888889984 45211123332 2345789
Q ss_pred HHHHhCCCeee
Q 008743 284 DELSKQGLVEE 294 (555)
Q Consensus 284 ~~L~~~g~~~~ 294 (555)
++|-++|++|.
T Consensus 163 keL~~kglVYR 173 (1070)
T KOG0434|consen 163 KELHEKGLVYR 173 (1070)
T ss_pred HHHHhcCceec
Confidence 99999999996
No 117
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.67 E-value=0.068 Score=59.18 Aligned_cols=122 Identities=13% Similarity=0.127 Sum_probs=66.9
Q ss_pred cceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCC-CCCccccccccccccCC
Q 008743 391 RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLNDKGN 469 (555)
Q Consensus 391 kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~~~~~Fd~~~~~~~~~n 469 (555)
|||||++|.|.+.|++++ +|+|++|.+.|-..| ..++..|-..+
T Consensus 617 KMSKSK~NGVdP~~~v~~-----------------------------yG~D~tRl~ilf~ap~~~~~nW~es~i------ 661 (876)
T KOG0435|consen 617 KMSKSKHNGVDPADVVLE-----------------------------YGVDTTRLYILFAAPPRDPINWNESAI------ 661 (876)
T ss_pred HhhhcccCCCCHHHHHHH-----------------------------hCchHHHHHHHhhCCcccccccccccc------
Confidence 899999999999999998 799999999998865 56655442222
Q ss_pred hhH--HHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcc-hHHHHHHHHHHHHHHh
Q 008743 470 TAV--YLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLL-PNVVCEYLYNLSEYFT 546 (555)
Q Consensus 470 ~~~--ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~-p~~l~~yl~~La~~fn 546 (555)
.|. ++|-..+=...|++....+.+. .........+.+.++|......|..-+..+++... .+.++.-++.|..++.
T Consensus 662 ~Gi~rwl~riw~l~~~~~~ar~~g~~~-d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~ 740 (876)
T KOG0435|consen 662 PGIKRWLQRIWALVSQILQARDDGKAK-DLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALK 740 (876)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCcc-cccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 232 5554333333344322111100 00001111123334666666666555555554322 4455555555555444
Q ss_pred cc
Q 008743 547 RF 548 (555)
Q Consensus 547 ~f 548 (555)
+-
T Consensus 741 ~a 742 (876)
T KOG0435|consen 741 KA 742 (876)
T ss_pred Hh
Confidence 43
No 118
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=95.21 E-value=0.09 Score=45.11 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccc
Q 008743 474 LLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSN 551 (555)
Q Consensus 474 lqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~ 551 (555)
.++.+.|+++.+.+...+.. +.... ....+.+.+|+..+..+++.+.+++++++++.++..+++++...|.|++.
T Consensus 10 ~~n~~~r~~~~~~~~~~~~~--~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~~ 84 (117)
T cd07375 10 FLNRLYRLLSFFRKALGGTQ--PKWDN-ELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLDE 84 (117)
T ss_pred HHHHHHHHHHHHHHhcCCCC--CCcCh-hhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHHH
Confidence 56778899998766543211 10000 01245578899999999999999999999999999999999999998864
No 119
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=95.16 E-value=0.13 Score=58.58 Aligned_cols=65 Identities=12% Similarity=0.061 Sum_probs=43.2
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCC-C-ccceecc-CCccchHHHHHHH
Q 008743 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-G-KRLRTRF-SEVVRLVDLLDEA 409 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~-G-~kmSkR~-G~~v~l~dll~e~ 409 (555)
+++|.+. +|.||..|+.-...++..+|..+ .+.+.|. .++-+-+ | .|||||. +++|.+.|=-++.
T Consensus 174 l~adivp--vG~DQ~qh~eLaRdia~~~g~~~-----kpvil~~--~~LpGL~gg~~KMSKS~p~naI~L~Dspe~I 241 (682)
T PTZ00348 174 LKADICQ--LGLDQRKVNMLAREYCDLIGRKL-----KPVILSH--HMLAGLKQGQAKMSKSDPDSAIFMEDTEEDV 241 (682)
T ss_pred cCCCEEE--eCccHHHHHHHHHHHHHHhCCCC-----Cceeccc--ccCcCCCCCCCcCCCCCCCCeecccCCHHHH
Confidence 4677654 89999999987777888888532 2233343 3354443 3 5999999 6899887643443
No 120
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.00 E-value=0.13 Score=57.55 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=97.7
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHh---hCCCCCCCCcccH
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFE---KFPNSEDANETAI 203 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~---~~~~~~~~~~~~i 203 (555)
..|..|-|.-|..+|.||+||+-|.-=-|+-+-.-|..|++|..-+..-=.|..|.-.+..+.. .|+.....+.+..
T Consensus 43 ~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~e 122 (1080)
T KOG0437|consen 43 KPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPEEEE 122 (1080)
T ss_pred cCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCchhhh
Confidence 5679999999999999999999999999999999999999999999998999988765554432 2221111111111
Q ss_pred HHHHHHHHHHhcc-cCCChH-----HHHHHH--------HHHHHHccCCHHHH-----HHHHHHHHHHHHHHHHHHHHcC
Q 008743 204 GELQEFYRRSKNR-FDSDPA-----FKERAQ--------QAVVRLQSGEPKYH-----EAWAQICEISRKEFDKVYKRLR 264 (555)
Q Consensus 204 ~~l~~~y~~~~~~-~~~~~~-----~~~~~~--------~~~~~le~gd~~~~-----~~w~~~~~~~~~~~~~~~~~Lg 264 (555)
.++ -.+.+.. .-.++. -+..|+ +.+..|-=.|+|.. +-| ...+=-.-.++++++|
T Consensus 123 eEv---~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~W---L~yFPpLc~~dlk~~g 196 (1080)
T KOG0437|consen 123 EEV---EEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHW---LYYFPPLCERDLKRFG 196 (1080)
T ss_pred hhh---hhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHH---HHhCChHHHHHHHHhC
Confidence 111 0000000 000001 111122 33333322233321 122 2222233456899999
Q ss_pred Ceeeeecc-------cccCCcHHHHHHHHHhCCCee
Q 008743 265 VDLEEKGE-------SFYNPYIPGVIDELSKQGLVE 293 (555)
Q Consensus 265 i~f~~~~e-------s~~~~~~~~v~~~L~~~g~~~ 293 (555)
...||... .+|...+..-+..|++.|.+.
