Query 008745
Match_columns 555
No_of_seqs 90 out of 92
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 16:02:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2300 Uncharacterized conser 100.0 3E-114 6E-119 906.1 45.5 458 2-553 4-468 (629)
2 PF10345 Cohesin_load: Cohesin 100.0 4.6E-66 1E-70 576.4 48.7 477 4-553 2-517 (608)
3 TIGR02917 PEP_TPR_lipo putativ 98.7 0.00022 4.7E-09 80.3 40.6 63 5-73 22-84 (899)
4 TIGR02917 PEP_TPR_lipo putativ 98.7 0.00042 9.1E-09 78.0 40.4 127 7-156 433-559 (899)
5 PRK10049 pgaA outer membrane p 98.6 0.00015 3.3E-09 84.3 36.6 382 5-551 49-448 (765)
6 PRK11447 cellulose synthase su 98.5 0.004 8.7E-08 75.8 46.0 174 7-198 183-412 (1157)
7 PRK11447 cellulose synthase su 98.5 0.00083 1.8E-08 81.6 38.8 384 8-552 115-551 (1157)
8 TIGR00990 3a0801s09 mitochondr 98.3 0.0045 9.9E-08 70.0 37.8 89 3-105 125-213 (615)
9 PRK04841 transcriptional regul 98.2 0.01 2.2E-07 69.5 36.9 372 6-552 375-753 (903)
10 TIGR00990 3a0801s09 mitochondr 98.2 0.0038 8.2E-08 70.6 31.8 155 343-551 330-488 (615)
11 PRK15174 Vi polysaccharide exp 98.1 0.0088 1.9E-07 68.7 34.5 129 6-157 43-171 (656)
12 PF10345 Cohesin_load: Cohesin 97.9 0.035 7.6E-07 63.2 33.8 309 83-552 56-426 (608)
13 PRK11788 tetratricopeptide rep 97.8 0.059 1.3E-06 56.3 31.9 126 13-157 43-168 (389)
14 PF09976 TPR_21: Tetratricopep 97.7 0.0013 2.8E-08 60.6 14.3 120 418-552 21-140 (145)
15 PRK11788 tetratricopeptide rep 97.5 0.15 3.3E-06 53.2 31.7 141 5-159 69-209 (389)
16 PRK15174 Vi polysaccharide exp 97.5 0.24 5.2E-06 57.1 33.0 122 13-158 84-205 (656)
17 PRK04841 transcriptional regul 97.4 0.45 9.7E-06 55.9 34.4 150 11-164 458-607 (903)
18 PRK10049 pgaA outer membrane p 97.3 0.38 8.3E-06 56.3 32.0 91 6-110 84-174 (765)
19 cd05804 StaR_like StaR_like; a 97.3 0.3 6.5E-06 50.5 29.5 143 4-163 5-147 (355)
20 PF09976 TPR_21: Tetratricopep 97.2 0.0035 7.6E-08 57.7 10.8 98 5-113 48-145 (145)
21 TIGR00540 hemY_coli hemY prote 97.2 0.48 1E-05 51.1 29.1 121 45-185 83-204 (409)
22 PF14938 SNAP: Soluble NSF att 97.1 0.023 4.9E-07 58.4 17.0 185 3-197 33-222 (282)
23 KOG2002 TPR-containing nuclear 97.1 0.72 1.6E-05 54.7 30.4 377 6-502 343-731 (1018)
24 TIGR02521 type_IV_pilW type IV 97.0 0.095 2.1E-06 48.8 18.3 167 4-198 30-196 (234)
25 PRK14574 hmsH outer membrane p 97.0 1.4 3E-05 52.4 39.4 121 412-551 371-505 (822)
26 TIGR02521 type_IV_pilW type IV 96.9 0.074 1.6E-06 49.6 16.9 27 347-373 34-60 (234)
27 TIGR03302 OM_YfiO outer membra 96.7 0.18 3.9E-06 49.3 18.9 171 5-183 33-218 (235)
28 PF13429 TPR_15: Tetratricopep 96.4 0.073 1.6E-06 53.9 13.9 119 345-504 147-265 (280)
29 PRK12370 invasion protein regu 96.3 0.13 2.8E-06 57.9 16.4 115 415-552 345-463 (553)
30 PRK10747 putative protoheme IX 96.2 2.2 4.8E-05 46.0 28.7 84 418-513 304-391 (398)
31 TIGR03302 OM_YfiO outer membra 96.2 0.34 7.4E-06 47.3 17.3 169 346-552 35-225 (235)
32 CHL00033 ycf3 photosystem I as 96.1 0.061 1.3E-06 50.5 11.0 98 447-550 32-133 (168)
33 PRK14574 hmsH outer membrane p 95.9 5.5 0.00012 47.5 34.6 98 345-480 417-514 (822)
34 KOG4162 Predicted calmodulin-b 95.8 0.49 1.1E-05 54.8 18.0 129 48-181 397-529 (799)
35 PRK09782 bacteriophage N4 rece 95.7 7.2 0.00016 47.5 28.5 61 412-480 681-741 (987)
36 cd05804 StaR_like StaR_like; a 95.7 2.1 4.6E-05 44.2 21.3 199 6-223 149-351 (355)
37 PF14938 SNAP: Soluble NSF att 95.6 0.56 1.2E-05 48.2 16.3 148 3-158 73-224 (282)
38 PRK10370 formate-dependent nit 95.5 0.17 3.6E-06 49.6 11.8 108 430-552 58-166 (198)
39 PF13424 TPR_12: Tetratricopep 95.4 0.16 3.5E-06 41.2 9.6 71 409-480 6-76 (78)
40 cd00189 TPR Tetratricopeptide 95.3 0.17 3.6E-06 39.1 9.1 95 7-114 2-96 (100)
41 TIGR00540 hemY_coli hemY prote 95.2 0.85 1.8E-05 49.3 16.8 163 344-552 118-285 (409)
42 TIGR02795 tol_pal_ybgF tol-pal 94.8 0.33 7.1E-06 41.4 10.0 86 415-505 9-94 (119)
43 PRK10370 formate-dependent nit 94.6 0.31 6.8E-06 47.7 10.6 100 5-116 73-174 (198)
44 cd00189 TPR Tetratricopeptide 94.5 0.36 7.8E-06 37.1 8.9 81 414-505 6-86 (100)
45 PRK11189 lipoprotein NlpI; Pro 94.5 1 2.2E-05 46.5 14.7 156 345-552 99-258 (296)
46 PRK09782 bacteriophage N4 rece 94.5 16 0.00034 44.6 31.2 97 349-483 614-710 (987)
47 PRK10747 putative protoheme IX 94.4 1.1 2.5E-05 48.2 15.5 89 449-552 262-350 (398)
48 KOG2300 Uncharacterized conser 94.4 11 0.00024 42.4 34.7 215 20-248 62-303 (629)
49 TIGR02795 tol_pal_ybgF tol-pal 94.1 0.39 8.5E-06 40.9 9.0 96 451-552 3-98 (119)
50 TIGR02552 LcrH_SycD type III s 94.0 0.63 1.4E-05 41.2 10.6 99 5-116 17-115 (135)
51 PRK02603 photosystem I assembl 94.0 0.46 9.9E-06 44.8 10.2 66 446-511 31-100 (172)
52 PF13432 TPR_16: Tetratricopep 94.0 0.35 7.6E-06 37.8 7.9 59 9-73 1-59 (65)
53 PF13424 TPR_12: Tetratricopep 93.8 0.32 7E-06 39.4 7.6 72 44-116 5-76 (78)
54 KOG1840 Kinesin light chain [C 93.8 6.6 0.00014 44.4 20.1 196 2-202 280-481 (508)
55 KOG1126 DNA-binding cell divis 93.5 6.2 0.00013 45.3 19.2 128 3-155 315-446 (638)
56 PF04733 Coatomer_E: Coatomer 93.5 0.36 7.8E-06 50.3 9.1 97 409-516 168-265 (290)
57 PF13414 TPR_11: TPR repeat; P 93.3 0.46 1E-05 37.5 7.5 65 5-74 3-67 (69)
58 PRK12370 invasion protein regu 93.1 1.6 3.5E-05 49.2 14.1 92 415-516 379-470 (553)
59 PF12895 Apc3: Anaphase-promot 92.9 0.27 5.9E-06 40.8 5.9 79 463-552 2-80 (84)
60 TIGR02552 LcrH_SycD type III s 92.7 2.5 5.5E-05 37.3 12.3 62 415-484 58-119 (135)
61 PRK15359 type III secretion sy 92.6 0.91 2E-05 42.0 9.6 96 351-484 31-126 (144)
62 PF13432 TPR_16: Tetratricopep 92.6 0.4 8.8E-06 37.5 6.1 60 415-482 4-63 (65)
63 PF10602 RPN7: 26S proteasome 92.5 1.5 3.2E-05 42.5 11.2 92 2-96 33-125 (177)
64 PF12688 TPR_5: Tetratrico pep 92.4 0.97 2.1E-05 41.3 9.2 95 451-551 2-96 (120)
65 COG2976 Uncharacterized protei 92.1 5.3 0.00012 39.9 14.4 112 429-552 70-181 (207)
66 PF12895 Apc3: Anaphase-promot 92.0 1.6 3.5E-05 36.1 9.4 83 357-476 2-84 (84)
67 PRK02603 photosystem I assembl 91.8 1.3 2.8E-05 41.8 9.7 89 5-103 35-123 (172)
68 PF13414 TPR_11: TPR repeat; P 91.8 0.7 1.5E-05 36.4 6.7 60 413-480 8-68 (69)
69 PRK10803 tol-pal system protei 91.6 1.9 4.2E-05 44.4 11.5 85 421-510 156-240 (263)
70 PF13429 TPR_15: Tetratricopep 91.6 1.6 3.4E-05 44.2 10.6 129 5-156 146-274 (280)
71 PRK11189 lipoprotein NlpI; Pro 91.5 3.2 7E-05 42.9 13.1 121 20-159 41-161 (296)
72 PLN03088 SGT1, suppressor of 91.5 1.3 2.8E-05 47.3 10.5 95 351-483 9-103 (356)
73 CHL00033 ycf3 photosystem I as 91.3 2.9 6.4E-05 39.0 11.5 101 5-115 35-142 (168)
74 KOG3060 Uncharacterized conser 91.2 5.7 0.00012 41.2 14.0 59 409-475 53-111 (289)
75 PF13371 TPR_9: Tetratricopept 91.0 1.5 3.2E-05 34.9 7.9 62 417-486 4-65 (73)
76 PRK15359 type III secretion sy 90.8 2 4.4E-05 39.7 9.7 98 8-118 27-124 (144)
77 PRK15363 pathogenicity island 90.8 3 6.5E-05 40.1 11.0 109 415-534 42-150 (157)
78 KOG1840 Kinesin light chain [C 90.4 36 0.00078 38.6 39.9 171 353-551 292-471 (508)
79 KOG3060 Uncharacterized conser 89.9 0.95 2.1E-05 46.8 7.2 65 5-74 154-220 (289)
80 PRK15179 Vi polysaccharide bio 89.9 2.6 5.6E-05 49.3 11.6 69 425-501 66-134 (694)
81 COG5010 TadD Flp pilus assembl 89.4 1.9 4.2E-05 44.4 8.9 118 415-552 107-224 (257)
82 PF10300 DUF3808: Protein of u 89.1 24 0.00052 39.3 18.0 180 20-238 172-355 (468)
83 COG2956 Predicted N-acetylgluc 89.0 9.6 0.00021 40.9 13.8 140 3-160 67-210 (389)
84 KOG1173 Anaphase-promoting com 88.4 2.7 5.8E-05 47.6 9.8 110 352-492 422-532 (611)
85 PRK10153 DNA-binding transcrip 88.3 7.7 0.00017 43.8 13.7 64 448-516 418-485 (517)
86 PF10602 RPN7: 26S proteasome 88.3 8.1 0.00017 37.4 12.1 96 449-551 35-134 (177)
87 PF07719 TPR_2: Tetratricopept 88.2 1.2 2.7E-05 30.0 4.7 32 451-482 2-33 (34)
88 PF13525 YfiO: Outer membrane 88.2 19 0.0004 35.2 14.8 118 4-129 4-126 (203)
89 PF09295 ChAPs: ChAPs (Chs5p-A 88.0 9 0.0002 41.9 13.5 120 10-155 174-293 (395)
90 PLN03088 SGT1, suppressor of 86.8 5.9 0.00013 42.3 11.2 98 7-117 4-101 (356)
91 PF08631 SPO22: Meiosis protei 86.7 31 0.00066 35.5 16.0 133 18-157 6-148 (278)
92 PF12688 TPR_5: Tetratrico pep 86.1 11 0.00023 34.5 10.9 93 6-105 2-94 (120)
93 PRK15363 pathogenicity island 86.0 16 0.00034 35.2 12.3 101 340-483 36-136 (157)
94 PRK10803 tol-pal system protei 85.8 3.5 7.7E-05 42.5 8.5 104 43-157 141-244 (263)
95 PF09295 ChAPs: ChAPs (Chs5p-A 85.5 7.4 0.00016 42.6 11.2 106 54-183 178-283 (395)
96 KOG3081 Vesicle coat complex C 85.2 17 0.00036 38.1 12.8 65 453-520 210-275 (299)
97 PF13181 TPR_8: Tetratricopept 85.1 2 4.4E-05 29.1 4.5 31 451-481 2-32 (34)
98 COG4649 Uncharacterized protei 84.8 11 0.00024 37.3 10.8 116 421-551 71-188 (221)
99 COG3063 PilF Tfp pilus assembl 84.8 6.7 0.00015 40.1 9.6 94 415-521 42-139 (250)
100 PF00515 TPR_1: Tetratricopept 84.5 2.6 5.6E-05 28.7 4.8 32 451-482 2-33 (34)
101 PF12862 Apc5: Anaphase-promot 84.3 7.4 0.00016 33.4 8.6 71 100-171 12-82 (94)
102 PF14559 TPR_19: Tetratricopep 82.6 3.6 7.8E-05 32.1 5.6 55 420-482 3-57 (68)
103 PF10300 DUF3808: Protein of u 82.5 40 0.00087 37.6 15.6 83 415-503 274-356 (468)
104 KOG0547 Translocase of outer m 82.1 69 0.0015 36.3 16.7 107 345-484 463-571 (606)
105 KOG2076 RNA polymerase III tra 81.6 1.3E+02 0.0028 36.3 24.8 312 40-550 135-469 (895)
106 PRK10153 DNA-binding transcrip 79.8 6.7 0.00015 44.3 8.4 67 414-489 426-492 (517)
107 PF14559 TPR_19: Tetratricopep 79.6 7.8 0.00017 30.1 6.5 49 17-71 3-51 (68)
108 KOG1941 Acetylcholine receptor 78.9 1.1E+02 0.0024 33.8 16.6 166 9-181 126-299 (518)
109 KOG1941 Acetylcholine receptor 78.8 99 0.0021 34.1 16.1 133 415-551 85-227 (518)
110 smart00028 TPR Tetratricopepti 78.1 4.3 9.3E-05 24.9 3.9 30 452-481 3-32 (34)
111 PF12862 Apc5: Anaphase-promot 77.3 30 0.00066 29.6 10.0 67 418-484 8-75 (94)
112 COG3063 PilF Tfp pilus assembl 77.1 23 0.00049 36.4 10.4 99 39-155 30-128 (250)
113 PRK10866 outer membrane biogen 76.7 90 0.002 31.6 17.8 114 6-126 33-157 (243)
114 PF11207 DUF2989: Protein of u 76.6 7.9 0.00017 38.7 6.9 84 53-149 113-197 (203)
115 COG4235 Cytochrome c biogenesi 76.5 23 0.0005 37.3 10.6 107 431-551 142-248 (287)
116 COG2909 MalT ATP-dependent tra 75.7 1.5E+02 0.0033 35.8 17.8 184 339-551 453-680 (894)
117 KOG4555 TPR repeat-containing 74.9 53 0.0012 31.4 11.4 108 351-492 50-157 (175)
118 KOG0543 FKBP-type peptidyl-pro 74.9 43 0.00094 36.8 12.4 115 37-162 199-323 (397)
119 COG2976 Uncharacterized protei 73.4 76 0.0016 31.9 12.7 115 341-492 86-201 (207)
120 PF13371 TPR_9: Tetratricopept 72.6 13 0.00028 29.3 6.1 57 11-73 1-57 (73)
121 PRK15179 Vi polysaccharide bio 72.6 73 0.0016 37.5 14.5 84 421-515 133-220 (694)
122 PF13525 YfiO: Outer membrane 72.4 97 0.0021 30.1 13.4 133 415-552 12-163 (203)
123 COG2909 MalT ATP-dependent tra 72.3 1E+02 0.0023 37.1 15.4 164 8-184 383-551 (894)
124 PF13428 TPR_14: Tetratricopep 71.9 8.4 0.00018 28.2 4.5 31 6-36 2-32 (44)
125 KOG1126 DNA-binding cell divis 71.7 25 0.00053 40.7 10.0 149 14-183 430-606 (638)
126 PLN03098 LPA1 LOW PSII ACCUMUL 71.0 13 0.00029 41.3 7.6 68 450-517 75-146 (453)
127 KOG4626 O-linked N-acetylgluco 68.9 2.4E+02 0.0053 33.2 22.9 135 4-155 149-311 (966)
128 KOG1129 TPR repeat-containing 67.5 18 0.00039 39.0 7.4 115 421-552 337-451 (478)
129 PF00515 TPR_1: Tetratricopept 67.4 10 0.00022 25.7 3.8 32 5-36 1-32 (34)
130 KOG1174 Anaphase-promoting com 67.4 21 0.00046 39.5 8.1 33 449-481 470-502 (564)
131 PF13181 TPR_8: Tetratricopept 67.1 11 0.00024 25.4 4.0 32 130-161 1-32 (34)
132 COG5600 Transcription-associat 66.4 35 0.00077 37.3 9.4 107 364-482 143-252 (413)
133 KOG0543 FKBP-type peptidyl-pro 66.3 50 0.0011 36.3 10.6 108 353-483 217-324 (397)
134 COG3071 HemY Uncharacterized e 65.8 2.2E+02 0.0047 31.5 23.4 62 423-489 306-367 (400)
135 KOG0624 dsRNA-activated protei 63.9 2.3E+02 0.005 31.1 15.2 162 5-183 72-238 (504)
136 COG5010 TadD Flp pilus assembl 63.8 27 0.00058 36.2 7.6 88 50-155 106-193 (257)
137 KOG0495 HAT repeat protein [RN 63.6 90 0.0019 36.7 12.3 72 395-487 651-723 (913)
138 KOG4555 TPR repeat-containing 63.5 74 0.0016 30.4 9.8 98 442-551 35-136 (175)
139 PF13512 TPR_18: Tetratricopep 63.0 54 0.0012 31.1 9.0 91 449-545 9-99 (142)
140 PF07719 TPR_2: Tetratricopept 62.4 14 0.00031 24.6 3.8 30 6-35 2-31 (34)
141 KOG2003 TPR repeat-containing 61.9 1.4E+02 0.0031 33.7 13.0 153 354-517 500-687 (840)
142 KOG1125 TPR repeat-containing 61.8 36 0.00079 38.9 8.8 85 357-480 443-528 (579)
143 PRK11906 transcriptional regul 60.8 1.9E+02 0.004 32.6 13.9 87 448-550 336-427 (458)
144 PF03704 BTAD: Bacterial trans 60.5 1.1E+02 0.0023 27.6 10.5 107 355-477 17-123 (146)
145 COG4700 Uncharacterized protei 60.4 94 0.002 31.4 10.4 114 431-552 76-215 (251)
146 KOG1129 TPR repeat-containing 59.4 52 0.0011 35.7 8.9 148 358-516 304-461 (478)
147 PF13428 TPR_14: Tetratricopep 58.3 21 0.00045 26.1 4.3 32 452-483 3-34 (44)
148 PRK11906 transcriptional regul 58.0 1.8E+02 0.0039 32.7 13.2 66 419-492 349-414 (458)
149 KOG0548 Molecular co-chaperone 57.7 61 0.0013 36.8 9.6 93 351-481 365-457 (539)
150 KOG1586 Protein required for f 57.0 2E+02 0.0044 30.0 12.3 125 20-159 88-224 (288)
151 KOG4162 Predicted calmodulin-b 56.9 1.3E+02 0.0028 35.8 12.2 129 10-161 655-785 (799)
152 PF04190 DUF410: Protein of un 56.4 2.3E+02 0.005 29.0 13.1 76 427-504 69-158 (260)
153 KOG1463 26S proteasome regulat 55.5 1.8E+02 0.0038 31.8 12.1 146 10-166 92-245 (411)
154 COG2178 Predicted RNA-binding 55.5 85 0.0018 31.5 9.2 28 351-382 36-63 (204)
155 PF13176 TPR_7: Tetratricopept 55.2 10 0.00022 26.7 2.2 30 454-483 3-32 (36)
156 KOG4626 O-linked N-acetylgluco 55.0 93 0.002 36.4 10.5 129 11-158 224-382 (966)
157 PF13176 TPR_7: Tetratricopept 51.9 28 0.00061 24.4 4.0 32 134-165 3-34 (36)
158 PF10579 Rapsyn_N: Rapsyn N-te 51.4 42 0.00092 28.9 5.6 76 62-166 4-79 (80)
159 KOG4507 Uncharacterized conser 51.0 28 0.00061 40.1 5.7 92 14-117 616-707 (886)
160 KOG2002 TPR-containing nuclear 50.8 5.7E+02 0.012 31.5 29.2 124 41-181 232-355 (1018)
161 PF09986 DUF2225: Uncharacteri 50.6 69 0.0015 32.1 8.0 88 463-551 90-186 (214)
162 PF12569 NARP1: NMDA receptor- 49.4 4.5E+02 0.0098 30.0 19.8 146 6-168 195-343 (517)
163 COG4783 Putative Zn-dependent 49.0 1.7E+02 0.0037 33.1 11.2 122 418-552 316-447 (484)
164 PF07721 TPR_4: Tetratricopept 48.9 28 0.0006 22.8 3.3 24 451-474 2-25 (26)
165 PRK10866 outer membrane biogen 48.4 3.1E+02 0.0066 27.8 17.5 92 419-510 132-235 (243)
166 PF04733 Coatomer_E: Coatomer 47.9 64 0.0014 33.7 7.5 113 415-552 109-223 (290)
167 KOG1585 Protein required for f 47.8 3.6E+02 0.0078 28.4 16.4 133 10-194 36-173 (308)
168 PF08626 TRAPPC9-Trs120: Trans 46.6 5.2E+02 0.011 32.5 16.2 150 20-176 360-549 (1185)
169 KOG2471 TPR repeat-containing 45.0 1.1E+02 0.0023 35.0 8.9 94 358-463 297-391 (696)
170 KOG1156 N-terminal acetyltrans 44.8 5.6E+02 0.012 30.2 14.6 157 349-551 80-240 (700)
171 PF10579 Rapsyn_N: Rapsyn N-te 43.2 1.2E+02 0.0025 26.3 7.0 56 43-103 5-60 (80)
172 KOG4234 TPR repeat-containing 42.9 46 0.00099 33.9 5.2 60 456-516 101-166 (271)
173 KOG1125 TPR repeat-containing 40.6 3.7E+02 0.008 31.1 12.3 92 448-545 428-532 (579)
174 PF13374 TPR_10: Tetratricopep 39.3 61 0.0013 22.2 4.2 28 452-479 4-31 (42)
175 PRK14720 transcript cleavage f 39.3 7.3E+02 0.016 30.5 15.3 133 5-157 31-176 (906)
176 PF06552 TOM20_plant: Plant sp 39.1 1.5E+02 0.0033 29.4 8.0 63 4-72 31-100 (186)
177 KOG1173 Anaphase-promoting com 37.9 2.3E+02 0.0049 32.8 10.1 132 351-518 387-523 (611)
178 KOG2908 26S proteasome regulat 36.5 6.1E+02 0.013 27.8 16.8 176 335-546 67-249 (380)
179 KOG0553 TPR repeat-containing 36.3 1.2E+02 0.0026 32.2 7.4 92 9-115 78-178 (304)
180 PLN03081 pentatricopeptide (PP 34.4 7.9E+02 0.017 28.5 30.2 144 10-181 92-237 (697)
181 KOG0495 HAT repeat protein [RN 34.2 2.8E+02 0.006 32.9 10.2 106 55-181 661-766 (913)
182 PF05843 Suf: Suppressor of fo 33.5 3.2E+02 0.0069 28.1 10.0 84 407-504 40-124 (280)
183 COG3416 Uncharacterized protei 33.1 2.5E+02 0.0055 28.5 8.5 35 278-313 54-88 (233)
184 COG2956 Predicted N-acetylgluc 31.5 1.9E+02 0.0041 31.4 7.9 101 3-115 178-278 (389)
185 PLN03098 LPA1 LOW PSII ACCUMUL 30.6 2.2E+02 0.0047 32.1 8.5 66 5-74 75-141 (453)
186 PLN03218 maturation of RBCL 1; 30.4 1.2E+03 0.025 29.2 33.6 63 415-484 726-788 (1060)
187 KOG1155 Anaphase-promoting com 30.0 8.9E+02 0.019 27.7 14.8 89 449-540 261-359 (559)
188 KOG3364 Membrane protein invol 29.7 3.2E+02 0.0069 26.2 8.2 28 6-33 33-63 (149)
189 PF10876 DUF2669: Protein of u 29.4 79 0.0017 29.6 4.1 52 52-103 5-59 (133)
190 PF08631 SPO22: Meiosis protei 29.3 6.3E+02 0.014 25.8 17.6 119 341-481 33-152 (278)
191 KOG2796 Uncharacterized conser 29.0 2.7E+02 0.0059 29.6 8.3 113 353-497 221-333 (366)
192 COG2256 MGS1 ATPase related to 29.0 7.8E+02 0.017 27.6 12.2 142 54-202 198-355 (436)
193 PRK15331 chaperone protein Sic 28.7 4.3E+02 0.0093 25.8 9.2 94 76-183 27-120 (165)
194 PF07217 Het-C: Heterokaryon i 28.5 73 0.0016 36.7 4.5 42 310-355 72-113 (606)
195 PF13174 TPR_6: Tetratricopept 28.4 95 0.0021 20.2 3.5 28 7-34 2-29 (33)
196 KOG1127 TPR repeat-containing 28.4 1.3E+03 0.028 29.0 14.7 179 3-199 490-703 (1238)
197 TIGR00208 fliS flagellar biosy 27.8 4.7E+02 0.01 23.9 9.8 86 346-439 33-118 (124)
198 PRK04863 mukB cell division pr 27.7 1.3E+03 0.028 30.2 15.4 47 253-299 909-955 (1486)
199 KOG3081 Vesicle coat complex C 27.7 4.3E+02 0.0093 28.0 9.5 128 48-194 111-265 (299)
200 KOG0553 TPR repeat-containing 27.5 2.3E+02 0.0049 30.3 7.6 68 409-484 116-183 (304)
201 KOG0687 26S proteasome regulat 27.4 8.5E+02 0.018 26.7 12.2 68 418-487 151-218 (393)
202 KOG0687 26S proteasome regulat 27.3 8.5E+02 0.018 26.7 16.0 169 48-238 19-202 (393)
203 PF08900 DUF1845: Domain of un 27.3 3.5E+02 0.0076 27.2 8.7 72 341-442 117-198 (217)
204 PRK05685 fliS flagellar protei 27.1 5E+02 0.011 23.9 9.8 84 351-442 42-125 (132)
205 TIGR03761 ICE_PFL4669 integrat 26.9 3.5E+02 0.0076 27.4 8.6 74 343-446 117-201 (216)
206 PRK15331 chaperone protein Sic 26.8 3.3E+02 0.0071 26.5 8.1 72 415-494 78-149 (165)
207 TIGR01716 RGG_Cterm transcript 26.5 3.2E+02 0.0069 26.4 8.2 69 408-478 128-196 (220)
208 PF12968 DUF3856: Domain of Un 26.1 5.7E+02 0.012 24.2 9.3 80 343-441 54-133 (144)
209 COG1157 FliI Flagellar biosynt 26.0 2E+02 0.0042 32.2 7.1 69 157-248 341-409 (441)
210 COG3071 HemY Uncharacterized e 25.8 6.2E+02 0.014 28.0 10.7 133 8-167 266-398 (400)
211 KOG2688 Transcription-associat 25.7 95 0.0021 34.2 4.7 131 332-486 108-241 (394)
212 PF13374 TPR_10: Tetratricopep 25.4 1.2E+02 0.0025 20.8 3.7 29 5-33 2-30 (42)
213 KOG0548 Molecular co-chaperone 25.3 2.2E+02 0.0048 32.5 7.4 92 353-482 11-102 (539)
214 KOG2581 26S proteasome regulat 24.7 1E+03 0.022 26.8 13.2 142 13-162 134-279 (493)
215 KOG0550 Molecular chaperone (D 24.2 2.3E+02 0.005 31.7 7.2 125 413-549 174-306 (486)
216 PF10516 SHNi-TPR: SHNi-TPR; 23.6 1.6E+02 0.0034 21.7 4.0 28 452-479 3-30 (38)
217 COG3118 Thioredoxin domain-con 23.1 7E+02 0.015 26.7 10.2 30 332-361 47-77 (304)
218 PF12569 NARP1: NMDA receptor- 23.0 1.2E+03 0.025 26.7 18.2 123 415-552 201-327 (517)
219 KOG2581 26S proteasome regulat 22.7 1.1E+03 0.024 26.5 16.1 196 341-552 68-269 (493)
220 KOG1497 COP9 signalosome, subu 22.7 4E+02 0.0087 29.0 8.3 92 127-234 100-197 (399)
221 KOG3617 WD40 and TPR repeat-co 22.6 1.5E+03 0.033 28.0 19.9 340 87-471 968-1351(1416)
222 PF02259 FAT: FAT domain; Int 22.5 8.3E+02 0.018 24.8 14.1 67 3-72 144-211 (352)
223 KOG1155 Anaphase-promoting com 22.3 4.8E+02 0.01 29.8 9.2 90 7-102 434-523 (559)
224 PF11817 Foie-gras_1: Foie gra 22.0 7.7E+02 0.017 24.8 10.2 39 66-105 159-197 (247)
225 COG1729 Uncharacterized protei 22.0 5.9E+02 0.013 26.6 9.4 94 415-515 148-243 (262)
226 PF02259 FAT: FAT domain; Int 21.9 8.5E+02 0.018 24.8 15.6 34 348-381 33-66 (352)
227 PLN03077 Protein ECB2; Provisi 21.9 1.4E+03 0.03 27.2 29.2 85 415-512 632-716 (857)
228 KOG1130 Predicted G-alpha GTPa 21.0 3.1E+02 0.0068 30.9 7.3 162 13-182 103-329 (639)
229 PF11207 DUF2989: Protein of u 20.7 4E+02 0.0087 26.8 7.6 74 426-516 92-173 (203)
230 KOG0545 Aryl-hydrocarbon recep 20.6 1E+03 0.022 25.2 11.2 102 358-479 192-293 (329)
No 1
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.9e-114 Score=906.13 Aligned_cols=458 Identities=39% Similarity=0.637 Sum_probs=432.8
Q ss_pred hhHHHHHHHhHHHHHhhc--cHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCC
Q 008745 2 EAVAEGLWGLADYHENKG--EIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIP 79 (555)
Q Consensus 2 ~~~~~~Ll~lAe~fr~~~--~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~ 79 (555)
||||++||||||+|||++ +|++|||||+|+|+|++ |.++|||||||+|.+||.||||+++||+||||||+++++||
T Consensus 4 dAva~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~i--s~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip 81 (629)
T KOG2300|consen 4 DAVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQI--SFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIP 81 (629)
T ss_pred hHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccc
Confidence 599999999999999999 99999999999999999 99999999999999999999999999999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHcC-CCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHH
Q 008745 80 SCFELKCRTFSLLSQCYHLVG-AIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYV 158 (555)
Q Consensus 80 ~~~dlK~~a~sLLa~~y~~~~-~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~ 158 (555)
+|+|+||.++||||++|++.+ +.+++|+.|||+|+++++ .++|+|+|+||||++|.+++||.+|++.|..|+.
T Consensus 82 ~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~------~p~wsckllfQLaql~~idkD~~sA~elLavga~ 155 (629)
T KOG2300|consen 82 SFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS------VPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAE 155 (629)
T ss_pred cHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC------CchhhHHHHHHHHHHHhhhccchhHHHHHhcccc
Confidence 999999999999999999999 779999999999999998 8899999999999999999999999999999999
Q ss_pred HHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHH-HHhhhhhhhhh
Q 008745 159 CATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFY-RLRICDYKNAA 237 (555)
Q Consensus 159 ~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy-~lrvc~y~~a~ 237 (555)
.|...+.+|++++|.++++|+++|+| |..+|++++++|+++|+ ++++.+.++|+||||| +|++|+|...|
T Consensus 156 sAd~~~~~ylr~~ftls~~~ll~me~-d~~dV~~ll~~~~qi~~--------n~~sdk~~~E~LkvFyl~lql~yy~~~g 226 (629)
T KOG2300|consen 156 SADHICFPYLRMLFTLSMLMLLIMER-DDYDVEKLLQRCGQIWQ--------NISSDKTQKEMLKVFYLVLQLSYYLLPG 226 (629)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHh--------ccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999997 77999999999999999 8999999999999999 99999999999
Q ss_pred hhhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCcccccCc
Q 008745 238 HHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNA 317 (555)
Q Consensus 238 ~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~ 317 (555)
| |++ ++++| ||||+++++|+.|+|
T Consensus 227 q-~rt------------------------~k~~l-----------------kQLQ~siqtist~~~-------------- 250 (629)
T KOG2300|consen 227 Q-VRT------------------------VKPAL-----------------KQLQDSIQTISTSSR-------------- 250 (629)
T ss_pred c-hhh------------------------hHHHH-----------------HHHHHHHhccCCCCC--------------
Confidence 9 777 78999 999999999999886
Q ss_pred ccccCcccccCCCCCc-cccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhH
Q 008745 318 RQAWGDKLVLAPSPMD-GEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSA 396 (555)
Q Consensus 318 ~~~~~d~~~~~~~~l~-f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~ 396 (555)
..|+-.+|.|+++ |+||||+++|||||++||+|+||+|+|+||.||.+|++.+ .+|+.--|.
T Consensus 251 ---~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q----~eklkq~d~---------- 313 (629)
T KOG2300|consen 251 ---GHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQ----TEKLKQADL---------- 313 (629)
T ss_pred ---CccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHH----Hhhcccccc----------
Confidence 5565667766555 9999999999999999999999999999999999999999 455443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc--hhhhhhhHHHHHHHHHHHHhCCHHHHHHHHH
Q 008745 397 IWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT--ILQACESMIEMLRGQYAHSVGCYSEAAFHYV 474 (555)
Q Consensus 397 ~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~--ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~ 474 (555)
+.+++.|++|++|||+|+|++++|++++|.++|.+|++||.++|+ +++.++|+|||++|+|+||+|||++|++||.
T Consensus 314 --~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~ 391 (629)
T KOG2300|consen 314 --MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFI 391 (629)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHH
Confidence 557888899999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHhhcCCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhhc
Q 008745 475 EAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLAD 553 (555)
Q Consensus 475 ~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~~ 553 (555)
+|.|+|.+.+++++|++|+|++||+.++.+++++++|+|+|..+.+.+ |.+++++++||+|+.+|+|++++|||+..
T Consensus 392 ~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~s--sq~l~a~~~~v~glfaf~qn~lnEaK~~l 468 (629)
T KOG2300|consen 392 EATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLS--SQRLEASILYVYGLFAFKQNDLNEAKRFL 468 (629)
T ss_pred HHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcch--HHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999999999999999999999999999999999766544 45559999999999999999999999863
No 2
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=100.00 E-value=4.6e-66 Score=576.38 Aligned_cols=477 Identities=21% Similarity=0.258 Sum_probs=403.4
Q ss_pred HHHHHHHhHHHHHhhc------------------cHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHH
Q 008745 4 VAEGLWGLADYHENKG------------------EIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAK 65 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~------------------~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~Ak 65 (555)
.+..|+++||+|++.. -|++||||||++++. .+++|++||++|||||+||++||+|+++||
T Consensus 2 ~~~~ll~lAeey~~~A~~~~~~~~~~~~l~~Y~kLI~~ai~CL~~~~~~-~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae 80 (608)
T PF10345_consen 2 YVDLLLSLAEEYLEKAHSLATKVKSEEQLKQYYKLIATAIKCLEAVLKQ-FKLSPRQEARVRLRLASILLEETENLDLAE 80 (608)
T ss_pred hHHHHHHHHHHHHHHhHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5788999999999877 268889999999952 246999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCC
Q 008745 66 SHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGD 145 (555)
Q Consensus 66 thLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D 145 (555)
+||+||+.+.+. ++|+|+||+++++|+++|++.|+++ +++.|++.|+.+ +++++..|.|.|+|..+..+...+|
T Consensus 81 ~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~----~~~~~~~w~~~frll~~~l~~~~~d 154 (608)
T PF10345_consen 81 TYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS----ETYGHSAWYYAFRLLKIQLALQHKD 154 (608)
T ss_pred HHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH----hccCchhHHHHHHHHHHHHHHhccc
Confidence 999999999999 9999999999999999999999999 888888888855 5688999999999988887777799
Q ss_pred hHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHH
Q 008745 146 YQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIF 225 (555)
Q Consensus 146 ~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vf 225 (555)
+.+|+++|++|+.+|++.||++++++|.++++++||.. .+++++.+.+++|.+.++++ .+.+.. +.+.|++|
T Consensus 155 ~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~-~~~~d~~~~l~~~~~~~~~~------q~~~~~-~~~qL~~~ 226 (608)
T PF10345_consen 155 YNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRR-GSPDDVLELLQRAIAQARSL------QLDPSV-HIPQLKAL 226 (608)
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHhhc------ccCCCC-CcHHHHHH
Confidence 99999999999999999999999999999999999997 55677777788998888854 234555 67999999
Q ss_pred H-HHhhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccCC-C
Q 008745 226 Y-RLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSS-L 303 (555)
Q Consensus 226 y-~lrvc~y~~a~~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~~-~ 303 (555)
+ +|++|.+...|+ +++ +++.| ++||+.++++++.. |
T Consensus 227 ~lll~l~~~l~~~~-~~~------------------------~~~~L-----------------~~lq~~~~~~~~~~~w 264 (608)
T PF10345_consen 227 FLLLDLCCSLQQGD-VKN------------------------SKQKL-----------------KQLQQFLDEIKKSPSW 264 (608)
T ss_pred HHHHHHHHHHHcCC-HHH------------------------HHHHH-----------------HHHHHHHHHhhcCccC
Confidence 9 999999999998 554 44566 99999998777764 5
Q ss_pred C---CcCcCC-cccccCcccccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHH-
Q 008745 304 T---GKEFLE-PSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDAL- 378 (555)
Q Consensus 304 ~---~~~~~~-~~~~~~~~~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l- 378 (555)
. +++.++ +..-+ +.- .+..++.|.|||++++++|||++|+++++++|+.+||+||+++|+++|++.+
T Consensus 265 ~~~~~d~~i~l~~~~~-------~~~-~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~ 336 (608)
T PF10345_consen 265 PSWDEDGSIPLNIGEG-------SSN-SGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKI 336 (608)
T ss_pred CCcCCCeeEEeecccc-------ccc-CCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhc
Confidence 4 344433 11100 000 0111577999999999999999999999999999999999999999988865
Q ss_pred Hhcc-cCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc-hhhhhhhHHHHHH
Q 008745 379 LKLG-ITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT-ILQACESMIEMLR 456 (555)
Q Consensus 379 ~kl~-~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~-ll~~~~~~i~~l~ 456 (555)
+... ...++.+.. .+..|.. .|+..++++++++++++++|+.|.+.+.++++.+.++|+ +++.+.|.+|||.
T Consensus 337 ~~~~~~~~sl~~~~--~~~~~~~----~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~ 410 (608)
T PF10345_consen 337 KSPSAPSESLSEAS--ERIQWLR----YLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLL 410 (608)
T ss_pred cCCCCCCcCHHHHH--HhHHHHH----HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHH
Confidence 1111 111222222 2445533 347788888999999999999999999999999999986 8889999999999
Q ss_pred HHHHHHhCCHHHHHHHHH--------HHHhhcCChhHHHHHHHHHHHHHhhcCCccc----HHHHHHhhCcccccccccc
Q 008745 457 GQYAHSVGCYSEAAFHYV--------EAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 524 (555)
Q Consensus 457 G~ya~s~g~~~~A~~~F~--------~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s----~~~aL~li~P~~~~~~~~~ 524 (555)
|+|+|++||+++|+++|. .+.+....++++.++.+|+++++...+.+.. +..+++.|+|.|+.++++.
