BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008744
(555 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-trna Synthetase Complexed
With The Trna(arg) And L-arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
Length = 607
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 150/500 (30%), Positives = 236/500 (47%), Gaps = 30/500 (6%)
Query: 67 KGPQPVGQAIM--KNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPK 124
KG P A+ + P + +E GP F+ + ++AK + ++ E +
Sbjct: 79 KGANPKDLAVQWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSC 137
Query: 125 LRV--KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFG 182
V KK +++FSSPNIAK H GHLRSTIIG LA + E EV+R N++GDWG QFG
Sbjct: 138 KLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFG 197
Query: 183 MLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRF----DSDP---AFKERAQQAVVRLQ 235
+L FE++ N E + I L + Y R DS P + +A++ R++
Sbjct: 198 LL-AVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRME 256
Query: 236 SGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES-FYNPYIPGVIDELSKQGLVE 293
G+ + + W + E S +++ Y RL + + GES + ID ++GL
Sbjct: 257 DGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTH 316
Query: 294 ESQGARVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQ 350
E +GA +I + N L I+ KSDG Y + D+ A R + + +IYV Q
Sbjct: 317 EDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQD 376
Query: 351 LHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 410
LH F K+ G+ A D HV FG+V G + TR VV L ++L+E K
Sbjct: 377 LHAAQFFEILKQMGFEWAKD-----LQHVNFGMVQG-----MSTRKGTVVFLDNILEETK 426
Query: 411 NRSKAVLIERGKDKXXXXXXXXXXXXXVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNT 470
+ V+ ++ ++K VG A D++ R+ NY F +++ML+ +G+T
Sbjct: 427 EKMHEVM-KKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDT 485
Query: 471 AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLL-HFSEVIEEALTNL 529
YL YAH+R+ S+ R + +E L L + LL + +V+ A+
Sbjct: 486 GPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTH 545
Query: 530 LPNVVCEYLYNLSEYFTRFY 549
P V YL+ L+ + Y
Sbjct: 546 EPTTVVTYLFKLTHQVSSCY 565
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 152/587 (25%), Positives = 255/587 (43%), Gaps = 91/587 (15%)
Query: 11 VKRELEKVFDLALKAT-VPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGP 69
++R LE+ ALK VP V A K GDY L +++ K P
Sbjct: 2 LRRALEEAIAQALKEMGVPVRLKV---ARAPKDKPGDYGVP-LFALAKELR------KPP 51
Query: 70 QPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKK 129
Q + Q + LP E +E G G++N L + +L + + AP R
Sbjct: 52 QAIAQELKDRLPLPEFVEEAVPVG-GYLNFRL-------RTEALLREALRPKAPFPRRPG 103
Query: 130 AV-VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYL 188
V V+ +S N KE+HVGHLR+ +GD++AR+L ++ EVL N++ D G Q + +
Sbjct: 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETL-FA 162
Query: 189 FEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVR----LQSGEPKYHEA 244
+ + D E + F R+ R DP + ER Q A+ L+ GE +
Sbjct: 163 LRHYGLTWDGKE----KYDHFAGRAYVRLHQDPEY-ERLQPAIEEVLHALERGELREEVN 217
Query: 245 WAQICEISRKE-FDKVYKRL-------RVDLEEKGESFY--NPYIPGVIDELSKQGLVEE 294
+ +++ + Y L R L +K + +P++ + LV +
Sbjct: 218 RILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMD 277
Query: 295 SQGARVIFIEGVNIPL-IIVKSDGGFNYASTDLAALWYRLN------------------- 334
+ I G+ P ++++S+G Y + D+A ++++
Sbjct: 278 ASP----VIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLR 333
Query: 335 ---------EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVL 385
KAE I V DV Q +V +A AG+ + + KA H+ + VL
Sbjct: 334 TSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAE----KAHHLAYETVL 389
Query: 386 GEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKXXXXXXXXXXXXXVGYGAAKY 445
E G+++ R V + ++L+EA R++A++ E+ D V GA ++
Sbjct: 390 LE-GRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARM----VALGAIRF 444
Query: 446 FDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDH 505
+K F + + L+ +G+T Y+ YAHAR SI+RK+G + G+ L
Sbjct: 445 SMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAG-------EWGAPDLSQ 497
Query: 506 AD--ERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYS 550
A ERAL L LL F E + EA P+V+ +YL +L+ + +Y+
Sbjct: 498 ATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYN 544
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 139/581 (23%), Positives = 244/581 (41%), Gaps = 94/581 (16%)
