Query 008744
Match_columns 555
No_of_seqs 240 out of 2086
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:43:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7u_A Arginyl-tRNA synthetase 100.0 3E-110 9E-115 924.9 43.6 526 9-555 29-571 (607)
2 2zue_A Arginyl-tRNA synthetase 100.0 2E-107 7E-112 908.0 44.8 526 10-555 4-593 (629)
3 1iq0_A Arginyl-tRNA synthetase 100.0 2.2E-98 8E-103 832.5 47.0 505 11-555 2-556 (592)
4 3fnr_A Arginyl-tRNA synthetase 100.0 2.9E-89 1E-93 734.2 42.5 399 99-555 1-420 (464)
5 4dlp_A Aminoacyl-tRNA syntheta 100.0 5.2E-40 1.8E-44 361.7 27.9 329 127-553 24-451 (536)
6 3kfl_A Methionyl-tRNA syntheta 100.0 2.3E-40 7.7E-45 366.1 21.3 330 125-553 23-468 (564)
7 1li5_A Cysrs, cysteinyl-tRNA s 100.0 2.8E-38 9.6E-43 340.4 24.3 308 126-551 19-372 (461)
8 3h99_A Methionyl-tRNA syntheta 100.0 3.3E-36 1.1E-40 333.0 24.1 330 125-553 15-472 (560)
9 2csx_A Methionyl-tRNA syntheta 100.0 1.5E-36 5E-41 331.5 20.1 325 127-553 4-420 (497)
10 2d5b_A Methionyl-tRNA syntheta 100.0 4.1E-36 1.4E-40 328.2 19.6 324 128-553 3-422 (500)
11 2x1l_A Methionyl-tRNA syntheta 100.0 1.3E-35 4.4E-40 326.0 21.8 330 126-553 10-440 (524)
12 3c8z_A Cysteinyl-tRNA syntheta 100.0 8.9E-32 3E-36 286.6 23.9 301 127-547 37-390 (414)
13 1rqg_A Methionyl-tRNA syntheta 100.0 1.1E-30 3.9E-35 295.5 26.6 330 128-552 2-473 (722)
14 3tqo_A Cysteinyl-tRNA syntheta 100.0 2.9E-30 9.9E-35 275.7 27.2 305 126-549 22-372 (462)
15 3sp1_A Cysteinyl-tRNA syntheta 100.0 9.9E-29 3.4E-33 265.0 24.3 327 129-546 42-416 (501)
16 3u1f_A Methionyl-tRNA syntheta 100.0 9.7E-28 3.3E-32 264.5 24.6 328 126-551 7-450 (542)
17 1wkb_A Leucyl-tRNA synthetase; 99.9 3.6E-25 1.2E-29 254.5 29.0 165 337-552 603-771 (810)
18 2o5r_A Glutamyl-tRNA synthetas 99.9 3E-26 1E-30 246.8 15.4 288 127-468 10-334 (481)
19 3al0_C Glutamyl-tRNA(Gln) amid 99.9 8.7E-26 3E-30 248.1 13.9 270 102-468 104-430 (592)
20 1ile_A Ilers, isoleucyl-tRNA s 99.9 2.9E-24 9.8E-29 247.0 24.4 172 337-549 544-719 (821)
21 1irx_A Lysyl-tRNA synthetase; 99.9 9.5E-26 3.2E-30 247.0 9.9 243 136-464 27-324 (523)
22 1ffy_A Isoleucyl-tRNA syntheta 99.9 1.6E-23 5.3E-28 242.2 22.4 164 342-550 551-721 (917)
23 1gax_A Valrs, valyl-tRNA synth 99.9 4.6E-23 1.6E-27 236.4 25.9 158 343-549 485-649 (862)
24 2v0c_A Aminoacyl-tRNA syntheta 99.9 1.3E-22 4.4E-27 233.5 25.4 123 390-550 636-760 (878)
25 4arc_A Leucine--tRNA ligase; l 99.9 1.7E-21 5.8E-26 222.9 26.7 166 342-549 546-760 (880)
26 3afh_A Glutamyl-tRNA synthetas 99.9 4.1E-22 1.4E-26 214.4 17.2 244 129-468 25-326 (488)
27 1nzj_A Hypothetical protein YA 99.9 8.7E-22 3E-26 199.7 11.3 232 134-455 9-287 (298)
28 3gdz_A Arginyl-tRNA synthetase 99.8 8.3E-21 2.8E-25 164.2 11.9 103 7-117 3-106 (109)
29 4g6z_A Glutamate-tRNA ligase; 99.8 1.8E-19 6.1E-24 192.9 17.9 246 128-468 24-335 (490)
30 1wz2_A Leucyl-tRNA synthetase; 99.8 5.9E-18 2E-22 197.3 28.3 166 337-553 603-772 (967)
31 2cfo_A Glutamyl-tRNA synthetas 99.8 8.5E-19 2.9E-23 189.0 15.7 238 135-468 6-320 (492)
32 1j09_A Glutamyl-tRNA synthetas 99.8 1.7E-18 5.9E-23 185.5 17.3 139 308-468 174-315 (468)
33 2ja2_A Glutamyl-tRNA synthetas 99.8 2.8E-18 9.7E-23 184.6 17.2 137 308-468 183-329 (498)
34 4gri_A Glutamate--tRNA ligase; 99.7 1.7E-17 5.7E-22 180.4 18.2 139 308-468 204-345 (512)
35 3aii_A Glutamyl-tRNA synthetas 99.7 7.4E-17 2.5E-21 174.1 8.4 224 128-466 95-392 (553)
36 1qtq_A GLNRS, protein (glutami 99.6 2.4E-14 8.1E-19 154.6 14.7 264 104-467 9-355 (553)
37 2hz7_A Glutaminyl-tRNA synthet 99.5 5E-14 1.7E-18 158.3 13.7 214 103-410 48-341 (851)
38 2cyb_A Tyrosyl-tRNA synthetase 98.3 1.3E-06 4.4E-11 89.5 7.6 61 335-405 168-228 (323)
39 2dlc_X Tyrosyl-tRNA synthetase 98.0 2.2E-05 7.5E-10 82.4 12.0 64 335-408 180-245 (394)
40 1n3l_A Tyrosyl-tRNA synthetase 97.9 9.5E-06 3.2E-10 84.6 7.0 60 336-405 177-237 (372)
41 2zp1_A Tyrosyl-tRNA synthetase 97.4 0.00035 1.2E-08 71.1 9.0 60 336-409 162-222 (314)
42 2cya_A Tyrosyl-tRNA synthetase 97.4 0.00035 1.2E-08 72.5 8.7 61 335-405 175-253 (364)
43 3p0j_A Tyrosyl-tRNA synthetase 96.7 0.0047 1.6E-07 69.0 10.6 64 336-408 182-248 (690)
44 3a04_A Tryptophanyl-tRNA synth 96.6 0.0036 1.2E-07 65.0 8.0 57 344-404 213-270 (372)
45 2pid_A Tyrosyl-tRNA synthetase 95.9 0.0052 1.8E-07 63.4 4.3 60 335-404 208-267 (356)
46 2jan_A Tyrosyl-tRNA synthetase 95.3 0.012 4.1E-07 62.1 4.8 60 335-404 185-245 (432)
47 2yxn_A Tyrosyl-tRNA synthetase 95.3 0.0084 2.9E-07 61.0 3.4 59 336-404 190-248 (322)
48 1jil_A Tyrrs, tyrosyl-tRNA syn 95.2 0.014 4.9E-07 61.4 4.9 59 336-404 185-244 (420)
49 2ts1_A Tyrosyl-tRNA synthetase 95.2 0.013 4.3E-07 61.8 4.2 59 336-404 184-243 (419)
50 1h3f_A Tyrosyl-tRNA synthetase 94.8 0.025 8.5E-07 59.7 5.2 59 336-404 186-245 (432)
51 2g36_A Tryptophanyl-tRNA synth 94.7 0.0086 3E-07 61.3 1.6 68 335-404 151-218 (340)
52 2ip1_A Tryptophanyl-tRNA synth 94.7 0.05 1.7E-06 57.4 7.3 64 336-409 248-314 (432)
53 2el7_A Tryptophanyl-tRNA synth 94.5 0.013 4.3E-07 60.0 2.3 62 336-405 140-209 (337)
54 1r6t_A Tryptophanyl-tRNA synth 94.1 0.05 1.7E-06 58.2 5.7 59 345-411 309-370 (477)
55 3tzl_A Tryptophanyl-tRNA synth 94.1 0.013 4.5E-07 59.5 1.2 67 336-404 138-205 (322)
56 1yi8_B Tryptophanyl-tRNA synth 93.6 0.024 8.2E-07 58.3 2.2 67 336-405 161-229 (351)
57 1y42_X Tyrosyl-tRNA synthetase 93.5 0.029 9.9E-07 58.5 2.6 65 336-404 231-306 (392)
58 3i05_A Tryptophanyl-tRNA synth 92.4 0.049 1.7E-06 56.8 2.4 54 344-405 229-284 (395)
59 1r6u_A Tryptophanyl-tRNA synth 92.4 0.039 1.3E-06 58.3 1.6 56 345-408 262-320 (437)
60 3tze_A Tryptophanyl-tRNA synth 92.2 0.097 3.3E-06 54.7 4.4 54 344-405 248-304 (406)
61 2yy5_A Tryptophanyl-tRNA synth 92.2 0.038 1.3E-06 56.7 1.3 66 335-408 145-222 (348)
62 1i6k_A TRPRS, tryptophanyl-tRN 92.1 0.068 2.3E-06 54.4 3.0 72 335-408 135-212 (328)
63 3vgj_A Tyrosyl-tRNA synthetase 91.8 0.14 4.8E-06 52.9 5.0 64 336-408 199-265 (373)
64 3hv0_A Tryptophanyl-tRNA synth 91.7 0.077 2.6E-06 55.3 2.8 56 344-407 225-283 (393)
65 3hzr_A Tryptophanyl-tRNA synth 91.0 0.17 5.9E-06 52.5 4.6 52 345-404 230-283 (386)
66 3jxe_A Tryptophanyl-tRNA synth 90.8 0.13 4.3E-06 53.6 3.4 61 338-408 208-271 (392)
67 2j5b_A Tyrosyl-tRNA synthetase 90.7 0.15 5.1E-06 52.3 3.8 63 337-409 186-251 (348)
68 3foc_A Tryptophanyl-tRNA synth 90.1 0.21 7E-06 52.8 4.4 58 344-409 292-352 (451)
69 2cyc_A Tyrosyl-tRNA synthetase 89.4 0.16 5.3E-06 52.7 2.7 69 336-408 179-269 (375)
70 2el7_A Tryptophanyl-tRNA synth 83.0 0.35 1.2E-05 49.3 1.2 39 134-177 5-44 (337)
71 3prh_A Tryptophanyl-tRNA synth 82.3 0.27 9.3E-06 51.0 0.1 67 336-405 170-243 (388)
72 2g36_A Tryptophanyl-tRNA synth 81.0 0.73 2.5E-05 46.9 2.8 39 134-177 16-54 (340)
73 3hzr_A Tryptophanyl-tRNA synth 80.0 1.3 4.4E-05 45.9 4.2 44 128-178 81-125 (386)
74 1i6k_A TRPRS, tryptophanyl-tRN 77.0 0.78 2.7E-05 46.5 1.5 38 134-177 5-42 (328)
75 3n9i_A Tryptophanyl-tRNA synth 76.1 1.1 3.7E-05 45.7 2.3 65 336-404 151-223 (346)
76 3sz3_A Tryptophanyl-tRNA synth 74.1 0.75 2.6E-05 46.8 0.5 67 336-404 142-217 (341)
77 2ts1_A Tyrosyl-tRNA synthetase 72.8 2.2 7.6E-05 44.6 3.7 41 130-177 31-72 (419)
78 1yi8_B Tryptophanyl-tRNA synth 70.7 1.2 4E-05 45.6 0.9 42 129-177 22-63 (351)
79 2yxn_A Tyrosyl-tRNA synthetase 70.0 2.3 7.9E-05 42.8 3.0 39 134-178 37-76 (322)
80 1y42_X Tyrosyl-tRNA synthetase 69.6 2.3 7.7E-05 44.2 2.9 40 131-177 66-106 (392)
81 1jil_A Tyrrs, tyrosyl-tRNA syn 69.4 2.4 8.1E-05 44.4 3.0 41 130-177 33-74 (420)
82 3vgj_A Tyrosyl-tRNA synthetase 68.1 3 0.0001 43.0 3.3 41 131-177 58-98 (373)
83 2pid_A Tyrosyl-tRNA synthetase 67.7 3 0.0001 42.7 3.3 42 129-177 46-88 (356)
84 3tzl_A Tryptophanyl-tRNA synth 66.9 1.3 4.6E-05 44.6 0.4 38 134-177 7-44 (322)
85 3jxe_A Tryptophanyl-tRNA synth 65.3 2.7 9.4E-05 43.5 2.4 42 129-177 73-115 (392)
86 2yy5_A Tryptophanyl-tRNA synth 61.9 2.1 7.2E-05 43.7 0.8 38 134-177 8-45 (348)
87 3i05_A Tryptophanyl-tRNA synth 61.8 5.4 0.00018 41.3 3.9 43 128-177 77-121 (395)
88 1h3f_A Tyrosyl-tRNA synthetase 61.7 5.4 0.00018 41.9 3.9 45 130-181 38-83 (432)
89 2jan_A Tyrosyl-tRNA synthetase 59.5 6 0.0002 41.5 3.8 41 130-177 33-74 (432)
90 2j5b_A Tyrosyl-tRNA synthetase 58.5 6.5 0.00022 40.0 3.7 42 130-177 41-82 (348)
91 3sz3_A Tryptophanyl-tRNA synth 54.8 3.3 0.00011 42.1 0.8 38 134-177 10-47 (341)
92 3tze_A Tryptophanyl-tRNA synth 53.5 9.4 0.00032 39.6 4.0 43 128-177 100-144 (406)
93 3hv0_A Tryptophanyl-tRNA synth 53.4 7.2 0.00025 40.3 3.1 44 129-179 74-119 (393)
94 3foc_A Tryptophanyl-tRNA synth 52.3 9.5 0.00033 40.1 3.9 44 128-178 90-135 (451)
95 1r6t_A Tryptophanyl-tRNA synth 50.9 11 0.00037 40.1 4.1 44 127-177 153-198 (477)
96 2ip1_A Tryptophanyl-tRNA synth 46.2 12 0.00042 39.1 3.6 41 130-177 103-145 (432)
97 3prh_A Tryptophanyl-tRNA synth 45.7 5.9 0.0002 40.9 1.0 38 134-177 39-76 (388)
98 1r6u_A Tryptophanyl-tRNA synth 41.7 16 0.00055 38.2 3.6 43 128-177 107-151 (437)
99 3n9i_A Tryptophanyl-tRNA synth 38.2 7.8 0.00027 39.4 0.5 36 134-177 19-56 (346)
100 2cyc_A Tyrosyl-tRNA synthetase 34.0 18 0.00062 37.1 2.4 39 134-177 37-75 (375)
101 1iio_A Conserved hypothetical 31.6 25 0.00087 27.8 2.3 69 9-79 6-81 (84)
102 3r6u_A Choline-binding protein 28.7 37 0.0013 33.2 3.6 41 141-181 12-56 (284)
103 2wh6_B BCL-2-like protein 11; 27.6 45 0.0016 19.9 2.4 18 533-550 7-24 (26)
104 1qm9_A Polypyrimidine tract-bi 21.5 1.4E+02 0.0047 26.4 5.8 35 140-174 120-154 (198)
No 1
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=2.6e-110 Score=924.94 Aligned_cols=526 Identities=28% Similarity=0.437 Sum_probs=451.7
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCC-CCccccccc-CCCCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCc
Q 008744 9 GNVKRELEKVFDLALKATVPNET-DVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMI 86 (555)
Q Consensus 9 ~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~-~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i 86 (555)
+++.+.+++.|.+++.+.+.... ...+.+++| +++||||++|++| +|.++ ++|++||++|+++|+.++.|
T Consensus 29 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~~~~~~~GD~a~~~~~--~k~~~------~~P~~iA~~i~~~l~~~~~i 100 (607)
T 1f7u_A 29 VNIVDLMRNYISQELSKISGVDSSLIFPALEWTNTMERGDLLIPIPR--LRIKG------ANPKDLAVQWAEKFPCGDFL 100 (607)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHGGGCEECSSGGGCSEEEEGGG--GCCTT------CCHHHHHHHHHHTCCCTTTE
T ss_pred ccHHHHHHHHHHHHHHHHhCCCccccccceeCCCCCCCCchhhHHHH--HHhcC------CCHHHHHHHHHHhccccCce
Confidence 35666677777777766532111 122345544 7789999998766 37777 99999999999999877889
Q ss_pred eeeEEecCCeEEEEeCHHHHHHHH-HHHHHcCCC-CCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHC
Q 008744 87 ESCSVAGPGFVNVVLSKNWMAKNI-QKMLVDGIE-TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFS 164 (555)
Q Consensus 87 ~~v~v~gpGfiN~~l~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~ 164 (555)
++++++|| ||||+|+++++.+.+ ..++..+.. |..+.+++++|+||||||||+|||||||+||+||||+|+|+|+++
T Consensus 101 ~~ve~ag~-fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~ 179 (607)
T 1f7u_A 101 EKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKL 179 (607)
T ss_dssp EEEEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHT
T ss_pred eEEEEcCC-EEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHc
Confidence 99999996 999999999999755 456665544 333446789999999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHHhcccCCC-------hHHHHHHHHHHHHHccC
Q 008744 165 NVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSD-------PAFKERAQQAVVRLQSG 237 (555)
Q Consensus 165 G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~-------~~~~~~~~~~~~~le~g 237 (555)
||+|+++|||||||+||++++.+ +.++++.......++.++.++|+++++.++++ +.+.++|++.+++||+|
T Consensus 180 G~~V~~~~~i~D~G~Q~~~l~~~-~~~~g~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~g 258 (607)
T 1f7u_A 180 GWEVIRMNYLGDWGKQFGLLAVG-FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDG 258 (607)
T ss_dssp TCEEEEEEEEBCCSHHHHHHHHH-HHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHT
T ss_pred CCCeeEEEeecCcchHHHHHHHH-HHHhCchhhccCCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999877 45565432223356888999999999988888 88999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eecccccC-CcHHHHHHHHHhCCCeeeecceEEEEec--CCCCC-eEE
Q 008744 238 EPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYN-PYIPGVIDELSKQGLVEESQGARVIFIE--GVNIP-LII 312 (555)
Q Consensus 238 d~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~es~~~-~~~~~v~~~L~~~g~~~~~dGa~~~~~~--g~~~d-~vl 312 (555)
|+++.++|++++++++++|+++|++|||+|| |.+||.|. +.++++++.|+++|++|+++|++||+++ |++.| +|+
T Consensus 259 d~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~g~~~d~~v~ 338 (607)
T 1f7u_A 259 DEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIV 338 (607)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTCEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhHHHHHHHHHHhCCCEEEECCcEEEEecccCCCCCceeE
Confidence 9999999999999999999999999999995 78999887 7899999999999999999999999998 44544 899
Q ss_pred EecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccc
Q 008744 313 VKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRL 392 (555)
Q Consensus 313 ~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~km 392 (555)
+||||+++|.|+|||+|+||+..+++|++|||||.+|+.||+|++++++++|++ ++..+.|++||+|. ||
T Consensus 339 ~KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~-----~~~~~~Hv~fg~v~-----kM 408 (607)
T 1f7u_A 339 QKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFE-----WAKDLQHVNFGMVQ-----GM 408 (607)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCG-----GGGGEEEECCCCEE-----SC
T ss_pred eccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCC-----cCcEEEEecccccc-----cc
Confidence 999999999999999999999778999999999999999999999999999994 45579999999986 49
Q ss_pred eeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhH
Q 008744 393 RTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAV 472 (555)
Q Consensus 393 SkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ 472 (555)
|||+|++|+|+||++++..+|.+.+.++ +..-...++++++|+++|++|||||+|+.++.++++|||+++++++|||||
T Consensus 409 SkR~G~~v~L~dLlde~~~~a~~~~~~~-~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~p 487 (607)
T 1f7u_A 409 STRKGTVVFLDNILEETKEKMHEVMKKN-ENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGP 487 (607)
T ss_dssp CGGGTCCCBHHHHHHHHHHHHHHHHHTC-HHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHH
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHhC-cccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchH
Confidence 9999999999999999999887665522 100011357889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhC-CChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccc
Q 008744 473 YLLYAHARICSIIRKSG-KDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSN 551 (555)
Q Consensus 473 ylqYa~aR~~silrk~~-~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~ 551 (555)
||||||||+|||+||+. .....+...+...+.++.|++|++.|.+||++++.|+++++||.+|.||++||+.||+||++
T Consensus 488 ylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~fY~~ 567 (607)
T 1f7u_A 488 YLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDV 567 (607)
T ss_dssp HHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999983 22211111122235689999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 008744 552 CQVQ 555 (555)
Q Consensus 552 ~~Vl 555 (555)
||||
T Consensus 568 ~~Vl 571 (607)
T 1f7u_A 568 LWVA 571 (607)
T ss_dssp CCST
T ss_pred CCCC
Confidence 9997
No 2
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=1.9e-107 Score=907.95 Aligned_cols=526 Identities=24% Similarity=0.350 Sum_probs=456.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhhCCC--CCCc
Q 008744 10 NVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPP--SEMI 86 (555)
Q Consensus 10 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~--~~~i 86 (555)
++++.|.+.|.+++.+.... ......+++| +++|||||||+||.|||.++ ++|++||++|+++|+. ++.|
T Consensus 4 ~~~~~i~~~~~~a~~~~~~~-~~~~~~v~~~~~~~~GD~~~n~a~~lak~~~------~~P~~iA~~i~~~l~~~~~~~i 76 (629)
T 2zue_A 4 EIRESVKERIEEIIKEIAPQ-WEGEIELKETPDPKLGDFGTPIAFKLAKLLK------RPPIEIAEKIVEKLKLNLPEGI 76 (629)
T ss_dssp TTHHHHHHHHHHHHHHHCTT-CCCCCCCEECSSGGGCSEEECHHHHHHHHHT------SCHHHHHHHHHHHHTTSCCTTE
T ss_pred HHHHHHHHHHHHHHHhcCcc-ccccceeeCCCCCCCCceeHHHHHHHHHHcC------CCHHHHHHHHHHHhhhccCCCe
Confidence 56778888888888765321 1122335544 77899999999999999999 9999999999999976 6789
Q ss_pred eeeEEecCCeEEEEeCHHHHHHHH-HHHHHcCCC-CCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHC
Q 008744 87 ESCSVAGPGFVNVVLSKNWMAKNI-QKMLVDGIE-TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFS 164 (555)
Q Consensus 87 ~~v~v~gpGfiN~~l~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~ 164 (555)
++|+|+| |||||+|++.++...+ ..++..+.. |..+.+++++|+||||||||+|||||||+||+|+||+|||+|+++
T Consensus 77 ~~vevag-GfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~~~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~ 155 (629)
T 2zue_A 77 KDVKAVN-GYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFL 155 (629)
T ss_dssp EEEEEET-TEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEcC-CEEEEEECHHHHHHHHHHHHHhcchhcCCCccCCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHc
Confidence 9999999 9999999999655554 566666554 333456789999999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCC----------CcccH-HHHHHHHHHHhcccCCChHHHHHHHHHHHH
Q 008744 165 NVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDA----------NETAI-GELQEFYRRSKNRFDSDPAFKERAQQAVVR 233 (555)
Q Consensus 165 G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~----------~~~~i-~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
||+|.++|||||||+||++++.+.. +++..... +++++ ..+.++|+++++.++.+|+|.+++++.+.+
T Consensus 156 G~~V~~~~~i~D~G~Q~~~l~~~~~-~~g~~~~~~~~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~ 234 (629)
T 2zue_A 156 GYEVEVQNYIDDLGIQFAQVYWGYL-RLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKK 234 (629)
T ss_dssp TCEEEEEEEECTTSHHHHHHHHHHH-HCHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CCCceEEecccchhHHHHHHHHHHH-HhCCcchhhhhhhcccccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 9999999999999999999986543 23221100 23455 457788999988888899999999999999
Q ss_pred HccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eeccccc--CCcHHHHHHHHHhCCCee-----eecceEEEEec-
Q 008744 234 LQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFY--NPYIPGVIDELSKQGLVE-----ESQGARVIFIE- 304 (555)
Q Consensus 234 le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~es~~--~~~~~~v~~~L~~~g~~~-----~~dGa~~~~~~- 304 (555)
+|+|| .+|+++++.++..|+++|++|||+|| |.+||.| .+.++++++.|+++|++| +.+|++|++++
T Consensus 235 ~e~gd----~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~ 310 (629)
T 2zue_A 235 LESGE----LYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRK 310 (629)
T ss_dssp HHHSS----SCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTT
T ss_pred ccccc----HHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccchhHHHHHHHHHHCCCccccccCCcCCcEEEECcc
Confidence 99998 89999999999999999999999996 7789988 889999999999999999 88999999998
Q ss_pred -CCCCC---eEEEecCCcccccchhHHHHHHH---------hhhc-------------------CCCeEEEEeeCCcccc
Q 008744 305 -GVNIP---LIIVKSDGGFNYASTDLAALWYR---------LNEE-------------------KAEWIIYVTDVGQQLH 352 (555)
Q Consensus 305 -g~~~d---~vl~ksDG~~tY~~~DiA~~~~r---------~~~~-------------------~~d~iI~V~g~dq~~h 352 (555)
|++++ +|++||||+++|+++|+||++|| ...+ ++|++|||||.+|+.|
T Consensus 311 ~g~~~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~IyV~g~~q~~~ 390 (629)
T 2zue_A 311 LFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHP 390 (629)
T ss_dssp TCSSSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEEEEEEEGGGHHH
T ss_pred cCCccccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcEEEEEeCcHhhH
Confidence 55556 89999999999999999999995 5444 8999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccC--CccchHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Q 008744 353 FDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFS--EVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEE 430 (555)
Q Consensus 353 f~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G--~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~ 430 (555)
|+|++++++++|+++ .+..+.|++||+|+.+ |+|||||+| |+|+++||+++++++|.+.+.++++ ++++++
T Consensus 391 ~~~l~~~l~~lG~~~----~~~~~~h~~~g~V~~~-~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~--~~~~~~ 463 (629)
T 2zue_A 391 QLAIKYALQLLGFED----AAANLYHLAYEHVERP-EGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNP--ALSDEE 463 (629)
T ss_dssp HHHHHHHHHHTTCHH----HHHTEEEEEECCEEBT-TBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCT--TSCHHH
T ss_pred HHHHHHHHHHcCCCC----CCCeEEEEEeeeEEcC-CCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCc--ccchhh
Confidence 999999999999942 1346899999999965 667999999 9999999999999999999999865 589999
Q ss_pred HHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCCh-----hhhhhcCCCCCCc
Q 008744 431 LEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDI-----EELKKTGSLVLDH 505 (555)
Q Consensus 431 ~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~-----~~~~~~~~~~l~~ 505 (555)
.+++|+++|++|+|||+|+.++.++++|||+.++++++||++||||+|||+|||+||++... +..+......+.+
T Consensus 464 ~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~ 543 (629)
T 2zue_A 464 KAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLS 543 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCC
T ss_pred HHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999985322 0001111123558
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccccCC
Q 008744 506 ADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 555 (555)
Q Consensus 506 ~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~Vl 555 (555)
+.|++|++.|.+||+++.+|+++++||++|.||++||+.||+||++||||
T Consensus 544 ~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La~~fn~fy~~~~vl 593 (629)
T 2zue_A 544 ERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDHPVL 593 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999999999999999997
No 3
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=2.2e-98 Score=832.52 Aligned_cols=505 Identities=27% Similarity=0.358 Sum_probs=434.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCCceee
Q 008744 11 VKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESC 89 (555)
Q Consensus 11 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v 89 (555)
+++.|++.|.+++.+... ...+.+++| +++|||||||+ |.|||.++ ++|++||++|++.|+.++.|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~gD~~~~~-~~lak~~~------~~P~~iA~~i~~~l~~~~~~~~~ 71 (592)
T 1iq0_A 2 LRRALEEAIAQALKEMGV---PVRLKVARAPKDKPGDYGVPL-FALAKELR------KPPQAIAQELKDRLPLPEFVEEA 71 (592)
T ss_dssp CHHHHHHHHHHHHHTTSC---CCCCCCEECSTTSSCSEEEEC-SHHHHHTT------SCHHHHHHHHHHTCCCCTTEEEE
T ss_pred hHHHHHHHHHHHHHhcCC---CccceeeCCCCCCCCcchhhH-HHHHHHcC------CCHHHHHHHHHHhccccCcEEEE
Confidence 567788888888876532 122335544 78999999995 99999999 99999999999999877889999
Q ss_pred EEecCCeEEEEeCHHHHHHHHHH-HHHcCCCCCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeE
Q 008744 90 SVAGPGFVNVVLSKNWMAKNIQK-MLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEV 168 (555)
Q Consensus 90 ~v~gpGfiN~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V 168 (555)
+++| |||||+|+++++...+.. ++..+.. + | +|+||||||||+|||||||+|++|+||+|||+|+++||+|
T Consensus 72 ~~~g-gfiN~~l~~~~~~~~~~~~~~~~~~~-~-----g-~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V 143 (592)
T 1iq0_A 72 VPVG-GYLNFRLRTEALLREALRPKAPFPRR-P-----G-VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREV 143 (592)
T ss_dssp EEET-TEEEEEECHHHHHHHHHSCCCCCCCE-E-----E-EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEcC-CEEEEEECHHHHHHHHHHHHHhcCcc-c-----C-eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCce
Confidence 9999 999999999977776653 2222222 1 1 8999999999999999999999999999999999999999
Q ss_pred EEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 008744 169 LRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQI 248 (555)
Q Consensus 169 ~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~ 248 (555)
.++|||||||+||++++.+.. +++.+......+...+.++|+++++.++.+ ++.+++++.++++|+|+ . +++
T Consensus 144 ~~~~~i~D~G~q~~~li~~~~-~~g~d~~~~~~~d~~~g~~y~~~~~~~~~~-~~~~~a~~~~~~~e~g~--~----~~~ 215 (592)
T 1iq0_A 144 LVLNYIDDTGRQAAETLFALR-HYGLTWDGKEKYDHFAGRAYVRLHQDPEYE-RLQPAIEEVLHALERGE--L----REE 215 (592)
T ss_dssp EEEEEECTTSHHHHHHHHHHH-HTTCCCCSSSCHHHHHHHHHHHHHHCTTTG-GGHHHHHHHHHHHHTTT--T----HHH
T ss_pred EEEeccCCcchHHHHHHHHHH-HhCCcccCCCCcchhHHHHHHHHHHHHHhh-hHHHHHHHHHHhCCchH--H----HHH
Confidence 999999999999999986643 455433211245567889999999888777 89999999999999998 2 789
Q ss_pred HHHHHHHHHHHHHHcCCeee-eeccccc--CCcHHHHHHHHHhCCCee-----eecceEEEEec--CCCCC---eEEEec
Q 008744 249 CEISRKEFDKVYKRLRVDLE-EKGESFY--NPYIPGVIDELSKQGLVE-----ESQGARVIFIE--GVNIP---LIIVKS 315 (555)
Q Consensus 249 ~~~~~~~~~~~~~~Lgi~f~-~~~es~~--~~~~~~v~~~L~~~g~~~-----~~dGa~~~~~~--g~~~d---~vl~ks 315 (555)
++.+.+.|+++|++|||+|| |.+||.+ .+.++++++.|+++|++| +.+|++|++++ |++++ +|++||
T Consensus 216 ~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~~g~~~~l~~~vi~ks 295 (592)
T 1iq0_A 216 VNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRS 295 (592)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEECT
T ss_pred HHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEechhcCCCCCCCceEEEec
Confidence 99999999999999999996 7789887 889999999999999999 88999999998 66556 899999
Q ss_pred CCcccccchhHHHHHHH--------hhhc--------------------CCCeEEEEeeCCccccHHHHHHHHHHcCCCC
Q 008744 316 DGGFNYASTDLAALWYR--------LNEE--------------------KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS 367 (555)
Q Consensus 316 DG~~tY~~~DiA~~~~r--------~~~~--------------------~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~ 367 (555)
||+++|+++|+||++|| ...+ ++|++|||||.+|..||++++++++++|+++
T Consensus 296 dG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~~~~alG~~~ 375 (592)
T 1iq0_A 296 NGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPA 375 (592)
T ss_dssp TSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHH
T ss_pred CCceEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999994 5444 8999999999999999999999999999942
Q ss_pred CCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhh
Q 008744 368 ADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFD 447 (555)
Q Consensus 368 ~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~ 447 (555)
.+..+.|++||+|+. +|+|||||+||+|+++||+++++++|.+.+.++++ +|+++| ++|+++|++++|||+
T Consensus 376 ----~~~~~~H~~~g~v~~-~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~--~~~~~e--~~a~~vg~~aiRyf~ 446 (592)
T 1iq0_A 376 ----LAEKAHHLAYETVLL-EGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNP--DHPDKE--EAARMVALGAIRFSM 446 (592)
T ss_dssp ----HHTTEEEEEECCEEE-TTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCT--TCSCHH--HHHHHHHHHHHHHHH
T ss_pred ----CCCcEEEEEeeEEEc-CCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCC--CCCcHH--HHHHhhcHHHHHHHH
Confidence 145799999999986 57789999999999999999999999999999865 467665 899999999999999
Q ss_pred hccCCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHH
Q 008744 448 LKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT 527 (555)
Q Consensus 448 L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~ 527 (555)
|+..+.++++|||++++++++|+++|+||+|+|+|||++|++.... + + ..+.++.|++|+..|.+||+++.+|++
T Consensus 447 L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~--~--~-~~l~~~~e~~L~~~l~~~~~~v~~a~~ 521 (592)
T 1iq0_A 447 VKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGA--P--D-LSQATPYERALALDLLDFEEAVLEAAE 521 (592)
T ss_dssp HHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCC--C--C-GGGCCHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccCC--C--c-cCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999864321 1 1 124478899999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHhcccccc-------cCC
Q 008744 528 NLLPNVVCEYLYNLSEYFTRFYSNC-------QVQ 555 (555)
Q Consensus 528 ~~~p~~l~~yl~~La~~fn~fY~~~-------~Vl 555 (555)
+++||.+|.||++||+.||+||++| |||
T Consensus 522 ~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl 556 (592)
T 1iq0_A 522 ERTPHVLAQYLLDLAASWNAYYNARENGQPATPVL 556 (592)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCST
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHhccccccCCcee
Confidence 9999999999999999999999999 886
No 4
