RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 008744
(555 letters)
>gnl|CDD|215160 PLN02286, PLN02286, arginine-tRNA ligase.
Length = 576
Score = 1087 bits (2813), Expect = 0.0
Identities = 435/543 (80%), Positives = 480/543 (88%), Gaps = 3/543 (0%)
Query: 13 RELEKVFDLALKATVPNETDVRPLIAACT-AKFGDYQCNNAMGLWSKIKGKGTEFKGPQP 71
REL K+F+ +L+ TVP+E V PL+AACT KFGDYQCNNAMGLWSK+KGKGT FK P+
Sbjct: 1 RELAKLFEASLRLTVPDEPSVEPLVAACTNPKFGDYQCNNAMGLWSKLKGKGTSFKNPRA 60
Query: 72 VGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAV 131
V QAI+KNLP SEMIES SVAGPGFVNV LS +W+AK I++MLVDGI+TWAP L VK+AV
Sbjct: 61 VAQAIVKNLPASEMIESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTWAPTLPVKRAV 120
Query: 132 VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEK 191
VDFSSPNIAKEMHVGHLRSTIIGD+LARMLEFS VEVLRRNHVGDWGTQFGMLIE+LFEK
Sbjct: 121 VDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEK 180
Query: 192 FPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEI 251
FPN E ++ AIG+LQEFY+ +K RFD D FK RAQQAVVRLQ G+P+Y AWA+ICEI
Sbjct: 181 FPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEI 240
Query: 252 SRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLI 311
SR+EF+KVY+RLRV+LEEKGESFYNPYIPGVI+EL +GLV ES GARVIF+EG +IPLI
Sbjct: 241 SRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLI 300
Query: 312 IVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDS 371
+VKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQ HFDMVF AAKRAGWL +
Sbjct: 301 VVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWL--PED 358
Query: 372 TYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEEL 431
TYP+ HVGFGLVLGEDGKR RTR EVVRLVDLLDEAK+RSKA LIERGKD EWT EEL
Sbjct: 359 TYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEEL 418
Query: 432 EQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKD 491
EQ AEAVGYGA KY DLKNNRLTNYTFSFDQML+ KGNTAVYLLYAHARICSIIRKSGKD
Sbjct: 419 EQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKD 478
Query: 492 IEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSN 551
I+ELKKTG +VLDH DERALGLHLL F EV+EEA T+LLPN +CEYLYNLSE FT+FYSN
Sbjct: 479 IDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSN 538
Query: 552 CQV 554
C+V
Sbjct: 539 CKV 541
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 454 bits (1170), Expect = e-154
Identities = 191/557 (34%), Positives = 298/557 (53%), Gaps = 31/557 (5%)
Query: 10 NVKRELEKVFDLALKATVPNETDVRPLIAACT-AKFGDYQCNNAMGLWSKIKGKGTEFKG 68
N+K+ L++ AL A + ++ L+ + GD+ N A L +K GK
Sbjct: 2 NIKQLLKEKIAEALSAAGLDVEEIEILVEPPKDPEHGDFATNIAFQL-AKKLGKN----- 55
Query: 69 PQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETW--APKLR 126
P+ + + I + L E+IE +AGPGF+N LS ++A+ + ++L G + + + +
Sbjct: 56 PREIAEEIAEKLDTDEIIEKVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGK 115
Query: 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIE 186
KK V+++SS N +H+GHLR+ IIGDSLAR+LEF +V R N+V DWGTQ GML
Sbjct: 116 GKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLAL 175
Query: 187 YLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAF-KERAQQAVVRLQSGEPKYHEAW 245
++ + G L E+Y + + DP +E A++ V +L+SG+ + E W
Sbjct: 176 SYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEA-ELW 234