T Consensus 197 l~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~ 232 (1080)
T KOG0437|consen 197 LGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIK 232 (1080)
T ss_pred CCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcc
Confidence 99998632 245567889999999999765
No 121
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.66 E-value=0.046 Score=55.57 Aligned_cols=64 Identities=16% Similarity=0.040 Sum_probs=47.2
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcC-CCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHH
Q 008743 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAG-WLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 408 (555)
Q Consensus 335 ~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG-~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e 408 (555)
+.+++.+ .+|.||..|+..-..++..++ +. .+...+. -++.+.+|.|||||.|+.+.+..+.+.
T Consensus 151 ~~~~~~v--p~G~DQ~~~i~l~rdla~r~n~~~------~p~~l~~--p~l~~l~G~KMSKS~~~~i~l~~~~ds 215 (273)
T cd00395 151 TEGCDIQ--PGGSDQWGNITLGRELARRFNGFT------IAEGLTI--PLVTKLDGPKFGKSESGPKWLDTEKTS 215 (273)
T ss_pred ccCCcEE--EecHHHHHHHHHHHHHHHHhCCCC------CCeEEee--ccccCCCCCcCCCCCCCCccccccCCC
Confidence 3556655 599999999999888888885 32 1223343 468888999999999999887666553
No 122
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.59 E-value=0.028 Score=57.01 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=45.0
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHH
Q 008743 337 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLD 407 (555)
Q Consensus 337 ~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~ 407 (555)
+.|.+ ++|.||..|+..-..+++.+|+.. ..++...++.+.+|+|||||.|+.++ ..+.|
T Consensus 151 ~~~l~--~~G~DQ~~~i~~~rd~a~r~~~~~--------~~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~d 210 (269)
T cd00805 151 DVDLQ--LGGSDQRGNITLGRDLIRKLGYKK--------VVGLTTPLLTGLDGGKMSKSEGNAIW-DPVLD 210 (269)
T ss_pred hCCee--EecHHHHHHHHHHHHHHHHhCCCC--------cEEEeeccccCCCCCcccCCCCCccc-ccCCC
Confidence 34544 699999999999989999998831 23344467888899999999999985 44433
No 123
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.02 E-value=0.15 Score=52.43 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=43.3
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcC------CCCCCCCCCCcEEEEEeeEEECCCC-ccceeccCC-ccchHHHHH
Q 008743 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAG------WLSADDSTYPKASHVGFGLVLGEDG-KRLRTRFSE-VVRLVDLLD 407 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG------~~~~~~~~~~~~~Hv~~g~v~~~~G-~kmSkR~G~-~v~l~dll~ 407 (555)
++.+.| =||.||..|+..-..+++.++ +. .+...+..-..|-+-+| +|||||.+| +|.|.|=-+
T Consensus 144 ~~a~~V--PVG~DQ~qHleLtRDiA~rfn~~y~~~f~------~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D~~~ 215 (314)
T COG0180 144 YQATLV--PVGEDQDQHLELTRDIARRFNHLYGEVFP------LPEALISKVARLPGLDGPGKMSKSDPNSAIFLLDDPK 215 (314)
T ss_pred ccCCee--ccCCCchHHHHHHHHHHHHHHhhcCCccC------CccccccCCCcccCCCCCCcccccCCCCeeeccCCHH
Confidence 455554 489999999999889998887 32 12222221135555566 799999999 887764433
Q ss_pred H
Q 008743 408 E 408 (555)
Q Consensus 408 e 408 (555)
+
T Consensus 216 ~ 216 (314)
T COG0180 216 T 216 (314)
T ss_pred H
Confidence 3
No 124
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.65 E-value=0.18 Score=56.46 Aligned_cols=52 Identities=8% Similarity=0.188 Sum_probs=39.3
Q ss_pred eEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccC-CCCCccccc
Q 008743 382 GLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSF 460 (555)
Q Consensus 382 g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~ 460 (555)
|.+. -+++|||||.||+.+|++-+++ +|+++.|+.+.... ...|.+|..