T Consensus 411 gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~ 490 (608)
T PF10345_consen 411 GLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSY 490 (608)
T ss_pred HHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHH
Confidence 999999999999999998 6778889999999999999999998766554 8999999999999988777
Q ss_pred chhHHHHHHHHHHHHHHhhcChhhhhhhc
Q 008745 525 GVREEASLHFAYGLLLMRQQDFQEARLAD 553 (555)
Q Consensus 525 ~~~~ka~~~fv~gl~~~~q~~~~eAr~~~ 553 (555)
.. .+..+++.++..+.+-.++|+|++.
T Consensus 491 ~~--~a~~~~~~~~~~~~~~~~ne~k~~l 517 (608)
T PF10345_consen 491 NR--TAYCLVLATYNTFEPFSSNEAKRHL 517 (608)
T ss_pred HH--HHHHHHHHHHhhCCccccHHHHHHH
Confidence 77 7788889999999999999999875
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.74 E-value=0.00022 Score=80.31 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=50.1
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHH
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQL 73 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~ 73 (555)
+..++..|..+...|++..|+.+++.+++..| ... .++..+|.+++. ..+.++|..+|+++..
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~--~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 84 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDP---NDA--EARFLLGKIYLA-LGDYAAAEKELRKALS 84 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCC---CCH--HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 45577788889999999999999999997654 233 467778888877 7899999999988753
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.67 E-value=0.00042 Score=78.04 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=72.7
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhh
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~ 86 (555)
....++..+...+++..|+.+++.+.+..+ +. +.+...+|.+++ ...+.++|+.+++++... -|.. .
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~---~~~~----~ 499 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQP---DN--ASLHNLLGAIYL-GKGDLAKAREAFEKALSI---EPDF----F 499 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CC--cHHHHHHHHHHH-hCCCHHHHHHHHHHHHhh---CCCc----H
Confidence 344566677777788888888888776543 22 234566666654 457778888888777432 1222 2
Q ss_pred hHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhH
Q 008745 87 RTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSG 156 (555)
Q Consensus 87 ~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g 156 (555)
.+...++++|...|....+...+.+.++..-. .......++.++...|++..|...+++.
T Consensus 500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTIDPK----------NLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555677777777666666665665553211 0112233445555555555555555543
No 5
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.64 E-value=0.00015 Score=84.28 Aligned_cols=382 Identities=13% Similarity=0.039 Sum_probs=210.8
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+.++..+|..++..+++..|+.+++.+++..| +..++ ++-+|.++. ...+.++|..+|+++... -|...+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P---~~~~a--~~~la~~l~-~~g~~~eA~~~l~~~l~~---~P~~~~- 118 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP---QNDDY--QRGLILTLA-DAGQYDEALVKAKQLVSG---APDKAN- 118 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHH--HHHHHHHHH-HCCCHHHHHHHHHHHHHh---CCCCHH-
Confidence 45688899999999999999999999998754 33444 346666664 788999999999998433 333323
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhC
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~ 164 (555)
...|+.+|...|....+-.++.++++..-. .. ...+.++.++...++...|+..++.....-..
T Consensus 119 ----~~~la~~l~~~g~~~~Al~~l~~al~~~P~------~~----~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~-- 182 (765)
T PRK10049 119 ----LLALAYVYKRAGRHWDELRAMTQALPRAPQ------TQ----QYPTEYVQALRNNRLSAPALGAIDDANLTPAE-- 182 (765)
T ss_pred ----HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CH----HHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH--
Confidence 667899999999887777777787775322 11 12233576777778888899888764431100
Q ss_pred ChhHHHHHHHHHHHHHhcccC----chhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHhhhhhhhhhhhh
Q 008745 165 YPDLQMFFATAILHVHLMQWD----DENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHV 240 (555)
Q Consensus 165 ~~~~~v~fals~~~~~L~~~~----~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a~~~v 240 (555)
...++..-.....-+.+.... .....++++.....++...+.... ..+ .+.++
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~-~~~------~~~~a---------------- 239 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD-ATA------DYQRA---------------- 239 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc-cch------HHHHH----------------
Confidence 001111111111111121100 112224444444444432111100 000 00000
Q ss_pred hhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCcccccCcccc
Q 008745 241 DNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQA 320 (555)
Q Consensus 241 ~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~~~~ 320 (555)
.++.+.-.+...+. .+-.+..++.++. .+ +
T Consensus 240 ----------------------~~d~l~~Ll~~g~~--------~eA~~~~~~ll~~-~~-~------------------ 269 (765)
T PRK10049 240 ----------------------RIDRLGALLARDRY--------KDVISEYQRLKAE-GQ-I------------------ 269 (765)
T ss_pred ----------------------HHHHHHHHHHhhhH--------HHHHHHHHHhhcc-CC-C------------------
Confidence 00001000100000 0000111121111 00 0
Q ss_pred cCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHH
Q 008745 321 WGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMA 400 (555)
Q Consensus 321 ~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~ 400 (555)
.|. ++..++ .......|.+++|.+.+++.++. .+... .. ......
T Consensus 270 ----------------~P~---~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~------~p~~~----~~----~~~~~~ 314 (765)
T PRK10049 270 ----------------IPP---WAQRWV--ASAYLKLHQPEKAQSILTELFYH------PETIA----DL----SDEELA 314 (765)
T ss_pred ----------------CCH---HHHHHH--HHHHHhcCCcHHHHHHHHHHhhc------CCCCC----CC----ChHHHH
Confidence 000 122222 33455678899999888765432 11100 00 000001
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccch---h-------hhhhhHHHHHHHHHHHHhCCHHHHH
Q 008745 401 GVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTI---L-------QACESMIEMLRGQYAHSVGCYSEAA 470 (555)
Q Consensus 401 ~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~l---l-------~~~~~~i~~l~G~ya~s~g~~~~A~ 470 (555)
. ++...+-++++++|.+.+.++.+. .|.- + ..-.....++.|.+....|++++|.
T Consensus 315 ~------------L~~a~~~~g~~~eA~~~l~~~~~~---~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 315 D------------LFYSLLESENYPGALTVTAHTINN---SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred H------------HHHHHHhcccHHHHHHHHHHHhhc---CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 122346679999999997777654 3321 1 1122456788999999999999999
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcccH----HHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcCh
Q 008745 471 FHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESS----SQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDF 546 (555)
Q Consensus 471 ~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s~----~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~ 546 (555)
..|..++....... -..+++|.++...|+++.. .++++ +.| + .. .+++..|+.++.++++
T Consensus 380 ~~l~~al~~~P~n~---~l~~~lA~l~~~~g~~~~A~~~l~~al~-l~P-----d-~~------~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 380 MRARELAYNAPGNQ---GLRIDYASVLQARGWPRAAENELKKAEV-LEP-----R-NI------NLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCC-----C-Ch------HHHHHHHHHHHHhCCH
Confidence 99999988776653 3667788899888887643 33333 334 2 22 3488999999999999
Q ss_pred hhhhh
Q 008745 547 QEARL 551 (555)
Q Consensus 547 ~eAr~ 551 (555)
++|..
T Consensus 444 ~~A~~ 448 (765)
T PRK10049 444 RQMDV 448 (765)
T ss_pred HHHHH
Confidence 99875
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.53 E-value=0.004 Score=75.76 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=111.0
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhccCC--------------CC-----------------C---hhHHHHHHH----
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQSHV--------------SF-----------------L---PIIEVKTRL---- 48 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~--------------~l-----------------~---P~~EA~~rL---- 48 (555)
..+.+|..+...++...|+..|+.+.+..+ .. | ...+|+..|
T Consensus 183 ~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~ 262 (1157)
T PRK11447 183 LRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQ 262 (1157)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 456788888888888899999988765321 00 0 011222222
Q ss_pred -----------HhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhh
Q 008745 49 -----------RISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTS 117 (555)
Q Consensus 49 -----------rla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~ 117 (555)
..|. .+....+.++|...++++..+ -|.. ..+...|+.+|.+.|....+...++++++..-
T Consensus 263 ~~~~dp~~~~~~~G~-~~~~~g~~~~A~~~l~~aL~~---~P~~----~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p 334 (1157)
T PRK11447 263 KQLADPAFRARAQGL-AAVDSGQGGKAIPELQQAVRA---NPKD----SEALGALGQAYSQQGDRARAVAQFEKALALDP 334 (1157)
T ss_pred HhccCcchHHHHHHH-HHHHCCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 1133 344578999999999998543 3333 35678999999999999888888889887542
Q ss_pred hhhcccccchh-------HHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHH
Q 008745 118 SASQDVAVKLW-------SCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSV 190 (555)
Q Consensus 118 ~~~e~~~~~~W-------~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v 190 (555)
. ......| .|...+.++.++...|++..|+..+++..+..- ++ ..+++.++.++... .++++.
T Consensus 335 ~---~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P--~~--~~a~~~Lg~~~~~~---g~~~eA 404 (1157)
T PRK11447 335 H---SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN--TD--SYAVLGLGDVAMAR---KDYAAA 404 (1157)
T ss_pred C---ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CC--HHHHHHHHHHHHHC---CCHHHH
Confidence 2 2122245 344556778889999999999999999666532 22 24555565555444 444544
Q ss_pred HHHHHHHH
Q 008745 191 LRSINQCD 198 (555)
Q Consensus 191 ~~~l~~~~ 198 (555)
.+...++.
T Consensus 405 ~~~y~~aL 412 (1157)
T PRK11447 405 ERYYQQAL 412 (1157)
T ss_pred HHHHHHHH
Confidence 44444443
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.49 E-value=0.00083 Score=81.58 Aligned_cols=384 Identities=14% Similarity=0.092 Sum_probs=205.6
Q ss_pred HHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhh
Q 008745 8 LWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCR 87 (555)
Q Consensus 8 Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~ 87 (555)
.+.+|.-+...+++..|+++++.+++..+ ++..-+ +-+-..+.....+.++|...|++. ++.-|... .
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p--~~~~la---~~y~~~~~~~~g~~~~A~~~L~~l---l~~~P~~~----~ 182 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAP--PELDLA---VEYWRLVAKLPAQRPEAINQLQRL---NADYPGNT----G 182 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCC--CChHHH---HHHHHHHhhCCccHHHHHHHHHHH---HHhCCCCH----H
Confidence 47778888999999999999999998765 433212 223334444557889999999987 34445544 3
Q ss_pred HHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhH----------------HH---------------HhH--
Q 008745 88 TFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWS----------------CN---------------FNS-- 134 (555)
Q Consensus 88 a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~----------------~~---------------f~f-- 134 (555)
++..||++|...|....+...+.+.++....... ....|. .. ..+
T Consensus 183 ~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~--aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~ 260 (1157)
T PRK11447 183 LRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA--AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAE 260 (1157)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHH--HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 5678999999989877676666766542110000 000110 00 001
Q ss_pred -------------HHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHH
Q 008745 135 -------------QLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVW 201 (555)
Q Consensus 135 -------------qlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~ 201 (555)
.++.++...|++..|+..+++.....- ++ ..+.+.+..++... .+.++....+.++..+
T Consensus 261 ~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P--~~--~~a~~~Lg~~~~~~---g~~~eA~~~l~~Al~~- 332 (1157)
T PRK11447 261 QQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP--KD--SEALGALGQAYSQQ---GDRARAVAQFEKALAL- 332 (1157)
T ss_pred HHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CC--HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHh-
Confidence 224555667888888888887555422 22 34556666555544 3344444443333322
Q ss_pred HhcCccccccccchhhhhHHHHH--HH-HHhhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCCh
Q 008745 202 ESIDPNRRGQCLGLLFYNELLHI--FY-RLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPS 278 (555)
Q Consensus 202 ~~i~~~~r~~~~g~~~~~e~l~v--fy-~lrvc~y~~a~~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~ 278 (555)
.++.. ......+++.. |+ .+.. | ...+...+.
T Consensus 333 ---~p~~~----~~~~~~~ll~~~~~~~~~~~------g------------------------------~~~~~~g~~-- 367 (1157)
T PRK11447 333 ---DPHSS----NRDKWESLLKVNRYWLLIQQ------G------------------------------DAALKANNL-- 367 (1157)
T ss_pred ---CCCcc----chhHHHHHHHhhhHHHHHHH------H------------------------------HHHHHCCCH--
Confidence 11110 00011122111 11 0000 0 001111111
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCcccccCcccccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCC
Q 008745 279 RERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKG 358 (555)
Q Consensus 279 ~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg 358 (555)
.+=.+.+++.++. +|+ + ..+ ++.-+......|
T Consensus 368 ------~eA~~~~~~Al~~--~P~--------------------~------------------~~a--~~~Lg~~~~~~g 399 (1157)
T PRK11447 368 ------AQAERLYQQARQV--DNT--------------------D------------------SYA--VLGLGDVAMARK 399 (1157)
T ss_pred ------HHHHHHHHHHHHh--CCC--------------------C------------------HHH--HHHHHHHHHHCC
Confidence 0011223333333 111 1 112 222245556789
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 008745 359 LFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWF 438 (555)
Q Consensus 359 ~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~ 438 (555)
.+++|+++++++++. .|+ . ...|.. + +.+. ...++++|.+.+.++...-
T Consensus 400 ~~~eA~~~y~~aL~~----------~p~-----~--~~a~~~-L------------~~l~-~~~~~~~A~~~l~~l~~~~ 448 (1157)
T PRK11447 400 DYAAAERYYQQALRM----------DPG-----N--TNAVRG-L------------ANLY-RQQSPEKALAFIASLSASQ 448 (1157)
T ss_pred CHHHHHHHHHHHHHh----------CCC-----C--HHHHHH-H------------HHHH-HhcCHHHHHHHHHhCCHHH
Confidence 999999999888875 222 0 112211 0 1111 1246788877655433221
Q ss_pred Hhc-cchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcccHHHHHHh---hC
Q 008745 439 IRF-PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDL---IG 514 (555)
Q Consensus 439 ~~~-P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s~~~aL~l---i~ 514 (555)
... ...............|......|++++|...|+.|++...+... +..+++.+|...|+.+.....++. ..
T Consensus 449 ~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~---~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 449 RRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW---LTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 110 01122233445566788888999999999999999987665432 456788899998886643333222 23
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 515 PVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 515 P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
|. . +.++|..|+.+..++++++|..+
T Consensus 526 P~------~------~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 526 PN------D------PEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred CC------C------HHHHHHHHHHHHhCCCHHHHHHH
Confidence 42 1 23467788888888999988664
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.35 E-value=0.0045 Score=69.99 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=67.2
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~ 82 (555)
+.+..+-.++..+...+++..||+|++-+++..| -| -....+|..++. ..+.++|...+++|..+ -|.+
T Consensus 125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p--~~----~~~~n~a~~~~~-l~~~~~Ai~~~~~al~l---~p~~- 193 (615)
T TIGR00990 125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP--DP----VYYSNRAACHNA-LGDWEKVVEDTTAALEL---DPDY- 193 (615)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--ch----HHHHHHHHHHHH-hCCHHHHHHHHHHHHHc---CCCC-
Confidence 3566788888889999999999999999998765 33 256777776655 47899999999998543 2332
Q ss_pred hhhhhHHHHHHHHHHHcCCCchH
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQ 105 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~ 105 (555)
..+..-++++|...|....+
T Consensus 194 ---~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 194 ---SKALNRRANAYDGLGKYADA 213 (615)
T ss_pred ---HHHHHHHHHHHHHcCCHHHH
Confidence 35677889999999976544
No 9
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.17 E-value=0.01 Score=69.48 Aligned_cols=372 Identities=15% Similarity=0.038 Sum_probs=210.0
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCC--cchh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIP--SCFE 83 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~--~~~d 83 (555)
..+...|......+.+.....+++++=.....-.|+ ..+..+.+ +..+.+.++|..+++.+.......+ .-.+
T Consensus 375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~----l~~~~a~~-~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~ 449 (903)
T PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPR----LVLLQAWL-AQSQHRYSEVNTLLARAEQELKDRNIELDGT 449 (903)
T ss_pred HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcc----hHHHHHHH-HHHCCCHHHHHHHHHHHHHhccccCcccchh
Confidence 334444555555556665555555431000000122 12233333 3466789999999998866544432 1235
Q ss_pred hhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhh
Q 008745 84 LKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEI 163 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~ 163 (555)
++.....+++.++...|....+....+++++... .+. ..........++.++...||+..|...++.....+++.
T Consensus 450 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~--~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~ 524 (903)
T PRK04841 450 LQAEFNALRAQVAINDGDPEEAERLAELALAELP---LTW--YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH 524 (903)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---Ccc--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 6777778899999999988777677677776421 111 11111223457778888999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHhhhhhhhhhhhhhhh
Q 008745 164 SYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNL 243 (555)
Q Consensus 164 ~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a~~~v~~l 243 (555)
|++...+......+.+++.+ -+ +
T Consensus 525 g~~~~~~~~~~~la~~~~~~-G~--------------------------------------------------------~ 547 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQ-GF--------------------------------------------------------L 547 (903)
T ss_pred cchHHHHHHHHHHHHHHHHC-CC--------------------------------------------------------H
Confidence 98876655444444444432 11 1
Q ss_pred HHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCcccccCcccccCc
Q 008745 244 DAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGD 323 (555)
Q Consensus 244 d~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~~~~~~d 323 (555)
+.+... +...+ +..+....+
T Consensus 548 ~~A~~~-----------------~~~al---------------------~~~~~~~~~---------------------- 567 (903)
T PRK04841 548 QAAYET-----------------QEKAF---------------------QLIEEQHLE---------------------- 567 (903)
T ss_pred HHHHHH-----------------HHHHH---------------------HHHHHhccc----------------------
Confidence 111110 00111 001110000
Q ss_pred ccccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHH
Q 008745 324 KLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVY 403 (555)
Q Consensus 324 ~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~y 403 (555)
. . ...+.++.+-+......|.+++|..++++++...+ ..+ +. +....+
T Consensus 568 -----~-------~---~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~----~~~--~~-----------~~~~~~ 615 (903)
T PRK04841 568 -----Q-------L---PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS----NYQ--PQ-----------QQLQCL 615 (903)
T ss_pred -----c-------c---cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh----ccC--ch-----------HHHHHH
Confidence 0 0 00011111223333445999999999998888732 111 11 000111
Q ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh
Q 008745 404 LMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (555)
Q Consensus 404 l~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~ 483 (555)
-..+.+.+.+|++++|.+.+.++.++....+... .....+..+...+....|+.+.|..............
T Consensus 616 --------~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~ 686 (903)
T PRK04841 616 --------AMLAKISLARGDLDNARRYLNRLENLLGNGRYHS-DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFAN 686 (903)
T ss_pred --------HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccH-hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCcc
Confidence 1236678889999999999999988766543111 1122233344455666899999888876654322111
Q ss_pred h-HHHHHHHHHHHHHhhcCCccc----HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 484 S-MQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 484 ~-~~~~~~lnlAi~yL~~g~~~s----~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
. .......+.+.+++..|+.+. +.++++.-.+ ....++.+-++...|..+..+|++.+|+.+
T Consensus 687 ~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~-------~g~~~~~a~~~~~la~a~~~~G~~~~A~~~ 753 (903)
T PRK04841 687 NHFLQGQWRNIARAQILLGQFDEAEIILEELNENARS-------LRLMSDLNRNLILLNQLYWQQGRKSEAQRV 753 (903)
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------hCchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 222334568888888887543 4444443211 222345778889999999999999999875
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.15 E-value=0.0038 Score=70.62 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008745 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (555)
Q Consensus 343 ~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~ 422 (555)
.+.++..-+.+....|.+++|.+++++++.. .|. . ...| + +++.+....+
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----------~P~-----~--~~~~-----~--------~la~~~~~~g 379 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIEL----------DPR-----V--TQSY-----I--------KRASMNLELG 379 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCC-----c--HHHH-----H--------HHHHHHHHCC
Confidence 3455666677777899999999999888764 222 0 1112 1 1244456689
Q ss_pred CHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCC
Q 008745 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (555)
Q Consensus 423 ~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~ 502 (555)
++++|.+.+.++.+. .|.- +.+++.+|.+....|++++|...|..++++..+.. .+..+++.+|...|+
T Consensus 380 ~~~eA~~~~~~al~~---~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~---~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 380 DPDKAEEDFDKALKL---NSED-----PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI---FSHIQLGVTQYKEGS 448 (615)
T ss_pred CHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH---HHHHHHHHHHHHCCC
Confidence 999999998887655 4442 45678899999999999999999999998765432 345678889988877
Q ss_pred ccc----HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhh
Q 008745 503 AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARL 551 (555)
Q Consensus 503 ~~s----~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~ 551 (555)
-+. +.+++. +.|. . .-+++..|..+..+|++++|..
T Consensus 449 ~~eA~~~~~~al~-~~P~------~------~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 449 IASSMATFRRCKK-NFPE------A------PDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHHHHHHHHHHH-hCCC------C------hHHHHHHHHHHHHccCHHHHHH
Confidence 543 344443 2332 1 2346778999999999999975
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.13 E-value=0.0088 Score=68.70 Aligned_cols=129 Identities=8% Similarity=-0.101 Sum_probs=93.5
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
.++.-.+-.+-.+|+...|...+++++...| -+ .+| .-.+|..+ -.+.+.++|...++++..+ -|..
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p--~~-~~~--l~~l~~~~-l~~g~~~~A~~~l~~~l~~---~P~~---- 109 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAK--NG-RDL--LRRWVISP-LASSQPDAVLQVVNKLLAV---NVCQ---- 109 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCC--Cc-hhH--HHHHhhhH-hhcCCHHHHHHHHHHHHHh---CCCC----
Confidence 4566677788888999999999999998765 22 222 33444333 3599999999999998543 2333
Q ss_pred hhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHH
Q 008745 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGY 157 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~ 157 (555)
..++..|+.+|...|....+...+.++++..- ...+ ....++.++...|+++.|+..++...
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P-------~~~~---a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAFS-------GNSQ---IFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CcHH---HHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 34678999999999999888788888877532 1122 33457888899999999999888543
No 12
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.92 E-value=0.035 Score=63.25 Aligned_cols=309 Identities=17% Similarity=0.209 Sum_probs=203.4
Q ss_pred hhhhhHHHHHHHHHHH-cCCCchHhHHHHHHHHHhhhhhcccccchhHHHHh--HHHHHHhhhcCChHHHHHHHhhHHHH
Q 008745 83 ELKCRTFSLLSQCYHL-VGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFN--SQLANAFIIEGDYQSSISALQSGYVC 159 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~-~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~--fqlA~~~~~~~D~~~A~~~L~~g~~~ 159 (555)
+.......=||++|.. +.....++..|.||+..+.+ +.+...+|. |.++.++-..+-.. |..+|++..+.
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~ 128 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIED 128 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHH
Confidence 6777777788999886 44568889999999999876 666666666 56666666555555 99999998888
Q ss_pred HhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHhhhhhhhhhhh
Q 008745 160 ATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHH 239 (555)
Q Consensus 160 A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a~~~ 239 (555)
....+.......|.+.++..++.. .|+..+-.
T Consensus 129 ~~~~~~~~w~~~frll~~~l~~~~-~d~~~Al~----------------------------------------------- 160 (608)
T PF10345_consen 129 SETYGHSAWYYAFRLLKIQLALQH-KDYNAALE----------------------------------------------- 160 (608)
T ss_pred HhccCchhHHHHHHHHHHHHHHhc-ccHHHHHH-----------------------------------------------
Confidence 888787778888888777777653 22111111
Q ss_pred hhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCcccccCccc
Q 008745 240 VDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQ 319 (555)
Q Consensus 240 v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~~~ 319 (555)
.| |.-.+. ..
T Consensus 161 ------------------------------~L--------------------~~~~~~-a~------------------- 170 (608)
T PF10345_consen 161 ------------------------------NL--------------------QSIAQL-AN------------------- 170 (608)
T ss_pred ------------------------------HH--------------------HHHHHH-hh-------------------
Confidence 11 000000 00
Q ss_pred ccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHH
Q 008745 320 AWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWM 399 (555)
Q Consensus 320 ~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~ 399 (555)
..+ ...+++++.++..+.....|..+++...++.+..+ ..+++..+++ . .+.+
T Consensus 171 ~~~----------------d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~----~~~~q~~~~~---~---~~qL- 223 (608)
T PF10345_consen 171 QRG----------------DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQ----ARSLQLDPSV---H---IPQL- 223 (608)
T ss_pred hcC----------------CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH----HhhcccCCCC---C---cHHH-
Confidence 011 12567777787777777777777777777666666 4444444442 1 1212
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccch-----------------------------h-----
Q 008745 400 AGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTI-----------------------------L----- 445 (555)
Q Consensus 400 ~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~l-----------------------------l----- 445 (555)
.+ ..++|+ ++|.+-.+++..+.+.++++.+.++..-.. +
T Consensus 224 -~~----~~lll~--l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 224 -KA----LFLLLD--LCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred -HH----HHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 11 234455 889999999999999999998886665111 1
Q ss_pred hhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh-----------------------HHHHHHHHHHHHHhhcCC
Q 008745 446 QACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-----------------------MQAMCHAYAAVSYFCIGD 502 (555)
Q Consensus 446 ~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~-----------------------~~~~~~lnlAi~yL~~g~ 502 (555)
..+-.+.+.+.|+-.+.-|..+.|..-|..+++++++-. ++..+..+.....+..++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 234567889999999999999999999998887764422 223455555555555566
Q ss_pred cccHHHHHHhhCcccccc-c-cccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 503 AESSSQAIDLIGPVYQMK-D-TINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 503 ~~s~~~aL~li~P~~~~~-~-~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
.....+.++.+...+... + -+..+ ..-.+|..|+-...-|+++.|+.+
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~--~~~~~yL~gl~~q~~g~l~~A~~~ 426 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESL--YPLLHYLLGLYYQSTGDLEAALYQ 426 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhh--hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555666665555443321 1 23444 567899999999999999999864
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.83 E-value=0.059 Score=56.33 Aligned_cols=126 Identities=15% Similarity=0.088 Sum_probs=79.6
Q ss_pred HHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHH
Q 008745 13 DYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLL 92 (555)
Q Consensus 13 e~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLL 92 (555)
-.+...+++..|+..++.+++..| .. +.++..+|.+++ ...+.++|..+++++.. ..+...+.+..+...|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p---~~--~~~~~~la~~~~-~~g~~~~A~~~~~~~l~---~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDP---ET--VELHLALGNLFR-RRGEVDRAIRIHQNLLS---RPDLTREQRLLALQEL 113 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCc---cc--HHHHHHHHHHHH-HcCcHHHHHHHHHHHhc---CCCCCHHHHHHHHHHH
Confidence 344566677888888888887644 22 344566666654 56677888888876632 2122224566777888
Q ss_pred HHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHH
Q 008745 93 SQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGY 157 (555)
Q Consensus 93 a~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~ 157 (555)
+.+|.+.|....+...+.++++... . .......++.++...|++..|++.++...
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~-------~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGD-------F---AEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCc-------c---hHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 8888888877666666666554311 0 11233457777777888888887777643
No 14
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.68 E-value=0.0013 Score=60.61 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=92.7
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 008745 418 ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 497 (555)
Q Consensus 418 ~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~y 497 (555)
....+++..+.+.+.++ ...+|... ......+.+|-.....|++++|...|+.++..+.+++++.++.+++|-++
T Consensus 21 ~~~~~~~~~~~~~~~~l---~~~~~~s~--ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQL---AKDYPSSP--YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHCCCHHHHHHHHHHH---HHHCCCCh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 44688888876654444 45677763 56777888899999999999999999999998889999999999999999
Q ss_pred hhcCCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 498 FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 498 L~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
+..|+.+. +++.++++ . .... ++.+....|-..+++|++.+|+..
T Consensus 96 ~~~~~~d~---Al~~L~~~-~----~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 96 LQQGQYDE---ALATLQQI-P----DEAF--KALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred HHcCCHHH---HHHHHHhc-c----Ccch--HHHHHHHHHHHHHHCCCHHHHHHH
Confidence 98776654 44444332 1 1223 556788999999999999999864
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.54 E-value=0.15 Score=53.23 Aligned_cols=141 Identities=11% Similarity=0.118 Sum_probs=102.3
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
......++..+...+++..|+..++.++.... .++...+.+...+|.+++ ...+.+.|...++++... - .-
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~La~~~~-~~g~~~~A~~~~~~~l~~---~----~~ 139 (389)
T PRK11788 69 VELHLALGNLFRRRGEVDRAIRIHQNLLSRPD-LTREQRLLALQELGQDYL-KAGLLDRAEELFLQLVDE---G----DF 139 (389)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcC---C----cc
Confidence 35678889999999999999999999998543 455555677888888865 567899999999887432 1 12
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHH
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~ 159 (555)
...+...|+.+|.+.|....+...+.+.++..- .. .......+...++.++...|++..|+..+++....
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 140 AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---DS--LRVEIAHFYCELAQQALARGDLDAARALLKKALAA 209 (389)
T ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---Cc--chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH
Confidence 346778899999999988766666666555321 11 01112334567888888899999999999986654
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.52 E-value=0.24 Score=57.09 Aligned_cols=122 Identities=9% Similarity=0.027 Sum_probs=82.5
Q ss_pred HHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHH
Q 008745 13 DYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLL 92 (555)
Q Consensus 13 e~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLL 92 (555)
--....++...|+..++.++...| ... .+++.+|.++.. ..+.++|..+|+++..+ -|.. -.++..+
T Consensus 84 ~~~l~~g~~~~A~~~l~~~l~~~P---~~~--~a~~~la~~l~~-~g~~~~Ai~~l~~Al~l---~P~~----~~a~~~l 150 (656)
T PRK15174 84 ISPLASSQPDAVLQVVNKLLAVNV---CQP--EDVLLVASVLLK-SKQYATVADLAEQAWLA---FSGN----SQIFALH 150 (656)
T ss_pred hhHhhcCCHHHHHHHHHHHHHhCC---CCh--HHHHHHHHHHHH-cCCHHHHHHHHHHHHHh---CCCc----HHHHHHH
Confidence 334568899999999999998765 222 346777877655 57899999999999543 2222 2357788
Q ss_pred HHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHH
Q 008745 93 SQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYV 158 (555)
Q Consensus 93 a~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~ 158 (555)
+++|...|....+..++++.+...-. .....+.+ + .+...||+..|+..++....
T Consensus 151 a~~l~~~g~~~eA~~~~~~~~~~~P~------~~~a~~~~----~-~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 151 LRTLVLMDKELQAISLARTQAQEVPP------RGDMIATC----L-SFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHCCChHHHHHHHHHHHHhCCC------CHHHHHHH----H-HHHHcCCHHHHHHHHHHHHh
Confidence 99999999887666665655443221 12222221 1 25668999999998887543
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.43 E-value=0.45 Score=55.94 Aligned_cols=150 Identities=9% Similarity=-0.014 Sum_probs=105.0
Q ss_pred hHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHH
Q 008745 11 LADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFS 90 (555)
Q Consensus 11 lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~s 90 (555)
++.-....+++..|...++.++...+.-.+...+.+..-+|.+ +....+.++|+..++++.......+... ....+..
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~-~~~~G~~~~A~~~~~~al~~~~~~g~~~-~~~~~~~ 535 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV-HHCKGELARALAMMQQTEQMARQHDVYH-YALWSLL 535 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHhhhcchH-HHHHHHH
Confidence 4445556778999999999988632211233345555556665 4567899999999999987776654333 3344667
Q ss_pred HHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhC
Q 008745 91 LLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (555)
Q Consensus 91 LLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~ 164 (555)
.++.++...|....+...+.++++.+... +.+...........++.++...||++.|...++.+...+...+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 607 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQ--HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ 607 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHh--ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC
Confidence 88999999999988888889999987642 1111111111223568888889999999999999988887655
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.33 E-value=0.38 Score=56.33 Aligned_cols=91 Identities=9% Similarity=-0.020 Sum_probs=65.6
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
.+..++|..+...++...|+..|+.+++..| ...+ +..+|.++. .+.+..+|...++++.. .-|...+
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P---~~~~---~~~la~~l~-~~g~~~~Al~~l~~al~---~~P~~~~-- 151 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSGAP---DKAN---LLALAYVYK-RAGRHWDELRAMTQALP---RAPQTQQ-- 151 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHH---HHHHHHHHH-HCCCHHHHHHHHHHHHH---hCCCCHH--
Confidence 4567888888899999999999999998743 4444 666777665 67889999999999944 3444333
Q ss_pred hhHHHHHHHHHHHcCCCchHhHHHH
Q 008745 86 CRTFSLLSQCYHLVGAIPPQKLILY 110 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~~~~k~~L~ 110 (555)
+...++.++.+.|....+-.++.
T Consensus 152 --~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 152 --YPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred --HHHHHHHHHHHCCChHHHHHHHH
Confidence 44567888888776654433333
No 19
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.27 E-value=0.3 Score=50.46 Aligned_cols=143 Identities=17% Similarity=0.085 Sum_probs=86.5
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
.+.+.+++|-.+...++...+.+....+.+-.+ . ....+-.+-+-.++...++|.++|...++++.. ..|+...
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~---~~P~~~~ 78 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALA--A-RATERERAHVEALSAWIAGDLPKALALLEQLLD---DYPRDLL 78 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc--c-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHH
Confidence 467888999888888877777888777776544 2 223333344566777888999999999999843 3444331
Q ss_pred hhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhh
Q 008745 84 LKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEI 163 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~ 163 (555)
+... +..+...|..........+.++... ...+ ..| ..+..++.++...|++..|...++.....+..+
T Consensus 79 ----a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~-~~~--~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~ 147 (355)
T cd05804 79 ----ALKL-HLGAFGLGDFSGMRDHVARVLPLWA---PENP-DYW--YLLGMLAFGLEEAGQYDRAEEAARRALELNPDD 147 (355)
T ss_pred ----HHHH-hHHHHHhcccccCchhHHHHHhccC---cCCC-CcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2221 2233333322111122344444311 1111 122 344467788899999999999999988776443
No 20
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.20 E-value=0.0035 Score=57.69 Aligned_cols=98 Identities=24% Similarity=0.271 Sum_probs=81.0
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
..+.|.+|..+-..|++..|+.=|+.++...+ .|.+...++||+|++++ ...+.++|.++|+.. + -...
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~--d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~~-------~-~~~~ 116 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAP--DPELKPLARLRLARILL-QQGQYDEALATLQQI-------P-DEAF 116 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHhc-------c-Ccch
Confidence 56788899999999999999999999999877 88999999999999998 556788999999552 1 1234
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHH
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKAL 113 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i 113 (555)
+-.+..+++++|...|.+..++.+-+++|
T Consensus 117 ~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 117 KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 56678899999999999987777666553
No 21
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.19 E-value=0.48 Score=51.14 Aligned_cols=121 Identities=9% Similarity=0.047 Sum_probs=79.4
Q ss_pred HHHHHhhHHHHh-hcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhccc
Q 008745 45 KTRLRISTLLLK-HTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDV 123 (555)
Q Consensus 45 ~~rLrla~lL~e-~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~ 123 (555)
|.+-.+.+-++. ...|...|+.+++++.... +-..-.+-+.|+.+++.|....+...+.++.+..-.
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~-------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~----- 150 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHA-------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN----- 150 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-----
Confidence 444444444443 4569999999998874331 112344557899999999888777777776553211
Q ss_pred ccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccC
Q 008745 124 AVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWD 185 (555)
Q Consensus 124 ~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~ 185 (555)
-.-......|.+....||++.|.+.++.-.+.+ =++| .++..+..+++..-+|+
T Consensus 151 ----~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~--~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 151 ----DNILVEIARTRILLAQNELHAARHGVDKLLEMA--PRHK--EVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred ----CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH--HHHHHHHHHHHHHhhHH
Confidence 111234456899999999999999988755543 2233 56778888887776543
No 22
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.12 E-value=0.023 Score=58.37 Aligned_cols=185 Identities=13% Similarity=0.098 Sum_probs=122.2
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCC-hhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcc
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFL-PIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSC 81 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~-P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~ 81 (555)
+.+...-.-|..|+..++...|..|++-+.....++- |.--|++-.. |..++..+ |.++|...|++|..+....+++
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~-Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEE-AANCYKKG-DPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHH-HHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence 4566666778899999999999999998875333234 4444555555 55555666 9999999999999988887665
Q ss_pred hhhhhhHHHHHHHHHHHc-CCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHH
Q 008745 82 FELKCRTFSLLSQCYHLV-GAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA 160 (555)
Q Consensus 82 ~dlK~~a~sLLa~~y~~~-~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A 160 (555)
.. ==....-+|++|... |....+.....+|++.-.. ++ .+...-..+.+.|.++...++|..|++.++......
T Consensus 111 ~~-aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~--e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 111 SQ-AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ--EG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HH-HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH--TT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--CC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 52 234455788999888 6666666666788887653 23 456777888899999999999999999999877655
Q ss_pred hhhCCh--hH-HHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 008745 161 TEISYP--DL-QMFFATAILHVHLMQWDDENSVLRSINQC 197 (555)
Q Consensus 161 ~~~~~~--~~-~v~fals~~~~~L~~~~~~~~v~~~l~~~ 197 (555)
.+++.. .+ +.+|.. .+++|.. .|+-....++++.
T Consensus 186 l~~~l~~~~~~~~~l~a--~l~~L~~-~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 186 LENNLLKYSAKEYFLKA--ILCHLAM-GDYVAARKALERY 222 (282)
T ss_dssp CCHCTTGHHHHHHHHHH--HHHHHHT-T-HHHHHHHHHHH
T ss_pred hcccccchhHHHHHHHH--HHHHHHc-CCHHHHHHHHHHH
Confidence 444432 23 233444 3445543 4554454554433
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.72 Score=54.69 Aligned_cols=377 Identities=16% Similarity=0.169 Sum_probs=211.6
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhc---CChHHHHHHHHHHHHHHhcCCcch
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHT---HNVNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T---~N~~~AkthLEka~~l~k~i~~~~ 82 (555)
..++||+.--...|++..++.|+|.|++..|+.+-.+-+ ||.+..+.. +-.+.|..|+.++.. .-
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i-----LG~Lya~~~~~~~~~d~a~~~l~K~~~---~~---- 410 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI-----LGCLYAHSAKKQEKRDKASNVLGKVLE---QT---- 410 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH-----HHhHHHhhhhhhHHHHHHHHHHHHHHh---cc----
Confidence 357888888899999999999999999987655555444 344444442 345788888888732 21
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHh-
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCAT- 161 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~- 161 (555)
-.=.+++-.||++|.+.++++. -.++.++++....-. ....+-|..+ +|..|..-|++..|.+++......+.
T Consensus 411 ~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~-~~ip~E~LNN----vaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKG-KQIPPEVLNN----VASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcC-CCCCHHHHHh----HHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 2346789999999999999987 668899998765321 2233466554 67888888999999999887666643
Q ss_pred ----hhC-ChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHhhhhhhhh
Q 008745 162 ----EIS-YPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNA 236 (555)
Q Consensus 162 ----~~~-~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a 236 (555)
..| ++.+-.-+.++++.-++-..+. .+.+ =..++. -++| |...+|+.- |--..-
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~---A~e~---Yk~Ilk--------ehp~--YId~ylRl~-----~ma~~k 543 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEV---AEEM---YKSILK--------EHPG--YIDAYLRLG-----CMARDK 543 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhH---HHHH---HHHHHH--------HCch--hHHHHHHhh-----HHHHhc
Confidence 121 3444457788888777743221 1111 112222 3333 123322211 211111
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCcccccC
Q 008745 237 AHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGN 316 (555)
Q Consensus 237 ~~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~ 316 (555)
+. +-++ -..++..|...+-++..++=+- -+.-.- ..|. +
T Consensus 544 ~~----~~ea-----------------~~~lk~~l~~d~~np~arsl~G----~~~l~k-----~~~~-----------~ 582 (1018)
T KOG2002|consen 544 NN----LYEA-----------------SLLLKDALNIDSSNPNARSLLG----NLHLKK-----SEWK-----------P 582 (1018)
T ss_pred cC----cHHH-----------------HHHHHHHHhcccCCcHHHHHHH----HHHHhh-----hhhc-----------c
Confidence 11 1111 1112223322222222221111 000000 0010 0
Q ss_pred cccccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCC---CChHHHHHHHHHHHHHHHHHHHhcccCcccccccch
Q 008745 317 ARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPK---GLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQ 393 (555)
Q Consensus 317 ~~~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~k---g~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~ 393 (555)
++... +.++. .=+.+++.|+|+=+=+++...-. -+-+|+.|++++|+..-+.. |..-|
T Consensus 583 a~k~f--~~i~~------~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv---L~~dp-------- 643 (1018)
T KOG2002|consen 583 AKKKF--ETILK------KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV---LRNDP-------- 643 (1018)
T ss_pred cccHH--HHHHh------hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH---HhcCc--------
Confidence 00000 00000 01122688888888876554322 22267889999999874332 22222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHH
Q 008745 394 HSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHY 473 (555)
Q Consensus 394 ~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F 473 (555)
+-+|.+ .-+..|-.-.++|..|...++|+++-...+|+.. -=+|+++.-.|.|-.|.--|
T Consensus 644 -kN~yAA-----------NGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~--------lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 644 -KNMYAA-----------NGIGIVLAEKGRFSEARDIFSQVREATSDFEDVW--------LNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred -chhhhc-----------cchhhhhhhccCchHHHHHHHHHHHHHhhCCcee--------eeHHHHHHHHHHHHHHHHHH
Confidence 445533 2345566678999999999999999988776531 12466777777777888888
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHhhcCC
Q 008745 474 VEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (555)
Q Consensus 474 ~~A~k~t~s~~~~~~~~lnlAi~yL~~g~ 502 (555)
..+++... +..+.=.-.++|-+|...|.
