BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008745
(555 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AVM|A Chain A, Crystal Structure Of The N-Bar Domain Of Human Bridging
Integrator 2
Length = 237
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 21/160 (13%)
Query: 129 SCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDEN 188
+ NF Q A + D ++ +SA++ + + +S LQ +++ +WD
Sbjct: 39 ASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVS-ETLQEIYSS--------EWDGHE 89
Query: 189 SVLRSINQCDRVWESIDPNRRGQCLGLL--FYNELLHIFYRL-----RICDYKNAAHHVD 241
+ + D +WE + Q + + + + I R+ ++ DY +A HH++
Sbjct: 90 ELKAIVWNNDLLWEDYEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLE 149
Query: 242 NLDAAMKADKQKM----QEIQQLSSELDALNQSLSRPDLP 277
+ A K D+ K +E + + + LNQ L +LP
Sbjct: 150 AVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELL-EELP 188
>pdb|4I1Q|A Chain A, Crystal Structure Of Hbrap1 N-bar Domain
pdb|4I1Q|B Chain B, Crystal Structure Of Hbrap1 N-bar Domain
Length = 221
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 20/154 (12%)
Query: 129 SCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDEN 188
+ NF Q A + D ++ +SA++ + + +S LQ +++ +WD
Sbjct: 30 ANNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVS-ETLQEIYSS--------EWDGHE 80
Query: 189 SVLRSINQCDRVWESIDPNRRGQCLGLL--FYNELLHIFYRL-----RICDYKNAAHHVD 241
+ + D +WE + Q + + + + I R+ ++ DY +A HH++
Sbjct: 81 ELKAIVWNNDLLWEDYEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLE 140
Query: 242 NLDAAMKADKQKM----QEIQQLSSELDALNQSL 271
+ A K D+ K +E + + + LNQ L
Sbjct: 141 AVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQEL 174
>pdb|3SOG|A Chain A, Crystal Structure Of The Bar Domain Of Human Amphiphysin,
Isoform 1
Length = 205
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 72/175 (41%), Gaps = 27/175 (15%)
Query: 118 SASQDVAVKLWSCNFNSQLANAFIIEGD---YQSSISALQSGYVCATEISYPDLQMFFAT 174
S ++D + + NF Q A ++ + Y ++I +Q + TE
Sbjct: 1 SMTKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTE------------ 48
Query: 175 AILHVHLMQWDDENSVLRSINQCDRVWESIDPNR-RGQCLGLLFY-NELLHIFYRL---- 228
++ V+ W V +CD +WE G L L Y + I R+
Sbjct: 49 SLHEVYEPDWYGREDVKMVGEKCDVLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRS 108
Query: 229 -RICDYKNAAHHVDNLDAAMKADKQKM----QEIQQLSSELDALNQSLSRPDLPS 278
++ DY +A HH++ L ++ + D+ ++ +E Q+ + N L + +LPS
Sbjct: 109 RKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDL-QEELPS 162
>pdb|4ATM|A Chain A, Crystal Structure Of The Bar Domain Of Human Amphiphysin,
Isoform 1 At 1.8 Angstrom Resolution Featuring Increased
Order At The N-Terminus
Length = 243
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 156 GYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGL 215
GY+ A + + M ++ V+ W V +CD +WE + L
Sbjct: 63 GYLAAIK-GMQEASMKLTESLHEVYEPDWYGREDVKMVGEKCDVLWEDFHQKLVDESLLT 121
Query: 216 L--FYNELLHIFYRL-----RICDYKNAAHHVDNLDAAMKADKQKM----QEIQQLSSEL 264
L + + I R+ ++ DY +A HH++ L ++ + D+ ++ +E Q+
Sbjct: 122 LDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVF 181
Query: 265 DALNQSLSRPDLPS 278
+ N L + +LPS
Sbjct: 182 EEFNVDL-QEELPS 194
>pdb|2CW6|A Chain A, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|B Chain B, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|C Chain C, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|D Chain D, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|E Chain E, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|2CW6|F Chain F, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into
Catalysis And The Molecular Basis For
Hydroxymethylglutaric Aciduria
pdb|3MP3|A Chain A, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|B Chain B, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|C Chain C, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|D Chain D, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|E Chain E, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
pdb|3MP3|F Chain F, Crystal Structure Of Human Lyase In Complex With Inhibitor
Hg-Coa
Length = 298
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 21/107 (19%)
Query: 438 FIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 497
F RF IL+A +S +RG + ++GC E + A++T+ +
Sbjct: 120 FQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTK--------------KF 165
Query: 498 FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASL-------HFAYG 537
+ +G E S +G MKD ++ V +E L H YG
Sbjct: 166 YSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYG 212
>pdb|3MP4|A Chain A, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|B Chain B, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|C Chain C, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|D Chain D, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|E Chain E, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP4|F Chain F, Crystal Structure Of Human Lyase R41m Mutant
pdb|3MP5|A Chain A, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|B Chain B, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|C Chain C, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|D Chain D, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|E Chain E, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
pdb|3MP5|F Chain F, Crystal Structure Of Human Lyase R41m In Complex With
Hmg-Coa
Length = 298
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 21/107 (19%)
Query: 438 FIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 497
F RF IL+A +S +RG + ++GC E + A++T+ +
Sbjct: 120 FQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTK--------------KF 165
Query: 498 FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASL-------HFAYG 537
+ +G E S +G MKD ++ V +E L H YG
Sbjct: 166 YSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYG 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,580,810
Number of Sequences: 62578
Number of extensions: 536105
Number of successful extensions: 1215
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1214
Number of HSP's gapped (non-prelim): 9
length of query: 555
length of database: 14,973,337
effective HSP length: 104
effective length of query: 451
effective length of database: 8,465,225
effective search space: 3817816475
effective search space used: 3817816475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)