T Consensus 702 GHLm-LNsEKMSKSTGNfmTL~qaieK-----------------------------Fgad~tRlalAdaGD~veDANF~e 751 (1080)
T KOG0437|consen 702 GHLM-LNSEKMSKSTGNFMTLEQAIEK-----------------------------FGADGTRLALADAGDGVEDANFVE 751 (1080)
T ss_pred ceEE-ecchhhccccCCeeeHHHHHHH-----------------------------hCccceeeeeecccCCcccchhHH
Confidence 5444 2467899999999999998888 89999999876553 456777765
Q ss_pred ccc
Q 008743 461 DQM 463 (555)
Q Consensus 461 ~~~ 463 (555)
..+
T Consensus 752 a~A 754 (1080)
T KOG0437|consen 752 ANA 754 (1080)
T ss_pred hcc
Confidence 543
No 125
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=93.32 E-value=0.099 Score=54.65 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=42.4
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEE---EEEeeEEECCCCccceeccCCccchHH
Q 008743 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKAS---HVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~---Hv~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
+++|.+ .+|.||..|+.--..++..++..-...-..+... |. -++-+-+|+|||||.++.|.|.|
T Consensus 148 ~~~d~V--pvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~--~~l~gLdg~KMSKS~~n~I~L~D 215 (332)
T PRK12556 148 FQATHV--PVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEG--AILPGLDGRKMSKSYGNVIPLFA 215 (332)
T ss_pred ccCCEE--EeccccHHHHHHHHHHHHHHHHhccccCCCceecccccc--ccccCCCCCCCCCCCCCcccccC
Confidence 466766 4899999999988888887762100000012222 32 34666788999999999887753
No 126
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.23 E-value=0.094 Score=56.23 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=43.3
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCC--CCCCCCcEEEEEeeEEECCCCccceeccCCccchHH
Q 008743 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSA--DDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~--~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
+++|.+- +|.||..|...-..++..++..-+ ..+.+....+....+|.+-+|+|||||.||.|.|.|
T Consensus 147 y~ad~VP--VG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~D 215 (431)
T PRK12284 147 FNAHKVP--VGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYDNTIPLFA 215 (431)
T ss_pred cCCCEEE--EcchhHHHHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCCCEeeecC
Confidence 4677764 899999999988888888763210 000111122111235666788999999999997764
No 127
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=93.19 E-value=0.074 Score=54.57 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=46.7
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCc-cceeccCC-ccchHHHHHH
Q 008743 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSE-VVRLVDLLDE 408 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~-kmSkR~G~-~v~l~dll~e 408 (555)
.++|.+ ++|.||..|+.....++..+|... . -..+...+ ..++.+.+|. |||||.+| .|.|.|=-++
T Consensus 148 l~~~~~--~~G~DQ~~~~~l~rd~a~k~~~~~-~-~~~p~~l~--~~~l~~l~G~~KMSKS~~ns~I~L~d~~~~ 216 (292)
T PF00579_consen 148 LKADLV--PGGIDQRGHIELARDLARKFNYKE-I-FPKPAGLT--SPLLPGLDGQKKMSKSDPNSAIFLDDSPEE 216 (292)
T ss_dssp TTHSEE--EEEGGGHHHHHHHHHHHHHHTHHS-T-SSS-EEEE--ETCBBSTTSSSBTTTTTTGGS-BTTTTHHH
T ss_pred eccccc--cccchHHHHHHHHHHHHhhhcccc-c-ccCchhee--eccccccCCccccCccCCccEEEEeccchh
Confidence 345633 589999999999989999998730 0 01233333 3568888898 99999999 8888765554
No 128
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=92.49 E-value=0.16 Score=51.95 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=42.8
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCC--ccceeccC-CccchHH
Q 008743 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFS-EVVRLVD 404 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G--~kmSkR~G-~~v~l~d 404 (555)
++++.+ .+|.||..|+.....++..++..-+..-..+...|....+|.+-+| +|||||.| +.|.|.|
T Consensus 136 ~~~~~v--pvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 136 YKACLV--PVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred ccCCEE--eeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 355555 4699999999999899999882100000123444431234554554 59999999 9998875
No 129
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=92.02 E-value=0.87 Score=39.91 Aligned_cols=74 Identities=14% Similarity=0.020 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccc
Q 008743 474 LLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 552 (555)
Q Consensus 474 lqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~ 552 (555)
+++...|+.++..+...+.. +. ... .++.+.+++..+.+....+.+++++++++.++.-+++++...|+|.+..
T Consensus 9 ~gnll~r~~~~~~~~~~~~~--~~--~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~n~y~~~~ 82 (129)
T cd07957 9 LGNLVNRTLNMASKYFGGVV--PE--FGG-LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYIDET 82 (129)
T ss_pred HhhHHHHHHHHHHHHcCCcC--CC--CCC-CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhccC
Confidence 34455798888877644321 11 111 1345678999999999999999999999999999999999999998643
No 130
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=90.77 E-value=0.27 Score=51.53 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=44.4
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEe-eEEECCCCc--cceeccC---CccchHHH
Q 008743 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGF-GLVLGEDGK--RLRTRFS---EVVRLVDL 405 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~-g~v~~~~G~--kmSkR~G---~~v~l~dl 405 (555)
+++|.+. +|.||..|+..-..++..++..-...-..+...|..+ .+|.+-+|. |||||.+ +.|.+.|=
T Consensus 137 ~~~divp--vG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~ 210 (333)
T PRK00927 137 YKADLVP--VGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDD 210 (333)
T ss_pred cCCCEEe--eccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCC
Confidence 4677664 9999999999888888888741000001233334332 346556665 9999999 89988763
No 131
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=89.87 E-value=2.1 Score=36.74 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccc
Q 008743 476 YAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 552 (555)
Q Consensus 476 Ya~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~ 552 (555)
.-..|+.++.++...+. .+...+..+ .+.++.++..+.+..+.+.+++++++++.++.-+++++..+|+|++..
T Consensus 11 n~l~R~~~~~~~~~~~~--~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~~~ 84 (117)
T cd07958 11 RFLNRVWRLVTELAEAL--AAPAAAAEL-SEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKKKD 84 (117)
T ss_pred HHHHHHHHHHHHHHhhc--ccccccccc-chhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhccc
Confidence 34468888887753221 111000112 345678999999999999999999999999999999999999998753
No 132
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=88.56 E-value=0.42 Score=50.02 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=41.8