Query: 246 AQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPGVIDELSKQGLVEESQGARVIF 302
+ ++S + + RL V + GESFYN + V+++L ++GL+ E GA V+
Sbjct: 235 RKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVD 294
Query: 303 IE-----GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVF 357
+ G + ++ KSDG + Y + D+A Y+ E + +IYV Q HF +
Sbjct: 295 LLKFKKFGDDKDRVLQKSDGTYLYFTRDIAYHLYKF-ERGFDKLIYVLGADQHGHFKQLK 353
Query: 358 SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVL 417
+ + G+ + H G GLV G +G ++ TR VV L DLLDEA R+ +
Sbjct: 354 AVLELLGYGPDKEVLL----HQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEM 409
Query: 418 IERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYA 477
E+ + E + AE VG A +Y DL +R +Y F +D+ L+ +GNTA Y+ YA
Sbjct: 410 EEKEEKNE-------EIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYA 462
Query: 478 HARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEY 537
HARICSI+RK+G+D +L +L +ER L LL F EV+EEA L P+ + Y
Sbjct: 463 HARICSILRKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANY 522
Query: 538 LYNLSEYFTRFYSNCQV 554
LY+L+ F FY+ C V
Sbjct: 523 LYDLAGSFNSFYNACPV 539
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 431 bits (1110), Expect = e-146
Identities = 166/551 (30%), Positives = 249/551 (45%), Gaps = 94/551 (17%)
Query: 10 NVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGP 69
++K L + AL+A E + + GDY N AM L +K K P
Sbjct: 4 DIKELLAEALAAALEAGGLPELPAVLIERPKDPEHGDYATNVAMQL-AKKLKKN-----P 57
Query: 70 QPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETW--APKLRV 127
+ + + I++ IE +AGPGF+N L +A+ + +L G E + + +
Sbjct: 58 REIAEEIVEA------IEKVEIAGPGFINFFLDPAALAELVLAILEAG-ERYGRSDIGKG 110
Query: 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEY 187
KK VV++ S N +HVGHLRS +IGD+LAR+LEF+ +V R +V D GTQ GMLI
Sbjct: 111 KKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIAS 170
Query: 188 LFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQ 247
L W +
Sbjct: 171 LE-----------------------------------------------------LLWRK 177
Query: 248 ICEISRKEFDKVYKRLRVDLEE---KGESFYNPYIPGVIDELSKQGL-VEESQGARVIFI 303
+IS E + RL V + + E +YN + V+++L ++GL ES GA + +
Sbjct: 178 AVDISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRL 237
Query: 304 E--GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAK 361
G + +++KSDG + Y + D+A Y+ E+ + +IYV HF + +A K
Sbjct: 238 TEFGDDKDRVLIKSDGTYTYFTRDIAYHLYKF--ERFDRVIYVVGADHHGHFKRLKAALK 295
Query: 362 RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERG 421
G+ H GLV G +G ++ TR VV L DLLDEA R++ ++ E+
Sbjct: 296 ALGYDPDALE---VLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEK- 351
Query: 422 KDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARI 481
+ AEAVG A +YFDL +R + F D L+ +GN Y+ YAHARI
Sbjct: 352 -----------EIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHARI 400
Query: 482 CSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNL 541
CSI+RK+ E +L +E+ L L F EV+E A L P+ + YLY L
Sbjct: 401 CSILRKAA---EAGIDLLLALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYEL 457
Query: 542 SEYFTRFYSNC 552
+ F FY+
Sbjct: 458 AGAFHSFYNRV 468
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori [Protein synthesis, tRNA
aminoacylation].
