BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008745
(555 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q16NZ8|SCC4_AEDAE MAU2 chromatid cohesion factor homolog OS=Aedes aegypti
GN=AAEL011819 PE=3 SV=1
Length = 620
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 25/256 (9%)
Query: 7 GLWGLADYHENKG--EIGKAVKCLEAICQSHVSFLPI--IEVKTRLRISTLLLKHTHNVN 62
L GLA+Y I K ++CL+A+ +F P +E +T L++ +L+ +T N +
Sbjct: 11 SLLGLAEYFRTSSPPNIKKCIQCLQAL----FTFKPPLKVEARTHLQLGQILMAYTKNTD 66
Query: 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122
A++HLE++ +L + I + ++K T SLL+Q Y K +L KA++L+
Sbjct: 67 LARNHLEQAWMLSENINNFDDVKFDTASLLAQLYQQQEQSSLAKPVLRKAIELSQHNV-- 124
Query: 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLM 182
W C QLA + +Y + L G E + L+ F + + ++
Sbjct: 125 ----YWHCKLLFQLAQTHATDKEYALASELLAVGVESTDETNATYLKTLFLLSRAMIMMI 180
Query: 183 QWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHI-FYRLRICDYKNAAHHVD 241
+ VL +NQ + ++ N + E L + FY L++C Y V
Sbjct: 181 E-RKTGDVLTILNQAGTMIDNAVQN--------IHLKEYLKVFFYVLQVCHYLQLG-QVK 230
Query: 242 NLDAAMKADKQKMQEI 257
+ ++K +Q +Q I
Sbjct: 231 TVKTSLKQLQQSIQTI 246
>sp|B4PS83|SCC4_DROYA MAU2 chromatid cohesion factor homolog OS=Drosophila yakuba
GN=GE24275 PE=3 SV=1
Length = 632
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 122/257 (47%), Gaps = 27/257 (10%)
Query: 7 GLWGLADYHENK--GEIGKAVKCLEAICQSHVSFLPI--IEVKTRLRISTLLLKHTHNVN 62
L GLA+Y I K ++CL+A+ +F+P +E +T L++ +L+ +T N++
Sbjct: 19 SLLGLAEYFRTSQPPNIKKCIQCLQAL----FTFMPPSKVEARTHLQMGQILMAYTKNID 74
Query: 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQ-KLILYKALDLTSSASQ 121
A+ HLE++ + + +P+ F++K T SLL+Q + Q K +L +A++L+ +
Sbjct: 75 LARQHLEKAWSISEPLPN-FDVKFDTASLLAQLHLQTDKNSHQAKAMLRRAVELSQNNV- 132
Query: 122 DVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHL 181
W C QLA + +Y + L G A E S L++ F + + L
Sbjct: 133 -----YWHCKLLLQLAQIHASDREYSLASELLAVGAESADEASATYLKVLFLLSRAMI-L 186
Query: 182 MQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYR-LRICDYKNAAHHV 240
M N VL +N ++ ++ PN + E L +F+ L++C Y A V
Sbjct: 187 MIERKTNDVLALLNSAGQIIDNNIPNPHQK--------EYLKVFFLVLQVC-YYLALGQV 237
Query: 241 DNLDAAMKADKQKMQEI 257
+ ++K + +Q I
Sbjct: 238 KTVKPSLKQLQMSIQTI 254
>sp|Q9VFC0|SCC4_DROME MAU2 chromatid cohesion factor homolog OS=Drosophila melanogaster
GN=CG4203 PE=2 SV=1
Length = 632
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 122/257 (47%), Gaps = 27/257 (10%)
Query: 7 GLWGLADYHENK--GEIGKAVKCLEAICQSHVSFLPI--IEVKTRLRISTLLLKHTHNVN 62
L GLA+Y I K ++CL+A+ +F+P +E +T L++ +L+ +T N++
Sbjct: 19 SLLGLAEYFRTSQPPNIKKCIQCLQAL----FTFMPPSKVEARTHLQMGQILMAYTKNID 74
Query: 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQ-KLILYKALDLTSSASQ 121
A+ HLE++ + + +P+ F++K T SLL+Q + Q K +L +A++L+ +
Sbjct: 75 LARQHLEKAWSISEPLPN-FDVKFDTASLLAQLHLQTDRNSHQAKAMLRRAVELSQNNV- 132
Query: 122 DVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHL 181