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=2.9e-89 Score=734.20 Aligned_cols=399 Identities=21% Similarity=0.310 Sum_probs=341.6
Q ss_pred EEeCHHHHHHHHHHHHHcCCC-CCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 99 VVLSKNWMAKNIQKMLVDGIE-TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
|+|+++++...+.++++.++. |..+. ++++|+||||||||||||||||+||++|||+|||+|+++||+|.|+||||||
T Consensus 1 ~~l~~~~~~~~l~~i~~~~~~yG~~~~-~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~ 79 (464)
T 3fnr_A 1 MSLSKTFLNELANQALTNPNDFTKGEK-KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDA 79 (464)
T ss_dssp --CCHHHHHHHHHHHHHSGGGTTCCCC-CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred CEECHHHHHHHHHHHHHhHHhcCCCCC-CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCc
Confidence 689999999999999987665 33344 7899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhC-----------CCCCCCCcccHHHHHH-HHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHH
Q 008744 178 GTQFGMLIEYLFEKF-----------PNSEDANETAIGELQE-FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAW 245 (555)
Q Consensus 178 G~Q~~~l~~~~~~~~-----------~~~~~~~~~~i~~l~~-~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w 245 (555)
|+||++|+.++..++ |+. .+.++++.++++ ++.+....+. +|++...+|
T Consensus 80 G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~-~y~g~~~~~~a~~~~~~~~~~~~------------------~~~~~~~~~ 140 (464)
T 3fnr_A 80 GNQIYLLGLSILLSVKESILHENVEYPEQ-YYKGEYIVDLAKEAFEKFGKEFF------------------SEENIPSLA 140 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCCCSS-CCCSHHHHHHHHHHHHHHCGGGC------------------SGGGHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCchh-hcCccHHHHHHHHHHHhcchhhc------------------CcHHHHHHH
Confidence 999999987764321 222 356677777654 3333222221 145566899
Q ss_pred HHHHHHHHHHHHHHHHHcCCeee-eecc-cccCCcHHHHHHHHHhCCCeeeecceEEEEec--CCCCCeEEEecCCcccc
Q 008744 246 AQICEISRKEFDKVYKRLRVDLE-EKGE-SFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNY 321 (555)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Lgi~f~-~~~e-s~~~~~~~~v~~~L~~~g~~~~~dGa~~~~~~--g~~~d~vl~ksDG~~tY 321 (555)
+.++++++++|+++|++|||+|| |++| |+|. .++++++.|+++|++|++|||+|++++ |+++|+||+||||++||
T Consensus 141 ~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~-~~~~vv~~L~~~g~~~e~dGa~~~~~~~~g~~~~~vl~ksDG~~~Y 219 (464)
T 3fnr_A 141 DWAKDKMLVLIKQNLEQAKIKIDSYVSERSYYD-ALNATLESLKEHKGIYEQEGKIWLASSQKGDEKDRVIIREDGRGTY 219 (464)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSCEEEGGGGST-THHHHHHHHHHTTCEEEETTEEEECGGGGTCSSCEEEECTTSCBCH
T ss_pred HHHHHHHHHHHHHHHHHhCCCceeecCHHHHHH-HHHHHHHHHHHCCCEEEeCCeEEEEecccCCCCceEEEeCCCceeh
Confidence 99999999999999999999996 8899 6777 999999999999999999999999997 67789999999999999
Q ss_pred cchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEE-ECCCCc--cceeccCC
Q 008744 322 ASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV-LGEDGK--RLRTRFSE 398 (555)
Q Consensus 322 ~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v-~~~~G~--kmSkR~G~ 398 (555)
+|+||||+++|+ ++++|++|||+|+||+.||++++++++++|++| +++.|+.+|+| ++++|+ |||||+||
T Consensus 220 ~t~DiA~~~~r~-~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~------~~~~h~~~g~V~l~~dG~~~KMSKr~Gn 292 (464)
T 3fnr_A 220 LAADIVYHKDKM-SRGYGKCINIWGADHHGYIPRMKAAMEFLGFDS------NNLEIILAQMVSLLKDGEPYKMSKRAGN 292 (464)
T ss_dssp HHHHHHHHHHHH-TSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCG------GGEEEEEECCEEEEETTEECCC---CCS
T ss_pred hhHHHHHHHHHH-HcCCCeEEEEecCcHHHHHHHHHHHHHHcCCCc------cceEEEEeeeEEecCCCcccCCcCcCCC
Confidence 999999999999 568999999999999999999999999999953 37899999999 556785 99999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCcccccccccccc-CChhHHHHHH
Q 008744 399 VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDK-GNTAVYLLYA 477 (555)
Q Consensus 399 ~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~-~n~~~ylqYa 477 (555)
+|+++|++++ +|++++|||+++..+.++++|||+++.++. +|+++|+||+
T Consensus 293 ~v~l~dll~~-----------------------------~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa 343 (464)
T 3fnr_A 293 FILMSDVVDE-----------------------------IGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYA 343 (464)
T ss_dssp SCBHHHHHHH-----------------------------HCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHH
T ss_pred CCCHHHHHhh-----------------------------ccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHH
Confidence 9999999998 799999999999999999999999999974 4666799999
Q ss_pred HHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccccccCC
Q 008744 478 HARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 555 (555)
Q Consensus 478 ~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~Vl 555 (555)
|+|+|||+||++.....++..+...+.++ |++|+..|.+||+++.+++++++||.+|+||++||..||+||++||||
T Consensus 344 ~aRi~silrk~~~~~~~~~~~~~~~L~~~-e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~vl 420 (464)
T 3fnr_A 344 HARIHQVFAKAGKKIDDVMKADLQSLNQD-GVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVV 420 (464)
T ss_dssp HHHHHHHHHHTTCCTTTSTTCCCTTCCHH-HHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred HHHHHHHHHHhhccCCCccccChhhCChH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 99999999998643211111122345555 999999999999999999999999999999999999999999999996
No 5
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=5.2e-40 Score=361.66 Aligned_cols=329 Identities=13% Similarity=0.124 Sum_probs=242.5
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHH
Q 008744 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (555)
++++.|....|+||||+||||+|++++||+|+|+++.+||+|.++++++|+|.++...+...
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~------------------ 85 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKE------------------ 85 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH------------------
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHc------------------
Confidence 46899999999999999999999999999999999999999999999999999875443110
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eecc--cccCCcHHHHH
Q 008744 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGE--SFYNPYIPGVI 283 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~e--s~~~~~~~~v~ 283 (555)
..+ ++++++.+.+.|++++++|||+|| +..+ ..|.+.+++++
T Consensus 86 -----------g~~------------------------~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~ 130 (536)
T 4dlp_A 86 -----------GIT------------------------PRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIW 130 (536)
T ss_dssp -----------TSC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred -----------CCC------------------------HHHHHHHHHHHHHHHHHHcCCCCCcceeCCCHHHHHHHHHHH
Confidence 011 234677888899999999999996 4333 35778899999
Q ss_pred HHHHhCCCeeeecceEEEEec---------------C-------------------------------------------
Q 008744 284 DELSKQGLVEESQGARVIFIE---------------G------------------------------------------- 305 (555)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~---------------g------------------------------------------- 305 (555)
++|.++|++|+.++.+|+... |
T Consensus 131 ~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~ 210 (536)
T 4dlp_A 131 QAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPA 210 (536)
T ss_dssp HHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESH
T ss_pred HHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCcH
Confidence 999999999998877765321 0
Q ss_pred ------------CCCCeEEEecC-----------Ccccccchh--HHHHH---H-----Hhh-hcCCCeEEEEeeCCccc
Q 008744 306 ------------VNIPLIIVKSD-----------GGFNYASTD--LAALW---Y-----RLN-EEKAEWIIYVTDVGQQL 351 (555)
Q Consensus 306 ------------~~~d~vl~ksD-----------G~~tY~~~D--iA~~~---~-----r~~-~~~~d~iI~V~g~dq~~ 351 (555)
...|..|.|++ +..+|+.-| ++|.- | +++ .|+.| ++++|.||..
T Consensus 211 ~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~d--v~~~G~D~~~ 288 (536)
T 4dlp_A 211 ERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITALGYPDTTDERWAYWPAN--AHIIGKDISR 288 (536)
T ss_dssp HHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCS--EEEEEGGGHH
T ss_pred HHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcc--eEEeechHHH
Confidence 11355666652 233444333 44320 1 111 24455 8899999976
Q ss_pred cHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 008744 352 HFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEE 429 (555)
Q Consensus 352 hf~~~~--~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~ 429 (555)
|..++ +.+.++|+++ + ..+.. +|+|+. +|+|||||+||+|++.|++++
T Consensus 289 -fh~~~~~a~l~a~g~~~----~-~~v~~--hg~v~~-~G~KMSKS~GNvi~p~d~i~~--------------------- 338 (536)
T 4dlp_A 289 -FHAVYWPAFLMSAQLPL----P-KRVFA--HGFLFN-RGEKMSKSVGNVIDPFELVER--------------------- 338 (536)
T ss_dssp -HHHTHHHHHHHHTTCCC----C-SCEEE--ECCEEC-------------CCHHHHHHH---------------------
T ss_pred -HHHHHHHHHHHHCCCCC----C-cEEEe--eeeEee-CCceecccCCCCCCHHHHHHH---------------------
Confidence 44444 5677889853 2 23322 388875 899999999999999999998
Q ss_pred HHHHHHHhhhhhhHHHhhhc-cCCCCCccccccccccc-cCChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHH
Q 008744 430 ELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHAD 507 (555)
Q Consensus 430 ~~~~~a~~vg~~airy~~L~-~~~~~~~~Fd~~~~~~~-~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~ 507 (555)
+|+|++||++++ ....+|++||++.+.+. +.+....++|+++|+++++.+...+. ++. ....++.
T Consensus 339 --------~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~--~p~---~~~~~~~ 405 (536)
T 4dlp_A 339 --------YGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGK--VPQ---PGAFSEA 405 (536)
T ss_dssp --------HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTB--CCC---CCCCCHH
T ss_pred --------cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCC---cccCCHH
Confidence 799999999999 57789999999999774 55677889999999999998765332 111 1123678
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccccc
Q 008744 508 ERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 553 (555)
Q Consensus 508 e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 553 (555)
+++|+..+..+++.+.+++++++|+.+++++++++..+|.||+.++
T Consensus 406 d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k 451 (536)
T 4dlp_A 406 DKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQE 451 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999999999998765
No 6
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=2.3e-40 Score=366.06 Aligned_cols=330 Identities=15% Similarity=0.151 Sum_probs=251.3
Q ss_pred CCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHH
Q 008744 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (555)
Q Consensus 125 ~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (555)
.+++++.|...+||||||+||||+|++++||+|||+++..||+|.++++++|+|.++...+..
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~----------------- 85 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAK----------------- 85 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHH-----------------
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHH-----------------
Confidence 456789999999999999999999999999999999999999999999999999987543211
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee-c--ccccCCcHHH
Q 008744 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-G--ESFYNPYIPG 281 (555)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~-~--es~~~~~~~~ 281 (555)
...+| +++++.+...|++++++|||+||.+ . +..|.+.+++
T Consensus 86 ------------~g~~p------------------------~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~ 129 (564)
T 3kfl_A 86 ------------QGVSP------------------------MDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQD 129 (564)
T ss_dssp ------------TTCCH------------------------HHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHH
T ss_pred ------------cCCCH------------------------HHHHHHHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHH
Confidence 00111 3467888889999999999999743 3 3367788999
Q ss_pred HHHHHHhCCCeeeecceEEEEec------------C--------------------------------------------
Q 008744 282 VIDELSKQGLVEESQGARVIFIE------------G-------------------------------------------- 305 (555)
Q Consensus 282 v~~~L~~~g~~~~~dGa~~~~~~------------g-------------------------------------------- 305 (555)
++++|.++|++|+.++..|+... |
T Consensus 130 ~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~ 209 (564)
T 3kfl_A 130 IWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDH 209 (564)
T ss_dssp HHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHC
T ss_pred HHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhC
Confidence 99999999999987655554211 0
Q ss_pred -------------------CCCCeEEEe---c-----------CCcccccchh-----HHHHHH---H---------h--
Q 008744 306 -------------------VNIPLIIVK---S-----------DGGFNYASTD-----LAALWY---R---------L-- 333 (555)
Q Consensus 306 -------------------~~~d~vl~k---s-----------DG~~tY~~~D-----iA~~~~---r---------~-- 333 (555)
...|..|.| + ++...|+.-| ++...| + +
T Consensus 210 ~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~ 289 (564)
T 3kfl_A 210 PNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHA 289 (564)
T ss_dssp TTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTT
T ss_pred CCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchh
Confidence 012334444 1 1223344334 222222 0 1
Q ss_pred -hhcCCCeEEEEeeCCccccHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHH
Q 008744 334 -NEEKAEWIIYVTDVGQQLHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 410 (555)
Q Consensus 334 -~~~~~d~iI~V~g~dq~~hf~~~~--~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~ 410 (555)
.-|+.| ++++|.||.. |..++ +++.++|++| + ..+. .+|+|. .+|+|||||+||+|++.|++++
T Consensus 290 ~~~wp~d--v~~~GkDii~-FH~~~wpa~L~a~g~~~----~-~~v~--~hg~v~-~~G~KMSKS~GNvV~p~d~i~~-- 356 (564)
T 3kfl_A 290 LNRWPAD--VHVVGKDILK-FHAIYWPAFLMSAELPL----P-ERLV--SHGWWT-KDHKKISKSLGNAFDPVEKAKE-- 356 (564)
T ss_dssp TTCCSCS--EEEEEGGGHH-HHHTHHHHHHHHTTCCC----C-SCEE--EECCEE-ETTEECCTTTTCCCCHHHHHHH--
T ss_pred hhcCccc--eEEEeecccc-hHHHHHHHHHHhCCCCC----C-cEEE--EcccEe-eCCccccccCCCCCCHHHHHHH--
Confidence 113344 8899999987 44443 6678899853 2 3333 238884 7899999999999999999998
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhc-cCCCCCccccccccccc-cCChhHHHHHHHHHHHHHHHhh
Q 008744 411 NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKS 488 (555)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~-~~~~~~~~Fd~~~~~~~-~~n~~~ylqYa~aR~~silrk~ 488 (555)
+|+|++|||+++ ....+|++||++.+.+. |++..++++|+++|+++++.+.
T Consensus 357 ---------------------------~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~ 409 (564)
T 3kfl_A 357 ---------------------------FGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINV 409 (564)
T ss_dssp ---------------------------HCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTST
T ss_pred ---------------------------cCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999 56789999999999874 7789999999999999998732
Q ss_pred CCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccccc
Q 008744 489 GKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 553 (555)
Q Consensus 489 ~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 553 (555)
. +. ++. .. ..++.+++|+..+..+++.+.+++++++|+.+++++++++..+|+||+.++
T Consensus 410 ~-g~--~p~--~~-~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~n~Y~~~~k 468 (564)
T 3kfl_A 410 N-GM--WPE--PA-EYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENA 468 (564)
T ss_dssp T-SB--CCC--CC-CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-Cc--CCC--CC-CCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 21 111 11 125778899999999999999999999999999999999999999998765
No 7
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=2.8e-38 Score=340.37 Aligned_cols=308 Identities=14% Similarity=0.191 Sum_probs=240.9
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008744 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
.+++|.+++|||||+|++||||+|++|+||+|+|+|++.||+|..+++++|+|..+-.
T Consensus 19 ~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~---------------------- 76 (461)
T 1li5_A 19 HAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIK---------------------- 76 (461)
T ss_dssp STTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHH----------------------
T ss_pred CCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHH----------------------
Confidence 4677999999999999999999999999999999999999999999999999854321
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eee-cccccCCcHHHHH
Q 008744 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEK-GESFYNPYIPGVI 283 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-~~~-~es~~~~~~~~v~ 283 (555)
++.+ .|. .|+++++.+.+.|+++|++|||.+ +++ .+|.|.+.+.+++
T Consensus 77 ------~A~~--------------------~g~-----~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i 125 (461)
T 1li5_A 77 ------RANE--------------------NGE-----SFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELT 125 (461)
T ss_dssp ------HHHH--------------------TTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHH
T ss_pred ------HHHH--------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHH
Confidence 1110 121 267889999999999999999998 765 4577888899999
Q ss_pred HHHHhCCCeeee-cceEEEEec---------C-------------------CCCCeEEEec--CCcccccch--------
Q 008744 284 DELSKQGLVEES-QGARVIFIE---------G-------------------VNIPLIIVKS--DGGFNYAST-------- 324 (555)
Q Consensus 284 ~~L~~~g~~~~~-dGa~~~~~~---------g-------------------~~~d~vl~ks--DG~~tY~~~-------- 324 (555)
+.|.++|++|+. +|++||.++ | +..|+++.|+ +|.++|.++
T Consensus 126 ~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgW 205 (461)
T 1li5_A 126 EQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGW 205 (461)
T ss_dssp HHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECS
T ss_pred HHHHHCCCEEEecCCCEEEecccccccccccCCCHHHhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCcCCCc
Confidence 999999999998 999999753 1 0137888886 788888652
Q ss_pred --hHHHHHHHhhhcCCCeEEEEeeCCccc-cHHHHHHHHHH-cCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCcc
Q 008744 325 --DLAALWYRLNEEKAEWIIYVTDVGQQL-HFDMVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (555)
Q Consensus 325 --DiA~~~~r~~~~~~d~iI~V~g~dq~~-hf~~~~~~l~~-lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v 400 (555)
.+.+...++ ++....|++.|.|+.. |.....+.+.+ +|.+ ++..+.|. |+|+. +|+|||||+||+|
T Consensus 206 hiecsam~~~~--lg~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~~-----~~~~~~h~--g~v~~-~G~KMSKS~GN~v 275 (461)
T 1li5_A 206 HIECSAMNCKQ--LGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQ-----YVNYWMHS--GMVMV-DREKMSKSLGNFF 275 (461)
T ss_dssp SHHHHHHHHHH--HCSSEEEEECBGGGTTTHHHHHHHHHHHHSSSC-----CEEEECCB--CCEEE-TTBCCCGGGTCCC
T ss_pred cchhHHHHHHH--hCCCceEEeccCccCchHHHHHHHHHHHhcCCC-----CCcEEEEe--eEEEE-CCeEccccCCCcc
Confidence 122222332 4555667788998653 43333333444 4773 45567776 66774 7999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHH
Q 008744 401 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHAR 480 (555)
Q Consensus 401 ~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR 480 (555)
++.|++++ +|++++|||+|+.++.++++|+++.+.+. ++++.|
T Consensus 276 ~~~dll~~-----------------------------~g~dalR~~ll~~~~~~~~~fs~~~l~~~--------~~~l~r 318 (461)
T 1li5_A 276 TVRDVLKY-----------------------------YDAETVRYFLMSGHYRSQLNYSEENLKQA--------RAALER 318 (461)
T ss_dssp BHHHHHTT-----------------------------SCHHHHHHHHHSSCTTSCEEECHHHHHHH--------HHHHHH
T ss_pred ChhHHhhh-----------------------------CCHHHHHHHHHcCCcCCCCCCCHHHHHHH--------HHHHHH
Confidence 99999997 79999999999988899999999988654 677899
Q ss_pred HHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHH-HhcchHHHHHHHHHHHHHHhccccc
Q 008744 481 ICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL-TNLLPNVVCEYLYNLSEYFTRFYSN 551 (555)
Q Consensus 481 ~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~-~~~~p~~l~~yl~~La~~fn~fY~~ 551 (555)
+.+++++.... + .. + .+..+++.+.+++ ++++++.++.+|++|+..+|+||++
T Consensus 319 l~n~~~~~~~~---~--------~~--d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~ 372 (461)
T 1li5_A 319 LYTALRGTDKT---V--------AP--A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE 372 (461)
T ss_dssp HHHHHTTCCTT---S--------CC--C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC---C--------CH--H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999765311 0 01 1 3567888999999 8999999999999999999999863
No 8
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=3.3e-36 Score=333.01 Aligned_cols=330 Identities=13% Similarity=0.141 Sum_probs=246.2
Q ss_pred CCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHH
Q 008744 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (555)
Q Consensus 125 ~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (555)
++.+++.|--.-|+|||++||||+|++++||+|+|+++..||+|.....++|+|.++...+...
T Consensus 15 ~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---------------- 78 (560)
T 3h99_A 15 QVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---------------- 78 (560)
T ss_dssp --CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH----------------
T ss_pred CCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHh----------------
Confidence 3456777767778899999999999999999999999999999999999999999875443110
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eecc--cccCCcHHH
Q 008744 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGE--SFYNPYIPG 281 (555)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~e--s~~~~~~~~ 281 (555)
..+ ++++++.+.+.|++++++|||.+| +..+ ..|.+.+++
T Consensus 79 -------------g~~------------------------~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~ 121 (560)
T 3h99_A 79 -------------GIT------------------------PEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSEL 121 (560)
T ss_dssp -------------TSC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHH
T ss_pred -------------CCC------------------------HHHHHHHHHHHHHHHHHHcCCCCCCceeCCCHHHHHHHHH
Confidence 011 134567777889999999999996 3333 467778999
Q ss_pred HHHHHHhCCCeeeecceEEEEec-----------------------C---------------------------------
Q 008744 282 VIDELSKQGLVEESQGARVIFIE-----------------------G--------------------------------- 305 (555)
Q Consensus 282 v~~~L~~~g~~~~~dGa~~~~~~-----------------------g--------------------------------- 305 (555)
++++|.++|++|+.++.+|+... |
T Consensus 122 ~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~ 201 (560)
T 3h99_A 122 IYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSE 201 (560)
T ss_dssp HHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEE
T ss_pred HHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCChhhhcCCccccCCCCceEEecc
Confidence 99999999999999888887321 0
Q ss_pred ------------------------------------CCCCeEEEecC---Cc--------ccccchh--HHHH--H--HH
Q 008744 306 ------------------------------------VNIPLIIVKSD---GG--------FNYASTD--LAAL--W--YR 332 (555)
Q Consensus 306 ------------------------------------~~~d~vl~ksD---G~--------~tY~~~D--iA~~--~--~r 332 (555)
...|..|.|+. |. ..|+.-| ++|. . |.
T Consensus 202 ~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~ 281 (560)
T 3h99_A 202 HFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLC 281 (560)
T ss_dssp EEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCCCceEEeCcccchhHHHHHHHHh
Confidence 11233344443 33 1233222 2221 0 10
Q ss_pred --------hh-hcCCC---eEEEEeeCCccccHH-HHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCc
Q 008744 333 --------LN-EEKAE---WIIYVTDVGQQLHFD-MVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (555)
Q Consensus 333 --------~~-~~~~d---~iI~V~g~dq~~hf~-~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~ 399 (555)
+. -|+.| .+++|+|.||..+.. ...+++.++|+.+ ...+ +.+|+|+. +|+|||||+||+
T Consensus 282 ~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~~~-----p~~v--~~hg~v~~-~G~KMSKS~GNv 353 (560)
T 3h99_A 282 DKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFRK-----PSNL--FVHGYVTV-NGAKMSKSRGTF 353 (560)
T ss_dssp HHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBCC-----CSEE--EEECCEEE-TTEECCTTTTCC
T ss_pred hccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCCCC-----CcEE--EEEeEEEe-CCeeccccCCCc
Confidence 10 13344 679999999986333 3336678899842 2222 34588886 899999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCC-C-CCccccccccccc-cCChhHHHHH
Q 008744 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-L-TNYTFSFDQMLND-KGNTAVYLLY 476 (555)
Q Consensus 400 v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~-~~~~Fd~~~~~~~-~~n~~~ylqY 476 (555)
|++.|++++ +|+||+|||+++..+ . +|++||++.+.+. +.+....++|
T Consensus 354 v~p~d~i~~-----------------------------~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n 404 (560)
T 3h99_A 354 IKASTWLNH-----------------------------FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN 404 (560)
T ss_dssp CBHHHHHHH-----------------------------SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTH
T ss_pred CCHHHHHHH-----------------------------cCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 999999998 899999999999876 4 7999999998763 5566778888
Q ss_pred HHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccccc
Q 008744 477 AHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 553 (555)
Q Consensus 477 a~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 553 (555)
+++|+++++++...+. ++ . .+.+++|+..+..+++.+.+++++++|+.+++++++++..+|+||+.++
T Consensus 405 ~~~R~~~~~~~~~~~~--~~----~---~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~~k 472 (560)
T 3h99_A 405 LASRNAGFINKRFDGV--LA----S---ELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQA 472 (560)
T ss_dssp HHHTTHHHHHHHSTTB--CC----S---SCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCC--CC----C---ccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999998864321 11 1 1346789999999999999999999999999999999999999998765
No 9
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=1.5e-36 Score=331.46 Aligned_cols=325 Identities=17% Similarity=0.160 Sum_probs=239.4
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHH
Q 008744 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (555)
.+++.|...+|||||++||||+|+++++|+|+|+++..||+|.++..++|+|..+..-+
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a--------------------- 62 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKA--------------------- 62 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHH---------------------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHH---------------------
Confidence 46899999999999999999999999999999999999999999999999886543111
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee---cccccCCcHHHHH
Q 008744 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPGVI 283 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~---~es~~~~~~~~v~ 283 (555)
.+. ..+ ++++++.+.+.|++++++|||.+|++ ++..|.+.+++++
T Consensus 63 -------~~~-g~~------------------------~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~ 110 (497)
T 2csx_A 63 -------EEL-GIS------------------------PKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVF 110 (497)
T ss_dssp -------HHS-SSC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred -------HHc-CCC------------------------HHHHHHHHHHHHHHHHHHhCCcCCCCccCCCHHHHHHHHHHH
Confidence 000 111 13467888899999999999999743 3445778899999
Q ss_pred HHHHhCCCeeee--cceEEEEec-----------------C---------------------------------------
Q 008744 284 DELSKQGLVEES--QGARVIFIE-----------------G--------------------------------------- 305 (555)
Q Consensus 284 ~~L~~~g~~~~~--dGa~~~~~~-----------------g--------------------------------------- 305 (555)
+.|.++|++|+. .|.+|+..+ |
T Consensus 111 ~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~ 190 (497)
T 2csx_A 111 EECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRR 190 (497)
T ss_dssp HHHHHTTCEEEEEC---------------------------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHH
T ss_pred HHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHH
Confidence 999999999986 455544321 0
Q ss_pred ---------CCCCeEEEe--cC---Cccccc--------chh-----HHHHHHH-hhhcCCCeEEEEeeCCccc-cHHHH
Q 008744 306 ---------VNIPLIIVK--SD---GGFNYA--------STD-----LAALWYR-LNEEKAEWIIYVTDVGQQL-HFDMV 356 (555)
Q Consensus 306 ---------~~~d~vl~k--sD---G~~tY~--------~~D-----iA~~~~r-~~~~~~d~iI~V~g~dq~~-hf~~~ 356 (555)
...|..+.| ++ |.+... .-| ++....+ ...+++| +++.|.||.. |....