Length = 566
Score = 388 bits (999), Expect = e-129
Identities = 181/521 (34%), Positives = 273/521 (52%), Gaps = 34/521 (6%)
Query: 43 KFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLS 102
+FGDY N A L +K K P+ + + I+ L E+IE AGP F+N LS
Sbjct: 33 EFGDYASNIAFPLAKVLK------KNPRAIAEEIVLKLKTGEIIEKVEAAGP-FINFFLS 85
Query: 103 KNWMAKNIQKMLVDGIETWAP-KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARML 161
+ + + + ++ E + KL+ KK +++FSS N A +H+GHLR+ IIGDSLAR+L
Sbjct: 86 PQKLLERLIQKILTQKEDYGSKKLKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARIL 145
Query: 162 EFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETA--IGELQEFYRRSKNRFDS 219
EF +V+R +V DWG QFG+L EKF N + L+ FY R +
Sbjct: 146 EFLGYDVIREYYVNDWGRQFGLLALG-VEKFGNEKLNEAVKKPDHGLEGFYVEINKRLEE 204
Query: 220 DPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYN 276
+ +E A++ V+L+SG+ + + W ++ E S + + RL + + GES N
Sbjct: 205 NEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKN 264
Query: 277 PYIPGVIDELSKQGLVEESQGARVIFIEGVNI---PLIIVKSDGGFNYASTDLAALWYRL 333
+P V+++L ++GLV E GA + + ++ KSDG + Y + D+A +L
Sbjct: 265 GMVPKVLEDLKEKGLVVED-GALWLDLTLFGDKDKDRVLQKSDGTYLYLTRDIAYHLDKL 323
Query: 334 NEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLR 393
E + +IYV LH F+ ++ G+ + H+ FG+V K R
Sbjct: 324 -ERGFDKMIYVWGSDHHLHIAQFFAILEKLGFYKK-----KELIHLNFGMVPLGSMKTRR 377
Query: 394 TRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRL 453
+ L +LLDEA R+ V+ + + E E A+AVG GA +YFDL NR
Sbjct: 378 GNV---ISLDNLLDEASKRAGNVITIK------NDLEEEDVADAVGIGAVRYFDLSQNRE 428
Query: 454 TNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGL 513
T+Y F +D ML+ +GNTA Y+ YAHARICSI+RK+ D E+L +L E+ L
Sbjct: 429 THYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADDFSLL-EEKEKELLK 487
Query: 514 HLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQV 554
LL F +V+EEA L P+V+ YLY L+ F+ FY C V
Sbjct: 488 LLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKACPV 528
>gnl|CDD|216097 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only arginyl tRNA
synthetase.
Length = 345
Score = 322 bits (826), Expect = e-106
Identities = 143/336 (42%), Positives = 197/336 (58%), Gaps = 12/336 (3%)
Query: 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEY 187
KK VV+FSSPN AK +HVGHLRSTIIGD+L+R+LEF +V+R N+VGDWGTQFGMLI
Sbjct: 19 KKVVVEFSSPNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVVRENYVGDWGTQFGMLIAS 78
Query: 188 LFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQ 247
L E I +L++ YR K + ++ F + A+ AVV LQSG+ ++ E W
Sbjct: 79 LEAAAKE-ELTVPMPIQDLEDGYRGIKKDYIAEEIFAKEARNAVVLLQSGDEEFREMWVL 137
Query: 248 -ICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIE-- 304
I + ++ +K+Y V L E GES Y + + +L GLV E+ GA +F+
Sbjct: 138 LIFDHIKQSLNKIYDDFDVTLHE-GESVYKGRMNDAVKDLKDNGLVYENDGALWLFLTEF 196
Query: 305 GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAG 364
G + +++KSDGG Y +TDLA RL + + IIYV Q H +F+AA G
Sbjct: 197 GDDKDRVVIKSDGGALYITTDLAYAKERLEQRGFDLIIYVLGADQHGHIQRLFAAAAALG 256
Query: 365 WLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDK 424
D + H+GFG+VLG+DGKR+ TR VV L DLLDEA R+ + + +
Sbjct: 257 ----YDPESVEVLHIGFGVVLGKDGKRMSTRAGNVVTLDDLLDEALERAMDIKEKN---R 309
Query: 425 EWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSF 460
+ T +ELE A A+G AA+Y DL +NR T+Y F
Sbjct: 310 DLTADELEAVATAIGVDAARYADLSSNRDTDYIFDL 345
>gnl|CDD|183534 PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed.