W C QLA + +Y + L G A E S L++ F + + L
Sbjct: 133 -----YWHCKLLLQLAQIHASDREYSLASELLAVGAESADEASATYLKVLFLLSRAMI-L 186
Query: 182 MQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYR-LRICDYKNAAHHV 240
M N VL +N ++ ++ PN + E L +F+ L++C Y A V
Sbjct: 187 MIERKTNDVLALLNSAGQIIDNNIPNPHQK--------EYLKVFFLVLQVC-YYLALGQV 237
Query: 241 DNLDAAMKADKQKMQEI 257
+ ++K + +Q I
Sbjct: 238 KTVKPSLKQLQMSIQTI 254
>sp|B0WYS3|SCC4_CULQU MAU2 chromatid cohesion factor homolog OS=Culex quinquefasciatus
GN=CPIJ012302 PE=3 SV=1
Length = 616
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 115/256 (44%), Gaps = 25/256 (9%)
Query: 7 GLWGLADYHENKG--EIGKAVKCLEAICQSHVSFLPI--IEVKTRLRISTLLLKHTHNVN 62
L GLA+Y I K ++CL+A+ +F P +E +T L++ +L+ +T N
Sbjct: 11 SLLGLAEYFRTSSPPNIKKCIQCLQAL----FTFKPPLKVEARTHLQLGQILMAYTKNTE 66
Query: 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122
A++HLE++ +L + I + ++K T SLL+Q Y K +L KA++L+
Sbjct: 67 LARNHLEQAWMLSENINNFDDVKFDTASLLAQLYQQQEQSSLAKPVLRKAIELSQHNV-- 124
Query: 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLM 182
W C QLA + +Y + L G E + L+ F + + ++
Sbjct: 125 ----YWHCKLLFQLAQTHATDKEYALASELLAVGVESTDESNATYLKSLFLLSRAMIMMI 180
Query: 183 QWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHI-FYRLRICDYKNAAHHVD 241
+ + VL +NQ + ++ N + E L + F+ L++C Y V
Sbjct: 181 ERKSSD-VLAILNQAGTIIDNAIQN--------IHLKEYLKVFFFVLQVCHYLQLG-QVK 230
Query: 242 NLDAAMKADKQKMQEI 257
+ ++K +Q +Q I
Sbjct: 231 TVKTSLKQLQQSIQTI 246
>sp|Q9Y6X3|SCC4_HUMAN MAU2 chromatid cohesion factor homolog OS=Homo sapiens GN=MAU2 PE=1
SV=2
Length = 613
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 14/154 (9%)
Query: 7 GLWGLADYHENKG--EIGKAVKCLEAICQSHVSFLPI--IEVKTRLRISTLLLKHTHNVN 62
L G A++ +I V CL+A+ F P IE +T L++ ++L HT N
Sbjct: 28 ALLGFAEHFRTSSPPKIRLCVHCLQAV----FPFKPPQRIEARTHLQLGSVLYHHTKNSE 83
Query: 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122
A+SHLE++ L+ + IP ++K SLLS+ Y ++ K +L KA+ ++
Sbjct: 84 QARSHLEKAWLISQQIPQFEDVKFEAASLLSELYCQENSVDAAKPLLRKAIQISQQ---- 139
Query: 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSG 156
W C QLA +E D S+ L G
Sbjct: 140 --TPYWHCRLLFQLAQLHTLEKDLVSACDLLGVG 171
>sp|Q9D2X5|SCC4_MOUSE MAU2 chromatid cohesion factor homolog OS=Mus musculus GN=Mau2 PE=2
SV=3
Length = 619
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 14/154 (9%)
Query: 7 GLWGLADYHENKG--EIGKAVKCLEAICQSHVSFLPI--IEVKTRLRISTLLLKHTHNVN 62
L G A++ +I V CL+A+ F P IE +T L++ ++L HT N
Sbjct: 34 ALLGFAEHFRTSSPPKIRLCVHCLQAV----FPFKPPQRIEARTHLQLGSVLYHHTKNSE 89
Query: 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122
A+SHLE++ L+ + IP ++K SLLS+ Y ++ K +L KA+ ++
Sbjct: 90 QARSHLEKAWLISQQIPQFEDVKFEAASLLSELYCQENSVDAAKPLLRKAIQISQQ---- 145
Query: 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSG 156
W C QLA +E D S+ L G
Sbjct: 146 --TPYWHCRLLFQLAQLHTLEKDLVSACDLLGVG 177
>sp|B1H1Z8|SCC4_XENTR MAU2 chromatid cohesion factor homolog OS=Xenopus tropicalis
GN=mau2 PE=2 SV=1
