Query 008745
Match_columns 555
No_of_seqs 90 out of 92
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 10:44:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sf4_A G-protein-signaling mod 99.5 4.4E-10 1.5E-14 111.9 37.4 336 2-504 6-364 (406)
2 4a1s_A PINS, partner of inscut 99.4 4E-09 1.4E-13 106.4 36.6 318 3-487 46-380 (411)
3 3ro2_A PINS homolog, G-protein 99.4 3.9E-09 1.3E-13 100.9 34.0 311 5-482 5-335 (338)
4 3sf4_A G-protein-signaling mod 99.2 6.9E-08 2.4E-12 96.0 34.9 351 43-548 8-365 (406)
5 4a1s_A PINS, partner of inscut 99.1 2.7E-07 9.1E-12 93.0 34.1 320 41-513 45-373 (411)
6 3ro2_A PINS homolog, G-protein 99.1 5.4E-07 1.9E-11 86.0 34.1 308 48-505 9-321 (338)
7 1w3b_A UDP-N-acetylglucosamine 99.0 1.5E-06 5E-11 87.5 35.5 148 7-181 1-148 (388)
8 3ieg_A DNAJ homolog subfamily 98.9 1.2E-05 4E-10 78.0 36.4 326 5-482 3-338 (359)
9 2gw1_A Mitochondrial precursor 98.9 2E-06 6.8E-11 88.5 31.9 100 3-116 4-103 (514)
10 3ulq_A Response regulator aspa 98.9 5.7E-06 1.9E-10 83.7 33.3 175 344-552 184-361 (383)
11 3ieg_A DNAJ homolog subfamily 98.8 1.5E-05 5.1E-10 77.2 31.8 318 43-552 2-328 (359)
12 1hz4_A MALT regulatory protein 98.8 1.5E-05 5.1E-10 79.8 32.5 158 5-166 14-171 (373)
13 3q15_A PSP28, response regulat 98.7 4.3E-05 1.5E-09 77.3 33.8 174 344-552 182-358 (378)
14 2y4t_A DNAJ homolog subfamily 98.7 7.2E-05 2.5E-09 75.9 35.2 161 4-183 25-192 (450)
15 1w3b_A UDP-N-acetylglucosamine 98.7 0.00019 6.6E-09 71.9 37.7 333 6-515 34-370 (388)
16 2xpi_A Anaphase-promoting comp 98.7 7.5E-05 2.6E-09 78.9 35.4 109 355-504 384-492 (597)
17 2y4t_A DNAJ homolog subfamily 98.6 6.6E-05 2.3E-09 76.2 31.8 333 20-552 7-351 (450)
18 2gw1_A Mitochondrial precursor 98.6 4.1E-05 1.4E-09 78.6 30.0 132 348-515 342-480 (514)
19 1hz4_A MALT regulatory protein 98.6 6.8E-05 2.3E-09 75.0 30.4 300 83-552 11-315 (373)
20 3fp2_A TPR repeat-containing p 98.6 0.00013 4.4E-09 75.7 33.1 158 347-552 279-450 (537)
21 3ro3_A PINS homolog, G-protein 98.5 3.3E-06 1.1E-10 71.9 15.8 157 3-165 7-164 (164)
22 3hym_B Cell division cycle pro 98.5 0.00011 3.9E-09 70.5 28.5 131 7-160 24-155 (330)
23 3gw4_A Uncharacterized protein 98.5 9.3E-06 3.2E-10 73.2 19.4 161 4-169 25-186 (203)
24 3fp2_A TPR repeat-containing p 98.5 0.00023 8E-09 73.7 31.5 129 351-515 351-493 (537)
25 2xpi_A Anaphase-promoting comp 98.4 0.00011 3.8E-09 77.6 28.4 32 5-36 200-231 (597)
26 4g1t_A Interferon-induced prot 98.4 0.00054 1.9E-08 70.2 32.7 377 83-551 48-451 (472)
27 3u4t_A TPR repeat-containing p 98.4 8.6E-05 2.9E-09 69.9 24.5 59 424-482 195-253 (272)
28 3ulq_A Response regulator aspa 98.4 4.9E-05 1.7E-09 76.8 24.0 186 9-202 107-295 (383)
29 3q15_A PSP28, response regulat 98.4 6.2E-05 2.1E-09 76.2 22.9 187 7-201 103-291 (378)
30 3ro3_A PINS homolog, G-protein 98.4 3.7E-05 1.3E-09 65.2 18.1 157 39-202 4-160 (164)
31 4eqf_A PEX5-related protein; a 98.3 0.00028 9.7E-09 69.9 26.3 142 6-160 66-207 (365)
32 3gw4_A Uncharacterized protein 98.3 0.00013 4.6E-09 65.5 21.2 175 17-202 4-178 (203)
33 3cv0_A Peroxisome targeting si 98.3 0.00031 1.1E-08 67.2 24.9 136 6-159 22-167 (327)
34 4eqf_A PEX5-related protein; a 98.2 0.00018 6.2E-09 71.3 22.7 120 23-161 45-164 (365)
35 3nf1_A KLC 1, kinesin light ch 98.2 0.00011 3.8E-09 69.9 20.3 156 4-162 68-227 (311)
36 3nf1_A KLC 1, kinesin light ch 98.2 0.00018 6.2E-09 68.4 21.6 192 3-200 25-224 (311)
37 3edt_B KLC 2, kinesin light ch 98.2 9.5E-05 3.2E-09 69.0 18.7 156 4-162 42-201 (283)
38 3hym_B Cell division cycle pro 98.2 0.0011 3.6E-08 63.6 26.3 120 353-505 168-288 (330)
39 1fch_A Peroxisomal targeting s 98.2 0.00086 2.9E-08 65.8 25.4 305 55-505 35-348 (368)
40 3edt_B KLC 2, kinesin light ch 98.1 0.00017 5.9E-09 67.2 18.8 187 344-552 43-274 (283)
41 3u3w_A Transcriptional activat 98.0 0.0003 1E-08 68.8 18.7 156 7-167 117-274 (293)
42 1qqe_A Vesicular transport pro 98.0 0.00048 1.6E-08 67.7 20.2 174 347-552 40-221 (292)
43 3qky_A Outer membrane assembly 98.0 0.0007 2.4E-08 64.4 20.6 184 4-202 14-223 (261)
44 2ifu_A Gamma-SNAP; membrane fu 98.0 0.00042 1.4E-08 68.6 19.7 184 7-198 38-222 (307)
45 2qfc_A PLCR protein; TPR, HTH, 98.0 0.00038 1.3E-08 68.0 18.7 156 8-168 118-275 (293)
46 2ifu_A Gamma-SNAP; membrane fu 97.9 0.00033 1.1E-08 69.4 17.9 185 334-552 26-217 (307)
47 3u3w_A Transcriptional activat 97.9 0.0019 6.6E-08 63.0 23.2 190 5-202 75-268 (293)
48 2qfc_A PLCR protein; TPR, HTH, 97.9 0.0014 5E-08 63.9 22.1 190 5-202 75-268 (293)
49 3cv0_A Peroxisome targeting si 97.8 0.018 6.2E-07 54.8 26.7 117 351-505 179-304 (327)
50 3vtx_A MAMA; tetratricopeptide 97.8 0.001 3.5E-08 59.4 16.4 154 345-552 6-163 (184)
51 3uq3_A Heat shock protein STI1 97.7 0.003 1E-07 58.1 19.4 181 3-197 3-199 (258)
52 3vtx_A MAMA; tetratricopeptide 97.7 0.0029 9.8E-08 56.4 18.7 153 3-182 3-155 (184)
53 3uq3_A Heat shock protein STI1 97.7 0.0025 8.6E-08 58.7 18.5 177 6-200 39-236 (258)
54 2pl2_A Hypothetical conserved 97.7 0.00096 3.3E-08 62.6 15.7 151 4-182 4-165 (217)
55 3as5_A MAMA; tetratricopeptide 97.7 0.004 1.4E-07 53.9 18.4 166 3-198 6-171 (186)
56 1qqe_A Vesicular transport pro 97.7 0.0042 1.4E-07 60.9 20.5 182 8-198 40-226 (292)
57 1fch_A Peroxisomal targeting s 97.6 0.0029 9.9E-08 62.0 19.0 133 44-197 217-356 (368)
58 2q7f_A YRRB protein; TPR, prot 97.6 0.0057 1.9E-07 56.0 19.6 150 5-181 57-206 (243)
59 2ho1_A Type 4 fimbrial biogene 97.6 0.0043 1.5E-07 57.6 18.9 152 5-181 37-188 (252)
60 2vq2_A PILW, putative fimbrial 97.6 0.0056 1.9E-07 55.0 18.9 154 4-182 7-161 (225)
61 3u4t_A TPR repeat-containing p 97.6 0.0055 1.9E-07 57.4 19.3 134 6-159 4-137 (272)
62 2pl2_A Hypothetical conserved 97.6 0.0013 4.4E-08 61.7 14.7 158 349-552 44-207 (217)
63 1a17_A Serine/threonine protei 97.6 0.0024 8.1E-08 55.1 15.3 142 3-165 11-152 (166)
64 4i17_A Hypothetical protein; T 97.6 0.0035 1.2E-07 58.0 17.2 157 6-181 8-166 (228)
65 2ho1_A Type 4 fimbrial biogene 97.5 0.0037 1.3E-07 58.0 17.3 133 5-158 71-203 (252)
66 4gyw_A UDP-N-acetylglucosamine 97.5 0.0035 1.2E-07 71.1 20.2 156 4-186 8-163 (723)
67 4b4t_Q 26S proteasome regulato 97.4 0.021 7.1E-07 57.6 22.7 191 5-202 55-247 (434)
68 2yhc_A BAMD, UPF0169 lipoprote 97.4 0.021 7.2E-07 53.4 20.8 169 5-183 4-199 (225)
69 2vq2_A PILW, putative fimbrial 97.4 0.0051 1.8E-07 55.3 15.7 120 346-504 10-130 (225)
70 4g1t_A Interferon-induced prot 97.4 0.081 2.8E-06 53.9 26.5 161 5-182 94-261 (472)
71 2fo7_A Synthetic consensus TPR 97.4 0.0046 1.6E-07 50.3 13.9 131 6-159 2-132 (136)
72 2q7f_A YRRB protein; TPR, prot 97.4 0.0079 2.7E-07 55.0 16.7 151 348-552 61-215 (243)
73 3as5_A MAMA; tetratricopeptide 97.3 0.0045 1.5E-07 53.6 14.0 156 343-552 7-166 (186)
74 3qky_A Outer membrane assembly 97.3 0.0036 1.2E-07 59.5 14.1 146 5-159 52-224 (261)
75 2yhc_A BAMD, UPF0169 lipoprote 97.2 0.0057 1.9E-07 57.3 14.1 140 5-156 41-210 (225)
76 4ga2_A E3 SUMO-protein ligase 97.2 0.0021 7.3E-08 57.0 10.5 127 11-160 3-130 (150)
77 4gcn_A Protein STI-1; structur 97.2 0.012 4.2E-07 50.6 14.8 104 351-485 15-118 (127)
78 1hh8_A P67PHOX, NCF-2, neutrop 97.2 0.0091 3.1E-07 54.1 14.7 142 5-162 6-153 (213)
79 1elr_A TPR2A-domain of HOP; HO 97.1 0.0076 2.6E-07 49.2 12.5 106 4-115 3-108 (131)
80 4gyw_A UDP-N-acetylglucosamine 97.1 0.013 4.5E-07 66.3 18.5 149 350-552 15-167 (723)
81 1xnf_A Lipoprotein NLPI; TPR, 97.1 0.025 8.6E-07 52.7 17.0 100 4-116 42-141 (275)
82 3mkr_A Coatomer subunit epsilo 97.1 0.26 8.9E-06 48.4 25.3 145 18-197 12-156 (291)
83 1xnf_A Lipoprotein NLPI; TPR, 97.0 0.03 1E-06 52.1 17.3 102 345-484 44-145 (275)
84 3urz_A Uncharacterized protein 97.0 0.019 6.5E-07 53.2 15.6 166 348-552 8-179 (208)
85 4b4t_Q 26S proteasome regulato 97.0 0.031 1.1E-06 56.3 18.4 194 5-205 4-209 (434)
86 4abn_A Tetratricopeptide repea 96.9 0.015 5.1E-07 61.6 15.8 167 5-199 102-286 (474)
87 4i17_A Hypothetical protein; T 96.9 0.017 5.8E-07 53.3 13.9 123 414-552 13-139 (228)
88 1ouv_A Conserved hypothetical 96.8 0.062 2.1E-06 50.9 18.0 142 5-180 6-158 (273)
89 2dba_A Smooth muscle cell asso 96.8 0.016 5.6E-07 48.7 12.5 103 4-116 27-129 (148)
90 2vsy_A XCC0866; transferase, g 96.8 0.015 5.3E-07 62.2 15.2 131 5-158 23-156 (568)
91 3gyz_A Chaperone protein IPGC; 96.8 0.019 6.4E-07 51.9 13.4 106 348-491 40-145 (151)
92 3urz_A Uncharacterized protein 96.8 0.016 5.4E-07 53.8 13.1 102 5-117 4-119 (208)
93 2xev_A YBGF; tetratricopeptide 96.8 0.0084 2.9E-07 49.8 10.1 103 6-115 3-105 (129)
94 2pzi_A Probable serine/threoni 96.8 0.023 8E-07 63.1 16.3 151 355-552 402-556 (681)
95 2xm6_A Protein corresponding t 96.7 0.72 2.5E-05 48.0 32.9 106 422-551 310-424 (490)
96 4abn_A Tetratricopeptide repea 96.7 0.013 4.5E-07 62.0 12.8 153 5-181 137-305 (474)
97 3mkr_A Coatomer subunit epsilo 96.6 0.067 2.3E-06 52.7 17.1 163 5-198 65-227 (291)
98 1elr_A TPR2A-domain of HOP; HO 96.6 0.12 4.1E-06 41.9 15.9 107 348-485 8-114 (131)
99 2vsy_A XCC0866; transferase, g 96.6 0.036 1.2E-06 59.2 15.9 137 18-181 2-138 (568)
100 3rkv_A Putative peptidylprolyl 96.5 0.16 5.4E-06 44.5 17.0 119 346-484 13-131 (162)
101 4gco_A Protein STI-1; structur 96.5 0.028 9.5E-07 48.4 11.7 101 345-483 14-114 (126)
102 2lni_A Stress-induced-phosphop 96.5 0.042 1.4E-06 45.1 12.4 112 347-499 19-130 (133)
103 2vyi_A SGTA protein; chaperone 96.5 0.12 4.1E-06 41.7 14.8 118 344-502 12-129 (131)
104 2e2e_A Formate-dependent nitri 96.4 0.015 5.1E-07 51.6 9.8 127 13-162 18-147 (177)
105 3q49_B STIP1 homology and U bo 96.4 0.05 1.7E-06 45.5 12.6 102 4-118 8-109 (137)
106 4gcn_A Protein STI-1; structur 96.4 0.046 1.6E-06 46.9 12.4 108 2-115 5-112 (127)
107 2vyi_A SGTA protein; chaperone 96.4 0.061 2.1E-06 43.5 12.4 100 4-116 11-110 (131)
108 2xev_A YBGF; tetratricopeptide 96.3 0.039 1.3E-06 45.6 11.2 87 414-505 8-94 (129)
109 3sz7_A HSC70 cochaperone (SGT) 96.3 0.078 2.7E-06 46.5 13.7 108 40-165 7-114 (164)
110 2fo7_A Synthetic consensus TPR 96.3 0.11 3.9E-06 41.7 13.6 114 351-505 8-121 (136)
111 3rkv_A Putative peptidylprolyl 96.2 0.086 2.9E-06 46.2 13.6 107 43-160 10-127 (162)
112 3sz7_A HSC70 cochaperone (SGT) 96.2 0.048 1.6E-06 48.0 11.9 103 344-484 11-113 (164)
113 2pzi_A Probable serine/threoni 96.2 0.031 1.1E-06 62.2 13.1 146 5-178 433-578 (681)
114 1ouv_A Conserved hypothetical 96.2 0.31 1E-05 46.0 18.4 141 6-180 39-194 (273)
115 1hh8_A P67PHOX, NCF-2, neutrop 96.2 0.056 1.9E-06 48.8 12.6 124 414-552 12-143 (213)
116 3upv_A Heat shock protein STI1 96.2 0.054 1.9E-06 45.2 11.6 97 346-480 6-102 (126)
117 4ga2_A E3 SUMO-protein ligase 96.2 0.061 2.1E-06 47.4 12.3 98 6-116 32-130 (150)
118 1a17_A Serine/threonine protei 96.2 0.12 4E-06 44.2 13.8 117 413-551 18-138 (166)
119 3qou_A Protein YBBN; thioredox 96.1 0.34 1.1E-05 47.3 18.7 153 5-182 117-269 (287)
120 2h6f_A Protein farnesyltransfe 96.1 0.29 9.8E-06 50.8 19.0 153 5-183 97-249 (382)
121 2e2e_A Formate-dependent nitri 96.1 0.039 1.3E-06 48.8 10.6 100 5-116 44-145 (177)
122 3upv_A Heat shock protein STI1 96.1 0.13 4.5E-06 42.7 13.4 101 43-161 3-103 (126)
123 1elw_A TPR1-domain of HOP; HOP 96.0 0.065 2.2E-06 42.6 10.8 98 5-115 4-101 (118)
124 2lni_A Stress-induced-phosphop 96.0 0.068 2.3E-06 43.8 11.1 101 3-116 14-114 (133)
125 2r5s_A Uncharacterized protein 96.0 0.043 1.5E-06 49.1 10.6 152 6-183 7-159 (176)
126 2fbn_A 70 kDa peptidylprolyl i 96.0 0.1 3.4E-06 47.4 13.0 106 3-116 36-152 (198)
127 3q49_B STIP1 homology and U bo 95.9 0.083 2.8E-06 44.1 11.5 100 345-482 10-109 (137)
128 2kck_A TPR repeat; tetratricop 95.9 0.03 1E-06 44.4 8.1 99 6-115 7-106 (112)
129 1na0_A Designed protein CTPR3; 95.9 0.22 7.5E-06 39.7 13.4 103 39-159 4-106 (125)
130 2ond_A Cleavage stimulation fa 95.9 0.49 1.7E-05 46.2 18.4 167 7-200 101-270 (308)
131 2vgx_A Chaperone SYCD; alterna 95.8 0.14 5E-06 45.0 13.1 98 347-482 24-121 (148)
132 4b4t_P 26S proteasome regulato 95.8 0.99 3.4E-05 48.0 21.9 189 20-226 111-304 (445)
133 1elw_A TPR1-domain of HOP; HOP 95.8 0.11 3.7E-06 41.3 11.2 98 348-483 8-105 (118)
134 1hxi_A PEX5, peroxisome target 95.8 0.038 1.3E-06 47.1 8.9 95 8-115 20-114 (121)
135 2xm6_A Protein corresponding t 95.8 2.2 7.6E-05 44.3 31.7 142 5-180 39-195 (490)
136 2xcb_A PCRH, regulatory protei 95.8 0.07 2.4E-06 46.0 10.6 94 350-481 24-117 (142)
137 2dba_A Smooth muscle cell asso 95.8 0.19 6.5E-06 42.0 13.1 104 344-482 28-131 (148)
138 3gyz_A Chaperone protein IPGC; 95.7 0.07 2.4E-06 48.1 10.6 101 4-117 35-135 (151)
139 1na0_A Designed protein CTPR3; 95.7 0.35 1.2E-05 38.5 13.8 98 348-483 13-110 (125)
140 4f3v_A ESX-1 secretion system 95.6 0.079 2.7E-06 53.6 11.8 122 415-552 109-230 (282)
141 2xcb_A PCRH, regulatory protei 95.6 0.11 3.8E-06 44.7 11.1 101 4-117 17-117 (142)
142 2h6f_A Protein farnesyltransfe 95.5 0.28 9.6E-06 50.9 15.9 151 346-550 99-255 (382)
143 3rjv_A Putative SEL1 repeat pr 95.5 0.51 1.7E-05 43.7 16.2 145 5-180 18-174 (212)
144 4gco_A Protein STI-1; structur 95.4 0.13 4.4E-06 44.1 11.1 101 3-116 11-111 (126)
145 2fbn_A 70 kDa peptidylprolyl i 95.4 0.28 9.5E-06 44.3 13.9 107 43-160 37-152 (198)
146 2r5s_A Uncharacterized protein 95.4 0.17 5.9E-06 45.1 12.3 131 5-157 40-171 (176)
147 3k9i_A BH0479 protein; putativ 95.4 0.057 1.9E-06 45.0 8.5 90 18-117 3-92 (117)
148 2hr2_A Hypothetical protein; a 95.4 0.13 4.6E-06 47.7 11.5 91 449-551 10-123 (159)
149 3txn_A 26S proteasome regulato 95.3 0.96 3.3E-05 47.7 19.2 117 45-166 98-217 (394)
150 1p5q_A FKBP52, FK506-binding p 95.3 0.25 8.5E-06 49.7 14.2 134 343-502 146-279 (336)
151 2ond_A Cleavage stimulation fa 95.0 0.32 1.1E-05 47.5 13.6 137 7-161 136-272 (308)
152 1p5q_A FKBP52, FK506-binding p 94.8 0.49 1.7E-05 47.5 14.8 123 413-551 152-285 (336)
153 2vgx_A Chaperone SYCD; alterna 94.8 0.36 1.2E-05 42.4 12.2 88 414-512 27-118 (148)
154 3qou_A Protein YBBN; thioredox 94.8 0.17 5.7E-06 49.5 11.0 114 415-552 124-241 (287)
155 2kck_A TPR repeat; tetratricop 94.7 0.23 7.8E-06 39.0 9.8 82 415-505 13-95 (112)
156 3k9i_A BH0479 protein; putativ 94.7 0.11 3.9E-06 43.1 8.2 62 414-483 33-94 (117)
157 1hxi_A PEX5, peroxisome target 94.6 0.18 6.1E-06 42.8 9.4 93 351-481 24-116 (121)
158 2c2l_A CHIP, carboxy terminus 94.5 0.28 9.7E-06 47.8 11.9 111 5-128 4-114 (281)
159 2l6j_A TPR repeat-containing p 94.2 0.2 6.9E-06 39.9 8.5 82 414-503 10-94 (111)
160 1kt0_A FKBP51, 51 kDa FK506-bi 93.8 0.56 1.9E-05 49.3 13.2 124 43-181 267-398 (457)
161 1kt0_A FKBP51, 51 kDa FK506-bi 93.6 0.82 2.8E-05 48.0 14.0 134 343-502 267-400 (457)
162 1na3_A Designed protein CTPR2; 93.6 0.73 2.5E-05 35.2 10.4 84 4-100 8-91 (91)
163 2ooe_A Cleavage stimulation fa 93.5 8.4 0.00029 40.3 29.3 138 6-158 14-158 (530)
164 2l6j_A TPR repeat-containing p 93.5 0.6 2E-05 37.0 10.0 90 5-103 4-95 (111)
165 1wao_1 Serine/threonine protei 93.5 0.078 2.7E-06 56.4 5.9 130 5-155 6-135 (477)
166 1ihg_A Cyclophilin 40; ppiase 93.5 0.32 1.1E-05 49.9 10.4 106 3-116 221-337 (370)
167 2c2l_A CHIP, carboxy terminus 93.3 0.46 1.6E-05 46.2 10.9 97 347-481 7-103 (281)
168 1ihg_A Cyclophilin 40; ppiase 93.3 0.43 1.5E-05 49.0 11.0 108 42-160 221-337 (370)
169 2ooe_A Cleavage stimulation fa 93.1 2.2 7.4E-05 44.9 16.4 130 7-158 323-453 (530)
170 2kat_A Uncharacterized protein 92.8 0.57 2E-05 38.3 9.0 87 63-166 3-89 (115)
171 3rjv_A Putative SEL1 repeat pr 92.7 1.5 5E-05 40.6 12.8 131 6-159 51-197 (212)
172 1na3_A Designed protein CTPR2; 92.4 1.3 4.4E-05 33.7 10.2 61 414-482 15-75 (91)
173 3ma5_A Tetratricopeptide repea 92.2 0.57 1.9E-05 38.0 8.3 71 87-167 8-78 (100)
174 1wao_1 Serine/threonine protei 92.1 0.89 3.1E-05 48.2 11.8 93 353-483 15-107 (477)
175 3ma5_A Tetratricopeptide repea 92.1 0.39 1.3E-05 39.1 7.1 61 414-482 13-73 (100)
176 4f3v_A ESX-1 secretion system 91.9 2.5 8.5E-05 42.6 14.2 161 3-183 38-223 (282)
177 3n71_A Histone lysine methyltr 91.7 6.9 0.00024 42.1 18.4 121 40-163 298-426 (490)
178 2if4_A ATFKBP42; FKBP-like, al 91.2 1.1 3.7E-05 45.0 10.7 119 343-482 178-296 (338)
179 3mv2_B Coatomer subunit epsilo 91.2 7.5 0.00026 39.6 17.0 157 7-195 73-235 (310)
180 2if4_A ATFKBP42; FKBP-like, al 91.0 0.84 2.9E-05 45.9 9.7 66 85-160 229-294 (338)
181 3qww_A SET and MYND domain-con 90.3 3.5 0.00012 43.7 14.1 100 355-478 309-410 (433)
182 2hr2_A Hypothetical protein; a 90.1 4.6 0.00016 37.3 13.0 103 413-516 16-134 (159)
183 2kc7_A BFR218_protein; tetratr 90.1 1 3.5E-05 35.4 7.6 62 414-483 6-68 (99)
184 3n71_A Histone lysine methyltr 89.8 2.8 9.6E-05 45.1 13.0 129 336-489 342-475 (490)
185 1klx_A Cysteine rich protein B 89.0 4 0.00014 35.3 11.3 109 19-158 9-125 (138)
186 3qww_A SET and MYND domain-con 88.8 4.4 0.00015 42.9 13.4 120 42-164 289-416 (433)
187 3ffl_A Anaphase-promoting comp 86.7 1.7 5.7E-05 40.8 7.6 78 22-104 39-140 (167)
188 2kat_A Uncharacterized protein 86.5 1.7 5.7E-05 35.4 6.9 61 414-482 25-85 (115)
189 2kc7_A BFR218_protein; tetratr 86.5 6.3 0.00022 30.7 10.1 82 9-100 4-85 (99)
190 3mv2_B Coatomer subunit epsilo 85.3 13 0.00043 37.9 14.0 138 345-516 137-285 (310)
191 3qwp_A SET and MYND domain-con 85.1 4.5 0.00015 42.6 10.9 69 409-478 330-399 (429)
192 3ly7_A Transcriptional activat 84.5 20 0.00068 37.5 15.3 64 448-516 275-342 (372)
193 3ffl_A Anaphase-promoting comp 83.1 6.4 0.00022 36.9 9.8 98 61-158 36-150 (167)
194 1xi4_A Clathrin heavy chain; a 82.8 10 0.00036 46.4 13.7 132 7-166 1136-1316(1630)
195 2v5f_A Prolyl 4-hydroxylase su 79.9 7.3 0.00025 32.0 8.2 72 44-116 5-76 (104)
196 4b4t_O 26S proteasome regulato 78.6 57 0.0019 33.8 16.4 99 415-516 134-238 (393)
197 4b4t_R RPN7, 26S proteasome re 78.2 47 0.0016 34.6 15.7 68 415-484 175-242 (429)
198 3txn_A 26S proteasome regulato 77.5 73 0.0025 33.3 22.1 96 415-512 106-207 (394)
199 1klx_A Cysteine rich protein B 76.7 13 0.00045 31.9 9.3 88 11-114 31-125 (138)
200 3e4b_A ALGK; tetratricopeptide 76.0 29 0.00099 35.9 13.3 138 7-178 178-328 (452)
201 3ly7_A Transcriptional activat 75.9 56 0.0019 34.1 15.3 126 19-159 213-339 (372)
202 4h7y_A Dual specificity protei 73.7 21 0.00073 33.1 10.0 100 5-116 13-124 (161)
203 3qwp_A SET and MYND domain-con 71.8 16 0.00056 38.3 10.1 103 59-164 301-405 (429)
204 2v5f_A Prolyl 4-hydroxylase su 70.0 23 0.00079 28.8 8.7 69 414-483 11-79 (104)
205 3e4b_A ALGK; tetratricopeptide 69.6 36 0.0012 35.1 12.2 60 88-157 178-244 (452)
206 3bee_A Putative YFRE protein; 67.7 14 0.00048 30.2 6.9 63 45-114 7-71 (93)
207 3u64_A Protein TP_0956; tetrat 65.3 56 0.0019 33.2 12.0 101 428-535 176-293 (301)
208 3bee_A Putative YFRE protein; 64.7 29 0.00098 28.3 8.2 62 89-160 9-73 (93)
209 4b4t_P 26S proteasome regulato 61.9 1.5E+02 0.005 31.1 15.1 89 407-499 178-269 (445)
210 1zu2_A Mitochondrial import re 59.7 20 0.00068 32.9 6.9 75 14-100 11-94 (158)
211 1zu2_A Mitochondrial import re 59.1 35 0.0012 31.3 8.5 52 424-483 62-124 (158)
212 3t5v_B Nuclear mRNA export pro 55.7 46 0.0016 35.6 9.9 72 89-162 179-253 (455)
213 4b4t_R RPN7, 26S proteasome re 52.6 79 0.0027 32.9 11.1 97 85-189 130-226 (429)
214 4fhn_B Nucleoporin NUP120; pro 52.1 1.1E+02 0.0038 36.0 13.3 171 48-238 846-1041(1139)
215 3t5v_B Nuclear mRNA export pro 51.8 1.2E+02 0.0042 32.3 12.5 127 364-502 139-280 (455)
216 3t5x_A PCI domain-containing p 51.6 40 0.0014 31.8 7.9 55 448-502 12-68 (203)
217 2r9g_A AAA ATPase, central reg 50.1 64 0.0022 31.0 8.8 66 134-202 50-119 (204)
218 2wpv_A GET4, UPF0363 protein Y 49.4 41 0.0014 34.2 7.9 82 429-511 114-212 (312)
219 3bge_A Predicted ATPase; struc 47.7 64 0.0022 31.0 8.4 55 145-202 59-113 (201)
220 1pc2_A Mitochondria fission pr 44.9 26 0.0009 32.0 5.1 81 465-552 13-93 (152)
221 3ctd_A Putative ATPase, AAA fa 43.4 49 0.0017 32.1 6.9 54 145-202 87-140 (213)
222 1nzn_A CGI-135 protein, fissio 39.9 56 0.0019 28.9 6.3 81 465-552 16-96 (126)
223 1xi4_A Clathrin heavy chain; a 38.8 4.2E+02 0.014 32.9 15.3 55 415-482 1112-1166(1630)
224 1b89_A Protein (clathrin heavy 37.5 29 0.001 37.1 4.8 82 87-177 149-250 (449)
225 3u64_A Protein TP_0956; tetrat 35.7 1.3E+02 0.0043 30.6 8.9 108 39-160 149-270 (301)
226 1pc2_A Mitochondria fission pr 34.5 2E+02 0.0069 26.0 9.4 59 7-71 34-97 (152)
227 4e6h_A MRNA 3'-END-processing 32.9 4.7E+02 0.016 29.0 13.9 173 8-201 380-571 (679)
228 4b4t_S RPN3, 26S proteasome re 32.2 1.5E+02 0.005 32.4 9.3 128 421-552 149-292 (523)
229 3lpz_A GET4 (YOR164C homolog); 28.8 1.5E+02 0.005 30.5 8.2 75 430-505 117-205 (336)
230 4e6h_A MRNA 3'-END-processing 28.6 3.9E+02 0.013 29.7 12.3 144 8-171 436-580 (679)
231 2vkj_A TM1634; membrane protei 25.7 2E+02 0.007 24.3 6.9 38 455-492 58-95 (106)
232 2ff4_A Probable regulatory pro 24.5 3.9E+02 0.013 27.1 10.6 107 356-478 127-233 (388)
233 4g26_A Pentatricopeptide repea 24.1 6.4E+02 0.022 26.4 15.4 86 417-511 114-199 (501)
234 1zv1_A Doublesex protein; UBA 23.7 82 0.0028 24.8 3.9 30 348-377 29-58 (65)
235 1y8m_A FIS1; mitochondria, unk 23.7 87 0.003 28.5 4.8 60 488-552 40-99 (144)
236 1vh6_A Flagellar protein FLIS; 22.7 2.3E+02 0.0079 25.4 7.5 89 345-443 34-122 (145)
237 4b4t_O 26S proteasome regulato 22.3 6.3E+02 0.022 25.7 18.8 112 48-161 76-200 (393)
238 3mkq_A Coatomer beta'-subunit; 21.9 2.7E+02 0.0091 29.9 9.2 132 347-491 602-785 (814)
No 1
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=4.4e-10 Score=111.92 Aligned_cols=336 Identities=13% Similarity=0.010 Sum_probs=235.1
Q ss_pred hhHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcc
Q 008745 2 EAVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSC 81 (555)
Q Consensus 2 ~~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~ 81 (555)
+..+..|+.+|+.+...+++..|+.+++.+++..+ -.|...+.+...+|.+++ ...+.++|..+++++..+.+.++ .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~-~ 82 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIG-D 82 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcc-c
Confidence 44567889999999999999999999999998765 246667889999998776 57899999999999988877663 3
Q ss_pred hhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCC----------------
Q 008745 82 FELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGD---------------- 145 (555)
Q Consensus 82 ~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D---------------- 145 (555)
......+...++.+|...|....+...+.++++..... +.........+.++.++...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc----ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 45567889999999999999988888889998876542 2334455667789999999999