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCC--CCc--EEEEEeeEEECCCC-ccceeccCCccchHHH
Q 008743 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST--YPK--ASHVGFGLVLGEDG-KRLRTRFSEVVRLVDL 405 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~--~~~--~~Hv~~g~v~~~~G-~kmSkR~G~~v~l~dl 405 (555)
+++|.+ .+|.||..|+.-...++..+|..-+. +. .+. ..|. .+|.+-+| .|||||.++.|.|.|=
T Consensus 141 ~~~d~v--pvG~DQ~~h~~laRdiA~~~n~~~~~-~~~~~p~~~~~~~--~~i~~L~g~~KMSKS~~~~I~L~D~ 210 (333)
T PRK12282 141 FKATLV--PVGDDQLPMIEQTREIVRRFNSLYGT-DVLVEPEALLPEA--GRLPGLDGKAKMSKSLGNAIYLSDD 210 (333)
T ss_pred hCCCEE--EeccccHHHHHHHHHHHHHHhhhcCC-ccccCchhcccCC--CcccCCCCCCcCCCCCCCeeeeeCC
Confidence 466766 48999999999988999888831000 00 011 1121 24544455 6999999999987653
No 133
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=87.00 E-value=3.1 Score=35.76 Aligned_cols=70 Identities=14% Similarity=0.001 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccccc
Q 008743 477 AHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYL-YNLSEYFTRFYSNC 552 (555)
Q Consensus 477 a~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl-~~La~~fn~fY~~~ 552 (555)
-..|+.++.++...+. .+. ..+ ++.++.++..+.+....+.+++++++++.++..+ +++....|.|.+.+
T Consensus 12 ~l~R~~~~~~~~~~~~--~~~---~~~-~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~~~Y~~~~ 82 (117)
T cd07959 12 RLERFYELAEELIETE--GEL---EEL-TFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRERG 82 (117)
T ss_pred HHHHHHHHHHHHHhcc--CCc---ccc-chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3468888887743221 111 112 4567889999999999999999999999999997 99999888776643
No 134
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=86.69 E-value=3.4 Score=47.36 Aligned_cols=83 Identities=22% Similarity=0.239 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccc
Q 008743 470 TAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFY 549 (555)
Q Consensus 470 ~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY 549 (555)
...-+.-++.|+.+|++|....... ..++..+.+++|++|...+...-..+..+....+...+...|.+|....+.||
T Consensus 567 ~~~~l~~~~kRv~NIl~k~~~~~~~--~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FF 644 (682)
T PRK01233 567 EFKALAAANKRVSNILKKAEGKVSG--EVDPALFEEPAEKALYAALEELKPKVEPALAAGDYQAALEALAALRPPVDAFF 644 (682)
T ss_pred hHHHHHHHHHHHHHHHhccccccCC--ccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhHHHHHh
Confidence 3345667899999999987532110 12334567899999999999988888888888899999999999999999999
Q ss_pred ccccC
Q 008743 550 SNCQV 554 (555)
Q Consensus 550 ~~~~V 554 (555)
++.-|
T Consensus 645 D~VmV 649 (682)
T PRK01233 645 DNVMV 649 (682)
T ss_pred CCCee
Confidence 98655
No 135
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=86.58 E-value=0.61 Score=49.67 Aligned_cols=37 Identities=22% Similarity=0.454 Sum_probs=25.0
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHH-CCCeEEEEeccCCc
Q 008743 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~-~G~~V~~~~yi~D~ 177 (555)
+++--|||.+|+||.-+++ .++.+. .|+++ -+.|-||
T Consensus 6 ~sGiqPSG~~HLGnylG~i-----k~wv~lq~~~~~--~~~IADl 43 (398)
T PRK12283 6 LSGMRPTGRLHLGHYHGVL-----KNWVKLQHEYEC--FFFVADW 43 (398)
T ss_pred EEEeCCCCcchHHHHHHHH-----HHHHHHhcCCcE--EEEeecH
Confidence 7888999999999976543 344442 36654 3566665
No 136
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=83.72 E-value=6.5 Score=45.17 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccc
Q 008743 470 TAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFY 549 (555)
Q Consensus 470 ~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY 549 (555)
...-+.-++.|+.+|++|.....+. ..+...+.+++|+.|...+..+-..+...+..-+...+...|.+|....+.||
T Consensus 577 ~~~~l~~a~kRv~NIl~k~~~~~~~--~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FF 654 (691)
T TIGR00211 577 KAEALAAANKRVANILKKGNPVLSS--EIQANLFKEPKEKALFEAVLAIKMNAQESFESGDYETALEALAELRAPVDEFF 654 (691)
T ss_pred hHHHHHHHHHHHHHHHhcccccccC--ccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhhhHHHHHh
Confidence 3445667899999999997532110 12334567899999999999887777777777788899999999999999999
Q ss_pred ccccC
Q 008743 550 SNCQV 554 (555)
Q Consensus 550 ~~~~V 554 (555)
++.-|
T Consensus 655 D~VmV 659 (691)
T TIGR00211 655 DSVMV 659 (691)
T ss_pred CCCEe
Confidence 98755
No 137
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.62 E-value=2.3 Score=46.92 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=47.3
Q ss_pred CceEEEEecCCCCCCCCcccchhhhh----------------------------HHHHHHHHHHHCCCeEEEEeccCCch
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRSTI----------------------------IGDSLARMLEFSNVEVLRRNHVGDWG 178 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~i----------------------------iGd~laril~~~G~~V~~~~yi~D~G 178 (555)
|++| +----|-|+|-|||||+...- ..++|..+-+++||+-.++.|.-|.=
T Consensus 246 GGkV-~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~kvTysSDyF 324 (764)
T KOG1148|consen 246 GGKV-VTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYKVTYSSDYF 324 (764)
T ss_pred CCee-EEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCceeeecchhHH
Confidence 4555 446679999999999987433 35789999999999999999999987
Q ss_pred hHHHHHHH
Q 008743 179 TQFGMLIE 186 (555)
Q Consensus 179 ~Q~~~l~~ 186 (555)
-|+-.++.
T Consensus 325 dqLy~~av 332 (764)
T KOG1148|consen 325 DQLYELAV 332 (764)
T ss_pred HHHHHHHH
Confidence 77665553
No 138
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=75.57 E-value=15 Score=41.78 Aligned_cols=82 Identities=23% Similarity=0.244 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccc
Q 008743 471 AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYS 550 (555)
Q Consensus 471 ~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~ 550 (555)
+--+--++.|+.+|+.|.....+. ..++..+.+++|+.|...+..+...+..+...-+...+...|..|..-...||+
T Consensus 577 ~~~l~~a~kRv~nIl~k~~~~~~~--~v~~~Lf~~~~E~~L~~a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd 654 (691)
T COG0751 577 AKALAAANKRVSNILAKAEKKLSG--TVDPSLFEEDAEKALFEALQALKPKVAEALAEKDYQDALAALAELRPPIDEFFD 654 (691)
T ss_pred hHHHHHHHHHHHHHHHhcccccCC--ccChHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHhc
Confidence 333446889999999987642211 123345678999999999999999999999999999999999999999999998
Q ss_pred cccC
Q 008743 551 NCQV 554 (555)
Q Consensus 551 ~~~V 554 (555)
+.-|
T Consensus 655 ~VmV 658 (691)
T COG0751 655 NVMV 658 (691)
T ss_pred Ccee
Confidence 8655
No 139
>PLN02886 aminoacyl-tRNA ligase
Probab=74.32 E-value=4 Score=43.54 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=22.5
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCC
Q 008743 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGW 365 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~ 365 (555)
+++|.+. +|.||..|+.....++..++.