T Consensus 704 e~~lkkf~-~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 704 ENCLKKFY-KKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred HHHHHHhc-ccCCHHHHHHHHHHHHHhhh
Confidence 88877665 22222233446666666444
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.96 E-value=0.095 Score=48.84 Aligned_cols=167 Identities=11% Similarity=0.040 Sum_probs=113.5
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
.+.....+|..+...++...|+.+++.+++..| .. +.+...+|.+ +..+.+.++|...++++..+. +...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~--~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~---~~~~- 99 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDP---DD--YLAYLALALY-YQQLGELEKAEDSFRRALTLN---PNNG- 99 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---cc--HHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhC---CCCH-
Confidence 466778889999999999999999999987654 12 3455566655 456789999999999996542 2222
Q ss_pred hhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhh
Q 008745 84 LKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEI 163 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~ 163 (555)
.+...++.+|...|....+...+.++++.... + . .....+.++.++...||+..|...++++......
T Consensus 100 ---~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 167 (234)
T TIGR02521 100 ---DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY-----P-Q--PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ- 167 (234)
T ss_pred ---HHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-----c-c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 35677899999999887777777777763211 1 0 1123345788888999999999999997765322
Q ss_pred CChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHH
Q 008745 164 SYPDLQMFFATAILHVHLMQWDDENSVLRSINQCD 198 (555)
Q Consensus 164 ~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~ 198 (555)
.....+.++..+... .+.+.....+.++.
T Consensus 168 ---~~~~~~~la~~~~~~---~~~~~A~~~~~~~~ 196 (234)
T TIGR02521 168 ---RPESLLELAELYYLR---GQYKDARAYLERYQ 196 (234)
T ss_pred ---ChHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Confidence 234555566555544 44455444444443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.96 E-value=1.4 Score=52.42 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=85.8
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc----------hhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 008745 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPT----------ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (555)
Q Consensus 412 E~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~----------ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~ 481 (555)
+-+++..+=.+++++|.+-+.++.+ ..|. ....--.....+++.+....|++++|+.++...++.+.
T Consensus 371 ~~L~yA~ld~e~~~~A~~~l~~~~~---~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP 447 (822)
T PRK14574 371 DDLYYSLNESEQLDKAYQFAVNYSE---QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP 447 (822)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHh---cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3457777889999999999999886 2331 11112236777888999999999999999999887775
Q ss_pred Chh-HHHHHHHHHHHHHhhcCCcccH---HHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhh
Q 008745 482 SKS-MQAMCHAYAAVSYFCIGDAESS---SQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARL 551 (555)
Q Consensus 482 s~~-~~~~~~lnlAi~yL~~g~~~s~---~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~ 551 (555)
... ++ ++.|-++...|.|... -+..+.+.|- .. .+.+..|..++.++++++|+.
T Consensus 448 ~n~~l~----~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~------~~------~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 448 ANQNLR----IALASIYLARDLPRKAEQELKAVESLAPR------SL------ILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred CCHHHH----HHHHHHHHhcCCHHHHHHHHHHHhhhCCc------cH------HHHHHHHHHHHhhhhHHHHHH
Confidence 543 33 2566777676776532 2333444553 23 347899999999999999964
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.89 E-value=0.074 Score=49.61 Aligned_cols=27 Identities=4% Similarity=0.114 Sum_probs=18.6
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHH
Q 008745 347 DLMVVILGRPKGLFKECMQRIQSGMQT 373 (555)
Q Consensus 347 yllsvi~~~~kg~~~kA~Kyl~~gl~~ 373 (555)
+..-+......|.+++|..+++++++.
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~ 60 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEH 60 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 333455556678889998888877654
No 27
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.73 E-value=0.18 Score=49.34 Aligned_cols=171 Identities=13% Similarity=0.068 Sum_probs=110.6
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+..++.++..+...++...|+..++.+++..| ....-..+++.+|.+++. ..+.++|...++++... -|+-.++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~a~~~la~~~~~-~~~~~~A~~~~~~~l~~---~p~~~~~ 106 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYP--FSPYAEQAQLDLAYAYYK-SGDYAEAIAAADRFIRL---HPNHPDA 106 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH---CcCCCch
Confidence 56788999999999999999999999998766 322334568888887776 58999999999998543 3333333
Q ss_pred hhhHHHHHHHHHHHcCCCch-HhHHHHHHHHHhhhhhcccccc--hhHHHH------------hHHHHHHhhhcCChHHH
Q 008745 85 KCRTFSLLSQCYHLVGAIPP-QKLILYKALDLTSSASQDVAVK--LWSCNF------------NSQLANAFIIEGDYQSS 149 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~-~k~~L~k~i~~s~~~~e~~~~~--~W~~~f------------~fqlA~~~~~~~D~~~A 149 (555)
. .+...++.+|.+...... ...-..++++.-....+.+|.. .|...+ .+.+|..+...||+..|
T Consensus 107 ~-~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 185 (235)
T TIGR03302 107 D-YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAA 185 (235)
T ss_pred H-HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3 267788999987621100 0001123333332222223222 222111 13567778888999999
Q ss_pred HHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcc
Q 008745 150 ISALQSGYVCATEISYPDLQMFFATAILHVHLMQ 183 (555)
Q Consensus 150 ~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~ 183 (555)
+..++...+.... +....++.+.+..++..+-+
T Consensus 186 ~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 186 INRFETVVENYPD-TPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCC
Confidence 9999985543211 23457889999999998865
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.36 E-value=0.073 Score=53.86 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=77.7
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 008745 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (555)
Q Consensus 345 Lvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~ 424 (555)
-+|++-+......|..++|.+.++++++. .|. +..++ ...+.+-+-.++.
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~----------~P~-------~~~~~-------------~~l~~~li~~~~~ 196 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALEL----------DPD-------DPDAR-------------NALAWLLIDMGDY 196 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----------TT--------HHHH-------------HHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCC-------CHHHH-------------HHHHHHHHHCCCh
Confidence 45666677778899999999999999887 222 01122 1123445678899
Q ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcc
Q 008745 425 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 504 (555)
Q Consensus 425 ~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~ 504 (555)
+++.+.++.........|.+ ....|.-...+|++++|...|..+++.-.+...+ .++.|-++...|..+
T Consensus 197 ~~~~~~l~~~~~~~~~~~~~--------~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~---~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 197 DEAREALKRLLKAAPDDPDL--------WDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW---LLAYADALEQAGRKD 265 (280)
T ss_dssp HHHHHHHHHHHHH-HTSCCH--------CHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH---HHHHHHHHT------
T ss_pred HHHHHHHHHHHHHCcCHHHH--------HHHHHHHhcccccccccccccccccccccccccc---ccccccccccccccc
Confidence 99888888888777666664 3456888889999999999999998865544433 234556666666654
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=96.26 E-value=0.13 Score=57.93 Aligned_cols=115 Identities=12% Similarity=0.008 Sum_probs=75.0
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlA 494 (555)
..+....+++++|.+.+.++.+. .|.- +..++..|......|++++|..+|..|+++........ .+.+
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l---~P~~-----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~---~~~~ 413 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLL---SPIS-----ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG---ITKL 413 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH---HHHH
Confidence 44556679999999887777654 4553 33578889999999999999999999999877654322 1222
Q ss_pred HHHhhcCCccc----HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 495 VSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 495 i~yL~~g~~~s----~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
.++...|+.+. +.++++...|. . ..+++..|..+..+|+++||+..
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~------~------~~~~~~la~~l~~~G~~~eA~~~ 463 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQD------N------PILLSMQVMFLSLKGKHELARKL 463 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhcccc------C------HHHHHHHHHHHHhCCCHHHHHHH
Confidence 23334466432 22233222231 1 12356677788889999999864
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.25 E-value=2.2 Score=45.96 Aligned_cols=84 Identities=14% Similarity=0.094 Sum_probs=59.0
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 008745 418 ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 497 (555)
Q Consensus 418 ~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~y 497 (555)
++-.++++.+ +..+.+|..++|.- +.++...|..+...|+++.|..+|..+++...+... . +.++.++
T Consensus 304 ~l~~~~~~~a---l~~~e~~lk~~P~~-----~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~--~--~~La~~~ 371 (398)
T PRK10747 304 RLKTNNPEQL---EKVLRQQIKQHGDT-----PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD--Y--AWLADAL 371 (398)
T ss_pred hccCCChHHH---HHHHHHHHhhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--H--HHHHHHH
Confidence 4445777776 55567788888875 568899999999999999999999999976544432 2 2345555
Q ss_pred hhcCCccc----HHHHHHhh
Q 008745 498 FCIGDAES----SSQAIDLI 513 (555)
Q Consensus 498 L~~g~~~s----~~~aL~li 513 (555)
-..|+++. ..+.|.++
T Consensus 372 ~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 372 DRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHcCCHHHHHHHHHHHHhhh
Confidence 56566542 55566554
No 31
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.21 E-value=0.34 Score=47.34 Aligned_cols=169 Identities=14% Similarity=-0.009 Sum_probs=103.1
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Q 008745 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (555)
Q Consensus 346 vyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~ 425 (555)
+++-.+......|.+++|.+.+++.++. .|. . -|....+ -+++.+....++|+
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~----------~p~--------~-~~~~~a~--------~~la~~~~~~~~~~ 87 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESR----------YPF--------S-PYAEQAQ--------LDLAYAYYKSGDYA 87 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCC--------c-hhHHHHH--------HHHHHHHHhcCCHH
Confidence 4455566677788888888877666543 121 0 0111111 11244556679999
Q ss_pred HHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHh--------CCHHHHHHHHHHHHhhcCChh--HHHHH------
Q 008745 426 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV--------GCYSEAAFHYVEAAKITESKS--MQAMC------ 489 (555)
Q Consensus 426 ~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~--------g~~~~A~~~F~~A~k~t~s~~--~~~~~------ 489 (555)
+|...+.++.+..-..|.. ...+|..|...... |+++.|...|+.+++.-.+.. ..++.
T Consensus 88 ~A~~~~~~~l~~~p~~~~~-----~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~ 162 (235)
T TIGR03302 88 EAIAAADRFIRLHPNHPDA-----DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR 162 (235)
T ss_pred HHHHHHHHHHHHCcCCCch-----HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH
Confidence 9999988887665555543 23456667666554 889999999999987665543 22221
Q ss_pred ------HHHHHHHHhhcCCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 490 ------HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 490 ------~lnlAi~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
.++.|..|+..|+.+. +++............ .- .+-++|..|......|++.||...
T Consensus 163 ~~~~~~~~~~a~~~~~~g~~~~---A~~~~~~al~~~p~~-~~--~~~a~~~l~~~~~~lg~~~~A~~~ 225 (235)
T TIGR03302 163 NRLAGKELYVARFYLKRGAYVA---AINRFETVVENYPDT-PA--TEEALARLVEAYLKLGLKDLAQDA 225 (235)
T ss_pred HHHHHHHHHHHHHHHHcCChHH---HHHHHHHHHHHCCCC-cc--hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2366778888777553 222222211111111 11 356789999999999999999753
No 32
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.11 E-value=0.061 Score=50.46 Aligned_cols=98 Identities=20% Similarity=0.162 Sum_probs=74.5
Q ss_pred hhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCccc----HHHHHHhhCcccccccc
Q 008745 447 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 522 (555)
Q Consensus 447 ~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s----~~~aL~li~P~~~~~~~ 522 (555)
.-....++..|...+..|++++|...|..|+....++.....+-.|++++|...|+.+. +.+++. +.|.+
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~-~~~~~----- 105 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE-RNPFL----- 105 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCc-----
Confidence 34677889999999999999999999999998876655555677889999999888653 455554 35542
Q ss_pred ccchhHHHHHHHHHHHHHHhhcChhhhh
Q 008745 523 INGVREEASLHFAYGLLLMRQQDFQEAR 550 (555)
Q Consensus 523 ~~~~~~ka~~~fv~gl~~~~q~~~~eAr 550 (555)
..+....+.+++..|-..+..|++++|.
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~ 133 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAE 133 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHH
Confidence 2223346777888888888999988774
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.92 E-value=5.5 Score=47.53 Aligned_cols=98 Identities=9% Similarity=0.071 Sum_probs=69.5
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 008745 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (555)
Q Consensus 345 Lvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~ 424 (555)
=.+.+-+.+..-.|..++|++.+++.+.. .|+ | .-++ + .++-+...|+.+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~----------aP~----n---~~l~---------~----~~A~v~~~Rg~p 466 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSST----------APA----N---QNLR---------I----ALASIYLARDLP 466 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCC----C---HHHH---------H----HHHHHHHhcCCH
Confidence 44555667777889999999888776554 343 1 1111 1 237788999999
Q ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 008745 425 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 480 (555)
Q Consensus 425 ~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t 480 (555)
..|.+.++....+ .|+- ..++.-.|..++..|++++|+..-...+...
T Consensus 467 ~~A~~~~k~a~~l---~P~~-----~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 467 RKAEQELKAVESL---APRS-----LILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHhhh---CCcc-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999998555544 5654 3567788999999999999998887665433
No 34
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.77 E-value=0.49 Score=54.81 Aligned_cols=129 Identities=16% Similarity=0.066 Sum_probs=83.6
Q ss_pred HHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCC----chHhHHHHHHHHHhhhhhccc
Q 008745 48 LRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAI----PPQKLILYKALDLTSSASQDV 123 (555)
Q Consensus 48 Lrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~----~~~k~~L~k~i~~s~~~~e~~ 123 (555)
|=.+++.++.-+|..++...=.|+..+. ..-..++|=.++.+++=+|...-.. ..-+...+|+++.-..+++-.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~--~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLL--GGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHh--hhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 4457888888888888888877776655 2355689999999999998775422 112224456666555544444
Q ss_pred ccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHh
Q 008745 124 AVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHL 181 (555)
Q Consensus 124 ~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L 181 (555)
++.+ .-+|-+|-=++..++..+|.+.+....+..+...-+....+..+--+.-++
T Consensus 475 ~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 475 PTDP---LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred CCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhh
Confidence 4443 555666666777788888888877766665554445555555555555444
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.70 E-value=7.2 Score=47.48 Aligned_cols=61 Identities=7% Similarity=-0.076 Sum_probs=38.2
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 008745 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 480 (555)
Q Consensus 412 E~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t 480 (555)
.+++.+....|++++|.+.+.+..+. .|.. ..|.+-.|-+...-++|+.|...+..+.+.+
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l---~P~~-----a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDD---IDNQ-----ALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCCC-----chhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34566677788888887765555433 3433 3455566777777777777777666655443
No 36
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.69 E-value=2.1 Score=44.22 Aligned_cols=199 Identities=11% Similarity=0.020 Sum_probs=115.9
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhc-CCcchhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKA-IPSCFEL 84 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~-i~~~~dl 84 (555)
.+...+|.-+...|++..|+.+++..+...+. +|.........+|.+ +....+.++|...++++... .+ .+...++
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-~~~~~~~~~~~la~~-~~~~G~~~~A~~~~~~~~~~-~~~~~~~~~~ 225 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-SSMLRGHNWWHLALF-YLERGDYEAALAIYDTHIAP-SAESDPALDL 225 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-CcchhHHHHHHHHHH-HHHCCCHHHHHHHHHHHhcc-ccCCChHHHH
Confidence 34566677777777888888888887776542 344444455566665 44556778888888776321 11 1111121
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhh--
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE-- 162 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~-- 162 (555)
+... .+...+...|....+... ....+.... ..+...+.+.. .-.+-+....||...|...|+.....+..
T Consensus 226 -~~~~-~~l~~~~~~g~~~~~~~w-~~~~~~~~~---~~~~~~~~~~~-~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~ 298 (355)
T cd05804 226 -LDAA-SLLWRLELAGHVDVGDRW-EDLADYAAW---HFPDHGLAFND-LHAALALAGAGDKDALDKLLAALKGRASSAD 298 (355)
T ss_pred -hhHH-HHHHHHHhcCCCChHHHH-HHHHHHHHh---hcCcccchHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHhccC
Confidence 1121 333444555544333222 111121111 00111122222 24566677789999999999998888877
Q ss_pred -hCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHH
Q 008745 163 -ISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLH 223 (555)
Q Consensus 163 -~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~ 223 (555)
.+....++...+.++.+.-.+ .+.+.....+..+..+.. ...|+.-|.+++.
T Consensus 299 ~~~~~~~~~~~~~l~A~~~~~~-g~~~~A~~~L~~al~~a~--------~~ggs~aq~~~~~ 351 (355)
T cd05804 299 DNKQPARDVGLPLAEALYAFAE-GNYATALELLGPVRDDLA--------RIGGSHAQRDVFE 351 (355)
T ss_pred chhhhHHhhhHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH--------HhCCcHHHHHHHH
Confidence 666667777777777777766 556666667777777776 5667776777554
No 37
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.57 E-value=0.56 Score=48.17 Aligned_cols=148 Identities=12% Similarity=0.076 Sum_probs=99.8
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhc---cCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCC
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQ---SHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIP 79 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~---~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~ 79 (555)
..+..+...|+-++.. ++..||.|++-++. ..- .|..-|++.-++|.++.+.-.+.+.|-.++++|..+....+
T Consensus 73 ~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G--~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~ 149 (282)
T PF14938_consen 73 EAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG--RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG 149 (282)
T ss_dssp HHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 3456666777777666 88899999999885 223 58889999999999887776899999999999999887764
Q ss_pred cchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHH-HHhHHHHHHhhhcCChHHHHHHHhhHHH
Q 008745 80 SCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSC-NFNSQLANAFIIEGDYQSSISALQSGYV 158 (555)
Q Consensus 80 ~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~-~f~fqlA~~~~~~~D~~~A~~~L~~g~~ 158 (555)
. .-.--....=+|++|.+.|....+-.+..+.+..... -+..-|.. .+.|...-++...||.+.|-..++....
T Consensus 150 ~-~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~----~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 150 S-PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE----NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC----HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred C-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc----ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 2222233445678888888776555555554443322 12234544 3556666678889999999999887443
No 38
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.53 E-value=0.17 Score=49.64 Aligned_cols=108 Identities=18% Similarity=0.179 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH-HhhcCCcccHHH
Q 008745 430 ALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS-YFCIGDAESSSQ 508 (555)
Q Consensus 430 ~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~-yL~~g~~~s~~~ 508 (555)
.+..++...+..|.- +..++.+|.+....|++++|...|..|+++..+.. ... .+.|.+ |...|+. -..+
T Consensus 58 ~i~~l~~~L~~~P~~-----~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~-~~~--~~lA~aL~~~~g~~-~~~~ 128 (198)
T PRK10370 58 QLQALQDKIRANPQN-----SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA-ELY--AALATVLYYQAGQH-MTPQ 128 (198)
T ss_pred HHHHHHHHHHHCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHH--HHHHHHHHHhcCCC-CcHH
Confidence 334455556667765 44788899999999999999999999998876542 222 334443 3343431 1223
Q ss_pred HHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 509 AIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 509 aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
+.+.++...+...+.. -+++..|..+|.+|++++|..+
T Consensus 129 A~~~l~~al~~dP~~~------~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 129 TREMIDKALALDANEV------TALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHhCCCCh------hHHHHHHHHHHHcCCHHHHHHH
Confidence 3333333222221222 3588899999999999999764
No 39
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.44 E-value=0.16 Score=41.23 Aligned_cols=71 Identities=17% Similarity=0.023 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 008745 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 480 (555)
Q Consensus 409 ~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t 480 (555)
..+.+++.+-.-.++|++|.+...+..++.+..|+- .........-+|......|++++|+..|+.|++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD-HPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344677888999999999999999999998788763 22347788999999999999999999999998753
No 40
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.34 E-value=0.17 Score=39.05 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=69.1
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhh
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~ 86 (555)
.+..+|..+...+++..|++.++.+++..+ .. . .+...+|.+++. .+|.+.|..+++++.... +...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~-~--~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~---~~~~---- 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP--DN-A--DAYYNLAAAYYK-LGKYEEALEDYEKALELD---PDNA---- 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC--cc-H--HHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC---Ccch----
Confidence 456788888889999999999999998755 21 1 567778887766 478899999998885432 2222
Q ss_pred hHHHHHHHHHHHcCCCchHhHHHHHHHH
Q 008745 87 RTFSLLSQCYHLVGAIPPQKLILYKALD 114 (555)
Q Consensus 87 ~a~sLLa~~y~~~~~~~~~k~~L~k~i~ 114 (555)
.+...++.+|...|....+...+.++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 6678889999998876655554455443
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.15 E-value=0.85 Score=49.27 Aligned_cols=163 Identities=12% Similarity=0.038 Sum_probs=103.5
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008745 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (555)
Q Consensus 344 aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~ 423 (555)
.+.|++.+..+-..|.+++|.+|+.++.+. .|+ .++ .+ .+.. +-+.+-.++
T Consensus 118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~----------~p~---~~l---~~---------~~~~----a~l~l~~~~ 168 (409)
T TIGR00540 118 VLNLIKAAEAAQQRGDEARANQHLEEAAEL----------AGN---DNI---LV---------EIAR----TRILLAQNE 168 (409)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCc---Cch---HH---------HHHH----HHHHHHCCC
Confidence 377888899999999999999999887654 222 110 00 1111 445667899
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHhhcCC
Q 008745 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT-ESKSMQAMCHAYAAVSYFCIGD 502 (555)
Q Consensus 424 ~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t-~s~~~~~~~~lnlAi~yL~~g~ 502 (555)
++.|.+.+. .+.+..|+- +.+..+.|......|++++|...+....+.. .+++--.-.......-++..+.
T Consensus 169 ~~~Al~~l~---~l~~~~P~~-----~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 169 LHAARHGVD---KLLEMAPRH-----KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHHHHHH---HHHHhCCCC-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999988854 445556764 3567899999999999999999999888763 3333222222222333343333
Q ss_pred cc----cHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 503 AE----SSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 503 ~~----s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
.+ .+..+.+.+ |. ..|....+.+..|-.++.+|++++|...
T Consensus 241 ~~~~~~~L~~~~~~~-p~--------~~~~~~~l~~~~a~~l~~~g~~~~A~~~ 285 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQ-PR--------HRRHNIALKIALAEHLIDCDDHDSAQEI 285 (409)
T ss_pred HhcCHHHHHHHHHHC-CH--------HHhCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 22 233333321 21 1222445678888899999999999764
No 42
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.76 E-value=0.33 Score=41.37 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=65.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlA 494 (555)
+....-.+++++|.+.+.++.+. +|.-. ..+..++..|......|+++.|...|..+++...+.+...-+..+++
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKK---YPKST--YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---CCCcc--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45566789999999998877654 45321 34677899999999999999999999999987655544445567778
Q ss_pred HHHhhcCCccc
Q 008745 495 VSYFCIGDAES 505 (555)
Q Consensus 495 i~yL~~g~~~s 505 (555)
.+|...++.+.
T Consensus 84 ~~~~~~~~~~~ 94 (119)
T TIGR02795 84 MSLQELGDKEK 94 (119)
T ss_pred HHHHHhCChHH
Confidence 88887777554
No 43
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.58 E-value=0.31 Score=47.72 Aligned_cols=100 Identities=13% Similarity=0.117 Sum_probs=74.4
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCC--hHHHHHHHHHHHHHHhcCCcch
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHN--VNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N--~~~AkthLEka~~l~k~i~~~~ 82 (555)
..+...|+..+...|++.+|+.|++.+++..| . .+.++..+|.+|+...++ .++|+.+|+++. +.-|+..
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P---~--~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al---~~dP~~~ 144 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRG---E--NAELYAALATVLYYQAGQHMTPQTREMIDKAL---ALDANEV 144 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---C--CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH---HhCCCCh
Confidence 34667788888888999999999999998765 1 455668888888766555 589999998884 3334332
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHh
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s 116 (555)
.+.++||-.+.+.|....+.....+.++.-
T Consensus 145 ----~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 145 ----TALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred ----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 478899999999998877766667776653
No 44
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.49 E-value=0.36 Score=37.13 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=57.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 008745 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (555)
Q Consensus 414 ~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnl 493 (555)
++.+....+++.+|.+.+.++.+. .|.. +..++..|.+....|+++.|...|..+++...... .+..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 74 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL---DPDN-----ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA---KAYYNL 74 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc---CCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch---hHHHHH
Confidence 345556689999999887776654 3332 26678899999999999999999999988765544 233445
Q ss_pred HHHHhhcCCccc
Q 008745 494 AVSYFCIGDAES 505 (555)
Q Consensus 494 Ai~yL~~g~~~s 505 (555)
+.++...|+.+.
T Consensus 75 ~~~~~~~~~~~~ 86 (100)
T cd00189 75 GLAYYKLGKYEE 86 (100)
T ss_pred HHHHHHHHhHHH
Confidence 666666566443
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=94.48 E-value=1 Score=46.54 Aligned_cols=156 Identities=12% Similarity=-0.004 Sum_probs=90.5
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 008745 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (555)
Q Consensus 345 Lvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~ 424 (555)
-+|..-+......|.+++|...++++++. .|+ +...| -+++.+....+++
T Consensus 99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----------~P~-------~~~a~-------------~~lg~~l~~~g~~ 148 (296)
T PRK11189 99 DAYNYLGIYLTQAGNFDAAYEAFDSVLEL----------DPT-------YNYAY-------------LNRGIALYYGGRY 148 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCC-------CHHHH-------------HHHHHHHHHCCCH
Confidence 34455567778889999999888888765 232 11222 2234455668999
Q ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcc
Q 008745 425 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 504 (555)
Q Consensus 425 ~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~ 504 (555)
++|.+.+....+ ..|.-.. ..+........+++++|...|..++...+. +.+. . +++++..|+-+
T Consensus 149 ~eA~~~~~~al~---~~P~~~~------~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~-~~~~---~--~~~~~~lg~~~ 213 (296)
T PRK11189 149 ELAQDDLLAFYQ---DDPNDPY------RALWLYLAESKLDPKQAKENLKQRYEKLDK-EQWG---W--NIVEFYLGKIS 213 (296)
T ss_pred HHHHHHHHHHHH---hCCCCHH------HHHHHHHHHccCCHHHHHHHHHHHHhhCCc-cccH---H--HHHHHHccCCC
Confidence 999888777654 4554321 111112345678899999999776644332 2222 1 23333334422
Q ss_pred c---HHHHHHhhCccccccccccchh-HHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 505 S---SSQAIDLIGPVYQMKDTINGVR-EEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 505 s---~~~aL~li~P~~~~~~~~~~~~-~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
. +..+.+.++- ..-+. .-+-++|--|.....+||+++|+..
T Consensus 214 ~~~~~~~~~~~~~~-------~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~ 258 (296)
T PRK11189 214 EETLMERLKAGATD-------NTELAERLCETYFYLAKYYLSLGDLDEAAAL 258 (296)
T ss_pred HHHHHHHHHhcCCC-------cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1 3333322211 11111 1245799999999999999999864
No 46
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=94.48 E-value=16 Score=44.61 Aligned_cols=97 Identities=4% Similarity=-0.003 Sum_probs=70.2
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 008745 349 MVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ 428 (555)
Q Consensus 349 lsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~ 428 (555)
.-+......|..++|.+.+++++.. .|+ .+ ..+ -++..+-.-.+++++|.
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l----------~Pd--------~~----~a~--------~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALEL----------EPN--------NS----NYQ--------AALGYALWDSGDIAQSR 663 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----------CCC--------CH----HHH--------HHHHHHHHHCCCHHHHH
Confidence 3355667789999999999888776 333 11 111 12233444579999999
Q ss_pred HHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh
Q 008745 429 EALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (555)
Q Consensus 429 ~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~ 483 (555)
+.+....+ ..|.. +.+++-+|......|++++|+..|..|+++..+.
T Consensus 664 ~~l~~AL~---l~P~~-----~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 664 EMLERAHK---GLPDD-----PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHH---hCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 87665544 45654 4678999999999999999999999999877654
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.42 E-value=1.1 Score=48.17 Aligned_cols=89 Identities=13% Similarity=0.117 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcccHHHHHHhhCccccccccccchhH
Q 008745 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 528 (555)
Q Consensus 449 ~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ 528 (555)
.+-++...+.-....|+.++|......+++...++.+ +.++ .++..++ ...+++.++...+.+..+..+
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l---~~l~---~~l~~~~---~~~al~~~e~~lk~~P~~~~l-- 330 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERL---VLLI---PRLKTNN---PEQLEKVLRQQIKQHGDTPLL-- 330 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH---HHHH---hhccCCC---hHHHHHHHHHHHhhCCCCHHH--
Confidence 4557777888888999999999999999885444421 1111 2222233 444444444433333333334
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhh
Q 008745 529 EASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 529 ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
++..|-.++.++++.+|+.+
T Consensus 331 ----~l~lgrl~~~~~~~~~A~~~ 350 (398)
T PRK10747 331 ----WSTLGQLLMKHGEWQEASLA 350 (398)
T ss_pred ----HHHHHHHHHHCCCHHHHHHH
Confidence 88999999999999999875
No 48
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=11 Score=42.38 Aligned_cols=215 Identities=19% Similarity=0.196 Sum_probs=125.4
Q ss_pred cHHHHHHHHHHhh-ccCCCCChhHHHHHHHHhhHHH---HhhcC-ChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHH
Q 008745 20 EIGKAVKCLEAIC-QSHVSFLPIIEVKTRLRISTLL---LKHTH-NVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQ 94 (555)
Q Consensus 20 ~i~~ai~CLeAvl-~~~~~l~P~~EA~~rLrla~lL---~e~T~-N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~ 94 (555)
|+-.|=.=||-+. ..+. -|..+ +..++=+++| +.+++ |++-||.-|-||..++++.| -.-|.--+=||+
T Consensus 62 N~elAksHLekA~~i~~~--ip~fy-dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p---~wsckllfQLaq 135 (629)
T KOG2300|consen 62 NVELAKSHLEKAWLISKS--IPSFY-DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP---YWSCKLLFQLAQ 135 (629)
T ss_pred cHHHHHHHHHHHHHHHcc--cccHH-hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc---hhhHHHHHHHHH
Confidence 4444444444332 3444 56666 6667766665 44555 99999999999999999887 344444556777
Q ss_pred HHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHH-hhhCC----hhHH
Q 008745 95 CYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA-TEISY----PDLQ 169 (555)
Q Consensus 95 ~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A-~~~~~----~~~~ 169 (555)
++.-....+.+-.+|--|-+.+ |. ...++..--|......++..|.|.......++..-.+- +-.+| ..++
T Consensus 136 l~~idkD~~sA~elLavga~sA--d~--~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lk 211 (629)
T KOG2300|consen 136 LHIIDKDFPSALELLAVGAESA--DH--ICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLK 211 (629)
T ss_pred HHhhhccchhHHHHHhcccccc--ch--hhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHH
Confidence 7666555554433322222221 11 11234444555566678888877776666666544443 33333 5789
Q ss_pred HHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccc---cccchhhh-------hHHHHHHH-HH------hhhh
Q 008745 170 MFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRG---QCLGLLFY-------NELLHIFY-RL------RICD 232 (555)
Q Consensus 170 v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~---~~~g~~~~-------~e~l~vfy-~l------rvc~ 232 (555)
|||...+.-..+-. ...-+|.+++.+.-.=+.+|.+..|. .|-|.+-- ||-+.+.- .. .-..
T Consensus 212 vFyl~lql~yy~~~-gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy 290 (629)
T KOG2300|consen 212 VFYLVLQLSYYLLP-GQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGY 290 (629)
T ss_pred HHHHHHHHHHHhcc-cchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHH
Confidence 99999888776665 55677888877666666677776542 44443311 66555532 11 2345
Q ss_pred hhhhhhhhhhhHHHHH
Q 008745 233 YKNAAHHVDNLDAAMK 248 (555)
Q Consensus 233 y~~a~~~v~~ld~~~~ 248 (555)
|+-+.++ -|++++
T Consensus 291 ~~~~~K~---tDe~i~ 303 (629)
T KOG2300|consen 291 FKKAQKY---TDEAIK 303 (629)
T ss_pred HHHHHHH---HHHHHH
Confidence 6666664 345554
No 49
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.06 E-value=0.39 Score=40.90 Aligned_cols=96 Identities=14% Similarity=0.150 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcccHHHHHHhhCccccccccccchhHHH
Q 008745 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA 530 (555)
Q Consensus 451 ~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka 530 (555)
-+.|-.|......|++++|..+|..+++...+.....-+..+++.+|...|+.+.....++.+-..+ +++. . ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~--~--~~ 76 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSP--K--AP 76 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCC--c--cc
Confidence 4568889999999999999999999988766655556677788999988777554322222211111 1111 0 12
Q ss_pred HHHHHHHHHHHhhcChhhhhhh
Q 008745 531 SLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 531 ~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
-+++-.|.....++++.+|..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~ 98 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKAT 98 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHH
Confidence 3466777777889999988754
No 50
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.03 E-value=0.63 Score=41.20 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=75.7
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+..++.+|..+...++...|+.+++.+++..+ . ....+.++|.+++.- .|.++|...++++... -|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~--~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~---~p~---- 83 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDP---Y--NSRYWLGLAACCQML-KEYEEAIDAYALAAAL---DPD---- 83 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC---C--cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc---CCC----
Confidence 45688999999999999999999999998754 2 234556677666654 7789999999887432 233
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHh
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s 116 (555)
....+..++.+|.+.|....+.+.++++++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 24556789999999998887777778877764
No 51
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.03 E-value=0.46 Score=44.85 Aligned_cols=66 Identities=26% Similarity=0.318 Sum_probs=52.6
Q ss_pred hhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCccc----HHHHHH
Q 008745 446 QACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAID 511 (555)
Q Consensus 446 ~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s----~~~aL~ 511 (555)
+.......+-.|.+....|++++|..+|..|++...++.-...+..+++.+|...|+.+. +.++++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446777889999999999999999999999998776655445677889999999888553 444454
No 52
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.01 E-value=0.35 Score=37.84 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=50.7
Q ss_pred HHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHH
Q 008745 9 WGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQL 73 (555)
Q Consensus 9 l~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~ 73 (555)
+.+|..+...+++..|+.|++.+++..| . .+.+++.+|.+++ ...+.++|...++++..
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P----~-~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDP----D-NPEAWYLLGRILY-QQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCST----T-HHHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCC----C-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 3578889999999999999999998865 2 7788999999999 78999999999998854
No 53
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.84 E-value=0.32 Score=39.41 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=56.6
Q ss_pred HHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHh
Q 008745 44 VKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (555)
Q Consensus 44 A~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s 116 (555)
|.+-.-+|.+++ ...+.++|.+.+++|..+.+..+.-....-.+..-|++||...|....+.+.+.|+++..
T Consensus 5 a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 455566777776 888999999999999988666665334457889999999999999888888888888864
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.78 E-value=6.6 Score=44.38 Aligned_cols=196 Identities=15% Similarity=0.075 Sum_probs=140.0
Q ss_pred hhHHHHHHHhHHHHHhhccHHHHHHHHHHhhcc--CCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCC
Q 008745 2 EAVAEGLWGLADYHENKGEIGKAVKCLEAICQS--HVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIP 79 (555)
Q Consensus 2 ~~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~--~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~ 79 (555)
++++..|--||.-.-..++++.|--|++-++.- +.-..+..|+...|=--.++++.-+-+++|+..|.++..+.+..+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 378889999999999999999999998888851 111346667777888888899999999999999999988877666
Q ss_pred cchh-hhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHH
Q 008745 80 SCFE-LKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYV 158 (555)
Q Consensus 80 ~~~d-lK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~ 158 (555)
+.++ -==.+.-=|+++|+++|+...+....+|+|....+... ...+-.-.++-++|..+..-+.+..|.........
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~--~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG--KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 6665 33334445899999999998888999999998865322 22344445666899988777888889999887777
Q ss_pred HHhhhCChhHHHHHHHH---HHHHHhcccCchhHHHHHHHHHHHHHH
Q 008745 159 CATEISYPDLQMFFATA---ILHVHLMQWDDENSVLRSINQCDRVWE 202 (555)
Q Consensus 159 ~A~~~~~~~~~v~fals---~~~~~L~~~~~~~~v~~~l~~~~~l~~ 202 (555)
+....|...-.+.+... .+.-.+ -+++.+......+...++
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~---g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQ---GNYEAAEELEEKVLNARE 481 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHH
Confidence 77666665544444443 334344 334444444444444443
No 55
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.50 E-value=6.2 Score=45.35 Aligned_cols=128 Identities=16% Similarity=0.221 Sum_probs=78.4
Q ss_pred hHHHHHHHhHHHHHhhc--cHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhc-CC
Q 008745 3 AVAEGLWGLADYHENKG--EIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKA-IP 79 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~--~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~-i~ 79 (555)
.+-..|=++||..|... +-..|+.|++. +..+. +-+= -+..|+|+..||--++ ++|+..++....+..- +.
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-lp~h~---~nt~-wvl~q~GrayFEl~~Y-~~a~~~F~~~r~~~p~rv~ 388 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEK-LPSHH---YNTG-WVLSQLGRAYFELIEY-DQAERIFSLVRRIEPYRVK 388 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHhc---CCch-HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccccc
Confidence 34567788999999988 89999999999 54332 3333 7899999999998876 5788888776543211 11
Q ss_pred cchhhhhhHHHHHHHHHHHcCCCchHhHHHHHH-HHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhh
Q 008745 80 SCFELKCRTFSLLSQCYHLVGAIPPQKLILYKA-LDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQS 155 (555)
Q Consensus 80 ~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~-i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~ 155 (555)
+++ .+| --+||.....+.- .|-|. |+.... +..-|-+ +++.+.-++|.+.|+...+.
T Consensus 389 ~me-----iyS--T~LWHLq~~v~Ls--~Laq~Li~~~~~-----sPesWca-----~GNcfSLQkdh~~Aik~f~R 446 (638)
T KOG1126|consen 389 GME-----IYS--TTLWHLQDEVALS--YLAQDLIDTDPN-----SPESWCA-----LGNCFSLQKDHDTAIKCFKR 446 (638)
T ss_pred chh-----HHH--HHHHHHHhhHHHH--HHHHHHHhhCCC-----CcHHHHH-----hcchhhhhhHHHHHHHHHHH
Confidence 111 111 1234444433322 22232 222222 2335533 45667778899999887665
No 56
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=93.48 E-value=0.36 Score=50.32 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHH
Q 008745 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 488 (555)
Q Consensus 409 ~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~ 488 (555)
++-|-.|-+..+..++.+|.-...++ .+++|. .+.+....+...+..|++++|+.....|+..-... --
T Consensus 168 qLa~awv~l~~g~e~~~~A~y~f~El---~~~~~~-----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~-~d-- 236 (290)
T PF04733_consen 168 QLAEAWVNLATGGEKYQDAFYIFEEL---SDKFGS-----TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND-PD-- 236 (290)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHH---HCCS-------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH-HH--
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHH---HhccCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC-HH--
Confidence 44453333333333455555555444 333332 24566677788899999999999999987533322 22
Q ss_pred HHHHHHHHHhhcCCccc-HHHHHHhhCcc
Q 008745 489 CHAYAAVSYFCIGDAES-SSQAIDLIGPV 516 (555)
Q Consensus 489 ~~lnlAi~yL~~g~~~s-~~~aL~li~P~ 516 (555)
+..|++++.+..|++.+ ..+.++.+...
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 34466777666688744 67777665544
No 57
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.33 E-value=0.46 Score=37.47 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=55.9
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHH
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLL 74 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l 74 (555)
+..+..+|..+...+++..|+.|++-+++..| . .+.+...+|.++++-.+|..+|..++++|..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p----~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP----N-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST----T-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----C-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56778899999999999999999999999865 2 45689999999888777899999999998653
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=93.06 E-value=1.6 Score=49.19 Aligned_cols=92 Identities=10% Similarity=-0.091 Sum_probs=50.5
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlA 494 (555)
+.+....|++++|.+.+..+.+. .|.-. ..++..|......|++++|...|..+++...... ..+..+++
T Consensus 379 g~~l~~~G~~~eAi~~~~~Al~l---~P~~~-----~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~--~~~~~~la 448 (553)
T PRK12370 379 GWNLFMAGQLEEALQTINECLKL---DPTRA-----AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN--PILLSMQV 448 (553)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCCCh-----hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC--HHHHHHHH
Confidence 44555668888887776665544 44421 1112223233346788888888887765532111 12345566
Q ss_pred HHHhhcCCcccHHHHHHhhCcc
Q 008745 495 VSYFCIGDAESSSQAIDLIGPV 516 (555)
Q Consensus 495 i~yL~~g~~~s~~~aL~li~P~ 516 (555)
.+|...|+.+.....++.+.|.