Q ss_pred ----hHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHH
Q 008745 146 ----YQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNEL 221 (555)
Q Consensus 146 ----~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~ 221 (555)
+..|++.++++..++...+++..........+.++...
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-------------------------------------- 200 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL-------------------------------------- 200 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc--------------------------------------
Confidence 99999999999998888877543322222222221111
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccC
Q 008745 222 LHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDS 301 (555)
Q Consensus 222 l~vfy~lrvc~y~~a~~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~ 301 (555)
|+ .+.+++ .+++.++....
T Consensus 201 ---------------g~----~~~A~~-----------------------------------------~~~~al~~~~~- 219 (406)
T 3sf4_A 201 ---------------GN----FRDAVI-----------------------------------------AHEQRLLIAKE- 219 (406)
T ss_dssp ---------------TB----HHHHHH-----------------------------------------HHHHHHHHHHH-
T ss_pred ---------------cC----HHHHHH-----------------------------------------HHHHHHHHHHh-
Confidence 11 112221 01111111000
Q ss_pred CCCCcCcCCcccccCcccccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhc
Q 008745 302 SLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKL 381 (555)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl 381 (555)
. +.....+.++..-+......|.+++|.++++++++.... .
T Consensus 220 -------------------~----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~ 260 (406)
T 3sf4_A 220 -------------------F----------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ----L 260 (406)
T ss_dssp -------------------T----------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----T
T ss_pred -------------------c----------------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh----C
Confidence 0 000112334444455556689999999999999987332 1
Q ss_pred ccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHH
Q 008745 382 GITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAH 461 (555)
Q Consensus 382 ~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~ 461 (555)
+ . ..+. ...+.+++.+....+++++|.+.+.+..+.....+.. .....+.+.+|.+..
T Consensus 261 ~---~---------~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 261 K---D---------RAVE--------AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR--IGEGRACWSLGNAYT 318 (406)
T ss_dssp T---C---------HHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHH
T ss_pred c---C---------chHH--------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHH
Confidence 1 1 1111 1222345677788999999999999999998887653 245677888999999
Q ss_pred HhCCHHHHHHHHHHHHhhcCC---hhHHHHHHHHHHHHHhhcCCcc
Q 008745 462 SVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCIGDAE 504 (555)
Q Consensus 462 s~g~~~~A~~~F~~A~k~t~s---~~~~~~~~lnlAi~yL~~g~~~ 504 (555)
..|++++|...|..|++..+. +.....+..+++.+|...|++.
T Consensus 319 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 319 ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 999999999999999877533 4455666777888888877753
No 2
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=4e-09 Score=106.43 Aligned_cols=318 Identities=12% Similarity=0.014 Sum_probs=224.5
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~ 82 (555)
..+..|+.+|+.+...+++..|+.+++.+++..+ -.|...+.+...+|.+++ ...+.++|..+++++..+.+.++. .
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~-~ 122 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMND-R 122 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccC-c
Confidence 4567888999999999999999999999998765 247777889999999887 478999999999999888777643 4
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCC-----------------
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGD----------------- 145 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D----------------- 145 (555)
.....+...++.+|...|....+...+.++++..... ..........+.++.++...|+
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL----GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 6667889999999999999988888889999886542 1234555667789999999999
Q ss_pred hHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHH
Q 008745 146 YQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIF 225 (555)
Q Consensus 146 ~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vf 225 (555)
+..|++.+++...++...+++..........+.+++.. .+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~--------------------------------------- 238 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL-GD--------------------------------------- 238 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TC---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CC---------------------------------------
Confidence 99999999999888888877644322222222222211 11
Q ss_pred HHHhhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008745 226 YRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTG 305 (555)
Q Consensus 226 y~lrvc~y~~a~~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~~~~~ 305 (555)
.++|++. +...+ +......
T Consensus 239 -----------------~~~A~~~-----------------~~~al---------------------~~~~~~~------ 257 (411)
T 4a1s_A 239 -----------------FQAAIEH-----------------HQERL---------------------RIAREFG------ 257 (411)
T ss_dssp -----------------HHHHHHH-----------------HHHHH---------------------HHHHHHT------
T ss_pred -----------------hHHHHHH-----------------HHHHH---------------------HHHHhcC------
Confidence 1111110 00011 0000000
Q ss_pred cCcCCcccccCcccccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCc
Q 008745 306 KEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITD 385 (555)
Q Consensus 306 ~~~~~~~~~~~~~~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~ 385 (555)
.....+.++..-+......|.+++|.++++++++.... .+
T Consensus 258 ---------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~--- 297 (411)
T 4a1s_A 258 ---------------------------------DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE----LG--- 297 (411)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH----TT---
T ss_pred ---------------------------------CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH----cC---
Confidence 00112234444455666789999999999999988432 11
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCC
Q 008745 386 GVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC 465 (555)
Q Consensus 386 ~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~ 465 (555)
...+. ...+.+++.+....+++++|.+.+.+..+.....+.. .....+++.+|.+....|+
T Consensus 298 ---------~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 298 ---------EREVE--------AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR--IGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp ---------CHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHTTC
T ss_pred ---------CHHHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh--HHHHHHHHHHHHHHHHhcc
Confidence 11111 1222345677788999999999999999998877543 2456778889999999999
Q ss_pred HHHHHHHHHHHHhhcCChhHHH
Q 008745 466 YSEAAFHYVEAAKITESKSMQA 487 (555)
Q Consensus 466 ~~~A~~~F~~A~k~t~s~~~~~ 487 (555)
+++|...|..|+++.++-..+.
T Consensus 359 ~~~A~~~~~~al~~~~~~~~~~ 380 (411)
T 4a1s_A 359 HERALKYAEQHLQLAXXXXXXX 380 (411)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccch
Confidence 9999999999999877665443
No 3
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=3.9e-09 Score=100.95 Aligned_cols=311 Identities=12% Similarity=0.002 Sum_probs=212.7
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+..|...|+.+...+++..|+.+++.+++..+ -.|...+.+...+|.+++ ...|.++|..+++++..+.+..+ ....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~-~~~~ 81 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIG-DQLG 81 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHT-CHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccc-ccHH
Confidence 45678889999999999999999999998765 256677888999999866 57799999999999988776653 2455
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCC-------------------
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGD------------------- 145 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D------------------- 145 (555)
...+...++.+|...|....+...+.++++..... +.........+.++.++...|+
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 67888999999999999988888889998876542 2234445566788999999999
Q ss_pred -hHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHH
Q 008745 146 -YQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHI 224 (555)
Q Consensus 146 -~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~v 224 (555)
+..|++.++.+..++...+++..........+.+.+.. .
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-~--------------------------------------- 197 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL-G--------------------------------------- 197 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-T---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-C---------------------------------------
Confidence 99999999998888888777543322222222221111 1
Q ss_pred HHHHhhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccCCCC
Q 008745 225 FYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLT 304 (555)
Q Consensus 225 fy~lrvc~y~~a~~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~~~~ 304 (555)
+ .+++++. ++..+ +......
T Consensus 198 -------------~----~~~A~~~-----------------~~~a~---------------------~~~~~~~----- 217 (338)
T 3ro2_A 198 -------------N----FRDAVIA-----------------HEQRL---------------------LIAKEFG----- 217 (338)
T ss_dssp -------------C----HHHHHHH-----------------HHHHH---------------------HHHHHHT-----
T ss_pred -------------C----HHHHHHH-----------------HHHHH---------------------HHHHhcC-----
Confidence 1 1111110 00011 0000000
Q ss_pred CcCcCCcccccCcccccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccC
Q 008745 305 GKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGIT 384 (555)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~ 384 (555)
.....+.++..-+......|.+++|.++++++++.... .+
T Consensus 218 ----------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~-- 257 (338)
T 3ro2_A 218 ----------------------------------DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ----LK-- 257 (338)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TT--
T ss_pred ----------------------------------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----hc--
Confidence 00112223333344455678999999999999887332 11
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhC
Q 008745 385 DGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG 464 (555)
Q Consensus 385 ~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g 464 (555)
. ..+ ....+.+++.+....+++++|.+.+.++.+.....+.. .....+.+.+|.+....|
T Consensus 258 -~---------~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 258 -D---------RAV--------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR--IGEGRACWSLGNAYTALG 317 (338)
T ss_dssp -C---------HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHT
T ss_pred -c---------hhH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHcC
Confidence 1 111 11222344667788999999999999999988776542 245677888999999999
Q ss_pred CHHHHHHHHHHHHhhcCC
Q 008745 465 CYSEAAFHYVEAAKITES 482 (555)
Q Consensus 465 ~~~~A~~~F~~A~k~t~s 482 (555)
++++|...|..|++..++
T Consensus 318 ~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 318 NHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHC---
T ss_pred ChHHHHHHHHHHHHHHHh
Confidence 999999999999987654
No 4
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.22 E-value=6.9e-08 Score=95.98 Aligned_cols=351 Identities=13% Similarity=0.050 Sum_probs=221.1
Q ss_pred HHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcc
Q 008745 43 EVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122 (555)
Q Consensus 43 EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~ 122 (555)
.+.+-+..|..++. ..+.++|..+++++..+ -|...+....+...|+.+|...|....+...+.++++.....
T Consensus 8 ~~~~l~~~g~~~~~-~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--- 80 (406)
T 3sf4_A 8 SCLELALEGERLCK-SGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--- 80 (406)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHH-hccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---
Confidence 34555677777654 67999999999999664 345556777889999999999999888888889998887542
Q ss_pred cccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHH
Q 008745 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWE 202 (555)
Q Consensus 123 ~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~ 202 (555)
..........+.++.++...||+..|+..++++..++...+++..........+.++....+ ... +... +
T Consensus 81 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~-------~~~~-~ 150 (406)
T 3sf4_A 81 -GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK-SFG-------CPGP-Q 150 (406)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH-TCC-------------
T ss_pred -cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC-ccc-------cccc-c
Confidence 12344456667899999999999999999999999999988865443222222222221100 000 0000 0
Q ss_pred hcCccccccccchhhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHH
Q 008745 203 SIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERS 282 (555)
Q Consensus 203 ~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a~~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~ 282 (555)
...+. +.+ ..+..+.++
T Consensus 151 --------~~~~~--~~~------------------a~~~~~~A~----------------------------------- 167 (406)
T 3sf4_A 151 --------DVGEF--PEE------------------VRDALQAAV----------------------------------- 167 (406)
T ss_dssp ----------CCC--CHH------------------HHHHHHHHH-----------------------------------
T ss_pred --------hhhhh--hhh------------------HHHHHHHHH-----------------------------------
Confidence 00000 000 000111111
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcCcCCcccccCcccccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHH
Q 008745 283 ALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKE 362 (555)
Q Consensus 283 ~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~k 362 (555)
+.+++.++.... . +.....+-++..-+......|.+++
T Consensus 168 ------~~~~~al~~~~~--------------------~----------------~~~~~~~~~~~~la~~~~~~g~~~~ 205 (406)
T 3sf4_A 168 ------DFYEENLSLVTA--------------------L----------------GDRAAQGRAFGNLGNTHYLLGNFRD 205 (406)
T ss_dssp ------HHHHHHHHHHHH--------------------T----------------TCHHHHHHHHHHHHHHHHHHTBHHH
T ss_pred ------HHHHHHHHHHHh--------------------c----------------cCcHHHHHHHHHHHHHHHHccCHHH
Confidence 111222211000 0 0011123344444555566799999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 008745 363 CMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFP 442 (555)
Q Consensus 363 A~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P 442 (555)
|.++++++++.... .+ . ..+.+.+| .+++.+....+++++|.+.+.+..+.....+
T Consensus 206 A~~~~~~al~~~~~----~~---~---------~~~~~~~~--------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 206 AVIAHEQRLLIAKE----FG---D---------KAAERRAY--------SNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp HHHHHHHHHHHHHH----TT---C---------HHHHHHHH--------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh----cC---C---------cHHHHHHH--------HHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 99999999987432 11 1 11111222 3446677889999999999999999887775
Q ss_pred chhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC---ChhHHHHHHHHHHHHHhhcCCccc----HHHHHHhhCc
Q 008745 443 TILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGP 515 (555)
Q Consensus 443 ~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~---s~~~~~~~~lnlAi~yL~~g~~~s----~~~aL~li~P 515 (555)
.. .....+.+.+|.+....|++++|...|..|++... ++.....+..+++.+|...|+.+. +.+++++...
T Consensus 262 ~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 262 DR--AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp CH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred Cc--hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 43 24577888899999999999999999999987653 344556677779999999888653 5555554322
Q ss_pred cccccccccchhHHHHHHHHHHHHHHhhcChhh
Q 008745 516 VYQMKDTINGVREEASLHFAYGLLLMRQQDFQE 548 (555)
Q Consensus 516 ~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~e 548 (555)
. ....+.+-+++.-|......|++.+
T Consensus 340 ~-------~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 340 V-------GDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp T-------TCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred h-------cCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1 1122355667777777777777644
No 5
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.12 E-value=2.7e-07 Score=93.00 Aligned_cols=320 Identities=12% Similarity=0.050 Sum_probs=208.7
Q ss_pred hHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhh
Q 008745 41 IIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSAS 120 (555)
Q Consensus 41 ~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~ 120 (555)
..++..-+.+|..++. ..+.++|...++++..+ -+...+....+...++.+|...|....+...+.++++.....
T Consensus 45 ~~~~~~l~~~g~~~~~-~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~- 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCN-AGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM- 119 (411)
T ss_dssp HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-
Confidence 4677777888887765 57899999999999664 345557777899999999999999988888889999887542
Q ss_pred cccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHH--HHHHHHHHHHhcccCchhHHHHHHHHHH
Q 008745 121 QDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQM--FFATAILHVHLMQWDDENSVLRSINQCD 198 (555)
Q Consensus 121 e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v--~fals~~~~~L~~~~~~~~v~~~l~~~~ 198 (555)
.........++.++.++...|++..|+..+++...++.+.+++.... ++.++.++..+-+ .
T Consensus 120 ---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~------------ 182 (411)
T 4a1s_A 120 ---NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK--H------------ 182 (411)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH--H------------
T ss_pred ---cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc--c------------
Confidence 12345556677899999999999999999999999998888754332 2222222222211 0
Q ss_pred HHHHhcCccccccccchhhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCCh
Q 008745 199 RVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPS 278 (555)
Q Consensus 199 ~l~~~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a~~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~ 278 (555)
... .-.|. ++.+. .+..+.++
T Consensus 183 -~~~--------~~~~~-~~~~a------------------~~~~~~A~------------------------------- 203 (411)
T 4a1s_A 183 -LGQ--------RNPGK-FGDDV------------------KEALTRAV------------------------------- 203 (411)
T ss_dssp -HHH--------HSTTC-CCHHH------------------HHHHHHHH-------------------------------
T ss_pred -ccc--------ccchh-hhhhh------------------hHHHHHHH-------------------------------
Confidence 000 00000 00000 11112222
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCcccccCcccccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCC
Q 008745 279 RERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKG 358 (555)
Q Consensus 279 ~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg 358 (555)
+..++.++.... . +.....+.++..-+......|
T Consensus 204 ----------~~~~~al~~~~~--------------------~----------------~~~~~~~~~~~~la~~~~~~g 237 (411)
T 4a1s_A 204 ----------EFYQENLKLMRD--------------------L----------------GDRGAQGRACGNLGNTYYLLG 237 (411)
T ss_dssp ----------HHHHHHHHHHHH--------------------H----------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------HHHHHHHHHHHH--------------------c----------------CCHHHHHHHHHHHHHHHHHcC
Confidence 111111111000 0 000112334444455566689
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 008745 359 LFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWF 438 (555)
Q Consensus 359 ~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~ 438 (555)
.+++|.++++++++.... .+ ...+.. ..+.+++.+....+++++|.+.+.+..+..
T Consensus 238 ~~~~A~~~~~~al~~~~~----~~------------~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 238 DFQAAIEHHQERLRIARE----FG------------DRAAER--------RANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp CHHHHHHHHHHHHHHHHH----HT------------CHHHHH--------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHh----cC------------CcHHHH--------HHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 999999999999988433 11 111111 222345777888999999999999999998
Q ss_pred HhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC---hhHHHHHHHHHHHHHhhcCCccc----HHHHHH
Q 008745 439 IRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCIGDAES----SSQAID 511 (555)
Q Consensus 439 ~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s---~~~~~~~~lnlAi~yL~~g~~~s----~~~aL~ 511 (555)
...+.. .....+.+.+|.+....|++++|...|..++...+. +.....+..+++.+|...|+.+. +.++++
T Consensus 294 ~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 294 VELGER--EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 876443 245678888999999999999999999999877643 44455667778999999888543 555555
Q ss_pred hh
Q 008745 512 LI 513 (555)
Q Consensus 512 li 513 (555)
+-
T Consensus 372 ~~ 373 (411)
T 4a1s_A 372 LA 373 (411)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 6
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.11 E-value=5.4e-07 Score=85.96 Aligned_cols=308 Identities=12% Similarity=0.046 Sum_probs=196.1
Q ss_pred HHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccch
Q 008745 48 LRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKL 127 (555)
Q Consensus 48 Lrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~ 127 (555)
+..|.. +....+.++|..+++++..+ -|...+....+...++.+|...|....+...+.++++..... +...