T Consensus 183 ~~a~~VP--VG~DQ~qH~eLtRdiA~rfN~ 210 (389)
T PLN02886 183 YQADLVP--VGEDQKQHLELTRDIAERVNN 210 (389)
T ss_pred cCCCeEE--EccchHHHHHHHHHHHHHHhh
Confidence 4677664 899999999988888887764
No 140
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=72.20 E-value=23 Score=42.34 Aligned_cols=78 Identities=18% Similarity=0.105 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccc
Q 008743 470 TAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFY 549 (555)
Q Consensus 470 ~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY 549 (555)
...-+.-++.|+..|++|.... . .+...+.+++|++|...+......+... .-+...+...|.+|....+.||
T Consensus 892 ~~~~l~~a~kRv~NIl~k~~~~--~---vd~~Lf~~~~E~~L~~a~~~~~~~~~~~--~~dy~~al~~La~L~~~Id~FF 964 (1000)
T PRK14908 892 IFAEIAAALNRLKRILASLSFS--V---TDASLLLEPAELNLKQALDAFREELTEL--PIDLKDYVAAAAELPQAVNTFF 964 (1000)
T ss_pred hHHHHHHHHHHHHHHHhhcCCC--c---cChhhcCCHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHhhhhHHHHHh
Confidence 3445667999999999997532 1 2334567899999999998886666655 3367778899999999999999
Q ss_pred ccccC
Q 008743 550 SNCQV 554 (555)
Q Consensus 550 ~~~~V 554 (555)
++.-|
T Consensus 965 D~VmV 969 (1000)
T PRK14908 965 DEVLV 969 (1000)
T ss_pred CCCEe
Confidence 98655
No 141
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=68.84 E-value=3.8 Score=41.97 Aligned_cols=44 Identities=20% Similarity=0.377 Sum_probs=29.8
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008743 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
+++..| |++--|||+||+||+=... .+.++.+ .|++|.. -|+||
T Consensus 3 ~~~~~~-y~G~~PTg~lHlG~l~~~~---~~~~lq~-~g~~~~i--~iaD~ 46 (292)
T PF00579_consen 3 NKPFRV-YTGIDPTGDLHLGHLVPIM---KLIWLQK-AGFKVII--LIADL 46 (292)
T ss_dssp HSSEEE-EEEEESSSS-BHHHHHHHH---HHHHHHH-TTSEEEE--EEEHH
T ss_pred CCCcEE-EEeECCCCcccchHHHHHH---HHHHHHh-cCCccce--Eecch
Confidence 345566 9999999999999876553 3444444 8888775 45664
No 142
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=68.72 E-value=4.3 Score=41.20 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=28.8
Q ss_pred ecCCCCCC-CCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCch
Q 008743 134 FSSPNIAK-EMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG 178 (555)
Q Consensus 134 ~~SpNp~k-plHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G 178 (555)
|++--||| .||+||+-.+ . .+.++.+ +|++| ...|+||=
T Consensus 4 y~G~~PTg~~lHLG~~~~~-~--~~~~lq~-~g~~~--~ilI~D~~ 43 (269)
T cd00805 4 YIGFDPTAPSLHLGHLVPL-M--KLRDFQQ-AGHEV--IVLIGDAT 43 (269)
T ss_pred EEeeCCCCCcccHHHHHHH-H--HHHHHHH-CCCeE--EEEECCCe
Confidence 78889999 8999997743 2 5666666 59886 45677763
No 143
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=66.40 E-value=13 Score=33.09 Aligned_cols=48 Identities=19% Similarity=0.139 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHH--HHhcccccc
Q 008743 505 HADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSE--YFTRFYSNC 552 (555)
Q Consensus 505 ~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~--~fn~fY~~~ 552 (555)
++.+..++..+..+++.+..++++++.+.++..+++++. ..|.|.+.+
T Consensus 41 ~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~~~N~Yi~~~ 90 (135)
T cd07962 41 SLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWNDFCDWYLELV 90 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 355678999999999999999999999999999999986 789888754
No 144
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=61.12 E-value=7.2 Score=39.81 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=27.6
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008743 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
|++--|||.||+||+-.++.- ...|..+|+++.. .|.|+
T Consensus 3 ~tG~~PTG~lHLG~~~~al~~---~~~lQ~ag~~~~~--~IaD~ 41 (280)
T cd00806 3 LSGIQPSGSLHLGHYLGAFRF---WVWLQEAGYELFF--FIADL 41 (280)
T ss_pred EEeeCCCchhhHHHHHHHHHH---HHHHHhCCCCEEE--Eecch
Confidence 678889999999998775542 3344555887654 47775
No 145
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=54.58 E-value=11 Score=38.19 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=25.8
Q ss_pred ecCCCCCC-CCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008743 134 FSSPNIAK-EMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 134 ~~SpNp~k-plHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
|++--||| .||+||+=. =...+.|..+|+++.. -|+|+
T Consensus 3 y~G~~PTg~~lHlGh~~~----l~~~~~lq~~g~~~~~--~I~d~ 41 (273)
T cd00395 3 YCGIDPTADSLHIGHLIG----LLTFRRFQHAGHRPIF--LIGGQ 41 (273)
T ss_pred EEeEcCCCCCccHHHHHH----HHHHHHHHHCCCCEEE--EEecC
Confidence 67888999 699999544 2233444557988744 46665
No 146
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=49.89 E-value=37 Score=31.76 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHH-HH-hccccc
Q 008743 505 HADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSE-YF-TRFYSN 551 (555)
Q Consensus 505 ~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~-~f-n~fY~~ 551 (555)
.+.++.++..+..+...+.+++++++++.++.-+++++. .+ |.|++.