Query: 43 KFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLS 102
K GD+ A L +K E + + + + NLP E I+ G++NV +
Sbjct: 37 KLGDFGTPIAFKLAKLLKRPPIEIA--EKIVEKLKLNLP--EGIKDVKAVN-GYINVFID 91
Query: 103 KNWMAKN-IQKMLVDGIETWAPKL-RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARM 160
A+ I +L G + ++ + KK +V+ +S N K +H+GH R+ I+GD +AR+
Sbjct: 92 YPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARI 151
Query: 161 LEFSNVEVLRRNHVGDWGTQFGML------IEYLFEKFPN-------SEDANETAIGELQ 207
L F EV +N++ D G QF + ++ FE+ N ++ + A+G L
Sbjct: 152 LRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKDNPIDHALGLL- 210
Query: 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYK------ 261
Y R + +P + + + +L+SGE Y A+ E+ R + YK
Sbjct: 211 --YVEVNRRLEDNPELENEIRDIMKKLESGE-LYGRKLAE--EVVRAQMVTTYKLGVKYD 265
Query: 262 --------------RLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVN 307
+ ++L K E+FY P D + V R +F + N
Sbjct: 266 LLVWESDIVRRKLFEIALELLSKNENFYIPS-----DGKYRGAFV---MDLRKLFPDMKN 317
Query: 308 IPLIIVKSDGGFNYASTDLAALWYRLNE----------EKAEWI---------------- 341
L++ +SDG Y D+A ++ + + W
Sbjct: 318 PILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNAN 377
Query: 342 IYVTDVG-QQLHFDMVFS-AAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399
I + +G +Q H + A + G+ A + Y H+ + V +GK + + V
Sbjct: 378 IVINVIGAEQKHPQLAIKYALQLLGFEDAAANLY----HLAYEHVERPEGKFSGRKGTWV 433
Query: 400 VRLVD-LLDEAKNRSKAVLIERGKDKXXXXXXXXXXXXXVGYGAAKYFDLKNNRLTNYTF 458
VD ++ EA R++ ++ E K+ VG GA +Y +K + F
Sbjct: 434 GFTVDEVIQEAVKRARELIEE--KNPALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIF 491
Query: 459 SFDQMLNDKGNTAVYLLYAHARICSIIRKSGK-----DIEELKKTGSLVLDHADERALGL 513
++ +LN +G +A Y+ YAHAR SI+RK+ + D E L K ER L +
Sbjct: 492 RWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVI 551
Query: 514 HLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQV 554
L F ++E+A ++ P+++ + L+ F +FY + V
Sbjct: 552 MLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDHPV 592
>pdb|3GDZ|A Chain A, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
pdb|3GDZ|B Chain B, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
pdb|3GDZ|C Chain C, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
pdb|3GDZ|D Chain D, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
Length = 109
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 7 NTGNVKREL-EKVFDLALKATVPNETDVRPLI-AACTAKFGDYQCNNAMGLWSKIKGKGT 64
N N++ L EKV + A P D P + + +FGDYQ N + K+
Sbjct: 2 NAXNIQALLSEKVSQALIAAGAP--ADCEPQVRQSAKVQFGDYQANGVXAVAKKLG---- 55
Query: 65 EFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKML 114
P+ + + ++ +L + + +AGPGF+N+ L ++A N+ + L
Sbjct: 56 --XAPRQLAEQVLSHLDLNGIANKVEIAGPGFINIFLDPAFLADNVNRAL 103
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 438 VGYGAAKYFDLKNNRLTNYTFSF-DQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELK 496
+G A +Y L T+ F D D N Y+ YAHARI + K+GK I+++
Sbjct: 303 IGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVM 362
Query: 497 KTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQV 554
K L+ D L L+ V+ +A + +YL NL+ F +FY+ +V
Sbjct: 363 KADLQSLNQ-DGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKV 419
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 131 VVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGML 184
++++ S N +H+GH R + GD+L R+ + +V D G Q +L
Sbjct: 33 LLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLL 86
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 84/226 (37%), Gaps = 40/226 (17%)
Query: 137 PNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFP-NS 195
P + ++H+GHL++ +GD LAR EVL H W FG+ E KF +
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVL---HPMGWDA-FGLPAENAALKFGVHP 97
Query: 196 EDANETAIGELQEFYRRSKNRFDSD-------PAFKERAQQAVVRLQSGEPKYHEA---- 244
+D I + +E R +D D P + Q +++ Y
Sbjct: 98 KDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVN 157
Query: 245 WAQICE--------------------ISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVID 284
W C+ + ++E ++ Y R+ E + P +
Sbjct: 158 WCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVK 217
Query: 285 ELSKQGLVEESQGARVIF-IEG--VNIPLIIVKSDGGFNYASTDLA 327
+ + + S+GA ++F +EG V IP+ + D F LA
Sbjct: 218 AMQR-AWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLA 262