Length = 562
Score = 307 bits (789), Expect = 6e-98
Identities = 162/469 (34%), Positives = 253/469 (53%), Gaps = 20/469 (4%)
Query: 90 SVAGPGFVNVVLSKNWMAKNI-QKMLVDGIETWAPKL-RVKKAVVDFSSPNIAKEMHVGH 147
GP +VNV ++ ++ + + +L + E K V+D+SSPNIAK +GH
Sbjct: 74 EAVGP-YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGH 132
Query: 148 LRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207
LRST+IG++L + E EV+ N++GDWGTQFG LI ++K+ N E I EL
Sbjct: 133 LRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLIT-AYKKWGNEAVVKEDPIRELF 191
Query: 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL 267
+ Y + D +E + +L+ G+ + E W S KEF ++Y+ L V+
Sbjct: 192 KLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEF 251
Query: 268 EE-KGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNI-PLIIVKSDGGFNYASTD 325
+GE+FYN + I L + L+EES+GA V+ +E + P +I KSDG YA+ D
Sbjct: 252 TNFQGEAFYNDLMEDFIGILEEHDLLEESEGALVVNLEEEGMPPCLIRKSDGATIYATRD 311
Query: 326 LAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVL 385
L A YR N + +YV Q LHF+ F+ K+ G+ D HV FGL+L
Sbjct: 312 LTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYTWVD-----GMEHVPFGLIL 366
Query: 386 GEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKY 445
+DGK++ TR VV L ++L+EA +K + ++K ++ E+ A+ VG GA +
Sbjct: 367 -KDGKKMSTRKGRVVLLEEVLEEAIELAKQNI----EEKNPNLKQKEEVAKQVGVGAVIF 421
Query: 446 FDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDH 505
DLKN R+ N FS + ML +G T Y+ Y HAR CSI+RK + E T +L D+
Sbjct: 422 HDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESVEFETC--TFALKDDY 479
Query: 506 ADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQV 554
+ ++ L F +VIE A P+V+ +Y+ ++++ F ++Y N ++
Sbjct: 480 S--WSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVRI 526
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. There
are at least three subgroups of ArgRS. One type contains
both characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. The second subtype lacks
the KMSKS motif; however, it has a lysine N-terminal to
the HIGH motif, which serves as the functional
counterpart to the second lysine of the KMSKS motif. A
third group, which is found primarily in archaea and a
few bacteria, lacks both the KMSKS motif and the HIGH
loop lysine.
Length = 212
Score = 218 bits (557), Expect = 5e-68
Identities = 77/269 (28%), Positives = 113/269 (42%), Gaps = 61/269 (22%)
Query: 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYL 188
K +V+F S N +HVGHLR+ IIGDSLAR+LEF +V R ++ DWG Q G+LI L
Sbjct: 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL 60
Query: 189 FEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQI 248
+ E +I E Y R RFD
Sbjct: 61 EK----WRKLVEESIKADLETYGRLDVRFD------------------------------ 86
Query: 249 CEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GV 306
GES Y + V++ L + GL+ E GA + + G
Sbjct: 87 -------------------VWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFGD 127
Query: 307 NIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL 366
+ ++V+SDG + Y + D+A + E A+ IIYV HF +F+A + G+
Sbjct: 128 DKDRVLVRSDGTYTYFTRDIAYHLDKF-ERGADKIIYVVGADHHGHFKRLFAALELLGYD 186
Query: 367 SADDSTYPKASHVGFGLVLGEDGKRLRTR 395
A K H+ +G+V ++ TR
Sbjct: 187 EAK-----KLEHLLYGMVNLPKEGKMSTR 210
>gnl|CDD|153410 cd07956, Anticodon_Ia_Arg, Anticodon-binding domain of arginyl tRNA
synthetases. This domain is found in arginyl tRNA
synthetases (ArgRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ArgRS catalyzes the
transfer of arginine to the 3'-end of its tRNA.
Length = 156
Score = 129 bits (326), Expect = 3e-35
Identities = 54/119 (45%), Positives = 77/119 (64%)
Query: 436 EAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEEL 495
E VG GA KY DL N R+ +YTF +++ML+ +G+T YL YAHAR+CSI+RK+G+ IE
Sbjct: 1 EEVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAE 60
Query: 496 KKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQV 554
+L DER L L L F EV++ A L P+ + YL++L+ F++FY+ C V
Sbjct: 61 ADADLSLLPEPDERDLILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPV 119
>gnl|CDD|218729 pfam05746, DALR_1, DALR anticodon binding domain. This all alpha
helical domain is the anticodon binding domain in
Arginyl and glycyl tRNA synthetase. This domain is known
as the DALR domain after characteristic conserved amino
acids.