T Consensus 9 ~~~g~~-~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~ 80 (338)
T 3ro2_A 9 ALEGER-LCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI----GDQL 80 (338)
T ss_dssp HHHHHH-HHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHH
T ss_pred HHHHHH-HHHhccHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc----cccH
Confidence 344554 45668999999999999664 345556778889999999999999888888889988876542 2345
Q ss_pred hHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHH--HHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcC
Q 008745 128 WSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQ--MFFATAILHVHLMQWDDENSVLRSINQCDRVWESID 205 (555)
Q Consensus 128 W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~--v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~ 205 (555)
+.....+.++.++...|++..|++.++++..++.+.+++... +++.++..+..+-+...
T Consensus 81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------- 141 (338)
T 3ro2_A 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFG------------------- 141 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSS-------------------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccc-------------------
Confidence 556677789999999999999999999999999988886543 22233332222211000
Q ss_pred ccccccccchhhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHH
Q 008745 206 PNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALA 285 (555)
Q Consensus 206 ~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a~~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~ 285 (555)
.......|.. +.+ .++..+.++
T Consensus 142 -~~~~~~~~~~-~~~------------------a~~~~~~A~-------------------------------------- 163 (338)
T 3ro2_A 142 -CPGPQDTGEF-PED------------------VRNALQAAV-------------------------------------- 163 (338)
T ss_dssp -SSSCC----C-CHH------------------HHHHHHHHH--------------------------------------
T ss_pred -cchhhhhhhh-hhh------------------HHHHHHHHH--------------------------------------
Confidence 0000000000 000 001111111
Q ss_pred HHHHHHHHHHHhcccCCCCCcCcCCcccccCcccccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHHHHH
Q 008745 286 GRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQ 365 (555)
Q Consensus 286 ~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~K 365 (555)
+.+++.++.... .+ .....+.++..-+......|.+++|.+
T Consensus 164 ---~~~~~a~~~~~~--------------------~~----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 164 ---DLYEENLSLVTA--------------------LG----------------DRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp ---HHHHHHHHHHHH--------------------HT----------------CHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ---HHHHHHHHHHHh--------------------cC----------------CHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 111111111000 00 001122334444555556799999999
Q ss_pred HHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchh
Q 008745 366 RIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTIL 445 (555)
Q Consensus 366 yl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll 445 (555)
+++++++.... .+ ...+.+.. +-+++.+....+++++|.+.+.+..+.....+..
T Consensus 205 ~~~~a~~~~~~----~~------------~~~~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~- 259 (338)
T 3ro2_A 205 AHEQRLLIAKE----FG------------DKAAERRA--------YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR- 259 (338)
T ss_dssp HHHHHHHHHHH----HT------------CHHHHHHH--------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-
T ss_pred HHHHHHHHHHh----cC------------ChHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch-
Confidence 99999987433 11 11111122 2334666778899999999999999988877543
Q ss_pred hhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC---ChhHHHHHHHHHHHHHhhcCCccc
Q 008745 446 QACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYFCIGDAES 505 (555)
Q Consensus 446 ~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~---s~~~~~~~~lnlAi~yL~~g~~~s 505 (555)
.....+.+.+|.+....|++++|...|..|++..+ ++.....+..+++.+|...|+.+.
T Consensus 260 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 260 -AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred -hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 24577788899999999999999999999987653 344555666778899988888653
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.04 E-value=1.5e-06 Score=87.47 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=105.0
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhh
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~ 86 (555)
|++.+|...-..|++..|+.+++.+++..| ...+ +..-+|.+++ ...+.++|...++++.. .-|. -.
T Consensus 1 g~~~~a~~~~~~g~~~~A~~~~~~~~~~~p---~~~~--~~~~l~~~~~-~~~~~~~a~~~~~~a~~---~~p~----~~ 67 (388)
T 1w3b_A 1 GPMELAHREYQAGDFEAAERHCMQLWRQEP---DNTG--VLLLLSSIHF-QCRRLDRSAHFSTLAIK---QNPL----LA 67 (388)
T ss_dssp CCCTHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHH--HHHHHHHHHH-HTTCHHHHHHHHHHHHH---HCTT----CH
T ss_pred ChhhHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHH--HHHHHHHHHH-HcCCHHHHHHHHHHHHh---cCCC----ch
Confidence 456789999999999999999999998765 2233 3555666554 56789999999988853 2232 24
Q ss_pred hHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCCh
Q 008745 87 RTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYP 166 (555)
Q Consensus 87 ~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~ 166 (555)
.++..|+.+|.+.|....+...++++++..-. .. ...+.++.++...|++..|++.+++..... ..
T Consensus 68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~ 133 (388)
T 1w3b_A 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-------FI---DGYINLAAALVAAGDMEGAVQAYVSALQYN----PD 133 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------CH---HHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----TT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-------hH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC
Confidence 57899999999999988777778888775321 11 123468888999999999999999866542 22
Q ss_pred hHHHHHHHHHHHHHh
Q 008745 167 DLQMFFATAILHVHL 181 (555)
Q Consensus 167 ~~~v~fals~~~~~L 181 (555)
...+.+.+..++..+
T Consensus 134 ~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 134 LYCVRSDLGNLLKAL 148 (388)
T ss_dssp CTHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHc
Confidence 234445555554443
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.94 E-value=1.2e-05 Score=77.96 Aligned_cols=326 Identities=13% Similarity=0.018 Sum_probs=198.8
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+..++.+|..+...|++..|+.+++.+++..|. . +.+...+|.+++ ...+.++|..+++++..+ -|...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~--~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~---~~~~~-- 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---N--YIAYYRRATVFL-AMGKSKAALPDLTKVIAL---KMDFT-- 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C--HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH---CTTCH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---c--HHHHHHHHHHHH-HccCHHHHHHHHHHHHHh---CCCcc--
Confidence 467899999999999999999999999987652 1 346778887776 468899999999999654 23322
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhh---hhhcccccchhHH-------HHhHHHHHHhhhcCChHHHHHHHh
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTS---SASQDVAVKLWSC-------NFNSQLANAFIIEGDYQSSISALQ 154 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~---~~~e~~~~~~W~~-------~f~fqlA~~~~~~~D~~~A~~~L~ 154 (555)
.+...++++|.+.|....+...+.++++..- .. ...|.. .-.+.+|.++...|++..|++.++
T Consensus 72 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 144 (359)
T 3ieg_A 72 --AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE-----KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLD 144 (359)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh-----HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6788999999999988877777777776432 11 112211 113456888999999999999999
Q ss_pred hHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHhhhhhh
Q 008745 155 SGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYK 234 (555)
Q Consensus 155 ~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~ 234 (555)
...... .....+.+.++.++..+-+ ++..... ....++ +.+.. ...+..+-.++ .
T Consensus 145 ~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~A~~~---~~~~~~-~~~~~------~~~~~~la~~~--------~ 199 (359)
T 3ieg_A 145 KILEVC----VWDAELRELRAECFIKEGE---PRKAISD---LKAASK-LKSDN------TEAFYKISTLY--------Y 199 (359)
T ss_dssp HHHHHC----TTCHHHHHHHHHHHHHTTC---HHHHHHH---HHHHHT-TCSCC------HHHHHHHHHHH--------H
T ss_pred HHHHhC----CCchHHHHHHHHHHHHCCC---HHHHHHH---HHHHHH-hCCCC------HHHHHHHHHHH--------H
Confidence 976553 2334667777777776643 3333222 222232 11110 00111111111 1
Q ss_pred hhhhhhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCcccc
Q 008745 235 NAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYF 314 (555)
Q Consensus 235 ~a~~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~ 314 (555)
..|+ .++++ ..+++.++. .|+
T Consensus 200 ~~~~----~~~A~-----------------------------------------~~~~~a~~~--~~~------------ 220 (359)
T 3ieg_A 200 QLGD----HELSL-----------------------------------------SEVRECLKL--DQD------------ 220 (359)
T ss_dssp HHTC----HHHHH-----------------------------------------HHHHHHHHH--CTT------------
T ss_pred HcCC----HHHHH-----------------------------------------HHHHHHHhh--Ccc------------
Confidence 1122 12222 111222222 000
Q ss_pred cCcccccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchh
Q 008745 315 GNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQH 394 (555)
Q Consensus 315 ~~~~~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~ 394 (555)
+. ..+.|+..-. -+-..+.-+......|.+++|.++++++++. .|. +
T Consensus 221 --------~~-------~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~~~----~--- 267 (359)
T 3ieg_A 221 --------HK-------RCFAHYKQVK-KLNKLIESAEELIRDGRYTDATSKYESVMKT----------EPS----V--- 267 (359)
T ss_dssp --------CH-------HHHHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CCS----S---
T ss_pred --------ch-------HHHHHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCC----c---
Confidence 00 0000000000 0001122244455678999999999888765 222 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHH
Q 008745 395 SAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYV 474 (555)
Q Consensus 395 ~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~ 474 (555)
...| ...+.+++.+....+++++|.+.+.++.+. .|.. +.+.+..|......|++++|...|.
T Consensus 268 ~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 268 AEYT---------VRSKERICHCFSKDEKPVEAIRICSEVLQM---EPDN-----VNALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp HHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHH---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---Cccc-----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1111 111233466777899999999998888775 4443 4578889999999999999999999
Q ss_pred HHHhhcCC
Q 008745 475 EAAKITES 482 (555)
Q Consensus 475 ~A~k~t~s 482 (555)
.|++..++
T Consensus 331 ~a~~~~p~ 338 (359)
T 3ieg_A 331 AAQEHNEN 338 (359)
T ss_dssp HHHTTCTT
T ss_pred HHHhcCCC
Confidence 99987654
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.92 E-value=2e-06 Score=88.45 Aligned_cols=100 Identities=9% Similarity=-0.042 Sum_probs=81.1
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~ 82 (555)
.-+..+..+|..+-..+++..|+.+++.+++..| . +.+...+|.+++. ..+.++|...++++..+ -|..
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~--~~~~~~la~~~~~-~g~~~~A~~~~~~al~~---~p~~- 72 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE----D--PVFYSNLSACYVS-VGDLKKVVEMSTKALEL---KPDY- 72 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC----C--HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHH---CSCC-
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc----c--HHHHHhHHHHHHH-HhhHHHHHHHHHHHhcc---ChHH-
Confidence 3577899999999999999999999999998764 2 5678888887765 78999999999999643 2332
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHh
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s 116 (555)
..+...++++|.+.|....+...+.++++..
T Consensus 73 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 73 ---SKVLLRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred ---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3678889999999999887777777776643
No 10
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.89 E-value=5.7e-06 Score=83.69 Aligned_cols=175 Identities=10% Similarity=0.026 Sum_probs=123.9
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008745 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (555)
Q Consensus 344 aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~ 423 (555)
+-++..-+.+....|.+++|.++++++++..+. .+ . .... ...+-+++.+....++
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~---~---------~~~~--------~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA----EK---Q---------PQLM--------GRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TT---C---------HHHH--------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH----cC---C---------hHHH--------HHHHHHHHHHHHHCCC
Confidence 344555566666789999999999999998432 21 1 1111 2223456788889999
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC---hhHHHHHHHHHHHHHhhc
Q 008745 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCI 500 (555)
Q Consensus 424 ~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s---~~~~~~~~lnlAi~yL~~ 500 (555)
+++|.+.+.+..+++....... ..+...+.+|......|++++|...|..|++..+. +..... ..+++.+|...
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~ 316 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILP--SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSG 316 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHhhccch--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCC
Confidence 9999999999999987764321 23778889999999999999999999999887643 333333 23478888887
Q ss_pred CCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 501 GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 501 g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
|+.+...++++..+-. . . ....+-+++.-|-....+|++++|...
T Consensus 317 ~~~~~~~~al~~~~~~----~-~--~~~~~~~~~~la~~y~~~g~~~~A~~~ 361 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESK----M-L--YADLEDFAIDVAKYYHERKNFQKASAY 361 (383)
T ss_dssp CCHHHHHHHHHHHHHT----T-C--HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHC----c-C--HHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7765577777666543 1 1 112445677888899999999999753
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.81 E-value=1.5e-05 Score=77.21 Aligned_cols=318 Identities=11% Similarity=0.027 Sum_probs=193.6
Q ss_pred HHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcc
Q 008745 43 EVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122 (555)
Q Consensus 43 EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~ 122 (555)
++...+.+|..++. ..+.++|...++++... -|.. ..+...++.+|...|....+...+.++++..-.
T Consensus 2 ~~~~~~~~~~~~~~-~g~~~~A~~~~~~~l~~---~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---- 69 (359)
T 3ieg_A 2 DVEKHLELGKKLLA-AGQLADALSQFHAAVDG---DPDN----YIAYYRRATVFLAMGKSKAALPDLTKVIALKMD---- 69 (359)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH---CTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----
T ss_pred cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh---Cccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----
Confidence 56778899998876 57899999999998643 2222 357889999999999988777777888875321
Q ss_pred cccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHH
Q 008745 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWE 202 (555)
Q Consensus 123 ~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~ 202 (555)
.. ...+.++.++...||+..|+..++.+.......+ ....+.+.+....... .....+
T Consensus 70 ---~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~----------~~~~~a----- 127 (359)
T 3ieg_A 70 ---FT---AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ-EEKEAESQLVKADEMQ----------RLRSQA----- 127 (359)
T ss_dssp ---CH---HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHH-HHHHHHHHHHHHHHHH----------HHHHHH-----
T ss_pred ---cc---hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCccc-ChHHHHHHHHHHHHHH----------HHHHHH-----
Confidence 11 3457789999999999999999998765432000 1222222222111000 000000
Q ss_pred hcCccccccccchhhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHH
Q 008745 203 SIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERS 282 (555)
Q Consensus 203 ~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a~~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~ 282 (555)
..|...|+ .+.++
T Consensus 128 ----------------------------~~~~~~~~----~~~A~----------------------------------- 140 (359)
T 3ieg_A 128 ----------------------------LDAFDGAD----YTAAI----------------------------------- 140 (359)
T ss_dssp ----------------------------HHHHHTTC----HHHHH-----------------------------------
T ss_pred ----------------------------HHHHHccC----HHHHH-----------------------------------
Confidence 00111111 22222
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcCcCCcccccCcccccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHH
Q 008745 283 ALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKE 362 (555)
Q Consensus 283 ~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~k 362 (555)
+.+++.++. .|+ + .-++..-+.+....|.+++
T Consensus 141 ------~~~~~~~~~--~~~--------------------~--------------------~~~~~~~~~~~~~~~~~~~ 172 (359)
T 3ieg_A 141 ------TFLDKILEV--CVW--------------------D--------------------AELRELRAECFIKEGEPRK 172 (359)
T ss_dssp ------HHHHHHHHH--CTT--------------------C--------------------HHHHHHHHHHHHHTTCHHH
T ss_pred ------HHHHHHHHh--CCC--------------------c--------------------hHHHHHHHHHHHHCCCHHH
Confidence 112222222 010 0 0122333444455789999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 008745 363 CMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFP 442 (555)
Q Consensus 363 A~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P 442 (555)
|.++++++++. .|. . ...| -+++.+....+++++|.+.+..+.+.....|
T Consensus 173 A~~~~~~~~~~----------~~~-----~--~~~~-------------~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 222 (359)
T 3ieg_A 173 AISDLKAASKL----------KSD-----N--TEAF-------------YKISTLYYQLGDHELSLSEVRECLKLDQDHK 222 (359)
T ss_dssp HHHHHHHHHTT----------CSC-----C--HHHH-------------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHh----------CCC-----C--HHHH-------------HHHHHHHHHcCCHHHHHHHHHHHHhhCccch
Confidence 99888777653 222 0 1122 1234556678999999999888876654444
Q ss_pred chhhhh----hhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh-hHHHHHHHHHHHHHhhcCCccc----HHHHHHhh
Q 008745 443 TILQAC----ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-SMQAMCHAYAAVSYFCIGDAES----SSQAIDLI 513 (555)
Q Consensus 443 ~ll~~~----~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~-~~~~~~~lnlAi~yL~~g~~~s----~~~aL~li 513 (555)
...... ........|......|++++|...|..+++..++. ..+..+..+++.+|...|+.+. +.++++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 301 (359)
T 3ieg_A 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM- 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Confidence 432211 11224456888999999999999999999877654 3444556678888888888553 4555542
Q ss_pred CccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 514 GPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 514 ~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
.|. ..-+++..|...+..|++++|...
T Consensus 302 ~~~------------~~~~~~~~~~~~~~~g~~~~A~~~ 328 (359)
T 3ieg_A 302 EPD------------NVNALKDRAEAYLIEEMYDEAIQD 328 (359)
T ss_dssp CTT------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred Ccc------------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 332 124688889999999999999764
No 12
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.80 E-value=1.5e-05 Score=79.76 Aligned_cols=158 Identities=9% Similarity=-0.023 Sum_probs=120.4
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+..+..+|.-....|++..|+..++.++...+.-.|...+.+..-+|.+++ .+.+.++|+.+++++..+....+. ...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~-~~~ 91 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDV-WHY 91 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCc-HHH
Confidence 456677777888889999999999999876553345566777777776654 578899999999999887766433 234
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhC
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~ 164 (555)
...+...++.+|...|....+...+.++++..... +.+...........++.++...||+..|...++.+...+...+
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ--HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--ccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 46677889999999999988888889999877541 1111133444556788999999999999999999999888777
Q ss_pred Ch
Q 008745 165 YP 166 (555)
Q Consensus 165 ~~ 166 (555)
++
T Consensus 170 ~~ 171 (373)
T 1hz4_A 170 PQ 171 (373)
T ss_dssp GG
T ss_pred cH
Confidence 65
No 13
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.73 E-value=4.3e-05 Score=77.32 Aligned_cols=174 Identities=7% Similarity=-0.062 Sum_probs=119.5
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008745 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (555)
Q Consensus 344 aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~ 423 (555)
+-++..-+.+....|.+++|.++++++++.. .+.+ . ... ....+-+++.+....++
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~----~~~~---~---------~~~--------~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELA----MDIQ---N---------DRF--------IAISLLNIANSYDRSGD 237 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHTT---C---------HHH--------HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH----HHcC---C---------HHH--------HHHHHHHHHHHHHHCCC
Confidence 4455555666677899999999999999984 2222 1 111 12233456778888999
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC---hhHHHHHHHHHHHHHhhc
Q 008745 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCI 500 (555)
Q Consensus 424 ~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s---~~~~~~~~lnlAi~yL~~ 500 (555)
+++|.+.+.+..+.+...... ..+...+.+|......|++++|...|..|++.++. +..... ..++..+|...
T Consensus 238 ~~~A~~~~~~al~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~ly~~~ 313 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVPD---LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL-FLFLQAVYKET 313 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH-HHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHhhCCh---hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCC
Confidence 999999999999988754221 12677888999999999999999999999988754 333332 23366667665
Q ss_pred CCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 501 GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 501 g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
++.+.+.++++..+.. ... .+..-+++.-|.....+|++++|...
T Consensus 314 ~~~~~~~~al~~~~~~----~~~---~~~~~~~~~la~~y~~~g~~~~A~~~ 358 (378)
T 3q15_A 314 VDERKIHDLLSYFEKK----NLH---AYIEACARSAAAVFESSCHFEQAAAF 358 (378)
T ss_dssp CCHHHHHHHHHHHHHT----TCH---HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhC----CCh---hHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5554466666655432 111 12334566788888899999998753
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.72 E-value=7.2e-05 Score=75.90 Aligned_cols=161 Identities=15% Similarity=0.023 Sum_probs=115.7
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
-+..+..+|..+...+++..|+.+++.+++..| .. +.+...+|.+++. ..+.++|...++++..+ -|..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p---~~--~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~---~p~~-- 93 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP---DN--YIAYYRRATVFLA-MGKSKAALPDLTKVIQL---KMDF-- 93 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC--HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH---CTTC--
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---cc--HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhc---CCCc--
Confidence 456788999999999999999999999998654 22 5667778887765 57899999999998654 2332
Q ss_pred hhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHH-------HHhHHHHHHhhhcCChHHHHHHHhhH
Q 008745 84 LKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSC-------NFNSQLANAFIIEGDYQSSISALQSG 156 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~-------~f~fqlA~~~~~~~D~~~A~~~L~~g 156 (555)
..+...|+++|.+.|....+...+.++++..-.... ....|.. .-.+.+|.++...|++..|+..++..
T Consensus 94 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 94 --TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE--EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467888999999999888777777777764321110 0012211 11356688888999999999999987
Q ss_pred HHHHhhhCChhHHHHHHHHHHHHHhcc
Q 008745 157 YVCATEISYPDLQMFFATAILHVHLMQ 183 (555)
Q Consensus 157 ~~~A~~~~~~~~~v~fals~~~~~L~~ 183 (555)
... +.....+.+.++.++..+-+
T Consensus 170 ~~~----~~~~~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 170 LEV----CVWDAELRELRAECFIKEGE 192 (450)
T ss_dssp HHH----CTTCHHHHHHHHHHHHHTTC
T ss_pred HHh----CCCChHHHHHHHHHHHHCCC
Confidence 654 33345667777777776644
No 15
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.72 E-value=0.00019 Score=71.90 Aligned_cols=333 Identities=14% Similarity=0.119 Sum_probs=200.0
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
..+..++.-+...+++..|+..++.+++..| +. +.+...+|.+++. ..+.++|..+++++..+ -|..
T Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p---~~--~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~---~p~~---- 100 (388)
T 1w3b_A 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP---LL--AEAYSNLGNVYKE-RGQLQEAIEHYRHALRL---KPDF---- 100 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC--HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHH---CTTC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---Cc--hHHHHHHHHHHHH-CCCHHHHHHHHHHHHHc---Ccch----
Confidence 4566777778888899999999999998754 22 4567788887765 67899999999999643 2332
Q ss_pred hhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCC
Q 008745 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISY 165 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~ 165 (555)
..++..|+.+|.+.|....+...+.++++..- + .......++.++...|++..|++.+++.... +.
T Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p 166 (388)
T 1w3b_A 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNP---D-------LYCVRSDLGNLLKALGRLEEAKACYLKAIET----QP 166 (388)
T ss_dssp HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT---T-------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH----CT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C-------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CC
Confidence 34678899999999999888888888887421 1 1234456888899999999999999986654 22
Q ss_pred hhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHhhhhhhhhhhhhhhhHH
Q 008745 166 PDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDA 245 (555)
Q Consensus 166 ~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a~~~v~~ld~ 245 (555)
....+++.++.++... .+.+.......++..+ .++. ...++.+=.+ |...++ .++
T Consensus 167 ~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~----~p~~-------------~~~~~~lg~~-~~~~~~----~~~ 221 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQ---GEIWLAIHHFEKAVTL----DPNF-------------LDAYINLGNV-LKEARI----FDR 221 (388)
T ss_dssp TCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHH----CTTC-------------HHHHHHHHHH-HHTTTC----TTH
T ss_pred CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhc----CCCc-------------HHHHHHHHHH-HHHcCC----HHH
Confidence 2244555555554433 2233222222222211 1110 0011100000 000111 111
Q ss_pred HHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCcccccCcccccCccc
Q 008745 246 AMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKL 325 (555)
Q Consensus 246 ~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~~~~~~d~~ 325 (555)
++ ...++.++. +|+ +
T Consensus 222 A~-----------------------------------------~~~~~al~~--~p~--------------------~-- 236 (388)
T 1w3b_A 222 AV-----------------------------------------AAYLRALSL--SPN--------------------H-- 236 (388)
T ss_dssp HH-----------------------------------------HHHHHHHHH--CTT--------------------C--
T ss_pred HH-----------------------------------------HHHHHHHhh--CcC--------------------C--
Confidence 11 112222222 111 0
Q ss_pred ccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHH
Q 008745 326 VLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLM 405 (555)
Q Consensus 326 ~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~ 405 (555)
+.++..-+......|.+++|.++++++++. .|. . ...|
T Consensus 237 ------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~p~-----~--~~~~------- 274 (388)
T 1w3b_A 237 ------------------AVVHGNLACVYYEQGLIDLAIDTYRRAIEL----------QPH-----F--PDAY------- 274 (388)
T ss_dssp ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------CSS-----C--HHHH-------
T ss_pred ------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCC-----C--HHHH-------
Confidence 012222233444678899999888777653 222 0 1112
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhH
Q 008745 406 LLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM 485 (555)
Q Consensus 406 L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~ 485 (555)
-+++.+....+++++|.+.+.++.+.. |.. +.....+|......|++++|...|..+++..++.