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 84/226 (37%), Gaps = 40/226 (17%)
Query: 137 PNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFP-NS 195
P + ++H+GHL++ +GD LAR EVL H W FG+ E KF +
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVL---HPMGWDA-FGLPAENAALKFGVHP 97
Query: 196 EDANETAIGELQEFYRRSKNRFDSD-------PAFKERAQQAVVRLQSGEPKYHEA---- 244
+D I + +E R +D D P + Q +++ Y
Sbjct: 98 KDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVN 157
Query: 245 WAQICE--------------------ISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVID 284
W C+ + ++E ++ Y R+ E + P +
Sbjct: 158 WCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVK 217
Query: 285 ELSKQGLVEESQGARVIF-IEG--VNIPLIIVKSDGGFNYASTDLA 327
+ + + S+GA ++F +EG V IP+ + D F LA
Sbjct: 218 AMQR-AWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLA 262
>pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
pdb|3EZS|B Chain B, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
Length = 376
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 76 IMKNLPPSEMIESCSVAG-PGFVNVV----LSKNWMAKNIQKMLVDGIETWAPKLRVKKA 130
I +N PP ++E+C +AG F NV+ LSK A ++ + G K + +A
Sbjct: 199 IYENTPPPSLLEACXLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRA 258
Query: 131 VVDFSSPN 138
+ ++S N
Sbjct: 259 YLGYTSAN 266
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 124 KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVL 169
K + KK + + P ++ +HVGH R+ I D +AR VL
Sbjct: 30 KPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVL 75
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 124 KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVL 169
K + KK + + P ++ +HVGH R+ I D +AR VL
Sbjct: 30 KPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVL 75
>pdb|3MG2|A Chain A, Crystal Structure Of The Orange Carotenoid Protein Y44s
Mutant From Cyanobacteria Synechocystis Sp. Pcc 6803
pdb|3MG2|B Chain B, Crystal Structure Of The Orange Carotenoid Protein Y44s
Mutant From Cyanobacteria Synechocystis Sp. Pcc 6803
Length = 323
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%)
Query: 329 LWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED 388
WYRL E + + G QL + A G S T + + V G G+D
Sbjct: 109 FWYRLGELMEQGFVAPIPAGYQLSANANAVLATIQGLESGQQITVLRNAVVDMGFTAGKD 168
Query: 389 GKRL 392
GKR+
Sbjct: 169 GKRI 172
>pdb|3MG1|A Chain A, Crystal Structure Of The Orange Carotenoid Protein From
Cyanobacteria Synechocystis Sp. Pcc 6803
pdb|3MG1|B Chain B, Crystal Structure Of The Orange Carotenoid Protein From
Cyanobacteria Synechocystis Sp. Pcc 6803
Length = 323
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%)
Query: 329 LWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED 388
WYRL E + + G QL + A G S T + + V G G+D
Sbjct: 109 FWYRLGELMEQGFVAPIPAGYQLSANANAVLATIQGLESGQQITVLRNAVVDMGFTAGKD 168
Query: 389 GKRL 392
GKR+
Sbjct: 169 GKRI 172
>pdb|3MG3|A Chain A, Crystal Structure Of The Orange Carotenoid Protein R155l
Mutant From Cyanobacteria Synechocystis Sp. Pcc 6803
pdb|3MG3|B Chain B, Crystal Structure Of The Orange Carotenoid Protein R155l
Mutant From Cyanobacteria Synechocystis Sp. Pcc 6803
Length = 323
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 25/64 (39%)
Query: 329 LWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED 388
WYRL E + + G QL + A G S T + V G G+D
Sbjct: 109 FWYRLGELMEQGFVAPIPAGYQLSANANAVLATIQGLESGQQITVLLNAVVDMGFTAGKD 168
Query: 389 GKRL 392
GKR+
Sbjct: 169 GKRI 172
>pdb|2VDJ|A Chain A, Crystal Structure Of Homoserine O-acetyltransferase (meta)
From Bacillus Cereus With Homoserine
Length = 301
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 155 DSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSE 196
+ L R++E+S V H+ WG Q G+ Y +K+P E
Sbjct: 122 EELKRIMEYSKTNVTSTLHIC-WGAQAGLYHHYGVQKYPLKE 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,533,538
Number of Sequences: 62578
Number of extensions: 700990
Number of successful extensions: 1814
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1789
Number of HSP's gapped (non-prelim): 21
length of query: 555
length of database: 14,973,337
effective HSP length: 104
effective length of query: 451
effective length of database: 8,465,225
effective search space: 3817816475
effective search space used: 3817816475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)