Length = 117
Score = 91.9 bits (229), Expect = 2e-22
Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 474 LLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNV 533
L YAHARICSI+RK+G+ L L L +E+ L LL F EV+EEA L P+
Sbjct: 1 LQYAHARICSILRKAGELGINLDIDADL-LTEEEEKELLKALLQFPEVLEEAAEELEPHR 59
Query: 534 VCEYLYNLSEYFTRFYSNCQV 554
+ YLY L+ F FY+NC+V
Sbjct: 60 LANYLYELASAFHSFYNNCRV 80
>gnl|CDD|214846 smart00836, DALR_1, DALR anticodon binding domain. This all alpha
helical domain is the anticodon binding domain of
Arginyl tRNA synthetase. This domain is known as the
DALR domain after characteristic conserved amino acids.
Length = 122
Score = 89.2 bits (222), Expect = 2e-21
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 474 LLYAHARICSIIRKS---GKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLL 530
+ YAHARICSI+RK+ G+ + ++ +L +E AL L L F EV+E A L
Sbjct: 1 VQYAHARICSILRKAGEAGETLPDIADADLSLLTEPEEWALLLKLARFPEVLEAAAEQLE 60
Query: 531 PNVVCEYLYNLSEYFTRFYSNCQV 554
P+ + YLY+L+ F FY+ +V
Sbjct: 61 PHRLANYLYDLAAAFHSFYNRVRV 84
>gnl|CDD|217589 pfam03485, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal
domain. This domain is found at the amino terminus of
Arginyl tRNA synthetase, also called additional domain 1
(Add-1). It is about 140 residues long and it has been
suggested that this domain will be involved in tRNA
recognition.
Length = 84
Score = 72.3 bits (178), Expect = 9e-16
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 14 ELEKVFDLALKATVPNETDVRPLIAACT-AKFGDYQCNNAMGLWSKIKGKGTEFKGPQPV 72
L+K AL + + P+I +FGDY N AM L K+K K P+ +
Sbjct: 2 LLKKAIAEALAKAGLDLEVIDPVIETPKDPEFGDYATNVAMKLAKKLK------KNPREI 55
Query: 73 GQAIMKNLPPSEMIESCSVAGPGFVNVVL 101
+ I + LP S++IE VAGPGF+N L
Sbjct: 56 AEEIAEKLPKSDLIEKVEVAGPGFINFFL 84
>gnl|CDD|214975 smart01016, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal
dom. This domain is found at the amino terminus of
Arginyl tRNA synthetase, also called additional domain 1
(Add-1). It is about 140 residues long and it has been
suggested that this domain will be involved in tRNA
recognition.
Length = 85
Score = 63.8 bits (156), Expect = 7e-13
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 13 RELEKVFDLALKATVPNET-DVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQ 70
L++ ALK + E + + GDY N A L K+K K P+
Sbjct: 1 DLLKEAIAEALKKALGVEGEPIDIALERPKDPDHGDYATNVAFRLAKKLK------KNPR 54
Query: 71 PVGQAIMKNLPPSEMIESCSVAGPGFVNVVL 101
+ + I + LP S+++E +AGPGF+N L
Sbjct: 55 ELAEEIAEKLPKSDLVEKVEIAGPGFINFFL 85
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 50.6 bits (121), Expect = 2e-07
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 10/90 (11%)
Query: 132 VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEK 191
FS +H+GHLR+ + D LA+ +V + D G G
Sbjct: 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDP------- 53
Query: 192 FPNSEDANETAIGELQEFYRRSKNRFDSDP 221
+ E A ++ + R K +
Sbjct: 54 ---ANKKGENAKAFVERWIERIKEDVEYMF 80
>gnl|CDD|235953 PRK07188, PRK07188, nicotinate phosphoribosyltransferase;
Provisional.