T Consensus 191 ~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~~~~~~~p~d--i~~~G~D~~~~H~~~~ 268 (497)
T 2csx_A 191 NEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWPAD--LHLVGKDILRFHTVYW 268 (497)
T ss_dssp HHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTTTHHHHCSCS--CEEEEGGGHHHHHTHH
T ss_pred HHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccCCCcchhhCCce--EEEeecchhHhHHHHH
Confidence 002334444 33 433321 111 1100000 0124666 7889999976 22222
Q ss_pred HHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 008744 357 FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAE 436 (555)
Q Consensus 357 ~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~ 436 (555)
.+.+.++|+. +...+.|. |+|+. +|+|||||+||+|++.|++++
T Consensus 269 ~a~l~~~g~~-----~~~~~~~~--G~v~~-~G~KMSKS~GN~i~~~dli~~---------------------------- 312 (497)
T 2csx_A 269 PAFLMSLGYE-----LPKKVFAH--GWWTV-EGKKMSKTLGNVVDPYEVVQE---------------------------- 312 (497)
T ss_dssp HHHHHHHTCC-----CCSCEEEE--CCEES-SSSBCCTTTTCCCCHHHHHHH----------------------------
T ss_pred HHHHHHcCCC-----CCcEEEEC--cEEEe-CCceeCCcCCCCCCHHHHHHH----------------------------
Confidence 2556778984 34557776 77886 899999999999999999998
Q ss_pred hhhhhhHHHhhhc-cCCCCCccccccccccc-cCChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHH
Q 008744 437 AVGYGAAKYFDLK-NNRLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLH 514 (555)
Q Consensus 437 ~vg~~airy~~L~-~~~~~~~~Fd~~~~~~~-~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~ 514 (555)
+|+|++||++++ ..+.+|++|+++.+... +.+..++++|+++|++++++++..+. ++ ++.++.|+..
T Consensus 313 -~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~--~~--------~~~d~~l~~~ 381 (497)
T 2csx_A 313 -YGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGE--VS--------GARDEEYAKI 381 (497)
T ss_dssp -HCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTC--BC--------CCCCTTHHHH
T ss_pred -CCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CC--------chhHHHHHHH
Confidence 799999999998 57899999999999875 44567899999999999998864221 10 2235678999
Q ss_pred HhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccccc
Q 008744 515 LLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 553 (555)
Q Consensus 515 l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 553 (555)
+..+++.+.+++++++|+.++.++++++..+|.|++.++
T Consensus 382 l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k 420 (497)
T 2csx_A 382 AQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQ 420 (497)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999997653
No 10
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=4.1e-36 Score=328.25 Aligned_cols=324 Identities=16% Similarity=0.120 Sum_probs=238.7
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHH
Q 008744 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (555)
+++.|...+|||+|++||||+|++++||+|+|+++..||+|.+...++|+|..+..-+
T Consensus 3 ~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a---------------------- 60 (500)
T 2d5b_A 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAA---------------------- 60 (500)
T ss_dssp CEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHH----------------------
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHH----------------------
Confidence 5799999999999999999999999999999999999999999998888876442211
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee-c--ccccCCcHHHHHH
Q 008744 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-G--ESFYNPYIPGVID 284 (555)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~-~--es~~~~~~~~v~~ 284 (555)
.+. ..+ ++++++.+.+.|++++++|||.+|++ . +..|.+.++++++
T Consensus 61 ------~~~-g~~------------------------~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~ 109 (500)
T 2d5b_A 61 ------QAA-GED------------------------PKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLK 109 (500)
T ss_dssp ------HHH-TSC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHH
T ss_pred ------HHc-CCC------------------------HHHHHHHHHHHHHHHHHHhCCcCCCCcccCCHHHHHHHHHHHH
Confidence 100 111 23467888899999999999999743 2 3447788999999
Q ss_pred HHHhCCCeeeec--ceEEEEec-----CC---------------------------------------------------
Q 008744 285 ELSKQGLVEESQ--GARVIFIE-----GV--------------------------------------------------- 306 (555)
Q Consensus 285 ~L~~~g~~~~~d--Ga~~~~~~-----g~--------------------------------------------------- 306 (555)
.|.++|++|+.+ |.+|+.++ ++
T Consensus 110 ~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~ 189 (500)
T 2d5b_A 110 KVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNE 189 (500)
T ss_dssp HHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHH
T ss_pred HHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHH
Confidence 999999999863 44443211 10
Q ss_pred --------CCCeEEEe--cC---Cccc--------c--cchhH------HHHHHH-hh-hcCCCeEEEEeeCCccccHHH
Q 008744 307 --------NIPLIIVK--SD---GGFN--------Y--ASTDL------AALWYR-LN-EEKAEWIIYVTDVGQQLHFDM 355 (555)
Q Consensus 307 --------~~d~vl~k--sD---G~~t--------Y--~~~Di------A~~~~r-~~-~~~~d~iI~V~g~dq~~hf~~ 355 (555)
..|..+.| ++ |.+. | +...+ +++... +. .++.| ||+.|.||.. |..
T Consensus 190 ~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~d--i~~~G~D~~~-fh~ 266 (500)
T 2d5b_A 190 VLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHA--WHLIGKDILK-PHA 266 (500)
T ss_dssp HHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGE--EEEEEGGGHH-HHH
T ss_pred HHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcCCCCCchHHHcCCCe--EEEEeechhh-hHH
Confidence 02333444 23 4321 1 11111 111000 11 14454 8999999987 555
Q ss_pred HH--HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 008744 356 VF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQ 433 (555)
Q Consensus 356 ~~--~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~ 433 (555)
++ +.+.++|++ +...+.|. |+|+.++|+|||||+||+|++.|++++
T Consensus 267 ~~~~a~~~~~g~~-----~~~~v~~~--G~v~~~~G~KMSKS~GN~i~p~d~i~~------------------------- 314 (500)
T 2d5b_A 267 VFWPTMLKAAGIP-----MYRHLNVG--GFLLGPDGRKMSKTLGNVVDPFALLEK------------------------- 314 (500)
T ss_dssp THHHHHHHHHTCC-----CCSEEEEE--CCEECTTSSCCCTTTTCCCCHHHHHHH-------------------------
T ss_pred HHHHHHHHHcCCC-----CCcEEEEC--ceEEeCCCCcccccCCCCCCHHHHHHh-------------------------
Confidence 44 556778984 34456766 889987999999999999999999998
Q ss_pred HHHhhhhhhHHHhhhc-cCCCCCccccccccccccC-ChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHH
Q 008744 434 TAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDKG-NTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERAL 511 (555)
Q Consensus 434 ~a~~vg~~airy~~L~-~~~~~~~~Fd~~~~~~~~~-n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L 511 (555)
+|+|++||++++ ..+.+|++|+++.+.+..+ ...+.++++++|+.+++++...+. ++ .+.++.|
T Consensus 315 ----~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~--~~--------~~~~~~l 380 (500)
T 2d5b_A 315 ----YGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGR--IP--------EPVAGEE 380 (500)
T ss_dssp ----HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTB--CC--------CCCCCGG
T ss_pred ----cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CC--------chhHHHH
Confidence 799999999998 5789999999999877533 334567788899999988764221 11 0112568
Q ss_pred HHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccccc
Q 008744 512 GLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 553 (555)
Q Consensus 512 ~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 553 (555)
+..+..+++.+.+++++++|+.++.++++++..+|.||+.++
T Consensus 381 ~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k 422 (500)
T 2d5b_A 381 LAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKK 422 (500)
T ss_dssp GGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888999999999999999999999999999999999998653
No 11
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=1.3e-35 Score=326.02 Aligned_cols=330 Identities=16% Similarity=0.146 Sum_probs=241.6
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008744 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
..+++.|--+-|||+|++||||+|++++||+|+|+++..||+|.++..++|+|..+..-+.
T Consensus 10 ~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~------------------- 70 (524)
T 2x1l_A 10 GSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAA------------------- 70 (524)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHH-------------------
T ss_pred CCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHH-------------------
Confidence 4567888888899999999999999999999999999999999999999998865432110
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eecccc--cCCcHHHH
Q 008744 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESF--YNPYIPGV 282 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~es~--~~~~~~~v 282 (555)
+ .|.+ ++++++.+...|++++++|||.+| +..++. |.+.++++
T Consensus 71 ---------~--------------------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~ 116 (524)
T 2x1l_A 71 ---------K--------------------EGIP-----AAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAI 116 (524)
T ss_dssp ---------H--------------------HTSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHH
T ss_pred ---------H--------------------cCCC-----HHHHHHHHHHHHHHHHHHcCCcCCCCeecCCHHHHHHHHHH
Confidence 0 0111 244678888999999999999996 544444 77889999
Q ss_pred HHHHHhCCCeeeecceEEEEec------------C--------CCC-CeEEEec--------------------------
Q 008744 283 IDELSKQGLVEESQGARVIFIE------------G--------VNI-PLIIVKS-------------------------- 315 (555)
Q Consensus 283 ~~~L~~~g~~~~~dGa~~~~~~------------g--------~~~-d~vl~ks-------------------------- 315 (555)
++.|.++|++|+.++.+|+... | ..+ +.+.+.+
T Consensus 117 ~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~ 196 (524)
T 2x1l_A 117 WKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIG 196 (524)
T ss_dssp HHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEE
T ss_pred HHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCeeC
Confidence 9999999999999998887432 1 001 1111111
Q ss_pred ---------------------------CCcc--------cccc--hhHHHHH---H------Hh-hhcCCCeEEEEeeCC
Q 008744 316 ---------------------------DGGF--------NYAS--TDLAALW---Y------RL-NEEKAEWIIYVTDVG 348 (555)
Q Consensus 316 ---------------------------DG~~--------tY~~--~DiA~~~---~------r~-~~~~~d~iI~V~g~d 348 (555)
=|.+ .|+. +.+++.. | .+ ..+++| |++.|.|
T Consensus 197 p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~d--i~~~G~D 274 (524)
T 2x1l_A 197 PDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPAD--LHMIGKD 274 (524)
T ss_dssp SHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCS--EEEEEGG
T ss_pred CHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCe--EEEEeec
Confidence 0110 1110 1111100 0 00 013445 7788888
Q ss_pred ccccHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCC
Q 008744 349 QQLHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEW 426 (555)
Q Consensus 349 q~~hf~~~~--~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~ 426 (555)
|. .|..++ +.+.++|+++ +...+.| |+|+. +|+|||||+||+|++.|++++
T Consensus 275 ~~-~fh~~~~~a~l~~~g~~~----~~~v~~h---G~v~~-~G~KMSKS~GN~v~p~d~i~~------------------ 327 (524)
T 2x1l_A 275 II-RFHTVYWPAFLMSAGLPL----PKRIFAH---GWLLN-RGEKMSKSIGNVVDPVNLVDT------------------ 327 (524)
T ss_dssp GH-HHHHTHHHHHHHHHTCCC----CSCEEEE---CCEEE-CSCSEETTTEESSCHHHHHHH------------------
T ss_pred hh-HhHHHHHHHHHHHCCCCC----CcEEEEC---cEEEe-CCcccCCcCCCCCCHHHHHHH------------------
Confidence 87 355443 4566789842 2233444 77885 799999999999999999998
Q ss_pred CHHHHHHHHHhhhhhhHHHhhhc-cCCCCCccccccccccc-cCChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCC
Q 008744 427 TEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLD 504 (555)
Q Consensus 427 ~~~~~~~~a~~vg~~airy~~L~-~~~~~~~~Fd~~~~~~~-~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~ 504 (555)
+|+|++||++++ ..+.+|++||++.+.+. +.+..+.++++..|+.+++++...+. ++. ....
T Consensus 328 -----------~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~--~~~---~~~~ 391 (524)
T 2x1l_A 328 -----------FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAA--VPD---PGEF 391 (524)
T ss_dssp -----------HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTB--CCC---CCCC
T ss_pred -----------cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCC---cccc
Confidence 799999999999 67799999999998765 34566678888999999988754321 111 1123
Q ss_pred cHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccccc
Q 008744 505 HADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 553 (555)
Q Consensus 505 ~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 553 (555)
++.+++|+..+..+++.+.+++++++|+.++.++++++..+|.||+.++
T Consensus 392 ~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k 440 (524)
T 2x1l_A 392 TDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQE 440 (524)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5778899999999999999999999999999999999999999998764
No 12
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=8.9e-32 Score=286.59 Aligned_cols=301 Identities=13% Similarity=0.072 Sum_probs=205.2
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHH
Q 008744 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (555)
+++|.++.|+|+|+|++||||+|++++||+|+|+|+..||+|..+++++|+|..+...+.
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~-------------------- 96 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAE-------------------- 96 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHH--------------------
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHH--------------------
Confidence 567899999999999999999999999999999999999999999999999864422210
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCe-eee-ecccccCCcHHHHHH
Q 008744 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LEE-KGESFYNPYIPGVID 284 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~-f~~-~~es~~~~~~~~v~~ 284 (555)
+ .| ..|+++++.+.+.|++++++|||. +|+ ..++.|.+.++++++
T Consensus 97 --------~--------------------~g-----~~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~ 143 (414)
T 3c8z_A 97 --------R--------------------DG-----IDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVE 143 (414)
T ss_dssp --------H--------------------HT-----CCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHH
T ss_pred --------H--------------------cC-----CCHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHH
Confidence 0 01 124567888899999999999999 874 456668778999999
Q ss_pred HHHhCCCeeeec----ceEEEEecC-----C----C-----------------------CCeEEEe--cCCcccccch--
Q 008744 285 ELSKQGLVEESQ----GARVIFIEG-----V----N-----------------------IPLIIVK--SDGGFNYAST-- 324 (555)
Q Consensus 285 ~L~~~g~~~~~d----Ga~~~~~~g-----~----~-----------------------~d~vl~k--sDG~~tY~~~-- 324 (555)
.|.++|++|+.+ |.+||+++. . + .|+++.| ..|.+.|.++
T Consensus 144 ~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g 223 (414)
T 3c8z_A 144 KLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFG 223 (414)
T ss_dssp HHHHHTSEEECSCSSCCCEEECTTSSTTTTTTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTC
T ss_pred HHHHCCCEEeccCCcCCCEEEEchhhhhhHhhcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCC
Confidence 999999999988 999998752 1 1 1223333 2333333211
Q ss_pred --------hHHHHHHHhhhcCCCeEEEEeeCCccc-cHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeeEEECCCCcccee
Q 008744 325 --------DLAALWYRLNEEKAEWIIYVTDVGQQL-HFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRT 394 (555)
Q Consensus 325 --------DiA~~~~r~~~~~~d~iI~V~g~dq~~-hf~~~~~~l~~l-G~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSk 394 (555)
++++...++ ++...-|++.|.||.. |+....+.+.++ |.. ++...+.|. |+|. .+|+||||
T Consensus 224 ~g~pgWhiec~a~~~~~--~g~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~----~~~~~~~h~--g~v~-~~G~KMSK 294 (414)
T 3c8z_A 224 RGRPGWHVECSAIALTR--IGTGLDIQGGGSDLIFPHHEYSAAHAESVTGER----RFARHYVHT--GMIG-WDGHKMSK 294 (414)
T ss_dssp SEEECHHHHHHHHHHHH--TCSCEEEEEEEGGGTTTHHHHHHHHHHHHHCCS----CSEEEEEEE--CCBC---------
T ss_pred CCCCCccchhHHHHHHh--cCCCceEEEeccccccHHHHHHHHHHHHhcCCC----CcCeEEEEc--CEEe-cCCeEccc
Confidence 111111222 2222336677999765 555544555655 763 233345554 6777 47999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHH
Q 008744 395 RFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYL 474 (555)
Q Consensus 395 R~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~yl 474 (555)
|+||+|++.|+++++ +|++++|||+++..+.++++|+++.+.+...
T Consensus 295 S~GN~v~~~~ll~~g----------------------------~g~D~lR~~ll~~~~~~d~~fs~~~l~~~~~------ 340 (414)
T 3c8z_A 295 SRGNLVLVSQLRAQG----------------------------VDPSAIRLGLFSGHYREDRFWSNEVLDEANA------ 340 (414)
T ss_dssp -----CBHHHHHHTT----------------------------CCHHHHHHHHHTSCTTSCBCCCHHHHHHHHH------
T ss_pred ccCCcCCHHHHhhcc----------------------------CCcchheeEEEecCcCCCCCcCHHHHHHHHH------
Confidence 999999999999973 6999999999998889999999998765322
Q ss_pred HHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHH-HhcchHHHHHHHHHHHHHHhc
Q 008744 475 LYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL-TNLLPNVVCEYLYNLSEYFTR 547 (555)
Q Consensus 475 qYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~-~~~~p~~l~~yl~~La~~fn~ 547 (555)
.+.|+.+.+++.. .+ .+..+.+.+.+++ ++++.+.++.-+++++...|+
T Consensus 341 --~l~~l~n~~~~~~---------~~-------------~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~ 390 (414)
T 3c8z_A 341 --RLARWRSATALPE---------AP-------------DATDVIARVRQYLADDLDTPKALAALDGWCTDALS 390 (414)
T ss_dssp --HHHHHHHHHTSSC---------BS-------------CCHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcc---------ch-------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 2345555554321 00 0124556778888 799999999999999999987
No 13
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.97 E-value=1.1e-30 Score=295.47 Aligned_cols=330 Identities=12% Similarity=0.106 Sum_probs=239.9
Q ss_pred ceEEEEecCCCCCCCCcccchhh-hhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHH
Q 008744 128 KKAVVDFSSPNIAKEMHVGHLRS-TIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~-~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (555)
++++|....|||+|++||||+|+ ++++|+++|++|..||+|......+++|..+..-+..
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k------------------- 62 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK------------------- 62 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-------------------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHH-------------------
Confidence 57899999999999999999999 9999999999999999999999999999866433210
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec---ccccCCcHHHHH
Q 008744 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVI 283 (555)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~---es~~~~~~~~v~ 283 (555)
. ..+ ++++++.+...|++++++|||+|||+. +..|...+++++
T Consensus 63 ------~----G~~------------------------p~e~~~~~~~~~~~~~~~lgis~D~~~rT~d~~~~~~v~~~f 108 (722)
T 1rqg_A 63 ------E----GRS------------------------PREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFF 108 (722)
T ss_dssp ------H----TCC------------------------HHHHHHHHHHHHHHHHHHHTCCCSEEEETTSHHHHHHHHHHH
T ss_pred ------c----CCC------------------------HHHHHHHHHHHHHHHHHHhCCCCCCCeeCCCHHHHHHHHHHH
Confidence 0 011 245678888999999999999998653 345667899999
Q ss_pred HHHHhCCCeeeecceEEEEec-----------------------CC----------------------------------
Q 008744 284 DELSKQGLVEESQGARVIFIE-----------------------GV---------------------------------- 306 (555)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~-----------------------g~---------------------------------- 306 (555)
..|.++|++|+.+..+++... |+
T Consensus 109 ~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qw 188 (722)
T 1rqg_A 109 LKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHY 188 (722)
T ss_dssp HHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEE
T ss_pred HHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcccccChhhccCCcccCCCcEeEEEEeccE
Confidence 999999999986655554321 00
Q ss_pred -----------------------------------CCCeEEEe--------------cCCcccccchh--HHHHH----H
Q 008744 307 -----------------------------------NIPLIIVK--------------SDGGFNYASTD--LAALW----Y 331 (555)
Q Consensus 307 -----------------------------------~~d~vl~k--------------sDG~~tY~~~D--iA~~~----~ 331 (555)
..|.-|-| .+|..+|+.-| +.|.. |
T Consensus 189 F~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~ 268 (722)
T 1rqg_A 189 YIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEH 268 (722)
T ss_dssp EECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHH
T ss_pred EEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCccccCccccCCCCCEEEEEeccccchhhhHHHH
Confidence 01111212 12334455444 33321 1
Q ss_pred H--------hh-hcCC-C---eEEEEeeCCccccHHHHH-HHHHHcC----------CCCCCCCCCCcEEEEEeeEEECC
Q 008744 332 R--------LN-EEKA-E---WIIYVTDVGQQLHFDMVF-SAAKRAG----------WLSADDSTYPKASHVGFGLVLGE 387 (555)
Q Consensus 332 r--------~~-~~~~-d---~iI~V~g~dq~~hf~~~~-~~l~~lG----------~~~~~~~~~~~~~Hv~~g~v~~~ 387 (555)
. +. -|+. | ..+++.|.|+..++...+ +.+.++| +. ++..+.|. |+|+.
T Consensus 269 ~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~-----~Pk~v~~h--G~v~~- 340 (722)
T 1rqg_A 269 FKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWN-----LPYDIPAN--EYLTL- 340 (722)
T ss_dssp HHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBC-----CCSBCCEE--CCEEE-
T ss_pred HhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCcccccccCCC-----CCCEEEEe--eeEEe-
Confidence 1 11 1321 2 457899999865433333 4456655 42 23455554 77886
Q ss_pred CCccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhcc-CCCCCccccccccccc
Q 008744 388 DGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLND 466 (555)
Q Consensus 388 ~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~-~~~~~~~Fd~~~~~~~ 466 (555)
+|+|||||+||+|++.|++++ +|+|++|||+++. ...+|++|+++.+.+.
T Consensus 341 ~G~KMSKS~GNvV~p~d~i~~-----------------------------ygaDalR~~ll~~~~~~~D~~fs~~~~~~~ 391 (722)
T 1rqg_A 341 EGKKFSTSRNWAIWVHEFLDV-----------------------------FPADYLRYYLTTIMPETRDSDFSFSDFKVR 391 (722)
T ss_dssp TTEECBTTTTBSCBHHHHTTT-----------------------------SCHHHHHHHHHHTCCSSSCEEECHHHHHHH
T ss_pred CCeeeeeeCCCcCCHHHHHHh-----------------------------cCchHHHHHHHhcCCCCCCCccCHHHHHHH
Confidence 899999999999999999997 8999999999998 5689999999988764
Q ss_pred -cCChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 008744 467 -KGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYF 545 (555)
Q Consensus 467 -~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~f 545 (555)
|.+...-+.+..+|+.+++++...+. ++. ...+ .+.+++|+..+..+++.+.+++++++++.++..+++++...
T Consensus 392 ~n~~l~~~l~N~~~R~~~~~~k~~~~~--~~~--~~~~-~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~ 466 (722)
T 1rqg_A 392 INEELVNNLGNFVHRALTFVNRYFDGV--VPE--RGEL-DELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFG 466 (722)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHHSTTB--CCC--CCCC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC--CCC--cccC-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 33444444455589999998864321 111 1122 46788999999999999999999999999999999999999
Q ss_pred hcccccc
Q 008744 546 TRFYSNC 552 (555)
Q Consensus 546 n~fY~~~ 552 (555)
|.|++.+
T Consensus 467 n~Yi~~~ 473 (722)
T 1rqg_A 467 NRYFDHK 473 (722)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9998764
No 14
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.97 E-value=2.9e-30 Score=275.68 Aligned_cols=305 Identities=18% Similarity=0.214 Sum_probs=214.5
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008744 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
.+++|.++.|+|||++++||||+|+++++|+|+|+|+..||+|..+.+++|+|..+-.-
T Consensus 22 ~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~--------------------- 80 (462)
T 3tqo_A 22 ESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKR--------------------- 80 (462)
T ss_dssp STTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHH---------------------
T ss_pred CCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHH---------------------
Confidence 46789999999999999999999999999999999999999999999999998644211
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-ee-cccccCCcHHHHH
Q 008744 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EK-GESFYNPYIPGVI 283 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~-~es~~~~~~~~v~ 283 (555)
+.+ .|. .|+++++.+.+.|.+++++|||.++ +. ..+.|.+.+.+++
T Consensus 81 -------A~~--------------------~g~-----~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i 128 (462)
T 3tqo_A 81 -------AGE--------------------NKE-----SPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLI 128 (462)
T ss_dssp -------HHH--------------------TTS-----CHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHH
T ss_pred -------HHH--------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHH
Confidence 110 011 1567888999999999999999995 43 5677888899999
Q ss_pred HHHHhCCCeeee-cceEEEEec-----C-----------------------CCCCeEEEec--CCcccccch--------
Q 008744 284 DELSKQGLVEES-QGARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYAST-------- 324 (555)
Q Consensus 284 ~~L~~~g~~~~~-dGa~~~~~~-----g-----------------------~~~d~vl~ks--DG~~tY~~~-------- 324 (555)
+.|.++|++|+. +|.+||.++ | +..|++|.|. +|.|.+.++
T Consensus 129 ~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGW 208 (462)
T 3tqo_A 129 QKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGW 208 (462)
T ss_dssp HHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCSCC------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECH
T ss_pred HHHHHCCCEEEecCCcEEeccccccccccccCCChHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCC
Confidence 999999999998 799999764 1 1136778775 566666552
Q ss_pred --hHHHHHHHhhhcCCCeEEEEeeCCccc-cHHHHHHHHHH-cCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCcc
Q 008744 325 --DLAALWYRLNEEKAEWIIYVTDVGQQL-HFDMVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (555)
Q Consensus 325 --DiA~~~~r~~~~~~d~iI~V~g~dq~~-hf~~~~~~l~~-lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v 400 (555)
.+++...+. .|...-|++.|.|+.. |.....+..++ .|. +++..+.|. |+|. .+|+|||||.||+|
T Consensus 209 HiEcsam~~~~--lG~~~dih~gG~Dl~FpHheneiaqs~a~~g~-----p~~~~w~H~--g~v~-~~G~KMSKSlGN~i 278 (462)
T 3tqo_A 209 HIECSAMSSSI--LGQPFDIHGGGLDLKFPHHENEIAQSEAGEEK-----PFVKLWMHA--GLLE-INKEKMSKSLGNII 278 (462)
T ss_dssp HHHHHHHHHHH--HCSSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-----CCEEEEEEE--CCEE-ETTEECCTTTTCCC
T ss_pred ceehHHHHHHh--cCCCeEEEccccccccHHHHhHHHHHHHHcCC-----CcceEEEEc--cEEe-cCCcCccccCCCcc
Confidence 233222232 2333334444555432 44444444443 365 366677886 6676 68999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHH
Q 008744 401 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHAR 480 (555)
Q Consensus 401 ~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR 480 (555)
++.|++++ +|++++||++|+.++.++++|+++.+.+.. -.+.|
T Consensus 279 ~~~dll~~-----------------------------~g~dalR~~lls~~yr~~l~fs~~~l~~a~--------~~l~r 321 (462)
T 3tqo_A 279 SIREALKE-----------------------------SDVEVLRYFLLSGHYRNPLSYSKENLENGR--------LALER 321 (462)
T ss_dssp BHHHHHHH-----------------------------SCHHHHHHHHHHSCTTSCEEECHHHHHHHH--------HHHHH
T ss_pred cHHHHHhh-----------------------------cChHHhhhhhccCCCCCCcCcCHHHHHHHH--------HHHHH
Confidence 99999997 899999999999999999999999875421 23345
Q ss_pred HHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHH-hcchHHHHHHHHHHHHHHhccc
Q 008744 481 ICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFTRFY 549 (555)
Q Consensus 481 ~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~-~~~p~~l~~yl~~La~~fn~fY 549 (555)
+.+.++..... .+ + .+..+.+.+.+|++ ++.-..++..|+++++..|+..
T Consensus 322 l~~~~~~~~~~-------------~~-~-----~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~ 372 (462)
T 3tqo_A 322 FYLALRGLPVV-------------NH-E-----KTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFR 372 (462)
T ss_dssp HHHHHTTCCC-------------------------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhc-------------cc-h-----hHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhh
Confidence 55544432110 00 0 12234444555554 5666666666666666666543
No 15
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.96 E-value=9.9e-29 Score=265.02 Aligned_cols=327 Identities=16% Similarity=0.131 Sum_probs=210.2
Q ss_pred eEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHH
Q 008744 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (555)
Q Consensus 129 ~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (555)
+|-+..|+|+|+|++||||+|+.|++|+|+|+|+..||+|..+.+++|+|+|.|.- + .++++|..
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~----------D--ehddKI~~--- 106 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL----------D--DGEDKVAK--- 106 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC----------------------------
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCC----------C--CCCcHHHH---
Confidence 78899999999999999999999999999999999999999999999999986521 1 13444431
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee--cccccCCcHHHHHHHH
Q 008744 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK--GESFYNPYIPGVIDEL 286 (555)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~--~es~~~~~~~~v~~~L 286 (555)
++.+ +|. .|+++++.+...|.+++++|||.++++ ..+.|...+.++++.|
T Consensus 107 ---~A~~--------------------~g~-----~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L 158 (501)
T 3sp1_A 107 ---TARE--------------------KGL-----TVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKIL 158 (501)
T ss_dssp -----------------------------C-----CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHH
T ss_pred ---HHHH--------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHH
Confidence 1111 111 256788999999999999999999643 3577778899999999
Q ss_pred HhCCCeeeecceEEEEec-----C------------------------CCCCeEEEec-----CCcccccch--------
Q 008744 287 SKQGLVEESQGARVIFIE-----G------------------------VNIPLIIVKS-----DGGFNYAST-------- 324 (555)
Q Consensus 287 ~~~g~~~~~dGa~~~~~~-----g------------------------~~~d~vl~ks-----DG~~tY~~~-------- 324 (555)
.++|++|+.+|.+||.++ | +..|++|.|. .|.+.+.++
T Consensus 159 ~~kG~aY~~~g~Vyf~v~~f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGW 238 (501)
T 3sp1_A 159 EEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSW 238 (501)
T ss_dssp HHTTCEEEETTEEEECGGGCTTTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECH
T ss_pred HHCCCEEEeCCcEEecCCccCCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCc
Confidence 999999999999998653 1 1136777765 355555442
Q ss_pred --hHHHHHHHhhhcCCCeEEEEeeCCccc-cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccc
Q 008744 325 --DLAALWYRLNEEKAEWIIYVTDVGQQL-HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 401 (555)
Q Consensus 325 --DiA~~~~r~~~~~~d~iI~V~g~dq~~-hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~ 401 (555)
.+++...+. ++...-|++.|.|+.. |.....+..+++.-. +++..+.|. |+|. .+|+|||||.||+|+
T Consensus 239 hiEcsam~~~~--lg~~~DIH~gG~DLifpHheneiAqs~a~~g~----~~~~~w~H~--g~v~-~~G~KMSKSlGN~it 309 (501)
T 3sp1_A 239 HLECAAMNLEY--FKDALDIHLGGVDHIGVHHINEIAIAECFLNK----KWCDVFVHG--EFLI-MDYNKMSKSRGNFIT 309 (501)
T ss_dssp HHHHHHHHHHH--TTTCCCEEEEEGGGTTTHHHHHHHHHHHHHTS----CCCSEEEEE--CCEE-CC----------CCC
T ss_pred hHHHHHHHHHH--cCCCceEEeeccccccchHHHHHHHHHHccCC----CCCeEEEEe--eeEe-eCCeEccccCCCcCC
Confidence 233322333 3332237788999753 555555555554322 467778887 6787 589999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHH
Q 008744 402 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARI 481 (555)
Q Consensus 402 l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~ 481 (555)
+.|+++++ +|++++|||+|+.++.++++|+++.+.+... .+-+.+.|+
T Consensus 310 ~~dll~~g----------------------------yg~d~lR~~lls~~yr~~l~fs~~~l~~a~~----~~~~ll~rl 357 (501)
T 3sp1_A 310 VKDLEDQN----------------------------FSPLDFRYLCLTSHYRNQLKFSLDNLQASKI----ARENLINKL 357 (501)
T ss_dssp HHHHHHTT----------------------------CCHHHHHHHHHTSCTTSCEECCHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHhcC----------------------------CCHHHHHHHHHhccCCCCCccCHHHHHHHHH----hhHHHHHHH
Confidence 99999873 6999999999999999999999998754321 111224566
Q ss_pred HHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHH-hcchHHHHHHHHHHHHHHh
Q 008744 482 CSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFT 546 (555)
Q Consensus 482 ~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~-~~~p~~l~~yl~~La~~fn 546 (555)
...+++................ . ...+..+.+.+.+|++ ++.-..++..|+++++..|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~~~~ 416 (501)
T 3sp1_A 358 SYFYESLDPVDLNTLNKDLKNF-G------FSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDN 416 (501)
T ss_dssp HHHHHTCCHHHHHHHHSCTTSC-S------SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhhhcccccccccch-h------hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Confidence 6666553211000000000000 0 1123345556666665 6888888888888887654
No 16
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.96 E-value=9.7e-28 Score=264.45 Aligned_cols=328 Identities=16% Similarity=0.141 Sum_probs=227.7
Q ss_pred CCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHH
Q 008744 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (555)
Q Consensus 126 ~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (555)
..|+..|.-.=|+|||++||||+|+.++.|+|+|.++..||+|..+..++|+|..+..-+.