T Consensus 43 ~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~~~~l~n~Yi~~ 91 (180)
T cd07960 43 LELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAFYLDI 91 (180)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455678999999999999999999999999999999985 35 666553
No 147
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=49.40 E-value=37 Score=31.90 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccc
Q 008743 505 HADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFY 549 (555)
Q Consensus 505 ~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY 549 (555)
.+.++.++.++.+.-..+.+++++++++.++..++++...+.++|
T Consensus 46 ~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~~f~~~~~~~Y 90 (183)
T cd07961 46 NVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFIDELTNWY 90 (183)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH
Confidence 456789999999999999999999999999999999988776766
No 148
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.26 E-value=37 Score=36.04 Aligned_cols=57 Identities=12% Similarity=0.023 Sum_probs=37.9
Q ss_pred eEEEEeeCCccccHHHHHHHHHH-cCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchH
Q 008743 340 WIIYVTDVGQQLHFDMVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (555)
Q Consensus 340 ~iI~V~g~dq~~hf~~~~~~l~~-lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~ 403 (555)
.-+-+-|.||-+|...-...... ++.. ....-+.+-+++..+|.|+-||.||+|+|+
T Consensus 228 ~~~QlGGsDQwGNitaG~dlI~ki~~~~-------~~vfGlT~PLlTsstG~KlGKSaGnAvWLd 285 (467)
T KOG2623|consen 228 CRFQLGGSDQWGNITAGTDLIRKIMPIQ-------AFVFGLTFPLLTSSTGAKLGKSAGNAVWLD 285 (467)
T ss_pred eeEEecccccccccchHHHHHHHhcccc-------cceeeeeeeeEecCcchhhccCCCceEEec
Confidence 33556899998887654444432 2220 122333455788889999999999999876
No 149
>PLN02886 aminoacyl-tRNA ligase
Probab=44.90 E-value=14 Score=39.57 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=27.0
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008743 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
|++--|||.+|+||.-+++ .-...+.+ ||++ .+.|-||
T Consensus 50 ~sGiqPSG~lHLGnylGai--~~~v~lQ~--~~~~--~~~IADl 87 (389)
T PLN02886 50 VSGVQPTGSIHLGNYLGAI--KNWVALQE--TYDT--FFCVVDL 87 (389)
T ss_pred EEEECCCCccHHHHHHHHH--HHHHHHhc--cCCE--EEEEecH
Confidence 8999999999999966555 33334433 7776 3667775
No 150
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=43.63 E-value=21 Score=37.40 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=26.2
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCch
Q 008743 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG 178 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G 178 (555)
|++--|||++|+||.-.++. -.+-|...|. | ...|.||=
T Consensus 6 ~sG~~PTG~~HLGn~l~~~~---~~~~lQ~~~~-~--~i~IaD~h 44 (333)
T PRK12282 6 LTGDRPTGKLHLGHYVGSLK---NRVALQNEHE-Q--FVLIADQQ 44 (333)
T ss_pred EEeeCCCCcchHHHHHHHHH---HHHHHHhCCC-E--EEEEccch
Confidence 78999999999999544332 2224555664 4 56678864
No 151
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.49 E-value=69 Score=25.85 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=44.3
Q ss_pred hHhHHHHHHHHHHHHHHhc-CCCCCCCccccc--c--cC-C-CCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhhC
Q 008743 8 TGNVKRELEKVFDLALKAT-VPNETDVRPLIA--A--CT-A-KFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNL 80 (555)
Q Consensus 8 ~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~--~--~~-~-~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l 80 (555)
||.++++|+..|..++..+ +|-.. ...++. | |+ + +-|+.+.. |+.++|.+-...--.+++.++|..|+++.
T Consensus 1 ~m~v~~e~~~qiv~~~k~a~fPInn-~~eL~~ALP~G~dttc~~G~~e~t-A~E~~kLlT~~DFPfk~a~~vad~iv~~~ 78 (80)
T COG4746 1 MMTVREEIREQIVEALKGADFPINN-PEELVAALPSGPDTTCESGGVEVT-AAEAGKLLTDADFPFKSAEQVADTIVNKA 78 (80)
T ss_pred CccHHHHHHHHHHHHHccCCCCCCC-HHHHHHhccCCCCCCccCCCeeee-HHHHHhhccccCCCCCCHHHHHHHHHHhc
Confidence 5678888888888887643 22111 111221 2 22 1 57787765 67888776533334489999999998775
No 152
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=40.95 E-value=4.7e+02 Score=27.83 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=72.9
Q ss_pred hHHHHHHHhhCCCCCCceeeEEecCCeEEEEeCHHHHHHHHHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCcccchh
Q 008743 70 QPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLR 149 (555)
Q Consensus 70 ~~iA~~i~~~l~~~~~i~~v~v~gpGfiN~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR 149 (555)
-.++++|+.+-.. + + +-.++-| -......+++.++-+..........-.+.|+|--+|-.| -.-+.+
T Consensus 171 T~L~~~Iak~~~~-d-v--vVyv~iG-----ERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p----~~~R~~ 237 (369)
T cd01134 171 TVIQQSLSKYSNS-D-I--VIYVGCG-----ERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMP----VAAREA 237 (369)
T ss_pred HHHHHHHHhCCCC-C-E--EEEEEeC-----CChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCC----HHHHHH
Confidence 4667777766322 2 1 2223323 444555665555432221101111234778886666544 445788
Q ss_pred hhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHH---HhhCCCCCCCCcccHHHHHHHHHHHhc
Q 008743 150 STIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYL---FEKFPNSEDANETAIGELQEFYRRSKN 215 (555)
Q Consensus 150 ~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~---~~~~~~~~~~~~~~i~~l~~~y~~~~~ 215 (555)
+.-.|=++|..++.+|++|... .+|. +.++.-.+-+ ..+.|..+.|+..--..|.++|.++..