T Consensus 449 ~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 449 MFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHhCCCHHHHHHHHHHhhhc
Confidence 7776767765544444444443
No 59
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=92.91 E-value=0.27 Score=40.76 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=54.6
Q ss_pred hCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHh
Q 008745 463 VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR 542 (555)
Q Consensus 463 ~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~ 542 (555)
.|+++.|...|...+...++.+ .....+++|.+|.+.|+-+....+++. .+. .+ .. ....|..|-.++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~---~~--~~----~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL---DP--SN----PDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH---HH--CH----HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC---CC--CC----HHHHHHHHHHHHH
Confidence 4889999999999998887544 556677799999997665555555543 111 11 11 2345566999999
Q ss_pred hcChhhhhhh
Q 008745 543 QQDFQEARLA 552 (555)
Q Consensus 543 q~~~~eAr~~ 552 (555)
.|+++||..+
T Consensus 71 l~~y~eAi~~ 80 (84)
T PF12895_consen 71 LGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHH
T ss_pred hCCHHHHHHH
Confidence 9999999876
No 60
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=92.72 E-value=2.5 Score=37.29 Aligned_cols=62 Identities=15% Similarity=-0.020 Sum_probs=48.2
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~ 484 (555)
+.+....++++.|.+.+.++... .|+. +..++.+|.+....|+++.|...|+.+++...+..
T Consensus 58 a~~~~~~~~~~~A~~~~~~~~~~---~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 58 AACCQMLKEYEEAIDAYALAAAL---DPDD-----PRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---CCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 44556668899999887776655 3442 45668899999999999999999999998875543
No 61
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=92.63 E-value=0.91 Score=41.97 Aligned_cols=96 Identities=7% Similarity=-0.084 Sum_probs=69.4
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008745 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (555)
Q Consensus 351 vi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~ 430 (555)
+.....+|.+++|..+++.+++. .|. +...| -+++.+....|++++|...
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~----------~P~-------~~~a~-------------~~lg~~~~~~g~~~~A~~~ 80 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMA----------QPW-------SWRAH-------------IALAGTWMMLKEYTTAINF 80 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc----------CCC-------cHHHH-------------HHHHHHHHHHhhHHHHHHH
Confidence 45557889999999888776554 222 01122 2236666778999999988
Q ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh
Q 008745 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (555)
Q Consensus 431 l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~ 484 (555)
....... .|. .+..++-+|.....+|++++|...|..|++...+..
T Consensus 81 y~~Al~l---~p~-----~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 81 YGHALML---DAS-----HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred HHHHHhc---CCC-----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 7777654 333 255678899999999999999999999998776553
No 62
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.56 E-value=0.4 Score=37.48 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=47.2
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
+...+..++|++|.+.+.++. ..+|. .+..++.+|......|++++|...|+.+++...+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l---~~~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQAL---KQDPD-----NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHH---CCSTT-----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHH---HHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 455677899999988866554 44465 4778899999999999999999999999877654
No 63
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.50 E-value=1.5 Score=42.45 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=74.9
Q ss_pred hhHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcc
Q 008745 2 EAVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSC 81 (555)
Q Consensus 2 ~~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~ 81 (555)
++|-.++..+|++|..-|++..|++|+..+...-. .|.--.-..|.+-++-+++- |..+.+++++||..+....+.-
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~--~~~~~id~~l~~irv~i~~~-d~~~v~~~i~ka~~~~~~~~d~ 109 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT--SPGHKIDMCLNVIRVAIFFG-DWSHVEKYIEKAESLIEKGGDW 109 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhccchH
Confidence 47889999999999999999999999999988766 67777777888888888775 8889999999998877664322
Q ss_pred -hhhhhhHHHHHHHHH
Q 008745 82 -FELKCRTFSLLSQCY 96 (555)
Q Consensus 82 -~dlK~~a~sLLa~~y 96 (555)
..-|+..+..|+.+.
T Consensus 110 ~~~nrlk~~~gL~~l~ 125 (177)
T PF10602_consen 110 ERRNRLKVYEGLANLA 125 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 256677777777764
No 64
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.38 E-value=0.97 Score=41.26 Aligned_cols=95 Identities=17% Similarity=0.033 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcccHHHHHHhhCccccccccccchhHHH
Q 008745 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA 530 (555)
Q Consensus 451 ~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka 530 (555)
.++|=.+--..++|+.++|..+|..|+..--+.+.+.=+.++++-+|-..|+++..-.+|+-.-. ..++ ..+ ..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~--~~p~--~~~--~~ 75 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE--EFPD--DEL--NA 75 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCC--ccc--cH
Confidence 45677788889999999999999999886656666666777888888888887764444432111 1121 112 22
Q ss_pred HHHHHHHHHHHhhcChhhhhh
Q 008745 531 SLHFAYGLLLMRQQDFQEARL 551 (555)
Q Consensus 531 ~~~fv~gl~~~~q~~~~eAr~ 551 (555)
.+-..+++.+...||++||-.
T Consensus 76 ~l~~f~Al~L~~~gr~~eAl~ 96 (120)
T PF12688_consen 76 ALRVFLALALYNLGRPKEALE 96 (120)
T ss_pred HHHHHHHHHHHHCCCHHHHHH
Confidence 334557889999999999965
No 65
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.05 E-value=5.3 Score=39.85 Aligned_cols=112 Identities=15% Similarity=0.152 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcccHHH
Q 008745 429 EALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQ 508 (555)
Q Consensus 429 ~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s~~~ 508 (555)
+.+..+......+|...++- +--+-...-..=-|+++.|+.|.+.++..+.+..+..++.+++|.+.+..+..|..-.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~--laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~ 147 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAV--LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALK 147 (207)
T ss_pred hhHHHHHHHHhhccccHHHH--HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44555555666676654332 2222333444556899999999999999999999999999999999998765554444
Q ss_pred HHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 509 AIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 509 aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
+|+.|.- +++.+.+ -=..|=.++.+||-+|||..
T Consensus 148 ~L~t~~~-----~~w~~~~-----~elrGDill~kg~k~~Ar~a 181 (207)
T COG2976 148 TLDTIKE-----ESWAAIV-----AELRGDILLAKGDKQEARAA 181 (207)
T ss_pred HHhcccc-----ccHHHHH-----HHHhhhHHHHcCchHHHHHH
Confidence 4443322 2456653 34688888999999999863
No 66
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=91.98 E-value=1.6 Score=36.08 Aligned_cols=83 Identities=19% Similarity=0.210 Sum_probs=55.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 008745 357 KGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKN 436 (555)
Q Consensus 357 kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~ 436 (555)
.|.+++|.+++++.+.. .|. ..+ ...| -+++.|-.-.++|..|++.+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~----------~~~--~~~---~~~~-------------~~la~~~~~~~~y~~A~~~~~~--- 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL----------DPT--NPN---SAYL-------------YNLAQCYFQQGKYEEAIELLQK--- 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHH----------HCG--THH---HHHH-------------HHHHHHHHHTTHHHHHHHHHHC---
T ss_pred CccHHHHHHHHHHHHHH----------CCC--Chh---HHHH-------------HHHHHHHHHCCCHHHHHHHHHH---
Confidence 47788888888777665 111 000 2222 1246778889999999988666
Q ss_pred HHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008745 437 WFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEA 476 (555)
Q Consensus 437 ~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A 476 (555)
....|. .+..+|+.|.....+|++++|..+|..|
T Consensus 51 -~~~~~~-----~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 51 -LKLDPS-----NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp -HTHHHC-----HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -hCCCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 111122 2567888899999999999999999864
No 67
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=91.83 E-value=1.3 Score=41.79 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=66.6
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+..+..++......+++..|+.|++.+++..+ .|.-.+.....+|.+++. ..+.++|..+++++... -|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~---~p~---- 104 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEE--DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALEL---NPK---- 104 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh---Ccc----
Confidence 45677888888899999999999999997654 332345677777777765 68999999999998653 122
Q ss_pred hhhHHHHHHHHHHHcCCCc
Q 008745 85 KCRTFSLLSQCYHLVGAIP 103 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~ 103 (555)
-..+...++.+|...|...
T Consensus 105 ~~~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 105 QPSALNNIAVIYHKRGEKA 123 (172)
T ss_pred cHHHHHHHHHHHHHcCChH
Confidence 1455678899999888653
No 68
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=91.77 E-value=0.7 Score=36.41 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=50.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhc
Q 008745 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG-CYSEAAFHYVEAAKIT 480 (555)
Q Consensus 413 ~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g-~~~~A~~~F~~A~k~t 480 (555)
+.+.+..-.++|++|.+...+..+.. |. .+.+++-+|...+..| ++++|...|..|+++.
T Consensus 8 ~~g~~~~~~~~~~~A~~~~~~ai~~~---p~-----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 8 NLGQIYFQQGDYEEAIEYFEKAIELD---PN-----NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHS---TT-----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---CC-----CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45777888999999999988888764 33 2458899999999999 7999999999998763
No 69
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.63 E-value=1.9 Score=44.35 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=67.6
Q ss_pred hcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhc
Q 008745 421 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 500 (555)
Q Consensus 421 ~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~ 500 (555)
.++|++|+.. .......+|.- ...+..+|.+|......|++++|...|..+++.-.+.+...-+-++++.+|...
T Consensus 156 ~~~y~~Ai~a---f~~fl~~yP~s--~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 156 KSRQDDAIVA---FQNFVKKYPDS--TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred cCCHHHHHHH---HHHHHHHCcCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 5899988877 45556667764 366789999999999999999999999999988777777777777788888887
Q ss_pred CCcccHHHHH
Q 008745 501 GDAESSSQAI 510 (555)
Q Consensus 501 g~~~s~~~aL 510 (555)
|+.+..-..+
T Consensus 231 g~~~~A~~~~ 240 (263)
T PRK10803 231 GDTAKAKAVY 240 (263)
T ss_pred CCHHHHHHHH
Confidence 7766544443
No 70
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=91.56 E-value=1.6 Score=44.20 Aligned_cols=129 Identities=20% Similarity=0.195 Sum_probs=75.5
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+..+..+|+-....|++..|++|++-+++..| -..++ +..++.+|. .+.+.++|+..|++.... .++-.+
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P---~~~~~--~~~l~~~li-~~~~~~~~~~~l~~~~~~---~~~~~~- 215 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDP---DDPDA--RNALAWLLI-DMGDYDEAREALKRLLKA---APDDPD- 215 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T---T-HHH--HHHHHHHHC-TTCHHHHHHHHHHHHHHH----HTSCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHH--HHHHHHHHH-HCCChHHHHHHHHHHHHH---CcCHHH-
Confidence 34677889999999999999999999998754 22333 445677765 455777888888775332 222222
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhH
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSG 156 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g 156 (555)
....++.+|...|....+-..+++++..--. .+. .++.+|.++...|+...|.+..+..
T Consensus 216 ---~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~------d~~----~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 216 ---LWDALAAAYLQLGRYEEALEYLEKALKLNPD------DPL----WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp ---HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-------HH----HHHHHHHHHT---------------
T ss_pred ---HHHHHHHHhcccccccccccccccccccccc------ccc----ccccccccccccccccccccccccc
Confidence 3456799999999777666666776653322 233 3456789999999999998887653
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=91.54 E-value=3.2 Score=42.88 Aligned_cols=121 Identities=13% Similarity=0.113 Sum_probs=92.9
Q ss_pred cHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHc
Q 008745 20 EIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLV 99 (555)
Q Consensus 20 ~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~ 99 (555)
....+|.++..++...+ +.|...|......|.+ +....+.++|...+++|..+ -|+. ..++..++.+|...
T Consensus 41 ~~e~~i~~~~~~l~~~~-~~~~~~a~~~~~~g~~-~~~~g~~~~A~~~~~~Al~l---~P~~----~~a~~~lg~~~~~~ 111 (296)
T PRK11189 41 QQEVILARLNQILASRD-LTDEERAQLHYERGVL-YDSLGLRALARNDFSQALAL---RPDM----ADAYNYLGIYLTQA 111 (296)
T ss_pred HHHHHHHHHHHHHcccc-CCcHhhHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHc---CCCC----HHHHHHHHHHHHHC
Confidence 55678899988887654 6788889999999986 44567899999999998442 3443 46788999999999
Q ss_pred CCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHH
Q 008745 100 GAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (555)
Q Consensus 100 ~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~ 159 (555)
|....+.....+++++.-. +.. ..+.++.++...|++..|++.+++....
T Consensus 112 g~~~~A~~~~~~Al~l~P~---------~~~-a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPT---------YNY-AYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCHHHHHHHHHHHHHhCCC---------CHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9998888888888876321 111 1255888888899999999999996543
No 72
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=91.54 E-value=1.3 Score=47.28 Aligned_cols=95 Identities=9% Similarity=0.122 Sum_probs=68.7
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008745 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (555)
Q Consensus 351 vi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~ 430 (555)
+-.+...|.+++|..++.++++. .|+ . ...| -+.+.+.+..+++++|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~----------~P~-----~--~~a~-------------~~~a~~~~~~g~~~eAl~~ 58 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL----------DPN-----N--AELY-------------ADRAQANIKLGNFTEAVAD 58 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh----------CCC-----C--HHHH-------------HHHHHHHHHcCCHHHHHHH
Confidence 34455678889999888888775 222 0 1112 2235556667999999988
Q ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh
Q 008745 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (555)
Q Consensus 431 l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~ 483 (555)
+.++.++ .|.. +..++.+|.....+|++++|..+|..|+++..+.
T Consensus 59 ~~~Al~l---~P~~-----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 59 ANKAIEL---DPSL-----AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHh---CcCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 7777665 4542 4467899999999999999999999999887544
No 73
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=91.30 E-value=2.9 Score=39.04 Aligned_cols=101 Identities=11% Similarity=0.008 Sum_probs=68.1
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+..+..++......+++..|+.+++.++.-.+ .|...+.+...+|.++ .+..+.++|...+++|..+- +..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~--~~~~~~~~~~~lg~~~-~~~g~~~eA~~~~~~Al~~~---~~~--- 105 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI--DPYDRSYILYNIGLIH-TSNGEHTKALEYYFQALERN---PFL--- 105 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cchhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC---cCc---
Confidence 45667788888899999999999999987654 3434455677776554 55788899999999996542 221
Q ss_pred hhhHHHHHHHHHH-------HcCCCchHhHHHHHHHHH
Q 008745 85 KCRTFSLLSQCYH-------LVGAIPPQKLILYKALDL 115 (555)
Q Consensus 85 K~~a~sLLa~~y~-------~~~~~~~~k~~L~k~i~~ 115 (555)
..+...++.+|. ..|....+...+.++++.
T Consensus 106 -~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 106 -PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred -HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 234556666666 555554444444555544
No 74
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.22 E-value=5.7 Score=41.20 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008745 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVE 475 (555)
Q Consensus 409 ~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~ 475 (555)
.++|.....++.+++.+.|++.++++++-|..+|+. .-+.|+...++|.+++|...|.+
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV--------~~lkam~lEa~~~~~~A~e~y~~ 111 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRV--------GKLKAMLLEATGNYKEAIEYYES 111 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhH--------HHHHHHHHHHhhchhhHHHHHHH
Confidence 344777778999999999999999999888666664 45788899999999999999985
No 75
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=91.00 E-value=1.5 Score=34.87 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=50.8
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHH
Q 008745 417 VELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 486 (555)
Q Consensus 417 ~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~ 486 (555)
+.+...+|+.|.+.+..+..+ .|. .+..++..|.....+|++++|...|..+++..++.+..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~---~p~-----~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL---DPD-----DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh---Ccc-----cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 356788999999988877776 454 45677889999999999999999999999887766543
No 76
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=90.83 E-value=2 Score=39.68 Aligned_cols=98 Identities=9% Similarity=0.110 Sum_probs=76.8
Q ss_pred HHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhh
Q 008745 8 LWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCR 87 (555)
Q Consensus 8 Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~ 87 (555)
+..++..+...|++..|+.+++.++...| . .+.++..+|.++.. ..+.++|.+.+++|..+ -|.. ..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P---~--~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~l---~p~~----~~ 93 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP---W--SWRAHIALAGTWMM-LKEYTTAINFYGHALML---DASH----PE 93 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC---C--cHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhc---CCCC----cH
Confidence 45567778888899999999999998765 2 34566788887766 88999999999999653 2333 35
Q ss_pred HHHHHHHHHHHcCCCchHhHHHHHHHHHhhh
Q 008745 88 TFSLLSQCYHLVGAIPPQKLILYKALDLTSS 118 (555)
Q Consensus 88 a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~ 118 (555)
+.+-++.+|...|....+...+.++|+..-.
T Consensus 94 a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 94 PVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6778899999999998888888888886544
No 77
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=90.81 E-value=3 Score=40.05 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=76.6
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlA 494 (555)
...-...|++++|.+...-++.. +.....=.|=+|...+.+|++++|..-|..|+.+..+.+. +--|++
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~---~~~~ag 110 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ---APWAAA 110 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch---HHHHHH
Confidence 44466789999999875444333 2233455788999999999999999999999888765543 445788
Q ss_pred HHHhhcCCcccHHHHHHhhCccccccccccchhHHHHHHH
Q 008745 495 VSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHF 534 (555)
Q Consensus 495 i~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~f 534 (555)
+.|+..|+.+...++++.+--.|...+....+++||-.+.
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L 150 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML 150 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 8999999976544444433333434445778888876654
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=90.45 E-value=36 Score=38.60 Aligned_cols=171 Identities=18% Similarity=0.136 Sum_probs=108.5
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 008745 353 LGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALV 432 (555)
Q Consensus 353 ~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~ 432 (555)
..--.|.|++|+-|+++|++.... .+|..++ .+ ..++. +.+.+.+.++++++|.+-+.
T Consensus 292 ly~~~GKf~EA~~~~e~Al~I~~~---~~~~~~~--------------~v----~~~l~-~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 292 LYYKQGKFAEAEEYCERALEIYEK---LLGASHP--------------EV----AAQLS-ELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred HHhccCChHHHHHHHHHHHHHHHH---hhccChH--------------HH----HHHHH-HHHHHHHHhcchhHHHHHHH
Confidence 345669999999999999998544 2343332 11 23332 35777889999999999999
Q ss_pred HHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHH-----HHHHHHHHHHHhhcCCccc--
Q 008745 433 QMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ-----AMCHAYAAVSYFCIGDAES-- 505 (555)
Q Consensus 433 q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~-----~~~~lnlAi~yL~~g~~~s-- 505 (555)
....+....|.-...+.+-+..=+|--.+.+|.+++|+..|..|+...++..-+ ....=++|..|......+.
T Consensus 350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 888888877765555666777777888899999999999999998777544322 2233336677766333332
Q ss_pred --HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhh
Q 008745 506 --SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARL 551 (555)
Q Consensus 506 --~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~ 551 (555)
+.++.+.. +.|... +.++ - ..|-==|-+.-.+||+.+|-.
T Consensus 430 ~l~~~~~~i~-~~~g~~--~~~~--~-~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 430 QLFEEAKDIM-KLCGPD--HPDV--T-YTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHHHHHH-HHhCCC--CCch--H-HHHHHHHHHHHHcccHHHHHH
Confidence 44444443 333221 2222 1 111111233357888888743
No 79
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.93 E-value=0.95 Score=46.75 Aligned_cols=65 Identities=28% Similarity=0.362 Sum_probs=55.8
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhc--CChHHHHHHHHHHHHH
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHT--HNVNHAKSHLERSQLL 74 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T--~N~~~AkthLEka~~l 74 (555)
.++-+.|||-+-..+.+++|+-|||-++=.+| +.| +.+.|||.++|... +|...|+.|+++|..+
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P-~n~----l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQP-FNP----LYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC-CcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999999997766 455 57899999999875 5999999999999654
No 80
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=89.87 E-value=2.6 Score=49.28 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcC
Q 008745 425 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 501 (555)
Q Consensus 425 ~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g 501 (555)
..++.+|.++.+...+||+. +-.++++|-..+..|.+++|++++..++.+..... -+-.|.|.++.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~---~a~~~~a~~L~~~~ 134 (694)
T PRK15179 66 HKPAAALPELLDYVRRYPHT-----ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS---EAFILMLRGVKRQQ 134 (694)
T ss_pred cchHhhHHHHHHHHHhcccc-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhc
Confidence 35667788888889999976 67789999999999999999999999887776553 33444455554443
No 81
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=89.41 E-value=1.9 Score=44.37 Aligned_cols=118 Identities=22% Similarity=0.233 Sum_probs=83.2
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlA 494 (555)
+--....|++.+|...+..+... +....-.++++|..+.=.|++++|-.-|..|+++..+.+ ...-|++
T Consensus 107 gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p---~~~nNlg 175 (257)
T COG5010 107 GKNQIRNGNFGEAVSVLRKAARL--------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP---SIANNLG 175 (257)
T ss_pred HHHHHHhcchHHHHHHHHHHhcc--------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc---hhhhhHH
Confidence 44466789999999886655432 234567799999999999999999999999999887664 3445788
Q ss_pred HHHhhcCCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 495 VSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 495 i~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
++|+-.||.+... .++.|.+..+..-.-|++- .+ ++.-.|||+.||+.-
T Consensus 176 ms~~L~gd~~~A~---~lll~a~l~~~ad~~v~~N-LA-----l~~~~~g~~~~A~~i 224 (257)
T COG5010 176 MSLLLRGDLEDAE---TLLLPAYLSPAADSRVRQN-LA-----LVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHcCCHHHHH---HHHHHHHhCCCCchHHHHH-HH-----HHHhhcCChHHHHhh
Confidence 9988877755433 3345655555444445333 22 233479999999863
No 82
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.08 E-value=24 Score=39.34 Aligned_cols=180 Identities=11% Similarity=0.102 Sum_probs=111.3
Q ss_pred cHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch-hhhhhHHHHHHHHHHH
Q 008745 20 EIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF-ELKCRTFSLLSQCYHL 98 (555)
Q Consensus 20 ~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~-dlK~~a~sLLa~~y~~ 98 (555)
-+..|++++.=++.. |||++-.. -+ ++-.+-|-+.+-.-|.+|.. ..+|++-. .|=.-++++...-+.-
T Consensus 172 gv~~G~G~f~L~lSl---LPp~~~kl-----l~-~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~ 241 (468)
T PF10300_consen 172 GVYFGFGLFNLVLSL---LPPKVLKL-----LS-FVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLG 241 (468)
T ss_pred hHHHHHHHHHHHHHh---CCHHHHHH-----Hh-hcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcC
Confidence 577889999988866 47776432 22 24566788888888888754 44444333 3333333333333322
Q ss_pred c--CCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHH
Q 008745 99 V--GAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAI 176 (555)
Q Consensus 99 ~--~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~ 176 (555)
. +..+ ...+ .+.++.. .+.||...| |+|..+.++...||.+.|++.++......++-..-..-++|-++-
T Consensus 242 ~~~~~~~-~~~a-~~lL~~~---~~~yP~s~l---fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w 313 (468)
T PF10300_consen 242 IDGEDVP-LEEA-EELLEEM---LKRYPNSAL---FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAW 313 (468)
T ss_pred CcccCCC-HHHH-HHHHHHH---HHhCCCcHH---HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHH
Confidence 2 1111 1111 2333322 345777665 578899999999999999999998665555555555667888888
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHH-HHhhhhhhhhhh
Q 008745 177 LHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFY-RLRICDYKNAAH 238 (555)
Q Consensus 177 ~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy-~lrvc~y~~a~~ 238 (555)
+++.+++|++ |......+.+ .. .| -|.|| -+..|-|.+.++
T Consensus 314 ~~~~~~~w~~------A~~~f~~L~~----~s--~W---------Ska~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 314 CHMFQHDWEE------AAEYFLRLLK----ES--KW---------SKAFYAYLAAACLLMLGR 355 (468)
T ss_pred HHHHHchHHH------HHHHHHHHHh----cc--cc---------HHHHHHHHHHHHHHhhcc
Confidence 8988888775 3233333332 11 33 36777 777777777776
No 83
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=88.98 E-value=9.6 Score=40.89 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=100.0
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~ 82 (555)
+..++=+.|..-||++|++-.||+--++++++. .++-..-.++-.+||+=.+. .-=.|.||+.+.. +... .
T Consensus 67 ~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dlT~~qr~lAl~qL~~Dym~-aGl~DRAE~~f~~----L~de---~ 137 (389)
T COG2956 67 ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-DLTFEQRLLALQQLGRDYMA-AGLLDRAEDIFNQ----LVDE---G 137 (389)
T ss_pred hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHHH-hhhhhHHHHHHHH----Hhcc---h
Confidence 556777889999999999999999999999874 47777788888888874332 1234666665522 2221 2
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhh----hhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHH
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTS----SASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYV 158 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~----~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~ 158 (555)
|..=.|-.-|..+|.+...|. ||||.+. .+.+.|+ .=.-.|.-.+|+.+....|++.|.+.|.+++.
T Consensus 138 efa~~AlqqLl~IYQ~treW~-------KAId~A~~L~k~~~q~~~--~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 138 EFAEGALQQLLNIYQATREWE-------KAIDVAERLVKLGGQTYR--VEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred hhhHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHcCCccch--hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 455566677788999987664 5555544 3344444 44557778999999999999999999999765
Q ss_pred HH
Q 008745 159 CA 160 (555)
Q Consensus 159 ~A 160 (555)
..
T Consensus 209 a~ 210 (389)
T COG2956 209 AD 210 (389)
T ss_pred hC
Confidence 43
No 84
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.41 E-value=2.7 Score=47.59 Aligned_cols=110 Identities=14% Similarity=0.143 Sum_probs=69.8
Q ss_pred HhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 008745 352 ILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEAL 431 (555)
Q Consensus 352 i~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l 431 (555)
+..-.++.+.+|.+|++.++..|.+.+. + ++-|.. . +-|+.-+.-=-.++.+|+...
T Consensus 422 vvay~~~~y~~A~~~f~~~l~~ik~~~~------e--------~~~w~p--~-------~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 422 VVAYTYEEYPEALKYFQKALEVIKSVLN------E--------KIFWEP--T-------LNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred heeehHhhhHHHHHHHHHHHHHhhhccc------c--------ccchhH--H-------HHhHHHHHHHHhhHHHHHHHH
Confidence 3444566667777777777655443221 1 223411 1 112233333345677888887
Q ss_pred HHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh-HHHHHHHH
Q 008745 432 VQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-MQAMCHAY 492 (555)
Q Consensus 432 ~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~-~~~~~~ln 492 (555)
.+...++..+++ +|...|.+.+-+|+++.|..||..|+-+.++.. ..++..+.
T Consensus 479 q~aL~l~~k~~~--------~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 479 QKALLLSPKDAS--------THASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHcCCCchh--------HHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 777766666555 578899999999999999999999998887773 34444433
No 85
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=88.33 E-value=7.7 Score=43.83 Aligned_cols=64 Identities=20% Similarity=0.057 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCccc----HHHHHHhhCcc
Q 008745 448 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPV 516 (555)
Q Consensus 448 ~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s----~~~aL~li~P~ 516 (555)
..+.+|...|+.+...|++++|..+|+.|+.+-.+ .++-..++-+|...|+++. +++|+. ++|.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----~~a~~~lG~~~~~~G~~~eA~~~~~~A~~-L~P~ 485 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS----WLNYVLLGKVYELKGDNRLAADAYSTAFN-LRPG 485 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCC
Confidence 34678999999999999999999999999988753 4566778888888899764 566653 5664
No 86
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.33 E-value=8.1 Score=37.39 Aligned_cols=96 Identities=22% Similarity=0.094 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCccc----HHHHHHhhCcccccccccc
Q 008745 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 524 (555)
Q Consensus 449 ~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s----~~~aL~li~P~~~~~~~~~ 524 (555)
-...+.-.|-|....|++++|...|..+..-+++.....=..+|..-+.|-.+|.+. ++++-.+++.. .| .
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~---~d--~ 109 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG---GD--W 109 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc---ch--H
Confidence 346677899999999999999999999999888888777666665555555577543 45554444431 11 2
Q ss_pred chhHHHHHHHHHHHHHHhhcChhhhhh
Q 008745 525 GVREEASLHFAYGLLLMRQQDFQEARL 551 (555)
Q Consensus 525 ~~~~ka~~~fv~gl~~~~q~~~~eAr~ 551 (555)
.. ++=.--..|+..+.+++|.+|=.
T Consensus 110 ~~--~nrlk~~~gL~~l~~r~f~~AA~ 134 (177)
T PF10602_consen 110 ER--RNRLKVYEGLANLAQRDFKEAAE 134 (177)
T ss_pred HH--HHHHHHHHHHHHHHhchHHHHHH
Confidence 23 22245568999999999999854
No 87
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.23 E-value=1.2 Score=30.04 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 451 ~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
-+++.+|......|++++|..+|+.|+++.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 46788999999999999999999999987543
No 88
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=88.15 E-value=19 Score=35.17 Aligned_cols=118 Identities=17% Similarity=0.099 Sum_probs=78.3
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
-+..|...|..+-..|+...||+-|+.+.+.-| .+..-..+.+.+|...|. ++|.+.|..++++-. +.-|+...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P--~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi---~~yP~~~~ 77 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP--NSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFI---KLYPNSPK 77 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T--TSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH---HH-TT-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH---HHCCCCcc
Confidence 357788999999999999999999999998766 555666889999998875 578999999997763 44444443
Q ss_pred hhhhHHHHHHHHHHHcCCC-----chHhHHHHHHHHHhhhhhcccccchhH
Q 008745 84 LKCRTFSLLSQCYHLVGAI-----PPQKLILYKALDLTSSASQDVAVKLWS 129 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~~~~-----~~~k~~L~k~i~~s~~~~e~~~~~~W~ 129 (555)
+ =.+..+++.+++...+. .-++ -+++++..-..-.+.||...+.
T Consensus 78 ~-~~A~Y~~g~~~~~~~~~~~~~~~D~~-~~~~A~~~~~~li~~yP~S~y~ 126 (203)
T PF13525_consen 78 A-DYALYMLGLSYYKQIPGILRSDRDQT-STRKAIEEFEELIKRYPNSEYA 126 (203)
T ss_dssp H-HHHHHHHHHHHHHHHHHHH-TT---H-HHHHHHHHHHHHHHH-TTSTTH
T ss_pred h-hhHHHHHHHHHHHhCccchhcccChH-HHHHHHHHHHHHHHHCcCchHH
Confidence 3 24577777787765421 1122 2366666665555667766543
No 89
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=87.98 E-value=9 Score=41.95 Aligned_cols=120 Identities=22% Similarity=0.281 Sum_probs=88.4
Q ss_pred HhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHH
Q 008745 10 GLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTF 89 (555)
Q Consensus 10 ~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~ 89 (555)
+|-..+...+.+..|+.-++.+.+..| .+ -.-+|++++. .++..+|=.-++++. +..|.- +..-
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p----ev----~~~LA~v~l~-~~~E~~AI~ll~~aL---~~~p~d----~~LL 237 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP----EV----AVLLARVYLL-MNEEVEAIRLLNEAL---KENPQD----SELL 237 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC----cH----HHHHHHHHHh-cCcHHHHHHHHHHHH---HhCCCC----HHHH
Confidence 556778888899999999999998764 32 3347888886 467778877787774 333322 6666
Q ss_pred HHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhh
Q 008745 90 SLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQS 155 (555)
Q Consensus 90 sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~ 155 (555)
.+-|+.+.+.+....+..+.+++++.+=. . ...| +.||.++...||++.|+-.|..
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~lsP~---~--f~~W-----~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVELSPS---E--FETW-----YQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCch---h--HHHH-----HHHHHHHHhcCCHHHHHHHHhc
Confidence 67788888888887777777787776532 1 3355 5699999999999999988775
No 90
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=86.80 E-value=5.9 Score=42.33 Aligned_cols=98 Identities=13% Similarity=0.028 Sum_probs=77.4
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhh
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~ 86 (555)
-|+.-|+..-..+++..|+.+++.++...+.. +.+++.+|.+++ ...+.++|...+++|..+- |.. .
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-----~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~---P~~----~ 70 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-----AELYADRAQANI-KLGNFTEAVADANKAIELD---PSL----A 70 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC---cCC----H
Confidence 37778888889999999999999999876522 345677777765 4689999999999996642 222 3
Q ss_pred hHHHHHHHHHHHcCCCchHhHHHHHHHHHhh
Q 008745 87 RTFSLLSQCYHLVGAIPPQKLILYKALDLTS 117 (555)
Q Consensus 87 ~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~ 117 (555)
.++..++.+|++.|....+...+++++++.-
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 4688899999999999888888899988653
No 91
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.70 E-value=31 Score=35.47 Aligned_cols=133 Identities=17% Similarity=0.093 Sum_probs=81.9
Q ss_pred hccHHHHHHHHHHhhccC-CCCChhHHH--HHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhc-------CCcchhhhhh
Q 008745 18 KGEIGKAVKCLEAICQSH-VSFLPIIEV--KTRLRISTLLLKHTHNVNHAKSHLERSQLLLKA-------IPSCFELKCR 87 (555)
Q Consensus 18 ~~~i~~ai~CLeAvl~~~-~~l~P~~EA--~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~-------i~~~~dlK~~ 87 (555)
+|++..|..|+.-+=... ...|..+|- ++-+-+|.-+++--++.++|-.-|++|..++.. -+...++|+.
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 456677777776554432 112444443 333445555555555889999999999998633 2455599999
Q ss_pred HHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHH
Q 008745 88 TFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGY 157 (555)
Q Consensus 88 a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~ 157 (555)
.-.+|+++|...|.....-.+ .+.++... +.+++....+.+.+..-. ..+|...+-+.|....
T Consensus 86 iL~~La~~~l~~~~~~~~~ka-~~~l~~l~---~e~~~~~~~~~L~l~il~---~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKA-LNALRLLE---SEYGNKPEVFLLKLEILL---KSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHH-HHHHHHHH---HhCCCCcHHHHHHHHHHh---ccCChhHHHHHHHHHH
Confidence 999999999999876543222 34444443 346665555544443221 1677777777776533
No 92
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=86.11 E-value=11 Score=34.47 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=73.5
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
.+++.+|..+...|+...||..++.++..-+ .+....++.+++|+.|- ..-..++|...|+++. ...|. +++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL--~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~---~~~p~-~~~~ 74 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGL--SGADRRRALIQLASTLR-NLGRYDEALALLEEAL---EEFPD-DELN 74 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHH---HHCCC-cccc
Confidence 4678899999999999999999999999755 77777889999999987 7889999999998873 23232 2344
Q ss_pred hhHHHHHHHHHHHcCCCchH
Q 008745 86 CRTFSLLSQCYHLVGAIPPQ 105 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~~~~ 105 (555)
=....++|-+++..|....+
T Consensus 75 ~~l~~f~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 75 AALRVFLALALYNLGRPKEA 94 (120)
T ss_pred HHHHHHHHHHHHHCCCHHHH
Confidence 45556788888888866543
No 93
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=85.96 E-value=16 Score=35.22 Aligned_cols=101 Identities=11% Similarity=-0.041 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008745 340 SAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVEL 419 (555)
Q Consensus 340 ~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~l 419 (555)
+.+|++.|.+ ...|.+++|++.++-.... .|. ...=| -+..+|.=
T Consensus 36 ~~lY~~A~~l-----y~~G~l~~A~~~f~~L~~~----------Dp~-------~~~y~-------------~gLG~~~Q 80 (157)
T PRK15363 36 NTLYRYAMQL-----MEVKEFAGAARLFQLLTIY----------DAW-------SFDYW-------------FRLGECCQ 80 (157)
T ss_pred HHHHHHHHHH-----HHCCCHHHHHHHHHHHHHh----------Ccc-------cHHHH-------------HHHHHHHH
Confidence 3678886654 6789999999877433322 122 01112 24477888
Q ss_pred hhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh
Q 008745 420 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (555)
Q Consensus 420 t~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~ 483 (555)
.+++|.+|+..-.....+--..|+ .++-.|+....+|+.+.|..-|..|+..+...
T Consensus 81 ~~g~~~~AI~aY~~A~~L~~ddp~--------~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 81 AQKHWGEAIYAYGRAAQIKIDAPQ--------APWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHhhHHHHHHHHHHHHhcCCCCch--------HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 899999999886666555444444 46778999999999999999999999988433
No 94
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.79 E-value=3.5 Score=42.46 Aligned_cols=104 Identities=11% Similarity=0.040 Sum_probs=77.5
Q ss_pred HHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcc
Q 008745 43 EVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122 (555)
Q Consensus 43 EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~ 122 (555)
+...-...|--|+....+.++|...+++.. +.-|.. ...=.+++.|+++|+..|....+.....+ ..+.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl---~~yP~s-~~a~~A~y~LG~~y~~~g~~~~A~~~f~~-------vv~~ 209 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFV---KKYPDS-TYQPNANYWLGQLNYNKGKKDDAAYYFAS-------VVKN 209 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HHCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHH-------HHHH
Confidence 457778888877666678889999887663 222221 22236889999999999977644333333 3456
Q ss_pred cccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHH
Q 008745 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGY 157 (555)
Q Consensus 123 ~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~ 157 (555)
||...|..-.++.++.++...||+..|...++...
T Consensus 210 yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 210 YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 78889999999999999999999999999999754
No 95
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=85.47 E-value=7.4 Score=42.61 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=77.2
Q ss_pred HHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHh
Q 008745 54 LLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFN 133 (555)
Q Consensus 54 L~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~ 133 (555)
++..|.+.+.|...||+- .+.- -+...+||++|...|..-.+-+++.++|.. .| ..+-++
T Consensus 178 ~l~~t~~~~~ai~lle~L---~~~~-------pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-------~p---~d~~LL 237 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKL---RERD-------PEVAVLLARVYLLMNEEVEAIRLLNEALKE-------NP---QDSELL 237 (395)
T ss_pred HHhhcccHHHHHHHHHHH---HhcC-------CcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-------CC---CCHHHH
Confidence 457788999999999873 2221 347889999999988554333445555532 22 226777
Q ss_pred HHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcc
Q 008745 134 SQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQ 183 (555)
Q Consensus 134 fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~ 183 (555)
..-|..+...+|++.|+..+++...++ -...+..+.|+++++.+-+
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~ls----P~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVELS----PSEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC----chhHHHHHHHHHHHHhcCC
Confidence 788888999999999999988866554 4456788999999999965
No 96
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.18 E-value=17 Score=38.11 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCC-cccHHHHHHhhCcccccc
Q 008745 453 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD-AESSSQAIDLIGPVYQMK 520 (555)
Q Consensus 453 ~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~-~~s~~~aL~li~P~~~~~ 520 (555)
.+=....++.+|++++|+....+|+..=.+ .--.++ |+.+.-+..|. ++..++-+..+.-.+..|
T Consensus 210 lnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~--Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 210 LNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLA--NLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHH--HHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 333345677889999999999998743222 222333 33333334465 455666666555443333
No 97
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.12 E-value=2 Score=29.12 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 008745 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (555)
Q Consensus 451 ~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~ 481 (555)
.+++..|.+....|++++|...|+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4688999999999999999999999988755
No 98
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.81 E-value=11 Score=37.32 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=86.5
Q ss_pred hcCHHHHHHHHHHHHHHHH-hccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh-HHHHHHHHHHHHHh
Q 008745 421 RSGFVEAQEALVQMKNWFI-RFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-MQAMCHAYAAVSYF 498 (555)
Q Consensus 421 ~~~~~~A~~~l~q~~~~~~-~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~-~~~~~~lnlAi~yL 498 (555)
.+..++|+..+.++..... .||.+ ..|=.|-..-.-|+..+|..-|.++.+-+..|. .|+++-|-+|..++
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvL-------A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVL-------ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHH-------HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 3566788888777776643 34543 455567777889999999999999998888884 77999999887763
Q ss_pred hcCCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhh
Q 008745 499 CIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARL 551 (555)
Q Consensus 499 ~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~ 551 (555)
|..|+...-.+++|.-. | -... |..+-=.-||...+-||+..||.