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~------------------- 67 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAK------------------- 67 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHH-------------------
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHH-------------------
Confidence 4567888888899999999999999999999999999999999999999999876532210
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc---cccCCcHHHH
Q 008744 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE---SFYNPYIPGV 282 (555)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~e---s~~~~~~~~v 282 (555)
+. ..+| +++++.+.+.|++.+++|||++||+.. ..|...++++
T Consensus 68 ---------k~-g~~~------------------------~e~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~ 113 (542)
T 3u1f_A 68 ---------QK-QVSP------------------------YDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKEL 113 (542)
T ss_dssp ---------HT-TSCH------------------------HHHHHHHHHHHHHHHHHHTCCCSEEEETTCHHHHHHHHHH
T ss_pred ---------Hc-CCCH------------------------HHHHHHHHHHHHHHHHHhCCccCcCccCCCHHHHHHHHHH
Confidence 00 0111 345677778899999999999998654 3466789999
Q ss_pred HHHHHhCCCeeeecceEEEEec-----------------CC-------CCCeEEEecC----------------------
Q 008744 283 IDELSKQGLVEESQGARVIFIE-----------------GV-------NIPLIIVKSD---------------------- 316 (555)
Q Consensus 283 ~~~L~~~g~~~~~dGa~~~~~~-----------------g~-------~~d~vl~ksD---------------------- 316 (555)
+..|.++|++|+....+++... |+ .+..+..++.
T Consensus 114 f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~ 193 (542)
T 3u1f_A 114 WTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANP 193 (542)
T ss_dssp HHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCT
T ss_pred HHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCCCCcceeeccccceecchhHHHHHHHHHhhcc
Confidence 9999999999987655544221 10 0001111000
Q ss_pred -----------------------------------Ccc--------cccchhH--HHHH---H----------------H
Q 008744 317 -----------------------------------GGF--------NYASTDL--AALW---Y----------------R 332 (555)
Q Consensus 317 -----------------------------------G~~--------tY~~~Di--A~~~---~----------------r 332 (555)
|.| .|..-|. .+.. + .
T Consensus 194 ~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~ 273 (542)
T 3u1f_A 194 GCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNE 273 (542)
T ss_dssp TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGG
T ss_pred cccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeeeeeccchhhhhhhhccccccCCcccccchhhh
Confidence 010 1111110 0000 0 0
Q ss_pred hhhcCCCeEEEEeeCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHH
Q 008744 333 LNEEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN 411 (555)
Q Consensus 333 ~~~~~~d~iI~V~g~dq~~hf~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~ 411 (555)
...+..| +++.|.|+..++...+ +.+.++|.+ +...+.|. |++. .+|+|||||+||+|++.|++++
T Consensus 274 ~~~~p~d--~~~~G~D~~~fh~~~~~a~l~~~g~~-----~~~~v~~h--g~l~-~~G~KMSKSlGNvi~p~~~i~~--- 340 (542)
T 3u1f_A 274 LERFPAD--VHVIGKDILKFHAIYWPAFLLSAGLP-----LPKKIVAH--GWWT-KDRKKISKSLGNVFDPVEKAEE--- 340 (542)
T ss_dssp TTCCSCS--EEEEEGGGHHHHHTHHHHHHHHHTCC-----CCSCEEEE--CCCE-ETTBCCBTTTTBCCCHHHHHHH---
T ss_pred hcCCcce--EEEecccccccccchhHHHHHhhccc-----ccceeccc--ccee-cCCceeccccCCCCChhHHHhh---
Confidence 0001122 6788988855322222 445677884 33455554 6666 5799999999999999999998
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccC-CCCCccccccccccc-cCChhHHHHHHHHHHHHHHHhhC
Q 008744 412 RSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKSG 489 (555)
Q Consensus 412 ~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~~~~~~~-~~n~~~ylqYa~aR~~silrk~~ 489 (555)
+|+|++|||+++.. ..+|++|+++.+... +++..+-+.+...|+.+...+..
T Consensus 341 --------------------------ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~ 394 (542)
T 3u1f_A 341 --------------------------FGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVN 394 (542)
T ss_dssp --------------------------HCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTT
T ss_pred --------------------------cCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhccc
Confidence 79999999999864 689999999988664 44444545566678776543332
Q ss_pred CChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhccccc
Q 008744 490 KDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSN 551 (555)
Q Consensus 490 ~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~ 551 (555)
... + .... ..+.++.++..+..+.+.+.+++++++++.+++.+++++...|.|++.
T Consensus 395 ~~~---~--~~~~-~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~Y~~~ 450 (542)
T 3u1f_A 395 GEW---P--SPAA-YTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTD 450 (542)
T ss_dssp SBC---C--CCCC-CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---C--ccch-hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 211 1 1112 256788899999999999999999999999999999999999999864
No 17
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.94 E-value=3.6e-25 Score=254.46 Aligned_cols=165 Identities=11% Similarity=0.104 Sum_probs=119.3
Q ss_pred CCCeEEEEeeCCccc-cHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHH
Q 008744 337 KAEWIIYVTDVGQQL-HFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSK 414 (555)
Q Consensus 337 ~~d~iI~V~g~dq~~-hf~~~-~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~ 414 (555)
++| +|+.|.||.. |.-.. +......|.. +++..+.|. |+|+. +|+|||||+||+|++.|++++
T Consensus 603 p~D--i~~~G~D~~~~H~~~~~~~~~~~~~~~----~~pk~v~~~--G~v~~-~G~KMSKS~GNvv~p~dli~~------ 667 (810)
T 1wkb_A 603 PLD--WRCSGKDLIPNHLTFFIFNHVAIFREE----HWPKGIAVN--GFGTL-EGQKMSKSKGNVLNFIDAIEE------ 667 (810)
T ss_dssp SCS--EEEEEGGGTTTHHHHHHHHHHHHSCGG----GSCCEEEEE--CCEEE-TTBCCCTTTTCCCBHHHHHHH------
T ss_pred Cce--EEeecccccccHHHHHHHHHHHHcCcc----ccccEEEEE--eEEEe-CCeehhhcCCCcCCHHHHHHH------
Confidence 455 6788888854 32211 1111223321 233456665 77875 799999999999999999998
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhh-ccCCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCChh
Q 008744 415 AVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL-KNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIE 493 (555)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L-~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~ 493 (555)
+|+|++|||+| +..+.+|++|+++.+... ...+.|+.+++++......
T Consensus 668 -----------------------yGaDalR~~ll~~~~~~~d~~fs~~~~~~~--------~~~l~rl~n~~~~~~~~~~ 716 (810)
T 1wkb_A 668 -----------------------NGADVVRLYIMSLAEHDSDFDWRRKEVGKL--------RKQIERFYELISQFAEYEV 716 (810)
T ss_dssp -----------------------HCHHHHHHHHHHHCCTTCCEEECHHHHHHH--------HHHHHHHHHHHHHHHTCCC
T ss_pred -----------------------cChHHHHHHHHhcCCCCCCcccCHHHHHHH--------HHHHHHHHHHHHHHHhccC
Confidence 79999999998 467799999999876331 2345788888887632210
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccccc
Q 008744 494 ELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYL-YNLSEYFTRFYSNC 552 (555)
Q Consensus 494 ~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl-~~La~~fn~fY~~~ 552 (555)
+ . .....+.++.|+..+..+.+.+.+++++++++.++..+ +.++..+|.|++.+
T Consensus 717 --~--~-~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~ 771 (810)
T 1wkb_A 717 --K--G-NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRT 771 (810)
T ss_dssp --C--S-CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred --c--c-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0 11125678899999999999999999999999999865 69999999887754
No 18
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.93 E-value=3e-26 Score=246.78 Aligned_cols=288 Identities=16% Similarity=0.106 Sum_probs=174.8
Q ss_pred CceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEE------EEeccCCchhHHHHHHHHHHhh---CCCCC-
Q 008744 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVL------RRNHVGDWGTQFGMLIEYLFEK---FPNSE- 196 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~------~~~yi~D~G~Q~~~l~~~~~~~---~~~~~- 196 (555)
-..|++++++|||||||||||+|++++++.+||. ..|.-|. +..++++++.||-.-...+.-. .|+.+
T Consensus 10 ~~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg 87 (481)
T 2o5r_A 10 HHHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGG 87 (481)
T ss_dssp ---CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred cceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence 3468999999999999999999999999999999 4454444 4567777777765443333211 12111
Q ss_pred ----CCCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCC--eee-e
Q 008744 197 ----DANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRV--DLE-E 269 (555)
Q Consensus 197 ----~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi--~f~-~ 269 (555)
++..+.+.. |.+ .+++... +|..... .....-++.+++....+|+ .++ +
T Consensus 88 ~~g~y~QS~r~~~----y~~-------------~a~~L~~---~G~aY~c----~ct~eel~~~r~~~~~~g~~~~yd~~ 143 (481)
T 2o5r_A 88 DHGPYRQSERVEI----YRE-------------HAERLVK---EGKAYYV----YAYPEEIEEMREKLLSEGKAPHYSQE 143 (481)
T ss_dssp TTCCCBGGGGHHH----HHH-------------HHHHHHH---TTSEEEE----CCCSTTTHHHHHHHHHTTCCCCBCGG
T ss_pred CCCceeeeccHHH----HHH-------------HHHHHHH---CCCeeEe----cCCHHHHHHHHHHHHhcCCCCCCCCc
Confidence 111111211 111 1111110 1110000 0000011223344556676 343 2
Q ss_pred ecc-cccCCcHHHHHHHHHhCC-------------Ceee--ecceEEEEecCCCCCeEEEecCCccccc-chhHHHHHHH
Q 008744 270 KGE-SFYNPYIPGVIDELSKQG-------------LVEE--SQGARVIFIEGVNIPLIIVKSDGGFNYA-STDLAALWYR 332 (555)
Q Consensus 270 ~~e-s~~~~~~~~v~~~L~~~g-------------~~~~--~dGa~~~~~~g~~~d~vl~ksDG~~tY~-~~DiA~~~~r 332 (555)
.++ +.. .++..+.+ +.| +.+. ..|++|+..+ +..|+||+|+||+|||. +.++ ++
T Consensus 144 ~s~r~l~---~~e~~~~~-~~G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~-~~~D~Vl~RsDG~ptY~~a~vv----DD 214 (481)
T 2o5r_A 144 MFEKFDT---PERRREYE-EKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTG-AIGDFVIMRSNGLPTYNFACVV----DD 214 (481)
T ss_dssp GGTTTCC---HHHHHHHH-HTTCCCEEEECCCSSCEEEEETTTEEEEECTT-SSCBEEEECTTSCBCHHHHHHH----HH
T ss_pred hhhhcCC---HHHHHHHH-hcCCcceEEEEcCCCceEEEecccceeEeccc-cCCCeEEEccCCCcchhhHHHH----HH
Confidence 112 111 23333333 233 2222 2467776544 23589999999999994 4443 33
Q ss_pred hhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHH-
Q 008744 333 LNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN- 411 (555)
Q Consensus 333 ~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~- 411 (555)
. .++++++| +|.||..|++++..++++||++ .+.+.|+++ +++.+|+|||||+|++ ++++++++++.
T Consensus 215 ~-~~githvi--rG~D~~~~t~~q~~l~~aLG~~------~p~~~H~pl--il~~~G~KLSKR~g~~-~l~~~~~~G~~p 282 (481)
T 2o5r_A 215 M-LMEITHVI--RGDDHLSNTLRQLALYEAFEKA------PPVFAHVST--ILGPDGKKLSKRHGAT-SVEAFRDMGYLP 282 (481)
T ss_dssp H-HTTCSEEE--EEGGGHHHHHHHHHHHHHTTCC------CCEEEEECC--EECTTSSBCCGGGSCC-BHHHHHHHTCCH
T ss_pred H-hCCCCeEE--EChhHHHhHHHHHHHHHHcCCC------CCeEEEEee--EECCCCCcccCcCCcc-cHHHHHHCCCCH
Confidence 3 36789985 9999999999999999999995 257999855 7779999999999988 89999998653
Q ss_pred -HHHHHHHHhcCCCCCCHHHHHHHHHhhh-hhhHHHhhhccCCCCCccccccccccccC
Q 008744 412 -RSKAVLIERGKDKEWTEEELEQTAEAVG-YGAAKYFDLKNNRLTNYTFSFDQMLNDKG 468 (555)
Q Consensus 412 -~a~~~~~~~~~~~~~~~~~~~~~a~~vg-~~airy~~L~~~~~~~~~Fd~~~~~~~~~ 468 (555)
...+.+.. .+|++....++ +. .+++++|+++..+.++..|||+++.++|+
T Consensus 283 eal~~~l~~----lG~s~~~~~e~---~~~~e~i~~f~l~~~~~~~~~fd~~kl~~~n~ 334 (481)
T 2o5r_A 283 EALVNYLAL----LGWSHPEGKEL---LTLEELISSFSLDRLSPNPAIFDPQKLKWMNG 334 (481)
T ss_dssp HHHHHHHHT----SSBCCTTCCCC---CCHHHHHHHCCGGGBCSSCEECCHHHHHHHHH
T ss_pred HHHHHHHHH----hCCCCCccccc---CCHHHHHHhCChhhCCccCcccChHHhhhhCH
Confidence 33334432 23332000000 12 36899999999999999999999999875
No 19
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.93 E-value=8.7e-26 Score=248.12 Aligned_cols=270 Identities=16% Similarity=0.141 Sum_probs=183.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHH
Q 008744 102 SKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQF 181 (555)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~ 181 (555)
.+.++...+.++++.+..+... ..++|++.|+ |||||+|||||+|++++++.+||- +-|- ..--|.|..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~---~ilRieDtD--- 172 (592)
T 3al0_C 104 GSMFITGAFFDILEVGPKKIRR--CFELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGK---FILRIEDTD--- 172 (592)
T ss_dssp ----------------CCCCCC--CCCCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCE---EEECBCCCC---
T ss_pred ChHHHHHHHHHHHHcChhhccc--CCCeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCc---EEEEecCcC---
Confidence 3567888888888777653222 2367999999 999999999999999999999984 2222 222223311
Q ss_pred HHHHHHHHhhCCCCCCCCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008744 182 GMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYK 261 (555)
Q Consensus 182 ~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~ 261 (555)
+. +.+..+.+.+.++|+
T Consensus 173 ---------------------------------------~~------------------------r~~~~~~~~I~~dL~ 189 (592)
T 3al0_C 173 ---------------------------------------TE------------------------RSSREYEQQILESLR 189 (592)
T ss_dssp ---------------------------------------SS------------------------SCCHHHHHHHHHHHH
T ss_pred ---------------------------------------hh------------------------hccHHHHHHHHHHHH
Confidence 00 001223456778999
Q ss_pred HcCCeeee----------ecccccCCcHHHHHHHHHhCCCeee-----------------------ecc---eEEEEec-
Q 008744 262 RLRVDLEE----------KGESFYNPYIPGVIDELSKQGLVEE-----------------------SQG---ARVIFIE- 304 (555)
Q Consensus 262 ~Lgi~f~~----------~~es~~~~~~~~v~~~L~~~g~~~~-----------------------~dG---a~~~~~~- 304 (555)
.||+.+|. +..|.+.+...++++.|.++|++|. .+| +++++++
T Consensus 190 wlGl~~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~ 269 (592)
T 3al0_C 190 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLP 269 (592)
T ss_dssp HTTCCCSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCS
T ss_pred HcCCCCCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCC
Confidence 99999864 2234444567899999999999996 346 6777765
Q ss_pred -----------------CCCCCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCC
Q 008744 305 -----------------GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS 367 (555)
Q Consensus 305 -----------------g~~~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~ 367 (555)
++..|+||+|+||.|||.. |...+.. ..+++|+| +|.||..+-++...+.++||++
T Consensus 270 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dg~ptY~~---a~vvDD~-~~githvi--rG~D~~~~t~~q~~l~~alg~~- 342 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNF---AVVVDDH-LMRISHVF--RGEDHLSNTPKQLMIYEAFGWE- 342 (592)
T ss_dssp SCCEECCTTTCSEECCSSSSCCEEEECTTSCCCHHH---HHHHHHH-HTTCSBCC--EEGGGGGGHHHHHHHHTTTTCC-
T ss_pred CCceeeecccceeeeccccCCCeEEEcCCCCeehhh---HHHHHHH-hcCCCeEE--EchhhHhCHHHHHHHHHHhCCC-
Confidence 3457899999999999995 4445555 57899995 9999999999998999999995
Q ss_pred CCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhh-hhhHH
Q 008744 368 ADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVG-YGAAK 444 (555)
Q Consensus 368 ~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~~~~~~~a~~vg-~~air 444 (555)
.+.+.|+ .+|.+.+|+|||||+|+ +++.++++.++ +...+.+.. .+|++..- + .+. .+.++
T Consensus 343 -----~P~~~hl--pli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~----lG~s~~~~-e---~~s~~e~i~ 406 (592)
T 3al0_C 343 -----APVFMHI--PLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLAL----LGWRVEGD-E---IFTIEEKLQ 406 (592)
T ss_dssp -----CCBCCEE--CCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTT----TTBCCCSC-S---CCCTTTTGG
T ss_pred -----CCeEEEe--eeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHH----hCCCCccc-c---cCCHHHHHh
Confidence 2578898 56888999999999998 58999999765 334444442 23332100 0 122 23688
Q ss_pred HhhhccCCCCCccccccccccccC
Q 008744 445 YFDLKNNRLTNYTFSFDQMLNDKG 468 (555)
Q Consensus 445 y~~L~~~~~~~~~Fd~~~~~~~~~ 468 (555)
.|++...+.++..||++++..+|+
T Consensus 407 ~f~~~~i~~~~~~fd~~kl~~~N~ 430 (592)
T 3al0_C 407 SFDPKDISNKGVIFDYQKLEWVNG 430 (592)
T ss_dssp GCCTTSBCSSCCBCCHHHHHHHHH
T ss_pred hCChhhcCcccceeCHHHHhhhhH
Confidence 999999888999999999988764
No 20
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.92 E-value=2.9e-24 Score=246.98 Aligned_cols=172 Identities=16% Similarity=0.212 Sum_probs=120.6
Q ss_pred CCCeEEEEeeCCccc-cHHHHHHHHHH-cCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHH
Q 008744 337 KAEWIIYVTDVGQQL-HFDMVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSK 414 (555)
Q Consensus 337 ~~d~iI~V~g~dq~~-hf~~~~~~l~~-lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~ 414 (555)
++| +|+.|.||.. ||..+..+..+ .|.. ++..-+.| |+|++.+|+|||||+||+|++.|++++
T Consensus 544 P~d--l~~~G~D~~r~w~~~~~~~~~~~~~~~----pf~~v~~h---g~vl~~~G~KMSKS~GNvV~p~dli~~------ 608 (821)
T 1ile_A 544 PAD--FIAEGIDQTRGWFNSLHQLGVMLFGSI----AFKNVICH---GLILDEKGQKMSKSKGNVVDPWDIIRK------ 608 (821)
T ss_dssp SBS--BEEEEGGGGGTHHHHHHHHHHHHHSSC----SBSEEEEE---CCEECTTSSCCCTTTTCCCCHHHHHTT------
T ss_pred Ccc--cccchhhhhccHHHHHHHHHHHhcCCC----CcceEEEE---eeEECCCCCCCCccCCCCCCHHHHHHH------
Confidence 445 6788999874 66666554444 3653 23333444 889988999999999999999999997
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccC-CCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCChh
Q 008744 415 AVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIE 493 (555)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~ 493 (555)
+|+|++|||+++.. +.+|++|+++.+.....+...-+.++..|+.......+....
T Consensus 609 -----------------------yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~ 665 (821)
T 1ile_A 609 -----------------------FGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLK 665 (821)
T ss_dssp -----------------------TCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT
T ss_pred -----------------------hCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence 89999999999985 789999999987663222233344444444322111110000
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHH-HHHhccc
Q 008744 494 ELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLS-EYFTRFY 549 (555)
Q Consensus 494 ~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La-~~fn~fY 549 (555)
. ...... ..+.++.|+..+..+++.+.+++++++++.++..+++++ ..++++|
T Consensus 666 ~--~~~~~~-~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Y 719 (821)
T 1ile_A 666 N--PPPPEK-RPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWY 719 (821)
T ss_dssp S--CCCSTT-SCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTT
T ss_pred c--cccccc-CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 0 000111 256788899999999999999999999999999999999 6666666
No 21
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.92 E-value=9.5e-26 Score=247.04 Aligned_cols=243 Identities=12% Similarity=0.072 Sum_probs=157.5
Q ss_pred CCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCch--hHHH-HHHHHHHhhCCCCCCCCcccHHHHHHHHHH
Q 008744 136 SPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG--TQFG-MLIEYLFEKFPNSEDANETAIGELQEFYRR 212 (555)
Q Consensus 136 SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G--~Q~~-~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~ 212 (555)
+|||||++||||+|+++++|+++|+|++.||+|.++++++|+| +++. .+..+. +. +.+.+..
T Consensus 27 gPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~-~~------~~G~~~~-------- 91 (523)
T 1irx_A 27 GITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEW-KD------YLGMPIS-------- 91 (523)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGG-GG------GTTSBGG--------
T ss_pred CCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHH-HH------HcCCCcc--------
Confidence 5999999999999999999999999999999999999999999 4330 000000 00 0011110
Q ss_pred HhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecccc-cCC-cHHHHHHHHHhCC
Q 008744 213 SKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESF-YNP-YIPGVIDELSKQG 290 (555)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~~~es~-~~~-~~~~v~~~L~~~g 290 (555)
+-.||+ ..|+.+++.+.+.|.+++++|||.+|.+.+|. |.+ .+.++++.|.++|
T Consensus 92 ----------------------~~p~p~--~~~~~~~~~~~~~~~~~l~~Lgi~~D~~~~se~~~~g~~~~~i~~L~~~G 147 (523)
T 1irx_A 92 ----------------------EVPDPW--GCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKR 147 (523)
T ss_dssp ----------------------GSCCTT--SSSSSHHHHHHHHHHHHHHTTTCCCEEEEHHHHHHTTTTHHHHHHHHHTH
T ss_pred ----------------------cCCcch--hhHHHHHHHHHHHHHHHHHHcCCCceEEechhhccchHHHHHHHHHHHch
Confidence 011221 12456788899999999999999997557776 755 8999999999999
Q ss_pred ----------------CeeeecceEEEEec--CCC-------------CCeEEEecCCcccccc-----------hhHHH
Q 008744 291 ----------------LVEESQGARVIFIE--GVN-------------IPLIIVKSDGGFNYAS-----------TDLAA 328 (555)
Q Consensus 291 ----------------~~~~~dGa~~~~~~--g~~-------------~d~vl~ksDG~~tY~~-----------~DiA~ 328 (555)
..|..+ |+... +.. .+.-....+|.+++.. .|++.
T Consensus 148 ~~iy~~~~~~~g~~~~~~y~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~g~~~~~d~~~G~g~~~w~~d~~~ 224 (523)
T 1irx_A 148 DKIMEILNKYREIAKQPPLPEN---WWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPM 224 (523)
T ss_dssp HHHHHHHHHHHHHTTCCCCCTT---CCSEEEECTTTCCEECEEEECSSSCEEECCSSSCCCEECTTSSCEEECHHHHHHH
T ss_pred HHHHHHHHhhccccccccccCC---ceeccccchhhCCcccccccCCCCceeeeecCCCccccCCcCCCCCCCCCcchHh
Confidence 666532 44221 111 0111111233332211 13433
Q ss_pred HHHHhhhcCCCeEEEEeeCCccc------cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECC-CCccceeccCCccc
Q 008744 329 LWYRLNEEKAEWIIYVTDVGQQL------HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DGKRLRTRFSEVVR 401 (555)
Q Consensus 329 ~~~r~~~~~~d~iI~V~g~dq~~------hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~-~G~kmSkR~G~~v~ 401 (555)
.++. ++ ..|++.|.||.. |..++. .+++|+.+ +.+.|+ |+|++. +|+|||||+||+|+
T Consensus 225 ~~~~---l~--~~vd~~G~Dh~~~h~s~~~~~~i~--~~alG~~~------p~~~h~--~~i~~~g~g~KmSKs~Gn~i~ 289 (523)
T 1irx_A 225 RWSH---FG--VDFEPAGKDHLVAGSSYDTGKEII--KEVYGKEA------PLSLMY--EFVGIKGQKGKMSGSKGNVIL 289 (523)
T ss_dssp HHHH---SC--CCBCCEEHHHHSTTSHHHHHHHHH--HHHHCCCC------CBCCEE--CCEEESCC---------CCCC
T ss_pred hHHH---cC--CCCcCCCcCccCCCcchhhHHHHH--HHHhCCCC------CeEEEE--EEEEeCCCCCCCCCcCCCCCC
Confidence 3222 22 235688999977 444442 26899842 357786 778877 79999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCcccccc-ccc
Q 008744 402 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFD-QML 464 (555)
Q Consensus 402 l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~-~~~ 464 (555)
+.|++++ ++++|+|||+++..+.++..|+++ .+.
T Consensus 290 ~~~~~~~-----------------------------~~pdalR~~l~~~~~~~~~~fs~~~~l~ 324 (523)
T 1irx_A 290 LSDLYEV-----------------------------LEPGLVRFIYARHRPNKEIKIDLGLGIL 324 (523)
T ss_dssp HHHHHTT-----------------------------SCHHHHHHHHHSSCTTSCEEECCSTTHH
T ss_pred HHHHHHH-----------------------------cCHHHHHHHHHhcCCCCCceeCcchhHH
Confidence 9999987 799999999999889999999999 554
No 22
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.91 E-value=1.6e-23 Score=242.16 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=123.1
Q ss_pred EEEeeCCcc-ccHHHHHHH-HHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHH
Q 008744 342 IYVTDVGQQ-LHFDMVFSA-AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419 (555)
Q Consensus 342 I~V~g~dq~-~hf~~~~~~-l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~ 419 (555)
+|+.|.||. .||..+... ....|.. |+..-+.| |+|++.+|+|||||+||+|++.|++++
T Consensus 551 l~~~G~D~~r~wf~~~l~~s~~~~g~~----Pfk~v~~h---G~V~d~~G~KMSKSlGNvV~P~dvi~~----------- 612 (917)
T 1ffy_A 551 MYLEGSDQYRGWFNSSITTSVATRGVS----PYKFLLSH---GFVMDGEGKKMSKSLGNVIVPDQVVKQ----------- 612 (917)
T ss_dssp EEEEEGGGGTTHHHHHHHHHHHHHSSC----SBSEEEEE---CCEECTTSCCCCSSSSCCCCHHHHHHH-----------
T ss_pred EEEEEecccccHHHHHHHHHHHhhCCC----cccceeEe---eeEEcCCCcCcccccCCcCChHHHHHh-----------
Confidence 788999997 477776433 3345664 23333444 889988999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCC---hhh-h
Q 008744 420 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKD---IEE-L 495 (555)
Q Consensus 420 ~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~---~~~-~ 495 (555)
+|+|++|||+++..+.+|++|+++.+... ..++.|+.+.+|..... ... .