T Consensus 238 s~yta~tiAEYfrd~G~dVll~--~Ds~-tR~A~A~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG~ 303 (369)
T cd01134 238 SIYTGITIAEYFRDMGYNVALM--ADST-SRWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAGR 303 (369)
T ss_pred HHHHHHHHHHHHHHcCCCEEEE--EcCh-hHHHHHHHHHHHhcCCCCCccCcCccHHHHHHHHHHhccc
Confidence 8999999999999999999987 3443 2233222111 123444445666555677888887653
No 153
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=40.28 E-value=24 Score=38.23 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=26.3
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008743 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
||+--|||.+|+||.-+++- + ..++....||++ .+.|-||
T Consensus 6 lSGiqPTG~lHLGNylGaik-~-~v~lq~q~~~~~--~~~IADl 45 (431)
T PRK12284 6 LTGITTTGTPHLGNYAGAIR-P-AIAASRQPGVES--FYFLADY 45 (431)
T ss_pred EEEecCCCcchHHHHHHHHH-H-HHHHHHhCCCcE--EEEeech
Confidence 89999999999999444332 1 233444568875 4556665
No 154
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=40.03 E-value=17 Score=38.04 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=27.2
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchh
Q 008743 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 179 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~ 179 (555)
|++--|||+||+||.=+++ .-+.++-+. ++| ...|.||=.
T Consensus 5 ~~G~~PTG~lHLG~~~g~~--~~~~~lQ~~--~~~--~~~IaD~ha 44 (333)
T PRK00927 5 LSGIQPTGKLHLGNYLGAI--KNWVELQDE--YEC--FFCIADLHA 44 (333)
T ss_pred EEeeCCCccchHHhHHHHH--HHHHHHHhc--CCe--EEEEecHHH
Confidence 7888999999999976554 234444442 554 466888744
No 155
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=35.24 E-value=26 Score=36.69 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=24.8
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008743 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
||+--|||.+|+||.-+++-- ..++....|+ ...+.|-||
T Consensus 7 ~sGiqPTG~~HLGnylga~k~--~~~lq~~~~~--~~~~~IADl 46 (332)
T PRK12556 7 LTGIKPTGYPHLGNYIGAIKP--ALQMAKNYEG--KALYFIADY 46 (332)
T ss_pred EEEECCCCcchHHHHHHHHHH--HHHHHHhcCC--eEEEEEech
Confidence 899999999999994433321 1233344444 444556665
No 156
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=33.65 E-value=1.6e+02 Score=29.88 Aligned_cols=128 Identities=20% Similarity=0.271 Sum_probs=62.3
Q ss_pred HHHHHHcCCeee--eecccccCCcHHHHHHHHHhCCCeeeecceEEEEecCCCCCeEEEecCC---------cccccchh
Q 008743 257 DKVYKRLRVDLE--EKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDG---------GFNYASTD 325 (555)
Q Consensus 257 ~~~~~~Lgi~f~--~~~es~~~~~~~~v~~~L~~~g~~~~~dGa~~~~~~g~~~d~vl~ksDG---------~~tY~~~D 325 (555)
.++|++|||... +..|+..- +++.+.|++ +..| ++.+||.| .++ |+-| .+-||..=
T Consensus 121 l~~Ykql~i~a~G~~~~E~eqp---~~i~~Ll~~----~~PD---IlViTGHD--~~~-K~~~d~~dl~~YrnSkyFVea 187 (283)
T TIGR02855 121 LKLYKKIGVPVVGIHCKEKEMP---EKVLDLIEE----VRPD---ILVITGHD--AYS-KNKGNYMDLNAYRHSKYFVET 187 (283)
T ss_pred HHHHHHhCCceEEEEecchhch---HHHHHHHHH----hCCC---EEEEeCch--hhh-cCCCChhhhhhhhhhHHHHHH
Confidence 558999999973 55665332 333333332 2223 34456653 211 2211 12333211
Q ss_pred HHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccce-eccCCccchHH
Q 008743 326 LAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLR-TRFSEVVRLVD 404 (555)
Q Consensus 326 iA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmS-kR~G~~v~l~d 404 (555)
+-.+. ++ .-+.|.++-.-|+=| .||..+..+ -+.+.. .+...+.|- +--|.- -+|.| |+-.++|++.|
T Consensus 188 Vk~aR-~y-~~~~D~LVIFAGACQ-S~yEall~A--GANFAS---SP~RVlIHa-lDPV~i--~eKia~T~i~~~V~i~d 256 (283)
T TIGR02855 188 VREAR-KY-VPSLDQLVIFAGACQ-SHFESLIRA--GANFAS---SPSRVNIHA-LDPVYI--VEKISFTPFMERVNIWE 256 (283)
T ss_pred HHHHH-hc-CCCcccEEEEcchhH-HHHHHHHHc--CccccC---CccceEEec-cCccee--EEeeeeccccceecHHH
Confidence 11111 12 236688775667655 577655433 122322 222335553 222211 12454 78889999999
Q ss_pred HHHH
Q 008743 405 LLDE 408 (555)
Q Consensus 405 ll~e 408 (555)
+++.