Length = 604
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 14/154 (9%)
Query: 7 GLWGLADYHENKG--EIGKAVKCLEAICQSHVSFLPI--IEVKTRLRISTLLLKHTHNVN 62
L G A++ +I V CL+A+ Q F P IE +T L++ ++L HT N
Sbjct: 20 ALLGFAEHFRTSSPPKIRLCVHCLQAVFQ----FKPSQRIEARTHLQLGSVLYHHTKNSE 75
Query: 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122
A+ HLE++ L+ + IP ++K SLLS+ Y ++ K +L KA+ ++
Sbjct: 76 LARQHLEKAWLISQQIPQFEDVKFEAASLLSELYCQENSVDAAKPLLRKAIQISQQ---- 131
Query: 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSG 156
W C QLA +E D S+ L G
Sbjct: 132 --TPYWHCRLLFQLAQLHTLEKDLVSACDLLGVG 163
>sp|B4JHK2|SCC4_DROGR MAU2 chromatid cohesion factor homolog OS=Drosophila grimshawi
GN=GH18976 PE=3 SV=1
Length = 623
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 129/290 (44%), Gaps = 40/290 (13%)
Query: 7 GLWGLADYHENK--GEIGKAVKCLEAICQSHVSFLPI--IEVKTRLRISTLLLKHTHNVN 62
L GLA+Y I K ++CL+A+ +F P +E +T L++ +L+ +T N++
Sbjct: 17 SLLGLAEYFRTSQPPNIKKCIQCLQAL----FTFQPPSKVEARTHLQMGQVLMAYTCNID 72
Query: 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122
A+ HLE++ + + + + ++K T SLL+Q + P K +L +A++L+ +
Sbjct: 73 LARRHLEQAWSISEPLMNFDDVKFDTASLLAQLHLKTEQSPHAKAMLRRAVELSQNNV-- 130
Query: 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLM 182
W C QL+ + +Y + L G A E L++ F + + LM
Sbjct: 131 ----YWHCKLLLQLSQIHANDREYSLASDLLAVGAESAEEAGATYLKVLFLLSRAMI-LM 185
Query: 183 QWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYR-LRICDYKNAAHHVD 241
N VL +N ++ ++ PN + E L +F+ L++C Y
Sbjct: 186 IERKTNDVLALLNSAGQIIDNNIPNPHQK--------EYLKVFFLVLQVCYY-------- 229
Query: 242 NLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKL 291
A+ K ++QL + Q++ P+ PS E S G Q ++
Sbjct: 230 ---LALGQVKTVKPSLKQLQMSI----QTIMAPNWPSDE-SIFGGNQLEM 271
>sp|B4NKT1|SCC4_DROWI MAU2 chromatid cohesion factor homolog OS=Drosophila willistoni
GN=GK13302 PE=3 SV=2
Length = 663
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 120/257 (46%), Gaps = 26/257 (10%)
Query: 7 GLWGLADYHENK--GEIGKAVKCLEAICQSHVSFLPI--IEVKTRLRISTLLLKHTHNVN 62
L GLA+Y I K ++CL+A+ +F P +E +T L++ +L+ +T N++
Sbjct: 19 SLLGLAEYFRTSQPPNIKKCIQCLQAL----FTFTPPSKVEARTHLQMGQILMAYTRNID 74
Query: 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCY-HLVGAIPPQKLILYKALDLTSSASQ 121
A+ HLE++ + +++ + ++K T SLL+Q + + K +L +A++L+ +
Sbjct: 75 MARQHLEKAWNISESLMNFDDVKFDTASLLAQLHLQTEPSSNAAKAMLRRAVELSQNNV- 133
Query: 122 DVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHL 181
W C QL+ + +Y S+ L G A E L++ F + + L
Sbjct: 134 -----YWHCKLLLQLSQIHASDREYSSASELLAVGADSAEEAGATYLKVLFLLSRAMI-L 187
Query: 182 MQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYR-LRICDYKNAAHHV 240
M N VL +N ++ ++ PN + E L +F+ L++C Y A V
Sbjct: 188 MIERKTNDVLALLNSAGQIIDNNIPNPHQK--------EYLKVFFLVLQVCYYL-ALGQV 238
Query: 241 DNLDAAMKADKQKMQEI 257
+ ++K + +Q I
Sbjct: 239 KTVKPSLKQLQMSIQTI 255
>sp|B4ZIX8|SCC4_XENLA MAU2 chromatid cohesion factor homolog OS=Xenopus laevis GN=mau2