T Consensus 613 ------------------yGaDalR~~lls~~~~~D~~fs~~~l~~~--------~~~~~kl~n~~r~~l~nl~~~~~~~ 666 (917)
T 1ffy_A 613 ------------------KGADIARLWVSSTDYLADVRISDEILKQT--------SDDYRKIRNTLRFMLGNINDFNPDT 666 (917)
T ss_dssp ------------------TCHHHHHHHHHTSCTTSCEECCHHHHHHH--------HHHHHHHHHHHHHHHHTSTTCCHHH
T ss_pred ------------------CCHHHHHHHHhccCCCCCcccCHHHHHHH--------HHHHHHHHHHHHHHHhhhhccCccc
Confidence 89999999999977899999999987542 12456777766654211 100 0
Q ss_pred hhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHH-HHhcccc
Q 008744 496 KKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSE-YFTRFYS 550 (555)
Q Consensus 496 ~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~-~fn~fY~ 550 (555)
.......+ .+.++.|+..+..+++.+.+++++++++.++.++++++. .|++||-
T Consensus 667 ~~v~~~~l-~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl 721 (917)
T 1ffy_A 667 DSIPESEL-LEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYL 721 (917)
T ss_dssp HCCCGGGS-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHH
T ss_pred ccCCcccc-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 00011112 567889999999999999999999999999999999998 7888873
No 23
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.91 E-value=4.6e-23 Score=236.44 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=112.1
Q ss_pred EEeeCCcc-ccHHHHHHH-HHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHHHHHHHh
Q 008744 343 YVTDVGQQ-LHFDMVFSA-AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIER 420 (555)
Q Consensus 343 ~V~g~dq~-~hf~~~~~~-l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~ 420 (555)
++.|.||. .||.++... +...|.. |+..-+.| |+|++.+|+|||||+||+|++.|++++
T Consensus 485 ~v~G~Dii~~W~a~~~~~~~~~~g~~----Pfk~v~~h---G~vld~~G~KMSKSlGNvIdP~dli~~------------ 545 (862)
T 1gax_A 485 LVTGYDILFLWVSRMEVSGYHFMGER----PFKTVLLH---GLVLDEKGQKMSKSKGNVIDPLEMVER------------ 545 (862)
T ss_dssp EEEEGGGTTTTHHHHHHHHHHHSSSC----SBSEEEEE---CCEECTTSCBCCTTTTCCCCHHHHHHH------------
T ss_pred EecCccccccHHHHHHHHHHHhcCCC----cccEEEEe---eeEEcCCCCCccccCCCCCCHHHHHHH------------
Confidence 34455543 245554433 3455653 23334444 899989999999999999999999998
Q ss_pred cCCCCCCHHHHHHHHHhhhhhhHHHhhhcc-CCCCCccccccccccccCChhHHHHHHHHHHHHHHHhh---CCChhhhh
Q 008744 421 GKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKS---GKDIEELK 496 (555)
Q Consensus 421 ~~~~~~~~~~~~~~a~~vg~~airy~~L~~-~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~---~~~~~~~~ 496 (555)
+|+|++||++++. .+.+|++||++.+.... | + +.|+.+..|-. ..+..+.
T Consensus 546 -----------------yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~-~---f----~nkl~N~~rf~~~~~~~~~~~- 599 (862)
T 1gax_A 546 -----------------YGADALRFALIYLATGGQDIRLDLRWLEMAR-N---F----ANKLYNAARFVLLSREGFQAK- 599 (862)
T ss_dssp -----------------HCHHHHHHHHHHHCCTTCCEECCHHHHHHHH-H---H----HHHHHHHHHHHHHHSSSCCCC-
T ss_pred -----------------cChHHHHHHHHhcCCCCCCCccCHHHHHHHH-H---H----HHHHHHHHHHHHhcccCCCCc-
Confidence 7999999999996 67999999999875531 1 2 23443333221 1111000
Q ss_pred hcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHH-HHHhccc
Q 008744 497 KTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLS-EYFTRFY 549 (555)
Q Consensus 497 ~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La-~~fn~fY 549 (555)
... ..+.++.++..+..+...+.+++++++++.++..+++++ ..+.+||
T Consensus 600 ---~~~-~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Y 649 (862)
T 1gax_A 600 ---EDT-PTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWY 649 (862)
T ss_dssp ---BCC-CCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTH
T ss_pred ---ccc-CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHH
Confidence 011 256788999999999999999999999999999999998 4677776
No 24
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.90 E-value=1.3e-22 Score=233.55 Aligned_cols=123 Identities=13% Similarity=0.051 Sum_probs=97.9
Q ss_pred ccceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhc-cCCCCCccccccccccccC
Q 008744 390 KRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDKG 468 (555)
Q Consensus 390 ~kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~-~~~~~~~~Fd~~~~~~~~~ 468 (555)
+|||||+||+|++.|++++ +|+|++|||+++ ..+.+|++||++.+...
T Consensus 636 ~KMSKSkGNvVdP~diI~~-----------------------------yGADalRl~ll~~~~~~~D~~fs~~~v~~~-- 684 (878)
T 2v0c_A 636 AVMSKSKGNGVMVGPFVKE-----------------------------QGADIARITILFAAPPENEMVWTEEGVQGA-- 684 (878)
T ss_dssp EECSGGGTCCCBHHHHHHH-----------------------------SCHHHHHHHHHHHSCTTSCEEECHHHHHHH--
T ss_pred HHhhccCCCcccHHHHHHH-----------------------------cCccHHHHHHhccCCCCCCceeCHHHHHHH--
Confidence 8999999999999999998 899999999998 57799999999987542
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCChh-hhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Q 008744 469 NTAVYLLYAHARICSIIRKSGKDIE-ELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTR 547 (555)
Q Consensus 469 n~~~ylqYa~aR~~silrk~~~~~~-~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl~~La~~fn~ 547 (555)
...++|+.+++++...... .........+ .+.+++|+..+..+...+.+++++++++.++..+++++..+|+
T Consensus 685 ------~~~l~Rl~n~~~~~~~~~~~~~~~~~~~~l-~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k 757 (878)
T 2v0c_A 685 ------WRFLNRIYRRVAEDREALLETSGVFQAEAL-EGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYE 757 (878)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTCCCCCCGGGC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHhcccccccccCcccC-CHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhh
Confidence 2456788888776421110 0000001112 5678999999999999999999999999999999999999999
Q ss_pred ccc
Q 008744 548 FYS 550 (555)
Q Consensus 548 fY~ 550 (555)
|-+
T Consensus 758 ~~~ 760 (878)
T 2v0c_A 758 YRK 760 (878)
T ss_dssp HHH
T ss_pred hcc
Confidence 843
No 25
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.89 E-value=1.7e-21 Score=222.93 Aligned_cols=166 Identities=13% Similarity=0.220 Sum_probs=119.1
Q ss_pred EEEeeCCc-ccc--HHHHH-HHHHHcCCCCCCCCCCCcEEEEEeeEEE-------CCCCc--------------------
Q 008744 342 IYVTDVGQ-QLH--FDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVL-------GEDGK-------------------- 390 (555)
Q Consensus 342 I~V~g~dq-~~h--f~~~~-~~l~~lG~~~~~~~~~~~~~Hv~~g~v~-------~~~G~-------------------- 390 (555)
+||.|.|| ..| +.+.+ .++..+|+.+...|+ .++. ..|||+ +.+|+
T Consensus 546 ~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePF-k~ll--~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~ 622 (880)
T 4arc_A 546 IYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPA-KQLL--CQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIV 622 (880)
T ss_dssp EEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSE-EEEE--CCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEE
T ss_pred EeecchhhHHHHHHHHHHHHHHHHHhhcccCCCCh-HHeE--EeceEeecceeccccCCcccccCHHHhccccccccccc
Confidence 77888888 345 45555 556778875421122 1232 348885 66777
Q ss_pred ----------------cceeccCCccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhcc-CCC
Q 008744 391 ----------------RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRL 453 (555)
Q Consensus 391 ----------------kmSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~-~~~ 453 (555)
|||||+||+|++.|++++ +|+|++|||+|+. .+.
T Consensus 623 ~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIek-----------------------------YGADalRl~ll~~~~~~ 673 (880)
T 4arc_A 623 KAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVER-----------------------------YGADTVRLFMMFASPAD 673 (880)
T ss_dssp EEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHH-----------------------------HCHHHHHHHHHHSSCTT
T ss_pred cccccCCccccccccccccCcCCCCCCHHHHHHH-----------------------------cCchHHHHHHHhcCCCC
Confidence 999999999999999998 8999999999998 679
Q ss_pred CCccccccccccccCChhHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHH-hcchH
Q 008744 454 TNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPN 532 (555)
Q Consensus 454 ~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~-~~~p~ 532 (555)
++++|+.+.+.... .+ ..|+.++++....... ........+ .+.+++|+..+.+....+.++++ .++++
T Consensus 674 ~dl~~s~~~ie~a~----rf----l~rlwn~~~~~~~~~~-~~~~~~~~l-~~~D~~ll~~l~~~i~~V~~a~ed~~~fn 743 (880)
T 4arc_A 674 MTLEWQESGVEGAN----RF----LKRVWKLVYEHTAKGD-VAALNVDAL-TENQKALRRDVHKTIAKVTDDIGRRQTFN 743 (880)
T ss_dssp SCEECCHHHHHHHH----HH----HHHHHHHHHHHHHTCC-CCCCCSTTC-CHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred CCcccCHHHHHHHH----HH----HHHHHHHHHHHHhccc-ccccccccC-CHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 99999998764321 13 3455555554311100 000011122 56788999999999999999999 79999
Q ss_pred HHHHHHHHHHHHHhccc
Q 008744 533 VVCEYLYNLSEYFTRFY 549 (555)
Q Consensus 533 ~l~~yl~~La~~fn~fY 549 (555)
.++..+++++..+|+|.
T Consensus 744 tAi~~l~efvn~l~k~~ 760 (880)
T 4arc_A 744 TAIAAIMELMNKLAKAP 760 (880)
T ss_dssp HHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999999864
No 26
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.88 E-value=4.1e-22 Score=214.35 Aligned_cols=244 Identities=18% Similarity=0.158 Sum_probs=178.6
Q ss_pred eEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHH
Q 008744 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (555)
Q Consensus 129 ~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (555)
+|.+= -.|.|||+|||||+|++++-...||- +.....-=|.|....
T Consensus 25 ~v~~R-FAPsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~---------------------------- 70 (488)
T 3afh_A 25 LVRVR-FAPSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTDTE---------------------------- 70 (488)
T ss_dssp CCEEE-ECCCCSSSCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCTT----------------------------
T ss_pred CceEE-ECCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEEeeCCcc----------------------------
Confidence 46664 45999999999999999977777664 333444445553210
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee----------ecccccCCc
Q 008744 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE----------KGESFYNPY 278 (555)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~----------~~es~~~~~ 278 (555)
.. +..+.+.+.++|+.||+.+|. +..|.+.+.
T Consensus 71 ---------R~-----------------------------~~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp~~QSer~~~ 112 (488)
T 3afh_A 71 ---------RS-----------------------------SREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEI 112 (488)
T ss_dssp ---------TC-----------------------------CHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHH
T ss_pred ---------cc-----------------------------cHHHHHHHHHHHHHcCCCCCcCCCCCCCCCCeeeeCCHHH
Confidence 00 122335677899999999864 234444456
Q ss_pred HHHHHHHHHhCCCeee-----------------------ecc---eEEEEec------------------CCCCCeEEEe
Q 008744 279 IPGVIDELSKQGLVEE-----------------------SQG---ARVIFIE------------------GVNIPLIIVK 314 (555)
Q Consensus 279 ~~~v~~~L~~~g~~~~-----------------------~dG---a~~~~~~------------------g~~~d~vl~k 314 (555)
..++++.|.++|++|. .+| +++++++ ++..|.||+|
T Consensus 113 y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R 192 (488)
T 3afh_A 113 YREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMK 192 (488)
T ss_dssp HHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEEEEGGGSCCEEEEC
T ss_pred HHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEeecCCCCCCeEEEe
Confidence 7899999999999996 235 5777664 2347899999
Q ss_pred cCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCcccee
Q 008744 315 SDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRT 394 (555)
Q Consensus 315 sDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSk 394 (555)
+||.|||.. |...+.. ..+.+|+| +|.||..+-++...+.++||++ .+.+.|+ .+|.+.+|+||||
T Consensus 193 ~DG~PtY~l---A~vVDD~-~mgIThVi--RG~D~l~~tp~q~~l~~aLG~~------~P~f~H~--pli~~~~g~KLSK 258 (488)
T 3afh_A 193 SNGFPTYNF---AVVVDDH-LMRISHVF--RGEDHLSNTPKQLMIYEAFGWE------APVFMHI--PLILGSDRTPLSK 258 (488)
T ss_dssp TTSCBCHHH---HHHHHHH-HTTCSEEE--EEGGGGGGHHHHHHHHHHHTCC------CCEEEEE--CCEECTTSSBCCT
T ss_pred cCCCeehhh---HHHHHHH-hcCCCEEE--EchhhhhCHHHHHHHHHHcCCC------CCeEEEE--eeeeCCCCCcccC
Confidence 999999994 5555665 57999995 9999999999988999999995 3689998 5688999999999
Q ss_pred ccCCccchHHHHHHHH--HHHHHHHHHhcCCCCCCHH--HHHHHHHhhhhhhHHHhhhccCCCCCccccccccccccC
Q 008744 395 RFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEE--ELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 468 (555)
Q Consensus 395 R~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~~--~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~ 468 (555)
|+|+ +++.++.+.++ +...+.+..-| |++. ++..+ .+.++.|+++..+.++..||++++..+|+
T Consensus 259 R~g~-~~l~~~r~~G~~peal~n~l~~lG----~s~~~~e~~s~-----~e~i~~f~~~~i~~~~~~fd~~kl~~~N~ 326 (488)
T 3afh_A 259 RHGA-TSVEHFRREGILSRALMNYLALLG----WRVEGDEIFTI-----EEKLQSFDPKDISNKGVIFDYQKLEWVNG 326 (488)
T ss_dssp TTSC-CBHHHHHHHTCCHHHHHHHHHHTT----CCCSSCSCCCH-----HHHGGGCCGGGSCSSCEECCHHHHHHHHH
T ss_pred cCCc-ccHHHHHHCCCCHHHHHHHHHHhC----CCCcccccCCH-----HHHHhhCChhhcCccccccChHHhhhccH
Confidence 9998 58999999875 34455555433 3221 11111 13588999999999999999999988874
No 27
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.86 E-value=8.7e-22 Score=199.66 Aligned_cols=232 Identities=18% Similarity=0.089 Sum_probs=148.4
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHH
Q 008744 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 213 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 213 (555)
=-.|+|||+|||||+|++++....|| ++.+...--|.|....
T Consensus 9 RFAPsPtG~LHiG~~rtal~n~l~Ar-----~~~g~~ilRieDtD~~--------------------------------- 50 (298)
T 1nzj_A 9 RFAPSPSGELHFGSLIAALGSYLQAR-----ARQGRWLVRIEDIDPP--------------------------------- 50 (298)
T ss_dssp EECCCTTSCCCHHHHHHHHHHHHHHH-----HTTCEEEEEECCSCGG---------------------------------
T ss_pred EECcCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEecCCch---------------------------------
Confidence 55899999999999999995555554 4556666556663210
Q ss_pred hcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--eecccccCCcHHHHHHHHHhCCC
Q 008744 214 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE--EKGESFYNPYIPGVIDELSKQGL 291 (555)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~--~~~es~~~~~~~~v~~~L~~~g~ 291 (555)
+ . +..+.+.+.++|+.||+.+| ....|.+.+...++++.|.++|+
T Consensus 51 --R--~-----------------------------~~~~~~~I~~dL~~LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~ 97 (298)
T 1nzj_A 51 --R--E-----------------------------VPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGL 97 (298)
T ss_dssp --G--S-----------------------------CTTHHHHHHHHHHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTC
T ss_pred --h--h-----------------------------HHHHHHHHHHHHHHcCCCCCCCCeeeeCCHHHHHHHHHHHHHcCC
Confidence 0 0 01123567789999999996 23456666778899999999999
Q ss_pred eeee--------------------------cceEEEEec-------------------CCCCCeEEEecCCcccccchhH
Q 008744 292 VEES--------------------------QGARVIFIE-------------------GVNIPLIIVKSDGGFNYASTDL 326 (555)
Q Consensus 292 ~~~~--------------------------dGa~~~~~~-------------------g~~~d~vl~ksDG~~tY~~~Di 326 (555)
+|.. ..+++++++ ++..|+||.|+||.|||. +
T Consensus 98 aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R~dG~PtY~---l 174 (298)
T 1nzj_A 98 SYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYN---L 174 (298)
T ss_dssp EEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEECTTSCBCHH---H
T ss_pred cccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEECCCCCEeee---e
Confidence 9963 136777554 133689999999999996 7
Q ss_pred HHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHH
Q 008744 327 AALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 406 (555)
Q Consensus 327 A~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll 406 (555)
|++.++. ..+++++| .|.||..+-++...+.+++|++ .+.+.|+ ++|.+.+|+|||||.|++ +++++.
T Consensus 175 a~vvdD~-~~giThvI--rG~D~l~~t~~q~~l~~alG~~------~p~~~H~--pll~~~~g~KLSKR~g~~-~v~~~~ 242 (298)
T 1nzj_A 175 AVVVDDH-FQGVTEIV--RGADLIEPTVRQISLYQLFGWK------VPDYIHL--PLALNPQGAKLSKQNHAP-ALPKGD 242 (298)
T ss_dssp HHHHHHH-HTTCCEEE--EEGGGHHHHHHHHHHHHHHTCC------CCEEEEE--CBCCC--------------CCCSSC
T ss_pred eeeeEHH-hcCCCEEE--eCccccccHHHHHHHHHHcCCC------CCeEEEe--eeeECCCCCcccccCCcc-ChhcCC
Confidence 8888877 57999997 4999998888887888999995 3678998 568789999999999987 677765
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCCCCC
Q 008744 407 DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTN 455 (555)
Q Consensus 407 ~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~ 455 (555)
+++. ..+.+..+|-.+.-. .++..+.+ +=.+++..|+++..+.++
T Consensus 243 ~~~~--~~~~l~~lG~~~~~~-~~~~~~~~-~l~~~~~~f~~~~~~~~~ 287 (298)
T 1nzj_A 243 PRPV--LIAALQFLGQQAEAH-WQDFSVEQ-ILQSAVKNWRLTAVPESA 287 (298)
T ss_dssp CHHH--HHHHHHHTTCCCCSC-GGGSCHHH-HHHHHHHTCCGGGSCCCS
T ss_pred ccHH--HHHHHHHcCCCCCcc-cccCCHHH-HHHHHHHhCCHhhCCCCC
Confidence 4432 334444444322110 11111111 111467778888776665
No 28
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=99.84 E-value=8.3e-21 Score=164.24 Aligned_cols=103 Identities=26% Similarity=0.516 Sum_probs=88.1
Q ss_pred chHhHHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhhCCCCCC
Q 008744 7 NTGNVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEM 85 (555)
Q Consensus 7 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~ 85 (555)
.| ++++.+.+.|.+++..... ..+..+.+++| +++||||+||+||.|||.+| ++|++||++|++.|+.+++
T Consensus 3 ~M-~i~~~l~~~i~~al~~~~~-~~~~~~~ve~p~~~~~GD~a~n~a~~lak~~~------~~P~~iA~~i~~~l~~~~~ 74 (109)
T 3gdz_A 3 AM-NIQALLSEKVSQALIAAGA-PADCEPQVRQSAKVQFGDYQANGVMAVAKKLG------MAPRQLAEQVLSHLDLNGI 74 (109)
T ss_dssp CC-CHHHHHHHHHHHHHHHTTC-CTTCCCCEEECSSGGGCSEEECCHHHHHHHTT------SCHHHHHHHHHHHCCCTTT
T ss_pred cc-CHHHHHHHHHHHHHHHcCC-CccCCceeecCCCCCcceeecHHHHHHHHHhC------CCHHHHHHHHHHhcCcCCc
Confidence 45 7999999999999987632 11233455554 67899999999999999999 9999999999999987788
Q ss_pred ceeeEEecCCeEEEEeCHHHHHHHHHHHHHcC
Q 008744 86 IESCSVAGPGFVNVVLSKNWMAKNIQKMLVDG 117 (555)
Q Consensus 86 i~~v~v~gpGfiN~~l~~~~~~~~~~~~~~~~ 117 (555)
|++++++|||||||+|++.+|.+.+.+++.+.
T Consensus 75 i~~vevagpGFINf~l~~~~~~~~l~~il~~~ 106 (109)
T 3gdz_A 75 ANKVEIAGPGFINIFLDPAFLADNVNRALQSE 106 (109)
T ss_dssp EEEEEEETTTEEEEEECHHHHHHHHHHHHTTC
T ss_pred EeEEEEeCCCeEEEEECHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999988654
No 29
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.82 E-value=1.8e-19 Score=192.89 Aligned_cols=246 Identities=17% Similarity=0.223 Sum_probs=175.2
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHH
Q 008744 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (555)
++|.+=|. |+|||+|||||+|++++....||- +....+--|.|...+
T Consensus 24 ~~v~~RFA-PSPTG~lHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~--------------------------- 70 (490)
T 4g6z_A 24 RPVRTRFA-PSPTGFIHLGNIRSALYPWAFARK-----MKGTFVLRIEDTDVE--------------------------- 70 (490)
T ss_dssp CCCEEEEC-CCCCSCCBHHHHHHHHHHHHHHHH-----TTCEEEEEECCCCGG---------------------------
T ss_pred CCceEEeC-CCCCCCccHHHHHHHHHHHHHHHh-----cCCeEEEEeCCCCcc---------------------------
Confidence 44667555 999999999999999987777763 333444444452210
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--ecccccCCcHHHHHHH
Q 008744 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDE 285 (555)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~~--~~es~~~~~~~~v~~~ 285 (555)
+ . +..+.+.+.++++.||+..|. +..|.+.+...++++.
T Consensus 71 --------R--~-----------------------------~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~~~y~~~~~~ 111 (490)
T 4g6z_A 71 --------R--S-----------------------------SQEAVDAILEGMAWLGLDYDEGPYYQMQRMDRYREVLAQ 111 (490)
T ss_dssp --------G--C-----------------------------CHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHH
T ss_pred --------c--c-----------------------------cHHHHHHHHHHHHHcCCCCCCCCcccccCHHHHHHHHHH
Confidence 0 0 112335667799999999852 3456555667889999
Q ss_pred HHhCCCeeee----------------cc------------------------eEEEEec--------------C------
Q 008744 286 LSKQGLVEES----------------QG------------------------ARVIFIE--------------G------ 305 (555)
Q Consensus 286 L~~~g~~~~~----------------dG------------------------a~~~~~~--------------g------ 305 (555)
|.++|++|.. .| ..++++. |
T Consensus 112 Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~~~~~D~i~G~~~~~~ 191 (490)
T 4g6z_A 112 MQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVAWDDAVKGRVEISN 191 (490)
T ss_dssp HHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSEEEEEETTTEEEEEEG
T ss_pred HHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCcEEEEEeeeeeeeecc
Confidence 9999988830 00 0012211 1
Q ss_pred -CCCCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEE
Q 008744 306 -VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV 384 (555)
Q Consensus 306 -~~~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v 384 (555)
.-.|.||.|+||.|||. +|..++.. ..+.+|+| .|.||...-++...+.++|||+ .+.+.|++ +|
T Consensus 192 ~~~~D~Vl~R~DG~ptY~---lA~vVDD~-~mgIThVi--RG~D~l~~tprq~~l~~aLG~~------~P~f~Hlp--Li 257 (490)
T 4g6z_A 192 EELDDLVVARPDGTPMYN---FCVVVDDL-DMGITHVI--RGDDHVNNTPRQINILRALGGE------VPVYAHLP--TV 257 (490)
T ss_dssp GGCCCCEEECTTSCBCHH---HHHHHHHH-HTTCCEEE--EEGGGGGGHHHHHHHHHHTTCC------CCEEEEEC--CE
T ss_pred ccCCCeEEEeeCCCccch---hHHHHHHH-hcCCCEEE--eccccccChHHHHHHHHHcCCC------CCeEEEec--ce
Confidence 22689999999999998 57777777 57999995 8999999888888999999995 36899984 58
Q ss_pred ECCCCccceeccCCccchHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhh-hhhHHHhhhccCCCCCcccccc
Q 008744 385 LGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVG-YGAAKYFDLKNNRLTNYTFSFD 461 (555)
Q Consensus 385 ~~~~G~kmSkR~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~~~~~~~a~~vg-~~airy~~L~~~~~~~~~Fd~~ 461 (555)
++++|+|||||.|. +++.++.++++ +...+.+..- +|++.+. +.+. .+.+..|+++....++..||++
T Consensus 258 ~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~l----G~s~~~~----e~~s~~eli~~F~~~~~~~~~~~fd~~ 328 (490)
T 4g6z_A 258 LNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARL----GWSHGDA----EIFTREQFVEWFDLEHLGKSPAQYDHN 328 (490)
T ss_dssp ECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTS----SBCCTTC----CCCCHHHHHHHCCGGGBCSSCEECCHH
T ss_pred eCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHh----CCCCCCc----cccCHHHHHhhCCHhhCCCCCCccCHH
Confidence 89999999999995 69999998876 3455555533 3432110 1122 2567899999999999999999
Q ss_pred ccccccC
Q 008744 462 QMLNDKG 468 (555)
Q Consensus 462 ~~~~~~~ 468 (555)
++.++|+
T Consensus 329 KL~~~N~ 335 (490)
T 4g6z_A 329 KLNWLNN 335 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988875
No 30
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.80 E-value=5.9e-18 Score=197.25 Aligned_cols=166 Identities=10% Similarity=0.116 Sum_probs=115.6
Q ss_pred CCCeEEEEeeCCccc-cHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHHHHHHHHHHH
Q 008744 337 KAEWIIYVTDVGQQL-HFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSK 414 (555)
Q Consensus 337 ~~d~iI~V~g~dq~~-hf~~~-~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dll~e~~~~a~ 414 (555)
++| +|+.|.||.. |.--. +......|.. +++..+.|. |+|+. +|+|||||+||+|++.|++++
T Consensus 603 P~D--i~~~G~D~i~~H~~~~~~~~~a~~~~~----~~pk~v~~~--G~v~~-~G~KMSKS~GNvv~p~d~i~~------ 667 (967)
T 1wz2_A 603 PLD--WRCSGKDLIPNHLTFFIFNHVAIFREE----HWPKGIAVN--GFGTL-EGQKMSKSKGNVLNFIDAIEE------ 667 (967)
T ss_dssp SCS--EEEEEGGGTTTHHHHHHHHHHHHSCST----TSCCCEEEE--CCEEE-SSSCCCTTTCCCCBHHHHHHT------
T ss_pred CCe--EEeeeeCcchhHHHHHHHHHHHHcCcc----cccceEEEe--eEEee-CCEEccccccCCCCHHHHHHH------
Confidence 455 6778888853 32211 1111223321 233556665 77875 799999999999999999997
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhc-cCCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhCCChh
Q 008744 415 AVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIE 493 (555)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~-~~~~~~~~Fd~~~~~~~~~n~~~ylqYa~aR~~silrk~~~~~~ 493 (555)
+|+|++|||+++ ..+.+|++|+++.+... ...+.|+.+++++......
T Consensus 668 -----------------------yGaDalR~~ll~~~~~~~d~~fs~~~~~~~--------~~~l~rl~n~~~~~~~~~~ 716 (967)
T 1wz2_A 668 -----------------------NGADVVRLYIMSLAEHDSDFDWRRKEVGKL--------RKQIERFYELISQFAEYEV 716 (967)
T ss_dssp -----------------------TCHHHHHHHHHHHCCTTCCEEECHHHHHHH--------HHHHHHHHHHHHHHHSSCC
T ss_pred -----------------------hChHHHHHHHHhCCCCCCCcccCHHHHHHH--------HHHHHHHHHHHHHHhcCCC
Confidence 899999999984 56799999999876332 2233566666665422100
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHH-HHHHHHHhccccccc
Q 008744 494 ELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYL-YNLSEYFTRFYSNCQ 553 (555)
Q Consensus 494 ~~~~~~~~~l~~~~e~~L~~~l~~~p~~v~~a~~~~~p~~l~~yl-~~La~~fn~fY~~~~ 553 (555)
+ ... ...+.++.++..+..+...+.+++++++++.++..+ +.+...+|.|.+.++
T Consensus 717 --~--~~~-~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k 772 (967)
T 1wz2_A 717 --K--GNV-ELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTE 772 (967)
T ss_dssp --C--CCC-CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred --C--Ccc-cCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 011 124667889999999999999999999999999865 588889987766543
No 31
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.78 E-value=8.5e-19 Score=188.96 Aligned_cols=238 Identities=18% Similarity=0.138 Sum_probs=167.5
Q ss_pred cCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHHh
Q 008744 135 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSK 214 (555)
Q Consensus 135 ~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~ 214 (555)
-.|.|||+|||||+|++++ |.|.+.++.+..+--|.|... + .
T Consensus 6 FAPSPtG~lHiG~artal~-----n~l~Ar~~~G~filRieDtD~--------------~-----R-------------- 47 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVF-----NWLYARHRGGKFILRIEDTDR--------------E-----R-------------- 47 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHH-----HHHHHHHTTCEEEEEECCCSS--------------S-----S--------------
T ss_pred eCCCCCCCccHHHHHHHHH-----HHHHHHhcCCeEEEEEeeCCc--------------c-----c--------------
Confidence 4699999999999999998 555555677777777777532 0 0
Q ss_pred cccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--eecccccCCcHHHHHHHHHhCCCe
Q 008744 215 NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE--EKGESFYNPYIPGVIDELSKQGLV 292 (555)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~--~~~es~~~~~~~~v~~~L~~~g~~ 292 (555)
.. ..+.+.+.++++.||+..| .+..|.+.+...++++.|.++|++
T Consensus 48 ----~~-----------------------------~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~y~~~~~~Li~~G~A 94 (492)
T 2cfo_A 48 ----SR-----------------------------PEYTENILEGLQWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLA 94 (492)
T ss_dssp ----CC-----------------------------HHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSE
T ss_pred ----cc-----------------------------hHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHHHHHHHCCCc
Confidence 00 1122455667788888764 233454545566777777777777
Q ss_pred eee-----------------------c-----------------ce-EEEE--ec-------------------CCC-CC
Q 008744 293 EES-----------------------Q-----------------GA-RVIF--IE-------------------GVN-IP 309 (555)
Q Consensus 293 ~~~-----------------------d-----------------Ga-~~~~--~~-------------------g~~-~d 309 (555)
|.. + |. .+++ ++ ... .|
T Consensus 95 Y~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D 174 (492)
T 2cfo_A 95 YYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGD 174 (492)
T ss_dssp EEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSS
T ss_pred eEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecceeeeeecccccCCC
Confidence 720 1 21 1222 21 123 68
Q ss_pred eEEEecC-----CcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEE
Q 008744 310 LIIVKSD-----GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV 384 (555)
Q Consensus 310 ~vl~ksD-----G~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v 384 (555)
+||.|+| |.|||. +|..++.. ..+.+++| .|.||..+-++...+.+++|++ .+.+.|+ ++|
T Consensus 175 ~Vl~R~d~~p~~G~PtY~---la~vvDD~-~~gIthvi--RG~D~~~~t~~q~~l~~alg~~------~P~~~H~--pli 240 (492)
T 2cfo_A 175 MVIARAAPRGEIGYPLYN---LVVVVDDI-AMGITDVI--RGEDHIGNTPKQILLYEALGAT------PPNFAHT--PLI 240 (492)
T ss_dssp EEEECSCCTTSCCCBCHH---HHHHHHHH-HTTCSEEE--EEGGGTTHHHHHHHHHHHTTCC------CCEEEEE--CCE
T ss_pred eEEEEecCCCCCCceeeh---hhhhhhhh-cCCCCeEE--EchhhhhCHHHHHHHHHHcCCC------CceEEEe--eeE
Confidence 9999999 999998 56667766 57999994 9999999888887888999995 3589998 568
Q ss_pred ECCCCccceeccCCccchHHHHHHHH--HHHHHHHHHhcCCCCCCH----HHHHHHHHhhh-hhhHHHhhhccCCCCCcc
Q 008744 385 LGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTE----EELEQTAEAVG-YGAAKYFDLKNNRLTNYT 457 (555)
Q Consensus 385 ~~~~G~kmSkR~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~----~~~~~~a~~vg-~~airy~~L~~~~~~~~~ 457 (555)
++.+|+|||||.|++ ++.++.++++ +...+.+..-| |++ .++ +. .+.++.|++...+.++..