T Consensus 257 vi~n 260 (283)
T TIGR02855 257 VLRN 260 (283)
T ss_pred HHhh
Confidence 9886
No 157
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=31.38 E-value=42 Score=32.19 Aligned_cols=32 Identities=28% Similarity=0.226 Sum_probs=28.1
Q ss_pred ccchhhhhHHHHHHHHHHHCCCeEEEEeccCC
Q 008743 145 VGHLRSTIIGDSLARMLEFSNVEVLRRNHVGD 176 (555)
Q Consensus 145 vGHlR~~iiGd~laril~~~G~~V~~~~yi~D 176 (555)
+||--+++|.--+||.|+..|++|.++.-++=
T Consensus 71 ~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 71 AGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp EEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred hccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 59999999999999999999999999887663
No 158
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=31.08 E-value=37 Score=25.33 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=23.1
Q ss_pred CCCCcccchhhhhHHHHH--HHHHHHCCCeEEEEecc
Q 008743 140 AKEMHVGHLRSTIIGDSL--ARMLEFSNVEVLRRNHV 174 (555)
Q Consensus 140 ~kplHvGHlR~~iiGd~l--aril~~~G~~V~~~~yi 174 (555)
.||.|-=+-.....|.+. -|+|+.+||+|..+.|-
T Consensus 4 dGp~hy~~~~~~~~g~t~lk~r~L~~~G~~Vi~Ip~~ 40 (58)
T PF08373_consen 4 DGPSHYYRNSNNLTGSTKLKHRHLKALGYKVISIPYY 40 (58)
T ss_pred CCcHHhhCCCCccchHHHHHHHHHHHCCCEEEEecHH
Confidence 456664222233346655 47999999999999874
No 159
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.67 E-value=36 Score=35.30 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=25.6
Q ss_pred EEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCC
Q 008743 131 VVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGD 176 (555)
Q Consensus 131 ~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D 176 (555)
.| +|+--|+|.||+||-=.+ .-.++.-..+| +..-+.|-|
T Consensus 7 ~v-lSG~~PSG~lHLGny~ga----~~~~v~~q~~~-~~~f~~IaD 46 (314)
T COG0180 7 RV-LSGIQPSGKLHLGNYLGA----IRNWVLLQEEY-YECFFFIAD 46 (314)
T ss_pred eE-EecCCCCCCcchhHhHHH----HHHHHHHhccc-CceEEEEec
Confidence 44 899999999999996443 34444445554 333444545
No 160
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.36 E-value=20 Score=36.33 Aligned_cols=56 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEEC---------CCCccceeccCC
Q 008743 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG---------EDGKRLRTRFSE 398 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~---------~~G~kmSkR~G~ 398 (555)
|+.+++- ||+||..|..-...+++++.- .....+.-++--++.. ...+|||||.+|
T Consensus 154 YksThVP--VGeDQsQHleL~r~lA~~fN~-----~Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n 218 (347)
T KOG2713|consen 154 YKSTHVP--VGEDQSQHLELARHLAQAFNK-----TYGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPN 218 (347)
T ss_pred hcccccc--CCccHHHHHHHHHHHHHHHhh-----hccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCC
No 161
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=26.32 E-value=29 Score=29.46 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=11.6
Q ss_pred cCCCCCCCCcccchhh
Q 008743 135 SSPNIAKEMHVGHLRS 150 (555)
Q Consensus 135 ~SpNp~kplHvGHlR~ 150 (555)
+..++ +|+|.||+.-
T Consensus 4 ~~G~F-dp~H~GH~~l 18 (105)
T cd02156 4 FPGEP-GYLHIGHAKL 18 (105)
T ss_pred eCCCC-CCCCHHHHHH
Confidence 35566 8999999874
No 162
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=24.70 E-value=54 Score=30.65 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHCCCeEEEEeccCC
Q 008743 151 TIIGDSLARMLEFSNVEVLRRNHVGD 176 (555)
Q Consensus 151 ~iiGd~laril~~~G~~V~~~~yi~D 176 (555)
+.+| -|||+||.+||++..-+-..|
T Consensus 13 ~mLG-~LARwLRllGydt~~~~~~~d 37 (165)
T COG1656 13 AMLG-KLARWLRLLGYDTVYSSNESD 37 (165)
T ss_pred HhHH-HHHHHHHHcCCceeeeccCCc
Confidence 3444 589999999999998874444
No 163
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=24.50 E-value=95 Score=28.19 Aligned_cols=34 Identities=32% Similarity=0.357 Sum_probs=30.5
Q ss_pred CCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEe
Q 008743 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRN 172 (555)
Q Consensus 125 ~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~ 172 (555)
-.|++|+| -.||.+.|.-|+++|...|..|+...
T Consensus 26 ~~gk~v~V--------------vGrs~~vG~pla~lL~~~gatV~~~~ 59 (140)
T cd05212 26 LDGKKVLV--------------VGRSGIVGAPLQCLLQRDGATVYSCD 59 (140)
T ss_pred CCCCEEEE--------------ECCCchHHHHHHHHHHHCCCEEEEeC
Confidence 46888998 78999999999999999999998765
No 164
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=23.70 E-value=61 Score=29.59 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHCCCeEEEEeccCC
Q 008743 152 IIGDSLARMLEFSNVEVLRRNHVGD 176 (555)
Q Consensus 152 iiGd~laril~~~G~~V~~~~yi~D 176 (555)
.+| -||+.||.+||||....-+.|
T Consensus 8 ~L~-~Lar~LR~lG~Dt~~~~~~~D 31 (147)
T PF01927_consen 8 MLG-RLARWLRLLGYDTLYSRDIDD 31 (147)
T ss_pred CHH-HHHHHHHHCCCcEEEeCCCCh
Confidence 344 589999999999996654444
No 165
>PRK09620 hypothetical protein; Provisional
Probab=22.69 E-value=1.5e+02 Score=29.26 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=32.9
Q ss_pred CCceEEEEecCCCCCCCC-----cccchhhhhHHHHHHHHHHHCCCeEEEEe
Q 008743 126 RVKKAVVDFSSPNIAKEM-----HVGHLRSTIIGDSLARMLEFSNVEVLRRN 172 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kpl-----HvGHlR~~iiGd~laril~~~G~~V~~~~ 172 (555)
.|++|+| -++| |-.- .|.+--|.-+|-.||+.|...|++|+...
T Consensus 2 ~gk~vlI-TaG~--T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~ 50 (229)
T PRK09620 2 KGKKVLI-TSGG--CLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLH 50 (229)
T ss_pred CCCEEEE-eCCC--ccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEe
Confidence 3667777 3333 2232 67777789999999999999999998764
No 166
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=21.26 E-value=69 Score=27.00 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=19.8
Q ss_pred hhhhhHHHHHHHHHHHCCCeEEEEe
Q 008743 148 LRSTIIGDSLARMLEFSNVEVLRRN 172 (555)
Q Consensus 148 lR~~iiGd~laril~~~G~~V~~~~ 172 (555)
.||+-+...|-++|+..|.+|.+-.
T Consensus 6 irNa~Le~yL~~lL~~~G~~v~~y~ 30 (92)
T PF09456_consen 6 IRNAYLESYLQRLLSYHGFQVQRYE 30 (92)
T ss_dssp ---HHHHHHHHHHHCTTTEEEEE-S
T ss_pred ehhHHHHHHHHHHHHHCCcEEEEec
Confidence 6999999999999999999998854
Done!