T Consensus 144 ---D~gsy~dV~srvepLa~--d-~n~m--R~sArEALglAa~kagd~a~A~~ 188 (221)
T COG4649 144 ---DNGSYDDVSSRVEPLAG--D-GNPM--RHSAREALGLAAYKAGDFAKAKS 188 (221)
T ss_pred ---ccccHHHHHHHhhhccC--C-CChh--HHHHHHHHhHHHHhccchHHHHH
Confidence 66778888888899722 2 2233 44444567999999999999985
No 99
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.77 E-value=6.7 Score=40.14 Aligned_cols=94 Identities=18% Similarity=0.269 Sum_probs=68.0
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlA 494 (555)
.+-.+-.||+..|.+.|.... +.-|.- ...|.++.+|.+..|..+.|-.-|+.|+++..+.. ++-|=+.+
T Consensus 42 al~YL~~gd~~~A~~nlekAL---~~DPs~-----~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G--dVLNNYG~ 111 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKAL---EHDPSY-----YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG--DVLNNYGA 111 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHH---HhCccc-----HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc--chhhhhhH
Confidence 555788999999998876654 445553 45688999999999999999999999998765543 44444455
Q ss_pred HHHhhcCCccc----HHHHHHhhCccccccc
Q 008745 495 VSYFCIGDAES----SSQAIDLIGPVYQMKD 521 (555)
Q Consensus 495 i~yL~~g~~~s----~~~aL~li~P~~~~~~ 521 (555)
.+.=. |.+++ ++++++ .|.|-.++
T Consensus 112 FLC~q-g~~~eA~q~F~~Al~--~P~Y~~~s 139 (250)
T COG3063 112 FLCAQ-GRPEEAMQQFERALA--DPAYGEPS 139 (250)
T ss_pred HHHhC-CChHHHHHHHHHHHh--CCCCCCcc
Confidence 55433 56664 677775 78766653
No 100
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.55 E-value=2.6 Score=28.74 Aligned_cols=32 Identities=22% Similarity=0.168 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 451 ~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
.+.+.+|......|++++|...|+.|+++-++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46789999999999999999999999987543
No 101
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.33 E-value=7.4 Score=33.43 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=50.2
Q ss_pred CCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHH
Q 008745 100 GAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMF 171 (555)
Q Consensus 100 ~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~ 171 (555)
|....+...|.+..|.+...........+.+. .+.+|.++..-|++..|++.++.+.++|++.+|...-.+
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~a-ll~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~ 82 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYA-LLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAY 82 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 33455555678888887654332211223333 356889999999999999999999999999999754433
No 102
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=82.64 E-value=3.6 Score=32.09 Aligned_cols=55 Identities=24% Similarity=0.160 Sum_probs=40.9
Q ss_pred hhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 420 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 420 t~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
-.++|++|.+.+.++. ..+|.- +-+.+.+|.+....|++++|...|..+++...+
T Consensus 3 ~~~~~~~A~~~~~~~l---~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKAL---QRNPDN-----PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHH---HHTTTS-----HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHH---HHCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4678888888866664 455652 445667888999999999999999988877666
No 103
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=82.48 E-value=40 Score=37.60 Aligned_cols=83 Identities=18% Similarity=0.093 Sum_probs=64.9
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlA 494 (555)
.-+....|+.++|++.+..+.+.-...|+ +.....+=+|.+.+..+++++|...|..-.+ .|+-.+++..--.|
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q----l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~--~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQ----LHHLCYFELAWCHMFQHDWEEAAEYFLRLLK--ESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHh----HHHHHHHHHHHHHHHHchHHHHHHHHHHHHh--ccccHHHHHHHHHH
Confidence 66678899999999998877755455555 4567788899999999999999999997765 44445777777777
Q ss_pred HHHhhcCCc
Q 008745 495 VSYFCIGDA 503 (555)
Q Consensus 495 i~yL~~g~~ 503 (555)
..|+..++.
T Consensus 348 ~c~~~l~~~ 356 (468)
T PF10300_consen 348 ACLLMLGRE 356 (468)
T ss_pred HHHHhhccc
Confidence 777777765
No 104
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.14 E-value=69 Score=36.35 Aligned_cols=107 Identities=16% Similarity=0.113 Sum_probs=64.9
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhc--ccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008745 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKL--GITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (555)
Q Consensus 345 Lvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl--~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~ 422 (555)
=||-+..-.+.-++.|++|.|++.++++. +.- +|.-+ -+.+-|+. +++++ -+.
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~L-----E~~~~~~~v~--~~plV~Ka-----------~l~~q-------wk~ 517 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIEL-----EPREHLIIVN--AAPLVHKA-----------LLVLQ-------WKE 517 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHhh-----cccccccccc--chhhhhhh-----------Hhhhc-------hhh
Confidence 46667788888999999999999999886 321 12111 11111111 11111 124
Q ss_pred CHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh
Q 008745 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (555)
Q Consensus 423 ~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~ 484 (555)
|+..|.+-|.... +--|+--. ..--+|++-.=.|++++|...|..++.++++.+
T Consensus 518 d~~~a~~Ll~KA~---e~Dpkce~-----A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 518 DINQAENLLRKAI---ELDPKCEQ-----AYETLAQFELQRGKIDEAIELFEKSAQLARTES 571 (606)
T ss_pred hHHHHHHHHHHHH---ccCchHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence 5555555544433 33354221 222357778889999999999999998887664
No 105
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=81.55 E-value=1.3e+02 Score=36.26 Aligned_cols=312 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhh
Q 008745 40 PIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSA 119 (555)
Q Consensus 40 P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~ 119 (555)
+-.|++..|..|+.||-+ .|+++|...|.-. .|+-|+. +.+++-|++||.+.|... |
T Consensus 135 l~~~l~~ll~eAN~lfar-g~~eeA~~i~~Ev---Ikqdp~~----~~ay~tL~~IyEqrGd~e-------K-------- 191 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFAR-GDLEEAEEILMEV---IKQDPRN----PIAYYTLGEIYEQRGDIE-------K-------- 191 (895)
T ss_pred cCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHH---HHhCccc----hhhHHHHHHHHHHcccHH-------H--------
Q ss_pred hcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 008745 120 SQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDR 199 (555)
Q Consensus 120 ~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~ 199 (555)
.+.|-+.-+|..-+|+. .-+.+++.-..+-.
T Consensus 192 -----------~l~~~llAAHL~p~d~e----------------------~W~~ladls~~~~~---------------- 222 (895)
T KOG2076|consen 192 -----------ALNFWLLAAHLNPKDYE----------------------LWKRLADLSEQLGN---------------- 222 (895)
T ss_pred -----------HHHHHHHHHhcCCCChH----------------------HHHHHHHHHHhccc----------------
Q ss_pred HHHhcCccccccccchhhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHh-HHHHHHHHHhhhhHHHHhhhcCCCCCCh
Q 008745 200 VWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKAD-KQKMQEIQQLSSELDALNQSLSRPDLPS 278 (555)
Q Consensus 200 l~~~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a~~~v~~ld~~~~~~-~q~~~~i~~l~~~L~~v~~~L~~~~~~~ 278 (555)
-.+....|.+.++ +++..... -.++.--++.+..-..+.+-+
T Consensus 223 -----------i~qA~~cy~rAI~-------------------~~p~n~~~~~ers~L~~~~G~~~~Am~~f~------- 265 (895)
T KOG2076|consen 223 -----------INQARYCYSRAIQ-------------------ANPSNWELIYERSSLYQKTGDLKRAMETFL------- 265 (895)
T ss_pred -----------HHHHHHHHHHHHh-------------------cCCcchHHHHHHHHHHHHhChHHHHHHHHH-------
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCcccccCcccccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCC
Q 008745 279 RERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKG 358 (555)
Q Consensus 279 ~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg 358 (555)
+..+. .||.+++|. -.+.+-+.=..
T Consensus 266 --------------~l~~~-------------------------------~p~~d~er~-----~d~i~~~~~~~----- 290 (895)
T KOG2076|consen 266 --------------QLLQL-------------------------------DPPVDIERI-----EDLIRRVAHYF----- 290 (895)
T ss_pred --------------HHHhh-------------------------------CCchhHHHH-----HHHHHHHHHHH-----
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--
Q 008745 359 LFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKN-- 436 (555)
Q Consensus 359 ~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~-- 436 (555)
.+..+. +.+++.+.+.++ .-.+.+...++ .+| +-+-+--..|+.|...|..+++
T Consensus 291 --~~~~~~-e~a~~~le~~~s--~~~~~~~~ed~--------ni~-----------ael~l~~~q~d~~~~~i~~~~~r~ 346 (895)
T KOG2076|consen 291 --ITHNER-ERAAKALEGALS--KEKDEASLEDL--------NIL-----------AELFLKNKQSDKALMKIVDDRNRE 346 (895)
T ss_pred --HHhhHH-HHHHHHHHHHHh--hccccccccHH--------HHH-----------HHHHHHhHHHHHhhHHHHHHhccc
Q ss_pred --------------------HHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 008745 437 --------------------WFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS 496 (555)
Q Consensus 437 --------------------~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~ 496 (555)
.|..--.+-..... ++...|+.-.-++...+++.||. .-.+...-+..-+..-+.
T Consensus 347 ~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l----~~~n~~~~d~~dL~~d~a 421 (895)
T KOG2076|consen 347 SEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFL----VEDNVWVSDDVDLYLDLA 421 (895)
T ss_pred cCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHH----HHhcCChhhhHHHHHHHH
Q ss_pred HhhcCCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhh
Q 008745 497 YFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEAR 550 (555)
Q Consensus 497 yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr 550 (555)
-.. .+.+-...|+++..|.+....... +.+++-.|=-.|-++.+.+|.
T Consensus 422 ~al-~~~~~~~~Al~~l~~i~~~~~~~~-----~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 422 DAL-TNIGKYKEALRLLSPITNREGYQN-----AFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred HHH-HhcccHHHHHHHHHHHhcCccccc-----hhhhHHHHHHHHHHhhHHHHH
No 106
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=79.78 E-value=6.7 Score=44.32 Aligned_cols=67 Identities=16% Similarity=0.027 Sum_probs=56.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHH
Q 008745 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 489 (555)
Q Consensus 414 ~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~ 489 (555)
.++..+..++|++|...+.+..+.- |. ...+.++|..+...|++++|..+|..|+++..+.+.+.+|
T Consensus 426 la~~~~~~g~~~~A~~~l~rAl~L~---ps------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~ 492 (517)
T PRK10153 426 LAVQALVKGKTDEAYQAINKAIDLE---MS------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWI 492 (517)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC---CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3566778899999999977765543 32 4689999999999999999999999999999998877666
No 107
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=79.65 E-value=7.8 Score=30.14 Aligned_cols=49 Identities=27% Similarity=0.373 Sum_probs=39.0
Q ss_pred hhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHH
Q 008745 17 NKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERS 71 (555)
Q Consensus 17 ~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka 71 (555)
..|++..|+..++.+++..| - ...+++.+|.++++- .+.++|+..|++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p---~--~~~~~~~la~~~~~~-g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP---D--NPEARLLLAQCYLKQ-GQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT---T--SHHHHHHHHHHHHHT-T-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHCC---C--CHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 46789999999999998765 2 445677899988864 8999999999776
No 108
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=78.95 E-value=1.1e+02 Score=33.76 Aligned_cols=166 Identities=13% Similarity=0.161 Sum_probs=119.2
Q ss_pred HHhHHHHHhhccHHHHHHHHHHhhc---cCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCC-cchhh
Q 008745 9 WGLADYHENKGEIGKAVKCLEAICQ---SHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIP-SCFEL 84 (555)
Q Consensus 9 l~lAe~fr~~~~i~~ai~CLeAvl~---~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~-~~~dl 84 (555)
+.|+..|-..+-+-+++.=+|.+++ ..- -|..|-++..=||++. ..-.+.+.|-+.+-||+.+.++.. .---+
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~--D~~LElqvcv~Lgslf-~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNND--DAMLELQVCVSLGSLF-AQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccC--CceeeeehhhhHHHHH-HHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 3455555555555556666666664 333 5788999999999864 444555678888999999988875 33377
Q ss_pred hhhHHHH--HHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhh
Q 008745 85 KCRTFSL--LSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (555)
Q Consensus 85 K~~a~sL--La~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~ 162 (555)
||++.++ +|--|.+.|.-..++..-..+..++.. .|.+ .-+-+=+.-+|+|+-.-||.+.|+.--+.....-+.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~--~Gdr--a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ--HGDR--ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH--hCCh--HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 8887666 467788888776666665666666643 2322 555566778899999999999999999988888888
Q ss_pred hCC--hhHHHHHHHHHHHHHh
Q 008745 163 ISY--PDLQMFFATAILHVHL 181 (555)
Q Consensus 163 ~~~--~~~~v~fals~~~~~L 181 (555)
.|| -+|+++--.+++...+
T Consensus 279 ~gdrmgqv~al~g~Akc~~~~ 299 (518)
T KOG1941|consen 279 LGDRMGQVEALDGAAKCLETL 299 (518)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 888 5778888888887755
No 109
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=78.83 E-value=99 Score=34.05 Aligned_cols=133 Identities=11% Similarity=0.089 Sum_probs=89.9
Q ss_pred HHHHHhhcCHHHHH-HHHHHHHHHHHhccchhh-hhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh-----hHHH
Q 008745 415 VAVELTRSGFVEAQ-EALVQMKNWFIRFPTILQ-ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-----SMQA 487 (555)
Q Consensus 415 v~~~lt~~~~~~A~-~~l~q~~~~~~~~P~ll~-~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~-----~~~~ 487 (555)
.+.++.|++-..+. ..--+.+.|+-..|.+-. ...-+.+-..|.---|+|-|+.++.-|+.|+|-+++. +++.
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 55566665433221 122345666777775443 1222455557777788999999999999999987655 4666
Q ss_pred HHHHHHHHHHhhcCCccc---HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhh
Q 008745 488 MCHAYAAVSYFCIGDAES---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARL 551 (555)
Q Consensus 488 ~~~lnlAi~yL~~g~~~s---~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~ 551 (555)
.+.|-.-...+++ ...+ ..++.++|+.. ...|-+..- ++.++|--+..+..+|++-+|+.
T Consensus 165 cv~Lgslf~~l~D-~~Kal~f~~kA~~lv~s~-~l~d~~~ky--r~~~lyhmaValR~~G~LgdA~e 227 (518)
T KOG1941|consen 165 CVSLGSLFAQLKD-YEKALFFPCKAAELVNSY-GLKDWSLKY--RAMSLYHMAVALRLLGRLGDAME 227 (518)
T ss_pred hhhHHHHHHHHHh-hhHHhhhhHhHHHHHHhc-CcCchhHHH--HHHHHHHHHHHHHHhcccccHHH
Confidence 6666655555552 2223 68999999987 545544444 88999999999999999998875
No 110
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.07 E-value=4.3 Score=24.94 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 008745 452 IEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (555)
Q Consensus 452 i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~ 481 (555)
.++..|...+.+|+++.|...|..+++...
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 567889999999999999999999987543
No 111
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.31 E-value=30 Score=29.61 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=48.7
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhccchh-hhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh
Q 008745 418 ELTRSGFVEAQEALVQMKNWFIRFPTIL-QACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (555)
Q Consensus 418 ~lt~~~~~~A~~~l~q~~~~~~~~P~ll-~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~ 484 (555)
.+-.+|+..|++.|.+.-+.+...-... ...-+....-.|......|++++|...+.+|+++++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 6778999999999999999876653221 111122233366777888999999999999998875443
No 112
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.14 E-value=23 Score=36.41 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=75.3
Q ss_pred ChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhh
Q 008745 39 LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSS 118 (555)
Q Consensus 39 ~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~ 118 (555)
-+.+-+.+|++||-=.++ -.|...||..||+| ++.=|+. +.+++.+|.+|.+.|....+...-+|++.+.-+
T Consensus 30 ~~~~aa~arlqLal~YL~-~gd~~~A~~nlekA---L~~DPs~----~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 30 DRNEAAKARLQLALGYLQ-QGDYAQAKKNLEKA---LEHDPSY----YLAHLVRAHYYQKLGENDLADESYRKALSLAPN 101 (250)
T ss_pred cHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH---HHhCccc----HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence 457888999999977765 46899999999999 4554554 568999999999999998888888999998766
Q ss_pred hhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhh
Q 008745 119 ASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQS 155 (555)
Q Consensus 119 ~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~ 155 (555)
.++-..+.-| .+...|.++.|-..++.
T Consensus 102 ~GdVLNNYG~----------FLC~qg~~~eA~q~F~~ 128 (250)
T COG3063 102 NGDVLNNYGA----------FLCAQGRPEEAMQQFER 128 (250)
T ss_pred ccchhhhhhH----------HHHhCCChHHHHHHHHH
Confidence 5555554444 13446677777666665
No 113
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=76.66 E-value=90 Score=31.61 Aligned_cols=114 Identities=12% Similarity=0.086 Sum_probs=76.1
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
..+...|+.+-..+++..|+.=++.+....| -+..-..+.+.+|.++|. .++.++|.+.+++...+ -|+-.+.-
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP--~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~---~P~~~~~~ 106 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYP--FGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRL---NPTHPNID 106 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHh---CcCCCchH
Confidence 3455677888888899999999999999877 555556678999999988 68899999999998543 34444332
Q ss_pred hhHHHHHHHHHHHcCCC---------chHh--HHHHHHHHHhhhhhcccccc
Q 008745 86 CRTFSLLSQCYHLVGAI---------PPQK--LILYKALDLTSSASQDVAVK 126 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~---------~~~k--~~L~k~i~~s~~~~e~~~~~ 126 (555)
.+..+++-++...+.. ...+ ...+++++.-..-++.||..
T Consensus 107 -~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S 157 (243)
T PRK10866 107 -YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS 157 (243)
T ss_pred -HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence 2345666665444310 1111 12356666555556667665
No 114
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.63 E-value=7.9 Score=38.72 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=62.9
Q ss_pred HHHhhcC-ChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHH
Q 008745 53 LLLKHTH-NVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCN 131 (555)
Q Consensus 53 lL~e~T~-N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~ 131 (555)
++|.+|- |++.|+..+.+ +.+-+.+++ -+++..||-.|.+.++.. .+++|.++++++..+ +-..+-|
T Consensus 113 lYy~Wsr~~d~~A~~~fL~----~E~~~~l~t--~elq~aLAtyY~krD~~K-t~~ll~~~L~l~~~~--~~~n~ei--- 180 (203)
T PF11207_consen 113 LYYHWSRFGDQEALRRFLQ----LEGTPELET--AELQYALATYYTKRDPEK-TIQLLLRALELSNPD--DNFNPEI--- 180 (203)
T ss_pred HHHHhhccCcHHHHHHHHH----HcCCCCCCC--HHHHHHHHHHHHccCHHH-HHHHHHHHHHhcCCC--CCCCHHH---
Confidence 6788888 99999999844 466677776 578889999999877654 567889999988642 1333445
Q ss_pred HhHHHHHHhhhcCChHHH
Q 008745 132 FNSQLANAFIIEGDYQSS 149 (555)
Q Consensus 132 f~fqlA~~~~~~~D~~~A 149 (555)
+..||+++...|++..|
T Consensus 181 -l~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 181 -LKSLASIYQKLKNYEQA 197 (203)
T ss_pred -HHHHHHHHHHhcchhhh
Confidence 45688899888888765
No 115
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=76.55 E-value=23 Score=37.25 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=68.1
Q ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcccHHHHH
Q 008745 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAI 510 (555)
Q Consensus 431 l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s~~~aL 510 (555)
+..+++-.+.+|.--+ =-+++|.+.+-+|+++.|..-|..|.++..++.-. +..+.-++.| . .++.-..++-
T Consensus 142 ~a~Le~~L~~nP~d~e-----gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~-~~g~aeaL~~-~-a~~~~ta~a~ 213 (287)
T COG4235 142 IARLETHLQQNPGDAE-----GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI-LLGLAEALYY-Q-AGQQMTAKAR 213 (287)
T ss_pred HHHHHHHHHhCCCCch-----hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH-h-cCCcccHHHH
Confidence 4556666788887522 25789999999999999999999999998766533 2233334444 3 2332222222
Q ss_pred HhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhh
Q 008745 511 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARL 551 (555)
Q Consensus 511 ~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~ 551 (555)
++++-..+.- -..+ -++|..|..+|-||||.+|..
T Consensus 214 ~ll~~al~~D--~~~i----ral~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 214 ALLRQALALD--PANI----RALSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred HHHHHHHhcC--CccH----HHHHHHHHHHHHcccHHHHHH
Confidence 2223222221 2233 346777889999999999853
No 116
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.68 E-value=1.5e+02 Score=35.76 Aligned_cols=184 Identities=12% Similarity=-0.004 Sum_probs=94.5
Q ss_pred chhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008745 339 KSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVE 418 (555)
Q Consensus 339 k~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~ 418 (555)
..++++=.-.+..++...+|.+++|+++...++.+.-+.-...+++ .+=...-+.
T Consensus 453 ~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~-------------------------~~sv~~~a~ 507 (894)
T COG2909 453 QGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV-------------------------ALSVLGEAA 507 (894)
T ss_pred hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh-------------------------hhhhhhHHH
Confidence 4556666666778889999999999999988888732211111111 111123344
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhC----------------------------------
Q 008745 419 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG---------------------------------- 464 (555)
Q Consensus 419 lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g---------------------------------- 464 (555)
.++|+++.|.-.+++..++-+++-.-+ ++-+.++....++..-|
T Consensus 508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~--l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 508 HIRGELTQALALMQQAEQMARQHDVYH--LALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHhchHHHHHHHHHHHHHHHHHcccHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 455555555555555555544432110 11112221111111111
Q ss_pred ------CHHHHHHHHHHHHhhc--CChhHHHHHHH--HHHHHHhhcCCcccHHHHHHhhCccccccccccchhHHHHHHH
Q 008745 465 ------CYSEAAFHYVEAAKIT--ESKSMQAMCHA--YAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHF 534 (555)
Q Consensus 465 ------~~~~A~~~F~~A~k~t--~s~~~~~~~~l--nlAi~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~f 534 (555)
+++.++.-+...++.. ..+.-.+.|.. ++|-.++..||.+....-++-+.-.+....--+-. .|+++-
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~--~a~~~~ 663 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY--LAAAYK 663 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH--HHHHHH
Confidence 1333333333222222 22223334433 78888888899876333333333222221111233 678888
Q ss_pred HHHHHHHhhcChhhhhh
Q 008745 535 AYGLLLMRQQDFQEARL 551 (555)
Q Consensus 535 v~gl~~~~q~~~~eAr~ 551 (555)
|+-..-..|||..+|..
T Consensus 664 v~~~lwl~qg~~~~a~~ 680 (894)
T COG2909 664 VKLILWLAQGDKELAAE 680 (894)
T ss_pred hhHHHhcccCCHHHHHH
Confidence 99999999999888864
No 117
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=74.90 E-value=53 Score=31.35 Aligned_cols=108 Identities=12% Similarity=0.038 Sum_probs=76.5
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008745 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (555)
Q Consensus 351 vi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~ 430 (555)
.|...-.|..+.|......++.. .|. +++.|.+ .+-..=..++.++|.+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l----------~P~------------raSayNN--------RAQa~RLq~~~e~ALdD 99 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL----------APE------------RASAYNN--------RAQALRLQGDDEEALDD 99 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh----------ccc------------chHhhcc--------HHHHHHHcCChHHHHHH
Confidence 45555667677666555555544 233 2345532 22223345899999999
Q ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 008745 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 492 (555)
Q Consensus 431 l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~ln 492 (555)
|....++-- |+. ...|+.+.-+|+.+--.|+.+.|-+-|.+|..+-+++.-+-++.+|
T Consensus 100 Ln~AleLag--~~t--rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lN 157 (175)
T KOG4555|consen 100 LNKALELAG--DQT--RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELN 157 (175)
T ss_pred HHHHHHhcC--ccc--hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcC
Confidence 988877643 332 3688999999999999999999999999999998888777776666
No 118
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.88 E-value=43 Score=36.75 Aligned_cols=115 Identities=20% Similarity=0.192 Sum_probs=82.8
Q ss_pred CCCh-hHHHHHHHHh-hHHHHhhcCChHHHHHHHHHHHHHHhcCCc--------chhhhhhHHHHHHHHHHHcCCCchHh
Q 008745 37 SFLP-IIEVKTRLRI-STLLLKHTHNVNHAKSHLERSQLLLKAIPS--------CFELKCRTFSLLSQCYHLVGAIPPQK 106 (555)
Q Consensus 37 ~l~P-~~EA~~rLrl-a~lL~e~T~N~~~AkthLEka~~l~k~i~~--------~~dlK~~a~sLLa~~y~~~~~~~~~k 106 (555)
++.+ ++++-++.|- |+.+|. -.++..|..-++||...+.--.. ..++|.-.+.=||=||.|.+....+.
T Consensus 199 ~~~~e~l~~A~~~ke~Gn~~fK-~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai 277 (397)
T KOG0543|consen 199 MFAEERLEAADRKKERGNVLFK-EGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAI 277 (397)
T ss_pred cchHHHHHHHHHHHHhhhHHHh-hchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHH
Confidence 3445 6666666665 444444 45899999999999776654332 33889999999999999999776554
Q ss_pred HHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhh
Q 008745 107 LILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (555)
Q Consensus 107 ~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~ 162 (555)
..-.|.+++= .=.+.=+|+++.++..-+||+.|...+++...+.=.
T Consensus 278 ~~c~kvLe~~----------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 278 ESCNKVLELD----------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHHHHHhcC----------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 4445555532 223456788999999999999999999997766533
No 119
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.43 E-value=76 Score=31.90 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH-HHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008745 341 AVYALVDLMVVILGRPKGLFKECMQRIQSGMQT-IQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVEL 419 (555)
Q Consensus 341 ~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~-i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~l 419 (555)
.--+|+-+.-.-.-.-+|.+++|+.-++.++.+ -|+.|+.+ .=..+.-+.+
T Consensus 86 ~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l----------------------------~~lRLArvq~ 137 (207)
T COG2976 86 IYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL----------------------------AALRLARVQL 137 (207)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH----------------------------HHHHHHHHHH
Confidence 344566666666667889999999999888844 33333211 1112234455
Q ss_pred hhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 008745 420 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 492 (555)
Q Consensus 420 t~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~ln 492 (555)
-.+.+++|.+.|....+- ...+.+.-++|=+..+.|+-++|.+-|..|+..-.++..+.+.++-
T Consensus 138 q~~k~D~AL~~L~t~~~~---------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lqmK 201 (207)
T COG2976 138 QQKKADAALKTLDTIKEE---------SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREILQMK 201 (207)
T ss_pred HhhhHHHHHHHHhccccc---------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHHHHhH
Confidence 668899999887665543 3688899999999999999999999999999876888888777654
No 120
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=72.58 E-value=13 Score=29.29 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=44.5
Q ss_pred hHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHH
Q 008745 11 LADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQL 73 (555)
Q Consensus 11 lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~ 73 (555)
|++-....++...|++|++.+++..| . ....++.+|.++ ..++++++|...|+++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p----~-~~~~~~~~a~~~-~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDP----D-DPELWLQRARCL-FQLGRYEEALEDLERALE 57 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCc----c-cchhhHHHHHHH-HHhccHHHHHHHHHHHHH
Confidence 34556778899999999999998865 1 555666666655 567899999999999864
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=72.55 E-value=73 Score=37.54 Aligned_cols=84 Identities=13% Similarity=0.082 Sum_probs=54.0
Q ss_pred hcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhc
Q 008745 421 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 500 (555)
Q Consensus 421 ~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~ 500 (555)
..++++|...+ .......|.- +..+++.|...+.+|.+++|...|..++. ..++ ..-+-++.+..+...
T Consensus 133 ~~~~eeA~~~~---~~~l~~~p~~-----~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~-~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 133 QQGIEAGRAEI---ELYFSGGSSS-----AREILLEAKSWDEIGQSEQADACFERLSR--QHPE-FENGYVGWAQSLTRR 201 (694)
T ss_pred hccHHHHHHHH---HHHhhcCCCC-----HHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCC-cHHHHHHHHHHHHHc
Confidence 45666766553 3345555653 67789999999999999999999998886 2221 122334555565555
Q ss_pred CCccc----HHHHHHhhCc
Q 008745 501 GDAES----SSQAIDLIGP 515 (555)
Q Consensus 501 g~~~s----~~~aL~li~P 515 (555)
|+.+. +.+++++.+|
T Consensus 202 G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 202 GALWRARDVLQAGLDAIGD 220 (694)
T ss_pred CCHHHHHHHHHHHHHhhCc
Confidence 66442 5666666555
No 122
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=72.39 E-value=97 Score=30.15 Aligned_cols=133 Identities=14% Similarity=0.189 Sum_probs=72.6
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlA 494 (555)
+.-.+-.|+|.+|++.+..+.+- +|... ..+...+.+|--....|+++.|...|..-++.-.+-+..+-+-.-.+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~---~P~s~--~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDR---YPNSP--YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH----TTST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH---CCCCh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 55678899999999998777655 56543 34555666777777889999999999998877666554444433333
Q ss_pred HHHhh--------cCCcccHHHHHHhhCcccc-ccccc---------cchhHHH-HHHHHHHHHHHhhcChhhhhhh
Q 008745 495 VSYFC--------IGDAESSSQAIDLIGPVYQ-MKDTI---------NGVREEA-SLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 495 i~yL~--------~g~~~s~~~aL~li~P~~~-~~~~~---------~~~~~ka-~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
.++.. ..|.....+++...+-+.+ -|+|. .-+|++- .--|--|-.-++.|++.-|..+
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 33322 2333345666555544422 22221 2222222 1223335556667777666543
No 123
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.26 E-value=1e+02 Score=37.09 Aligned_cols=164 Identities=19% Similarity=0.126 Sum_probs=115.9
Q ss_pred HHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhc-CChHHHHHHHHHHHHHHhcC--Ccchhh
Q 008745 8 LWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHT-HNVNHAKSHLERSQLLLKAI--PSCFEL 84 (555)
Q Consensus 8 Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T-~N~~~AkthLEka~~l~k~i--~~~~dl 84 (555)
|-..++.+...++|.+=..|+..+ | .|.+.-.-+|.+-.+=.-.. .-.++|++.+++...-++.. ....++
T Consensus 383 le~~~~~L~~~~~lsll~~~~~~l----P--~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l 456 (894)
T COG2909 383 LEQLEWQLFNGSELSLLLAWLKAL----P--AELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDL 456 (894)
T ss_pred HHhhhhhhhcccchHHHHHHHHhC----C--HHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhH
Confidence 334455555556666655555443 3 45555556777776654444 48999999999887666653 334466
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhH--HHHHHhhhcCChHHHHHHHhhHHHHHhh
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNS--QLANAFIIEGDYQSSISALQSGYVCATE 162 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~f--qlA~~~~~~~D~~~A~~~L~~g~~~A~~ 162 (555)
.-+.+-|=|.+-...|.. .++++++...-+..+...|..+..- -.++++++.||+..|....+..-.+|++
T Consensus 457 ~ae~~aL~a~val~~~~~-------e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 457 LAEFQALRAQVALNRGDP-------EEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred HHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 666666666665555532 4666666655556677777666654 4568899999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHHhccc
Q 008745 163 ISYPDLQMFFATAILHVHLMQW 184 (555)
Q Consensus 163 ~~~~~~~v~fals~~~~~L~~~ 184 (555)
.+..+..++..+.+..+...+.
T Consensus 530 ~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 530 HDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred cccHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988774
No 124
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=71.86 E-value=8.4 Score=28.21 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=28.2
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCC
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHV 36 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~ 36 (555)
.++..||+.++..|++..|+++|+.+++..|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678999999999999999999999998765
No 125
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=71.69 E-value=25 Score=40.68 Aligned_cols=149 Identities=14% Similarity=0.158 Sum_probs=88.8
Q ss_pred HHHhhccHHHHHHHHHHhhccCCCCC--------------hhHHHHHHHHhhH--------------HHHhhcCChHHHH
Q 008745 14 YHENKGEIGKAVKCLEAICQSHVSFL--------------PIIEVKTRLRIST--------------LLLKHTHNVNHAK 65 (555)
Q Consensus 14 ~fr~~~~i~~ai~CLeAvl~~~~~l~--------------P~~EA~~rLrla~--------------lL~e~T~N~~~Ak 65 (555)
-|-=+.+..+||||.+-+++-.+.|. .---|.+..|-|= +-+--|+-.+.|+
T Consensus 430 cfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHH
Confidence 33335578899999999998666111 1112444444331 1223345566666
Q ss_pred HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCC
Q 008745 66 SHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGD 145 (555)
Q Consensus 66 thLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D 145 (555)
.|++||... . |+---++| -+..+|++.|.+..+-+.+.+|+-+= +..+ .=+|.+|.++..-++
T Consensus 510 ~~fqkA~~I-N--P~nsvi~~----~~g~~~~~~k~~d~AL~~~~~A~~ld------~kn~----l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 510 FHFQKAVEI-N--PSNSVILC----HIGRIQHQLKRKDKALQLYEKAIHLD------PKNP----LCKYHRASILFSLGR 572 (638)
T ss_pred HHHHhhhcC-C--ccchhHHh----hhhHHHHHhhhhhHHHHHHHHHHhcC------CCCc----hhHHHHHHHHHhhcc
Confidence 666666321 1 22223333 34566666666654444444444321 1111 124678999999999
Q ss_pred hHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcc
Q 008745 146 YQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQ 183 (555)
Q Consensus 146 ~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~ 183 (555)
++.|+..|+.--+++ -....|+|++.+.+..+-.
T Consensus 573 ~~eal~~LEeLk~~v----P~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 573 YVEALQELEELKELV----PQESSVFALLGKIYKRLGN 606 (638)
T ss_pred hHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHcc
Confidence 999999999876666 3456788999999888865
No 126
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=71.02 E-value=13 Score=41.32 Aligned_cols=68 Identities=10% Similarity=-0.004 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcc----cHHHHHHhhCccc
Q 008745 450 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE----SSSQAIDLIGPVY 517 (555)
Q Consensus 450 ~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~----s~~~aL~li~P~~ 517 (555)
+..++=+|.-....|++++|...|+.|+.+..+...-..+-.|+|.+|...|+.+ .+.+++++.+|.+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 5566677888888888999999998888876665544456677788887777743 2677777666666
No 127
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.87 E-value=2.4e+02 Score=33.21 Aligned_cols=135 Identities=17% Similarity=0.196 Sum_probs=82.2
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCC--------------hhHHHHHHHHhh--------------HHHH
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFL--------------PIIEVKTRLRIS--------------TLLL 55 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~--------------P~~EA~~rLrla--------------~lL~ 55 (555)
-+++-.++|-.+.+.|+...|+.|..-+++..|-+- -..||+....=| .-+|
T Consensus 149 fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f 228 (966)
T KOG4626|consen 149 FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVF 228 (966)
T ss_pred hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHH
Confidence 356677888888888888889999888887654111 134554443322 1245
Q ss_pred hhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHH
Q 008745 56 KHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQ 135 (555)
Q Consensus 56 e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fq 135 (555)
...-|..+|-.|+|+|.. --|+|.| |+.=|..+|.-.+....+-..-.|++.++-+ +..=+++
T Consensus 229 ~~~Gei~~aiq~y~eAvk---ldP~f~d----AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn------~A~a~gN---- 291 (966)
T KOG4626|consen 229 NAQGEIWLAIQHYEEAVK---LDPNFLD----AYINLGNVYKEARIFDRAVSCYLRALNLRPN------HAVAHGN---- 291 (966)
T ss_pred hhcchHHHHHHHHHHhhc---CCCcchH----HHhhHHHHHHHHhcchHHHHHHHHHHhcCCc------chhhccc----
Confidence 566677777777777743 2355554 5566777777766554333333455544433 2222222
Q ss_pred HHHHhhhcCChHHHHHHHhh
Q 008745 136 LANAFIIEGDYQSSISALQS 155 (555)
Q Consensus 136 lA~~~~~~~D~~~A~~~L~~ 155 (555)
+|-++..+|+.+-|+..-..
T Consensus 292 la~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred eEEEEeccccHHHHHHHHHH
Confidence 55666778888888888777
No 128
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.49 E-value=18 Score=39.01 Aligned_cols=115 Identities=14% Similarity=0.034 Sum_probs=75.1
Q ss_pred hcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhc
Q 008745 421 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 500 (555)
Q Consensus 421 ~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~ 500 (555)
-++++.|..--..+.++.-.+|.++ .=.|++|+.-+++|-++--|+.|+.++++++-.+=.--|+-.+..-+
T Consensus 337 ~~~PE~AlryYRRiLqmG~~speLf--------~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i 408 (478)
T KOG1129|consen 337 DNNPEMALRYYRRILQMGAQSPELF--------CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI 408 (478)
T ss_pred CCChHHHHHHHHHHHHhcCCChHHH--------hhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEec
Confidence 3566677777777777777777765 34689999999999999999999999998876655555555554455
Q ss_pred CCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 501 GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 501 g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
||--...+-+-+ +-++|..+| .++---|.+.++.|+..+||.-
T Consensus 409 GD~nlA~rcfrl----aL~~d~~h~-----ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 409 GDFNLAKRCFRL----ALTSDAQHG-----EALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred cchHHHHHHHHH----HhccCcchH-----HHHHhHHHHHhhcCchHHHHHH
Confidence 553332222211 012222222 2344457888899999988853
No 129
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=67.41 E-value=10 Score=25.73 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=26.7
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCC
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHV 36 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~ 36 (555)
|.++..++.-+...+++.+|+.|++-+++..|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 46778889999999999999999999998765
No 130
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=67.41 E-value=21 Score=39.52 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 008745 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (555)
Q Consensus 449 ~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~ 481 (555)
.+.+|--+|.+..++|.+++|..||..|+++-.
T Consensus 470 D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 470 DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 478999999999999999999999999997643
No 131
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=67.13 E-value=11 Score=25.35 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=28.1
Q ss_pred HHHhHHHHHHhhhcCChHHHHHHHhhHHHHHh
Q 008745 130 CNFNSQLANAFIIEGDYQSSISALQSGYVCAT 161 (555)
Q Consensus 130 ~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~ 161 (555)
|+..+.++.++...||+..|.+.++++.++..
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45678899999999999999999999988875
No 132
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=66.35 E-value=35 Score=37.26 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 008745 364 MQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT 443 (555)
Q Consensus 364 ~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ 443 (555)
.+++++.=+.|...+.+. .+. +.+++.++.-| ++|+. .=|++.+..++ +.+..+...++.++. -.-|+
T Consensus 143 ~d~l~~~sr~l~R~Fn~i--l~d-R~p~ln~skk~--g~y~i---aNlL~~iY~Rl--~~~~l~~n~lka~~~--vs~~D 210 (413)
T COG5600 143 QDNLSKISRLLTRMFNSI--LND-RSPALNPSKKV--GLYYI---ANLLFQIYLRL--GRFKLCENFLKASKE--VSMPD 210 (413)
T ss_pred HhhHHHHHHHHHHHHHHh--cCC-cCccCChhhHH--HHHHH---HHHHHHHHHHh--ccHHHHHHHHHhccc--ccccc
Confidence 566666667766655543 222 23435567778 88863 22333455554 556666656555554 33355
Q ss_pred hhhhh---hhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 444 ILQAC---ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 444 ll~~~---~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
+.... --.-||.+|.|..-..++.+|-.||.+|.-....
T Consensus 211 i~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 211 ISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred cchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 54333 3456999999999999999999999999766544
No 133
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.27 E-value=50 Score=36.26 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=75.2
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 008745 353 LGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALV 432 (555)
Q Consensus 353 ~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~ 432 (555)
.....|.|..|.+.|++++..++-. -+..++ |. ....-+++...-|+.+|.+=..+|..|++.-.
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~---~~~~~e--e~----------~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~ 281 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYR---RSFDEE--EQ----------KKAEALKLACHLNLAACYLKLKEYKEAIESCN 281 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhcc---ccCCHH--HH----------HHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Confidence 4456788888999998888874321 111221 11 12222467777789999999999999988755
Q ss_pred HHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh
Q 008745 433 QMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (555)
Q Consensus 433 q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~ 483 (555)
.+.++-..++. ..|=.|.....+|+|+.|..-|+.|+++-.+.
T Consensus 282 kvLe~~~~N~K--------ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 282 KVLELDPNNVK--------ALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHhcCCCchh--------HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 55444444433 34668899999999999999999999877554
No 134
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=65.83 E-value=2.2e+02 Score=31.48 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHH
Q 008745 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 489 (555)
Q Consensus 423 ~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~ 489 (555)
.+....+-++.+..|..+.|.- |.+++.+|.-+.--+.+..|..+|..|++.-+|-+.+++.
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~-----p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~l 367 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPED-----PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAEL 367 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCC-----hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHH
Confidence 3445566778888999999875 4899999999999999999999999999988887766544
No 135
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=63.88 E-value=2.3e+02 Score=31.14 Aligned_cols=162 Identities=16% Similarity=0.224 Sum_probs=101.0
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
|.++..=|--+--.|+-+.||.=|+-|++.+| .+- -+|+|=|.+|+.-.+ .++|+.-+.+. ++.-| ...+
T Consensus 72 Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp----DF~-~ARiQRg~vllK~Ge-le~A~~DF~~v---l~~~~-s~~~ 141 (504)
T KOG0624|consen 72 YQAIFRRATVYLAMGKSKAALQDLSRVLELKP----DFM-AARIQRGVVLLKQGE-LEQAEADFDQV---LQHEP-SNGL 141 (504)
T ss_pred HHHHHHHHHHHhhhcCCccchhhHHHHHhcCc----cHH-HHHHHhchhhhhccc-HHHHHHHHHHH---HhcCC-Ccch
Confidence 44444445555555677778888888887655 333 379999999998654 45555554332 23222 2345
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHH-----HHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHH
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLIL-----YKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L-----~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~ 159 (555)
--++++-|+-+-.+.+.....|++. ..+|+....- +-..+|--.|+-.+|..+..+|+...||+-|..