T Consensus 275 ------~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-- 338 (388)
T 1w3b_A 275 ------CNLANALKEKGSVAEAEDCYNTALRLC---PTH-----ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-- 338 (388)
T ss_dssp ------HHHHHHHHHHSCHHHHHHHHHHHHHHC---TTC-----HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC--
T ss_pred ------HHHHHHHHHcCCHHHHHHHHHHHHhhC---ccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--
Confidence 123455667899999999988887663 432 2345667888889999999999999998764432
Q ss_pred HHHHHHHHHHHHhhcCCccc----HHHHHHhhCc
Q 008745 486 QAMCHAYAAVSYFCIGDAES----SSQAIDLIGP 515 (555)
Q Consensus 486 ~~~~~lnlAi~yL~~g~~~s----~~~aL~li~P 515 (555)
..+..+++.+|...|+.+. +.++++ +.|
T Consensus 339 -~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~p 370 (388)
T 1w3b_A 339 -AAAHSNLASVLQQQGKLQEALMHYKEAIR-ISP 370 (388)
T ss_dssp -HHHHHHHHHHHHTTTCCHHHHHHHHHHHT-TCT
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCC
Confidence 2345567888888787553 455554 344
No 16
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.69 E-value=7.5e-05 Score=78.90 Aligned_cols=109 Identities=10% Similarity=0.024 Sum_probs=67.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 008745 355 RPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQM 434 (555)
Q Consensus 355 ~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~ 434 (555)
...|.+++|.++++++++. .|. ....|. .++.+..-.+++++|.+.+.++
T Consensus 384 ~~~g~~~~A~~~~~~~~~~----------~~~-------~~~~~~-------------~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTM----------DPQ-------FGPAWI-------------GFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH----------CTT-------CHHHHH-------------HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh----------CCC-------CHHHHH-------------HHHHHHHHcCCHHHHHHHHHHH
Confidence 4568888888888777653 111 012231 1244455578888888887777
Q ss_pred HHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcc
Q 008745 435 KNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 504 (555)
Q Consensus 435 ~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~ 504 (555)
.+. .|. .....+.+|..+...|++++|...|..+++...... .+-.+++.+|...|+.+
T Consensus 434 ~~~---~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 434 ARL---FQG-----THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP---LLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHT---TTT-----CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHTTCHH
T ss_pred HHh---Ccc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCHH
Confidence 654 332 134456677777778888888888888877654422 22334666777777654
No 17
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.64 E-value=6.6e-05 Score=76.18 Aligned_cols=333 Identities=10% Similarity=0.018 Sum_probs=189.6
Q ss_pred cHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHc
Q 008745 20 EIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLV 99 (555)
Q Consensus 20 ~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~ 99 (555)
....++.++..++...| -.+.+.+.+|..++. ..+.++|...++++... -|.. ..+...++.+|...
T Consensus 7 ~~~~~~~~~~~~~~~~p-----~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~l~~---~p~~----~~~~~~l~~~~~~~ 73 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSM-----ADVEKHLELGKKLLA-AGQLADALSQFHAAVDG---DPDN----YIAYYRRATVFLAM 73 (450)
T ss_dssp ----------------C-----HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH---CTTC----HHHHHHHHHHHHHT
T ss_pred ccccccccccccccccH-----HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHh---CCcc----HHHHHHHHHHHHHC
Confidence 44556666777775543 346678888988776 67899999999998543 2222 56788899999999
Q ss_pred CCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhH---HHHHHHHH
Q 008745 100 GAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDL---QMFFATAI 176 (555)
Q Consensus 100 ~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~---~v~fals~ 176 (555)
|....+...+.++++..-. . ....+.++.++...|++..|++.++...... .... .+...++.
T Consensus 74 g~~~~A~~~~~~al~~~p~-------~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~ 139 (450)
T 2y4t_A 74 GKSKAALPDLTKVIQLKMD-------F---TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN----PSENEEKEAQSQLIK 139 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTT-------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCC-------c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCChhhHHHHHHHHH
Confidence 9888777777888775321 1 2345678999999999999999998865432 1111 22222221
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHhHHHHHH
Q 008745 177 LHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQE 256 (555)
Q Consensus 177 ~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a~~~v~~ld~~~~~~~q~~~~ 256 (555)
...... ....+ ..|...|+ .++|+
T Consensus 140 ~~~~~~----------~~~~a---------------------------------~~~~~~~~----~~~A~--------- 163 (450)
T 2y4t_A 140 SDEMQR----------LRSQA---------------------------------LNAFGSGD----YTAAI--------- 163 (450)
T ss_dssp HHHHHH----------HHHHH---------------------------------HHHHHHTC----HHHHH---------
T ss_pred HHHHHH----------HHHHH---------------------------------HHHHHcCC----HHHHH---------
Confidence 110000 00000 00011111 22222
Q ss_pred HHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCcccccCcccccCcccccCCCCCcccc
Q 008745 257 IQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEW 336 (555)
Q Consensus 257 i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~f~W 336 (555)
..+++.++. +|+ +
T Consensus 164 --------------------------------~~~~~~~~~--~~~--------------------~------------- 176 (450)
T 2y4t_A 164 --------------------------------AFLDKILEV--CVW--------------------D------------- 176 (450)
T ss_dssp --------------------------------HHHHHHHHH--CTT--------------------C-------------
T ss_pred --------------------------------HHHHHHHHh--CCC--------------------C-------------
Confidence 112222222 000 0
Q ss_pred ccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008745 337 LPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVA 416 (555)
Q Consensus 337 LPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~ 416 (555)
+-++..-+......|.+++|.++++++++. .|. + ...| -+++.
T Consensus 177 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~----~---~~~~-------------~~l~~ 219 (450)
T 2y4t_A 177 -------AELRELRAECFIKEGEPRKAISDLKAASKL----------KND----N---TEAF-------------YKIST 219 (450)
T ss_dssp -------HHHHHHHHHHHHHTTCGGGGHHHHHHHHHH----------HCS----C---HHHH-------------HHHHH
T ss_pred -------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCC----C---HHHH-------------HHHHH
Confidence 011222233444578999999999888765 111 0 1122 12244
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhccchhhhh----hhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC-hhHHHHHHH
Q 008745 417 VELTRSGFVEAQEALVQMKNWFIRFPTILQAC----ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHA 491 (555)
Q Consensus 417 ~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~----~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s-~~~~~~~~l 491 (555)
+....+++++|.+.+.++.+.....+...... ......-.|......|++++|...|..+++...+ +..+..+-.
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 299 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE 299 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 56667999999999988876544333322111 1122344588999999999999999999987655 334455666
Q ss_pred HHHHHHhhcCCccc----HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 492 YAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 492 nlAi~yL~~g~~~s----~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
+++.+|...|+.+. +.++++. .|. .+-+++..|.....+|++++|...
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~-~p~------------~~~~~~~l~~~~~~~~~~~~A~~~ 351 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQM-EPD------------NVNALKDRAEAYLIEEMYDEAIQD 351 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHH-CTT------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-Ccc------------cHHHHHHHHHHHHHhcCHHHHHHH
Confidence 78888888777543 3444432 332 124578888888999999999753
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.62 E-value=4.1e-05 Score=78.65 Aligned_cols=132 Identities=11% Similarity=0.056 Sum_probs=92.1
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 008745 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 427 (555)
Q Consensus 348 llsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A 427 (555)
..-+......|.+++|.++++++++. .|. + ...| -+++.+....+++++|
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~----~---~~~~-------------~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRK----------FPE----A---PEVP-------------NFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHH----------STT----C---SHHH-------------HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH----------ccc----C---HHHH-------------HHHHHHHHHCCCHHHH
Confidence 33455667789999999999888764 121 0 1122 1225556678999999
Q ss_pred HHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHH---hCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcc
Q 008745 428 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHS---VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 504 (555)
Q Consensus 428 ~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s---~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~ 504 (555)
.+.+.++.+.....|... ......+.+|..... .|++++|...|..+++..++.. .+..+++.+|...|+.+
T Consensus 392 ~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIY--VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE---QAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHTSSSCS--SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhcCHH
Confidence 999999888776665431 224477888999999 9999999999999998765432 34556788888888865
Q ss_pred c----HHHHHHhhCc
Q 008745 505 S----SSQAIDLIGP 515 (555)
Q Consensus 505 s----~~~aL~li~P 515 (555)
. +.++++ +.|
T Consensus 467 ~A~~~~~~a~~-~~~ 480 (514)
T 2gw1_A 467 EAITLFEESAD-LAR 480 (514)
T ss_dssp HHHHHHHHHHH-HCS
T ss_pred HHHHHHHHHHH-hcc
Confidence 3 555555 345
No 19
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.60 E-value=6.8e-05 Score=74.96 Aligned_cols=300 Identities=12% Similarity=0.034 Sum_probs=182.2
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhh
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~ 162 (555)
+++-++..+++.++...|....+...+.++++.... + ...+.....+.++.++...||+..|.+.++.+..++..
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 85 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP---G--WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 85 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---T--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---C--chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh
Confidence 556677888999999999887777777888775421 1 12234455677888999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 008745 163 ISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDN 242 (555)
Q Consensus 163 ~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a~~~v~~ 242 (555)
.|++...+......+.++... |+
T Consensus 86 ~~~~~~~~~~~~~la~~~~~~-----------------------------------------------------G~---- 108 (373)
T 1hz4_A 86 HDVWHYALWSLIQQSEILFAQ-----------------------------------------------------GF---- 108 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT-----------------------------------------------------TC----
T ss_pred cCcHHHHHHHHHHHHHHHHHC-----------------------------------------------------CC----
Confidence 998865543333333333322 11
Q ss_pred hHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCcccccCcccccC
Q 008745 243 LDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWG 322 (555)
Q Consensus 243 ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~~~~~~ 322 (555)
.+++.+. ....+ +..+...++.
T Consensus 109 ~~~A~~~-----------------~~~al---------------------~~~~~~~~~~-------------------- 130 (373)
T 1hz4_A 109 LQTAWET-----------------QEKAF---------------------QLINEQHLEQ-------------------- 130 (373)
T ss_dssp HHHHHHH-----------------HHHHH---------------------HHHHHTTCTT--------------------
T ss_pred HHHHHHH-----------------HHHHH---------------------HHHHHhcccc--------------------
Confidence 2222210 00111 0011100000
Q ss_pred cccccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHH
Q 008745 323 DKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGV 402 (555)
Q Consensus 323 d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~ 402 (555)
+...+.++..-+......|.+++|..++++++... .+.+ +. . ....
T Consensus 131 -----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~--~~--------~---~~~~ 176 (373)
T 1hz4_A 131 -----------------LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL----SSYQ--PQ--------Q---QLQC 176 (373)
T ss_dssp -----------------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTSC--GG--------G---GHHH
T ss_pred -----------------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----hccC--cH--------H---HHHH
Confidence 00122233333344456799999999999998762 2111 10 1 0112
Q ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 403 YLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 403 yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
| -+++.+...+|++++|.+.+.+..+.....+.. ......+....+.+....|++++|...|..++.....
T Consensus 177 ~--------~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 247 (373)
T 1hz4_A 177 L--------AMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 247 (373)
T ss_dssp H--------HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred H--------HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC
Confidence 2 123667788999999999999998887654221 1223344456667788899999999999998875543
Q ss_pred hh-HHHHHHHHHHHHHhhcCCccc----HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 483 KS-MQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 483 ~~-~~~~~~lnlAi~yL~~g~~~s----~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
.+ ....+..+++.+|+..|+.+. +.++++.... .......+-+++..|.....+|++.+|+..
T Consensus 248 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 248 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS-------LRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-------CcchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 21 223345678888988888654 3333332111 111122334778888899999999999864
No 20
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.59 E-value=0.00013 Score=75.72 Aligned_cols=158 Identities=13% Similarity=0.067 Sum_probs=106.1
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 008745 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 426 (555)
Q Consensus 347 yllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~ 426 (555)
++.-+......|.+++|.++++++++. .|. ....| -+++.+....+++++
T Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~-------~~~~~-------------~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 279 YIFLALTLADKENSQEFFKFFQKAVDL----------NPE-------YPPTY-------------YHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHHHTCCSSCCHHHHHHHHHHHHH----------CTT-------CHHHH-------------HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcc----------CCC-------CHHHH-------------HHHHHHHHhcCCHHH
Confidence 334455677889999999999888764 122 01112 123555667899999
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCccc-
Q 008745 427 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES- 505 (555)
Q Consensus 427 A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s- 505 (555)
|.+.+.++.+.. |.. +...+.+|......|++++|...|..+++...+.. .+..+++.+|...|+.+.
T Consensus 329 A~~~~~~a~~~~---~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 329 AKEDFQKAQSLN---PEN-----VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP---EVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp HHHHHHHHHHHC---TTC-----SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCHHHH
Confidence 999988887653 432 24567789999999999999999999998765442 234456888888888553
Q ss_pred ---HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhh----------cChhhhhhh
Q 008745 506 ---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ----------QDFQEARLA 552 (555)
Q Consensus 506 ---~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q----------~~~~eAr~~ 552 (555)
+.++++. .|.... ... ..+.++..|...+.+ |++++|...
T Consensus 398 ~~~~~~a~~~-~~~~~~--~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 398 IKQYDIAKRL-EEVQEK--IHV----GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HHHHHHHHHH-HHHCSS--CSS----TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCcchh--hHH----HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 4555543 343111 122 224567778788888 888888753
No 21
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.53 E-value=3.3e-06 Score=71.88 Aligned_cols=157 Identities=13% Similarity=0.075 Sum_probs=126.7
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCC-CChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcc
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVS-FLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSC 81 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~-l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~ 81 (555)
..+.++..+|..+...+++..|+.+++.+++..+. -.|...+.+...+|.+++. ..+.++|..+++++..+.+..+.
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~- 84 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKD- 84 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCC-
Confidence 45778899999999999999999999988864221 1567788899999988775 68999999999999887766533
Q ss_pred hhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHh
Q 008745 82 FELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCAT 161 (555)
Q Consensus 82 ~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~ 161 (555)
......+...++.+|...|....+...+.++++..... ..........+.++.++...||+..|++.++++..++.
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL----KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 35567788999999999999988888889999886541 12345556667899999999999999999999999998
Q ss_pred hhCC
Q 008745 162 EISY 165 (555)
Q Consensus 162 ~~~~ 165 (555)
+.|+
T Consensus 161 ~~~d 164 (164)
T 3ro3_A 161 EVGD 164 (164)
T ss_dssp TC--
T ss_pred HhCC
Confidence 7764
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.53 E-value=0.00011 Score=70.47 Aligned_cols=131 Identities=15% Similarity=0.050 Sum_probs=90.7
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhh
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~ 86 (555)
.++.+|+.+...+++..|+.+++.+++..|.-+. +...++.++ ....+.++|...++++... -|.. .
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~~~~~~-~~~~~~~~A~~~~~~~~~~---~~~~----~ 90 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS-----CLPVHIGTL-VELNKANELFYLSHKLVDL---YPSN----P 90 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-----THHHHHHHH-HHHTCHHHHHHHHHHHHHH---CTTS----T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh-----hHHHHHHHH-HHhhhHHHHHHHHHHHHHh---CcCC----H
Confidence 4678888888889999999999999887652222 233455555 4567889999999888543 2222 3
Q ss_pred hHHHHHHHHHHHcC-CCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHH
Q 008745 87 RTFSLLSQCYHLVG-AIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA 160 (555)
Q Consensus 87 ~a~sLLa~~y~~~~-~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A 160 (555)
.+...++.+|...| ....+...+.++++..-. .. ...+.++.++...|++..|++.++......
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 155 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-------YG---PAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-------CT---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-------cH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence 56778899999988 556566666776664321 11 224567888888899999999888866554
No 23
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.52 E-value=9.3e-06 Score=73.18 Aligned_cols=161 Identities=10% Similarity=-0.021 Sum_probs=130.9
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCC-ChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSF-LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l-~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~ 82 (555)
.+..+..+|..+...+++..|+.+++.++..-... .|...+.+...+|.+++ ...+.++|..+++++..+.+..+...
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 46678889999999999999999999988621111 46678889999998776 57899999999999999888776545
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhh
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~ 162 (555)
.....+...|+.+|...|....+...+.++++.... ..........+..++.++...||+..|.+.++.+.+++.+
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ----ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 567788999999999999998888888999987653 1222333455678899999999999999999999999999
Q ss_pred hCChhHH
Q 008745 163 ISYPDLQ 169 (555)
Q Consensus 163 ~~~~~~~ 169 (555)
.|++...
T Consensus 180 ~~~~~~~ 186 (203)
T 3gw4_A 180 LEDSEAV 186 (203)
T ss_dssp TTCHHHH
T ss_pred cCCHHHH
Confidence 9998543
No 24
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.48 E-value=0.00023 Score=73.75 Aligned_cols=129 Identities=9% Similarity=-0.066 Sum_probs=87.6
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008745 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (555)
Q Consensus 351 vi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~ 430 (555)
+......|.+++|.++++++++. .|. +...| .+++.+....+++++|.+.
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~----------~~~-------~~~~~-------------~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLK----------FPT-------LPEVP-------------TFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----------CTT-------CTHHH-------------HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh----------CCC-------ChHHH-------------HHHHHHHHHhCCHHHHHHH
Confidence 34444679999999999888765 222 01122 1124556678999999999
Q ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHh----------CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhc
Q 008745 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSV----------GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 500 (555)
Q Consensus 431 l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~----------g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~ 500 (555)
+.++.+.....|...... ...+..|...... |++++|...|..+++..++.. -+..+++.+|...
T Consensus 401 ~~~a~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGI--GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE---QAKIGLAQLKLQM 475 (537)
T ss_dssp HHHHHHHHHHCSSCSSTT--HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHT
T ss_pred HHHHHHcCCcchhhHHHH--HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHh
Confidence 999999887776654222 2335556666666 999999999999998765443 3457788889898
Q ss_pred CCccc----HHHHHHhhCc
Q 008745 501 GDAES----SSQAIDLIGP 515 (555)
Q Consensus 501 g~~~s----~~~aL~li~P 515 (555)
|+.+. +.++++ +.|
T Consensus 476 g~~~~A~~~~~~al~-~~~ 493 (537)
T 3fp2_A 476 EKIDEAIELFEDSAI-LAR 493 (537)
T ss_dssp TCHHHHHHHHHHHHH-HC-
T ss_pred ccHHHHHHHHHHHHH-hCC
Confidence 88653 555554 345
No 25
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.45 E-value=0.00011 Score=77.64 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=28.3
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCC
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHV 36 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~ 36 (555)
+.....++..+...|++..|+++++.+++..|
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 56778899999999999999999999998765
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.44 E-value=0.00054 Score=70.20 Aligned_cols=377 Identities=12% Similarity=0.098 Sum_probs=182.5
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhh
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~ 162 (555)
+-+-.++.+|+.+|+..|....+-..+.|+++.......+- ...........+|.++...|++..|...+++...+...
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~-~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ-AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG-CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc-cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 44556788999999999998777777899999865431111 01111122345788999999999999999998888876
Q ss_pred hCCh----hHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHhhhhhhhhhh
Q 008745 163 ISYP----DLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAH 238 (555)
Q Consensus 163 ~~~~----~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a~~ 238 (555)
..++ ...++.....+++.+.. .+++.......++..+ .|+..+ .+..+-.++|.+ ..+..+.+
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~y~~A~~~~~kal~~----~p~~~~------~~~~~~~~~~~l--~~~~~~~~ 193 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGG-NQNERAKVCFEKALEK----KPKNPE------FTSGLAIASYRL--DNWPPSQN 193 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHH----STTCHH------HHHHHHHHHHHH--HHSCCCCC
T ss_pred cccccchhhHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHh----CCCCHH------HHHHHHHHHHHh--cCchHHHH
Confidence 6543 23555555656666643 3333333333333322 333211 122233333322 22222333
Q ss_pred hhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCcccccCcc
Q 008745 239 HVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNAR 318 (555)
Q Consensus 239 ~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~~lq~i~~~~~~~~~~~~~~~~~~~~ 318 (555)
.++.+..+++-.+.. +.....+......+-.. ..+...-.+.+++.++. +|.
T Consensus 194 al~~~~~al~l~p~~----~~~~~~l~~~~~~~~~~------~~~~~~a~~~~~~al~~--~~~---------------- 245 (472)
T 4g1t_A 194 AIDPLRQAIRLNPDN----QYLKVLLALKLHKMREE------GEEEGEGEKLVEEALEK--APG---------------- 245 (472)
T ss_dssp THHHHHHHHHHCSSC----HHHHHHHHHHHHHCC------------CHHHHHHHHHHHH--CSS----------------
T ss_pred HHHHHHHHhhcCCcc----hHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHh--Ccc----------------
Confidence 333344444311100 11111111110111000 00000011222222222 000
Q ss_pred cccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHH
Q 008745 319 QAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIW 398 (555)
Q Consensus 319 ~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w 398 (555)
.. -++.--+......|.+++|.++++++++. .|.. ...|
T Consensus 246 ----------------------~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------~p~~-------~~~~ 284 (472)
T 4g1t_A 246 ----------------------VT--DVLRSAAKFYRRKDEPDKAIELLKKALEY----------IPNN-------AYLH 284 (472)
T ss_dssp ----------------------CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTC-------HHHH
T ss_pred ----------------------HH--HHHHHHHHHHHHcCchHHHHHHHHHHHHh----------CCCh-------HHHH
Confidence 00 11222345566789999999999888765 2321 1111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH----HhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHH
Q 008745 399 --MAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWF----IRFPTILQACESMIEMLRGQYAHSVGCYSEAAFH 472 (555)
Q Consensus 399 --~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~----~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~ 472 (555)
.+.+| .-...+.........+....+.....+....+ ...|.. ....+.+|......|++++|...
T Consensus 285 ~~lg~~y---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~lg~~~~~~~~~~~A~~~ 356 (472)
T 4g1t_A 285 CQIGCCY---RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL-----FRVCSILASLHALADQYEEAEYY 356 (472)
T ss_dssp HHHHHHH---HHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT-----CCCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHH---HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch-----hhhhhhHHHHHHHhccHHHHHHH
Confidence 12233 11222222222222233333333333333322 223432 23346689999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHH-HHHhhcCCccc----HHHHHHhhCccccccccccc-h---hH--------HHHHHHH
Q 008745 473 YVEAAKITESKSMQAMCHAYAA-VSYFCIGDAES----SSQAIDLIGPVYQMKDTING-V---RE--------EASLHFA 535 (555)
Q Consensus 473 F~~A~k~t~s~~~~~~~~lnlA-i~yL~~g~~~s----~~~aL~li~P~~~~~~~~~~-~---~~--------ka~~~fv 535 (555)
|+.|++...++........+.+ +.+...|+.+. +.++++ |.|.......... + -+ -+-+++.
T Consensus 357 ~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~-i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK-INQKSREKEKMKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH-SCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999988777665544444433 33334455432 455554 4553211100000 0 00 1346788
Q ss_pred HHHHHHhhcChhhhhh
Q 008745 536 YGLLLMRQQDFQEARL 551 (555)
Q Consensus 536 ~gl~~~~q~~~~eAr~ 551 (555)
-|.....+|++++|..
T Consensus 436 LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 436 LAFLQELNEKMQQADE 451 (472)
T ss_dssp HHHHHHHHHHCC----
T ss_pred HHHHHHHcCCHHHHHH
Confidence 8999999999999975
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.43 E-value=8.6e-05 Score=69.94 Aligned_cols=59 Identities=5% Similarity=-0.193 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 424 ~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
+.+|.+.+.++.+.....|..-........+.+|.+....|++++|...|..++++.++
T Consensus 195 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp SCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 77888888888888877776322334567788999999999999999999999876544
No 28
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.42 E-value=4.9e-05 Score=76.76 Aligned_cols=186 Identities=10% Similarity=0.030 Sum_probs=147.5
Q ss_pred HHhHHHHHhhccHHHHHHHHHHhhccCCCCC-hhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhh
Q 008745 9 WGLADYHENKGEIGKAVKCLEAICQSHVSFL-PIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCR 87 (555)
Q Consensus 9 l~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~-P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~ 87 (555)
+..|..+...+++..|+.+++.+++.-.+.+ |...|.+...+|.+++. ..+.+.|..++++|..+.+..+.+......
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY-MKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 3478888899999999999999997533223 56689999999988765 889999999999999999888776777788
Q ss_pred HHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCC-h
Q 008745 88 TFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISY-P 166 (555)
Q Consensus 88 a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~-~ 166 (555)
+...|+.+|...|....+...+.++++..... +........++.++.++...||+..|++.++++..++...++ |
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAE----KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 99999999999999988888889999987642 233455566778999999999999999999999999998887 4
Q ss_pred -hHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHH
Q 008745 167 -DLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWE 202 (555)
Q Consensus 167 -~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~ 202 (555)
...+++.++.++..+ .+++.......++..+.+
T Consensus 262 ~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKL---GKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp GHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHH
Confidence 345566666666555 445555555555555544
No 29
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.36 E-value=6.2e-05 Score=76.20 Aligned_cols=187 Identities=12% Similarity=0.078 Sum_probs=146.2
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhccCCCC-ChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVSF-LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l-~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
..+..+..+...+++..|+.+++-+++.-... .+...|.+...+|.+++ +..+.+.|..++++|..+.+..+.+..-.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 45566777888899999999999998653322 36778999999998765 57899999999999999888877766667
Q ss_pred hhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCC
Q 008745 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISY 165 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~ 165 (555)
..+...|+.+|...|....+...+.++++.... .+........+..++.++...||+..|++.++++..++...++
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMD----IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 888999999999999998888888999998754 2233456667788999999999999999999999999998888
Q ss_pred hhH-HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHH
Q 008745 166 PDL-QMFFATAILHVHLMQWDDENSVLRSINQCDRVW 201 (555)
Q Consensus 166 ~~~-~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~ 201 (555)
|.. .+++.++.++..+ .+++.......++..+.
T Consensus 258 ~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKA---GQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp GGHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH
Confidence 654 4555566555555 44555555555555443
No 30
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.36 E-value=3.7e-05 Score=65.24 Aligned_cols=157 Identities=12% Similarity=0.048 Sum_probs=118.7
Q ss_pred ChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhh
Q 008745 39 LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSS 118 (555)
Q Consensus 39 ~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~ 118 (555)
.|...+.+...+|.+++ .+.+.++|..+++++..+.+..+. ......+...++.+|...|....+...+.++++....
T Consensus 4 d~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGD-KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 46788999999998776 568999999999999887766432 3556678899999999999998888888999887654
Q ss_pred hhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHH
Q 008745 119 ASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCD 198 (555)
Q Consensus 119 ~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~ 198 (555)
.+.+.+.....+.++.++...||+..|++.++++..++.+.+++..........+.+++.. .+.+.....+.++.