T Consensus 241 l~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG----~s~~~~~~e~------~~~~e~i~~f~~~~i~~~~~~ 309 (492)
T 2cfo_A 241 LNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLG----WSPPEGVGEL------FTLDLAAKHFSFERINKAGAR 309 (492)
T ss_dssp ECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTT----BCCCTTTCSC------CCHHHHHHHCCSTTBCSSCEE
T ss_pred ECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhC----CCCCCccccc------cCHHHHHhhcChhhcCccccc
Confidence 889999999999987 8999998765 34455555433 322 111 11 145789999998889999
Q ss_pred ccccccccccC
Q 008744 458 FSFDQMLNDKG 468 (555)
Q Consensus 458 Fd~~~~~~~~~ 468 (555)
||++++..+|+
T Consensus 310 ~d~~kl~~~N~ 320 (492)
T 2cfo_A 310 FDWDKLNWLNR 320 (492)
T ss_dssp CCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 99999988874
No 32
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.78 E-value=1.7e-18 Score=185.46 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=106.1
Q ss_pred CCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECC
Q 008744 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (555)
Q Consensus 308 ~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~ 387 (555)
.|.||.|+||.|||.. |..++.. ..+++|+ |+|.||..|-++...+.+++|++ .+.+.|+ +++++.
T Consensus 174 ~D~Vl~R~dg~PtY~~---a~vvDD~-~~githv--irG~D~~~~t~~q~~l~~alg~~------~p~~~h~--~li~~~ 239 (468)
T 1j09_A 174 PDVVLLKSDGYPTYHL---ANVVDDH-LMGVTDV--IRAEEWLVSTPIHVLLYRAFGWE------APRFYHM--PLLRNP 239 (468)
T ss_dssp CCCEEECTTSCBCHHH---HHHHHHH-HTTCCEE--EEEGGGGGGHHHHHHHHHHHTCC------CCEEEEE--CCCBCT
T ss_pred CCeEEEecCCCeeehh---HHHHHHH-HCCCCeE--EEChhhhhhHHHHHHHHHHcCCC------CCeEEEe--eeeeCC
Confidence 6899999999999984 5556665 5799998 59999999999998999999995 2578897 568889
Q ss_pred CCccceeccCCccchHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhhh-hhHHHhhhccCCCCCccccccccc
Q 008744 388 DGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGY-GAAKYFDLKNNRLTNYTFSFDQML 464 (555)
Q Consensus 388 ~G~kmSkR~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~-~airy~~L~~~~~~~~~Fd~~~~~ 464 (555)
+|+|||||+|+. ++.+++++++ +...+.+..-| |++.+-. +.+.. +.+..|.+...+.++..||++++.
T Consensus 240 ~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG----~~~~~~~---~~~~~~el~~~f~~~~~~~~~~~~d~~kl~ 311 (468)
T 1j09_A 240 DKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMG----FSMPDGR---EIFTLEEFIQAFTWERVSLGGPVFDLEKLR 311 (468)
T ss_dssp TSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHS----CCCTTCC---SCCCHHHHHHHCCGGGCCCSCCBCCHHHHH
T ss_pred CCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhc----cCCcccc---cCCCHHHHHhhCChhhcCccccccChHHhh
Confidence 999999999988 8999998865 34455555433 2211000 00121 357899999989999999999998
Q ss_pred cccC
Q 008744 465 NDKG 468 (555)
Q Consensus 465 ~~~~ 468 (555)
.+|+
T Consensus 312 ~~N~ 315 (468)
T 1j09_A 312 WMNG 315 (468)
T ss_dssp HHHH
T ss_pred hhcH
Confidence 7763
No 33
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.77 E-value=2.8e-18 Score=184.58 Aligned_cols=137 Identities=16% Similarity=0.110 Sum_probs=107.8
Q ss_pred CCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHc-----CCCCCCCCCCCcEEEEEee
Q 008744 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRA-----GWLSADDSTYPKASHVGFG 382 (555)
Q Consensus 308 ~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~l-----G~~~~~~~~~~~~~Hv~~g 382 (555)
.|.||.|+||.|||. +|..++.. ..+++++| +|.||..+.++...+.++| |++ .+.+.|++
T Consensus 183 ~D~Vi~R~Dg~ptY~---lA~vVDD~-~mgithvi--RG~D~~~~t~~q~~l~~aL~~~g~g~~------~P~~~h~p-- 248 (498)
T 2ja2_A 183 PDFALTRASGDPLYT---LVNPCDDA-LMKITHVL--RGEDLLPSTPRQLALHQALIRIGVAER------IPKFAHLP-- 248 (498)
T ss_dssp CCCBSBCTTSCBCHH---HHHHHHHH-HTTCCEEE--EEGGGGGGHHHHHHHHHHHHHTTSCCC------CCEEEEEC--
T ss_pred CcceeEccCCCcchh---hHHHHHhh-hcCCCEEE--EChhhhhccHHHHHHHHHHHhhcCCCC------CCeEEEee--
Confidence 688999999999999 56667776 57999995 9999999999888888999 984 36889984
Q ss_pred EEECCCCccceeccCCccchHHHHHHHH--HHHHHHHHHhcCCCCCCH---HHHHHHHHhhhhhhHHHhhhccCCCCCcc
Q 008744 383 LVLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTE---EELEQTAEAVGYGAAKYFDLKNNRLTNYT 457 (555)
Q Consensus 383 ~v~~~~G~kmSkR~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~---~~~~~~a~~vg~~airy~~L~~~~~~~~~ 457 (555)
++++.+|+|||||+|+ ++++++.++++ +...+.+..- +|++ .++..+ .+.+..|+++..+.++..
T Consensus 249 lil~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~l----G~s~~~~~e~~s~-----~eli~~f~~~~~~~~~a~ 318 (498)
T 2ja2_A 249 TVLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLALL----GWSIADDHDLFGL-----DEMVAAFDVADVNSSPAR 318 (498)
T ss_dssp CEECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHTS----SCCSCSSCCCCCH-----HHHHHHCCGGGCCCSCEE
T ss_pred eeECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHHh----CCCCCcccccCCH-----HHHHhhCChhhcCccccc
Confidence 5888999999999997 58999999875 3445555433 3332 111111 135889999999999999
Q ss_pred ccccccccccC
Q 008744 458 FSFDQMLNDKG 468 (555)
Q Consensus 458 Fd~~~~~~~~~ 468 (555)
||++++..+|+
T Consensus 319 fd~~kL~~~N~ 329 (498)
T 2ja2_A 319 FDQKKADALNA 329 (498)
T ss_dssp CCHHHHHHHHH
T ss_pred cCHHHHHHhhH
Confidence 99999988875
No 34
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.75 E-value=1.7e-17 Score=180.45 Aligned_cols=139 Identities=17% Similarity=0.241 Sum_probs=109.0
Q ss_pred CCeEEEecCCcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECC
Q 008744 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (555)
Q Consensus 308 ~d~vl~ksDG~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~ 387 (555)
.|+||.|+||.|||. +|..++.. ..+.+|+| .|.||...-++...+.++||++ .|.+.|+ .+|.++
T Consensus 204 ~D~vi~r~dg~PtY~---fA~vVDD~-~mgITHVi--RG~D~l~sTp~q~~l~~alg~~------~P~y~H~--pli~~~ 269 (512)
T 4gri_A 204 PDPVILKSDGLPTYH---LANVVDDY-LMKITHVL--RAQEWVSSGPLHVLLYKAFKWK------PPIYCHL--PMVMGN 269 (512)
T ss_dssp SSCEEECTTSCBCHH---HHHHHHHH-HTTCSEEE--EEGGGGGGHHHHHHHHHHHTCC------CCEEEEE--CCCBCT
T ss_pred CceEEEecCCccccc---ccceeccc-ccCCceec--cccccccccHHHHHHHHHcCCC------CCeEEec--chhccc
Confidence 478999999999996 67777776 57999995 9999998888777888999995 3689998 568999
Q ss_pred CCccceeccCCccchHHHHHHHHH--HHHHHHHHhcCCCCCCHHHHHHHHHhhh-hhhHHHhhhccCCCCCccccccccc
Q 008744 388 DGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKEWTEEELEQTAEAVG-YGAAKYFDLKNNRLTNYTFSFDQML 464 (555)
Q Consensus 388 ~G~kmSkR~G~~v~l~dll~e~~~--~a~~~~~~~~~~~~~~~~~~~~~a~~vg-~~airy~~L~~~~~~~~~Fd~~~~~ 464 (555)
+|+|||||.| ..++.++.++++. +..+.+.-.| |++.+..+ .+. .+.+.+|+++....++..||++++.
T Consensus 270 ~g~kLSKR~~-~~~v~~~~~~G~lPeAl~NyLalLG----ws~~~~~E---ifs~~eli~~Fdl~~v~ks~a~fD~~KL~ 341 (512)
T 4gri_A 270 DGQKLSKRHG-STALRQFIEDGYLPEAIINYVTLLG----WSYDDKRE---FFSKNDLEQFFSIEKINKSPAIFDYHKLD 341 (512)
T ss_dssp TSSBCCTTTS-CCBHHHHHHHTCCHHHHHHHHHHSS----BCSSSSCC---CCCHHHHHHHCCGGGBCSSCCBCCHHHHH
T ss_pred cccccCcccc-cccHHHHHHcCCChHHHHHHHHHhC----CCCcccch---hhhHHHHHHHHHhcCCCCCCccccHHHHH
Confidence 9999999999 4589999999884 5566655433 33211000 011 2367899999999999999999998
Q ss_pred cccC
Q 008744 465 NDKG 468 (555)
Q Consensus 465 ~~~~ 468 (555)
++|+
T Consensus 342 ~~N~ 345 (512)
T 4gri_A 342 FFNS 345 (512)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 35
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.66 E-value=7.4e-17 Score=174.13 Aligned_cols=224 Identities=14% Similarity=0.113 Sum_probs=146.0
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCCCCcccHHHHH
Q 008744 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (555)
.+|+. =-.|+|||+|||||+|++++-..+| .+|.+...--+.|....
T Consensus 95 g~v~t-RFaPsPtG~LHIGhaRtal~n~l~A-----r~~~G~~iLRieDtD~~--------------------------- 141 (553)
T 3aii_A 95 GEVVL-RFAPNPSGPLHIGHARAAILNHEYA-----RKYDGRLILRIEDTDPR--------------------------- 141 (553)
T ss_dssp SCCEE-EECCCSSSSCBHHHHHHHHHHHHHH-----HHTTCEEEEEECCCCGG---------------------------
T ss_pred CceEE-EeCCCCCCCccHHHHHHHHHHHHHH-----HHcCCEEEEEECcCCcc---------------------------
Confidence 34544 6689999999999999999854444 46777777777774321
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eecccccCCcHHHHHHHH
Q 008744 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDEL 286 (555)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f~-~~~es~~~~~~~~v~~~L 286 (555)
+ ..+ .+.+.|.++++.||+..| ....|.|.+...++++.|
T Consensus 142 --------R--~~~-----------------------------e~~~~I~edL~wLGl~wd~~~~qSdr~~~y~~~~~~L 182 (553)
T 3aii_A 142 --------R--VDP-----------------------------EAYDMIPADLEWLGVEWDETVIQSDRMETYYEYTEKL 182 (553)
T ss_dssp --------G--CCT-----------------------------THHHHHHHHHHHHTCCCSEEEEGGGGHHHHHHHHHHH
T ss_pred --------c--ccH-----------------------------HHHHHHHHHHHHcCCCCCCCcccccCHHHHHHHHHHH
Confidence 0 011 122456678888888875 233466666677888888
Q ss_pred HhCCCeeee--------------------------------------cceEEEEecC-------CCCCeEEEec------
Q 008744 287 SKQGLVEES--------------------------------------QGARVIFIEG-------VNIPLIIVKS------ 315 (555)
Q Consensus 287 ~~~g~~~~~--------------------------------------dGa~~~~~~g-------~~~d~vl~ks------ 315 (555)
.++|++|.. +|..++++.. ...|.|+.|.
T Consensus 183 i~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp 262 (553)
T 3aii_A 183 IERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHP 262 (553)
T ss_dssp HHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBT
T ss_pred HHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCCCCcEEEEecCCCCC
Confidence 888888841 0113444432 1247788776
Q ss_pred ---C---CcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCC
Q 008744 316 ---D---GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG 389 (555)
Q Consensus 316 ---D---G~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G 389 (555)
| |.|+|. +|..++.. ..|.+++| .|.||..+-.+...+..++|+. .+.+.|+ ++++ .+|
T Consensus 263 ~~Gd~~~g~PtYh---fa~~vDD~-~~GIThvi--RG~D~~~nt~~Q~~l~~alG~~------~P~y~H~--~~L~-~~g 327 (553)
T 3aii_A 263 RTGTRYRVYPMMN---FSVAVDDH-LLGVTHVL--RGKDHLANREKQEYLYRHLGWE------PPEFIHY--GRLK-MDD 327 (553)
T ss_dssp TTBTSCCEEECHH---HHHHHHHH-HTTCCEEE--C-----CHHHHHHHHHHHHTCC------CCEEECC--CCBC----
T ss_pred ccCCCceeeeeee---eeeeeeec-cCCCceEe--ccHhhhhCHHHHHHHHHHcCCC------CCeEEEe--eEEe-cCC
Confidence 3 355555 67666655 57999996 8999998877776777899984 3567786 6675 589
Q ss_pred ccceeccCC---------------ccchHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHhhhccCC-C
Q 008744 390 KRLRTRFSE---------------VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-L 453 (555)
Q Consensus 390 ~kmSkR~G~---------------~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~ 453 (555)
+|||||+|+ ..++.+|++.+ +.++|||.|+++... .
T Consensus 328 ~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG----------------------------~~PeaIr~fl~~~G~s~ 379 (553)
T 3aii_A 328 VALSTSGAREGILRGEYSGWDDPRLGTLRAIARRG----------------------------IRPEAIRKLMVEIGVKI 379 (553)
T ss_dssp ----CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTT----------------------------CCHHHHHHHHHHHTTCS
T ss_pred ceechhhhhhhccccccccccCcchHHHHHHHHcC----------------------------CCHHHHHHHHHhcCCCC
Confidence 999999986 55677777664 678999999998876 6
Q ss_pred CCccccccccccc
Q 008744 454 TNYTFSFDQMLND 466 (555)
Q Consensus 454 ~~~~Fd~~~~~~~ 466 (555)
++..|+|+.+.+.
T Consensus 380 ~~~~~s~~~L~~~ 392 (553)
T 3aii_A 380 ADSTMSWKKIYGL 392 (553)
T ss_dssp SCBCCCHHHHHHH
T ss_pred ccccccHHHHHHH
Confidence 8899999887543
No 36
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.55 E-value=2.4e-14 Score=154.65 Aligned_cols=264 Identities=12% Similarity=0.044 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHHH
Q 008744 104 NWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGM 183 (555)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~~ 183 (555)
.|+...+.+-|..+.. ++|++ =-.|+|||+|||||+|++++-..+|| +|.+..+--|.|....
T Consensus 9 ~fi~~~i~~dl~~~~~--------~~v~t-RFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~--- 71 (553)
T 1qtq_A 9 NFIRQIIDEDLASGKH--------TTVHT-RFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV--- 71 (553)
T ss_dssp CHHHHHHHHHHHHTSC--------SSCEE-EECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG---
T ss_pred hHHHHHHHhHhhcCCc--------CceEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch---
Confidence 4667777666655432 23443 67899999999999999999666665 5666666666664320
Q ss_pred HHHHHHhhCCCCCCCCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHc
Q 008744 184 LIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRL 263 (555)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L 263 (555)
+ . ...+.+.+.++++.|
T Consensus 72 -------R---------------------------~-----------------------------~~e~~~~I~edL~wL 88 (553)
T 1qtq_A 72 -------K---------------------------E-----------------------------DIEYVESIKNDVEWL 88 (553)
T ss_dssp -------G---------------------------C-----------------------------CHHHHHHHHHHHHHT
T ss_pred -------h---------------------------c-----------------------------CHHHHHHHHHHHHHc
Confidence 0 0 111223455566777
Q ss_pred CCeee--eecccccCCcHHHHHHHHHhCCCeeee--------------------------------------------cc
Q 008744 264 RVDLE--EKGESFYNPYIPGVIDELSKQGLVEES--------------------------------------------QG 297 (555)
Q Consensus 264 gi~f~--~~~es~~~~~~~~v~~~L~~~g~~~~~--------------------------------------------dG 297 (555)
|+..+ ....|.|.+.+.+.++.|.++|++|.. +|
T Consensus 89 Gl~wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g 168 (553)
T 1qtq_A 89 GFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEG 168 (553)
T ss_dssp TCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTT
T ss_pred CCCCCCCCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCC
Confidence 77653 122344444444566666666666631 12
Q ss_pred eEEEEec-------CCCCCeEEEe---------cC---CcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHHH
Q 008744 298 ARVIFIE-------GVNIPLIIVK---------SD---GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFS 358 (555)
Q Consensus 298 a~~~~~~-------g~~~d~vl~k---------sD---G~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~~ 358 (555)
..+++.. ....|.||.| +| |.|+|. +|..++.. ..+.+|+| .|.+|..|-.....
T Consensus 169 ~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~---la~vvDDh-~~GITHvi--Rg~e~~~n~~~q~~ 242 (553)
T 1qtq_A 169 KACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYD---FTHCISDA-LEGITHSL--CTLEFQDNRRLYDW 242 (553)
T ss_dssp SCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHH---HHHHHHHH-HTTCSEEE--EEGGGTTTHHHHHH
T ss_pred ceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccc---cccEEEec-cCCcceEe--eccchhhhHHHHHH
Confidence 2333321 1124778888 66 477887 67666665 57999995 99999998877767
Q ss_pred HHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCC---------------ccchHHHHHHHHH--HHHHHHHHhc
Q 008744 359 AAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE---------------VVRLVDLLDEAKN--RSKAVLIERG 421 (555)
Q Consensus 359 ~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~---------------~v~l~dll~e~~~--~a~~~~~~~~ 421 (555)
+++++|+. ..++..|. +.+ +.+|+|||||+|+ ..++.+++++++. ..++.+..-|
T Consensus 243 l~~alg~~-----~~P~~~~f--~hL-n~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG 314 (553)
T 1qtq_A 243 VLDNITIP-----VHPRQYEF--SRL-NLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIG 314 (553)
T ss_dssp HHHTSCCS-----CCCEEEEE--CCC-CBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHC
T ss_pred HHHHcCCC-----CCCCeEEE--Eee-cCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcC
Confidence 78899984 12333353 555 4689999999986 6789999988652 3444554443
Q ss_pred CCCCCCHHHHHHHHHhhhhhhHHHhhhcc-CCCCCcccccccccccc
Q 008744 422 KDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLNDK 467 (555)
Q Consensus 422 ~~~~~~~~~~~~~a~~vg~~airy~~L~~-~~~~~~~Fd~~~~~~~~ 467 (555)
-...-..-++..+. ..+| ++|.. .+.+...||+.++...|
T Consensus 315 ~s~~~~~~e~~~le-----~~~~-~~l~~~~~r~~av~d~~Kl~~~N 355 (553)
T 1qtq_A 315 VTKQDNTIEMASLE-----SCIR-EDLNENAPRAMAVIDPVKLVIEN 355 (553)
T ss_dssp CCSSCCCBCHHHHH-----HHHH-HHHHHHSCEECEESSEEEEEBTT
T ss_pred CCCCccccchhhHH-----HHHH-hCcccccccccceeccceEEEEc
Confidence 22111101122211 1455 56666 56777788887776655
No 37
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.52 E-value=5e-14 Score=158.34 Aligned_cols=214 Identities=14% Similarity=0.017 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHHH
Q 008744 103 KNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFG 182 (555)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~~ 182 (555)
..|+...+..-+..+.. ++|+. =-.|+|||+|||||+|++++-..+|| +|.+..+--|.|....
T Consensus 48 ~~fi~~ii~~dl~~g~~--------~~v~t-RFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~-- 111 (851)
T 2hz7_A 48 PNFITEIIERDLEAGKY--------PRVVT-RFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE-- 111 (851)
T ss_dssp CCHHHHHHHHHHHTTSC--------SSCEE-EECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT--
T ss_pred HHHHHHHHHHHhhcCCc--------CceEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc--
Confidence 35777777776654422 23433 56899999999999999999555555 5667777767774320
Q ss_pred HHHHHHHhhCCCCCCCCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008744 183 MLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKR 262 (555)
Q Consensus 183 ~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~ 262 (555)
+ . ...+.+.|.++++.
T Consensus 112 ---------------------------------R--~-----------------------------~~e~~~~IledL~w 127 (851)
T 2hz7_A 112 ---------------------------------L--A-----------------------------RQEYVDSIADDLKW 127 (851)
T ss_dssp ---------------------------------T--C-----------------------------CHHHHHHHHHHHHH
T ss_pred ---------------------------------c--c-----------------------------cHHHHHHHHHHHHH
Confidence 0 0 11223456668888
Q ss_pred cCCeee--eecccccCCcHHHHHHHHHhCCCeeeec----------------c---------------------------
Q 008744 263 LRVDLE--EKGESFYNPYIPGVIDELSKQGLVEESQ----------------G--------------------------- 297 (555)
Q Consensus 263 Lgi~f~--~~~es~~~~~~~~v~~~L~~~g~~~~~d----------------G--------------------------- 297 (555)
||+..+ ....|.|.+...++++.|.++|++|... |
T Consensus 128 LGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~ 207 (851)
T 2hz7_A 128 LGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFAD 207 (851)
T ss_dssp HTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCT
T ss_pred cCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCccc
Confidence 888763 2334555566677788888888877410 1
Q ss_pred -eEEEEec-------CCCCCeEEEecC------------CcccccchhHHHHHHHhhhcCCCeEEEEeeCCccccHHHHH
Q 008744 298 -ARVIFIE-------GVNIPLIIVKSD------------GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVF 357 (555)
Q Consensus 298 -a~~~~~~-------g~~~d~vl~ksD------------G~~tY~~~DiA~~~~r~~~~~~d~iI~V~g~dq~~hf~~~~ 357 (555)
..++++. ....|.|+.|++ |.|+|. +|..++.. ..+.+|+| .|.||..|-....
T Consensus 208 g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYh---fA~vVDD~-~~GITHVi--RG~D~~~n~~~q~ 281 (851)
T 2hz7_A 208 GEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYD---FEHPLQDA-IEGVTHSM--CSLEFVDNRAIYD 281 (851)
T ss_dssp TSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHH---HHHHHHHH-HHTCSEEE--EEGGGTTTHHHHH
T ss_pred CCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCCccccccc---eeeEeeec-cCCcceee--cchhhhhChHHHH
Confidence 1233321 011477888886 345555 67666655 57899996 9999999877776
Q ss_pred HHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCC---------------ccchHHHHHHHH
Q 008744 358 SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE---------------VVRLVDLLDEAK 410 (555)
Q Consensus 358 ~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~---------------~v~l~dll~e~~ 410 (555)
.+.+++|+. ..+...| |+.+. .+|.|||||+|+ ..++.+|+++++
T Consensus 282 ~l~~alG~~-----~~P~~~~--fahLn-~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy 341 (851)
T 2hz7_A 282 WLMEKLNFD-----PRPHQYE--FGRRG-LEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGV 341 (851)
T ss_dssp HHHHHTTCS-----SCCEEEE--ECCEE-ETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTC
T ss_pred HHHHHcCCC-----CCCCceE--EEEec-CCCccccccccccccccCcccCCCCcchhHHHHHHHcCC
Confidence 778999984 1133334 35565 578999999986 567889988864
No 38
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.25 E-value=1.3e-06 Score=89.52 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=49.3
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHHH
Q 008744 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 405 (555)
Q Consensus 335 ~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~dl 405 (555)
.+++|.+ ++|.||..|+..-..++..+|+. .+...|. .++.+.+|+|||||.||+|.+.|-
T Consensus 168 ~~~~~~v--~~G~DQ~~~~~l~rdla~~~~~~------~p~~l~~--pll~~l~G~KMSKS~~n~I~l~d~ 228 (323)
T 2cyb_A 168 HLGVDLA--VGGIDQRKIHMLARENLPRLGYS------SPVCLHT--PILVGLDGQKMSSSKGNYISVRDP 228 (323)
T ss_dssp HTTCSEE--EEEGGGHHHHHHHHHHGGGGTCC------CCEEEEE--CCCBCTTSSBCCTTTTCSCBTTCC
T ss_pred hcCCCEE--EechhhHHHHHHHHHHHHhcCCC------CceEEec--CcccCCCCCcccCCcCceeCCCCC
Confidence 4688877 49999999999888888889884 2445565 568888999999999999998754
No 39
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=2.2e-05 Score=82.43 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=41.6
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCC-CccceeccCCc-cchHHHHHH
Q 008744 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-GKRLRTRFSEV-VRLVDLLDE 408 (555)
Q Consensus 335 ~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~-G~kmSkR~G~~-v~l~dll~e 408 (555)
.++++.++ +|.||..|+.....++.++|+. .+...|. .+|.+.+ |+|||||.|+. |.|.|=-++
T Consensus 180 ~~~~~~v~--~G~DQ~~~~~l~rdl~~r~~~~------~p~~l~~--pll~gl~~G~KMSKS~~ns~I~L~D~p~~ 245 (394)
T 2dlc_X 180 FLDVDCQF--GGVDQRKIFVLAEENLPSLGYK------KRAHLMN--PMVPGLAQGGKMSASDPNSKIDLLEEPKQ 245 (394)
T ss_dssp HTTCSEEE--EEGGGHHHHHHHHHHGGGGTCC------CCEEEEE--CCCCCCC----------CCSCBTTCCHHH
T ss_pred hhCCCEEe--cCccHHHHHHHHHHHHHHcCCC------CCEEEec--ccccCCCCCCcCCCCCCCCEEeccCCHHH
Confidence 36788774 8999999999888889999984 3455665 4687888 99999999996 988754444
No 40
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=97.95 E-value=9.5e-06 Score=84.55 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=41.4
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCC-ccchHHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE-VVRLVDL 405 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~-~v~l~dl 405 (555)
+++|.++ +|.||..|+..-..++.++|+. .+...|. .+|.+.+|+|||||.|+ .|.|.|=
T Consensus 177 ~~a~~v~--~G~DQ~~~~~l~rdl~~r~~~~------~p~~l~~--pll~gldG~KMSKS~~ns~I~L~d~ 237 (372)
T 1n3l_A 177 LKVDAQF--GGIDQRKIFTFAEKYLPALGYS------KRVHLMN--PMVPGLTGSKMSSSEEESKIDLLDR 237 (372)
T ss_dssp TTCSEEE--EEGGGHHHHHHHHHHGGGGTCC------CCEEEEE--CCCCCSSCC-------CCSCBTTCC
T ss_pred hcCCEEE--cChhHHHHHHHHHHHHHHcCCC------CCEEEec--CccCCCCcccccCCCCCCeEeccCC
Confidence 6788775 8999999999888888999984 2445565 56888899999999999 7888754
No 41
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=97.42 E-value=0.00035 Score=71.06 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=41.2
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCC-ccceeccCCccchHHHHHHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG-KRLRTRFSEVVRLVDLLDEA 409 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G-~kmSkR~G~~v~l~dll~e~ 409 (555)
++++.++ +|.||..|+.....+ .- + .+...|. .+|.+.+| +|||||.|++|.|.|=-++.
T Consensus 162 ~~~~~v~--~G~DQ~~~~~l~R~i----~~-~-----~~~~~~~--~~l~~l~G~~KMSKS~~~~I~L~d~~~~i 222 (314)
T 2zp1_A 162 LGVDVAV--GGMEQRKIHMLAREL----LP-K-----KVVCIHN--PVLTGLDGEGKMSSSKGNFIAVDDSPEEI 222 (314)
T ss_dssp HTCSEEE--EEGGGHHHHHHHHHH----SS-S-----CCEEEEE--CCCBCTTSSSBCCTTTTCSCBTTCCHHHH
T ss_pred hCCCEEE--cChhHHHHHHHHHHh----cC-C-----CcEEeec--cccccCCcccccCCCCcceecCCCCHHHH
Confidence 4788775 899999887533332 21 1 2344554 46778889 79999999999987654543
No 42
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=97.39 E-value=0.00035 Score=72.45 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=45.8
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCC-----------------Cccceec-c
Q 008744 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-----------------GKRLRTR-F 396 (555)
Q Consensus 335 ~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~-----------------G~kmSkR-~ 396 (555)
.+++|.++ +|.||..|+..-..++..+|+. .+...|. .+|.+.+ |+||||| .