T Consensus 142 ~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l---lEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~---- 214 (504)
T KOG0624|consen 142 VLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL---LEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQ---- 214 (504)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH---HhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHH----
Confidence 5566666665544433221111110 0111111100 113489999999999999999999999998865
Q ss_pred HhhhCChhHHHHHHHHHHHHHhcc
Q 008745 160 ATEISYPDLQMFFATAILHVHLMQ 183 (555)
Q Consensus 160 A~~~~~~~~~v~fals~~~~~L~~ 183 (555)
|++.....++.+|-+|++++.+-+
T Consensus 215 askLs~DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 215 ASKLSQDNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHhccccchHHHHHHHHHHHhhhh
Confidence 455566678999999999998865
No 136
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=63.85 E-value=27 Score=36.21 Aligned_cols=88 Identities=17% Similarity=0.278 Sum_probs=67.2
Q ss_pred hhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhH
Q 008745 50 ISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWS 129 (555)
Q Consensus 50 la~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~ 129 (555)
+|+.++. -.|+.+|.+|+.|+..+.-. | -+++++|+=+|-+.|....++...+|++++..++++-+.
T Consensus 106 ~gk~~~~-~g~~~~A~~~~rkA~~l~p~-----d--~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n----- 172 (257)
T COG5010 106 QGKNQIR-NGNFGEAVSVLRKAARLAPT-----D--WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN----- 172 (257)
T ss_pred HHHHHHH-hcchHHHHHHHHHHhccCCC-----C--hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh-----
Confidence 4444443 34788999999998654222 2 356889999999999999999999999999988655443
Q ss_pred HHHhHHHHHHhhhcCChHHHHHHHhh
Q 008745 130 CNFNSQLANAFIIEGDYQSSISALQS 155 (555)
Q Consensus 130 ~~f~fqlA~~~~~~~D~~~A~~~L~~ 155 (555)
-++-.+...||+..|...|..
T Consensus 173 -----Nlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 173 -----NLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred -----hHHHHHHHcCCHHHHHHHHHH
Confidence 255567789999999999887
No 137
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=63.56 E-value=90 Score=36.72 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHH
Q 008745 395 SAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYV 474 (555)
Q Consensus 395 ~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~ 474 (555)
.++||.++-+ +=..++.++|++-+.++...|..||. +.+..|++.+.+|+.+.|-..|.
T Consensus 651 eRv~mKs~~~-------------er~ld~~eeA~rllEe~lk~fp~f~K--------l~lmlGQi~e~~~~ie~aR~aY~ 709 (913)
T KOG0495|consen 651 ERVWMKSANL-------------ERYLDNVEEALRLLEEALKSFPDFHK--------LWLMLGQIEEQMENIEMAREAYL 709 (913)
T ss_pred chhhHHHhHH-------------HHHhhhHHHHHHHHHHHHHhCCchHH--------HHHHHhHHHHHHHHHHHHHHHHH
Confidence 6788765531 22345778888877665554444444 46899999999999999999999
Q ss_pred HHHhhc-CChhHHH
Q 008745 475 EAAKIT-ESKSMQA 487 (555)
Q Consensus 475 ~A~k~t-~s~~~~~ 487 (555)
+-+|.+ .+.++|.
T Consensus 710 ~G~k~cP~~ipLWl 723 (913)
T KOG0495|consen 710 QGTKKCPNSIPLWL 723 (913)
T ss_pred hccccCCCCchHHH
Confidence 988887 4556774
No 138
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=63.54 E-value=74 Score=30.40 Aligned_cols=98 Identities=18% Similarity=0.115 Sum_probs=68.8
Q ss_pred cchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcc----cHHHHHHhhCccc
Q 008745 442 PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE----SSSQAIDLIGPVY 517 (555)
Q Consensus 442 P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~----s~~~aL~li~P~~ 517 (555)
|.....-.+.-.-+.|+-+---|+++.|...|..|+.++..+.. +-=|-|-.|=..|+++ .+++++++-+|--
T Consensus 35 ~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS---ayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t 111 (175)
T KOG4555|consen 35 PDTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERAS---AYNNRAQALRLQGDDEEALDDLNKALELAGDQT 111 (175)
T ss_pred CchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchH---hhccHHHHHHHcCChHHHHHHHHHHHHhcCccc
Confidence 33333345566668888888899999999999999998854421 1223444444446754 3899999999962
Q ss_pred cccccccchhHHHHHHHHHHHHHHhhcChhhhhh
Q 008745 518 QMKDTINGVREEASLHFAYGLLLMRQQDFQEARL 551 (555)
Q Consensus 518 ~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~ 551 (555)
++ +.-++.-.|++...+||.+.||.
T Consensus 112 rt---------acqa~vQRg~lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 112 RT---------ACQAFVQRGLLYRLLGNDDAARA 136 (175)
T ss_pred hH---------HHHHHHHHHHHHHHhCchHHHHH
Confidence 22 33456668999999999999985
No 139
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=63.03 E-value=54 Score=31.06 Aligned_cols=91 Identities=20% Similarity=0.143 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcccHHHHHHhhCccccccccccchhH
Q 008745 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 528 (555)
Q Consensus 449 ~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ 528 (555)
.+.-.|-.|.=+.--|++++|..+|..--.--.-.+...-+.|.++=+|.-.++-+ .+++.+.-+.+.+..+..+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~---~A~a~~~rFirLhP~hp~v-- 83 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYE---EAIAAYDRFIRLHPTHPNV-- 83 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHH---HHHHHHHHHHHhCCCCCCc--
Confidence 45567888999999999999999999665444555677789999999998866633 2222222233333223333
Q ss_pred HHHHHHHHHHHHHhhcC
Q 008745 529 EASLHFAYGLLLMRQQD 545 (555)
Q Consensus 529 ka~~~fv~gl~~~~q~~ 545 (555)
--++|..||..|.|.+
T Consensus 84 -dYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 84 -DYAYYMRGLSYYEQDE 99 (142)
T ss_pred -cHHHHHHHHHHHHHhh
Confidence 3569999999999865
No 140
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=62.43 E-value=14 Score=24.61 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=17.8
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccC
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSH 35 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~ 35 (555)
..+..+|.-+...+++..|+.|++.+++-.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 455566666666666666666666666543
No 141
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.88 E-value=1.4e+02 Score=33.70 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=93.6
Q ss_pred hCCCCChHHHHHHHHHHHH---HHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHH------HHHHHHhhcCH
Q 008745 354 GRPKGLFKECMQRIQSGMQ---TIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLEN------KVAVELTRSGF 424 (555)
Q Consensus 354 ~~~kg~~~kA~Kyl~~gl~---~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~------~v~~~lt~~~~ 424 (555)
....|.++||-.++.++++ .|.+.|...|.+.. .-.+| ..-+ .+|+.|+-+|+-| ++-+.=..-++
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~l--deal--d~f~klh~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNL--DEAL--DCFLKLHAILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCH--HHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence 3467889999999999997 46666777776643 12222 1112 5677777766633 23333346688
Q ss_pred HHHHHHHHHHHHHHHhccc------------------------hhhhhhhHHHHH--HHHHHHHhCCHHHHHHHHHHHHh
Q 008745 425 VEAQEALVQMKNWFIRFPT------------------------ILQACESMIEML--RGQYAHSVGCYSEAAFHYVEAAK 478 (555)
Q Consensus 425 ~~A~~~l~q~~~~~~~~P~------------------------ll~~~~~~i~~l--~G~ya~s~g~~~~A~~~F~~A~k 478 (555)
.+|++-+.|..++.-.-|. ..+.+.|.|++. +|-|..-|.--+.|..-|..|.-
T Consensus 575 aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 8898888877665333333 334455666665 57788888888899999987765
Q ss_pred hcCChhHHHHHHHHHHHHHhhcCCcccHHHHHHhhCccc
Q 008745 479 ITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVY 517 (555)
Q Consensus 479 ~t~s~~~~~~~~lnlAi~yL~~g~~~s~~~aL~li~P~~ 517 (555)
.-.+.+-|.+-+.. |-...+...+++|+-.-..
T Consensus 655 iqp~~~kwqlmias------c~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 655 IQPNQSKWQLMIAS------CFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred cCccHHHHHHHHHH------HHHhcccHHHHHHHHHHHH
Confidence 55566555433221 1112233666776665543
No 142
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.82 E-value=36 Score=38.85 Aligned_cols=85 Identities=19% Similarity=0.297 Sum_probs=58.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHH
Q 008745 357 KGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR-SGFVEAQEALVQMK 435 (555)
Q Consensus 357 kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~-~~~~~A~~~l~q~~ 435 (555)
.|.|+||.++++.||+. -|+ .-.+|- +--..|+- .+-++|+..-.++.
T Consensus 443 s~efdraiDcf~~AL~v----------~Pn-------d~~lWN--------------RLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQV----------KPN-------DYLLWN--------------RLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred chHHHHHHHHHHHHHhc----------CCc-------hHHHHH--------------HhhHHhcCCcccHHHHHHHHHHH
Confidence 58889999999888764 232 146771 12223333 34568887766665
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 008745 436 NWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 480 (555)
Q Consensus 436 ~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t 480 (555)
++-=.|-| .-|=+|+-|+-.|+|++|..||.+|+.+-
T Consensus 492 qLqP~yVR--------~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 492 QLQPGYVR--------VRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred hcCCCeee--------eehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 55433333 24778999999999999999999998754
No 143
>PRK11906 transcriptional regulator; Provisional
Probab=60.76 E-value=1.9e+02 Score=32.60 Aligned_cols=87 Identities=10% Similarity=0.084 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCccc----HHHHHHhhCccccccccc
Q 008745 448 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 523 (555)
Q Consensus 448 ~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s----~~~aL~li~P~~~~~~~~ 523 (555)
..++.+...|....-+|+++.|..-|..|.-+.++... +--..+.+....|+.+. +.+++. +.|.
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~---~~~~~~~~~~~~G~~~~a~~~i~~alr-LsP~------- 404 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIAS---LYYYRALVHFHNEKIEEARICIDKSLQ-LEPR------- 404 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHH---HHHHHHHHHHHcCCHHHHHHHHHHHhc-cCch-------
Confidence 45889999999999999999999999999987766532 22223444444477543 444443 3454
Q ss_pred cchhHHHHHHHHHHHH-HHhhcChhhhh
Q 008745 524 NGVREEASLHFAYGLL-LMRQQDFQEAR 550 (555)
Q Consensus 524 ~~~~~ka~~~fv~gl~-~~~q~~~~eAr 550 (555)
|.++-..+=.. .+..+.+++|-
T Consensus 405 -----~~~~~~~~~~~~~~~~~~~~~~~ 427 (458)
T PRK11906 405 -----RRKAVVIKECVDMYVPNPLKNNI 427 (458)
T ss_pred -----hhHHHHHHHHHHHHcCCchhhhH
Confidence 44444455555 55555566553
No 144
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=60.52 E-value=1.1e+02 Score=27.61 Aligned_cols=107 Identities=14% Similarity=0.049 Sum_probs=61.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 008745 355 RPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQM 434 (555)
Q Consensus 355 ~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~ 434 (555)
...|..+.+...+++++...+|.+ .++... ..+....+.-+-...+..++..+-..+..+++..|.+. +
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~-----l~~~~~---~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~---~ 85 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDF-----LPDLDD---EEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL---L 85 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SST-----TGGGTT---STTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH---H
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCC-----CCCCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH---H
Confidence 345667777777777777655432 122111 12444444444445566677777788899999988877 4
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008745 435 KNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAA 477 (555)
Q Consensus 435 ~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~ 477 (555)
..++...|.--..+ ..+-......|+..+|..+|....
T Consensus 86 ~~~l~~dP~~E~~~-----~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 86 QRALALDPYDEEAY-----RLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHSTT-HHHH-----HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHH-----HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45566667543333 333344567888899999888653
No 145
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=60.43 E-value=94 Score=31.41 Aligned_cols=114 Identities=19% Similarity=0.151 Sum_probs=65.9
Q ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcccHHHHH
Q 008745 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAI 510 (555)
Q Consensus 431 l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s~~~aL 510 (555)
+.+..+-++.-|+. +=+|-+|.-+--.|++.+|..||++|+.=-=..+-..+..+.-|.. -.+++-..-+.|
T Consensus 76 ~Rea~~~~~~ApTv------qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf--a~~~~A~a~~tL 147 (251)
T COG4700 76 LREATEELAIAPTV------QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF--AIQEFAAAQQTL 147 (251)
T ss_pred HHHHHHHHhhchhH------HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH--hhccHHHHHHHH
Confidence 44455556666664 4567788888889999999999999875322223333444433333 334544333333
Q ss_pred Hh---hCccccccccccch----------------hHHHHHH-------HHHHHHHHhhcChhhhhhh
Q 008745 511 DL---IGPVYQMKDTINGV----------------REEASLH-------FAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 511 ~l---i~P~~~~~~~~~~~----------------~~ka~~~-------fv~gl~~~~q~~~~eAr~~ 552 (555)
|- -+|..+++|.+.-. -|.+..+ --||--+.+|||..|||.+
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 32 24777777653110 0222222 2466778899999998864
No 146
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.42 E-value=52 Score=35.71 Aligned_cols=148 Identities=14% Similarity=-0.008 Sum_probs=90.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcccC------cccccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008745 358 GLFKECMQRIQSGMQTIQDALLKLGIT------DGVREVDLQ-HSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (555)
Q Consensus 358 g~~~kA~Kyl~~gl~~i~~~l~kl~~~------~~v~e~~l~-~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~ 430 (555)
|.+++|-+++...+++=.-.++...-+ ++-.|..+. -++|.--+++ .=.+.-|+.+|-+....++.+.-.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~---speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ---SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC---ChHHHhhHHHHHHhhcchhhhHHH
Confidence 777888889988877633333433211 222333321 1122211111 113445778888888888888877
Q ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcc---cHH
Q 008745 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE---SSS 507 (555)
Q Consensus 431 l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~---s~~ 507 (555)
+........ -.+-.+-+.|=+|+++...||+.-|..-|+-|+ +.++.. .=+-.|+|++--++||-+ |+-
T Consensus 381 f~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL--~~d~~h-~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 381 FQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL--TSDAQH-GEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred HHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHh--ccCcch-HHHHHhHHHHHhhcCchHHHHHHH
Confidence 444333321 134578899999999999999999999999887 333322 233456889988999854 444
Q ss_pred HHHHhhCcc
Q 008745 508 QAIDLIGPV 516 (555)
Q Consensus 508 ~aL~li~P~ 516 (555)
++-..+.|.
T Consensus 453 ~~A~s~~P~ 461 (478)
T KOG1129|consen 453 NAAKSVMPD 461 (478)
T ss_pred HHhhhhCcc
Confidence 444556664
No 147
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=58.27 E-value=21 Score=26.08 Aligned_cols=32 Identities=13% Similarity=-0.007 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh
Q 008745 452 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (555)
Q Consensus 452 i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~ 483 (555)
..+.+|......|++++|+..|+.+++...+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 56788999999999999999999999876544
No 148
>PRK11906 transcriptional regulator; Provisional
Probab=57.95 E-value=1.8e+02 Score=32.75 Aligned_cols=66 Identities=8% Similarity=-0.074 Sum_probs=48.6
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 008745 419 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 492 (555)
Q Consensus 419 lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~ln 492 (555)
.-.++++.|.-.+.+...+. |. .+.++|..|.+..-.|+.++|..++..|++++..+---.+.++.
T Consensus 349 ~~~~~~~~a~~~f~rA~~L~---Pn-----~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~ 414 (458)
T PRK11906 349 GLSGQAKVSHILFEQAKIHS---TD-----IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKEC 414 (458)
T ss_pred HhhcchhhHHHHHHHHhhcC---Cc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 34456777776665555443 33 46788999999999999999999999999998777544444443
No 149
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=57.71 E-value=61 Score=36.82 Aligned_cols=93 Identities=19% Similarity=0.201 Sum_probs=65.7
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008745 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (555)
Q Consensus 351 vi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~ 430 (555)
+.....+|++.+|.++|.++++. .|+ .++.|| |.++|-+--+++..|++.
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr----------~P~------------Da~lYs--------NRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKR----------DPE------------DARLYS--------NRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhc----------CCc------------hhHHHH--------HHHHHHHHHhhHHHHHHH
Confidence 55566778888999988887665 233 346676 346666677778888777
Q ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 008745 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (555)
Q Consensus 431 l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~ 481 (555)
..-+.+. .|+-+.++--- |....++.+++.|...|+.++....
T Consensus 415 a~~~ieL---~p~~~kgy~RK-----g~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 415 AKKCIEL---DPNFIKAYLRK-----GAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHhc---CchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4444444 56655544333 8888899999999999999987653
No 150
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.96 E-value=2e+02 Score=29.98 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHhhc---cCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCC-----cchhhhhhHHHH
Q 008745 20 EIGKAVKCLEAICQ---SHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIP-----SCFELKCRTFSL 91 (555)
Q Consensus 20 ~i~~ai~CLeAvl~---~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~-----~~~dlK~~a~sL 91 (555)
++-.|+.||+..++ -.- .=++-|+-+.-||.|+-.+-.++..|-.|+|+|..-.++=- +-=-||+..+..
T Consensus 88 ~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 77788999997774 212 22567888889999988888899999999999987666521 101355554444
Q ss_pred HHHHHHHcCCCchHhHHHHHHHHH---hhhhhcccccchhHHHH-hHHHHHHhhhcCChHHHHHHHhhHHHH
Q 008745 92 LSQCYHLVGAIPPQKLILYKALDL---TSSASQDVAVKLWSCNF-NSQLANAFIIEGDYQSSISALQSGYVC 159 (555)
Q Consensus 92 La~~y~~~~~~~~~k~~L~k~i~~---s~~~~e~~~~~~W~~~f-~fqlA~~~~~~~D~~~A~~~L~~g~~~ 159 (555)
+-+=|.+ +|+. ..+.+=+-+..-|.-.= .|+-+.-|....|..++-..|+++.++
T Consensus 166 ~leqY~~-------------Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 166 QLEQYSK-------------AIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHH-------------HHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 4333332 2222 11111112233455443 345556677779999999999997654
No 151
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=56.87 E-value=1.3e+02 Score=35.85 Aligned_cols=129 Identities=19% Similarity=0.220 Sum_probs=93.9
Q ss_pred HhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHH
Q 008745 10 GLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTF 89 (555)
Q Consensus 10 ~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~ 89 (555)
..|+.|-..++-..+--||.-+=+..+ +.+ -+.++...+++.-.+..+|+..+--|.. +.|. -+..-
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~-----~~~~~~G~~~~~~~~~~EA~~af~~Al~-ldP~------hv~s~ 721 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDP-LSA-----SVYYLRGLLLEVKGQLEEAKEAFLVALA-LDPD------HVPSM 721 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcch-hhH-----HHHHHhhHHHHHHHhhHHHHHHHHHHHh-cCCC------CcHHH
Confidence 556777788888888889887776654 233 3577888899999999999999966643 2332 24557
Q ss_pred HHHHHHHHHcCCC-chHh-HHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHh
Q 008745 90 SLLSQCYHLVGAI-PPQK-LILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCAT 161 (555)
Q Consensus 90 sLLa~~y~~~~~~-~~~k-~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~ 161 (555)
+.||+||.+.|.. .+++ -.|+.+++.= + ..+..|. .++.++...||++.|.+-.+..+....
T Consensus 722 ~Ala~~lle~G~~~la~~~~~L~dalr~d---p--~n~eaW~-----~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 722 TALAELLLELGSPRLAEKRSLLSDALRLD---P--LNHEAWY-----YLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhC---C--CCHHHHH-----HHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 7899999999966 3333 2667776642 1 2366884 499999999999999998888666553
No 152
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.39 E-value=2.3e+02 Score=29.05 Aligned_cols=76 Identities=21% Similarity=0.337 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHH-----H-Hh--------hcCChhHHHHHHHH
Q 008745 427 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVE-----A-AK--------ITESKSMQAMCHAY 492 (555)
Q Consensus 427 A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~-----A-~k--------~t~s~~~~~~~~ln 492 (555)
=.+-++.+..|. ..+.- ..=.|.+|-+.|.+..--|++.+|+.||.. + .. ....++-.++-..-
T Consensus 69 r~~fi~~ai~WS-~~~~~-~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R 146 (260)
T PF04190_consen 69 RKKFIKAAIKWS-KFGSY-KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIAR 146 (260)
T ss_dssp HHHHHHHHHHHH-HTSS--TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHH
T ss_pred HHHHHHHHHHHH-ccCCC-CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 344567777777 43322 224589999999999999999999999983 1 11 11333445777778
Q ss_pred HHHHHhhcCCcc
Q 008745 493 AAVSYFCIGDAE 504 (555)
Q Consensus 493 lAi~yL~~g~~~ 504 (555)
+.+-|||.++..
T Consensus 147 aVL~yL~l~n~~ 158 (260)
T PF04190_consen 147 AVLQYLCLGNLR 158 (260)
T ss_dssp HHHHHHHTTBHH
T ss_pred HHHHHHHhcCHH
Confidence 888899988744
No 153
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=55.48 E-value=1.8e+02 Score=31.85 Aligned_cols=146 Identities=19% Similarity=0.199 Sum_probs=102.5
Q ss_pred HhHHHHHhhc-----cHHHHHHHHHHhhccCCCCC-hhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch-
Q 008745 10 GLADYHENKG-----EIGKAVKCLEAICQSHVSFL-PIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF- 82 (555)
Q Consensus 10 ~lAe~fr~~~-----~i~~ai~CLeAvl~~~~~l~-P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~- 82 (555)
.|-|.|.+.+ .|.-|-.|.|=+-..++.|+ ...|| |+.++++ .|.-..+|- -.+..|++....++
T Consensus 92 ~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Lea----rli~Ly~-d~~~YteAl---aL~~~L~rElKKlDD 163 (411)
T KOG1463|consen 92 SLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEA----RLIRLYN-DTKRYTEAL---ALINDLLRELKKLDD 163 (411)
T ss_pred HHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHH-hhHHHHHHH---HHHHHHHHHHHhccc
Confidence 3445555444 88889999997776555444 44555 4555554 344455543 34556677777777
Q ss_pred -hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHh
Q 008745 83 -ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCAT 161 (555)
Q Consensus 83 -dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~ 161 (555)
.+-.+.+-+=+..||..+..+.+|.+|.-|-..+.. .|-.|--.-.+=+|-.=+|+.++||..|.+..=...+-..
T Consensus 164 K~lLvev~llESK~y~~l~Nl~KakasLTsART~Ana---iYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 164 KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANA---IYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcc---cccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Confidence 677788888899999999999888887776665543 4666666667777777788999999999999877666666
Q ss_pred hhCCh
Q 008745 162 EISYP 166 (555)
Q Consensus 162 ~~~~~ 166 (555)
..+++
T Consensus 241 s~~~~ 245 (411)
T KOG1463|consen 241 SLDDD 245 (411)
T ss_pred ccCCc
Confidence 66664
No 154
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=55.47 E-value=85 Score=31.49 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=23.0
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHHHHHhcc
Q 008745 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLG 382 (555)
Q Consensus 351 vi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~ 382 (555)
+|.+.++|+|++|++.++++-+. +++++
T Consensus 36 aI~~~H~~~~eeA~~~l~~a~~~----v~~Lk 63 (204)
T COG2178 36 AIFLLHRGDFEEAEKKLKKASEA----VEKLK 63 (204)
T ss_pred HHHHHHhccHHHHHHHHHHHHHH----HHHHH
Confidence 67888999999999999888777 45554
No 155
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=55.25 E-value=10 Score=26.66 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcCCh
Q 008745 454 MLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (555)
Q Consensus 454 ~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~ 483 (555)
.-+|......|+++.|...|+.++.+.+++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 457899999999999999999987665443
No 156
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.05 E-value=93 Score=36.45 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=65.6
Q ss_pred hHHHHHhhccHHHHHHHHHHhhccCCCCChhH-----------------------------HHHHHHHhhHHHHhhcCCh
Q 008745 11 LADYHENKGEIGKAVKCLEAICQSHVSFLPII-----------------------------EVKTRLRISTLLLKHTHNV 61 (555)
Q Consensus 11 lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~-----------------------------EA~~rLrla~lL~e~T~N~ 61 (555)
|+--|-.+|+|-.||+=+|-+++..|.|+|-. -|-++=-+|.|.+|. --.
T Consensus 224 Lg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq-G~l 302 (966)
T KOG4626|consen 224 LGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ-GLL 302 (966)
T ss_pred cchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecc-ccH
Confidence 44445566666666666666666655555421 122222233333332 235
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHH-HhHHHHHHh
Q 008745 62 NHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCN-FNSQLANAF 140 (555)
Q Consensus 62 ~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~-f~fqlA~~~ 140 (555)
|.|-++++||.. --|+|.|-++.+.-.|-+. |....+-.--+|++.+. |++. =+.-|++|.
T Consensus 303 dlAI~~Ykral~---~~P~F~~Ay~NlanALkd~----G~V~ea~~cYnkaL~l~-----------p~hadam~NLgni~ 364 (966)
T KOG4626|consen 303 DLAIDTYKRALE---LQPNFPDAYNNLANALKDK----GSVTEAVDCYNKALRLC-----------PNHADAMNNLGNIY 364 (966)
T ss_pred HHHHHHHHHHHh---cCCCchHHHhHHHHHHHhc----cchHHHHHHHHHHHHhC-----------CccHHHHHHHHHHH
Confidence 566666666632 2366776666665555544 55443333334555443 2221 122466666
Q ss_pred hhcCChHHHHHHHhhHHH
Q 008745 141 IIEGDYQSSISALQSGYV 158 (555)
Q Consensus 141 ~~~~D~~~A~~~L~~g~~ 158 (555)
...|-++.|+..-.+...
T Consensus 365 ~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE 382 (966)
T ss_pred HHhccchHHHHHHHHHHh
Confidence 666666666666555443
No 157
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=51.94 E-value=28 Score=24.39 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=25.7
Q ss_pred HHHHHHhhhcCChHHHHHHHhhHHHHHhhhCC
Q 008745 134 SQLANAFIIEGDYQSSISALQSGYVCATEISY 165 (555)
Q Consensus 134 fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~ 165 (555)
..+|.++...|||+.|++..+..+.++...++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 46899999999999999999997777766554
No 158
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=51.41 E-value=42 Score=28.87 Aligned_cols=76 Identities=20% Similarity=0.214 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhh
Q 008745 62 NHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFI 141 (555)
Q Consensus 62 ~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~ 141 (555)
+.||.|.|++. ++|++ |....+-+.-+|+++...+ ..=.|+.+=-++++|.
T Consensus 4 ~~ak~~ie~Gl---------------------kLY~~-~~~~~Al~~W~~aL~k~~~-------~~~rf~~lG~l~qA~~ 54 (80)
T PF10579_consen 4 DQAKQQIEKGL---------------------KLYHQ-NETQQALQKWRKALEKITD-------REDRFRVLGYLIQAHM 54 (80)
T ss_pred HHHHHHHHHHH---------------------HHhcc-chHHHHHHHHHHHHhhcCC-------hHHHHHHHHHHHHHHH
Confidence 56888888874 34533 3333333334566665443 1212222335788899
Q ss_pred hcCChHHHHHHHhhHHHHHhhhCCh
Q 008745 142 IEGDYQSSISALQSGYVCATEISYP 166 (555)
Q Consensus 142 ~~~D~~~A~~~L~~g~~~A~~~~~~ 166 (555)
.-|.|...+...-.=..+|++.+||
T Consensus 55 e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 55 EWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999988887778888888876
No 159
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.03 E-value=28 Score=40.14 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=60.4
Q ss_pred HHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHH
Q 008745 14 YHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLS 93 (555)
Q Consensus 14 ~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa 93 (555)
+.|-.|+.-.|++||.-++..+| ...---=.+||.+|+.|| =.++|---|.++..+.-+=|-+ +..+.
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p----~~~~v~~v~la~~~~~~~-~~~da~~~l~q~l~~~~sepl~-------~~~~g 683 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAP----LQQDVPLVNLANLLIHYG-LHLDATKLLLQALAINSSEPLT-------FLSLG 683 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccCh----hhhcccHHHHHHHHHHhh-hhccHHHHHHHHHhhcccCchH-------HHhcc
Confidence 56778899999999999997765 222222358999999999 6667777777776554333322 34456
Q ss_pred HHHHHcCCCchHhHHHHHHHHHhh
Q 008745 94 QCYHLVGAIPPQKLILYKALDLTS 117 (555)
Q Consensus 94 ~~y~~~~~~~~~k~~L~k~i~~s~ 117 (555)
++|.....+..+-+.++.|++..-
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCC
Confidence 666655555555556666666543
No 160
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=50.76 E-value=5.7e+02 Score=31.54 Aligned_cols=124 Identities=10% Similarity=0.053 Sum_probs=72.5
Q ss_pred hHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhh
Q 008745 41 IIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSAS 120 (555)
Q Consensus 41 ~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~ 120 (555)
-+.|.+=|=+-.+.|...++...|..+|.+|+.. -|...++ -+.||.-|+-.|....+-++--.+|.-+.+.+
T Consensus 232 ~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~---n~~nP~~----l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~ 304 (1018)
T KOG2002|consen 232 CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE---NNENPVA----LNHLANHFYFKKDYERVWHLAEHAIKNTENKS 304 (1018)
T ss_pred hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh---cCCCcHH----HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence 4455555555556666666888888888777532 2333343 45677777776766544443344444432211
Q ss_pred cccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHh
Q 008745 121 QDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHL 181 (555)
Q Consensus 121 e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L 181 (555)
.--.. .|+++-.+...|||..|...-......+..+ ++--+|-+.+.+++.
T Consensus 305 ~~aes-------~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~---~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 305 IKAES-------FYQLGRSYHAQGDFEKAFKYYMESLKADNDN---FVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHH-------HHHHHHHHHhhccHHHHHHHHHHHHccCCCC---ccccccchhHHHHHh
Confidence 11111 2458888999999999999888766655444 344444444444444
No 161
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=50.63 E-value=69 Score=32.07 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=57.7
Q ss_pred hCCHHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHhhcCCcc--c----HHHHHHhhCccccccccc-cchhHHHHHH
Q 008745 463 VGCYSEAAFHYVEAAKITE--SKSMQAMCHAYAAVSYFCIGDAE--S----SSQAIDLIGPVYQMKDTI-NGVREEASLH 533 (555)
Q Consensus 463 ~g~~~~A~~~F~~A~k~t~--s~~~~~~~~lnlAi~yL~~g~~~--s----~~~aL~li~P~~~~~~~~-~~~~~ka~~~ 533 (555)
.+.+++|...|.-|+-.+. ......++.+++=++||..+..+ . +.+|++.-.-.+...+.- -++ +...++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~-~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM-DEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc-hHHHHH
Confidence 4567788888887754442 22233666777667777643222 1 677887776665554432 233 345689
Q ss_pred HHHHHHHHhhcChhhhhh
Q 008745 534 FAYGLLLMRQQDFQEARL 551 (555)
Q Consensus 534 fv~gl~~~~q~~~~eAr~ 551 (555)
|.-|.+.++=|++.||++
T Consensus 169 YLigeL~rrlg~~~eA~~ 186 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKR 186 (214)
T ss_pred HHHHHHHHHhCCHHHHHH
Confidence 999999999999999985
No 162
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=49.36 E-value=4.5e+02 Score=29.99 Aligned_cols=146 Identities=18% Similarity=0.270 Sum_probs=96.6
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
-.+..||.|+-..|++..|+...+.++.-.|+++...-.++|+ +.|--|+.+|-..++.|..| ..-.+|--=|
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari------lKh~G~~~~Aa~~~~~Ar~L-D~~DRyiNsK 267 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI------LKHAGDLKEAAEAMDEAREL-DLADRYINSK 267 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhC-ChhhHHHHHH
Confidence 4566889999999999999999998888777666666666653 78999999999999999654 2212322222
Q ss_pred hhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchh--HH-HHhHHHHHHhhhcCChHHHHHHHhhHHHHHhh
Q 008745 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLW--SC-NFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W--~~-~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~ 162 (555)
.+.-+.+.|....+..+ .--.++.+. +.....+ +| -|...-|.++...||+..|+.....+......
T Consensus 268 ------~aKy~LRa~~~e~A~~~---~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 268 ------CAKYLLRAGRIEEAEKT---ASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred ------HHHHHHHCCCHHHHHHH---HHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 24444445544332221 111122222 1111111 23 26678889999999999999999999988877
Q ss_pred hCChhH
Q 008745 163 ISYPDL 168 (555)
Q Consensus 163 ~~~~~~ 168 (555)
..+.+.
T Consensus 338 ~~~DQf 343 (517)
T PF12569_consen 338 FEEDQF 343 (517)
T ss_pred Hhcccc
Confidence 666443
No 163
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=49.03 E-value=1.7e+02 Score=33.08 Aligned_cols=122 Identities=13% Similarity=0.027 Sum_probs=81.8
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 008745 418 ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 497 (555)
Q Consensus 418 ~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~y 497 (555)
..-.++++.|.+.+.+ +....|.- +...-+.|.+...-|+.++|...|+.|+.+..+. -...+|.+..|
T Consensus 316 ~~~~~~~d~A~~~l~~---L~~~~P~N-----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~---~~l~~~~a~al 384 (484)
T COG4783 316 TYLAGQYDEALKLLQP---LIAAQPDN-----PYYLELAGDILLEANKAKEAIERLKKALALDPNS---PLLQLNLAQAL 384 (484)
T ss_pred HHHhcccchHHHHHHH---HHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---cHHHHHHHHHH
Confidence 4445788888888777 45566643 4445577888899999999999999999877665 56678888899
Q ss_pred hhcCCcccHHHHH-HhhC--cccccc-------ccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 498 FCIGDAESSSQAI-DLIG--PVYQMK-------DTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 498 L~~g~~~s~~~aL-~li~--P~~~~~-------~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
+..|+|...-+.| +.+. |.+-.. .+-.|- .+-++-.++-..+..|++++|+..
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~--~~~a~~A~AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN--RAEALLARAEGYALAGRLEQAIIF 447 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc--hHHHHHHHHHHHHhCCCHHHHHHH
Confidence 8888876322222 2221 210000 001333 456677888888999999998753
No 164
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=48.93 E-value=28 Score=22.84 Aligned_cols=24 Identities=13% Similarity=-0.090 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Q 008745 451 MIEMLRGQYAHSVGCYSEAAFHYV 474 (555)
Q Consensus 451 ~i~~l~G~ya~s~g~~~~A~~~F~ 474 (555)
..++.+|......|++++|+.++.
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457888999999999999998875
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=48.39 E-value=3.1e+02 Score=27.77 Aligned_cols=92 Identities=9% Similarity=0.039 Sum_probs=61.5
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhccchhh------------hhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHH
Q 008745 419 LTRSGFVEAQEALVQMKNWFIRFPTILQ------------ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 486 (555)
Q Consensus 419 lt~~~~~~A~~~l~q~~~~~~~~P~ll~------------~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~ 486 (555)
-...|...+.+.+..+.++..+||..-. ..-..=++-.|-|..=.|.+.+|...|+..++.=+..+..
T Consensus 132 ~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~ 211 (243)
T PRK10866 132 RSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQAT 211 (243)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchH
Confidence 3445778889999999999999996432 2222334556777777899999999999988755554444
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHH
Q 008745 487 AMCHAYAAVSYFCIGDAESSSQAI 510 (555)
Q Consensus 487 ~~~~lnlAi~yL~~g~~~s~~~aL 510 (555)
.=+-..+.-+|...|.++......
T Consensus 212 ~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 212 RDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHH
Confidence 444444555666656666544433
No 166
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=47.85 E-value=64 Score=33.71 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=68.0
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlA 494 (555)
+.+-...+++++|++.+.+ ... .++. .+.=+++..+|.+|.|...|...-+..++ -.+.++..|
T Consensus 109 A~i~~~~~~~~~AL~~l~~-------~~~----lE~~--al~Vqi~L~~~R~dlA~k~l~~~~~~~eD---~~l~qLa~a 172 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHK-------GGS----LELL--ALAVQILLKMNRPDLAEKELKNMQQIDED---SILTQLAEA 172 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTT-------TTC----HHHH--HHHHHHHHHTT-HHHHHHHHHHHHCCSCC---HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc-------cCc----ccHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCc---HHHHHHHHH
Confidence 3445567999999988543 211 2222 23335566899999999999976655433 347778888
Q ss_pred HHHhhcCCc--ccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 495 VSYFCIGDA--ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 495 i~yL~~g~~--~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
.+.+..|.. .+....++-+.-.| .++ ...+...+...|.+|+++||...
T Consensus 173 wv~l~~g~e~~~~A~y~f~El~~~~---~~t------~~~lng~A~~~l~~~~~~eAe~~ 223 (290)
T PF04733_consen 173 WVNLATGGEKYQDAFYIFEELSDKF---GST------PKLLNGLAVCHLQLGHYEEAEEL 223 (290)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHCCS-----S------HHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcc---CCC------HHHHHHHHHHHHHhCCHHHHHHH
Confidence 888887762 22222332222111 111 23367788889999999999753
No 167
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.82 E-value=3.6e+02 Score=28.41 Aligned_cols=133 Identities=15% Similarity=0.146 Sum_probs=72.9
Q ss_pred HhHHHHHhhccHHHHHHHHHHhhc---cCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhh
Q 008745 10 GLADYHENKGEIGKAVKCLEAICQ---SHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (555)
Q Consensus 10 ~lAe~fr~~~~i~~ai~CLeAvl~---~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~ 86 (555)
.-|-.||...++.+|-.||+-+.+ ++. .|---|+.+=+ |-+|..+++-..|+....|||
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEq-aamLake~~klsEvvdl~eKA--------------- 97 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQ-AAMLAKELSKLSEVVDLYEKA--------------- 97 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHH---------------
Confidence 345567777777777777766552 333 22233333333 334455555555555555555
Q ss_pred hHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCCh
Q 008745 87 RTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYP 166 (555)
Q Consensus 87 ~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~ 166 (555)
+.+|...|...++.-+|.|+-+..- .-+.+.|++.-+.+.++..+.+..
T Consensus 98 ------s~lY~E~GspdtAAmaleKAak~le-------------------------nv~Pd~AlqlYqralavve~~dr~ 146 (308)
T KOG1585|consen 98 ------SELYVECGSPDTAAMALEKAAKALE-------------------------NVKPDDALQLYQRALAVVEEDDRD 146 (308)
T ss_pred ------HHHHHHhCCcchHHHHHHHHHHHhh-------------------------cCCHHHHHHHHHHHHHHHhccchH
Confidence 6678888877666556677555332 234555666666666666554442
Q ss_pred --hHHHHHHHHHHHHHhcccCchhHHHHHH
Q 008745 167 --DLQMFFATAILHVHLMQWDDENSVLRSI 194 (555)
Q Consensus 167 --~~~v~fals~~~~~L~~~~~~~~v~~~l 194 (555)
+.+.+-.+++.+|.+ +++++..-++
T Consensus 147 ~ma~el~gk~sr~lVrl---~kf~Eaa~a~ 173 (308)
T KOG1585|consen 147 QMAFELYGKCSRVLVRL---EKFTEAATAF 173 (308)
T ss_pred HHHHHHHHHhhhHhhhh---HHhhHHHHHH
Confidence 233444566666666 4454443333
No 168
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=46.61 E-value=5.2e+02 Score=32.49 Aligned_cols=150 Identities=14% Similarity=0.121 Sum_probs=98.1
Q ss_pred cHHHHHHHHHHhhc-cCCCCChhHHHHHHHHhhHHHHhhc----------------C---ChHHHHHHHHHHHHHHhcCC
Q 008745 20 EIGKAVKCLEAICQ-SHVSFLPIIEVKTRLRISTLLLKHT----------------H---NVNHAKSHLERSQLLLKAIP 79 (555)
Q Consensus 20 ~i~~ai~CLeAvl~-~~~~l~P~~EA~~rLrla~lL~e~T----------------~---N~~~AkthLEka~~l~k~i~ 79 (555)
....+|.++.-... +....||.+|+.+.||++++|..-- . .-.++-..|-|+..+. +.
T Consensus 360 ~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~--l~ 437 (1185)
T PF08626_consen 360 LYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQ--LK 437 (1185)
T ss_pred HHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhh--hh
Confidence 34567777776652 2223699999999999999998765 2 3556666676666542 22
Q ss_pred cch-hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHH---HhHHHHHHhhhc------------
Q 008745 80 SCF-ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCN---FNSQLANAFIIE------------ 143 (555)
Q Consensus 80 ~~~-dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~---f~fqlA~~~~~~------------ 143 (555)
.+. .-|+..++-||.+|...|=....-..||..+-..... . ..|+-. |+-.+...+...