T Consensus 82 ----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 82 ----LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL-GNHDQAMHFAEKHL 156 (164)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHH
T ss_pred ----hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHH
Confidence 2234566667788999999999999999999999999999988765544444444444432 45555555555555
Q ss_pred HHHH
Q 008745 199 RVWE 202 (555)
Q Consensus 199 ~l~~ 202 (555)
.+.+
T Consensus 157 ~~~~ 160 (164)
T 3ro3_A 157 EISR 160 (164)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5544
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.32 E-value=0.00028 Score=69.88 Aligned_cols=142 Identities=11% Similarity=0.014 Sum_probs=97.2
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
..++.+|..+...+++..|+.+++.+++..|. . +.+...+|.+++. ..+.++|...++++..+- |..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~--~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~---p~~---- 132 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPG---D--AEAWQFLGITQAE-NENEQAAIVALQRCLELQ---PNN---- 132 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---C--HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC---TTC----
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---C--HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcC---CCC----
Confidence 34788899999999999999999999987652 2 5567788887764 788999999999996542 222
Q ss_pred hhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHH
Q 008745 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA 160 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A 160 (555)
..+...|+.+|...|....+...+.++++..-.....+....-...+...++.++...|++..|++.+++.....
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 457889999999999998888888998886543221111000112344567888888999999999999876653
No 32
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.29 E-value=0.00013 Score=65.48 Aligned_cols=175 Identities=9% Similarity=0.067 Sum_probs=131.4
Q ss_pred hhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHH
Q 008745 17 NKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCY 96 (555)
Q Consensus 17 ~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y 96 (555)
..|++..|.+.++.+.. .|...+.+...+|.+++. ..+.++|..+++++..+.+..+. ......+...++.+|
T Consensus 4 ~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~ 76 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-----HPATASGARFMLGYVYAF-MDRFDEARASFQALQQQAQKSGD-HTAEHRALHQVGMVE 76 (203)
T ss_dssp ---CHHHHHHHHHHHHT-----STTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHH
Confidence 35677888886666643 345678888899887764 78999999999999988877643 355677889999999
Q ss_pred HHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHH
Q 008745 97 HLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAI 176 (555)
Q Consensus 97 ~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~ 176 (555)
...|....+...+.++++......+ .+.+.....+.++.++...||+..|...++.+..++...+++..........
T Consensus 77 ~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 77 RMAGNWDAARRCFLEERELLASLPE---DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCc---cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999998888888999998754110 2234455667899999999999999999999999999999988766655555
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHHH
Q 008745 177 LHVHLMQWDDENSVLRSINQCDRVWE 202 (555)
Q Consensus 177 ~~~~L~~~~~~~~v~~~l~~~~~l~~ 202 (555)
+.++... .+++.....+.++..+.+
T Consensus 154 a~~~~~~-g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 154 GDLAQQE-KNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 5555543 556666666677776665
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.28 E-value=0.00031 Score=67.25 Aligned_cols=136 Identities=15% Similarity=0.069 Sum_probs=92.5
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
..++.+|..+...+++..|+.+++.+++..| . .+.+...+|.+++ ...+.++|...++++..+ -|..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~---~~~~---- 88 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP---E--REEAWRSLGLTQA-ENEKDGLAIIALNHARML---DPKD---- 88 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T--CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---CTTC----
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---C--CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhc---CcCC----
Confidence 4567889999999999999999999998754 2 2345566777655 578999999999999654 2222
Q ss_pred hhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHH--------hHHH-HH-HhhhcCChHHHHHHHhh
Q 008745 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNF--------NSQL-AN-AFIIEGDYQSSISALQS 155 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f--------~fql-A~-~~~~~~D~~~A~~~L~~ 155 (555)
..+...++.+|...|....+...+.++++......+ .|.... ...+ +. ++...|++..|+..+++
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ-----LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTT-----C--------------------CCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH-----HHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 456788999999999988787778888875432111 111110 0011 22 46667788888888877
Q ss_pred HHHH
Q 008745 156 GYVC 159 (555)
Q Consensus 156 g~~~ 159 (555)
....
T Consensus 164 ~~~~ 167 (327)
T 3cv0_A 164 ALEM 167 (327)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5543
No 34
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.24 E-value=0.00018 Score=71.29 Aligned_cols=120 Identities=15% Similarity=0.060 Sum_probs=83.7
Q ss_pred HHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCC
Q 008745 23 KAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAI 102 (555)
Q Consensus 23 ~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~ 102 (555)
.++.+.+..+.+.+ -.|..++...+.+|..++. ..+.++|...++++..+ -|.. ..+...++.+|.+.|..
T Consensus 45 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~---~p~~----~~~~~~lg~~~~~~g~~ 115 (365)
T 4eqf_A 45 VTVSASEKGYYFHT-ENPFKDWPGAFEEGLKRLK-EGDLPVTILFMEAAILQ---DPGD----AEAWQFLGITQAENENE 115 (365)
T ss_dssp --------CCCCCS-SCTTTTCTTHHHHHHHHHH-HTCHHHHHHHHHHHHHH---CTTC----HHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHhhhccc-CCcccchhHHHHHHHHHHH-CCCHHHHHHHHHHHHHh---CcCC----HHHHHHHHHHHHHCCCH
Confidence 44566666666544 2455667778888888776 46899999999999643 2222 45788999999999998
Q ss_pred chHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHh
Q 008745 103 PPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCAT 161 (555)
Q Consensus 103 ~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~ 161 (555)
..+...+.++++..-. . ....+.++.++...||+..|+..+++......
T Consensus 116 ~~A~~~~~~al~~~p~-------~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 164 (365)
T 4eqf_A 116 QAAIVALQRCLELQPN-------N---LKALMALAVSYTNTSHQQDACEALKNWIKQNP 164 (365)
T ss_dssp HHHHHHHHHHHHHCTT-------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCCC-------C---HHHHHHHHHHHHccccHHHHHHHHHHHHHhCc
Confidence 8888888888875322 1 12345688999999999999999999776543
No 35
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.23 E-value=0.00011 Score=69.90 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=120.7
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCC---ChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCC-
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSF---LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIP- 79 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l---~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~- 79 (555)
.+..+..+|.-+...+++..|+.+++.+++...+. .+...+.+...+|.+++ ...+.++|..+++++..+.+.+.
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~ 146 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLG 146 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHHHHhcC
Confidence 45678889999999999999999999998752100 23456778888888765 47899999999999987765541
Q ss_pred cchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHH
Q 008745 80 SCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (555)
Q Consensus 80 ~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~ 159 (555)
.-......+...++++|...|....+...+.++++.......+ ...........++.++...|++..|++.++++...
T Consensus 147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP--DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT--TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1124456788899999999999988888889999876542111 13445566778999999999999999999999988
Q ss_pred Hhh
Q 008745 160 ATE 162 (555)
Q Consensus 160 A~~ 162 (555)
+.+
T Consensus 225 ~~~ 227 (311)
T 3nf1_A 225 AHE 227 (311)
T ss_dssp HHH
T ss_pred HHH
Confidence 755
No 36
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.23 E-value=0.00018 Score=68.42 Aligned_cols=192 Identities=10% Similarity=-0.071 Sum_probs=141.1
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCC---ChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCC
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSF---LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIP 79 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l---~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~ 79 (555)
..+..+..+|..+...+++..|+.+++.+++...+. .+...+.+...+|.+++. ..+.++|..+++++..+.+...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-QNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHh
Confidence 457789999999999999999999999999731100 235567788888987664 7899999999999987765541
Q ss_pred -cchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHH
Q 008745 80 -SCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYV 158 (555)
Q Consensus 80 -~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~ 158 (555)
.-......+...++.+|...|....+...+.++++....... +...+.....+.++.++...|++..|++.+++...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG--KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122456778899999999999998888888999887643211 12355666777899999999999999999999999
Q ss_pred HHhhh----CChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHH
Q 008745 159 CATEI----SYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRV 200 (555)
Q Consensus 159 ~A~~~----~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l 200 (555)
+..+. ......++..++.++..+- +++.....+.++..+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQG---KFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Confidence 88776 2234556666666666653 344444444444433
No 37
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.20 E-value=9.5e-05 Score=68.98 Aligned_cols=156 Identities=14% Similarity=0.061 Sum_probs=121.3
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCC---ChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCc
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSF---LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPS 80 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l---~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~ 80 (555)
.+..+..+|..+...+++..|+.+++.+++..... .+...+.+...+|.+++ ...+.++|...++++..+.+....
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHcC
Confidence 46778899999999999999999999999753100 23456788889998765 688999999999999887655422
Q ss_pred c-hhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHH
Q 008745 81 C-FELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (555)
Q Consensus 81 ~-~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~ 159 (555)
- ......+...|+.+|...|....+...+.++++....... +...-.....+.++.++...|++..|++.++.+..+
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG--PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 2456778999999999999998888888999987543211 112333455678899999999999999999999988
Q ss_pred Hhh
Q 008745 160 ATE 162 (555)
Q Consensus 160 A~~ 162 (555)
+..
T Consensus 199 ~~~ 201 (283)
T 3edt_B 199 AHE 201 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 755
No 38
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.19 E-value=0.0011 Score=63.60 Aligned_cols=120 Identities=9% Similarity=-0.041 Sum_probs=84.7
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 008745 353 LGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALV 432 (555)
Q Consensus 353 ~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~ 432 (555)
.....|.+++|.++++++++. .|. ....| -+++.+....++|++|.+.+.
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~----------~~~-------~~~~~-------------~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSI----------APE-------DPFVM-------------HEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT----------CTT-------CHHHH-------------HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh----------CCC-------ChHHH-------------HHHHHHHHHcccHHHHHHHHH
Confidence 334478899999988777654 222 01112 123556677899999999999
Q ss_pred HHHHHHHhccchhh-hhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCccc
Q 008745 433 QMKNWFIRFPTILQ-ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES 505 (555)
Q Consensus 433 q~~~~~~~~P~ll~-~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s 505 (555)
++.+.....+.... ...+.+.+.+|......|++++|...|..+++..++. ..+-.+++.+|...|+.+.
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~ 288 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN---ASTYSAIGYIHSLMGNFEN 288 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc---hHHHHHHHHHHHHhccHHH
Confidence 99988766543221 2335678889999999999999999999999876543 2344567788888787654
No 39
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.15 E-value=0.00086 Score=65.81 Aligned_cols=305 Identities=13% Similarity=0.048 Sum_probs=163.8
Q ss_pred HhhcCChHHHHH-HHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHh
Q 008745 55 LKHTHNVNHAKS-HLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFN 133 (555)
Q Consensus 55 ~e~T~N~~~Akt-hLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~ 133 (555)
+.+..+.+.|.. +++++.. -.+........+...++++|.+.|....+...+.++++..- .. ....
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-------~~---~~~~ 101 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQ---FEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-------KH---MEAW 101 (368)
T ss_dssp -----------CHHHHCCCC---CCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-------TC---HHHH
T ss_pred hHHHHHHHHHHhhhhhHHHh---cCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CC---HHHH
Confidence 445578888888 8877642 22333344566778899999999988877777788776422 11 2344
Q ss_pred HHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcCcccccccc
Q 008745 134 SQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCL 213 (555)
Q Consensus 134 fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~ 213 (555)
+.++.++...|++..|++.+++..... .....+++.++.++..+- +++.....+. ..++ +.+.....+.
T Consensus 102 ~~l~~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~g---~~~~A~~~~~---~~~~-~~~~~~~~~~ 170 (368)
T 1fch_A 102 QYLGTTQAENEQELLAISALRRCLELK----PDNQTALMALAVSFTNES---LQRQACEILR---DWLR-YTPAYAHLVT 170 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTT---CHHHHHHHHH---HHHH-TSTTTGGGCC
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcC---CHHHHHHHHH---HHHH-hCcCcHHHHH
Confidence 578999999999999999999877653 223556677777666553 3333333333 3333 1222111110
Q ss_pred chhhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHhhhhHHHHhhhcCCCCCChhHHHHHHHHHHHHHH
Q 008745 214 GLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQ 293 (555)
Q Consensus 214 g~~~~~e~l~vfy~lrvc~y~~a~~~v~~ld~~~~~~~q~~~~i~~l~~~L~~v~~~L~~~~~~~~~~~~~~~k~kqLQ~ 293 (555)
.. .+ + .+. ...+... ..+..+ + ...+...=...+++
T Consensus 171 ~~---~~---------~-----~~~--~~~~~~~--------------~~~~~~---~--------~~~~~~~A~~~~~~ 206 (368)
T 1fch_A 171 PA---EE---------G-----AGG--AGLGPSK--------------RILGSL---L--------SDSLFLEVKELFLA 206 (368)
T ss_dssp ------------------------------------------------CTTHHH---H--------HHHHHHHHHHHHHH
T ss_pred HH---HH---------H-----hhh--hcccHHH--------------HHHHHH---h--------hcccHHHHHHHHHH
Confidence 00 00 0 000 0000000 000000 0 00000000122222
Q ss_pred HHHhcccCCCCCcCcCCcccccCcccccCcccccCCCCCccccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 008745 294 RLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQT 373 (555)
Q Consensus 294 ~lq~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~ 373 (555)
.++. + |.+. .+-++..-+......|.+++|.++++++++.
T Consensus 207 a~~~--~--------------------p~~~------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 246 (368)
T 1fch_A 207 AVRL--D--------------------PTSI------------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246 (368)
T ss_dssp HHHH--S--------------------TTSC------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHh--C--------------------cCcc------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222 0 0000 0112222234445579999999999888765
Q ss_pred HHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHH
Q 008745 374 IQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIE 453 (555)
Q Consensus 374 i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~ 453 (555)
.|. ....| -+++.+....+++++|.+.+.++.+. .|.. +..+
T Consensus 247 ----------~~~-------~~~~~-------------~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~-----~~~~ 288 (368)
T 1fch_A 247 ----------RPN-------DYLLW-------------NKLGATLANGNQSEEAVAAYRRALEL---QPGY-----IRSR 288 (368)
T ss_dssp ----------CTT-------CHHHH-------------HHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-----HHHH
T ss_pred ----------CcC-------CHHHH-------------HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCc-----HHHH
Confidence 222 01122 12355667789999999998887765 4432 3567
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcCChh--------HHHHHHHHHHHHHhhcCCccc
Q 008745 454 MLRGQYAHSVGCYSEAAFHYVEAAKITESKS--------MQAMCHAYAAVSYFCIGDAES 505 (555)
Q Consensus 454 ~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~--------~~~~~~lnlAi~yL~~g~~~s 505 (555)
+.+|......|++++|...|..+++..++.. ...-+-.+++.+|...|+.+.
T Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 289 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 8899999999999999999999988764431 114455667888888888764
No 40
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.13 E-value=0.00017 Score=67.19 Aligned_cols=187 Identities=14% Similarity=0.090 Sum_probs=125.8
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008745 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (555)
Q Consensus 344 aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~ 423 (555)
+-++..-+......|.+++|.++++++++..+..+ | .+. . ....+ +-+++.+....++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~-~~~--------~--~~~~~--------~~~l~~~~~~~g~ 100 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL---G-KDH--------P--AVAAT--------LNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---C-TTC--------H--HHHHH--------HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc---C-Ccc--------h--HHHHH--------HHHHHHHHHHhcc
Confidence 34455556666778999999999999998854321 1 000 0 11122 2345777888999
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc-----CChhHHHHHHHHHHHHHh
Q 008745 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT-----ESKSMQAMCHAYAAVSYF 498 (555)
Q Consensus 424 ~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t-----~s~~~~~~~~lnlAi~yL 498 (555)
+++|.+.+.++.+.+.....--......+.+.+|.+....|++++|...|..+++.. .+.+....+..+++.+|.
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 180 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999998765211112346678889999999999999999999998873 224455667778899999
Q ss_pred hcCCccc----HHHHHHhhCccc-----ccccc-------------------------------ccchhHHHHHHHHHHH
Q 008745 499 CIGDAES----SSQAIDLIGPVY-----QMKDT-------------------------------INGVREEASLHFAYGL 538 (555)
Q Consensus 499 ~~g~~~s----~~~aL~li~P~~-----~~~~~-------------------------------~~~~~~ka~~~fv~gl 538 (555)
..|+.+. +.++++...+.. ..... ...-.+.+.+++.-|.
T Consensus 181 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 260 (283)
T 3edt_B 181 KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGA 260 (283)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9888653 556665422110 00000 0011235567888999
Q ss_pred HHHhhcChhhhhhh
Q 008745 539 LLMRQQDFQEARLA 552 (555)
Q Consensus 539 ~~~~q~~~~eAr~~ 552 (555)
....+|++++|...
T Consensus 261 ~~~~~g~~~~A~~~ 274 (283)
T 3edt_B 261 LYRRQGKLEAAHTL 274 (283)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHH
Confidence 99999999999764
No 41
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.01 E-value=0.0003 Score=68.82 Aligned_cols=156 Identities=9% Similarity=0.015 Sum_probs=127.2
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhccCCC-CChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVS-FLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~-l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
...+++......+++..|+.+++-+++...+ -.+..++.+...+|.+++ ...+.++|..++++|....+..+......
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence 3446777777777999999999999973221 134567888888887765 57799999999999998888887777888
Q ss_pred hhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcC-ChHHHHHHHhhHHHHHhhhC
Q 008745 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEG-DYQSSISALQSGYVCATEIS 164 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~-D~~~A~~~L~~g~~~A~~~~ 164 (555)
..+..-|+.+|.+.|....+...+.++++.+.. .....+.-.+.+.++.++...| +++.|++.++++..++...|
T Consensus 196 ~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~ 271 (293)
T 3u3w_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCR----INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 889999999999999998888888999998754 2234556678888999999988 67999999999999999999
Q ss_pred Chh
Q 008745 165 YPD 167 (555)
Q Consensus 165 ~~~ 167 (555)
++.
T Consensus 272 ~~~ 274 (293)
T 3u3w_A 272 MHA 274 (293)
T ss_dssp CTG
T ss_pred CHH
Confidence 864
No 42
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.01 E-value=0.00048 Score=67.71 Aligned_cols=174 Identities=13% Similarity=0.029 Sum_probs=118.0
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 008745 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 426 (555)
Q Consensus 347 yllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~ 426 (555)
|--.+...+..|.+++|..++++++.. ..+.|-.+ ..+..| .+++.+..-.|++++
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~------------~~a~~~--------~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADY----QKKAGNED------------EAGNTY--------VEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHH----HHHTTCHH------------HHHHHH--------HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHhCCHH------------HHHHHH--------HHHHHHHHHCCCHHH
Confidence 333345566789999999999999887 23332111 112233 455777778899999
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhcCCh---hHHHHHHHHHHHHHhhcCC
Q 008745 427 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-GCYSEAAFHYVEAAKITESK---SMQAMCHAYAAVSYFCIGD 502 (555)
Q Consensus 427 A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~-g~~~~A~~~F~~A~k~t~s~---~~~~~~~lnlAi~yL~~g~ 502 (555)
|...+.+..++....+... .....+.-+|...... |++++|..+|+.|++..+.. ....-+-.|++.+|+..|+
T Consensus 96 A~~~~~~Al~l~~~~g~~~--~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFR--RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 9999999999876664432 2355667788888885 99999999999999876432 2334556678999999888
Q ss_pred ccc----HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 503 AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 503 ~~s----~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
.+. +.++++ +.|.... ...+ .+.+++-.|.....+|++.+|...
T Consensus 174 ~~~A~~~~~~al~-~~~~~~~--~~~~---~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 174 YIEASDIYSKLIK-SSMGNRL--SQWS---LKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHHHHH-TTSSCTT--TGGG---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhcCCc--ccHH---HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 654 444444 2332111 0012 234678889999999999999764
No 43
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.00 E-value=0.0007 Score=64.45 Aligned_cols=184 Identities=9% Similarity=0.019 Sum_probs=129.3
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
-+..++.+|..+...+++..|+.+++.+++..| .....+.+++.+|.+++. ..+.++|...++++..+- |+. .
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~---p~~-~ 86 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR--THEWAADAQFYLARAYYQ-NKEYLLAASEYERFIQIY---QID-P 86 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS--CSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC---TTC-T
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCcchHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHC---CCC-c
Confidence 357889999999999999999999999999876 434456788899998765 689999999999986542 211 1
Q ss_pred hhhhHHHHHHHHHHH--------cCCCchHhHHHHHHHHHhhhhhcccccchhHHHHh--------------HHHHHHhh
Q 008745 84 LKCRTFSLLSQCYHL--------VGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFN--------------SQLANAFI 141 (555)
Q Consensus 84 lK~~a~sLLa~~y~~--------~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~--------------fqlA~~~~ 141 (555)
..-.+...++.+|.. .|....+...+.+.++. +|........+ +.++.++.
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-------YPNHELVDDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-------CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-------CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234678899999999 66666666666666654 22222222222 78899999
Q ss_pred hcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccC----chhHHHHHHHHHHHHHH
Q 008745 142 IEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWD----DENSVLRSINQCDRVWE 202 (555)
Q Consensus 142 ~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~----~~~~v~~~l~~~~~l~~ 202 (555)
..||+..|+..++......-. +....++++.++.++..+-... +....+.++.....+++
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPD-TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 999999999999996654321 2225678888888888774311 11444555555555555
No 44
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.99 E-value=0.00042 Score=68.58 Aligned_cols=184 Identities=9% Similarity=0.042 Sum_probs=132.4
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhccCCCC-ChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVSF-LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l-~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
.+-..+.-++..++...|+.|++-++...+++ .|...+.+...+|.+ +....+.++|..++++|..+.+..+.. +--
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~-~~~~g~~~~A~~~~~~Al~l~~~~g~~-~~~ 115 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMM-LKDLQRMPEAVQYIEKASVMYVENGTP-DTA 115 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCGGGGHHHHHHHHHHHHTTTCH-HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHcCCH-HHH
Confidence 33444667788889999999999888643322 355667777777765 456789999999999998887665443 233
Q ss_pred hhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCC
Q 008745 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISY 165 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~ 165 (555)
-.+..-|+.+|.. |....+...++++++..... + ...+....+..++.++...|++..|++.+++...+...+++
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--E--RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--T--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--C--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 4667789999998 87777777889999876531 1 23445566778999999999999999999999999999888
Q ss_pred hhHHHHHHHHHHHHHhcccCchhHHHHHHHHHH
Q 008745 166 PDLQMFFATAILHVHLMQWDDENSVLRSINQCD 198 (555)
Q Consensus 166 ~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~ 198 (555)
+.......+..+.+++.. .+++.......++.
T Consensus 191 ~~~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al 222 (307)
T 2ifu_A 191 YPTCYKKCIAQVLVQLHR-ADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHh
Confidence 665554555555565543 44554444444443
No 45
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.97 E-value=0.00038 Score=68.05 Aligned_cols=156 Identities=9% Similarity=0.021 Sum_probs=125.9
Q ss_pred HHHhHHHHHhhccHHHHHHHHHHhhccCC-CCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhh
Q 008745 8 LWGLADYHENKGEIGKAVKCLEAICQSHV-SFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (555)
Q Consensus 8 Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~-~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~ 86 (555)
...++......+++..|+.+++-+++..+ ...|..++.+...+|.+++. ..+.++|..++++|..+.+..+.-.++..
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-~~~~~~A~~~~~kal~~~~~~~~~~~~~~ 196 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE-NGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcCccccchH
Confidence 45577777788899999999998885322 12456678888888887765 88999999999999887777776556666
Q ss_pred hHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHH-HHHHhhHHHHHhhhCC
Q 008745 87 RTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSS-ISALQSGYVCATEISY 165 (555)
Q Consensus 87 ~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A-~~~L~~g~~~A~~~~~ 165 (555)
.+..-++.+|...|....+...+.++++.... .....+.....+.++.++...|++..| ...++++..++...++
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~----~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCR----INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 89999999999999998888888999998742 223344556778899999999999999 7779999999999998
Q ss_pred hhH
Q 008745 166 PDL 168 (555)
Q Consensus 166 ~~~ 168 (555)
+..
T Consensus 273 ~~~ 275 (293)
T 2qfc_A 273 HAY 275 (293)
T ss_dssp HHH
T ss_pred Hhh
Confidence 644
No 46
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.95 E-value=0.00033 Score=69.41 Aligned_cols=185 Identities=12% Similarity=-0.000 Sum_probs=121.3
Q ss_pred cccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 008745 334 GEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLEN 413 (555)
Q Consensus 334 f~WLPk~~l~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~ 413 (555)
|.|-|+.+--+-.|--.....+..|.+++|..+++++++. ..+.+-.+ ..+..| .+
T Consensus 26 ~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~------------~~a~~~--------~~ 81 (307)
T 2ifu_A 26 MKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEA----HANNRSLF------------HAAKAF--------EQ 81 (307)
T ss_dssp SSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHTTCHH------------HHHHHH--------HH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHcCCHH------------HHHHHH--------HH
Confidence 4566665554445555556677789999999999999887 23332111 111222 34
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC---hhHHHHHH
Q 008745 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCH 490 (555)
Q Consensus 414 ~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s---~~~~~~~~ 490 (555)
+..+..-.+++++|.+.+.+..++........ .....+.-+|.+... |++++|..+|+.|+...+. +.....+-
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~--~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 158 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPD--TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELI 158 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH--HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 45666677899999999999988876654321 233445556766667 9999999999999876643 33445667
Q ss_pred HHHHHHHhhcCCccc----HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 491 AYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 491 lnlAi~yL~~g~~~s----~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
.|++.+|...|+.+. +.+++++- |... ... ..+-+++..|+..+.+|++++|...