Length = 352
Score = 34.2 bits (79), Expect = 0.18
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 452 RLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKD 491
RLTN TF FD+ + + +AVY L + II K +
Sbjct: 1 RLTNKTFKFDERIGEGWYSAVYFL----KTREIIEKFNPN 36
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 33.5 bits (77), Expect = 0.34
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 144 HVGHLRSTIIGDSLARMLEFSNVEVL 169
H+GH +TI+ D AR EVL
Sbjct: 15 HLGHAYTTILADVYARYKRLRGYEVL 40
>gnl|CDD|224661 COG1747, COG1747, Uncharacterized N-terminal domain of the
transcription elongation factor GreA [Function unknown].
Length = 711
Score = 33.4 bits (76), Expect = 0.37
Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 130 AVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF 189
++ N K V HL + ++ ++M ++ + N + + L+EY
Sbjct: 71 TLLTIFGDNH-KNQIVEHLCTRVLEYGESKMALLELLQCYKENGNEQLYSLWERLVEY-- 127
Query: 190 EKFPNSEDANETAIG-ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQI 248
D N+ IG EL + Y + K + F + + + R Q+ K E W ++
Sbjct: 128 -------DFNDVVIGRELADKYEKIKKS-KAAEFFGKALYRFIPRRQNAAIK--EVWEKL 177
Query: 249 CEISRKEFDKVYKRLRVDLEEK 270
E+ + D RL+ ++ K
Sbjct: 178 PELIGDDKDFFL-RLQKKIQTK 198
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 32.6 bits (75), Expect = 0.53
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 143 MHVGHLRSTIIGDSLARMLEFSNVEVL 169
+HVGH+R+ IGD +AR VL
Sbjct: 15 LHVGHVRTYTIGDIIARYKRMQGYNVL 41
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 32.5 bits (75), Expect = 0.58
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 144 HVGHLRSTIIGDSLARMLEFSNVEVL 169
H+GHL T++ D AR +VL
Sbjct: 16 HLGHLYGTVLADVFARYQRLRGYDVL 41
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 32.2 bits (74), Expect = 0.74
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 144 HVGHLRSTIIGDSLARMLEFSNVEVL 169
H+GHL + + D AR L EV
Sbjct: 21 HLGHLYTYLAADVYARYLRLRGYEVF 46
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 32.1 bits (74), Expect = 0.88
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 143 MHVGHLRSTIIGDSLAR 159
+HVGH R+ IGD +AR
Sbjct: 1 LHVGHGRTYTIGDVIAR 17
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 31.9 bits (73), Expect = 1.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 143 MHVGHLRSTIIGDSLARMLEFSNVEVL 169
+HVGH+R+ IGD +AR VL
Sbjct: 49 LHVGHVRNYTIGDVIARYKRMQGYNVL 75
>gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional.
Length = 263
Score = 31.1 bits (71), Expect = 1.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 21 LALKATVPNETDVRPLIAACTAKFG--DYQCNNA-MGLWSKI 59
L + V + LI A A+FG D NNA + +WS+
Sbjct: 53 LVVPTDVSDAEACERLIEAAVARFGGIDILVNNAGITMWSRF 94
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 31.2 bits (72), Expect = 1.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 144 HVGHLRSTIIGDSLARM 160
H+GH+R+ IGD +AR
Sbjct: 48 HMGHVRNYTIGDVIARY 64
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 31.2 bits (71), Expect = 1.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 144 HVGHLRSTIIGDSLARMLEFSNVEV 168
H+GH R+ I+ D L R L + +V
Sbjct: 36 HIGHARTAIVFDVLRRYLRYLGYKV 60
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 30.6 bits (70), Expect = 1.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 144 HVGHLRSTIIGDSLARMLEFSNVEV 168
H+GH R+ ++ D L R LE +V
Sbjct: 35 HIGHARTYVVFDVLRRYLEDLGYKV 59
>gnl|CDD|212504 cd11645, Precorrin_2_C20_MT, Precorrin-2 C20-methyltransferase,
also named CobI or CbiL. Precorrin-2
C20-methyltransferase participates in the pathway toward
the biosynthesis of cobalamin (vitamin B12). There are
two distinct cobalamin biosynthetic pathways in
bacteria. The aerobic pathway requires oxygen, and
cobalt is inserted late in the pathway; the anaerobic
pathway does not require oxygen, and cobalt insertion is
the first committed step towards cobalamin synthesis.