T Consensus 438 ~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~~---l--~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~ 512 (1185)
T PF08626_consen 438 DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVPG---L--IHWHQSYRSLLEELCKGYGISLDPESSSEDSSK 512 (1185)
T ss_pred hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhccc---c--CCcchHHHHHHHHHhccCcccCCcccccccccc
Confidence 233 7789999999999999997776667888877766431 1 345543 333333333321
Q ss_pred ---C-ChHHHHHHHhhHHHHHhhhCChhHHHHHHHHH
Q 008745 144 ---G-DYQSSISALQSGYVCATEISYPDLQMFFATAI 176 (555)
Q Consensus 144 ---~-D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~ 176 (555)
+ ...-=+..|+.....|+..||+...+-|.+.-
T Consensus 513 ~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~L 549 (1185)
T PF08626_consen 513 GSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLL 549 (1185)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 22233566888999999999976665555443
No 169
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.04 E-value=1.1e+02 Score=34.97 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=64.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 008745 358 GLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNW 437 (555)
Q Consensus 358 g~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~ 437 (555)
|-+.-+.+|..+|++-+...|.. |+.+.-.-.-...+ .+-+|-|-....|-.|++-+|.+.+-.....
T Consensus 297 ~~y~~~~~~F~kAL~N~c~qL~~-g~~~~~~~tls~nk-----------s~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 297 GCYQASSVLFLKALRNSCSQLRN-GLKPAKTFTLSQNK-----------SMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc-cCCCCcceehhccc-----------chhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 33455667888999866666654 43333111111112 3455667788889999999999999999999
Q ss_pred HHhccchh-hhhhhHHHHHHHHHHHHh
Q 008745 438 FIRFPTIL-QACESMIEMLRGQYAHSV 463 (555)
Q Consensus 438 ~~~~P~ll-~~~~~~i~~l~G~ya~s~ 463 (555)
|++.|++. |--+|.|--+.|---..+
T Consensus 365 fh~nPrlWLRlAEcCima~~~~l~ee~ 391 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIMALQKGLLEEG 391 (696)
T ss_pred HhcCcHHHHHHHHHHHHHhhhhhhhhc
Confidence 99999975 677888777666544433
No 170
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=44.75 E-value=5.6e+02 Score=30.24 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=83.4
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 008745 349 MVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ 428 (555)
Q Consensus 349 lsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~ 428 (555)
+-++..|.--.+++|.|++..|++. . .+ +..||+--.++..+|=-++ ...
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~----------~-----~d--N~qilrDlslLQ~QmRd~~-------------~~~ 129 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKI----------E-----KD--NLQILRDLSLLQIQMRDYE-------------GYL 129 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhc----------C-----CC--cHHHHHHHHHHHHHHHhhh-------------hHH
Confidence 3355566667778888888777765 2 22 2778876666544444333 221
Q ss_pred HHHHHHHHHHHhccc--hhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh--HHHHHHHHHHHHHhhcCCcc
Q 008745 429 EALVQMKNWFIRFPT--ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--MQAMCHAYAAVSYFCIGDAE 504 (555)
Q Consensus 429 ~~l~q~~~~~~~~P~--ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~--~~~~~~lnlAi~yL~~g~~~ 504 (555)
.+=.++ .+-.|+ -....-..-+.+.|-|.++.+-+++-+. ....+.+.. -...+.++-+.+.+-.|.
T Consensus 130 ~tr~~L---Lql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~----t~~~~~s~~~~e~se~~Ly~n~i~~E~g~-- 200 (700)
T KOG1156|consen 130 ETRNQL---LQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEK----TQNTSPSKEDYEHSELLLYQNQILIEAGS-- 200 (700)
T ss_pred HHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhccCCCHHHHHHHHHHHHHHHHHHHccc--
Confidence 111111 122232 1122445556667777666665554332 222222222 234667777666655444
Q ss_pred cHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhh
Q 008745 505 SSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARL 551 (555)
Q Consensus 505 s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~ 551 (555)
...+++-+.- ....+-++-++.-..|-..|+++++.||..
T Consensus 201 -~q~ale~L~~------~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 201 -LQKALEHLLD------NEKQIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred -HHHHHHHHHh------hhhHHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 3333332211 122334455667778888999999999864
No 171
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=43.16 E-value=1.2e+02 Score=26.25 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=45.7
Q ss_pred HHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCc
Q 008745 43 EVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIP 103 (555)
Q Consensus 43 EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~ 103 (555)
+|+.+++=|-=|| ++++...|-.-.+++ ++.+++..| ||.+--.|++.|.-.|...
T Consensus 5 ~ak~~ie~GlkLY-~~~~~~~Al~~W~~a---L~k~~~~~~-rf~~lG~l~qA~~e~Gkyr 60 (80)
T PF10579_consen 5 QAKQQIEKGLKLY-HQNETQQALQKWRKA---LEKITDRED-RFRVLGYLIQAHMEWGKYR 60 (80)
T ss_pred HHHHHHHHHHHHh-ccchHHHHHHHHHHH---HhhcCChHH-HHHHHHHHHHHHHHHHHHH
Confidence 5677777776677 888899999988888 666767555 9999999999999999764
No 172
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=42.94 E-value=46 Score=33.89 Aligned_cols=60 Identities=27% Similarity=0.318 Sum_probs=46.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHhhcCCccc----HHHHHHhhCcc
Q 008745 456 RGQYAHSVGCYSEAAFHYVEAAKITESK--SMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPV 516 (555)
Q Consensus 456 ~G~ya~s~g~~~~A~~~F~~A~k~t~s~--~~~~~~~lnlAi~yL~~g~~~s----~~~aL~li~P~ 516 (555)
.|-=....|+|++|..-|++|+..+.+- ..|.+|-.|.|...|-.+.-++ ++.+++ ++|-
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie-l~pt 166 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE-LNPT 166 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh-cCch
Confidence 3445567899999999999999887554 6888999998888887666543 778887 5774
No 173
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.57 E-value=3.7e+02 Score=31.12 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh-hHHHHHHHHHHHHHhhcCCc--c--c-HHHHHHhhCcccccc-
Q 008745 448 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-SMQAMCHAYAAVSYFCIGDA--E--S-SSQAIDLIGPVYQMK- 520 (555)
Q Consensus 448 ~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~-~~~~~~~lnlAi~yL~~g~~--~--s-~~~aL~li~P~~~~~- 520 (555)
..+=++..+|+....-|+|+.|..-|++|+..-.+. .+|.=...-+ . . |++ + + +.++|+ +.|-|..-
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL--A--N-~~~s~EAIsAY~rALq-LqP~yVR~R 501 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATL--A--N-GNRSEEAISAYNRALQ-LQPGYVRVR 501 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHh--c--C-CcccHHHHHHHHHHHh-cCCCeeeee
Confidence 567889999999999999999999999998655443 4553111110 0 1 332 2 2 677777 46643322
Q ss_pred ----cc--ccchhHHHHHHHHHHHHHHhhcC
Q 008745 521 ----DT--INGVREEASLHFAYGLLLMRQQD 545 (555)
Q Consensus 521 ----~~--~~~~~~ka~~~fv~gl~~~~q~~ 545 (555)
.+ ..|--+.|+-+|+.+|...+.++
T Consensus 502 yNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 502 YNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 12 24444677778888777666644
No 174
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=39.30 E-value=61 Score=22.22 Aligned_cols=28 Identities=25% Similarity=0.068 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 008745 452 IEMLRGQYAHSVGCYSEAAFHYVEAAKI 479 (555)
Q Consensus 452 i~~l~G~ya~s~g~~~~A~~~F~~A~k~ 479 (555)
...-+|.+....|++++|+..|..++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 3456788899999999999999988754
No 175
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=39.29 E-value=7.3e+02 Score=30.52 Aligned_cols=133 Identities=16% Similarity=0.084 Sum_probs=82.7
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhc-------
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKA------- 77 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~------- 77 (555)
..++..|.......+++..|+.=+++.++..| -+ .+..+-+|. |+...++.++|-.- ++......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P---~~--i~~yy~~G~-l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHK---KS--ISALYISGI-LSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---cc--eehHHHHHH-HHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 46777888888888999999999998887654 23 334566677 55555554443322 22211111
Q ss_pred ------CCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHH
Q 008745 78 ------IPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSIS 151 (555)
Q Consensus 78 ------i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~ 151 (555)
|..+.+=|+ |.+-||.||-++|....+..+..+.++.-..++... -.+|..+..+ |.+.|.+
T Consensus 103 e~~~~~i~~~~~~k~-Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aL----------Nn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 103 EHICDKILLYGENKL-ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIV----------KKLATSYEEE-DKEKAIT 170 (906)
T ss_pred HHHHHHHHhhhhhhH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHH----------HHHHHHHHHh-hHHHHHH
Confidence 112223334 899999999999998877777777777643322222 2345555555 7777777
Q ss_pred HHhhHH
Q 008745 152 ALQSGY 157 (555)
Q Consensus 152 ~L~~g~ 157 (555)
...+..
T Consensus 171 m~~KAV 176 (906)
T PRK14720 171 YLKKAI 176 (906)
T ss_pred HHHHHH
Confidence 777633
No 176
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=39.08 E-value=1.5e+02 Score=29.41 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=39.9
Q ss_pred HHHHHHHhHHHHHh----hccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhh---cCChHHHHHHHHHHH
Q 008745 4 VAEGLWGLADYHEN----KGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKH---THNVNHAKSHLERSQ 72 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~----~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~---T~N~~~AkthLEka~ 72 (555)
|..+|+.||. |++ ..-|..||.=||.+++-+| -.-+|. .=+|..+..+ |....+|+.++++|.
T Consensus 31 WG~ALLELAq-fk~g~es~~miedAisK~eeAL~I~P---~~hdAl--w~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 31 WGGALLELAQ-FKQGPESKKMIEDAISKFEEALKINP---NKHDAL--WCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHH-HS-HHHHHHHHHHHHHHHHHHHHH-T---T-HHHH--HHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHh-ccCcchHHHHHHHHHHHHHHHHhcCC---chHHHH--HHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 5568888887 333 2378899999999998764 333444 4456655544 667778999998883
No 177
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=37.90 E-value=2.3e+02 Score=32.83 Aligned_cols=132 Identities=14% Similarity=0.093 Sum_probs=80.5
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008745 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (555)
Q Consensus 351 vi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~ 430 (555)
+|.-+.-|+++-|+||+..|+. |-|+ -+ +++=| +.++.-+..+|.+|.+-
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~a----------i~P~--------Dp-----------lv~~E-lgvvay~~~~y~~A~~~ 436 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALA----------IAPS--------DP-----------LVLHE-LGVVAYTYEEYPEALKY 436 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHh----------cCCC--------cc-----------hhhhh-hhheeehHhhhHHHHHH
Confidence 5555667888889988865544 3444 11 11112 35566677888888877
Q ss_pred HHHHHHHHHhc-cchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCccc----
Q 008745 431 LVQMKNWFIRF-PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES---- 505 (555)
Q Consensus 431 l~q~~~~~~~~-P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s---- 505 (555)
+....+..... |... .-+| +.-.+|+.+--.|.+++|..-|+.|+.+.+.. ....+. .+.+|...|+.+.
T Consensus 437 f~~~l~~ik~~~~e~~-~w~p-~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-~~~~as--ig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 437 FQKALEVIKSVLNEKI-FWEP-TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-ASTHAS--IGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHhhhcccccc-chhH-HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-hhHHHH--HHHHHHHhcChHHHHHH
Confidence 66666433332 2211 1233 34678999999999999999999999766543 333332 3455555566543
Q ss_pred HHHHHHhhCcccc
Q 008745 506 SSQAIDLIGPVYQ 518 (555)
Q Consensus 506 ~~~aL~li~P~~~ 518 (555)
+..+|. +.|.+.
T Consensus 512 fhKaL~-l~p~n~ 523 (611)
T KOG1173|consen 512 FHKALA-LKPDNI 523 (611)
T ss_pred HHHHHh-cCCccH
Confidence 555653 566643
No 178
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=36.50 E-value=6.1e+02 Score=27.79 Aligned_cols=176 Identities=15% Similarity=0.216 Sum_probs=107.6
Q ss_pred ccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 008745 335 EWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENK 414 (555)
Q Consensus 335 ~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~ 414 (555)
+|=|+=.-..||++.-++. +.-+..++|-+|+++-.+.+++ .. |+ -++| ++.+ | +
T Consensus 67 efe~kINplslvei~l~~~-~~~~D~~~al~~Le~i~~~~~~----~~------e~----~av~--------~~~t-~-~ 121 (380)
T KOG2908|consen 67 EFETKINPLSLVEILLVVS-EQISDKDEALEFLEKIIEKLKE----YK------EP----DAVI--------YILT-E-I 121 (380)
T ss_pred HHhhccChHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHh----hc------cc----hhHH--------HHHH-H-H
Confidence 4555555566777665544 4445788999999877666433 11 11 2344 2332 2 4
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh-----hHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-----SMQAMC 489 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~-----~~~~~~ 489 (555)
+-+.|--+|..++-+.|.+.+++.+..+.......+--..+..+|..-.|+|..+=.|-..=+..++.. +.++.+
T Consensus 122 ~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA 201 (380)
T KOG2908|consen 122 ARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYLGCSDIDDLSESEKQDLA 201 (380)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccccccccCHHHHHHHH
Confidence 677888999999999999999999999887766777778899999999999987765544333333221 122222
Q ss_pred -HHHHHHHHhhcCCcc-cHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcCh
Q 008745 490 -HAYAAVSYFCIGDAE-SSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDF 546 (555)
Q Consensus 490 -~lnlAi~yL~~g~~~-s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~ 546 (555)
-|-.|.. . |+.= .+..+|. -|+..+ ..|-+++ ....=+.+|..||+
T Consensus 202 ~~L~~aAL--L-Ge~iyNfGELL~--HPiles---L~gT~~e---WL~dll~Afn~Gdl 249 (380)
T KOG2908|consen 202 FDLSLAAL--L-GENIYNFGELLA--HPILES---LKGTNRE---WLKDLLIAFNSGDL 249 (380)
T ss_pred HHHHHHHH--h-ccccccHHHHHh--hHHHHH---hcCCcHH---HHHHHHHHhccCCH
Confidence 2222222 2 5533 2566553 565333 3333334 45555667777774
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.35 E-value=1.2e+02 Score=32.21 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=64.3
Q ss_pred HHhHHHHHhhc-------cHHHHHHHHHHhhccCCCCCh--hHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCC
Q 008745 9 WGLADYHENKG-------EIGKAVKCLEAICQSHVSFLP--IIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIP 79 (555)
Q Consensus 9 l~lAe~fr~~~-------~i~~ai~CLeAvl~~~~~l~P--~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~ 79 (555)
..+||.+...| ++..||.|+..+++..|+=+- ---|-+..||+ +|++=+..+|+.+
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg----~~~~AVkDce~Al----------- 142 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG----EYEDAVKDCESAL----------- 142 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc----chHHHHHHHHHHH-----------
Confidence 46788888877 889999999999987652121 22455666665 3444555555555
Q ss_pred cchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHH
Q 008745 80 SCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDL 115 (555)
Q Consensus 80 ~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~ 115 (555)
..+.-=.+++.=|...|.-.|....+-.+-+||+++
T Consensus 143 ~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 143 SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred hcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 334555678999999999999886666666788875
No 180
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=34.40 E-value=7.9e+02 Score=28.47 Aligned_cols=144 Identities=9% Similarity=0.099 Sum_probs=82.5
Q ss_pred HhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHH--hhcCChHHHHHHHHHHHHHHhcCCcchhhhhh
Q 008745 10 GLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLL--KHTHNVNHAKSHLERSQLLLKAIPSCFELKCR 87 (555)
Q Consensus 10 ~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~--e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~ 87 (555)
.+-+.+...+++..|+..++......+ +.|...+ |..+|- -...+.+.|+..+..... .++. .| ..
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~-~~~~~~t-----~~~ll~a~~~~~~~~~a~~l~~~m~~--~g~~--~~--~~ 159 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGCP-FTLPAST-----YDALVEACIALKSIRCVKAVYWHVES--SGFE--PD--QY 159 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCCHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHH--hCCC--cc--hH
Confidence 445666777889999999988775432 2333322 222222 234577888877754321 2221 13 34
Q ss_pred HHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChh
Q 008745 88 TFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPD 167 (555)
Q Consensus 88 a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~ 167 (555)
.+..|.++|.+.|....+..++.+ +.. .....|. -+...+...|++..|++.++.-. ...-.|.
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~----m~~----~~~~t~n-----~li~~~~~~g~~~~A~~lf~~M~---~~g~~p~ 223 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDE----MPE----RNLASWG-----TIIGGLVDAGNYREAFALFREMW---EDGSDAE 223 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhc----CCC----CCeeeHH-----HHHHHHHHCcCHHHHHHHHHHHH---HhCCCCC
Confidence 567777999999977655444332 211 1122342 24566777899999999988643 2222344
Q ss_pred HHHHHHHHHHHHHh
Q 008745 168 LQMFFATAILHVHL 181 (555)
Q Consensus 168 ~~v~fals~~~~~L 181 (555)
...+..+.++...+
T Consensus 224 ~~t~~~ll~a~~~~ 237 (697)
T PLN03081 224 PRTFVVMLRASAGL 237 (697)
T ss_pred hhhHHHHHHHHhcC
Confidence 55555555555544
No 181
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=34.23 E-value=2.8e+02 Score=32.93 Aligned_cols=106 Identities=18% Similarity=0.216 Sum_probs=62.2
Q ss_pred HhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhH
Q 008745 55 LKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNS 134 (555)
Q Consensus 55 ~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~f 134 (555)
.-+-+|+++|..-||.| +|.-|.|..+ +-+|.++|++++....++.+-..|+...= +..++| .
T Consensus 661 er~ld~~eeA~rllEe~---lk~fp~f~Kl----~lmlGQi~e~~~~ie~aR~aY~~G~k~cP-----~~ipLW-----l 723 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEA---LKSFPDFHKL----WLMLGQIEEQMENIEMAREAYLQGTKKCP-----NSIPLW-----L 723 (913)
T ss_pred HHHhhhHHHHHHHHHHH---HHhCCchHHH----HHHHhHHHHHHHHHHHHHHHHHhccccCC-----CCchHH-----H
Confidence 34567888888888777 5666666544 55677888877766544443333333221 124477 4
Q ss_pred HHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHh
Q 008745 135 QLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHL 181 (555)
Q Consensus 135 qlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L 181 (555)
.||.+--..|..+-|-..|+.|- --|-.-.......++.-+..
T Consensus 724 lLakleEk~~~~~rAR~ildrar----lkNPk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRAR----LKNPKNALLWLESIRMELRA 766 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHH----hcCCCcchhHHHHHHHHHHc
Confidence 57777667778888888888753 23333333344444444433
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=33.54 E-value=3.2e+02 Score=28.13 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh-H
Q 008745 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-M 485 (555)
Q Consensus 407 ~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~-~ 485 (555)
....+| .....|...|.+........+-..+. -+++|+ -|....|+.++|-..|..++....... +
T Consensus 40 ~~A~~E-----~~~~~d~~~A~~Ife~glk~f~~~~~------~~~~Y~--~~l~~~~d~~~aR~lfer~i~~l~~~~~~ 106 (280)
T PF05843_consen 40 AYALME-----YYCNKDPKRARKIFERGLKKFPSDPD------FWLEYL--DFLIKLNDINNARALFERAISSLPKEKQS 106 (280)
T ss_dssp HHHHHH-----HHTCS-HHHHHHHHHHHHHHHTT-HH------HHHHHH--HHHHHTT-HHHHHHHHHHHCCTSSCHHHC
T ss_pred HHHHHH-----HHhCCCHHHHHHHHHHHHHHCCCCHH------HHHHHH--HHHHHhCcHHHHHHHHHHHHHhcCchhHH
Confidence 445556 44457777788887776655444333 356666 466788999999999999987766666 6
Q ss_pred HHHHHHHHHHHHhhcCCcc
Q 008745 486 QAMCHAYAAVSYFCIGDAE 504 (555)
Q Consensus 486 ~~~~~lnlAi~yL~~g~~~ 504 (555)
+.+..-.+..-.-. ||-+
T Consensus 107 ~~iw~~~i~fE~~~-Gdl~ 124 (280)
T PF05843_consen 107 KKIWKKFIEFESKY-GDLE 124 (280)
T ss_dssp HHHHHHHHHHHHHH-S-HH
T ss_pred HHHHHHHHHHHHHc-CCHH
Confidence 66665554444433 5543
No 183
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.09 E-value=2.5e+02 Score=28.50 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCccc
Q 008745 278 SRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSY 313 (555)
Q Consensus 278 ~~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~ 313 (555)
++....++.+.++||++++..+... .+.++|-.-.
T Consensus 54 E~ALk~a~~~i~eLe~ri~~lq~~~-~~sgsFLs~~ 88 (233)
T COG3416 54 EQALKKASTQIKELEKRIAILQAGE-AGSGSFLSNA 88 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-CCCcchhhhh
Confidence 6667788889999999998877643 4466655333
No 184
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=31.54 E-value=1.9e+02 Score=31.45 Aligned_cols=101 Identities=21% Similarity=0.284 Sum_probs=57.5
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~ 82 (555)
+||..--.||....-+++.-.|+.-++-+++-.+ .=+|+.+.+|+|.+.. .|..-|-.+||+. ..+-|
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-----~cvRAsi~lG~v~~~~-g~y~~AV~~~e~v---~eQn~--- 245 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADK-----KCVRASIILGRVELAK-GDYQKAVEALERV---LEQNP--- 245 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-----cceehhhhhhHHHHhc-cchHHHHHHHHHH---HHhCh---
Confidence 3555555666666666666666666666666544 2245566666655432 2344455555444 22322
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHH
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDL 115 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~ 115 (555)
|.--+..-.|..||++.|..+...+-|+++++.
T Consensus 246 ~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 246 EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 333344556777777777776666666666553
No 185
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=30.58 E-value=2.2e+02 Score=32.05 Aligned_cols=66 Identities=15% Similarity=-0.006 Sum_probs=53.3
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHH-HHHHHhhHHHHhhcCChHHHHHHHHHHHHH
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEV-KTRLRISTLLLKHTHNVNHAKSHLERSQLL 74 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA-~~rLrla~lL~e~T~N~~~AkthLEka~~l 74 (555)
+.+...++-.+...+++..||.|++.++..+| -..|| -++..+|..+-. ..|.++|..+|++|..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P---d~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNP---NPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 56677888888889999999999999998765 23455 567777776654 68999999999999765
No 186
>PLN03218 maturation of RBCL 1; Provisional
Probab=30.36 E-value=1.2e+03 Score=29.24 Aligned_cols=63 Identities=11% Similarity=0.008 Sum_probs=40.8
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~ 484 (555)
+-.-+-.+++++|.+.+.+|++.. -.|+.. ++..+| .-+...|+++.|...|....+.--.++
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~~G-i~Pd~~-Ty~sLL-----~a~~k~G~le~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKRLG-LCPNTI-TYSILL-----VASERKDDADVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCCHH-HHHHHH-----HHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 334556789999999999887542 235431 233333 234568899999999998877554444
No 187
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=30.01 E-value=8.9e+02 Score=27.74 Aligned_cols=89 Identities=18% Similarity=0.133 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcc-c-HHHHHHhh---Ccccccc---
Q 008745 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE-S-SSQAIDLI---GPVYQMK--- 520 (555)
Q Consensus 449 ~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~-s-~~~aL~li---~P~~~~~--- 520 (555)
.+-|-...|.......|||.|+..|..-.|. +|=.-+=.-++++++|++..+.. + +.+-...| +|+ +.+
T Consensus 261 ~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~E-TCCiIa 337 (559)
T KOG1155|consen 261 SMYIKTQIAAASYNQRDFDQAESVFEEIRKN--DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPE-TCCIIA 337 (559)
T ss_pred cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCcc-ceeeeh
Confidence 3556778889999999999999999988765 33222344677889999954322 3 44444334 465 222
Q ss_pred --ccccchhHHHHHHHHHHHHH
Q 008745 521 --DTINGVREEASLHFAYGLLL 540 (555)
Q Consensus 521 --~~~~~~~~ka~~~fv~gl~~ 540 (555)
-|..+-+|||.-||-.++.+
T Consensus 338 NYYSlr~eHEKAv~YFkRALkL 359 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKL 359 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhc
Confidence 13455669999999887754
No 188
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=29.74 E-value=3.2e+02 Score=26.19 Aligned_cols=28 Identities=14% Similarity=0.193 Sum_probs=21.3
Q ss_pred HHHHHhHHHHHhhc---cHHHHHHHHHHhhc
Q 008745 6 EGLWGLADYHENKG---EIGKAVKCLEAICQ 33 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~---~i~~ai~CLeAvl~ 33 (555)
...+.+|=.+..+. +|..||.|||.+++
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~ 63 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLK 63 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhh
Confidence 34555665555554 99999999999998
No 189
>PF10876 DUF2669: Protein of unknown function (DUF2669); InterPro: IPR020351 This entry represents various uncharacterised proteins, which include a 15.3kDa protein from Haemophilus phage Aaphi23.
Probab=29.42 E-value=79 Score=29.59 Aligned_cols=52 Identities=13% Similarity=-0.023 Sum_probs=40.7
Q ss_pred HHHHhhcC-ChHHHHHHHHHHHHHHhcC--CcchhhhhhHHHHHHHHHHHcCCCc
Q 008745 52 TLLLKHTH-NVNHAKSHLERSQLLLKAI--PSCFELKCRTFSLLSQCYHLVGAIP 103 (555)
Q Consensus 52 ~lL~e~T~-N~~~AkthLEka~~l~k~i--~~~~dlK~~a~sLLa~~y~~~~~~~ 103 (555)
.|.|++|. |..+|++||.++.-++++. ...-|-+--+..-++-++-..|...
T Consensus 5 ~I~Y~mtpaNa~~aw~~lkk~~~ll~g~~~~~~G~~~~~~~~~vg~ilsnlG~~e 59 (133)
T PF10876_consen 5 NITYEMTPANAIEAWAALKKALGLLQGCDISNNGNGVDIAAIDVGAILSNLGSPE 59 (133)
T ss_pred CceeeechhHHHHHHHHHHHHHHHHhcCchhccCCccchHHHHHHHHHHhcCCHH
Confidence 46778887 9999999999999999886 3333555567788888888888664
No 190
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=29.34 E-value=6.3e+02 Score=25.81 Aligned_cols=119 Identities=13% Similarity=0.028 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008745 341 AVYALVDLMVVILGRPKG-LFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVEL 419 (555)
Q Consensus 341 ~l~aLvyllsvi~~~~kg-~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~l 419 (555)
.+.-++|-+. .....++ .++.|-+.++.+.+.+ ++++-.+.. ..+ +-.|++.+|-.++-+.+
T Consensus 33 ~La~~~yn~G-~~l~~~~~~~~~a~~wL~~a~~~l----~~~~~~~~~-~~~-----------~~elr~~iL~~La~~~l 95 (278)
T PF08631_consen 33 ELARVCYNIG-KSLLSKKDKYEEAVKWLQRAYDIL----EKPGKMDKL-SPD-----------GSELRLSILRLLANAYL 95 (278)
T ss_pred HHHHHHHHHH-HHHHHcCCChHHHHHHHHHHHHHH----Hhhhhcccc-CCc-----------HHHHHHHHHHHHHHHHH
Confidence 3444444444 4444455 9999999999999994 443222110 111 11124444444577777
Q ss_pred hhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 008745 420 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (555)
Q Consensus 420 t~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~ 481 (555)
-.++++...+.+.-+...-..+|.-+..+-=-++.+.+ .++.++++..+...++...
T Consensus 96 ~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~-----~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 96 EWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK-----SFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred cCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc-----cCChhHHHHHHHHHHHhcc
Confidence 77777766666655555566666643334344555555 8999999999998887655
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.96 E-value=2.7e+02 Score=29.62 Aligned_cols=113 Identities=14% Similarity=0.074 Sum_probs=0.0
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 008745 353 LGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALV 432 (555)
Q Consensus 353 ~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~ 432 (555)
.+|+.|+.+-|++|.+..=+- =.||.-..+ .++++-|+.++-++.-++++|-..--
T Consensus 221 ~~MQ~GD~k~a~~yf~~vek~----~~kL~~~q~--------------------~~~V~~n~a~i~lg~nn~a~a~r~~~ 276 (366)
T KOG2796|consen 221 ISMQIGDIKTAEKYFQDVEKV----TQKLDGLQG--------------------KIMVLMNSAFLHLGQNNFAEAHRFFT 276 (366)
T ss_pred HHHhcccHHHHHHHHHHHHHH----Hhhhhccch--------------------hHHHHhhhhhheecccchHHHHHHHh
Q ss_pred HHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 008745 433 QMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 497 (555)
Q Consensus 433 q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~y 497 (555)
++..+=.+.|.-...-. ++.+.+|+...|..+..++...-..+.+-.-.-+|+--.|
T Consensus 277 ~i~~~D~~~~~a~NnKA--------LcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 277 EILRMDPRNAVANNNKA--------LCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hccccCCCchhhhchHH--------HHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
No 192
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=28.95 E-value=7.8e+02 Score=27.60 Aligned_cols=142 Identities=14% Similarity=0.017 Sum_probs=84.2
Q ss_pred HHhhcCCh-HHHHHHHHHHHHHHhcCC--cchhhhhhHHHHHHHHHHHcC-CCchHhHHHHHHHHHhhhhhcccccchhH
Q 008745 54 LLKHTHNV-NHAKSHLERSQLLLKAIP--SCFELKCRTFSLLSQCYHLVG-AIPPQKLILYKALDLTSSASQDVAVKLWS 129 (555)
Q Consensus 54 L~e~T~N~-~~AkthLEka~~l~k~i~--~~~dlK~~a~sLLa~~y~~~~-~~~~~k~~L~k~i~~s~~~~e~~~~~~W~ 129 (555)
|...++.| -.|-+.||-++...+.-. ..++++=..+--.+ .|-+.| ..--...++.|.|.+|- +.+ ..+|-
T Consensus 198 l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~-~~Dk~gD~hYdliSA~hKSvRGSD--~dA--ALyyl 272 (436)
T COG2256 198 LVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSA-RFDKDGDAHYDLISALHKSVRGSD--PDA--ALYYL 272 (436)
T ss_pred HHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhh-ccCCCcchHHHHHHHHHHhhccCC--cCH--HHHHH
Confidence 44555533 345667777777665532 12233222222111 111222 11233446677777662 222 66888
Q ss_pred HHHh---------HHHHHHhhhc---CChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 008745 130 CNFN---------SQLANAFIIE---GDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQC 197 (555)
Q Consensus 130 ~~f~---------fqlA~~~~~~---~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~ 197 (555)
.|.+ -.+--+.++| .-...|+..--...+.+.+.|.|+-++ +++++-++|....++++|-.|.+.+
T Consensus 273 ARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~~i--~LAqavvyLA~aPKSNavY~A~~~A 350 (436)
T COG2256 273 ARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPEARI--ALAQAVVYLALAPKSNAVYTAINAA 350 (436)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCchHHH--HHHHHHHHHHhCCccHHHHHHHHHH
Confidence 7755 1222333443 123447777778889999999998885 5778888888889999999998888
Q ss_pred HHHHH
Q 008745 198 DRVWE 202 (555)
Q Consensus 198 ~~l~~ 202 (555)
.+-+.
T Consensus 351 ~~d~~ 355 (436)
T COG2256 351 LADAK 355 (436)
T ss_pred HHHHH
Confidence 77765
No 193
>PRK15331 chaperone protein SicA; Provisional
Probab=28.71 E-value=4.3e+02 Score=25.77 Aligned_cols=94 Identities=9% Similarity=0.103 Sum_probs=71.5
Q ss_pred hcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhh
Q 008745 76 KAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQS 155 (555)
Q Consensus 76 k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~ 155 (555)
+.+.+..+--.+..+-.|-=+++.|....+..+ .+.+-. ..+|..+|.+-||..+-..++|..|+..-..
T Consensus 27 k~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~-F~~L~~---------~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~ 96 (165)
T PRK15331 27 KDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETF-FRFLCI---------YDFYNPDYTMGLAAVCQLKKQFQKACDLYAV 96 (165)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHH---------hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777777788888888888998988655443 444432 3489999999999999999999999999887
Q ss_pred HHHHHhhhCChhHHHHHHHHHHHHHhcc
Q 008745 156 GYVCATEISYPDLQMFFATAILHVHLMQ 183 (555)
Q Consensus 156 g~~~A~~~~~~~~~v~fals~~~~~L~~ 183 (555)
.+.+. .+|| +.+|-..++.+.|-+
T Consensus 97 A~~l~--~~dp--~p~f~agqC~l~l~~ 120 (165)
T PRK15331 97 AFTLL--KNDY--RPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHcc--cCCC--CccchHHHHHHHhCC
Confidence 66555 3555 348999999988853
No 194
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=28.45 E-value=73 Score=36.70 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=32.4
Q ss_pred CcccccCcccccCcccccCCCCCccccccchhHHHHHHHHHHHhhC
Q 008745 310 EPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGR 355 (555)
Q Consensus 310 ~~~~~~~~~~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~ 355 (555)
..+|||||-|+++-- .....++=+|.+.+-+||++|..|.-.
T Consensus 72 kRVYFGNWLRDYSQa----vDvgtlk~v~~~~ir~lv~vLgFm~FG 113 (606)
T PF07217_consen 72 KRVYFGNWLRDYSQA----VDVGTLKKVSAETIRILVWVLGFMTFG 113 (606)
T ss_pred ceeeechhHHHHhHh----hhhhhhccCCHHHHHHHHHHHHHhhhc
Confidence 479999999976542 233446779999999999999977653
No 195
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=28.39 E-value=95 Score=20.19 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=18.2
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhcc
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQS 34 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~ 34 (555)
+++.+|.-+...++...|+.-++.+++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666666666666666666666666654
No 196
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=28.36 E-value=1.3e+03 Score=29.04 Aligned_cols=179 Identities=15% Similarity=0.030 Sum_probs=112.3
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCC--------------CCC--hhHHHHHHHHhh---------------
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHV--------------SFL--PIIEVKTRLRIS--------------- 51 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~--------------~l~--P~~EA~~rLrla--------------- 51 (555)
..+.+.-.|...+|...+..-|-||+.-++.-.+ +.+ ...++. +|+-|
T Consensus 490 ~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I-~l~~~qka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 490 SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI-CLRAAQKAPAFACKENWVQR 568 (1238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH-HHHHhhhchHHHHHhhhhhc
Confidence 4566677788888888888889999888885322 111 111222 33322
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHH
Q 008745 52 TLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCN 131 (555)
Q Consensus 52 ~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~ 131 (555)
.+++=+-+|...|-.|+.-|. +--| =-|+....|.+.|...|.+..+-.+-.|++.+ +..-| .
T Consensus 569 G~yyLea~n~h~aV~~fQsAL---R~dP----kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~--y 631 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSAL---RTDP----KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--------RPLSK--Y 631 (1238)
T ss_pred cccccCccchhhHHHHHHHHh---cCCc----hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--------CcHhH--H
Confidence 456667778888888886663 2222 23778999999999999996665555666553 12233 3
Q ss_pred HhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCC---hhHHHHHHHHHH-HHHhcccCchhHHHHHHHHHHH
Q 008745 132 FNSQLANAFIIEGDYQSSISALQSGYVCATEISY---PDLQMFFATAIL-HVHLMQWDDENSVLRSINQCDR 199 (555)
Q Consensus 132 f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~---~~~~v~fals~~-~~~L~~~~~~~~v~~~l~~~~~ 199 (555)
=+|..|-+...-|.|..|++.++++...++.--. .-.+++.+.++. ++.=.+.+..|.++.++.++.=
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4566777777889999999999987766532211 122333344433 3333444666788888766543
No 197
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=27.80 E-value=4.7e+02 Score=23.85 Aligned_cols=86 Identities=8% Similarity=0.112 Sum_probs=52.4
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Q 008745 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (555)
Q Consensus 346 vyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~ 425 (555)
-++-.+..+...|++.++...+.++...|.+....|-.-.+ .|. ...+. ++|-.+...+++ +.+.--....+
T Consensus 33 ~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~g-gei---A~nL~--~LY~y~~~~L~~--An~~~d~~~l~ 104 (124)
T TIGR00208 33 KFIRLAAQAIENDDIERKNENLIKAQNIIQELNFTLDREKN-IEL---SASLG--ALYDYMYRRLVQ--ANIKNDTSKLA 104 (124)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccc-hHH---HHHHH--HHHHHHHHHHHH--HHhhCCHHHHH
Confidence 34445666678899999999999999998775555533211 011 12223 677555555554 33333334456
Q ss_pred HHHHHHHHHHHHHH
Q 008745 426 EAQEALVQMKNWFI 439 (555)
Q Consensus 426 ~A~~~l~q~~~~~~ 439 (555)
++.+.|.++++...
T Consensus 105 ev~~~l~~Lr~aW~ 118 (124)
T TIGR00208 105 EVEGYVRDFRDAWK 118 (124)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777643
No 198
>PRK04863 mukB cell division protein MukB; Provisional
Probab=27.73 E-value=1.3e+03 Score=30.16 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=37.1
Q ss_pred HHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcc
Q 008745 253 KMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLE 299 (555)
Q Consensus 253 ~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~ 299 (555)
...-+++..+.|..+.+.|..-+.+|++..++++.+++.++..++..
T Consensus 909 a~~y~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~ 955 (1486)
T PRK04863 909 AKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAK 955 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777888888888877767779999999999999988887633
No 199
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.67 E-value=4.3e+02 Score=28.03 Aligned_cols=128 Identities=15% Similarity=0.145 Sum_probs=73.0
Q ss_pred HHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhh---------
Q 008745 48 LRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSS--------- 118 (555)
Q Consensus 48 Lrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~--------- 118 (555)
+=+|-+-+-|-.++++|.-|+++.- + .++.-|=-.|+.++.....+++.|+|..+..-.
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~-------~-----lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~a 178 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGE-------N-----LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQA 178 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccc-------h-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 4466677788889999999996531 1 122333345555666666677777776654321
Q ss_pred ------hhcccccchhH-----------HHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHh
Q 008745 119 ------ASQDVAVKLWS-----------CNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHL 181 (555)
Q Consensus 119 ------~~e~~~~~~W~-----------~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L 181 (555)
.++.+...+.. +..+.=.|-.|+..++|+.|.+.|+. ++-...++|.+ |+...++-
T Consensus 179 wv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e--aL~kd~~dpet-----L~Nliv~a 251 (299)
T KOG3081|consen 179 WVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE--ALDKDAKDPET-----LANLIVLA 251 (299)
T ss_pred HHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH--HHhccCCCHHH-----HHHHHHHH
Confidence 01111111111 12223345678889999999999998 56677788754 34444422
Q ss_pred c-ccCchhHHHHHH
Q 008745 182 M-QWDDENSVLRSI 194 (555)
Q Consensus 182 ~-~~~~~~~v~~~l 194 (555)
. ...+++.+++-+
T Consensus 252 ~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 252 LHLGKDAEVTERNL 265 (299)
T ss_pred HHhCCChHHHHHHH
Confidence 2 234445555544
No 200
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.47 E-value=2.3e+02 Score=30.26 Aligned_cols=68 Identities=18% Similarity=0.110 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh
Q 008745 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (555)
Q Consensus 409 ~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~ 484 (555)
++++|.+.+.+--++++.|++...-...+ -|.- +-..--+|+-.-+.|++++|+.-|+.|+-+=.+.+
T Consensus 116 VyycNRAAAy~~Lg~~~~AVkDce~Al~i---Dp~y-----skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 116 VYYCNRAAAYSKLGEYEDAVKDCESALSI---DPHY-----SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHhc---ChHH-----HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 34577888888888999998873333322 2332 22333468888999999999999999987765544
No 201
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.43 E-value=8.5e+02 Score=26.68 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=48.3
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHH
Q 008745 418 ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 487 (555)
Q Consensus 418 ~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~ 487 (555)
.+.=+|...-.+.|.-+++++++=.+--+ ..-+-.-.|+|++|+++|.+|+..|..++.+-+|.++-.