T Consensus 159 ~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~----~~~--~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 159 GKASRLLVRQQKFDEAAASLQKEKSMY-KEME----NYP--TCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTT----CHH--HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcC----Chh--HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 778999988888543 45555432 2111 111 2445788888999999999998754
No 47
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.94 E-value=0.0019 Score=63.00 Aligned_cols=190 Identities=7% Similarity=0.044 Sum_probs=134.0
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHH--HHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIE--VKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~E--A~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~ 82 (555)
...+...++.+-..+++..|+.+++.+++..+ ..|... +....-+|.+. ....|.++|..++++|..+....+..
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~-~~~~~~~~Ai~~~~~al~~~~~~~~~- 151 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYV-LKKVDYEYCILELKKLLNQQLTGIDV- 151 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHTCCCCSCT-
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHhcccccH-
Confidence 44555667888888999999999999998654 345544 22333355543 34568999999999997754443332
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhh
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~ 162 (555)
.....+...|+.+|...|....+.....++++...... ....-....++-++.++...||+..|+..++++..++..
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH---DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 23455788999999999999888888899998664311 123344567788999999999999999999999999999
Q ss_pred hCChhH--HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHH
Q 008745 163 ISYPDL--QMFFATAILHVHLMQWDDENSVLRSINQCDRVWE 202 (555)
Q Consensus 163 ~~~~~~--~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~ 202 (555)
.++... .+++.++.++..+- .+.+.......++..+.+
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g--~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLE--YEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHH
Confidence 888664 45555555555542 233555555566666655
No 48
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.94 E-value=0.0014 Score=63.88 Aligned_cols=190 Identities=7% Similarity=0.032 Sum_probs=131.5
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhH--HHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPII--EVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~--EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~ 82 (555)
...+...++.+...+++..|+.+++.+++..+. .+.. .+.....+|.+ +....+.++|..++++|..+...... .
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~~~~~~-~ 151 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAY-VLKKVDYEYCILELKKLLNQQLTGID-V 151 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHH-HHTSSCHHHHHHHHHHHHTTCCCSSC-T
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcCCc-h
Confidence 345667788888889999999999988876542 3333 33444444443 44566999999999999654333222 2
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhh
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~ 162 (555)
.....+...++.+|...|....+...+.|+++........ ..-.....+.++.++...|+++.|+..++++..++..
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~---~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN---EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc---ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 2357789999999999999988888889999876542111 1112256678999999999999999999999999987
Q ss_pred hCChhH--HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHH
Q 008745 163 ISYPDL--QMFFATAILHVHLMQWDDENSVLRSINQCDRVWE 202 (555)
Q Consensus 163 ~~~~~~--~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~ 202 (555)
.+++.. .+++.++.+...+- +...++.....++..+.+
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g--~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLE--YEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHH
Confidence 777654 45555666555553 222333555666666665
No 49
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.80 E-value=0.018 Score=54.80 Aligned_cols=117 Identities=10% Similarity=0.061 Sum_probs=81.4
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008745 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (555)
Q Consensus 351 vi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~ 430 (555)
+......|.+++|.++++++++. .|. ....| -+++.+....+++++|.+.
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~----------~~~-------~~~~~-------------~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL----------RPD-------DAQLW-------------NKLGATLANGNRPQEALDA 228 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----------CTT-------CHHHH-------------HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh----------CCC-------cHHHH-------------HHHHHHHHHcCCHHHHHHH
Confidence 33445578999999999888764 121 01122 1235556678999999998
Q ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh---------hHHHHHHHHHHHHHhhcC
Q 008745 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---------SMQAMCHAYAAVSYFCIG 501 (555)
Q Consensus 431 l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~---------~~~~~~~lnlAi~yL~~g 501 (555)
+.++.+. .|.. +...+.+|......|++++|...|..+++..++. .....+-.+++.+|...|
T Consensus 229 ~~~a~~~---~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 229 YNRALDI---NPGY-----VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHc---CCCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 8877664 3432 3456788999999999999999999999877652 113455566888888877
Q ss_pred Cccc
Q 008745 502 DAES 505 (555)
Q Consensus 502 ~~~s 505 (555)
+.+.
T Consensus 301 ~~~~ 304 (327)
T 3cv0_A 301 RPDL 304 (327)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7543
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.77 E-value=0.001 Score=59.36 Aligned_cols=154 Identities=13% Similarity=0.011 Sum_probs=108.4
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 008745 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (555)
Q Consensus 345 Lvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~ 424 (555)
-+|+--+.+.+.+|.+++|.++++++++. .|+ +...| .+++.+..-.+++
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~----------~p~-------~~~~~-------------~~la~~~~~~~~~ 55 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKA----------DPN-------NVETL-------------LKLGKTYMDIGLP 55 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTT-------CHHHH-------------HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCC-------CHHHH-------------HHHHHHHHHCCCH
Confidence 35666677778899999999999999875 232 01122 1235556678999
Q ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcc
Q 008745 425 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 504 (555)
Q Consensus 425 ~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~ 504 (555)
+.|.+.+..+... .|.. +...+..|.+....|+++.|...|..+++..++.. -+..+++.+|...|+.+
T Consensus 56 ~~a~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~---~~~~~lg~~~~~~g~~~ 124 (184)
T 3vtx_A 56 NDAIESLKKFVVL---DTTS-----AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYA---DAYYKLGLVYDSMGEHD 124 (184)
T ss_dssp HHHHHHHHHHHHH---CCCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhc---Cchh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch---HHHHHHHHHHHHhCCch
Confidence 9998887766543 3432 34567889999999999999999999988765443 23445778888888854
Q ss_pred c----HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 505 S----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 505 s----~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
. +.++++ ++|. .+-+++-.|...+.+|+++||...
T Consensus 125 ~A~~~~~~~l~-~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 125 KAIEAYEKTIS-IKPG------------FIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HHHHHHHHHHH-HCTT------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHH-hcch------------hhhHHHHHHHHHHHCCCHHHHHHH
Confidence 3 455554 3553 134578889999999999999754
No 51
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.003 Score=58.09 Aligned_cols=181 Identities=12% Similarity=0.112 Sum_probs=128.6
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~ 82 (555)
+-+..+..+|..+...+++..|+.+++.+++... . +.+...+|.+++ ...+.++|...++++..+....+.-.
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~--~----~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHK--D----ITYLNNRAAAEY-EKGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC--C----THHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhc--c----HHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCcccccch
Confidence 3467889999999999999999999999998652 2 346677787754 57799999999999987655543334
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhh---------------h-cccccchhHHHHhHHHHHHhhhcCCh
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSA---------------S-QDVAVKLWSCNFNSQLANAFIIEGDY 146 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~---------------~-e~~~~~~W~~~f~fqlA~~~~~~~D~ 146 (555)
.....+...++.+|...|....+...+.++++..... . +......-.....+.++.++...|++
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 4557899999999999999988888888888842110 0 00001112224456788999999999
Q ss_pred HHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 008745 147 QSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQC 197 (555)
Q Consensus 147 ~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~ 197 (555)
..|+..+++....... ...+++.++.++..+ .++++......++
T Consensus 156 ~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~---~~~~~A~~~~~~a 199 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPE----DARGYSNRAAALAKL---MSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHh---CCHHHHHHHHHHH
Confidence 9999999997765422 346677777777665 3344444444444
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.73 E-value=0.0029 Score=56.44 Aligned_cols=153 Identities=12% Similarity=0.148 Sum_probs=113.4
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~ 82 (555)
+.+.....|++.++..|++..|+.|++.+++..|.- +.+...+|.+++ ...+.++|...++++... .+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~---~~~~- 72 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-----VETLLKLGKTYM-DIGLPNDAIESLKKFVVL---DTTS- 72 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---CCCC-
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhc---Cchh-
Confidence 344556788999999999999999999999887632 345677787765 578899999999988543 2232
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhh
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~ 162 (555)
..+...++.++...+....+...+.++++..-. . ....+.++.++...|++..|++.+++.....
T Consensus 73 ---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-------~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-- 137 (184)
T 3vtx_A 73 ---AEAYYILGSANFMIDEKQAAIDALQRAIALNTV-------Y---ADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-- 137 (184)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-------c---hHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--
Confidence 346678899999999887777777777764322 1 1234568999999999999999999977653
Q ss_pred hCChhHHHHHHHHHHHHHhc
Q 008745 163 ISYPDLQMFFATAILHVHLM 182 (555)
Q Consensus 163 ~~~~~~~v~fals~~~~~L~ 182 (555)
.....+++.++.++..+-
T Consensus 138 --p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 138 --PGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp --TTCHHHHHHHHHHHHHTT
T ss_pred --chhhhHHHHHHHHHHHCC
Confidence 334567788887777664
No 53
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.0025 Score=58.66 Aligned_cols=177 Identities=12% Similarity=0.054 Sum_probs=125.6
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCC--hhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcC-----
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFL--PIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAI----- 78 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~--P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i----- 78 (555)
..+..+|.-+...+++..|+.+++.+++..+... ....+.+...+|.+++ ...+.++|..+++++..+....
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~ 117 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTADILTK 117 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCchhHHHHH
Confidence 4677889999999999999999999997544332 2234788899998876 5789999999999997632110
Q ss_pred --------------CcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcC
Q 008745 79 --------------PSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEG 144 (555)
Q Consensus 79 --------------~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~ 144 (555)
-....-...+...++.+|...|....+...+.++++..-. . ....+.++.++...|
T Consensus 118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-------~---~~~~~~l~~~~~~~~ 187 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-------D---ARGYSNRAAALAKLM 187 (258)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------C---HHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-------c---HHHHHHHHHHHHHhC
Confidence 0022334567889999999999988787788888875422 1 134567899999999
Q ss_pred ChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHH
Q 008745 145 DYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRV 200 (555)
Q Consensus 145 D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l 200 (555)
++..|+..++.+.... .....+++.++.++..+- +.+.....+.++.++
T Consensus 188 ~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 188 SFPEAIADCNKAIEKD----PNFVRAYIRKATAQIAVK---EYASALETLDAARTK 236 (258)
T ss_dssp CHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHh
Confidence 9999999999977653 223566777777776663 344443444444433
No 54
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.70 E-value=0.00096 Score=62.59 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=112.8
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
-+.++..++..+...+++..|+.+++.+++..|. . +.+...+|.+++. ..+.++|...++++..+ -|..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~--~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~---~P~~-- 72 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ---D--PEALYWLARTQLK-LGLVNPALENGKTLVAR---TPRY-- 72 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---C--HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH---CTTC--
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C--HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh---CCCc--
Confidence 3457788999999999999999999999987652 2 3456777877654 78899999999999654 2333
Q ss_pred hhhhHHHHHHHHHHHc-----------CCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHH
Q 008745 84 LKCRTFSLLSQCYHLV-----------GAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISA 152 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~-----------~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~ 152 (555)
..++..|+.+|... |....+...++++++..-. . -...+.++.++...|++..|+..
T Consensus 73 --~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-------~---~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 73 --LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-------Y---APLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp --HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-------C---HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-------c---HHHHHHHHHHHHHcCChHHHHHH
Confidence 34677889999998 8776666677777775321 1 12335789999999999999999
Q ss_pred HhhHHHHHhhhCChhHHHHHHHHHHHHHhc
Q 008745 153 LQSGYVCATEISYPDLQMFFATAILHVHLM 182 (555)
Q Consensus 153 L~~g~~~A~~~~~~~~~v~fals~~~~~L~ 182 (555)
+++..++. ++ ..+.+.++.++..+-
T Consensus 141 ~~~al~~~---~~--~~~~~~la~~~~~~g 165 (217)
T 2pl2_A 141 LKQALALE---DT--PEIRSALAELYLSMG 165 (217)
T ss_dssp HHHHHHHC---CC--HHHHHHHHHHHHHHT
T ss_pred HHHHHhcc---cc--hHHHHHHHHHHHHcC
Confidence 99987776 33 455667777766663
No 55
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.68 E-value=0.004 Score=53.93 Aligned_cols=166 Identities=17% Similarity=0.149 Sum_probs=119.4
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~ 82 (555)
..+..+..+|..+...+++..|+.+++.+++..+. . +.+...+|.+++ ...+.++|...++++..+ -|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~--~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~---~~~~- 75 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF---D--VDVALHLGIAYV-KTGAVDRGTELLERSLAD---APDN- 75 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC---C--HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---CTTC-
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---C--hHHHHHHHHHHH-HcCCHHHHHHHHHHHHhc---CCCC-
Confidence 34567788999999999999999999999987551 1 456777787765 578999999999998654 2222
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhh
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~ 162 (555)
..+...++.+|...|....+...+.++++.... .....+.++.++...||+..|++.++......
T Consensus 76 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 140 (186)
T 3as5_A 76 ---VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI----------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-- 140 (186)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH----------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--
Confidence 346778999999999888777777887775321 11344678888999999999999999977653
Q ss_pred hCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHH
Q 008745 163 ISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCD 198 (555)
Q Consensus 163 ~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~ 198 (555)
.....+++.++.+...+ .+.+.......++.
T Consensus 141 --~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 141 --PNEGKVHRAIAFSYEQM---GRHEEALPHFKKAN 171 (186)
T ss_dssp --TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred --ccchHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Confidence 22346667777776665 33444444444433
No 56
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.67 E-value=0.0042 Score=60.88 Aligned_cols=182 Identities=10% Similarity=-0.039 Sum_probs=128.7
Q ss_pred HHHhHHHHHhhccHHHHHHHHHHhhccCCCC-ChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhh
Q 008745 8 LWGLADYHENKGEIGKAVKCLEAICQSHVSF-LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (555)
Q Consensus 8 Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l-~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~ 86 (555)
+-..+.-++..+++..|+.|++-++...+++ .|.-.|.+...+|.++ ....+.++|..++++|..+....+... --.
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~-~~~g~~~~A~~~~~~Al~l~~~~g~~~-~~a 117 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCF-KSGGNSVNAVDSLENAIQIFTHRGQFR-RGA 117 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHH-HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHcCCHH-HHH
Confidence 3344566777889999999999888643222 3556788888888875 456799999999999988776654432 234
Q ss_pred hHHHHHHHHHHHc-CCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCC
Q 008745 87 RTFSLLSQCYHLV-GAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISY 165 (555)
Q Consensus 87 ~a~sLLa~~y~~~-~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~ 165 (555)
.+..-|+.+|... |....+....+++++..... ....+....+..++.++...|++..|+..++........++.
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQD----QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC----CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 5677899999996 98877777789999876431 123344556678899999999999999999998887766655
Q ss_pred hh---HHHHHHHHHHHHHhcccCchhHHHHHHHHHH
Q 008745 166 PD---LQMFFATAILHVHLMQWDDENSVLRSINQCD 198 (555)
Q Consensus 166 ~~---~~v~fals~~~~~L~~~~~~~~v~~~l~~~~ 198 (555)
.. ...++.+..++..+ .++++......++.
T Consensus 194 ~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al 226 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLAA---TDAVAAARTLQEGQ 226 (292)
T ss_dssp TGGGHHHHHHHHHHHHHHT---TCHHHHHHHHHGGG
T ss_pred ccHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Confidence 32 23455666666555 44555544444443
No 57
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.65 E-value=0.0029 Score=62.02 Aligned_cols=133 Identities=10% Similarity=0.021 Sum_probs=81.8
Q ss_pred HHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhccc
Q 008745 44 VKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDV 123 (555)
Q Consensus 44 A~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~ 123 (555)
+.+...+|.+++. ..+.++|..+++++..+ -|.. ..+...++.+|...|....+...+.++++..-.
T Consensus 217 ~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----- 283 (368)
T 1fch_A 217 PDVQCGLGVLFNL-SGEYDKAVDCFTAALSV---RPND----YLLWNKLGATLANGNQSEEAVAAYRRALELQPG----- 283 (368)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH---CTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh---CcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Confidence 4555666666543 56777777777777543 1221 345667778888877776666666776664321
Q ss_pred ccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChh-------HHHHHHHHHHHHHhcccCchhHHHHHHHH
Q 008745 124 AVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPD-------LQMFFATAILHVHLMQWDDENSVLRSINQ 196 (555)
Q Consensus 124 ~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~-------~~v~fals~~~~~L~~~~~~~~v~~~l~~ 196 (555)
. ....+.++.++...|++..|+..+++...+....++|. ..+...++.++..+-+ ++.......+
T Consensus 284 --~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 355 (368)
T 1fch_A 284 --Y---IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ---SDAYGAADAR 355 (368)
T ss_dssp --C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC---GGGHHHHHTT
T ss_pred --c---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC---hHhHHHhHHH
Confidence 1 12345677788888888888888888887776664432 5667777777777744 3444444333
Q ss_pred H
Q 008745 197 C 197 (555)
Q Consensus 197 ~ 197 (555)
+
T Consensus 356 ~ 356 (368)
T 1fch_A 356 D 356 (368)
T ss_dssp C
T ss_pred H
Confidence 3
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.63 E-value=0.0057 Score=55.99 Aligned_cols=150 Identities=12% Similarity=0.074 Sum_probs=88.4
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
...+..+|..+...+++..|+.+++.+++..+. .+.+...+|.+++ ...+.++|...++++..+. +..
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~---~~~--- 124 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSS-----AATAYYGAGNVYV-VKEMYKEAKDMFEKALRAG---MEN--- 124 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT---CCS---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-----chHHHHHHHHHHH-HhccHHHHHHHHHHHHHhC---CCC---
Confidence 345566677777777777777777777765431 1344555665554 3566777777777764432 111
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhC
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~ 164 (555)
..+...++.+|...|....+...+.++++....+ ....+.++.++...|++..|+..++......
T Consensus 125 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---- 189 (243)
T 2q7f_A 125 -GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND----------TEARFQFGMCLANEGMLDEALSQFAAVTEQD---- 189 (243)
T ss_dssp -HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 2345667777777777666666666666543210 1233456677777777777777777655442
Q ss_pred ChhHHHHHHHHHHHHHh
Q 008745 165 YPDLQMFFATAILHVHL 181 (555)
Q Consensus 165 ~~~~~v~fals~~~~~L 181 (555)
.....+++.++.++..+
T Consensus 190 ~~~~~~~~~la~~~~~~ 206 (243)
T 2q7f_A 190 PGHADAFYNAGVTYAYK 206 (243)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHc
Confidence 12234555666665554
No 59
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.62 E-value=0.0043 Score=57.63 Aligned_cols=152 Identities=7% Similarity=-0.055 Sum_probs=92.2
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+..+..+|..+...+++..|+.+++.+++..+ .. +.+...+|.+++. ..+.++|...++++..+. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~--~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~---~~---- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP---SS--ADAHAALAVVFQT-EMEPKLADEEYRKALASD---SR---- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT---TC--HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC---TT----
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---Ch--HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHC---cC----
Confidence 56677778888888888888888888877644 11 3456666666543 667788888887775431 21
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhC
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~ 164 (555)
...+...++.+|...|....+...+.++++ .. .........+.++.++...|++..|+..+++......
T Consensus 104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--- 172 (252)
T 2ho1_A 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQ--DT------LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR--- 172 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--CT------TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh--Cc------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---
Confidence 134566777777777777666666666655 00 1112223344566667777777777777776554431
Q ss_pred ChhHHHHHHHHHHHHHh
Q 008745 165 YPDLQMFFATAILHVHL 181 (555)
Q Consensus 165 ~~~~~v~fals~~~~~L 181 (555)
....+++.++.++..+
T Consensus 173 -~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 173 -NQPSVALEMADLLYKE 188 (252)
T ss_dssp -CCHHHHHHHHHHHHHT
T ss_pred -ccHHHHHHHHHHHHHc
Confidence 1234445555554443
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.61 E-value=0.0056 Score=55.03 Aligned_cols=154 Identities=11% Similarity=-0.046 Sum_probs=112.8
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
-+..+..+|..+...+++..|+++++.+++..+. . +.+...+|.+++ ...+.++|..+++++..+. |..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~--~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~---~~~-- 75 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---N--ELAWLVRAEIYQ-YLKVNDKAQESFRQALSIK---PDS-- 75 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C--HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC---TTC--
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---c--hHHHHHHHHHHH-HcCChHHHHHHHHHHHHhC---CCC--
Confidence 4567888999999999999999999999987551 2 346677777765 5788999999999996542 222
Q ss_pred hhhhHHHHHHHHHHHc-CCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhh
Q 008745 84 LKCRTFSLLSQCYHLV-GAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~-~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~ 162 (555)
..+...++.+|... |....+...+.++++ .. ..+ -.....+.++.++...|++..|+..++.+.....
T Consensus 76 --~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~----~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 144 (225)
T 2vq2_A 76 --AEINNNYGWFLCGRLNRPAESMAYFDKALA-DP----TYP---TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP- 144 (225)
T ss_dssp --HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-ST----TCS---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred --hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-Cc----CCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 34677899999999 988777777777776 11 111 1223446788899999999999999998776532
Q ss_pred hCChhHHHHHHHHHHHHHhc
Q 008745 163 ISYPDLQMFFATAILHVHLM 182 (555)
Q Consensus 163 ~~~~~~~v~fals~~~~~L~ 182 (555)
....+.+.++.++..+-
T Consensus 145 ---~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 145 ---QFPPAFKELARTKMLAG 161 (225)
T ss_dssp ---TCHHHHHHHHHHHHHHT
T ss_pred ---CCchHHHHHHHHHHHcC
Confidence 22566777777776663
No 61
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.59 E-value=0.0055 Score=57.44 Aligned_cols=134 Identities=13% Similarity=0.116 Sum_probs=80.7
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
+.++..|+.+...+++..|+.+++.+++..|.-+ .+...+|. .+....+.++|...++++.. .+ +. .+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~-~~~~~~~~~~A~~~~~~a~~--~~-~~-~~~~ 73 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP-----YIYNRRAV-CYYELAKYDLAQKDIETYFS--KV-NA-TKAK 73 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS-----TTHHHHHH-HHHHTTCHHHHHHHHHHHHT--TS-CT-TTCC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-----HHHHHHHH-HHHHHhhHHHHHHHHHHHHh--cc-Cc-hhHH
Confidence 3466677777777777777777777776554211 24555666 44556777777777777754 22 11 1334
Q ss_pred hhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHH
Q 008745 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~ 159 (555)
..+...++.+|...|....+...+.++++..-.. . ...+.++.++...||+..|++.+++....
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-------~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR-------L---DMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------T---HHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------H---HHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 5556777777777777766666666666643211 1 22345666666667777777666665443
No 62
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.58 E-value=0.0013 Score=61.70 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=94.1
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHH--HHHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 008745 349 MVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIW--MAGVYLMLLMQFLENKVAVELTRSGFVE 426 (555)
Q Consensus 349 lsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w--~~~~yl~L~~~lLE~~v~~~lt~~~~~~ 426 (555)
.-+.+....|.+++|.++++++++. .|. . ...| .+.+|...... ..-..+..+++++
T Consensus 44 ~lg~~~~~~g~~~~A~~~~~~al~~----------~P~-----~--~~a~~~lg~~~~~~~~~----~~~~~~~~g~~~~ 102 (217)
T 2pl2_A 44 WLARTQLKLGLVNPALENGKTLVAR----------TPR-----Y--LGGYMVLSEAYVALYRQ----AEDRERGKGYLEQ 102 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----------CTT-----C--HHHHHHHHHHHHHHHHT----CSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----------CCC-----c--HHHHHHHHHHHHHhhhh----hhhhcccccCHHH
Confidence 3344555689999999999888775 232 0 1112 11122100000 0001122389999
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCccc-
Q 008745 427 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES- 505 (555)
Q Consensus 427 A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s- 505 (555)
|.+.+....+. .|.- +..++.+|......|++++|...|..|+++.+++ -+..|++.+|...|+.+.
T Consensus 103 A~~~~~~al~~---~P~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~la~~~~~~g~~~~A 170 (217)
T 2pl2_A 103 ALSVLKDAERV---NPRY-----APLHLQRGLVYALLGERDKAEASLKQALALEDTP----EIRSALAELYLSMGRLDEA 170 (217)
T ss_dssp HHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHh---Cccc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch----HHHHHHHHHHHHcCCHHHH
Confidence 98887666554 5653 3566889999999999999999999999887222 334678889988888543
Q ss_pred ---HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 506 ---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 506 ---~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
+.++++ +.|. + .-+++..|...+.+|+++||...
T Consensus 171 ~~~~~~al~-~~P~------~------~~~~~~la~~~~~~g~~~~A~~~ 207 (217)
T 2pl2_A 171 LAQYAKALE-QAPK------D------LDLRVRYASALLLKGKAEEAARA 207 (217)
T ss_dssp HHHHHHHHH-HSTT------C------HHHHHHHHHHHTC----------
T ss_pred HHHHHHHHH-hCCC------C------hHHHHHHHHHHHHccCHHHHHHH
Confidence 556665 3552 1 23467788999999999999764
No 63
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.57 E-value=0.0024 Score=55.09 Aligned_cols=142 Identities=12% Similarity=0.014 Sum_probs=107.5
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~ 82 (555)
..+..+..+|..+...+++..|+.+++.+++..+. .+.+...+|.+++ ...+.++|...++++..+. |..
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~---~~~- 80 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-----NAIYYGNRSLAYL-RTECYGYALGDATRAIELD---KKY- 80 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC---TTC-
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC---ccc-
Confidence 35678899999999999999999999999987551 1556777887764 5789999999999996542 222
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhh
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~ 162 (555)
..+...++.+|...|....+...+.++++..-. .....+.+.++..+...|++..|++..+....+...