Precorrin-2 C20-methyltransferase catalyzes methylation
at the C-20 position of a cyclic tetrapyrrole ring of
precorrin-2 using S-adenosylmethionine as a methyl group
source to produce precorrin-3A. In the anaerobic
pathway, cobalt is inserted into precorrin-2 by CbiK to
generate cobalt-precorrin-2, which is the substrate for
CbiL, a C20 methyltransferase. In Clostridium difficile,
CbiK and CbiL are fused into a bifunctional enzyme. In
the aerobic pathway, the precorrin-2
C20-methyltransferase is named CobI. This family
includes CbiL and CobI precorrin-2
C20-methyltransferases, both as stand-alone enzymes and
when CbiL forms part of a bifunctional enzyme.
Length = 226
Score = 30.6 bits (70), Expect = 1.8
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 23/88 (26%)
Query: 376 ASHVGFGLVLGEDG----------KRLRTRFSE---VV---------RLVDLLDEAKNRS 413
A+ +G L G++ + L VV + +LL+EA
Sbjct: 132 AARLGIPLAEGDERLAILPATLGEEELEEALELFDTVVLMKVGRNLDEVRELLEEAGLLD 191
Query: 414 KAVLIER-GKDKEWTEEELEQTAEAVGY 440
+AV +ER G + E +LE E + Y
Sbjct: 192 RAVYVERCGMEGERIVRDLEADPEKLPY 219
>gnl|CDD|238164 cd00264, BPI, BPI/LBP/CETP domain; Bactericidal
permeability-increasing protein (BPI) /
Lipopolysaccharide-binding protein (LBP) / Cholesteryl
ester transfer protein (CETP) domain; binds to and
neutralizes lipopolysaccharides from the outer membrane
of Gram-negative bacteria.; Apolar pockets on the
concave surface bind a molecule of phosphatidylcholine,
primarily by interacting with their acyl chains; this
suggests that the pockets may also bind the acyl chains
of lipopolysaccharide.
Length = 208
Score = 30.4 bits (69), Expect = 1.9
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 498 TGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLY 539
T SL L + L ++ F I L +L ++C +
Sbjct: 120 TLSLSLCSSTVELLSSNIGGFGNFIVSLLQKVLNTILCPVVL 161
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 30.7 bits (70), Expect = 2.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 144 HVGHLRSTIIGDSLARMLEFSNVEVL 169
H+GHL +TI D AR L +VL
Sbjct: 15 HIGHLYTTIPADVYARYLRLRGYDVL 40
>gnl|CDD|236389 PRK09134, PRK09134, short chain dehydrogenase; Provisional.
Length = 258
Score = 30.3 bits (69), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 22 ALKATVPNETDVRPLIAACTAKFGDYQC--NNA 52
AL+A + +E +VR L+A +A G NNA
Sbjct: 63 ALQADLADEAEVRALVARASAALGPITLLVNNA 95
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 30.5 bits (69), Expect = 2.6
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 119 ETWAPKLRVKKAVVDFSSPNI---------AKEMHVGHLRSTIIGDSLARM 160
+ W + K D S P + +H+GH+R+ I D L+R
Sbjct: 12 QKWDEN-KTFKVTDDSSKPKYYILSMFPYPSGALHMGHVRNYTITDVLSRY 61
>gnl|CDD|222260 pfam13609, Porin_4, Gram-negative porin.
Length = 310
Score = 29.3 bits (66), Expect = 5.7
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 437 AVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHAR 480
GYG + T Y L+ T +Y Y +
Sbjct: 265 GAGYGNGDATGGADADATAYGLGATYNLS--KRTTLYAEYGYVD 306
>gnl|CDD|216798 pfam01937, DUF89, Protein of unknown function DUF89. This family
has no known function.