T Consensus 175 ~~~~~~v~--~G~DQ~~~~~l~rdla~r~~~~------~p~~l~~--~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~ 244 (364)
T 2cya_A 175 YMDLDIAL--GGMDQRKAHMLARDVAEKLGRK------KPVAIHT--PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244 (364)
T ss_dssp HTTCSEEE--EEGGGHHHHHHHHHHHTTTTCC------CCEEEEE--CCCBCSSCC----------------CBCCSSSG
T ss_pred hcCCCEEe--ccchHHHHHHHHHHHHHHcCCC------Cceeecc--ceeeCCCcccccccccccccccccccccCCCCC
Confidence 36788774 9999999999888888889873 2344554 4566666 7899999 6
Q ss_pred CCccchHHH
Q 008744 397 SEVVRLVDL 405 (555)
Q Consensus 397 G~~v~l~dl 405 (555)
|+.|.|.|=
T Consensus 245 ~~~I~L~d~ 253 (364)
T 2cya_A 245 ETAVFVVDS 253 (364)
T ss_dssp GGSCBTTCC
T ss_pred CCEeeccCC
Confidence 888988754
No 43
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=96.75 E-value=0.0047 Score=69.04 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=46.4
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECC-CC-ccceeccC-CccchHHHHHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRFS-EVVRLVDLLDE 408 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~-~G-~kmSkR~G-~~v~l~dll~e 408 (555)
+++|.+ .+|.||..|+..-..++..+|..+ .+.+.|. .+|.+- +| +|||||.| +.|.|.|=-++
T Consensus 182 ~~ad~v--pvG~DQ~~~l~l~Rdla~r~n~~~-----~p~~l~~--~~l~gL~dG~~KMSKS~~~~~I~L~D~p~~ 248 (690)
T 3p0j_A 182 LKADIC--QLGLDQRKVNMLAREYCDLIGRKL-----KPVILSH--HMLAGLKQGQAKMSKSDPDSAIFMEDTEED 248 (690)
T ss_dssp TTCSEE--CCBGGGHHHHHHHHHHHHHTTCCC-----CCEEEEB--CCCCCSSTTCSSCBTTBGGGSCBTTCCHHH
T ss_pred hCCCEE--eccccHHHHHHHHHHHHHHhCCCC-----CceEeec--CeeecCCCCCcCCCCCCCCCeeeccCCHHH
Confidence 467865 489999999998888999999742 2333443 467766 78 49999998 68887654444
No 44
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=96.63 E-value=0.0036 Score=64.96 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=40.6
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceecc-CCccchHH
Q 008744 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF-SEVVRLVD 404 (555)
Q Consensus 344 V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~-G~~v~l~d 404 (555)
-+|.||..|+..-..++..+|.... ...+...|. .++.+.+|+|||||. ++.|.+.|
T Consensus 213 PVG~DQ~~hleltRdiA~rfn~~~~--~~~P~~~~~--~~~pgldG~KmS~S~~ns~I~l~D 270 (372)
T 3a04_A 213 PVGADQDPHLRLTRDLADRMAGVVE--LERPASTYH--KLQPGLDGRKMSSSRPDSTIFLTD 270 (372)
T ss_dssp EEEGGGHHHHHHHHHHHHHTTTTSC--CCCCEEEEE--CCCBCTTSSBCCTTSGGGSCBTTC
T ss_pred ccchhhHHHHHHHHHHHHHhcCccc--ccChhhhhh--cccCCCCCCccCCCCCCcccccCC
Confidence 5899999999988888988874211 123445554 456778999999987 45677654
No 45
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.86 E-value=0.0052 Score=63.35 Aligned_cols=60 Identities=10% Similarity=-0.022 Sum_probs=34.8
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHH
Q 008744 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 335 ~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
.+++|.+ ++|.||..|+..-..++..+|..+ +. .+...++.+.+|+|||||.||+|.|.|
T Consensus 208 ~~~~~i~--p~G~DQ~~~i~l~rdla~r~n~~~------~~--~l~~pll~~ldG~KMSKS~~naI~L~d 267 (356)
T 2pid_A 208 RYGCRVQ--LGGSDQLGNIMSGYEFINKLTGED------VF--GITVPLITSTTGAKLGKSAGNAVWLNR 267 (356)
T ss_dssp HHCCCEE--EEEGGGHHHHHHHHHHHHHHSSCC------CE--EEEECCCC-------------CCBSST
T ss_pred cCCCcEE--eccHHHHHHHHHHHHHHHHhCCCC------cc--ccccccccCCCcccccCCCCCeeeccC
Confidence 3478866 489999999999889999998731 22 333456777899999999999999876
No 46
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=95.34 E-value=0.012 Score=62.09 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=47.2
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCC-ccchHH
Q 008744 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE-VVRLVD 404 (555)
Q Consensus 335 ~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~-~v~l~d 404 (555)
.++++.+ ++|.||..|+..-..++..+|..+ + ..+...++.+.+|+|||||.|| +|.|+|
T Consensus 185 ~~~~~i~--~gG~DQ~~ni~lgrdlarr~~~~~------~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d 245 (432)
T 2jan_A 185 RHGCTLQ--IGGADQWGNIIAGVRLVRQKLGAT------V--HALTVPLVTAADGTKFGKSTGGGSLWLDP 245 (432)
T ss_dssp HHCCCEE--EECSTTHHHHHHHHHHHHHHHCCC------C--EEEECCCCBCTTSCBTTBCSSSCBCBSST
T ss_pred cCCCcEE--eccHHHHHHHHHHHHHHHHhCCCC------c--cccccccccCCCcCcCCCCCCCCeEEccC
Confidence 3578866 489999999998888888888731 2 2333456888899999999999 998876
No 47
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=95.31 E-value=0.0084 Score=60.99 Aligned_cols=59 Identities=12% Similarity=0.025 Sum_probs=45.9
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
++++ |=++|.||..|+..-..++..+|..+ ...+...++.+.+|+|||||.||+|.|.|
T Consensus 190 ~~~~--v~~gG~DQ~~~i~l~rdla~r~n~~~--------~~~l~~pll~gldG~KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 190 YGVV--LCIGGSDQWGNITSGIDLTRRLHQNQ--------VFGLTVPLITKADGTKFGKTEGGAVWLDP 248 (322)
T ss_dssp HCEE--EEEECTTCHHHHHHHHHHHHHHHCCC--------CEEEECCCCBCTTSCBTTEETTEECBSST
T ss_pred CCce--EEecCchhHHHHHHHHHHHHHhCCCC--------ceeeccCccCCCCcccccCCCCCeeeccC
Confidence 3565 44679999999998888898888731 13334456788899999999999999986
No 48
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=95.20 E-value=0.014 Score=61.40 Aligned_cols=59 Identities=20% Similarity=0.090 Sum_probs=46.0
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~l-G~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
++++.. ++|.||..|+..-..++..+ |.. .+...+ ..++.+.+|+|||||.||+|.|+|
T Consensus 185 ~~~~i~--~gG~DQ~~ni~~grdla~r~~~~~------~~~~l~--~pll~~ldG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 185 LNCKIQ--VGGSDQWGNITSGIELMRRMYGQT------DAYGLT--IPLVTKSDGKKFGKSESGAVWLDA 244 (420)
T ss_dssp HCEEEE--EEEGGGHHHHHHHHHHHHHHHCCC------CCEEEE--ECCCBCTTSCBTTBCSSSBCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhcCCC------CeeEee--cccccCCccccccCCCCCeEecCC
Confidence 466644 48999999999888889888 763 122333 456888899999999999999886
No 49
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=95.15 E-value=0.013 Score=61.76 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=45.0
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~l-G~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
++++.. ++|.||..|+..-..++..+ |.. .+...+ ..++.+.+|+|||||.||+|.|+|
T Consensus 184 ~~~~i~--~gG~DQ~~ni~lgrdlarr~~~~~------~~~~lt--~pll~~ldG~KMSKS~~naI~L~d 243 (419)
T 2ts1_A 184 EGCRLQ--IGGSDQWGNITAGLELIRKTKGEA------RAFGLT--IPLVTKADGTKFGKTESGTIWLDK 243 (419)
T ss_dssp HCEEEE--EEEGGGHHHHHHHHHHHHHHHC--------CCEEEE--ECCCCCTTSCCTTCCSSCCCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhcCCC------Ceeecc--cccccCCCcccccCCCCCeEecCC
Confidence 466654 48999999999888888888 762 122333 456888899999999999999886
No 50
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=94.76 E-value=0.025 Score=59.73 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=46.2
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCc-cceeccCCccchHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVD 404 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~-kmSkR~G~~v~l~d 404 (555)
+++|.+ .+|.||..|+..-..++..+|..+ +...| ..++.+.+|. |||||.||+|.|.|
T Consensus 186 l~~~l~--~gG~DQ~~ni~l~rdlarr~~~~~------~~~lt--~pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 186 IRADVE--MGGTDQRFNLLVGREVQRAYGQSP------QVCFL--MPLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp HTCSEE--EEEGGGHHHHHHHHHHHHHTTCCC------CEEEE--ECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred cCccEE--EechHHHHHHHHHHHHHHHhCCCC------ceEee--cccccCCCCccccCcCCCCeeCCCC
Confidence 457766 499999999998888889998742 22233 4568888996 99999999999987
No 51
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=94.75 E-value=0.0086 Score=61.35 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=45.1
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHH
Q 008744 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 335 ~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
.+++|.++ +|.||..|+..-..++..++..-...-..+...+....+|.+.+|+|||||.||.|.|.|
T Consensus 151 ~~~~~~vp--vG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d 218 (340)
T 2g36_A 151 IYKAEGVP--VGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI 218 (340)
T ss_dssp TTTCSEEE--ECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC
T ss_pred HhCCCEEE--cccchHHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeeeC
Confidence 36788774 999999999987777776642100000122322211346777889999999999999876
No 52
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=94.70 E-value=0.05 Score=57.45 Aligned_cols=64 Identities=13% Similarity=0.160 Sum_probs=42.1
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCC--ccceeccCC-ccchHHHHHHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEA 409 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G--~kmSkR~G~-~v~l~dll~e~ 409 (555)
++++.+ .+|.||..|+..-..++..+|++ .+...|. .+|.+.+| +|||||.|| .|.|.|=-++.
T Consensus 248 ~~~~lv--p~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~--~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i 314 (432)
T 2ip1_A 248 KTPCLI--PCAIDQDPYFRVCRDVADKLKYS------KPALLHS--RFFPALQGSTTKMSASDDTTAIFMTDTPKQI 314 (432)
T ss_dssp TCCEEE--EEEGGGHHHHHHHHHHHHHHTSC------CCEEEEE--CCCCCTTC--------CGGGCCBTTCCHHHH
T ss_pred CCceEE--EeccCcHHHHHHHHHHHHHhCCC------Cceeecc--ccccCCCCCccccCCCCCCCeEeccCCHHHH
Confidence 345544 48999999999888889999974 2334444 56888889 899999999 89887644443
No 53
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=94.54 E-value=0.013 Score=60.04 Aligned_cols=62 Identities=23% Similarity=0.274 Sum_probs=44.9
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHc----C--CCCCCCCCCCcEEEEEe-eEEECCCC-ccceeccCCccchHHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRA----G--WLSADDSTYPKASHVGF-GLVLGEDG-KRLRTRFSEVVRLVDL 405 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~l----G--~~~~~~~~~~~~~Hv~~-g~v~~~~G-~kmSkR~G~~v~l~dl 405 (555)
+++|.++ +|.||..|+..-..++..+ | +. .+...|... .+|.+.+| +|||||.||.|.|.|=
T Consensus 140 ~~~~lvp--~G~DQ~~~i~l~rdla~r~n~~~g~~f~------~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d~ 209 (337)
T 2el7_A 140 YKADTVP--VGEDQVQHIELTREIARRFNHLFGETFP------EPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLEP 209 (337)
T ss_dssp TTCCEEE--CCGGGCHHHHHHHHHHHHHHHHHSSCCC------CCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSSC
T ss_pred hCCcEEE--cccchHHHHHHHHHHHHHHHhhcCcccC------CCeeecccccccccCCCCccccCCCCCCeeeCcCC
Confidence 6788764 9999999999777777654 5 31 234444311 36777889 8999999999988753
No 54
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=94.08 E-value=0.05 Score=58.18 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=45.3
Q ss_pred eeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCC--ccceeccCC-ccchHHHHHHHHH
Q 008744 345 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEAKN 411 (555)
Q Consensus 345 ~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G--~kmSkR~G~-~v~l~dll~e~~~ 411 (555)
+|.||..|+..-..++..+|++ .+...|. -+|.+.+| +|||||.|| .|.|.|=-++...
T Consensus 309 vG~DQ~~~i~l~Rdla~r~~~~------~p~~l~~--pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~k 370 (477)
T 1r6t_A 309 CAIDQDPYFRMTRDVAPRIGYP------KPALLHS--TFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 370 (477)
T ss_dssp EEGGGHHHHHHHHHHGGGGTCC------CCEEEEE--CCCEETTEEEEECCTTSTTCCCBTTCCHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhCCC------Cceeeec--ccccCCCCCccccCCCCCCCceeecCCHHHHHH
Confidence 7999999999888888999973 2334454 46888889 799999999 8988765555433
No 55
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=94.06 E-value=0.013 Score=59.52 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=44.7
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEE-EeeEEECCCCccceeccCCccchHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHV-GFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv-~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
+++|.+. +|.||..|+..-..++..+|..-+..-..+...|. ...+|.+-+|+|||||.||.|.|.|
T Consensus 138 ~~~~~vp--vG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d 205 (322)
T 3tzl_A 138 FDTRIVP--VGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS 205 (322)
T ss_dssp TTCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC
T ss_pred hCCcEEE--eccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC
Confidence 5788764 99999999987777777765300000012233331 1346777899999999999998865
No 56
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=93.65 E-value=0.024 Score=58.29 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=43.3
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEEEeeEEECCCCc-cceeccCCccchHHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVDL 405 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~-~~~~~~~~~~~Hv~~g~v~~~~G~-kmSkR~G~~v~l~dl 405 (555)
++++.++ +|.||..|+..-..++..++.. .+. -..+...+....+|.+.+|. |||||.||.|.|.|=
T Consensus 161 ~~~~~vp--vG~DQ~~hi~l~rdia~r~n~~yg~~-f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~ 229 (351)
T 1yi8_B 161 FGATLVP--VGDDQLPMLEQTREIVRRFNALYAPV-LAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS 229 (351)
T ss_dssp HTCSEEE--ECGGGHHHHHHHHHHHHHHHHHTCSC-SCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC
T ss_pred cCCCEEE--ecCCcHHHHHHHHHHHHHHHhhcccc-cCCCeeeeecCccccCCCCccccCCCCCCeecCCCC
Confidence 5788774 9999999999777777655310 000 01233222112467777896 999999999988643
No 57
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=93.54 E-value=0.029 Score=58.52 Aligned_cols=65 Identities=9% Similarity=0.022 Sum_probs=43.3
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCC-----------CCCCCCCCCcEEEEEeeEEECCCCccceeccCCccchHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGW-----------LSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~-----------~~~~~~~~~~~~Hv~~g~v~~~~G~kmSkR~G~~v~l~d 404 (555)
++++.+ ++|.||..|+..-..+++.++. .|.- +. .....+...+|.+.+|+|||||.||.|.|+|
T Consensus 231 ~~~~i~--~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l-~~-~~~~~l~~pll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 231 QGVQMQ--IGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKT-AL-DECVGFTVPLLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp HCEEEE--EECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCS-GG-GSCEEEECCCCBCTTCCBTTBCSSSBCBSST
T ss_pred CCccEE--ecCcchHhHHHHHHHHHHHHhhhcccccccccccccc-cc-CCccccccccCcCCchhhccCCCCCeeeccC
Confidence 466655 4899999999877777655421 1100 00 1123334457888899999999999999875
No 58
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=92.43 E-value=0.049 Score=56.82 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=32.5
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCC--ccceeccCCccchHHH
Q 008744 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSEVVRLVDL 405 (555)
Q Consensus 344 V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G--~kmSkR~G~~v~l~dl 405 (555)
.+|.||..|+..-..++..+|++ .+...|. .++.+-+| +|||||.|+.|.|.|=
T Consensus 229 p~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~--~~l~gLdG~~~KMSKS~~~~I~L~D~ 284 (395)
T 3i05_A 229 PQAIDQDPYFRLTRDIAPRLGYL------KPAVIHS--KFFPGLSGPKGKMSSSSGTAVLLTDT 284 (395)
T ss_dssp EEEGGGHHHHHHHHHTHHHHTCC------CCEEEEE--CCCCCC-------------CCBTTCC
T ss_pred EeccchHHHHHHHHHHHHHcCCC------Cceeecc--ccccCCCCCcccCCCCCCCcccCCCC
Confidence 58999999999888889999984 2334454 45777788 6999999999988653
No 59
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=92.41 E-value=0.039 Score=58.28 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=43.1
Q ss_pred eeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCC--ccceeccCC-ccchHHHHHH
Q 008744 345 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDE 408 (555)
Q Consensus 345 ~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G--~kmSkR~G~-~v~l~dll~e 408 (555)
+|.||..|+..-..++..+|++ .+...|. .+|.+.+| +|||||.|| .|.|.|==++
T Consensus 262 vG~DQ~~~i~l~Rdla~r~~~~------~P~~l~~--pll~gLdG~~~KMSKS~~nsaI~L~D~p~~ 320 (437)
T 1r6u_A 262 CAIDQDPYFRMTRDVAPRIGYP------KPALLHS--TFFPALQGAQTKMSASDPNSSIFLTDTAKQ 320 (437)
T ss_dssp EEGGGHHHHHHHHHHGGGGTCC------CCEEEEE--CCCEETTEEEEECCTTSSSSCCBTTCCHHH
T ss_pred eehhhHHHHHHHHHHHHHhCCC------CceEeec--ccccCCCCCccccCCCCCCCeeeccCCHHH
Confidence 7999999998888888899973 2334444 46788889 799999999 8988754333
No 60
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=92.24 E-value=0.097 Score=54.70 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=41.9
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCC--ccceecc-CCccchHHH
Q 008744 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRF-SEVVRLVDL 405 (555)
Q Consensus 344 V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G--~kmSkR~-G~~v~l~dl 405 (555)
.+|.||..|+..-..++..+|++ .+...|. .+|.+-+| +|||||. |+.|.|.|=
T Consensus 248 pvG~DQ~~~i~l~Rdla~r~~~~------~p~~l~~--~~l~gLdG~~~KMSKS~~~~~I~L~D~ 304 (406)
T 3tze_A 248 PAAVDQDPFFRLARDKAKALGEK------KPSSIYV--SLLPDLKGVNRKMSASDPNSSIYLDDA 304 (406)
T ss_dssp EEEGGGHHHHHHHHHHHHHHTCC------CCEEEEE--CCCCCTTSCCCCSSCSCGGGSCBTTCC
T ss_pred eeccchHHHHHHHHHHHHHcCCC------Cceeecc--CcccCCCCCCcCCCCCCCCCcccCCCC
Confidence 48999999999888889999984 2344454 45777788 6999998 688988643
No 61
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=92.22 E-value=0.038 Score=56.71 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=44.9
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcC------CCCCCCCCCCcEEEEE-eeEEECCCC--ccceeccCC---ccch
Q 008744 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAG------WLSADDSTYPKASHVG-FGLVLGEDG--KRLRTRFSE---VVRL 402 (555)
Q Consensus 335 ~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG------~~~~~~~~~~~~~Hv~-~g~v~~~~G--~kmSkR~G~---~v~l 402 (555)
.+++|.++ +|.||..|+..-..++..+| +. .+...|.. ..+|.+-+| +|||||.|| +|.|
T Consensus 145 ~~~a~~vp--vG~DQ~~~lel~Rdia~r~n~~yg~~f~------~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L 216 (348)
T 2yy5_A 145 LYQPDIVP--VGNDQKQHLELTRDLAQRIQKKFKLKLR------LPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYL 216 (348)
T ss_dssp TTCCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCCCCC------CCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBT
T ss_pred HhCccEEE--ecccHHHHHHHHHHHHHHhhhhcccccC------CCeeecccccccccCCCCcchhcCCCCCCCCceEee
Confidence 46888775 99999999988777777764 21 23333321 134555667 899999999 7888
Q ss_pred HHHHHH
Q 008744 403 VDLLDE 408 (555)
Q Consensus 403 ~dll~e 408 (555)
.|=-++
T Consensus 217 ~D~~~~ 222 (348)
T 2yy5_A 217 DDPKEV 222 (348)
T ss_dssp TCCHHH
T ss_pred cCCHHH
Confidence 654333
No 62
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=92.11 E-value=0.068 Score=54.38 Aligned_cols=72 Identities=14% Similarity=0.064 Sum_probs=44.6
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEE-EeeEEECCCC--ccceeccCC-c--cchHHHHHH
Q 008744 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHV-GFGLVLGEDG--KRLRTRFSE-V--VRLVDLLDE 408 (555)
Q Consensus 335 ~~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv-~~g~v~~~~G--~kmSkR~G~-~--v~l~dll~e 408 (555)
.+++|.++ +|.||..|+..-..++..+|..-...-..+...+. ...+|.+.+| +|||||.|| . |.|.|=-++
T Consensus 135 ~~~~~~vp--vG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~ 212 (328)
T 1i6k_A 135 LYNTDIVP--VGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKT 212 (328)
T ss_dssp TTTCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHH
T ss_pred HhCCCEEe--cccchHHHHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHH
Confidence 36788774 99999999998777877766200000001222221 1134666777 899999999 6 887654333
No 63
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=91.80 E-value=0.14 Score=52.94 Aligned_cols=64 Identities=9% Similarity=0.056 Sum_probs=46.2
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECC-CCc-cceecc-CCccchHHHHHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DGK-RLRTRF-SEVVRLVDLLDE 408 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~-~G~-kmSkR~-G~~v~l~dll~e 408 (555)
+++|.+ .+|.||..|+..-..++..+|..+ .+.+.|. .+|.+- +|. |||||. |+.|.|.|=-++
T Consensus 199 l~ad~v--pgG~DQ~~~l~l~Rdla~r~~~~~-----~~~~l~~--p~l~gL~dG~~KMSKS~~~~~I~L~D~p~~ 265 (373)
T 3vgj_A 199 LNVDIC--QLGIDQRKVNMLAREYCDIKKIKK-----KPVILSH--GMLPGLLEGQEKMSKSDENSAIFMDDSESD 265 (373)
T ss_dssp TTCSEE--CCBGGGHHHHHHHHHHHHHHTCSC-----CCEEEEB--CCCCCSSTTCCSCCSSSTTCCCBTTCCHHH
T ss_pred cCCcEE--EcchhhHHHHHHHHHHHHHhCCCC-----CceEEeC--CeeecCCCCCCCCcCCCCCCeeecCCCHHH
Confidence 577865 489999999998888999999742 2333443 467764 884 999999 578888644333
No 64
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=91.68 E-value=0.077 Score=55.27 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=32.7
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCC--ccceeccCC-ccchHHHHH
Q 008744 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLD 407 (555)
Q Consensus 344 V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G--~kmSkR~G~-~v~l~dll~ 407 (555)
.+|.||..|+..-..++..+|++ .+...|. .++.+-+| +|||||.|| .|.|.|=-+
T Consensus 225 p~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~--~~l~gLdG~~~KMSKS~~nsaI~L~D~p~ 283 (393)
T 3hv0_A 225 PHAIDQDPYFRMVRDVAPRLGYL------KPSSIHS--IFLPSLQGSQTKMSASVQNSSIFVNDNEE 283 (393)
T ss_dssp EEEGGGHHHHHHHHHHTGGGTCC------CCEEEEE--CCCCC-------------CCCCBTTCCHH
T ss_pred ccccchHHHHHHHHHHHHHcCCC------Cceeecc--CcccCCCCCCcCCCCCCCCCeEeccCCHH
Confidence 58999999999888888899984 2334454 45777788 799999987 888864333
No 65
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=91.01 E-value=0.17 Score=52.49 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=40.9
Q ss_pred eeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCc-cceec-cCCccchHH
Q 008744 345 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTR-FSEVVRLVD 404 (555)
Q Consensus 345 ~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~-kmSkR-~G~~v~l~d 404 (555)
+|.||..|+..-..++..+|+++ +.+.|. .+|.+-+|. ||||| .|+.|.|.|
T Consensus 230 vG~DQ~~hl~l~Rdla~r~n~~~------p~~l~~--~~l~gLdG~~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 230 DSIKNVQFHSIIDQIATTLNFIQ------PTVLFH--KMVPLLSGVTKFDIPSDHNSILLSD 283 (386)
T ss_dssp EEGGGHHHHHHHHHHHHHHTCCC------CEEEEE--CCCCCTTCTTCCCCCCTTTSCBTTC
T ss_pred cccchHHHHHHHHHHHHHcCCCC------ceEeec--CeeeCCCCCCccCcCCCCCeeecCC
Confidence 59999999998889999999842 333444 457777885 99999 799998865
No 66
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=90.80 E-value=0.13 Score=53.63 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=44.9
Q ss_pred CCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCC--ccceeccCC-ccchHHHHHH
Q 008744 338 AEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDE 408 (555)
Q Consensus 338 ~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G--~kmSkR~G~-~v~l~dll~e 408 (555)
++.+ .+|.||..|+..-..++..+|+. .+...|. .+|.+-+| +|||||.+| .|.|.|=-++
T Consensus 208 a~~v--pvG~DQ~~hl~l~Rdla~r~n~~------~p~~l~~--~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~ 271 (392)
T 3jxe_A 208 RCLI--PAAIDQDPYWRLQRDFAESLGYY------KTAALHS--KFVPSLTSLSGKMSASKPETAIYLTDSPED 271 (392)
T ss_dssp CEEE--EEEGGGHHHHHHHHHHTGGGTSC------CCEEEEE--CCCCCSSCSSSCCCTTSGGGCCBTTCCHHH
T ss_pred Ccee--ecccchHHHHHHHHHHHHHcCCC------CCeeeec--ccccCCCCCccccccCCCCCeeeCCCCHHH
Confidence 4444 68999999999888888999973 2344554 45777777 599999998 8887654344
No 67
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=90.69 E-value=0.15 Score=52.26 Aligned_cols=63 Identities=11% Similarity=0.066 Sum_probs=45.9
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECC-CC-ccceecc-CCccchHHHHHHH
Q 008744 337 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRF-SEVVRLVDLLDEA 409 (555)
Q Consensus 337 ~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~-~G-~kmSkR~-G~~v~l~dll~e~ 409 (555)
++|.++ +|.||..|+..-..++..+|+. .+.+.|. .+|.+- +| +|||||. |+.|.|.|=-++.
T Consensus 186 ~~~~~~--~G~DQ~~~i~l~Rdia~r~~~~------~p~~~~~--~~l~gL~dg~~KMSKS~~~~~I~L~d~p~~i 251 (348)
T 2j5b_A 186 GIDICQ--LGIDQRKVNMLAIEYANDRGLK------IPISLSH--HMLMSLSGPKKKMSKSDPQGAIFMDDTEQEV 251 (348)
T ss_dssp CCSEEC--CBGGGHHHHHHHHHHHHHTTCC------CCEEEEB--CCCCCTTCSSCCCSTTCGGGSCBTTCCHHHH
T ss_pred CCcEEE--eccChHHHHHHHHHHHHHhCCC------CceeecC--ccccCCCCcccccccCCCCCeEeecCCHHHH
Confidence 777654 8999999999888889999984 1333443 456666 67 6999998 5889887544443
No 68
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=90.15 E-value=0.21 Score=52.83 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=42.2
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeeEEECCCCc--cceeccCC-ccchHHHHHHH
Q 008744 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK--RLRTRFSE-VVRLVDLLDEA 409 (555)
Q Consensus 344 V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~~~~~Hv~~g~v~~~~G~--kmSkR~G~-~v~l~dll~e~ 409 (555)
.+|.||..|+.....++..+|++ .+.+.|. .++.+-+|. |||||.+| .|.|.|=-++.
T Consensus 292 PvG~DQ~~hlel~Rdia~rfn~~------~p~~~~~--~~l~gLdG~~~KMSKS~~ns~I~l~D~p~~I 352 (451)
T 3foc_A 292 ASGIEQDPYFRLARDLAPRMGHP------KNAYLLG--KFLPGLQGSGTKMSASDPNSAIYLTDTPAQI 352 (451)
T ss_dssp EECTTTHHHHHHHHHHTTTTTSC------CCEEEEE--CCCCBTTBTTCCCCTTCGGGSCBTTCCHHHH
T ss_pred eeecchHHHHHHHHHHHHHhCCC------CCeeecC--CcccCCCCCCCccCCCCCCCeeeecCCHHHH
Confidence 46999999999888888899984 2345554 346667775 99999987 68775443443
No 69
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=89.43 E-value=0.16 Score=52.68 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=46.3
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCC--C-CCCCcEEEEEeeEEECCCC------------------cccee
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSAD--D-STYPKASHVGFGLVLGEDG------------------KRLRT 394 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~--~-~~~~~~~Hv~~g~v~~~~G------------------~kmSk 394 (555)
+++|.++ +|.||..|+..-..++..+|..+.. . ...+...| ..+|.+.+| +||||
T Consensus 179 ~~~~~vp--~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~--~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSK 254 (375)
T 2cyc_A 179 QGVTIAH--AGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVH--HHLLLGLQEPPKWPIESEEEFKEIKAQMKMSK 254 (375)
T ss_dssp TTCSEEE--EEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEE--ECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGG
T ss_pred hCCCeec--ccchHHHHHHHHHHHHHHhCCcccccccccCccEEec--cccccCCCCcccccccchhhhhhhhhhhcccC
Confidence 5778764 8999999999888888888761000 0 00123334 356777777 79999
Q ss_pred cc-CCccchHHHHHH
Q 008744 395 RF-SEVVRLVDLLDE 408 (555)
Q Consensus 395 R~-G~~v~l~dll~e 408 (555)
|. |+.|.|.|=-++
T Consensus 255 S~~~~~I~L~d~p~~ 269 (375)
T 2cyc_A 255 SKPYSAVFIHDSPEE 269 (375)
T ss_dssp SCGGGSCBTTCCHHH
T ss_pred CCCCCeeccCCCHHH
Confidence 98 788888654333
No 70
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=83.01 E-value=0.35 Score=49.29 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=29.1
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCC-CeEEEEeccCCc
Q 008744 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN-VEVLRRNHVGDW 177 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G-~~V~~~~yi~D~ 177 (555)
||+--|||+||+||+..++ -.+.+ |...| |+| ...|+||
T Consensus 5 y~G~~PTg~lHlGh~~g~l--~~~~~-lQ~~G~~~~--~~~IaD~ 44 (337)
T 2el7_A 5 LSGIQPSGEIHIGNYLGAI--KQWVA-IGEKLGRDA--FFCIVDY 44 (337)
T ss_dssp EEEECSCSCCBHHHHHTHH--HHHHH-HHHHHGGGE--EEEECGG
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHH-HHhcCCCCE--EEEEeCc
Confidence 7888999999999998775 22333 34568 887 6778886
No 71
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=82.31 E-value=0.27 Score=50.97 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=39.8
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCC-Cc-EEEEEeeEEECC-CC-ccceecc---CCccchHHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTY-PK-ASHVGFGLVLGE-DG-KRLRTRF---SEVVRLVDL 405 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~~~~~~~~-~~-~~Hv~~g~v~~~-~G-~kmSkR~---G~~v~l~dl 405 (555)
+++|.+. +|.||..|+..-..++..+|.... ..+. +. +.+-.-.+|-+- +| +|||||. |+.|.|.|=
T Consensus 170 ~~ad~vP--vG~DQ~~hleltRdia~rfn~~y~-~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~ 243 (388)
T 3prh_A 170 YGTDLVP--PGEDQKQHLELTRNLAERFNKKYN-DIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDE 243 (388)
T ss_dssp TTCCEEC--CCSSCHHHHHHHHHHHHHHHHHTC-SCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCC
T ss_pred hCCCEEE--echhHHHHHHHHHHHHHHhCcccC-CCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCC
Confidence 5778664 899999999988888887774210 0010 00 000000112222 44 6999999 899988643
No 72
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=81.01 E-value=0.73 Score=46.94 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=29.6
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
|++.-|||.||+||+..++. -.+-|...||+|.. .|+||
T Consensus 16 ~~G~~PTG~lHLGn~~g~l~---~~~~lQ~~G~~~~~--~IaD~ 54 (340)
T 2g36_A 16 LSGMRPTGKLHIGHLVGALE---NWVKLQEEGNECFY--FVADW 54 (340)
T ss_dssp EEEECCCSSCBHHHHHTHHH---HHHHHHHTTCEEEE--EECHH
T ss_pred EEeeCCCCcccHHhHHHHHH---HHHHHHHCCCCEEE--EEecc
Confidence 89999999999999887652 23335667998764 47885
No 73
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=80.00 E-value=1.3 Score=45.90 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=31.6
Q ss_pred ceEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHH-CCCeEEEEeccCCch
Q 008744 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDWG 178 (555)
Q Consensus 128 ~~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~-~G~~V~~~~yi~D~G 178 (555)
+++.| |++--|||+||+||+-.+ .+.|.|.. .|..|... |+|+.