T Consensus 81 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 81 ---IKGYYRRAASNMALGKFRAALRDYETVVKVKPH--------DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 357789999999999998888888888876432 122234456666677789999999999887776655
Q ss_pred hCC
Q 008745 163 ISY 165 (555)
Q Consensus 163 ~~~ 165 (555)
.+.
T Consensus 150 ~~~ 152 (166)
T 1a17_A 150 LDI 152 (166)
T ss_dssp CCC
T ss_pred cch
Confidence 443
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.56 E-value=0.0035 Score=58.00 Aligned_cols=157 Identities=6% Similarity=-0.042 Sum_probs=114.3
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
..++.++..+...+++..|+.+++.+++..+ ++..++ ...+|.+++ ...+.++|..+++++..+ -|. -
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~--~~~~~~~~~-~~~~~~~A~~~~~~al~~---~p~----~ 75 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN--NQDSVT--AYNCGVCAD-NIKKYKEAADYFDIAIKK---NYN----L 75 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCCHHH--HHHHHHHHH-HTTCHHHHHHHHHHHHHT---TCS----H
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccC--CCCcHH--HHHHHHHHH-HhhcHHHHHHHHHHHHHh---Ccc----h
Confidence 6788899999999999999999999998765 455544 444666654 678999999999999532 233 3
Q ss_pred hhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCC
Q 008745 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISY 165 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~ 165 (555)
..+...++.+|...|....+...++++++..-.+..- ..-.....+.++.++...|++..|++.+++.... +.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p 148 (228)
T 4i17_A 76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI---EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----TS 148 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----SC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH---HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----CC
Confidence 4567889999999999988888888888864321100 0001134567888999999999999999987654 23
Q ss_pred h--hHHHHHHHHHHHHHh
Q 008745 166 P--DLQMFFATAILHVHL 181 (555)
Q Consensus 166 ~--~~~v~fals~~~~~L 181 (555)
. ...+++.++.++..+
T Consensus 149 ~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 149 KKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHH
Confidence 3 356666666666544
No 65
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.54 E-value=0.0037 Score=58.02 Aligned_cols=133 Identities=14% Similarity=0.064 Sum_probs=79.2
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
..++..+|.-+...+++..|+.+++.+++..+. .+.+...+|.+++. ..+.++|...++++.. . ....-
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~----~-~~~~~ 139 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSR-----NARVLNNYGGFLYE-QKRYEEAYQRLLEASQ----D-TLYPE 139 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHH-TTCHHHHHHHHHHHTT----C-TTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----cHHHHHHHHHHHHH-HhHHHHHHHHHHHHHh----C-ccCcc
Confidence 345666777777777777777777777765431 13445566666543 6677777777776632 1 11122
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHH
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYV 158 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~ 158 (555)
...+...++.+|...|....+...+.++++..-. . ....+.++.++...||+..|+..++.+..
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-------Q---PSVALEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-------c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666777777777666666666666554211 1 12335666777777777777777776543
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.54 E-value=0.0035 Score=71.08 Aligned_cols=156 Identities=15% Similarity=0.220 Sum_probs=123.1
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
-++++..||.-+...|++..|+.|++.+++..|.. +.++..+|.+|+ ...+.++|..++++|..+ -|.+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~-----~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l---~P~~-- 76 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-----AAAHSNLASVLQ-QQGKLQEALMHYKEAIRI---SPTF-- 76 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-----HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---CTTC--
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh---CCCC--
Confidence 46789999999999999999999999999887632 456778888775 468899999999999654 2333
Q ss_pred hhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhh
Q 008745 84 LKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEI 163 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~ 163 (555)
..++..|+.+|...|....+...++|+|+.--.. ..-.+.++.++...|+++.|+..+++..++.
T Consensus 77 --~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~----------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--- 141 (723)
T 4gyw_A 77 --ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF----------ADAHSNLASIHKDSGNIPEAIASYRTALKLK--- 141 (723)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 4578899999999999988888889998864221 1223568999999999999999999977653
Q ss_pred CChhHHHHHHHHHHHHHhcccCc
Q 008745 164 SYPDLQMFFATAILHVHLMQWDD 186 (555)
Q Consensus 164 ~~~~~~v~fals~~~~~L~~~~~ 186 (555)
.....+++.++.++..+.+|++
T Consensus 142 -P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 142 -PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp -SCCHHHHHHHHHHHHHTTCCTT
T ss_pred -CCChHHHhhhhhHHHhcccHHH
Confidence 3345677888888888877655
No 67
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.021 Score=57.62 Aligned_cols=191 Identities=10% Similarity=-0.006 Sum_probs=139.7
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCC-hhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFL-PIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~-P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
..+|..|++-+...|++..|+.+++-+++...++. +..++.++--++ .+....++.+.|...++++....+.++. .-
T Consensus 55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 132 (434)
T 4b4t_Q 55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIE-KFEQVPDSLDDQIFVCEKSIEFAKREKR-VF 132 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHH-HHCSCCSCHHHHHHHHHHHHHHHHHSSC-CS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHhCc-cH
Confidence 45789999999999999999999999998765554 334555554444 4556678999999999999887776643 34
Q ss_pred hhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhh
Q 008745 84 LKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEI 163 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~ 163 (555)
++.....-||++|...|....+...+.+.+..... .........+.+.++.++...||+..|...+++...++...
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK----LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT----SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh----cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 57888999999999999998887777877766543 22234455677888999999999999999999999999888
Q ss_pred CCh-hHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHH
Q 008745 164 SYP-DLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWE 202 (555)
Q Consensus 164 ~~~-~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~ 202 (555)
++| .+...+....+.++..+ .+++....-...+....+
T Consensus 209 ~~~~~~~~~~~~~~g~~~~~~-~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 209 YCPTQTVAELDLMSGILHCED-KDYKTAFSYFFESFESYH 247 (434)
T ss_dssp CCCHHHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhh
Confidence 775 44444545555555544 555555444444444443
No 68
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.41 E-value=0.021 Score=53.39 Aligned_cols=169 Identities=9% Similarity=0.033 Sum_probs=113.2
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+..+..+|..+-..+++..|+.+++.+++..| ....-..+.+.+|.+++ ...+.++|...++++..+ -|+...
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~---~P~~~~- 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP--FGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRL---NPTHPN- 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---CTTCTT-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH---CcCCCc-
Confidence 45788899999999999999999999998765 33334567888897776 478999999999998543 233222
Q ss_pred hhhHHHHHHHHHHHcCCCc------------hHhHHHHHHHHHhhhhhcccccchhHH--HH------------hHHHHH
Q 008745 85 KCRTFSLLSQCYHLVGAIP------------PQKLILYKALDLTSSASQDVAVKLWSC--NF------------NSQLAN 138 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~------------~~k~~L~k~i~~s~~~~e~~~~~~W~~--~f------------~fqlA~ 138 (555)
--.+...++.+|...|+.. ... -..+|++.-....+.+|...+.. .. .+.++.
T Consensus 77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~ 155 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQ-QARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAE 155 (225)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCH-HHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcH-HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1246778888888743110 001 12445444444444455443322 11 156778
Q ss_pred HhhhcCChHHHHHHHhhHHHHHhhhCCh-hHHHHHHHHHHHHHhcc
Q 008745 139 AFIIEGDYQSSISALQSGYVCATEISYP-DLQMFFATAILHVHLMQ 183 (555)
Q Consensus 139 ~~~~~~D~~~A~~~L~~g~~~A~~~~~~-~~~v~fals~~~~~L~~ 183 (555)
++...|++..|+..++......- +++ .-++++.++.++..+-+
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYP--DTQATRDALPLMENAYRQMQM 199 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHST--TSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCcHHHHHHHHHHHHHHCc--CCCccHHHHHHHHHHHHHcCC
Confidence 88889999999999998665432 233 34788888888888843
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.39 E-value=0.0051 Score=55.28 Aligned_cols=120 Identities=10% Similarity=0.055 Sum_probs=65.4
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Q 008745 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (555)
Q Consensus 346 vyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~ 425 (555)
+++.-+......|.+++|.++++++++. .|. + ...| -+++.+....++++
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------~~~----~---~~~~-------------~~l~~~~~~~~~~~ 59 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKS----------DPK----N---ELAW-------------LVRAEIYQYLKVND 59 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT----C---HHHH-------------HHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh----------Ccc----c---hHHH-------------HHHHHHHHHcCChH
Confidence 4445556666789999999999888764 111 0 1111 11133344556676
Q ss_pred HHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcc
Q 008745 426 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 504 (555)
Q Consensus 426 ~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~-g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~ 504 (555)
+|.+.+.++.+. .|.. +...+..|...... |++++|...|..+++ ....+....+..+++.+|...|+.+
T Consensus 60 ~A~~~~~~a~~~---~~~~-----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 60 KAQESFRQALSI---KPDS-----AEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHh---CCCC-----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHH
Confidence 666666555443 2321 22445566666666 777777777776665 2222222334445566666655543
No 70
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.39 E-value=0.081 Score=53.92 Aligned_cols=161 Identities=11% Similarity=-0.064 Sum_probs=93.4
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCC---hhHHHHHHHHhhHHHHhhc-CChHHHHHHHHHHHHHHhcCCc
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFL---PIIEVKTRLRISTLLLKHT-HNVNHAKSHLERSQLLLKAIPS 80 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~---P~~EA~~rLrla~lL~e~T-~N~~~AkthLEka~~l~k~i~~ 80 (555)
+..+-.+|.-....|++..|+.+++.+++..+.++ ...-+.+....|..++... .|.++|...+++|..+ -|.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~ 170 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPK 170 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCC
Confidence 34455678888889999999999998885322111 1112344555666665544 5789999999999654 233
Q ss_pred chhhhhhHHHHHHHHHHHc---CCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHH
Q 008745 81 CFELKCRTFSLLSQCYHLV---GAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGY 157 (555)
Q Consensus 81 ~~dlK~~a~sLLa~~y~~~---~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~ 157 (555)
..+ +...++.+++.. +....+-..++++++.--. .....+.+-..++.+....+++..|.+.+++..
T Consensus 171 ~~~----~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~------~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al 240 (472)
T 4g1t_A 171 NPE----FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD------NQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL 240 (472)
T ss_dssp CHH----HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS------CHHHHHHHHHHHHHCC------CHHHHHHHHHH
T ss_pred CHH----HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc------chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333 455566665543 4334444556788875322 112222233445556666788999999988755
Q ss_pred HHHhhhCChhHHHHHHHHHHHHHhc
Q 008745 158 VCATEISYPDLQMFFATAILHVHLM 182 (555)
Q Consensus 158 ~~A~~~~~~~~~v~fals~~~~~L~ 182 (555)
. .+.....+++.++......-
T Consensus 241 ~----~~~~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 241 E----KAPGVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp H----HCSSCHHHHHHHHHHHHHTT
T ss_pred H----hCccHHHHHHHHHHHHHHcC
Confidence 4 34445566777777766653
No 71
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.38 E-value=0.0046 Score=50.29 Aligned_cols=131 Identities=18% Similarity=0.223 Sum_probs=97.8
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
.++..+|..+...+++..|++.++.+++..+ . . ..+...+|.+++. ..+.++|..+++++.... +..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~-~--~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~---~~~---- 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--R-S--AEAWYNLGNAYYK-QGDYDEAIEYYQKALELD---PRS---- 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--T-C--HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHC---TTC----
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC--c-c--hhHHHHHHHHHHH-hcCHHHHHHHHHHHHHHC---CCc----
Confidence 4567788899999999999999999997654 1 2 3456667777654 679999999999986542 222
Q ss_pred hhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHH
Q 008745 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~ 159 (555)
......++.+|...|....+...+.++++.... . -...+.++.++...||+..|...++.+...
T Consensus 69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------S----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------C----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------C----hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 245678899999999888777777887775322 1 123356788889999999999999886643
No 72
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.36 E-value=0.0079 Score=55.03 Aligned_cols=151 Identities=9% Similarity=0.019 Sum_probs=102.6
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 008745 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 427 (555)
Q Consensus 348 llsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A 427 (555)
+.-+.+....|.+++|.++++++++. .+. + ...| -+++.+....+++++|
T Consensus 61 ~~la~~~~~~~~~~~A~~~~~~~~~~----------~~~----~---~~~~-------------~~la~~~~~~~~~~~A 110 (243)
T 2q7f_A 61 INFANLLSSVNELERALAFYDKALEL----------DSS----A---ATAY-------------YGAGNVYVVKEMYKEA 110 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT----C---HHHH-------------HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----------CCc----c---hHHH-------------HHHHHHHHHhccHHHH
Confidence 33344555688999999999888765 111 0 1111 1124455678999999
Q ss_pred HHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCccc--
Q 008745 428 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES-- 505 (555)
Q Consensus 428 ~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s-- 505 (555)
.+.+.++.+.. |.. +.+.+..|.+....|++++|...|..+++...+.. .+..+++.+|+..|+.+.
T Consensus 111 ~~~~~~~~~~~---~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 111 KDMFEKALRAG---MEN-----GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT---EARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHHHHHHHHT---CCS-----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhC---CCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHcCCHHHHH
Confidence 99988877654 332 33577889999999999999999999998765432 244567788888888654
Q ss_pred --HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 506 --SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 506 --~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
+.++++. .|. ...+++..|...+.+|++.+|...
T Consensus 180 ~~~~~~~~~-~~~------------~~~~~~~la~~~~~~~~~~~A~~~ 215 (243)
T 2q7f_A 180 SQFAAVTEQ-DPG------------HADAFYNAGVTYAYKENREKALEM 215 (243)
T ss_dssp HHHHHHHHH-CTT------------CHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHh-Ccc------------cHHHHHHHHHHHHHccCHHHHHHH
Confidence 3444432 231 123577888888999999999753
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.34 E-value=0.0045 Score=53.60 Aligned_cols=156 Identities=13% Similarity=0.023 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008745 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (555)
Q Consensus 343 ~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~ 422 (555)
-+..|+.-+......|.+++|.++++++++. .|. + ...| -+++.+..-.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------~~~----~---~~~~-------------~~~~~~~~~~~ 56 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDA----------DAF----D---VDVA-------------LHLGIAYVKTG 56 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT----------TSC----C---HHHH-------------HHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------Ccc----C---hHHH-------------HHHHHHHHHcC
Confidence 3445555566666778888888777555432 222 0 1111 12244556789
Q ss_pred CHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCC
Q 008745 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (555)
Q Consensus 423 ~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~ 502 (555)
++++|.+.+.++.+. .|.. +.+.+..|......|++++|...|..+++...... .+..+++.+|...|+
T Consensus 57 ~~~~A~~~~~~~~~~---~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 57 AVDRGTELLERSLAD---APDN-----VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF---NVRFRLGVALDNLGR 125 (186)
T ss_dssp CHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhc---CCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH---HHHHHHHHHHHHcCc
Confidence 999999998887765 3432 34567788999999999999999999988754432 334567788888777
Q ss_pred ccc----HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 503 AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 503 ~~s----~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
.+. +.++++. .|. ..-+++..|...+.+|++++|...
T Consensus 126 ~~~A~~~~~~~~~~-~~~------------~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 126 FDEAIDSFKIALGL-RPN------------EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHHHHHHHHHHHH-CTT------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhc-Ccc------------chHHHHHHHHHHHHcCCHHHHHHH
Confidence 553 3444432 231 134577888888999999999753
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.30 E-value=0.0036 Score=59.48 Aligned_cols=146 Identities=11% Similarity=-0.013 Sum_probs=104.1
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhh-------cCChHHHHHHHHHHHHHHhc
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKH-------THNVNHAKSHLERSQLLLKA 77 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~-------T~N~~~AkthLEka~~l~k~ 77 (555)
..+++.+|.-+...+++..|+.+++.+++..| ....-..+.+.+|.+++.- ..+.++|...++++...--.
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQ--IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC--CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 67889999999999999999999999998765 2223346688899998872 77899999999998543221
Q ss_pred CCcchhhh----------hhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhc----
Q 008745 78 IPSCFELK----------CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIE---- 143 (555)
Q Consensus 78 i~~~~dlK----------~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~---- 143 (555)
-+...+.+ -.....++++|.+.|....+...++++++. +|...+.-..++.++.++...
T Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~l~~~~~~~g~~~ 202 (261)
T 3qky_A 130 HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA-------YPDTPWADDALVGAMRAYIAYAEQS 202 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTSTTHHHHHHHHHHHHHHHHHTS
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-------CCCCchHHHHHHHHHHHHHHhcccc
Confidence 11111221 111378899999999887777777777663 333344445556677666544
Q ss_pred ------CChHHHHHHHhhHHHH
Q 008745 144 ------GDYQSSISALQSGYVC 159 (555)
Q Consensus 144 ------~D~~~A~~~L~~g~~~ 159 (555)
|++..|+..+++....
T Consensus 203 ~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 203 VRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccchHHHHHHHHHHHHHH
Confidence 8889999999885543
No 75
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.20 E-value=0.0057 Score=57.33 Aligned_cols=140 Identities=9% Similarity=-0.039 Sum_probs=103.2
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHh-----------------hcCChHHHHHH
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLK-----------------HTHNVNHAKSH 67 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e-----------------~T~N~~~Akth 67 (555)
..+++.+|.-....++...||.+++.+++..|.-+.. ..+...+|.++++ ...+.++|...
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~--~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 118 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI--DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD 118 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH--HHHHHHHHHHHHHHHC--------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH--HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH
Confidence 4678889999999999999999999999876632222 3457788888876 25688999999
Q ss_pred HHHHHHHHhcCCcch---hhhh----------hHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhH
Q 008745 68 LERSQLLLKAIPSCF---ELKC----------RTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNS 134 (555)
Q Consensus 68 LEka~~l~k~i~~~~---dlK~----------~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~f 134 (555)
++++. +.-|... +.+. .....++++|.+.|....+...+.+.|+ .+|...+.-..++
T Consensus 119 ~~~~l---~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-------~~p~~~~~~~a~~ 188 (225)
T 2yhc_A 119 FSKLV---RGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR-------DYPDTQATRDALP 188 (225)
T ss_dssp HHHHH---TTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSTTSHHHHHHHH
T ss_pred HHHHH---HHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-------HCcCCCccHHHHH
Confidence 98874 3333332 2222 2225689999999988766666666655 3455566667788
Q ss_pred HHHHHhhhcCChHHHHHHHhhH
Q 008745 135 QLANAFIIEGDYQSSISALQSG 156 (555)
Q Consensus 135 qlA~~~~~~~D~~~A~~~L~~g 156 (555)
.++.++...|++..|++.++..
T Consensus 189 ~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 189 LMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHH
Confidence 8999999999999999998853
No 76
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.19 E-value=0.0021 Score=56.97 Aligned_cols=127 Identities=9% Similarity=0.066 Sum_probs=93.2
Q ss_pred hHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHH
Q 008745 11 LADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFS 90 (555)
Q Consensus 11 lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~s 90 (555)
|+.-+++.+++..||.+++.+++.. .-.+.+++.+|+++++ ..+.++|..+++++..+ -|.. ..++.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-----p~~~~~~~~la~~y~~-~~~~~~A~~~~~~al~~---~p~~----~~a~~ 69 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-----RQKSIKGFYFAKLYYE-AKEYDLAKKYICTYINV---QERD----PKAHR 69 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-----HHHHTTHHHHHHHHHH-TTCHHHHHHHHHHHHHH---CTTC----HHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-----cccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh---CCCC----HHHHH
Confidence 4455678889999999999998642 3456678899988664 68999999999999654 2333 46789
Q ss_pred HHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHH-HHhhHHHHH
Q 008745 91 LLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSIS-ALQSGYVCA 160 (555)
Q Consensus 91 LLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~-~L~~g~~~A 160 (555)
.|+.+|.+.|....+...++++|+.--.+ ....+.++.++...|++..|.. .+++...+.
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNPTQ----------KDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 99999999999988888888888864221 1234678899999998876665 467765543
No 77
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.17 E-value=0.012 Score=50.58 Aligned_cols=104 Identities=11% Similarity=-0.011 Sum_probs=79.6
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008745 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (555)
Q Consensus 351 vi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~ 430 (555)
+.....+|.+++|.++++++++. .|. + . .+| -|++.|..-.++|++|++.
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~----------~p~----~---~-----~~~--------~nlg~~~~~~~~~~~A~~~ 64 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIEL----------DPS----N---I-----TFY--------NNKAAVYFEEKKFAECVQF 64 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----------CTT----C---H-----HHH--------HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh----------CCC----C---H-----HHH--------HhHHHHHHHhhhHHHHHHH
Confidence 45556789999999999999875 232 0 1 122 3457778889999999999
Q ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhH
Q 008745 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM 485 (555)
Q Consensus 431 l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~ 485 (555)
.....++...++... .....+++-+|......|++++|...|..|+....+++.
T Consensus 65 ~~~al~~~~~~~~~~-~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 65 CEKAVEVGRETRADY-KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp HHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHhCcccchhh-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence 999988876665432 234567888999999999999999999999987776653
No 78
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.16 E-value=0.0091 Score=54.14 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=107.0
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+..++.+|..+...+++..|+.+++.++ .| .+.+...+|.+++ ...+.++|..+++++..+- |..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~------~~--~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~---~~~--- 70 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ------DP--HSRICFNIGCMYT-ILKNMTEAEKAFTRSINRD---KHL--- 70 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS------SC--CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC---TTC---
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc------CC--ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC---ccc---
Confidence 4457888999999999999999999885 22 2457888898765 4678999999999996542 222
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhh------cccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHH
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSAS------QDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYV 158 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~------e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~ 158 (555)
..+...++.+|...|....+...+.++++...... .+...........+.++.++...||+..|++.+++...
T Consensus 71 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 71 -AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 36788999999999999888888888888653211 00002233345667899999999999999999999776
Q ss_pred HHhh
Q 008745 159 CATE 162 (555)
Q Consensus 159 ~A~~ 162 (555)
+...
T Consensus 150 ~~p~ 153 (213)
T 1hh8_A 150 MKSE 153 (213)
T ss_dssp TCCS
T ss_pred cCcc
Confidence 6543
No 79
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.12 E-value=0.0076 Score=49.22 Aligned_cols=106 Identities=9% Similarity=0.047 Sum_probs=85.8
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
.+..+..+|..+...+++..|+.+++.+++..+. . +.+...+|.+++ ...+.++|...++++..+....+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~--~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---N--MTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C--HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---c--HHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHH
Confidence 5678899999999999999999999999987651 1 456778888765 578999999999999876554444445
Q ss_pred hhhhHHHHHHHHHHHcCCCchHhHHHHHHHHH
Q 008745 84 LKCRTFSLLSQCYHLVGAIPPQKLILYKALDL 115 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~ 115 (555)
....+...++.+|.+.|....+...+.++++.
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55788999999999999988787777888774
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.11 E-value=0.013 Score=66.32 Aligned_cols=149 Identities=15% Similarity=0.074 Sum_probs=109.0
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Q 008745 350 VVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQE 429 (555)
Q Consensus 350 svi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~ 429 (555)
-+......|.+++|.++++++++. .|+ . . ..| -|++.+..-.+++++|.+
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l----------~P~-----~--~-----~a~--------~nLg~~l~~~g~~~eA~~ 64 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEV----------FPE-----F--A-----AAH--------SNLASVLQQQGKLQEALM 64 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----------CSC-----C--H-----HHH--------HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh----------CCC-----C--H-----HHH--------HHHHHHHHHcCCHHHHHH
Confidence 356667789999999999999876 232 0 1 122 233556677899999999
Q ss_pred HHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCccc----
Q 008745 430 ALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES---- 505 (555)
Q Consensus 430 ~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s---- 505 (555)
.+.+..+. .|.. +..++-+|......|++++|...|+.|+++..+. .-+-.|++.+|...|+.+.
T Consensus 65 ~~~~Al~l---~P~~-----~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~---~~a~~~Lg~~~~~~g~~~eAi~~ 133 (723)
T 4gyw_A 65 HYKEAIRI---SPTF-----ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF---ADAHSNLASIHKDSGNIPEAIAS 133 (723)
T ss_dssp HHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Confidence 88877655 4543 3467889999999999999999999999876543 3355678899988888542
Q ss_pred HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 506 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 506 ~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
+.++++ ++|. -+.+++-.|..++.++++.||...
T Consensus 134 ~~~Al~-l~P~------------~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 134 YRTALK-LKPD------------FPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HHHHHH-HCSC------------CHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHHHHH-hCCC------------ChHHHhhhhhHHHhcccHHHHHHH
Confidence 667776 4663 134567778888999999998653
No 81
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.06 E-value=0.025 Score=52.65 Aligned_cols=100 Identities=11% Similarity=-0.060 Sum_probs=79.3
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
-+..+..+|..+...+++..|+.+++.+++..|. . +.+...+|.+++ ...+.++|..+++++..+ -|..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~--~~~~~~la~~~~-~~~~~~~A~~~~~~al~~---~~~~-- 110 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---M--PEVFNYLGIYLT-QAGNFDAAYEAFDSVLEL---DPTY-- 110 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---C--HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---CTTC--
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---c--HHHHHHHHHHHH-HccCHHHHHHHHHHHHhc---Cccc--
Confidence 4567888999999999999999999999987652 2 345677888764 578999999999999654 2222
Q ss_pred hhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHh
Q 008745 84 LKCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s 116 (555)
..+...++.+|...|....+...+.++++..