Length = 315
Score = 29.2 bits (66), Expect = 5.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 325 DLAALWYRLNEEKAEWIIYVTD-VGQQLHFDMVF 357
D ALW RL +A+ + YV D G +L FD++
Sbjct: 149 DTDALWERLKGSRAKRVDYVLDNAGFELVFDLLL 182
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 29.5 bits (66), Expect = 5.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 448 LKNNRLTNYTFSFDQMLNDKGNTAVYL 474
++ N++ TF+ Q++NDKG AV+L
Sbjct: 497 IETNKVIGKTFTVPQLMNDKGFDAVFL 523
>gnl|CDD|151393 pfam10946, DUF2625, Protein of unknown function DUF2625. Some
members in this family of proteins are annotated as ybfG
however currently no function is known.
Length = 208
Score = 28.9 bits (65), Expect = 5.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 197 DANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQ 235
D E A L+E+ +KN + PA + A ++ LQ
Sbjct: 6 DKEEPAWPLLREWLAEAKNHVEILPADSDLAGTELLALQ 44
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 29.5 bits (66), Expect = 5.9
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 128 KKAVVDFSSPNIAKEM-HVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIE 186
KKA + + P A + H GHL + II D + R V R+ W G+ IE
Sbjct: 101 KKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKF---GWDCH-GLPIE 156
Query: 187 YLFEKFPN 194
Y EK N
Sbjct: 157 YEIEKENN 164
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 29.3 bits (67), Expect = 6.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 144 HVGHLRSTIIGDSLARMLEFSNVEV 168
H+GH RS ++ D L R L + +V
Sbjct: 38 HIGHARSFVVFDVLRRYLRYLGYKV 62
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 29.0 bits (66), Expect = 8.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 144 HVGHLRSTIIGDSLAR 159
H+GH +TI D+LAR
Sbjct: 20 HIGHAYTTIAADALAR 35
>gnl|CDD|219491 pfam07632, DUF1593, Protein of unknown function (DUF1593). A
family of proteins in Rhodopirellula baltica that are
predicted to be secreted. Also, a member has been
identified in Caulobacter crescentus. These proteins mat
be related to pfam01156.
Length = 260
Score = 28.4 bits (64), Expect = 8.3
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 13/54 (24%)
Query: 73 GQAIMKNLPPSEMIESCSVAG-------------PGFVNVVLSKNWMAKNIQKM 113
G I KN P I S SV G G N +SK W+ +NIQ
Sbjct: 163 GAWIRKNFPDLFYIASESVHGGNQYGAATWKGIVGGPDNSYVSKEWLKENIQSH 216
>gnl|CDD|237235 PRK12857, PRK12857, fructose-1,6-bisphosphate aldolase; Reviewed.
Length = 284
Score = 28.5 bits (64), Expect = 8.5
Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 304 EGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAK-- 361
E P+II S G YA + + R EKA V LH D +
Sbjct: 39 EAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKA-------SVPVALHLDHGTDFEQVM 91
Query: 362 ---RAGWLSA--DDSTYPKASHV 379
R G+ S D S P ++
Sbjct: 92 KCIRNGFTSVMIDGSKLPLEENI 114
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 28.7 bits (65), Expect = 9.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 144 HVGHLRSTIIGDSLARMLEFSNVEV 168
H+GH R+ ++ D L R L + +V
Sbjct: 37 HIGHARTYVVFDVLRRYLRYLGYKV 61
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 28.5 bits (64), Expect = 9.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 144 HVGHLRSTIIGDSLARMLEFSNVEV 168
H+GH RS + D L R L+ +V
Sbjct: 24 HIGHARSAVAFDVLRRYLQALGYDV 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.395
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,103,348
Number of extensions: 2930618
Number of successful extensions: 3160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3110
Number of HSP's successfully gapped: 61
Length of query: 555
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 453
Effective length of database: 6,413,494
Effective search space: 2905312782
Effective search space used: 2905312782
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)