PE=1 SV=1
Length = 607
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 14/154 (9%)
Query: 7 GLWGLADYHENKG--EIGKAVKCLEAICQSHVSFLPI--IEVKTRLRISTLLLKHTHNVN 62
L G A++ +I V CL+A+ Q F P IE +T L++ ++L HT N
Sbjct: 23 ALLGFAEHFRTSSPPKIRLCVHCLQAVFQ----FKPPQRIEARTHLQLGSVLYHHTKNSE 78
Query: 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122
A+ HLE++ + + IP ++K SLLS+ Y ++ K +L KA+ ++
Sbjct: 79 LARQHLEKAWFISQQIPQFEDVKFEAASLLSELYCQENSVDAAKPLLRKAIQISQQ---- 134
Query: 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSG 156
W C QLA +E D S+ L G
Sbjct: 135 --TPYWHCRLLFQLAQLHTLEKDLVSACDLLGVG 166
>sp|B3M1B7|SCC4_DROAN MAU2 chromatid cohesion factor homolog OS=Drosophila ananassae
GN=GF17837 PE=3 SV=1
Length = 639
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 119/257 (46%), Gaps = 27/257 (10%)
Query: 7 GLWGLADYHENK--GEIGKAVKCLEAICQSHVSFLPI--IEVKTRLRISTLLLKHTHNVN 62
L GLA+Y I K ++CL+A+ +F+P +E +T L++ +L+ +T N++
Sbjct: 19 SLLGLAEYFRTSQPPNIKKCIQCLQAL----FTFMPPSKVEARTHLQMGQILMAYTQNID 74
Query: 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQ-KLILYKALDLTSSASQ 121
A+ HLE++ + + + + F++K T SLL+Q + Q K +L +A++L+
Sbjct: 75 LARHHLEKAWSISEPLAN-FDVKFDTASLLAQLHLQTDQNSNQAKAMLRRAVELSQHNV- 132
Query: 122 DVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHL 181
W C QLA + +Y + L G A E L++ F + + L
Sbjct: 133 -----YWHCKLLLQLAQIHASDREYSLASDLLAVGAENADEAGATYLKVLFLLSRAMI-L 186
Query: 182 MQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYR-LRICDYKNAAHHV 240
M N VL +N ++ ++ PN + E L +F+ L++C Y A V
Sbjct: 187 MIERKTNDVLALLNSAGQIIDNNIPNPHQK--------EYLKVFFLVLQVC-YYLALGQV 237
Query: 241 DNLDAAMKADKQKMQEI 257
+ ++K + +Q I
Sbjct: 238 KTVKPSLKQLQMSIQTI 254
>sp|B4M4L4|SCC4_DROVI MAU2 chromatid cohesion factor homolog OS=Drosophila virilis
GN=GJ10962 PE=3 SV=1
Length = 621
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 7 GLWGLADYHENK--GEIGKAVKCLEAICQSHVSFLPI--IEVKTRLRISTLLLKHTHNVN 62
L GLA+Y I K ++CL+A+ +F P +E +T L++ +L+ +T N++
Sbjct: 17 SLLGLAEYFRTSQPPNIKKCIQCLQAL----FTFQPPSKVEARTHLQMGQVLMAYTRNID 72
Query: 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122
A+ HLE++ + + + + ++K T SLL+Q + K +L +A++L+ +
Sbjct: 73 LARQHLEQAWSISEPLMNFDDVKFDTASLLAQLHLQTEQSSHAKAMLRRAVELSQNNV-- 130
Query: 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLM 182
W C QL+ + +Y + L G A E L++ F + + LM
Sbjct: 131 ----YWHCKLLLQLSQIHANDREYSLASDLLAVGAESAEEAGATYLKVLFLLSRAMI-LM 185
Query: 183 QWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYR-LRICDYKNAAHHVD 241
N VL +N ++ ++ PN + E L +F+ L++C Y A V
Sbjct: 186 IERKTNDVLALLNSAGQIIDNNIPNPHQK--------EYLKVFFLVLQVCYYL-ALGQVK 236
Query: 242 NLDAAMKADKQKMQEI 257
+ ++K + +Q I
Sbjct: 237 TVKPSLKQLQMSIQTI 252
>sp|B4K4X6|SCC4_DROMO MAU2 chromatid cohesion factor homolog OS=Drosophila mojavensis
GN=GI22403 PE=3 SV=1
Length = 625
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 7 GLWGLADYHENK--GEIGKAVKCLEAICQSHVSFLPI--IEVKTRLRISTLLLKHTHNVN 62