T Consensus 151 glfy~D~~lV~~~iekak~liE~GgDWeR--rNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~ 218 (393)
T KOG0687|consen 151 GLFYLDHDLVTESIEKAKSLIEEGGDWER--RNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMS 218 (393)
T ss_pred HHhhccHHHHHHHHHHHHHHHHhCCChhh--hhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceeccc
Confidence 33445666666666666666665544322 223445579999999999999999999999888887654
No 202
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.30 E-value=8.5e+02 Score=26.66 Aligned_cols=169 Identities=18% Similarity=0.237 Sum_probs=98.7
Q ss_pred HHhhHHHHhhcC----C-hHHHHHHHHHHHHHHhcCCcchhhhhhH------HHHHHHHHHHcCCCchHhHHHHHHHHHh
Q 008745 48 LRISTLLLKHTH----N-VNHAKSHLERSQLLLKAIPSCFELKCRT------FSLLSQCYHLVGAIPPQKLILYKALDLT 116 (555)
Q Consensus 48 Lrla~lL~e~T~----N-~~~AkthLEka~~l~k~i~~~~dlK~~a------~sLLa~~y~~~~~~~~~k~~L~k~i~~s 116 (555)
|.++...|.-|+ | ..+++.||+.+.. -..+.-+++.-|+- +.+|..+- +.|... .|. |.+.|+-+
T Consensus 19 le~sq~~FlLt~p~~~~~~~~~~e~l~~~Ir-d~~Map~Ye~lce~~~i~~D~~~l~~m~-~~neek-i~e-ld~~ieda 94 (393)
T KOG0687|consen 19 LELSQLRFLLTHPEVLGQKAAAREKLLAAIR-DEDMAPLYEYLCESLVIKLDQDLLNSMK-KANEEK-IKE-LDEKIEDA 94 (393)
T ss_pred hhHHHHHHHHcCccccCcCHHHHHHHHHHHH-hcccchHHHHHHhhcceeccHHHHHHHH-HhhHHH-HHH-HHHHHHHH
Confidence 455666665554 3 5678889977742 23343333333321 33455443 323222 111 24444433
Q ss_pred hhh-hcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHH
Q 008745 117 SSA-SQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSIN 195 (555)
Q Consensus 117 ~~~-~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~ 195 (555)
... +|.+-...| ...|+-+..=||-+.|++.+.+-.+-+-..|.+ +.|+|..++.=+-- -|.+-|++.+.
T Consensus 95 eenlGE~ev~ea~-----~~kaeYycqigDkena~~~~~~t~~ktvs~g~k-iDVvf~~iRlglfy---~D~~lV~~~ie 165 (393)
T KOG0687|consen 95 EENLGESEVREAM-----LRKAEYYCQIGDKENALEALRKTYEKTVSLGHK-IDVVFYKIRLGLFY---LDHDLVTESIE 165 (393)
T ss_pred HHhcchHHHHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc-hhhHHHHHHHHHhh---ccHHHHHHHHH
Confidence 211 122222233 345666777799999999999988888888865 89999998876544 34678888888
Q ss_pred HHHHHHHhcCccccccccchhhhhHHHHHHH---HHhhhhhhhhhh
Q 008745 196 QCDRVWESIDPNRRGQCLGLLFYNELLHIFY---RLRICDYKNAAH 238 (555)
Q Consensus 196 ~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy---~lrvc~y~~a~~ 238 (555)
.+..+++. -+-|- -+.-+|||+ ..-|=+||.|+.
T Consensus 166 kak~liE~-----GgDWe----RrNRlKvY~Gly~msvR~Fk~Aa~ 202 (393)
T KOG0687|consen 166 KAKSLIEE-----GGDWE----RRNRLKVYQGLYCMSVRNFKEAAD 202 (393)
T ss_pred HHHHHHHh-----CCChh----hhhhHHHHHHHHHHHHHhHHHHHH
Confidence 89988871 01221 255677766 444556666665
No 203
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=27.29 E-value=3.5e+02 Score=27.22 Aligned_cols=72 Identities=22% Similarity=0.276 Sum_probs=40.6
Q ss_pred hHHHHHHHHH--------HHhhCCCCChH--HHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHH
Q 008745 341 AVYALVDLMV--------VILGRPKGLFK--ECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQF 410 (555)
Q Consensus 341 ~l~aLvylls--------vi~~~~kg~~~--kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~l 410 (555)
--|.+||++. ++++...|-+. +.+.++.+|-+.| +++|- +.
T Consensus 117 lGy~~v~LL~~yD~L~~~v~~a~h~glis~~~~~~~l~~~~~~i-------------------------R~v~~---~~- 167 (217)
T PF08900_consen 117 LGYRCVYLLVDYDQLARKVLTAWHYGLISRQEREDWLRRGGRAI-------------------------RRVFG---LA- 167 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH-------------------------HHHHH---HH-
Confidence 3455666665 67777777773 4455555555543 34441 11
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 008745 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFP 442 (555)
Q Consensus 411 LE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P 442 (555)
+.--...+||.|+.+......++++.+-..|
T Consensus 168 -~~yr~~gvtR~D~~~~n~~~~~A~~~~G~~p 198 (217)
T PF08900_consen 168 -QRYRHSGVTRDDFAANNARAQAAIERFGELP 198 (217)
T ss_pred -HHHhccCCCHHHHHhcCHHHHHHHHHcCCCC
Confidence 1113457788888766666666655554444
No 204
>PRK05685 fliS flagellar protein FliS; Validated
Probab=27.07 E-value=5e+02 Score=23.89 Aligned_cols=84 Identities=14% Similarity=0.241 Sum_probs=52.1
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008745 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (555)
Q Consensus 351 vi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~ 430 (555)
...+...|.++++...+.++...|.+....|-...+ +++ ...+ .++|-.+.-.+.+ +.+.--....+++.+.
T Consensus 42 A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~g---gei-A~~L--~~LY~y~~~~L~~--A~~~~d~~~l~ev~~i 113 (132)
T PRK05685 42 AKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKG---GEV-AKNL--SALYDYMIRRLLE--ANLRNDVQAIDEVEGL 113 (132)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccc---cHH-HHHH--HHHHHHHHHHHHH--HHHhCCHHHHHHHHHH
Confidence 445567799999999999999998776555543221 111 1222 3777655555544 3333334556688888
Q ss_pred HHHHHHHHHhcc
Q 008745 431 LVQMKNWFIRFP 442 (555)
Q Consensus 431 l~q~~~~~~~~P 442 (555)
+.++++..+.-+
T Consensus 114 l~~LreaW~~i~ 125 (132)
T PRK05685 114 LREIKEAWKQIP 125 (132)
T ss_pred HHHHHHHHHHHH
Confidence 888888765543
No 205
>TIGR03761 ICE_PFL4669 integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=26.92 E-value=3.5e+02 Score=27.45 Aligned_cols=74 Identities=23% Similarity=0.325 Sum_probs=43.5
Q ss_pred HHHHHHHH--------HHhhCCCCChH--HHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHH
Q 008745 343 YALVDLMV--------VILGRPKGLFK--ECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLE 412 (555)
Q Consensus 343 ~aLvylls--------vi~~~~kg~~~--kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE 412 (555)
|.+||++. ++++...|.+. +++..+..|-+.|+..+... +
T Consensus 117 y~~v~LL~d~D~l~r~~l~a~h~glisr~~~~~~l~~g~~~vR~vf~~~------------------------------~ 166 (216)
T TIGR03761 117 YRAVYLLVDYDQLARRVLLAHHYGLISRQDLEDWLDKGAHLIRRLFGLA------------------------------Q 166 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH------------------------------H
Confidence 55666655 88888888884 56666666666654432211 1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhcc-chhh
Q 008745 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFP-TILQ 446 (555)
Q Consensus 413 ~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P-~ll~ 446 (555)
+-=...+||.|+.+....-.++++.+-..| .++.
T Consensus 167 ~yr~~gvtR~D~~~~n~~a~~Aie~~G~lp~dIL~ 201 (216)
T TIGR03761 167 RYRHSGVTRDDFAANNARARKAIERFGELPQDILE 201 (216)
T ss_pred hhhcCCCCHHHHHhCCHHHHHHHHHcCCCCHHHHc
Confidence 113346788888766666555655555444 3443
No 206
>PRK15331 chaperone protein SicA; Provisional
Probab=26.79 E-value=3.3e+02 Score=26.54 Aligned_cols=72 Identities=17% Similarity=0.075 Sum_probs=56.7
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlA 494 (555)
+.|.=..++|+.|+..-.-.-.+-...|+. .+-.|.+...+|+.+.|..-|..|+..++...++.-++..+-
T Consensus 78 aa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p--------~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~ 149 (165)
T PRK15331 78 AAVCQLKKQFQKACDLYAVAFTLLKNDYRP--------VFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLE 149 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCc--------cchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 666667789999998766665555555553 567899999999999999999999998888888877776643
No 207
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=26.52 E-value=3.2e+02 Score=26.41 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008745 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK 478 (555)
Q Consensus 408 ~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k 478 (555)
+.++-|.+..-+-+.++..|.+.+..+.++. .|...-...-...|+.|+|..-.|+-+++...-..+++
T Consensus 128 ~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~--~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~ 196 (220)
T TIGR01716 128 IQLLLNIAVLLIEKNEFSYAQYFLEKLEKIL--DPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIE 196 (220)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--chhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 3444556666677889999999999988877 44433346888899999999999987666555555544
No 208
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=26.08 E-value=5.7e+02 Score=24.19 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008745 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (555)
Q Consensus 343 ~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~ 422 (555)
-++|+-.-+-...-.|.|++|-.-.+++|+- +..-|...+ +-..+|.+-||. +-.-|| ..|
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y----FNRRGEL~q------deGklWIaaVfs--ra~Al~-------~~G 114 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRY----FNRRGELHQ------DEGKLWIAAVFS--RAVALE-------GLG 114 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----HHHH--TTS------THHHHHHHHHHH--HHHHHH-------HTT
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHH----Hhhcccccc------ccchhHHHHHHH--HHHHHH-------hcC
Confidence 4677766666666679999999888899998 666665532 125799888886 555554 568
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 008745 423 GFVEAQEALVQMKNWFIRF 441 (555)
Q Consensus 423 ~~~~A~~~l~q~~~~~~~~ 441 (555)
+.++|.+.+.-..+|...-
T Consensus 115 r~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 115 RKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp -HHHHHHHHHHHHHHHHH-
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 8999999988888886543
No 209
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.97 E-value=2e+02 Score=32.20 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=44.4
Q ss_pred HHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHhhhhhhhh
Q 008745 157 YVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNA 236 (555)
Q Consensus 157 ~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a 236 (555)
-++|.+.+.|++.++-.+|+.|=.++.-+. ..+.++..+++. -|+|.- -.+||..|+.-
T Consensus 341 R~LA~~ghyPaIdvl~SiSRvm~~i~~~~h----~~~a~~~r~lls--------------~y~e~e---dLi~iGaY~~G 399 (441)
T COG1157 341 RALAEAGHYPAIDVLASISRVMPQIVSEEH----RKAARRLRQLLS--------------RYEENE---DLIRIGAYQKG 399 (441)
T ss_pred HhHHhcCCCCCcchHHHHHHHhhhcCCHHH----HHHHHHHHHHHH--------------HHHHHH---HHHHhcCccCC
Confidence 477999999999999999999988864221 112233333322 122211 16789999986
Q ss_pred hhhhhhhHHHHH
Q 008745 237 AHHVDNLDAAMK 248 (555)
Q Consensus 237 ~~~v~~ld~~~~ 248 (555)
+. ..+|.|++
T Consensus 400 ~D--~~~D~Ai~ 409 (441)
T COG1157 400 SD--PELDKAIK 409 (441)
T ss_pred CC--HHHHHHHH
Confidence 65 23788885
No 210
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=25.83 E-value=6.2e+02 Score=28.04 Aligned_cols=133 Identities=18% Similarity=0.081 Sum_probs=80.6
Q ss_pred HHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhh
Q 008745 8 LWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCR 87 (555)
Q Consensus 8 Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~ 87 (555)
..++|+++..-|.-..|.+-++-.++-.. -|+. +..++++=+. |-..=...+|+. ++..|.-. .
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~--D~~L----~~~~~~l~~~---d~~~l~k~~e~~---l~~h~~~p----~ 329 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQW--DPRL----CRLIPRLRPG---DPEPLIKAAEKW---LKQHPEDP----L 329 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcc--ChhH----HHHHhhcCCC---CchHHHHHHHHH---HHhCCCCh----h
Confidence 35678888888877888888877777655 5552 2233333221 111111222333 34444333 5
Q ss_pred HHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChh
Q 008745 88 TFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPD 167 (555)
Q Consensus 88 a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~ 167 (555)
..+-|.++|.+.+.+..++..|+.++..--. .++ ..| +|.++...||...|-+.=+.|...+.+.+.|.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~---~~~-------la~~~~~~g~~~~A~~~r~e~L~~~~~~~~~s 398 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASD---YAE-------LADALDQLGEPEEAEQVRREALLLTRQPNLPS 398 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhh---HHH-------HHHHHHHcCChHHHHHHHHHHHHHhcCCCCcc
Confidence 5777888888888887777777777764332 111 122 77777788888888877777777776666553
No 211
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=25.71 E-value=95 Score=34.18 Aligned_cols=131 Identities=16% Similarity=0.170 Sum_probs=71.4
Q ss_pred CccccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHH
Q 008745 332 MDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFL 411 (555)
Q Consensus 332 l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lL 411 (555)
.++.||+..+-+.+.-+ .+. ..++++++=+.|.+.+... +.|. .+++..+..| +.| .+.-+
T Consensus 108 ~~l~~la~~~~~~~~~~----~s~-------~~~~le~~s~~i~~~f~~c-l~d~--~~~~~~~kk~--~~~---~i~n~ 168 (394)
T KOG2688|consen 108 KDLRYLAINADCALLSF----SSL-------PNQLLEAASRTISRLFSSC-LSDR--RADLEESKKV--AML---YIVNQ 168 (394)
T ss_pred HHHHHHhhhhHHhhcCc----ccC-------chHHHHHHHHHHHHHHHHH-hCcc--ccccccchhh--HHH---HHHHH
Confidence 44788888877766444 222 2334555555554444432 1222 3333345566 454 23333
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHH---HHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHH
Q 008745 412 ENKVAVELTRSGFVEAQEALVQMKN---WFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 486 (555)
Q Consensus 412 E~~v~~~lt~~~~~~A~~~l~q~~~---~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~ 486 (555)
.+.+.-++-. +.....-++.+++ +..++|. .--..-+|-+|.|++-..++.+|..|+.+|.+......+.
T Consensus 169 lf~Iyfri~~--~~L~k~l~ra~~~~~~~~~~~~l---~~~v~y~YylGr~a~~~~d~~~A~~~L~~af~~cp~~~~~ 241 (394)
T KOG2688|consen 169 LFQIYFRIEK--LLLCKNLIRAFDQSGSDISDFPL---AQLVVYHYYLGRYAMFESDFLNAFLQLNEAFRLCPDLLLK 241 (394)
T ss_pred HHHHHHHHhh--HHHhHHHHHHhhccccchhhccc---ccceeeeeeeeeehhhhhhHHHHHHHHHHHHHhCcHHHHh
Confidence 3344444322 2222222222222 1222221 1234568999999999999999999999999988777655
No 212
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=25.36 E-value=1.2e+02 Score=20.77 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=16.2
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhc
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQ 33 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~ 33 (555)
+.++-.||..+...|++..|+.+++.++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 44555556666666666666666665554
No 213
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.28 E-value=2.2e+02 Score=32.54 Aligned_cols=92 Identities=15% Similarity=0.251 Sum_probs=62.8
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 008745 353 LGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALV 432 (555)
Q Consensus 353 ~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~ 432 (555)
-++..|+|+.|-.++.+++. ++|. | ++ +.=|-..+..-.++|..|.+.-.
T Consensus 11 aa~s~~d~~~ai~~~t~ai~----------l~p~----n---------------hv-lySnrsaa~a~~~~~~~al~da~ 60 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIM----------LSPT----N---------------HV-LYSNRSAAYASLGSYEKALKDAT 60 (539)
T ss_pred hhcccccHHHHHHHHHHHHc----------cCCC----c---------------cc-hhcchHHHHHHHhhHHHHHHHHH
Confidence 35667889888877755554 3443 1 11 12455667777889999988877
Q ss_pred HHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 433 QMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 433 q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
+.++++ |+...+.. =.|.=.++.|+|++|...|.+.++.-.|
T Consensus 61 k~~~l~---p~w~kgy~-----r~Gaa~~~lg~~~eA~~ay~~GL~~d~~ 102 (539)
T KOG0548|consen 61 KTRRLN---PDWAKGYS-----RKGAALFGLGDYEEAILAYSEGLEKDPS 102 (539)
T ss_pred HHHhcC---CchhhHHH-----HhHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence 776654 44433332 2588899999999999999998875443
No 214
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.75 E-value=1e+03 Score=26.78 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=82.4
Q ss_pred HHHHhhccHHHHHHHHHHhhc----cCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhH
Q 008745 13 DYHENKGEIGKAVKCLEAICQ----SHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRT 88 (555)
Q Consensus 13 e~fr~~~~i~~ai~CLeAvl~----~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a 88 (555)
-.++.+.+.+.|.+|-++.+. .+++-...+-|++=.=+.... |-+.-...=+.-|. +.+-.+.+...++=+---
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~-E~~~~l~~~rs~l~-~~lrtAtLrhd~e~qavL 211 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSY-ELEGRLADIRSFLH-ALLRTATLRHDEEGQAVL 211 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH-HhhcchHHHHHHHH-HHHHHhhhcCcchhHHHH
Confidence 355666788999999888774 222234455555433332222 22222112222221 112223344444444455
Q ss_pred HHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhh
Q 008745 89 FSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (555)
Q Consensus 89 ~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~ 162 (555)
..+|-|+|...+....+-+.+.|.. -++.-++..| +||+|=+.-|-+++.||.+|.+.+-.....|-+
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~-----~pe~~snne~-ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSV-----YPEAASNNEW-ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhccc-----CccccccHHH-HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 6677888888776654444333321 1333344455 799999999999999999999999887777765
No 215
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=24.22 E-value=2.3e+02 Score=31.70 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc----CChhHHHH
Q 008745 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT----ESKSMQAM 488 (555)
Q Consensus 413 ~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t----~s~~~~~~ 488 (555)
+++-|-...+++++|++.-.....+=..+-.-+ |++|...-++++.+-|..||+.|+++- +++.+.-+
T Consensus 174 lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al--------~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 174 LKAECLAFLGDYDEAQSEAIDILKLDATNAEAL--------YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM 245 (486)
T ss_pred hhhhhhhhcccchhHHHHHHHHHhcccchhHHH--------HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Q ss_pred HHHHHHHHHhhcCC----cccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhh
Q 008745 489 CHAYAAVSYFCIGD----AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEA 549 (555)
Q Consensus 489 ~~lnlAi~yL~~g~----~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eA 549 (555)
+.....--. + |+ .+.+..+-+.-.-.+....+++-- -+-.|.=.+++..+-||+.||
T Consensus 246 ~k~le~~k~-~-gN~~fk~G~y~~A~E~Yteal~idP~n~~~--naklY~nra~v~~rLgrl~ea 306 (486)
T KOG0550|consen 246 PKKLEVKKE-R-GNDAFKNGNYRKAYECYTEALNIDPSNKKT--NAKLYGNRALVNIRLGRLREA 306 (486)
T ss_pred HHHHHHHHh-h-hhhHhhccchhHHHHHHHHhhcCCccccch--hHHHHHHhHhhhcccCCchhh
No 216
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=23.63 E-value=1.6e+02 Score=21.70 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 008745 452 IEMLRGQYAHSVGCYSEAAFHYVEAAKI 479 (555)
Q Consensus 452 i~~l~G~ya~s~g~~~~A~~~F~~A~k~ 479 (555)
++.++|=+..-.++|+.|..-|..|+++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5788999999999999999999998764
No 217
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.12 E-value=7e+02 Score=26.71 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=18.4
Q ss_pred CccccccchhHHH-HHHHHHHHhhCCCCChH
Q 008745 332 MDGEWLPKSAVYA-LVDLMVVILGRPKGLFK 361 (555)
Q Consensus 332 l~f~WLPk~~l~a-Lvyllsvi~~~~kg~~~ 361 (555)
+...|=|...-|. |.-.+.-.....+|.|+
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~ 77 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFK 77 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceE
Confidence 4466777766663 55556666666666663
No 218
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=22.99 E-value=1.2e+03 Score=26.73 Aligned_cols=123 Identities=16% Similarity=0.142 Sum_probs=85.9
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHH-HHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA-MCHAYA 493 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~-~~~lnl 493 (555)
+..---.|+++.|.+-|... .+..|++ +-++++.|-+.--.|++++|......|-.+ +..| +.|--.
T Consensus 201 Aqhyd~~g~~~~Al~~Id~a---I~htPt~-----~ely~~KarilKh~G~~~~Aa~~~~~Ar~L----D~~DRyiNsK~ 268 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKA---IEHTPTL-----VELYMTKARILKHAGDLKEAAEAMDEAREL----DLADRYINSKC 268 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHH---HhcCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhC----ChhhHHHHHHH
Confidence 33344578999988887755 4556886 357899999999999999999988877654 2333 333334
Q ss_pred HHHHhhcCCcccHHHHHHhhCcccccc-ccccchhHHHHHHHH--HHHHHHhhcChhhhhhh
Q 008745 494 AVSYFCIGDAESSSQAIDLIGPVYQMK-DTINGVREEASLHFA--YGLLLMRQQDFQEARLA 552 (555)
Q Consensus 494 Ai~yL~~g~~~s~~~aL~li~P~~~~~-~~~~~~~~ka~~~fv--~gl~~~~q~~~~eAr~~ 552 (555)
|=-+||.| .+..|.+.++.|.+.. +....+.|.-+..|. .|-..+++|++..|..+
T Consensus 269 aKy~LRa~---~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 269 AKYLLRAG---RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHCC---CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 55566643 3667777777775544 345677777776665 57888999999988653
No 219
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.74 E-value=1.1e+03 Score=26.50 Aligned_cols=196 Identities=15% Similarity=0.079 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCccc-ccccchhhHHH-HHHHHHHHHHHHHHHHHHHH
Q 008745 341 AVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGV-REVDLQHSAIW-MAGVYLMLLMQFLENKVAVE 418 (555)
Q Consensus 341 ~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v-~e~~l~~~~~w-~~~~yl~L~~~lLE~~v~~~ 418 (555)
-..+|+.++++..+.-.--+++..++.-.+.+. .+++-+++. .++.....++. ...+|+.|.+++. -
T Consensus 68 n~~vL~~~v~~~~~~~se~~~~~l~fv~~~~~~-----~~p~~~~s~~t~~a~~~k~~~~Ei~aY~~lLv~Lf------l 136 (493)
T KOG2581|consen 68 NGAVLYKLVSSLLSSGSEAMDRLLRFVPAFDKN-----IKPLDTDSPNTQSALKRKPLPAEIEAYLYLLVLLF------L 136 (493)
T ss_pred hHHHHHHHHHHHcCCchHHHHHHHhhccccccc-----CCcccccccccccccccCCchHHHHHHHHHHHHHH------H
Confidence 457788888877654433334555555444443 222222210 11111001111 2466765433321 1
Q ss_pred HhhcCHHHHHHHHHH-HHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC---ChhHHHHHHHHHH
Q 008745 419 LTRSGFVEAQEALVQ-MKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAA 494 (555)
Q Consensus 419 lt~~~~~~A~~~l~q-~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~---s~~~~~~~~lnlA 494 (555)
.-..++.+|.+.-.. |...+-..-+.++.+..-+.+-.-+..--.|.+..=-..|..-++.++ +.+.+++..=.+-
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 224556666654433 444565667888888888888777777778887766666665555443 2234443322233
Q ss_pred HHHhhcCCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 495 VSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 495 i~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
--||.- .-+.++-++|.-.-.....+.+ |.|=++|-.|---+-|.+|.+|+.+
T Consensus 217 r~yL~n---~lydqa~~lvsK~~~pe~~snn--e~ARY~yY~GrIkaiqldYssA~~~ 269 (493)
T KOG2581|consen 217 RNYLHN---KLYDQADKLVSKSVYPEAASNN--EWARYLYYLGRIKAIQLDYSSALEY 269 (493)
T ss_pred HHHhhh---HHHHHHHHHhhcccCccccccH--HHHHHHHHHhhHHHhhcchhHHHHH
Confidence 334431 1144444444432111111222 6999999999999999999999864
No 220
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.67 E-value=4e+02 Score=29.01 Aligned_cols=92 Identities=22% Similarity=0.198 Sum_probs=55.5
Q ss_pred hhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHH-hhhCC--hhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHh
Q 008745 127 LWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA-TEISY--PDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWES 203 (555)
Q Consensus 127 ~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A-~~~~~--~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~ 203 (555)
---+-.+++||+++-.+++|..|.+.|..+=.-- .+.+| ..+.....++++.+-. ++..+.+.-++|++=+..
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~---~d~veae~~inRaSil~a- 175 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLED---DDKVEAEAYINRASILQA- 175 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHhhh-
Confidence 4556778999999999999999999987521111 11111 3344455555555433 445666666688775543
Q ss_pred cCccccccccchhhhhHHHHHHH---HHhhhhhh
Q 008745 204 IDPNRRGQCLGLLFYNELLHIFY---RLRICDYK 234 (555)
Q Consensus 204 i~~~~r~~~~g~~~~~e~l~vfy---~lrvc~y~ 234 (555)
++ .||-|.+-| --||-||+
T Consensus 176 ------~~------~Ne~Lqie~kvc~ARvlD~k 197 (399)
T KOG1497|consen 176 ------ES------SNEQLQIEYKVCYARVLDYK 197 (399)
T ss_pred ------cc------cCHHHHHHHHHHHHHHHHHH
Confidence 01 267777766 23555544
No 221
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=22.59 E-value=1.5e+03 Score=27.99 Aligned_cols=340 Identities=16% Similarity=0.218 Sum_probs=158.5
Q ss_pred hHHHHHHHHHHHcCCC-chHhH-----HHHHHHHHhhhhhcccccchhHHHHhH---HHHHHhhh--c--CChHHHHHHH
Q 008745 87 RTFSLLSQCYHLVGAI-PPQKL-----ILYKALDLTSSASQDVAVKLWSCNFNS---QLANAFII--E--GDYQSSISAL 153 (555)
Q Consensus 87 ~a~sLLa~~y~~~~~~-~~~k~-----~L~k~i~~s~~~~e~~~~~~W~~~f~f---qlA~~~~~--~--~D~~~A~~~L 153 (555)
.|-+.|||.|...|.. .++|. ++..||.+... .|..-.+|.-.++. .++.+-.. + +.++-|+..-
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKE--nd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLY 1045 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKE--NDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLY 1045 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHH
Confidence 3567899999998866 44443 44455555542 23334466554442 11111111 1 1333333332
Q ss_pred hhHHHHHhhhCC--hhHHHHHHHHHHHH-HhcccC-chhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHH-HH
Q 008745 154 QSGYVCATEISY--PDLQMFFATAILHV-HLMQWD-DENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFY-RL 228 (555)
Q Consensus 154 ~~g~~~A~~~~~--~~~~v~fals~~~~-~L~~~~-~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy-~l 228 (555)
+ +.|. +++++-|+.-+.-+ .|+-.+ ++++=-..++||...+..+.|=.|...- --.-+-|- -|
T Consensus 1046 H-------kAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~l-----L~~ar~~~~Al 1113 (1416)
T KOG3617|consen 1046 H-------KAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNL-----LCLAREFSGAL 1113 (1416)
T ss_pred H-------hhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHH
Confidence 2 2222 55666665544322 233211 1122234679999999854443332110 00111233 67
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHhhhhHHHHh-hhcCCCCCChh--HHHHHHHHHHHHHHHHHhcccCCCCC
Q 008745 229 RICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALN-QSLSRPDLPSR--ERSALAGRQAKLQQRLRSLEDSSLTG 305 (555)
Q Consensus 229 rvc~y~~a~~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~-~~L~~~~~~~~--~~~~~~~k~kqLQ~~lq~i~~~~~~~ 305 (555)
++|.=++.-- -+.+.+.|.-..++++..++=..-|..+. .|+.+++.|.. .-.|---|++-+...+++
T Consensus 1114 qlC~~~nv~v-tee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKS-------- 1184 (1416)
T KOG3617|consen 1114 QLCKNRNVRV-TEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKS-------- 1184 (1416)
T ss_pred HHHhcCCCch-hHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhc--------
Confidence 7887665322 11122222211233444333333344443 46777777665 445566677777777776
Q ss_pred cCcC-CcccccCcccccCcccccCCCCCc-cccccchhHHHHHHHHHHHhhCC-------------------CCChHHHH
Q 008745 306 KEFL-EPSYFGNARQAWGDKLVLAPSPMD-GEWLPKSAVYALVDLMVVILGRP-------------------KGLFKECM 364 (555)
Q Consensus 306 ~~~~-~~~~~~~~~~~~~d~~~~~~~~l~-f~WLPk~~l~aLvyllsvi~~~~-------------------kg~~~kA~ 364 (555)
|.- ....|.|..| ....-+.+-|.+. ..|-..+++- =..++--+-.+ --.++||+
T Consensus 1185 -Gdt~KI~FFAn~sR-qkEiYImAANyLQtlDWq~~pq~m--K~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~ 1260 (1416)
T KOG3617|consen 1185 -GDTQKIRFFANTSR-QKEIYIMAANYLQTLDWQDNPQTM--KDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAM 1260 (1416)
T ss_pred -CCcceEEEEeeccc-cceeeeehhhhhhhcccccChHHH--hhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHh
Confidence 111 2445666555 3334455666666 7787666542 22222222111 12234444
Q ss_pred HHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc--c
Q 008745 365 QRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRF--P 442 (555)
Q Consensus 365 Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~--P 442 (555)
.-+++|-+- |.|+.-.. ..+ ..|..|+--+---+++++.-+.-.+.+...|+|++.+.+.. |
T Consensus 1261 gAl~eA~kC----l~ka~~k~-~~~-----------t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld 1324 (1416)
T KOG3617|consen 1261 GALEEAAKC----LLKAEQKN-MST-----------TGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILD 1324 (1416)
T ss_pred HHHHHHHHH----HHHHHhhc-chH-----------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCC
Confidence 444444433 23322110 001 22233333333334555665655668888999999887764 4
Q ss_pred chhhhhhhHHHHHHHHHHHHhCCHHHHHH
Q 008745 443 TILQACESMIEMLRGQYAHSVGCYSEAAF 471 (555)
Q Consensus 443 ~ll~~~~~~i~~l~G~ya~s~g~~~~A~~ 471 (555)
.+. .|..+.-++.-.| .+.-++..|-.
T Consensus 1325 ~~I-r~~~~~a~lie~~-v~~k~y~~AyR 1351 (1416)
T KOG3617|consen 1325 DII-RCTRLFALLIEDH-VSRKNYKPAYR 1351 (1416)
T ss_pred Ccc-hhHHHHHHHHHHH-HhhhhccHHHH
Confidence 332 2333333333333 24455555543
No 222
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=22.52 E-value=8.3e+02 Score=24.85 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=49.5
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhH-HHHHHHHhhHHHHhhcCChHHHHHHHHHHH
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPII-EVKTRLRISTLLLKHTHNVNHAKSHLERSQ 72 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~-EA~~rLrla~lL~e~T~N~~~AkthLEka~ 72 (555)
.++...+.+|...|..|.+-.|...+.-+.+... .+.. -..+.+..|++|+... +-++|-.-|+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~--~~~~~~~~v~~e~akllw~~g-~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNP--SSESLLPRVFLEYAKLLWAQG-EQEEAIQKLRELL 211 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC--cccCCCcchHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 6778899999999999999999999999987653 1111 3456777888888775 4466666665543
No 223
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.31 E-value=4.8e+02 Score=29.76 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=63.3
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhh
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~ 86 (555)
.+..|+|=.++-+++-.||||+.-++... .+|--+=+|||.+.=+.+| .++|...+||-...+..-+.-+|--.
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~-----dte~~~l~~LakLye~l~d-~~eAa~~yek~v~~~~~eg~~~~~t~ 507 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLG-----DTEGSALVRLAKLYEELKD-LNEAAQYYEKYVEVSELEGEIDDETI 507 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcc-----ccchHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhhcccchHHH
Confidence 35578888888899999999999888654 4588888999997655555 57888889998775433333334334
Q ss_pred hHHHHHHHHHHHcCCC
Q 008745 87 RTFSLLSQCYHLVGAI 102 (555)
Q Consensus 87 ~a~sLLa~~y~~~~~~ 102 (555)
.+--.||+-+.+.+..
T Consensus 508 ka~~fLA~~f~k~~~~ 523 (559)
T KOG1155|consen 508 KARLFLAEYFKKMKDF 523 (559)
T ss_pred HHHHHHHHHHHhhcch
Confidence 4444577777666544
No 224
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.04 E-value=7.7e+02 Score=24.82 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchH
Q 008745 66 SHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQ 105 (555)
Q Consensus 66 thLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~ 105 (555)
.-|++|....+.. +...+.-.....+|+-|++.|....+
T Consensus 159 ~lL~~A~~~f~~~-~~~R~~~~l~~~~A~ey~~~g~~~~A 197 (247)
T PF11817_consen 159 ELLEKAYEQFKKY-GQNRMASYLSLEMAEEYFRLGDYDKA 197 (247)
T ss_pred HHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHCCCHHHH
Confidence 3455554444432 12344444445556666666655433
No 225
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.02 E-value=5.9e+02 Score=26.62 Aligned_cols=94 Identities=15% Similarity=0.239 Sum_probs=62.4
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh--HHHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--MQAMCHAY 492 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~--~~~~~~ln 492 (555)
++-.+-.++|..|.+.. ++-...||.- ...+..+|.+|.-.-+.|+++.|...|..+.+--..-+ --++-.|
T Consensus 148 A~~~~ksgdy~~A~~~F---~~fi~~YP~s--~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl- 221 (262)
T COG1729 148 ALDLYKSGDYAEAEQAF---QAFIKKYPNS--TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL- 221 (262)
T ss_pred HHHHHHcCCHHHHHHHH---HHHHHcCCCC--cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH-
Confidence 34456688999998874 3445667864 37899999999999999999999999998877432211 1233333
Q ss_pred HHHHHhhcCCcccHHHHHHhhCc
Q 008745 493 AAVSYFCIGDAESSSQAIDLIGP 515 (555)
Q Consensus 493 lAi~yL~~g~~~s~~~aL~li~P 515 (555)
+++.-+.|+.+..-..|+.|.-
T Consensus 222 -g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 -GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred -HHHHHHhcCHHHHHHHHHHHHH
Confidence 3343344555554455554444
No 226
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=21.92 E-value=8.5e+02 Score=24.76 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=26.6
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhc
Q 008745 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKL 381 (555)
Q Consensus 348 llsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl 381 (555)
+..++.+...|.++++.++++++...+.+.+..+
T Consensus 33 ~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~ 66 (352)
T PF02259_consen 33 FYRALLALRQGDYDEAKKYIEKARQLLLDELSAL 66 (352)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455588999999999999999988777663
No 227
>PLN03077 Protein ECB2; Provisional
Probab=21.91 E-value=1.4e+03 Score=27.20 Aligned_cols=85 Identities=9% Similarity=-0.029 Sum_probs=48.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlA 494 (555)
|-+-+-.|++++|.+.+.+|. -.|. ......|++.|. --|+.+.|+......+++-.+...-- +.++
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~----~~pd-----~~~~~aLl~ac~-~~~~~e~~e~~a~~l~~l~p~~~~~y---~ll~ 698 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMP----ITPD-----PAVWGALLNACR-IHRHVELGELAAQHIFELDPNSVGYY---ILLC 698 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCC----CCCC-----HHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCcchH---HHHH
Confidence 444566788999998887772 1233 234445556543 36788888877777766644432211 1122
Q ss_pred HHHhhcCCcccHHHHHHh
Q 008745 495 VSYFCIGDAESSSQAIDL 512 (555)
Q Consensus 495 i~yL~~g~~~s~~~aL~l 512 (555)
-+|-..|+-+...++.+.
T Consensus 699 n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 699 NLYADAGKWDEVARVRKT 716 (857)
T ss_pred HHHHHCCChHHHHHHHHH
Confidence 245555665554444433
No 228
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=21.01 E-value=3.1e+02 Score=30.86 Aligned_cols=162 Identities=16% Similarity=0.180 Sum_probs=102.9
Q ss_pred HHHHhhccHHHHHHHHHHhhccCCCCC-hhHHHHHHHHhhHHHHhhcC-----C-------hHHHHHHHHHHHHHH----
Q 008745 13 DYHENKGEIGKAVKCLEAICQSHVSFL-PIIEVKTRLRISTLLLKHTH-----N-------VNHAKSHLERSQLLL---- 75 (555)
Q Consensus 13 e~fr~~~~i~~ai~CLeAvl~~~~~l~-P~~EA~~rLrla~lL~e~T~-----N-------~~~AkthLEka~~l~---- 75 (555)
..|.-.|.+-.|+-|-+--+.+-.-|- -..|+|+=.-||++..+..+ | -++++..||.|..-.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 344445566667777776666543233 35689999999999887543 2 367888898887321
Q ss_pred ---hcC--------------C------cch------hhhh-------------hHHHHHHHHHHHcCCCchHhH----HH
Q 008745 76 ---KAI--------------P------SCF------ELKC-------------RTFSLLSQCYHLVGAIPPQKL----IL 109 (555)
Q Consensus 76 ---k~i--------------~------~~~------dlK~-------------~a~sLLa~~y~~~~~~~~~k~----~L 109 (555)
... + .|. ++|. +|+|=|+.||.-.|..+.+-+ +|
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 110 1 221 2222 466778888888887755443 33
Q ss_pred HHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCC--hhHHHHHHHHHHHHHhc
Q 008745 110 YKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISY--PDLQMFFATAILHVHLM 182 (555)
Q Consensus 110 ~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~--~~~~v~fals~~~~~L~ 182 (555)
.-+|++-.+.+|+ .--+.|++.+..-+||..||..-+.-.++|++.+| -+.+....|..++-.|.
T Consensus 263 ~LAielg~r~vEA--------QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 263 NLAIELGNRTVEA--------QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred HHHHHhcchhHHH--------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 3344433333333 11234778888888999999999999999999888 56777777777766554
No 229
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=20.74 E-value=4e+02 Score=26.84 Aligned_cols=74 Identities=20% Similarity=0.179 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhc--cchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHhhcC
Q 008745 426 EAQEALVQMKNWFIRF--PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK--ITESKSMQAMCHAYAAVSYFCIG 501 (555)
Q Consensus 426 ~A~~~l~q~~~~~~~~--P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k--~t~s~~~~~~~~lnlAi~yL~~g 501 (555)
.+.++|.++.+--..+ |.++ -|-++-..-++|...|..+-+ .-++++| +..+|.-|+. .
T Consensus 92 ~s~~~l~~L~~~tk~S~dP~ll------------Yy~Wsr~~d~~A~~~fL~~E~~~~l~t~el----q~aLAtyY~k-r 154 (203)
T PF11207_consen 92 HSYQELERLQEETKNSQDPYLL------------YYHWSRFGDQEALRRFLQLEGTPELETAEL----QYALATYYTK-R 154 (203)
T ss_pred HHHHHHHHHHHHHccCCCccHH------------HHHhhccCcHHHHHHHHHHcCCCCCCCHHH----HHHHHHHHHc-c
Confidence 3455677776665555 6663 466666578899999986532 2233333 3446777876 6
Q ss_pred Ccc-c---HHHHHHhhCcc
Q 008745 502 DAE-S---SSQAIDLIGPV 516 (555)
Q Consensus 502 ~~~-s---~~~aL~li~P~ 516 (555)
|++ . +.++|++.+|-
T Consensus 155 D~~Kt~~ll~~~L~l~~~~ 173 (203)
T PF11207_consen 155 DPEKTIQLLLRALELSNPD 173 (203)
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 764 2 78999998885
No 230
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.56 E-value=1e+03 Score=25.21 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=62.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 008745 358 GLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNW 437 (555)
Q Consensus 358 g~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~ 437 (555)
|.+++|...|.+|+--++...- +..|+ .+.|.- .-....-||-|..-|.|..+++=++.+.-+ ++
T Consensus 192 ~~ykEA~~~YreAi~~l~~L~l--kEkP~--------e~eW~e--Ldk~~tpLllNy~QC~L~~~e~yevleh~s---ei 256 (329)
T KOG0545|consen 192 GRYKEASSKYREAIICLRNLQL--KEKPG--------EPEWLE--LDKMITPLLLNYCQCLLKKEEYYEVLEHCS---EI 256 (329)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh--ccCCC--------ChHHHH--HHHhhhHHHHhHHHHHhhHHHHHHHHHHHH---HH
Confidence 5568898888899887444221 12233 566631 111234456688899999999998877644 44
Q ss_pred HHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 008745 438 FIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 479 (555)
Q Consensus 438 ~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~ 479 (555)
....|+... ..+-+|----++=+.++|.+-|+-++.+
T Consensus 257 L~~~~~nvK-----A~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 257 LRHHPGNVK-----AYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HhcCCchHH-----HHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 566676432 1223333334566788888888865543
Done!