T Consensus 81 ~~~~v-ysG~~PTG~lHLGh~v~~----~~~~~lQ~~~g~~v~i~--I~D~~ 125 (386)
T 3hzr_A 81 KPTFI-FIQKYPQKEVALEEYITL----EFARYLQDAFNIQVIIQ--ILDDI 125 (386)
T ss_dssp CCEEE-EEEECCCSSCBGGGHHHH----HHHHHHHHHHCCEEEEE--ECHHH
T ss_pred CCeEE-EeccCCCCCccHHHHHHH----HHHHHHHHhcCCeEEEE--eCchH
Confidence 44566 999999999999996544 23344555 48877766 88875
No 74
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=77.03 E-value=0.78 Score=46.50 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=28.3
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
||+--|||.||+||+..++ --+.++ .. ||++ .+.|+||
T Consensus 5 ysG~~PTG~lHlGn~vg~l--~~~~~l-Q~-g~~~--~~~IaD~ 42 (328)
T 1i6k_A 5 FSGIQPSGVITIGNYIGAL--RQFVEL-QH-EYNC--YFCIVDQ 42 (328)
T ss_dssp EEEECCCSCCBHHHHHHTH--HHHHHH-TT-TSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHHH-Hc-CCcE--EEEEeCc
Confidence 7888999999999998777 222233 33 9986 6778885
No 75
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=76.14 E-value=1.1 Score=45.72 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=38.8
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCC-CCCCCC-CCc-EEEEEeeEEECC-CC-ccceeccC---CccchHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDST-YPK-ASHVGFGLVLGE-DG-KRLRTRFS---EVVRLVD 404 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG~~-~~~~~~-~~~-~~Hv~~g~v~~~-~G-~kmSkR~G---~~v~l~d 404 (555)
+++|.+. +|.||..|+..-..++..+|.. .+ .+ .+. +.+-...+|-+- +| +|||||.+ +.|.|.|
T Consensus 151 ~~ad~vp--vG~DQ~~hleltRdia~rfn~~yg~--~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 223 (346)
T 3n9i_A 151 YQTNQVP--VGEDQKQHLELSRDIASRFNNLYGD--IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE 223 (346)
T ss_dssp TTCSEEC--CCGGGHHHHHHHHHHHHHHHHHHSS--CSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS
T ss_pred hCceEEE--eccchHHHHHHHHHHHHHhccccCC--cccccchhccCCcccCccCCCCccccCCCCCCCCceecCCC
Confidence 5778664 8999999999888888877620 00 01 011 111000123333 66 49999987 6887754
No 76
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=74.07 E-value=0.75 Score=46.84 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=39.1
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcC--CCCCCCCC-CCc-EEEEEeeEEECC-CC-ccceecc---CCccchHH
Q 008744 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAG--WLSADDST-YPK-ASHVGFGLVLGE-DG-KRLRTRF---SEVVRLVD 404 (555)
Q Consensus 336 ~~~d~iI~V~g~dq~~hf~~~~~~l~~lG--~~~~~~~~-~~~-~~Hv~~g~v~~~-~G-~kmSkR~---G~~v~l~d 404 (555)
+++|.+. +|.||..|+..-..++..+| |..+.+.+ .+. +.+-...+|-+- +| +|||||. |+.|.|.|
T Consensus 142 ~~ad~vp--vG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 217 (341)
T 3sz3_A 142 YGAHQVP--VGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE 217 (341)
T ss_dssp TTCSEEC--CCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC
T ss_pred cCCCEEE--eccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC
Confidence 5778664 89999999988778887765 21000001 011 111001233333 56 6999999 78998864
No 77
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=72.81 E-value=2.2 Score=44.58 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=28.2
Q ss_pred EEEEecCCCCCCC-CcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 130 AVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 130 v~Ve~~SpNp~kp-lHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
+.| ||+--|||+ ||+||+= ++ -.+ +-|...||++.. .|+||
T Consensus 31 ~~i-y~G~dPTg~sLHlGh~v-~l--~~l-~~lQ~~G~~~i~--lIgd~ 72 (419)
T 2ts1_A 31 VTL-YCGFDPTADSLHIGHLA-TI--LTM-RRFQQAGHRPIA--LVGGA 72 (419)
T ss_dssp CEE-EEEECCSSSSCBGGGHH-HH--HHH-HHHHHTTCEEEE--EECTT
T ss_pred CEE-EEeeCCCCCCccHHHHH-HH--HHH-HHHHHCCCcEEE--EEcCc
Confidence 345 999999999 9999965 22 223 445567998654 56665
No 78
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=70.66 E-value=1.2 Score=45.64 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=28.8
Q ss_pred eEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 129 ~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
+..| |++--|||+||+||+..++. -..+ |... |+| .+.|+||
T Consensus 22 ~~~v-ysG~~PTG~lHLGn~~g~l~--~~~~-lQ~~-~~~--~~~IaD~ 63 (351)
T 1yi8_B 22 RPRV-LTGDRPTGALHLGHLAGSLQ--NRVR-LQDE-AEL--FVLLADV 63 (351)
T ss_dssp CSEE-EEEECCSSCCBHHHHHHTHH--HHHH-HTSS-SEE--EEEECHH
T ss_pred CcEE-EEeeCCCCCccHHHHHHHHH--HHHH-HHHh-CCe--EEEEecc
Confidence 3445 89999999999999887652 2222 3333 666 6678886
No 79
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=70.04 E-value=2.3 Score=42.84 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=28.0
Q ss_pred ecCCCCCCC-CcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCch
Q 008744 134 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG 178 (555)
Q Consensus 134 ~~SpNp~kp-lHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G 178 (555)
|++--|||+ ||+||+= ++. . .+.|...||++ .+.|+||=
T Consensus 37 y~G~~PTg~slHlGh~l-~l~--~-~~~lQ~~g~~~--~~~i~D~~ 76 (322)
T 2yxn_A 37 VCGFDPTADSLHLGHLV-PLL--C-LKRFQQAGHKP--VALVGGAT 76 (322)
T ss_dssp EEEECCSSSSCBHHHHH-HHH--H-HHHHHHTTCEE--EEEECTTG
T ss_pred EEeecCCCCcccHHHHH-HHH--H-HHHHHHcCCcE--EEEEccce
Confidence 999999999 9999965 322 2 33455669876 56678863
No 80
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=69.64 E-value=2.3 Score=44.17 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=28.2
Q ss_pred EEEecCCCCCCC-CcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 131 VVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 131 ~Ve~~SpNp~kp-lHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
.| ||+--|||+ |||||+= ++. .+.++ ...||++ ...|+||
T Consensus 66 ~v-y~G~dPTg~sLHlGhlv-~l~--~l~~l-Q~~G~~~--~~lIgD~ 106 (392)
T 1y42_X 66 GA-YVGIDPTAPSLHVGHLL-PLM--PLFWM-YLEGYKA--FTLIGGS 106 (392)
T ss_dssp EE-EEEECCCSSSCBGGGHH-HHH--HHHHH-HHHTCEE--EEEECTT
T ss_pred EE-EEeecCCCCCccHHHHH-HHH--HHHHH-HHcCCcE--EEEEcCc
Confidence 44 999999999 9999976 332 34444 4459886 4567775
No 81
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=69.38 E-value=2.4 Score=44.41 Aligned_cols=41 Identities=17% Similarity=0.410 Sum_probs=28.1
Q ss_pred EEEEecCCCCCCC-CcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 130 AVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 130 v~Ve~~SpNp~kp-lHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
+.| ||+--|||+ ||+||+= ++. .+ +-|...||++.. .|+||
T Consensus 33 ~~i-y~G~dPTg~sLHlGh~v-~l~--~~-~~lQ~~G~~~~~--lIgd~ 74 (420)
T 1jil_A 33 VTL-YCGADPTADSLHIGHLL-PFL--TL-RRFQEHGHRPIV--LIGGG 74 (420)
T ss_dssp CEE-EEEECCSSSSCBHHHHH-HHH--HH-HHHHHTTCEEEE--EECTT
T ss_pred CEE-EEeeCCCCCCccHHHHH-HHH--HH-HHHHHCCCcEEE--EEcCc
Confidence 345 999999999 9999965 322 23 344557998754 45554
No 82
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=68.13 E-value=3 Score=42.98 Aligned_cols=41 Identities=12% Similarity=0.382 Sum_probs=27.7
Q ss_pred EEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 131 VVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 131 ~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
.| |++--|||.||+|| .++-....+-|..+||+|. +.|+||
T Consensus 58 ~i-y~G~~PTg~lHlG~---gvl~~~~~~~lQ~~G~~~~--~lIaD~ 98 (373)
T 3vgj_A 58 IC-YDGFEPSGRMHIAQ---GLLKSIIVNKLTSNGCTFI--FWIADW 98 (373)
T ss_dssp EE-EEEECCCSSCBHHH---HHHHHHHHHHHHTTTCEEE--EEECHH
T ss_pred eE-EeCCCCCCCceehh---hHHHHHHHHHHHHCCCcEE--EEEecc
Confidence 35 89999999999999 3333322334456788755 467776
No 83
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=67.70 E-value=3 Score=42.65 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=28.9
Q ss_pred eEEEEecCCCCCCC-CcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 129 KAVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 129 ~v~Ve~~SpNp~kp-lHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
+..| ||+--|||+ ||+||+- ++. .+.+ |...||++ .+.|+||
T Consensus 46 ~~~v-y~G~~PTg~sLHLGhl~-~l~--~~~~-lQ~~G~~~--~~lIaD~ 88 (356)
T 2pid_A 46 PQTI-YCGFDPTADSLHVGHLL-ALL--GLFH-LQRAGHNV--IALVGGA 88 (356)
T ss_dssp CCEE-EEEECCSSSSCBHHHHH-HHH--HHHH-HHHTTCEE--EEEECTT
T ss_pred CCEE-EEeecCCCCcccHHHHH-HHH--HHHH-HHHCCCcE--EEEEccc
Confidence 3556 999999998 9999943 333 2444 44569876 4567775
No 84
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=66.94 E-value=1.3 Score=44.64 Aligned_cols=38 Identities=11% Similarity=0.284 Sum_probs=28.2
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
||+--|||.||+||+-+++.- +.++-+ ||++ .+.|+||
T Consensus 7 ysG~~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~--~~~iaD~ 44 (322)
T 3tzl_A 7 LTGLQPSGDLHIGNYFGAIKQ--MVDAQE--KSQM--FMFIANY 44 (322)
T ss_dssp EEEECCSSCCBHHHHHHTHHH--HHHTTT--TSCC--EEEECHH
T ss_pred EEccCCCccccHHHHHHHHHH--HHHHhc--CCCE--EEEEecC
Confidence 788899999999998766643 444443 8887 5567776
No 85
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=65.33 E-value=2.7 Score=43.49 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=29.8
Q ss_pred eEEEEecCCCCCCCCcccchhhhhHHHHHHHHHHH-CCCeEEEEeccCCc
Q 008744 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (555)
Q Consensus 129 ~v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~-~G~~V~~~~yi~D~ 177 (555)
++.| |++--|||.||+||.-.++ +.+.|.. .|++|.. -|+||
T Consensus 73 p~~i-~sG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~i--~IaD~ 115 (392)
T 3jxe_A 73 GFFL-YTGRGPSGPMHIGHIIPFF----ATKWLQEKFGVNLYI--QITDD 115 (392)
T ss_dssp CCEE-EEEECCSSCCBHHHHHHHH----HHHHHHHHHCCEEEE--EECHH
T ss_pred CeEE-EeccCCCCchhHHHHHHHH----HHHHHHHhcCCceEE--Eecch
Confidence 3455 8999999999999976554 3444554 7887664 47775
No 86
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=61.86 E-value=2.1 Score=43.66 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=28.0
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
||+--|||.||+||...++. -..+ |.. ||++ .+.|+||
T Consensus 8 ~sG~~PTG~lHLGn~vg~l~--~~~~-lQ~-~~~~--~~~IaD~ 45 (348)
T 2yy5_A 8 LTGIQASGKQHLGNYLGVMQ--SLIE-LQE-QCQL--FVFVADL 45 (348)
T ss_dssp EEEECCCTTCBHHHHHHTGG--GHHH-HHH-HSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHHH--HHHH-HHh-CCcE--EEEEcCh
Confidence 89999999999999987772 2222 444 7875 5778885
No 87
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=61.80 E-value=5.4 Score=41.32 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=29.5
Q ss_pred ceEEEEecCCCCCC-CCcccchhhhhHHHHHHHHHHHC-CCeEEEEeccCCc
Q 008744 128 KKAVVDFSSPNIAK-EMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDW 177 (555)
Q Consensus 128 ~~v~Ve~~SpNp~k-plHvGHlR~~iiGd~laril~~~-G~~V~~~~yi~D~ 177 (555)
+++.| |++--||| .||+||+ +|=.+.|.|... |..|.-. |+|+
T Consensus 77 ~~~~v-y~G~~PTg~~lHLGh~----v~~~~~~~lQ~~~~~~v~i~--I~D~ 121 (395)
T 3i05_A 77 QPFYL-YTGRGPSSESMHMGHL----IPFMFTKWLQDSFRVPLVIQ--MTDD 121 (395)
T ss_dssp CCEEE-EEEECCCSSCCBGGGS----HHHHHHHHHHHHHTCCEEEE--ECHH
T ss_pred CCeEE-EEeecCCCccchHHHH----HHHHHHHHHHHhcCCcEEEE--Ecch
Confidence 44566 99999999 6999997 343233445554 7766664 7775
No 88
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=61.66 E-value=5.4 Score=41.87 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=29.0
Q ss_pred EEEEecCCCCCCC-CcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCchhHH
Q 008744 130 AVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQF 181 (555)
Q Consensus 130 v~Ve~~SpNp~kp-lHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~G~Q~ 181 (555)
+.| |++--|||+ ||+||+= ++ -.+.+ |..+||+| ...|+||=..+
T Consensus 38 ~~v-y~G~dPTg~sLHlGh~v-~l--~~l~~-lQ~~G~~~--i~lIgD~ta~i 83 (432)
T 1h3f_A 38 LTV-KLGADPTRPDLHLGHAV-VL--RKMRQ-FQELGHKV--VLIIGDFTGMI 83 (432)
T ss_dssp CEE-EEEECTTCCSCBHHHHH-HH--HHHHH-HHHTTCEE--EEEECCCC---
T ss_pred cEE-EEcccCCCCCCchhhHH-HH--HHHHH-HHHCCCCE--EEEEccceEEe
Confidence 345 999999997 9999965 22 23333 34569875 56788874433
No 89
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=59.50 E-value=6 Score=41.47 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=28.0
Q ss_pred EEEEecCCCCCCC-CcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 130 AVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 130 v~Ve~~SpNp~kp-lHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
..| ||+--|||+ ||+||+- ++. .+. -|...||++. +.|+||
T Consensus 33 ~~i-y~G~dPTg~sLHLGhlv-~l~--~l~-~lQ~~G~~~i--~lIgD~ 74 (432)
T 2jan_A 33 MTV-YAGFDPTAPSLHAGHLV-PLL--TLR-RFQRAGHRPI--VLAGGA 74 (432)
T ss_dssp CEE-EEEECCSSSSCBGGGHH-HHH--HHH-HHHHTTCEEE--EEECHH
T ss_pred CEE-EEeeCCCCCCcCHHHHH-HHH--HHH-HHHHCCCcEE--EEEcCc
Confidence 345 999999997 9999944 332 244 4445699864 456775
No 90
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=58.47 E-value=6.5 Score=40.00 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=27.7
Q ss_pred EEEEecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 130 AVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 130 v~Ve~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
..| |++--|||.||+||.=.++ ..+.++ ...||++ ...|+||
T Consensus 41 ~~v-y~G~~PTg~lHlGhyl~~l--~~~~~l-Q~~G~~~--~~~i~D~ 82 (348)
T 2j5b_A 41 FTA-YNGFEPSGRIHIAQALITV--MNTNNM-IECGGQM--IIYIADW 82 (348)
T ss_dssp EEE-EEEECCCSSCBHHHHHHHH--HHHHHH-HHTTEEE--EEEECHH
T ss_pred CEE-EeccCCCCCCchhHHHHHH--HHHHHH-HHcCCcE--EEEeccc
Confidence 344 9999999999999922222 233344 4468765 5677886
No 91
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=54.80 E-value=3.3 Score=42.09 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=27.2
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
|++--|||+||+||.=+++ .-+..+-+ ||++ .+.|.||
T Consensus 10 ~sG~~PTG~lHLGhy~g~l--~~~~~lQ~--~~~~--~~~iaD~ 47 (341)
T 3sz3_A 10 LSGVQPSGELSIGNYLGAL--RQWQQMQD--DYDC--QYCVVDL 47 (341)
T ss_dssp EEEECSSSCCBHHHHHHTG--GGHHHHHH--HSEE--EEEECHH
T ss_pred EeCcCCCCcccHHHHHHHH--HHHHHHHh--cCeE--EEEEecc
Confidence 8899999999999987665 23334444 5764 4678886
No 92
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=53.49 E-value=9.4 Score=39.63 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=29.6
Q ss_pred ceEEEEecCCCCCC-CCcccchhhhhHHHHHHHHHHHC-CCeEEEEeccCCc
Q 008744 128 KKAVVDFSSPNIAK-EMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDW 177 (555)
Q Consensus 128 ~~v~Ve~~SpNp~k-plHvGHlR~~iiGd~laril~~~-G~~V~~~~yi~D~ 177 (555)
+++.| |++--||| .||+||+= |=.+.+.|..+ |..|.. -|+|+
T Consensus 100 ~p~~v-y~G~~PTg~~lHLGh~v----~~~~~~~lQ~~~g~~~~i--~IaD~ 144 (406)
T 3tze_A 100 RPFYL-YTGRGPSSKTMHIGHTI----PFLLCKYMQDAFKIRLVI--QITDD 144 (406)
T ss_dssp CCEEE-EEEECCCSSCCBGGGHH----HHHHHHHHHHHHTCCEEE--EECHH
T ss_pred CCeEE-EEeeCCCCCcccHHHHH----HHHHHHHHHHhcCCcEEE--EeeCh
Confidence 44566 99999999 79999954 43344445555 877665 46775
No 93
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=53.40 E-value=7.2 Score=40.33 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=29.5
Q ss_pred eEEEEecCCCCC-CCCcccchhhhhHHHHHHHHHHHC-CCeEEEEeccCCchh
Q 008744 129 KAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDWGT 179 (555)
Q Consensus 129 ~v~Ve~~SpNp~-kplHvGHlR~~iiGd~laril~~~-G~~V~~~~yi~D~G~ 179 (555)
++.| |++--|| |.||+||+=.++ .+.+ |..+ |..|.. -|+|++.
T Consensus 74 ~~~v-y~G~~PTa~~lHlGh~v~~~---~~~~-lQ~~~~~~v~i--~I~D~~~ 119 (393)
T 3hv0_A 74 LFYL-YTGRGPSSESLHVGHLVPFL---FTKY-LQDTFKVPLVI--QLTDDEK 119 (393)
T ss_dssp CCEE-EEEECCSSSSCBSTTHHHHH---HHHH-HHHHHCCCEEE--EECHHHH
T ss_pred CeEE-EeCCCCCCCCccHHHHHHHH---HHHH-HHHhcCCCeEe--eccChHH
Confidence 3455 8999999 689999954433 2444 5555 666554 6899853
No 94
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=52.34 E-value=9.5 Score=40.12 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=29.8
Q ss_pred ceEEEEecCCCCC-CCCcccchhhhhHHHHHHHHHHHC-CCeEEEEeccCCch
Q 008744 128 KKAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDWG 178 (555)
Q Consensus 128 ~~v~Ve~~SpNp~-kplHvGHlR~~iiGd~laril~~~-G~~V~~~~yi~D~G 178 (555)
+++.| |++--|| |.||+||+=.+ ...|.|..+ |..|.. -|+|+.
T Consensus 90 ~p~~v-ytG~dPTagsLHLGH~v~~----~~l~~lQ~~~g~~v~I--~IgD~~ 135 (451)
T 3foc_A 90 HPIYI-YTGRGPSSGALHLGHLLPF----IFTKYLQDAFKCYVVI--QITDDE 135 (451)
T ss_dssp CCEEE-EEEECCCSSCCBHHHHHHH----HHHHHHHHHHTCEEEE--EECHHH
T ss_pred CCeEE-EecCCCCCCCccHHHHHHH----HHHHHHHHccCceEEE--EeeCcH
Confidence 34566 9999999 88999995433 323345555 666655 488874
No 95
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=50.88 E-value=11 Score=40.05 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=31.0
Q ss_pred CceEEEEecCCCCC-CCCcccchhhhhHHHHHHHHHHH-CCCeEEEEeccCCc
Q 008744 127 VKKAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (555)
Q Consensus 127 ~~~v~Ve~~SpNp~-kplHvGHlR~~iiGd~laril~~-~G~~V~~~~yi~D~ 177 (555)
++++.| |++--|| |.|||||+=.++ +.+.|.. +|+.|.. -|+||
T Consensus 153 ~~~~~v-y~G~dPTag~LHLGh~v~~~----~~~~lQ~~~g~~~ii--lI~D~ 198 (477)
T 1r6t_A 153 KKPFYL-YTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLVI--QMTDD 198 (477)
T ss_dssp TCCEEE-EEEECCCTTCCBGGGHHHHH----HHHHHHHHHTCCEEE--EECHH
T ss_pred CCCcEE-EEcccCCCCCccHHHHHHHH----HHHHHHHHhCCcEEE--EEecc
Confidence 345666 9999999 899999976554 2344554 7887654 56664
No 96
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=46.15 E-value=12 Score=39.08 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=28.6
Q ss_pred EEEEecCCCCC-CCCcccchhhhhHHHHHHHHHHH-CCCeEEEEeccCCc
Q 008744 130 AVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (555)
Q Consensus 130 v~Ve~~SpNp~-kplHvGHlR~~iiGd~laril~~-~G~~V~~~~yi~D~ 177 (555)
+.| |++--|| |.||+||+=..+. .|.|.. .|+.|. ..|+||
T Consensus 103 ~~v-y~G~dPTag~LHLGh~v~~~~----l~~lQ~~~g~~~i--~lI~D~ 145 (432)
T 2ip1_A 103 FFL-YTGRGPSSDSMHLGHMIPFVF----TKWLQEVFDVPLV--IELTDD 145 (432)
T ss_dssp CEE-EEEECCCSSCCBGGGHHHHHH----HHHHHHHHTCCEE--EEECHH
T ss_pred eEE-EEeecCCCCCccHHHHHHHHH----HHHHHHHcCCeEE--EEEecc
Confidence 455 9999999 8999999764432 334554 788754 456774
No 97
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=45.67 E-value=5.9 Score=40.91 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=26.3
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
|++--|||+||+||.=+++- . . +-|.. ||+| .+.|.||
T Consensus 39 ~sG~~PTG~lHLGhyvGal~-~-~-~~LQ~-~~~~--~~~IaD~ 76 (388)
T 3prh_A 39 FSGIQPSGSVTLGNYIGAMK-Q-F-VELQH-DYNS--YFCIVDQ 76 (388)
T ss_dssp EEEECCCSCCBHHHHHHTHH-H-H-HHTTT-TSEE--EEEECHH
T ss_pred EEeeCCCCcchHHHHHHHHH-H-H-HHHHc-cCcE--EEEEecc
Confidence 89999999999999755542 1 1 12232 8876 4577886
No 98
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=41.71 E-value=16 Score=38.25 Aligned_cols=43 Identities=28% Similarity=0.379 Sum_probs=30.5
Q ss_pred ceEEEEecCCCCC-CCCcccchhhhhHHHHHHHHHHH-CCCeEEEEeccCCc
Q 008744 128 KKAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (555)
Q Consensus 128 ~~v~Ve~~SpNp~-kplHvGHlR~~iiGd~laril~~-~G~~V~~~~yi~D~ 177 (555)
+++.| |++--|| |.|||||+=..+ ..|.|.. .|+.|. .-|+||
T Consensus 107 ~~~~v-y~G~dPTag~LHLGh~v~~~----~~~~lQ~~~G~~~i--ilIgD~ 151 (437)
T 1r6u_A 107 KPFYL-YTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLV--IQMTDD 151 (437)
T ss_dssp CCEEE-EEEECCCSSCCBHHHHHHHH----HHHHHHHHHTCCEE--EEECHH
T ss_pred CCcEE-EEcccCCCCCccHHHHHHHH----HHHHHHHHhCCcEE--EEEecc
Confidence 44666 9999999 899999976444 2344554 798764 456775
No 99
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=38.22 E-value=7.8 Score=39.35 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=25.5
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHH--HHHCCCeEEEEeccCCc
Q 008744 134 FSSPNIAKEMHVGHLRSTIIGDSLARM--LEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~lari--l~~~G~~V~~~~yi~D~ 177 (555)
|++--|||+||+||.=+++ .++ |.. +|++ .+.|.||
T Consensus 19 ~sG~~PTG~lHLGh~vg~l-----~~~~~lQ~-~~~~--~~~iaD~ 56 (346)
T 3n9i_A 19 FSGAQPSGELTIGNYMGAL-----RQWVQMQD-DYDC--IYCIVDL 56 (346)
T ss_dssp EEEECSCSCCBHHHHHHTH-----HHHHTTTT-TSEE--EEEECHH
T ss_pred EECcCCCCcccHHHHHHHH-----HHHHHHHh-hCcE--EEEEecc
Confidence 8899999999999975553 333 332 5664 5678886
No 100
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=33.99 E-value=18 Score=37.06 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=26.1
Q ss_pred ecCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEEeccCCc
Q 008744 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (555)
Q Consensus 134 ~~SpNp~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi~D~ 177 (555)
|++--|||.||+||.-.++. .+.+ |...||++ ...|+||
T Consensus 37 y~G~~PTg~lHlG~yl~~l~--~~~~-lQ~~G~~~--~~~iaD~ 75 (375)
T 2cyc_A 37 YIGFEISGYIHLGTGLMAGA--KIAD-FQKAGIKT--RVFLADW 75 (375)
T ss_dssp EEEECCCSCCBHHHHHHHHH--HHHH-HHHTTCBC--EEEECHH
T ss_pred EeCCCCCCCcCchHHHHHHH--HHHH-HHHCCCcE--EEEecCc
Confidence 88999999999999333332 2333 34468876 4567775
No 101
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=31.58 E-value=25 Score=27.83 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=42.4
Q ss_pred HhHHHHHHHHHHHHHHhc-CCCCCCCccccc--c--cCC--CCcccccchHHHHHHHhhcCCCCCCCchHHHHHHHhh
Q 008744 9 GNVKRELEKVFDLALKAT-VPNETDVRPLIA--A--CTA--KFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKN 79 (555)
Q Consensus 9 ~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~--~--~~~--~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~ 79 (555)
|.++++|.+.|..+++.. +|-. ....++. | ++. +.||.+.. |+.+.|.++.+.--.+++.++|..|+++
T Consensus 6 m~~~~ei~~qi~~a~~~a~FPI~-s~~EL~~AlP~G~~t~c~~Gd~~~t-a~El~kll~~~DFP~ksA~~lAd~iv~r 81 (84)
T 1iio_A 6 MGVKEDIRGQIIGALAGADFPIN-SPEELMAALPNGPDTTCKSGDVELK-ASDAGQVLTADDFPFKSAEEVADTIVNK 81 (84)
T ss_dssp CSHHHHHHHHHHHHHTTSSSTTB-HHHHHHHHCTTSSCCCCCBTTBCCC-TTTTGGGSCGGGSBCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHcCCCCCCC-CHHHHHHhCCCCCCCceeeCCEeee-HHHHHhhCCcccCCCCCHHHHHHHHHHH
Confidence 378889999998888754 2210 0111221 1 122 46999876 7888877653322337888888888764
No 102
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=28.69 E-value=37 Score=33.17 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=32.7
Q ss_pred CCCcccchh---hhhHHHHHHHHHHHC-CCeEEEEeccCCchhHH
Q 008744 141 KEMHVGHLR---STIIGDSLARMLEFS-NVEVLRRNHVGDWGTQF 181 (555)
Q Consensus 141 kplHvGHlR---~~iiGd~laril~~~-G~~V~~~~yi~D~G~Q~ 181 (555)
++..||..- +.+++..++.+|+.. ||+|....-+++....+
T Consensus 12 ~~I~ig~~~~te~~il~~i~~~~Le~~~G~~V~~~~~lg~~~~~~ 56 (284)
T 3r6u_A 12 QTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTIKNLGSNAVQQ 56 (284)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHSSCCEEEEEEECSHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCeEEEecCCchHHHH
Confidence 556666644 789999999999998 99999998887754433
No 103
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=27.64 E-value=45 Score=19.92 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhcccc
Q 008744 533 VVCEYLYNLSEYFTRFYS 550 (555)
Q Consensus 533 ~l~~yl~~La~~fn~fY~ 550 (555)
.+++-|..+.+.||.||-
T Consensus 7 ~iAqELRRIGDeFN~~y~ 24 (26)
T 2wh6_B 7 WIAQELRRIGDEFNAYYA 24 (26)
T ss_dssp HHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHhHHHhhhcc
Confidence 467788899999999984
No 104
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=21.48 E-value=1.4e+02 Score=26.43 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=27.8
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHCCCeEEEEecc
Q 008744 140 AKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHV 174 (555)
Q Consensus 140 ~kplHvGHlR~~iiGd~laril~~~G~~V~~~~yi 174 (555)
+.-++||++-..+--+.|..++...|..|.....+
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~ 154 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 154 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE
Confidence 45588999988888899999999999766665543
Done!