L GLA+Y I K ++CL+A+ +F P +E +T L++ +L+ +T N++
Sbjct: 17 SLLGLAEYFRTSQPPNIKKCIQCLQAL----FTFQPPSKVEARTHLQMGQVLMAYTCNID 72
Query: 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122
A+ HLE++ + + + + ++K T SLL+Q + K +L +A++L+ +
Sbjct: 73 LARRHLEQAWSIAEPLMNFDDVKFDTASLLAQLHLKTEQSSHAKAMLRRAVELSQNNV-- 130
Query: 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLM 182
W C QL+ + +Y + L G A E L++ F + + LM
Sbjct: 131 ----YWHCKLLLQLSQIHASDREYSLASDLLAVGAESAEEAGATYLKVLFLLSRAMI-LM 185
Query: 183 QWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYR-LRICDYKNAAHHVD 241
N VL +N ++ ++ PN + E L +F+ L++C Y A V
Sbjct: 186 IERKTNDVLALLNSAGQIIDNNIPNPHQK--------EYLKVFFLVLQVCYYL-ALGQVK 236
Query: 242 NLDAAMKADKQKMQEI 257
+ ++K + +Q I
Sbjct: 237 TVKPSLKQLQMSIQTI 252
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 341 AVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKL----GITDGVREV----DL 392
A+ A VDL + +GR G+ + ++R + Q + + LLKL G+ D R+V
Sbjct: 242 ALKACVDLKDLRVGR--GIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSE 299
Query: 393 QHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMI 452
++ W + L+ L KV V + F + QE ++ + TIL AC +
Sbjct: 300 RNVVTWNS------LISVLSKKVRVHEMFNLFRKMQEEMIGFS--WATLTTILPACSRVA 351
Query: 453 EMLRGQYAHS 462
+L G+ H+
Sbjct: 352 ALLTGKEIHA 361
>sp|A3CL11|METE_STRSV 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Streptococcus sanguinis (strain
SK36) GN=metE PE=3 SV=1
Length = 750
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 213 LGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLS 272
LGL+ ++ F L++ D+++ D +DA + A ++ ++ +L +E L++
Sbjct: 150 LGLVTRPVVVGPFTLLQVSDFEDGVAPADFVDALVVAYQEVFAKLAELGAERIQLDEPSL 209
Query: 273 RPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPM 332
DL + E++ KL L D G E L +YFG+ R + D + L P+
Sbjct: 210 VKDLSAEEKALFLDLYKKL------LADKK--GLEVLVQTYFGDVRDIYADLVQL---PV 258
Query: 333 DG 334
D
Sbjct: 259 DA 260
>sp|Q9XWS2|EXOC4_CAEEL Exocyst complex component 4 OS=Caenorhabditis elegans GN=sec-8 PE=2
SV=2
Length = 893
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 167 DLQMFFATAILHVHLM--QWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHI 224
+++M T ++ V L Q D NSV +I C R ESI CL LL +H
Sbjct: 667 NVKMMLDTCMVQVRLKDGQMIDNNSVPSAIEDCVRRLESI----ADSCLLLLHIEIRVHC 722
Query: 225 FYRLR-ICDYKNAAHH 239
F+ L + Y+N + H
Sbjct: 723 FFHLAPLAKYRNTSSH 738
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,124,598
Number of Sequences: 539616
Number of extensions: 6795065
Number of successful extensions: 18872
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 18834
Number of HSP's gapped (non-prelim): 52
length of query: 555
length of database: 191,569,459
effective HSP length: 123
effective length of query: 432
effective length of database: 125,196,691
effective search space: 54084970512
effective search space used: 54084970512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)