T Consensus 111 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 111 --NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp --THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 3678899999999999888888888888754
No 82
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.05 E-value=0.26 Score=48.44 Aligned_cols=145 Identities=10% Similarity=0.106 Sum_probs=88.1
Q ss_pred hccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHH
Q 008745 18 KGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYH 97 (555)
Q Consensus 18 ~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~ 97 (555)
.|++.+||..++.+.+. .|.....+++=+++.++.-- +.++|...+++ . .-. ...+..+|++.|.
T Consensus 12 ~g~y~~ai~~~~~~~~~----~p~~~~e~~~~l~r~yi~~g-~~~~al~~~~~-------~-~~~--~~~a~~~la~~~~ 76 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPS----SPERDVERDVFLYRAYLAQR-KYGVVLDEIKP-------S-SAP--ELQAVRMFAEYLA 76 (291)
T ss_dssp TTCHHHHHHHHHHSCCC----SHHHHHHHHHHHHHHHHHTT-CHHHHHHHSCT-------T-SCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccC----CchhhHHHHHHHHHHHHHCC-CHHHHHHHhcc-------c-CCh--hHHHHHHHHHHHc
Confidence 45788888888776544 45543334555577666543 66777776632 1 112 4578888999999
Q ss_pred HcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHH
Q 008745 98 LVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAIL 177 (555)
Q Consensus 98 ~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~ 177 (555)
..|....+-..+.+.+.... .|... .+.+.++.++...|++..|++.+++ .....+.+.++.+
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~-----~P~~~---~~~~~la~~~~~~g~~~~Al~~l~~---------~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSV-----DVTNT---TFLLMAASIYFYDQNPDAALRTLHQ---------GDSLECMAMTVQI 139 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCC-----CCSCH---HHHHHHHHHHHHTTCHHHHHHHHTT---------CCSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhccc-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHhC---------CCCHHHHHHHHHH
Confidence 88766544444444333210 12211 2357789999999999999999998 2334566666666
Q ss_pred HHHhcccCchhHHHHHHHHH
Q 008745 178 HVHLMQWDDENSVLRSINQC 197 (555)
Q Consensus 178 ~~~L~~~~~~~~v~~~l~~~ 197 (555)
+..+ .+++.....+.++
T Consensus 140 ~~~~---g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 140 LLKL---DRLDLARKELKKM 156 (291)
T ss_dssp HHHT---TCHHHHHHHHHHH
T ss_pred HHHC---CCHHHHHHHHHHH
Confidence 5554 4445444444443
No 83
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.03 E-value=0.03 Score=52.08 Aligned_cols=102 Identities=13% Similarity=-0.006 Sum_probs=73.1
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 008745 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (555)
Q Consensus 345 Lvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~ 424 (555)
-+++.-+......|.+++|.++++++++. .|. ....| -+++.+....++|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------~~~-------~~~~~-------------~~la~~~~~~~~~ 93 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAI----------RPD-------MPEVF-------------NYLGIYLTQAGNF 93 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CCC-------CHHHH-------------HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHc----------CCC-------cHHHH-------------HHHHHHHHHccCH
Confidence 44555566677789999999999888775 222 01122 1235556678999
Q ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh
Q 008745 425 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (555)
Q Consensus 425 ~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~ 484 (555)
++|.+.+.++.+. .|.. +...+.+|......|++++|...|..+++..++..
T Consensus 94 ~~A~~~~~~al~~---~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 94 DAAYEAFDSVLEL---DPTY-----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHHHHHH---CTTC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhc---Cccc-----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 9999988887765 3432 35677888888999999999999999988776654
No 84
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.01 E-value=0.019 Score=53.23 Aligned_cols=166 Identities=11% Similarity=0.058 Sum_probs=104.3
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHHHHH---hcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 008745 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDALL---KLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (555)
Q Consensus 348 llsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~---kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~ 424 (555)
+-.++.....|.+++|..+++++++.--+.-. ..+.... ..+. ..+.-+++.+....+++
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--------~~~~---------~~~~~~lg~~~~~~g~~ 70 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKN--------SEIS---------SKLATELALAYKKNRNY 70 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTT--------SHHH---------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcch--------hhhh---------HHHHHHHHHHHHHCCCH
Confidence 34466667889999999999988875211100 0111110 0110 01112356777889999
Q ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcc
Q 008745 425 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 504 (555)
Q Consensus 425 ~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~ 504 (555)
++|.+.+.+..+. .|.- +..++.+|......|++++|...|..++++.++.. -+..|++.+|...|+.+
T Consensus 71 ~~A~~~~~~al~~---~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 71 DKAYLFYKELLQK---APNN-----VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL---AANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHhHHH
Confidence 9999988776654 4543 45678899999999999999999999998765543 34556677765544322
Q ss_pred --cHHHHHHh-hCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 505 --SSSQAIDL-IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 505 --s~~~aL~l-i~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
........ +.|. ....++|-.|+..+..|++++|+.+
T Consensus 140 ~~~~~~~~~~~~~~~-----------~~~~a~~~~g~~~~~~~~~~~A~~~ 179 (208)
T 3urz_A 140 KKKLETDYKKLSSPT-----------KMQYARYRDGLSKLFTTRYEKARNS 179 (208)
T ss_dssp HHHHHHHHC---CCC-----------HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-----------chhHHHHHHHHHHHHccCHHHHHHH
Confidence 11111111 1221 0223577789999999999999864
No 85
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.031 Score=56.31 Aligned_cols=194 Identities=10% Similarity=0.029 Sum_probs=131.1
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCC------------hhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHH
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFL------------PIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQ 72 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~------------P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~ 72 (555)
..+.+.-|+.+..++++..|++.++.+++..++-. ......+=.++|.+++ ...+.++|..+++++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~-~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYV-TMGAKDKLREFIPHST 82 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 34577889999999999999999999997444111 0112233467787765 4778999999999987
Q ss_pred HHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHH
Q 008745 73 LLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISA 152 (555)
Q Consensus 73 ~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~ 152 (555)
.....++.-. .--.....+..++...|....+.....++++..... ... ....+....+|.++...|+|..|...
T Consensus 83 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 157 (434)
T 4b4t_Q 83 EYMMQFAKSK-TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE---KRV-FLKHSLSIKLATLHYQKKQYKDSLAL 157 (434)
T ss_dssp HHHHTSCHHH-HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS---SCC-SSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHccchH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh---Ccc-HHHHHHHHHHHHHHHHccChHHHHHH
Confidence 7666554321 112345667777777777666666777777765431 122 23356677899999999999999999
Q ss_pred HhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHhcC
Q 008745 153 LQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESID 205 (555)
Q Consensus 153 L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~ 205 (555)
++.........++....+-+-+..+.+.+.. .+.+.....+.++..+..+++
T Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~ 209 (434)
T 4b4t_Q 158 INDLLREFKKLDDKPSLVDVHLLESKVYHKL-RNLAKSKASLTAARTAANSIY 209 (434)
T ss_dssp HHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHhhcCC
Confidence 9998888888877554444444444443332 566666667777776666443
No 86
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.92 E-value=0.015 Score=61.61 Aligned_cols=167 Identities=13% Similarity=0.047 Sum_probs=118.2
Q ss_pred HHHHHHhHHHHHhhccH-HHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 5 AEGLWGLADYHENKGEI-GKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i-~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
+..+..+|..+...+++ ..|+.|++.+++..|.. +.+...+|.+++. ..+.++|..++++|..+ -|.
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~---~p~--- 169 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-----VEAWNQLGEVYWK-KGDVTSAHTCFSGALTH---CKN--- 169 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHH-HTCHHHHHHHHHHHHTT---CCC---
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh---CCC---
Confidence 46778888888999999 99999999999876522 3467788877765 68999999999999543 232
Q ss_pred hhhhHHHHHHHHHHHc---------CCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhc--------CCh
Q 008745 84 LKCRTFSLLSQCYHLV---------GAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIE--------GDY 146 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~---------~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~--------~D~ 146 (555)
..+...|+.+|... |....+...++++++..-.+ . ...+.++.++... |++
T Consensus 170 --~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~-----~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 170 --KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-----G-----RSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp --HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-----H-----HHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred --HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-----H-----HHHHHHHHHHHHHHHhhccccchH
Confidence 37899999999998 76666666677777753221 1 2234567777666 999
Q ss_pred HHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 008745 147 QSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDR 199 (555)
Q Consensus 147 ~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~ 199 (555)
..|+..+++...+... ......+++.++.++..+- +++.......++..
T Consensus 238 ~~A~~~~~~al~~~p~-~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~ 286 (474)
T 4abn_A 238 QQALSAYAQAEKVDRK-ASSNPDLHLNRATLHKYEE---SYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHCGG-GGGCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Confidence 9999999997776321 0024567777887777663 44544444444443
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.88 E-value=0.017 Score=53.32 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=90.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 008745 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (555)
Q Consensus 414 ~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnl 493 (555)
.+.+....+++.+|.+.+.+..+.... . .+.+.+..|......|++++|...|..|++...+ ..-+..++
T Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~~~--~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 82 (228)
T 4i17_A 13 EGNDALNAKNYAVAFEKYSEYLKLTNN--Q-----DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANAYIGK 82 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTT--C-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhccCC--C-----CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHHHHHH
Confidence 466778899999999998887765430 1 1246677999999999999999999999977655 33456678
Q ss_pred HHHHhhcCCccc----HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 494 AVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 494 Ai~yL~~g~~~s----~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
+.+|...|+.+. +.++++ +.|. +.......+.+++-.|...+.+|++++|...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~-~~p~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 139 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIK-AVPG-----NATIEKLYAIYYLKEGQKFQQAGNIEKAEEN 139 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HSTT-----CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH-HCCC-----cHHHHHHHHHHHHHHhHHHHHhccHHHHHHH
Confidence 889989888553 455554 3452 1112223556799999999999999999753
No 88
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.85 E-value=0.062 Score=50.91 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=105.5
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHh---hcCChHHHHHHHHHHHHHHhcCCcc
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLK---HTHNVNHAKSHLERSQLLLKAIPSC 81 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e---~T~N~~~AkthLEka~~l~k~i~~~ 81 (555)
+.++..++..+...+++..|+.+++.+++... | .+...+|.+++. -..|.++|..++++|..+ +
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~---~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~-- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKE---N----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N-- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---H----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T--
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---H----HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C--
Confidence 46778899999999999999999999998432 2 467788987775 278999999999999654 1
Q ss_pred hhhhhhHHHHHHHHHHH----cCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhh----cCChHHHHHHH
Q 008745 82 FELKCRTFSLLSQCYHL----VGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFII----EGDYQSSISAL 153 (555)
Q Consensus 82 ~dlK~~a~sLLa~~y~~----~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~----~~D~~~A~~~L 153 (555)
-..+...|+.+|.. .+....+...++++++.- . -.-.+.++.++.. .+|+..|++.+
T Consensus 73 ---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~ 137 (273)
T 1ouv_A 73 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--------Y----AEGCASLGGIYHDGKVVTRDFKKAVEYF 137 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------C----HHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred ---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--------C----ccHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 34678899999999 777766666777777641 1 1234567888887 99999999999
Q ss_pred hhHHHHHhhhCChhHHHHHHHHHHHHH
Q 008745 154 QSGYVCATEISYPDLQMFFATAILHVH 180 (555)
Q Consensus 154 ~~g~~~A~~~~~~~~~v~fals~~~~~ 180 (555)
+++... ++ ....+.++.++..
T Consensus 138 ~~a~~~----~~--~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 138 TKACDL----ND--GDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHT----TC--HHHHHHHHHHHHH
T ss_pred HHHHhc----Cc--HHHHHHHHHHHHc
Confidence 987653 33 3445555555544
No 89
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.84 E-value=0.016 Score=48.68 Aligned_cols=103 Identities=14% Similarity=0.076 Sum_probs=83.9
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
-+..+..+|..+...+++..|+.+++.+++..+ .+...+.+...+|.+++ ...+.++|...++++..+ -|..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~---~~~~-- 98 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDA--TPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEK---DGGD-- 98 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---TSCC--
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc--cchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhh---CccC--
Confidence 356788999999999999999999999998766 44445788889998764 578999999999999654 2222
Q ss_pred hhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHh
Q 008745 84 LKCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s 116 (555)
..+...++.+|...|....+...+.++++..
T Consensus 99 --~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 99 --VKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4567889999999999988888888888754
No 90
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.83 E-value=0.015 Score=62.16 Aligned_cols=131 Identities=12% Similarity=0.012 Sum_probs=89.5
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+.++..+|..+...+++..|+.+++.+++..+. .+.+...+|.+++ ...+.++|..+++++..+ -|..
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~---~p~~--- 90 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-----HPEAVARLGRVRW-TQQRHAEAAVLLQQASDA---APEH--- 90 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-----CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---CTTC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhc---CCCC---
Confidence 456777888888888888888888888876541 1445677777654 457788888888888543 1221
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhc---CChHHHHHHHhhHHH
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIE---GDYQSSISALQSGYV 158 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~---~D~~~A~~~L~~g~~ 158 (555)
..+...|+.+|.+.|....+...+.++++..-. . ...++.++.++... ||+..|.+.+++..+
T Consensus 91 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~----~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 91 -PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE------E----PYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C----HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 346677888888888777777777777765321 1 13345677777777 888888888887554
No 91
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.82 E-value=0.019 Score=51.89 Aligned_cols=106 Identities=8% Similarity=-0.101 Sum_probs=80.0
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 008745 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 427 (555)
Q Consensus 348 llsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A 427 (555)
+--+......|.+++|.++++++++. .|. +...| -++..+....+++++|
T Consensus 40 ~~lg~~~~~~g~~~eA~~~~~~al~~----------~P~-------~~~~~-------------~~lg~~~~~~g~~~~A 89 (151)
T 3gyz_A 40 YSYAYDFYNKGRIEEAEVFFRFLCIY----------DFY-------NVDYI-------------MGLAAIYQIKEQFQQA 89 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT-------CHHHH-------------HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----------CCC-------CHHHH-------------HHHHHHHHHHccHHHH
Confidence 33355667889999999999888765 232 12233 2346777889999999
Q ss_pred HHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHH
Q 008745 428 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (555)
Q Consensus 428 ~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~l 491 (555)
.+....+...- |.- +..++-+|.....+|++++|...|..|+++..+.+++.-+.-
T Consensus 90 i~~~~~al~l~---P~~-----~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A~~ 145 (151)
T 3gyz_A 90 ADLYAVAFALG---KND-----YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145 (151)
T ss_dssp HHHHHHHHHHS---SSC-----CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHhhC---CCC-----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99988776654 432 346788999999999999999999999999988886655543
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.80 E-value=0.016 Score=53.79 Aligned_cols=102 Identities=12% Similarity=0.071 Sum_probs=78.2
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHH--------------HHhhHHHHhhcCChHHHHHHHHH
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTR--------------LRISTLLLKHTHNVNHAKSHLER 70 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~r--------------Lrla~lL~e~T~N~~~AkthLEk 70 (555)
+..++..|..+-..|++..|+.|++.+++..| -..++... ..+|.+++ ...+.++|..++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~ 79 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI---DRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH---HHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 46788888899999999999999999998653 23333222 22777665 57899999999999
Q ss_pred HHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhh
Q 008745 71 SQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTS 117 (555)
Q Consensus 71 a~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~ 117 (555)
+..+ -|.. ..+...|+.+|...|....+...++++++.--
T Consensus 80 al~~---~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P 119 (208)
T 3urz_A 80 LLQK---APNN----VDCLEACAEMQVCRGQEKDALRMYEKILQLEA 119 (208)
T ss_dssp HHHH---CTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHH---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9643 2333 35678899999999999888888899888643
No 93
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.79 E-value=0.0084 Score=49.83 Aligned_cols=103 Identities=10% Similarity=0.006 Sum_probs=80.1
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
.++..+|..+...+++..|+.+++.+++..| .....+.+.+.+|.+++ ...+.++|..+++++... -|.. ...
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~---~p~~-~~~ 75 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSR---YPTH-DKA 75 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---CTTS-TTH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHH---CCCC-ccc
Confidence 4577889999999999999999999998766 43444567888898766 578999999999998543 2222 223
Q ss_pred hhHHHHHHHHHHHcCCCchHhHHHHHHHHH
Q 008745 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDL 115 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~ 115 (555)
-.+...++.+|.+.|....+...+.+.++.
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467888999999999888777777777764
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.75 E-value=0.023 Score=63.15 Aligned_cols=151 Identities=12% Similarity=-0.014 Sum_probs=103.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcc-cCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 008745 355 RPKGLFKECMQRIQSGMQTIQDALLKLG-ITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQ 433 (555)
Q Consensus 355 ~~kg~~~kA~Kyl~~gl~~i~~~l~kl~-~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q 433 (555)
...|.+++|.+.++++++.. +.+.+ ..|. +...| -+++.+....+++++|.+.+.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~---~~~~~~~~p~-------~~~~~-------------~~~a~~~~~~g~~~~A~~~~~~ 458 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGA---LDADGVDFSE-------SVELP-------------LMEVRALLDLGDVAKATRKLDD 458 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC----------CCTT-------CSHHH-------------HHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhc---cccccccccc-------chhHH-------------HHHHHHHHhcCCHHHHHHHHHH
Confidence 77899999999888877321 11111 1222 01122 1125556677999999999887
Q ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCccc---HHHHH
Q 008745 434 MKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES---SSQAI 510 (555)
Q Consensus 434 ~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s---~~~aL 510 (555)
+.+. .|.- ...++.+|......|++++|..+|+.|+++..+.. -+..|++.+|...|+.+. +.+++
T Consensus 459 al~~---~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~lg~~~~~~g~~~~~~~~~~al 527 (681)
T 2pzi_A 459 LAER---VGWR-----WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL---APKLALAATAELAGNTDEHKFYQTVW 527 (681)
T ss_dssp HHHH---HCCC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS---HHHHHHHHHHHHHTCCCTTCHHHHHH
T ss_pred Hhcc---Ccch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7665 3442 45788999999999999999999999998876542 344578888888787543 55666
Q ss_pred HhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 511 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 511 ~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
+ ++|. -+.++|-.|..++.+|+++||...
T Consensus 528 ~-~~P~------------~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 528 S-TNDG------------VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp H-HCTT------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred H-hCCc------------hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4 4553 123578889999999999999753
No 95
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.73 E-value=0.72 Score=48.04 Aligned_cols=106 Identities=12% Similarity=0.084 Sum_probs=61.5
Q ss_pred cCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHh
Q 008745 422 SGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG---CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF 498 (555)
Q Consensus 422 ~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g---~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL 498 (555)
.++++|.+-+....+. -.+...+-+|.+....| +++.|...|..|+.. .+ .-+..|++.+|.
T Consensus 310 ~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~~----~~a~~~Lg~~y~ 374 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQ----------GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-GE----KAAQFNLGNALL 374 (490)
T ss_dssp CCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-TC----HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-CC----HHHHHHHHHHHH
Confidence 5777777665555432 11235566666655545 777888888877765 22 234556677776
Q ss_pred hcCC--cccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHh----hcChhhhhh
Q 008745 499 CIGD--AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARL 551 (555)
Q Consensus 499 ~~g~--~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~----q~~~~eAr~ 551 (555)
. |. +....++++...-.... + -.-+++--|...+. .+|+++|+.
T Consensus 375 ~-g~g~~~~~~~A~~~~~~A~~~-----~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 375 Q-GKGVKKDEQQAAIWMRKAAEQ-----G---LSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp H-TSSSCCCHHHHHHHHHHHHHT-----T---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred c-CCCCCCCHHHHHHHHHHHHhC-----C---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 5 33 23355555444333221 1 13457777888777 788888875
No 96
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.65 E-value=0.013 Score=61.99 Aligned_cols=153 Identities=12% Similarity=0.046 Sum_probs=109.4
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhh--------cCChHHHHHHHHHHHHHHh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKH--------THNVNHAKSHLERSQLLLK 76 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~--------T~N~~~AkthLEka~~l~k 76 (555)
+.++..||.-+...+++..|+.|++.+++..| . +.+...+|.+++.- ..+.++|..++++|..+
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-- 208 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK----N--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-- 208 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC----C--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----C--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--
Confidence 46788899999999999999999999998765 3 47788899888763 17889999999999654
Q ss_pred cCCcchhhhhhHHHHHHHHHHHc--------CCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHH
Q 008745 77 AIPSCFELKCRTFSLLSQCYHLV--------GAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQS 148 (555)
Q Consensus 77 ~i~~~~dlK~~a~sLLa~~y~~~--------~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~ 148 (555)
-|... .++..|+.+|... |....+...++++++..- . ..-.....+.++.++...|++..
T Consensus 209 -~p~~~----~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~----~~~~~~~~~~lg~~~~~~g~~~~ 276 (474)
T 4abn_A 209 -DVLDG----RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR---K----ASSNPDLHLNRATLHKYEESYGE 276 (474)
T ss_dssp -CTTCH----HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG---G----GGGCHHHHHHHHHHHHHTTCHHH
T ss_pred -CCCCH----HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC---C----cccCHHHHHHHHHHHHHcCCHHH
Confidence 23332 4667788888777 556666666677776521 0 01222445678999999999999
Q ss_pred HHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHh
Q 008745 149 SISALQSGYVCATEISYPDLQMFFATAILHVHL 181 (555)
Q Consensus 149 A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L 181 (555)
|++.+++...+.-. .....+.+..++..+
T Consensus 277 A~~~~~~al~l~p~----~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 277 ALEGFSQAAALDPA----WPEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC----CHHHHHHHHHHHHHH
Confidence 99999997765422 234445555555444
No 97
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.64 E-value=0.067 Score=52.72 Aligned_cols=163 Identities=12% Similarity=0.029 Sum_probs=110.9
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
..++..+|+.+...++...|++.++.++.... -|-.. .+++.+|.++. ...+.++|...|++ +..
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~-~P~~~--~~~~~la~~~~-~~g~~~~Al~~l~~--------~~~--- 129 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSV-DVTNT--TFLLMAASIYF-YDQNPDAALRTLHQ--------GDS--- 129 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCC-CCSCH--HHHHHHHHHHH-HTTCHHHHHHHHTT--------CCS---
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhccc-CCCCH--HHHHHHHHHHH-HCCCHHHHHHHHhC--------CCC---
Confidence 45777899999999999999999999886532 02233 34777787766 66899999999966 332
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhC
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~ 164 (555)
..+...++++|.+.|....+...++++++..- ... .+++..-...+....|++..|+..++...+. .
T Consensus 130 -~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-------~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----~ 196 (291)
T 3mkr_A 130 -LECMAMTVQILLKLDRLDLARKELKKMQDQDE-------DAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK----C 196 (291)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----S
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-------CcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----C
Confidence 24788899999999999888888888877531 111 1122112223344568999999999986654 2
Q ss_pred ChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHH
Q 008745 165 YPDLQMFFATAILHVHLMQWDDENSVLRSINQCD 198 (555)
Q Consensus 165 ~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~ 198 (555)
.....+++.++.++..+- ++++.+..+.++.
T Consensus 197 p~~~~~~~~la~~~~~~g---~~~eA~~~l~~al 227 (291)
T 3mkr_A 197 SPTLLLLNGQAACHMAQG---RWEAAEGVLQEAL 227 (291)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Confidence 334566777777776664 4555555555444
No 98
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.62 E-value=0.12 Score=41.86 Aligned_cols=107 Identities=9% Similarity=-0.011 Sum_probs=77.0
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 008745 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 427 (555)
Q Consensus 348 llsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A 427 (555)
+.-+......|.+++|.++++++++. .|. + ...| -+++.+....+++.+|
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~----------~~~----~---~~~~-------------~~la~~~~~~~~~~~A 57 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL----------DPT----N---MTYI-------------TNQAAVYFEKGDYNKC 57 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT----C---HHHH-------------HHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc----------CCc----c---HHHH-------------HHHHHHHHHhccHHHH
Confidence 33445556689999999999888775 121 0 1111 1235556678999999
Q ss_pred HHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhH
Q 008745 428 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM 485 (555)
Q Consensus 428 ~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~ 485 (555)
.+.+.++.+.....|... ...+.+.+..|......|++++|...|..+++...++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 114 (131)
T 1elr_A 58 RELCEKAIEVGRENREDY-RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDV 114 (131)
T ss_dssp HHHHHHHHHHHHHSTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhhccccchhH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHH
Confidence 999999888876653321 123667889999999999999999999999988765543
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.59 E-value=0.036 Score=59.25 Aligned_cols=137 Identities=12% Similarity=0.057 Sum_probs=85.0
Q ss_pred hccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHH
Q 008745 18 KGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYH 97 (555)
Q Consensus 18 ~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~ 97 (555)
+++...|+.+++.+++..+. .+.+...+|.+++. ..+.++|..+++++..+ -|.. ..+...|+.+|.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~---~p~~----~~~~~~lg~~~~ 68 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-----DFVAWLMLADAELG-MGDTTAGEMAVQRGLAL---HPGH----PEAVARLGRVRW 68 (568)
T ss_dssp -------------------C-----CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTT---STTC----HHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHH
Confidence 35778899999999977551 23567788887765 68999999999999543 2332 457889999999
Q ss_pred HcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHH
Q 008745 98 LVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAIL 177 (555)
Q Consensus 98 ~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~ 177 (555)
..|....+...+.++++..-.+ ....+.++.++...||+..|++.+++..+..... ..+++.++.+
T Consensus 69 ~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~ 134 (568)
T 2vsy_A 69 TQQRHAEAAVLLQQASDAAPEH----------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE----PYITAQLLNW 134 (568)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Confidence 9999988888889998864321 1344678999999999999999999977764322 2344445555
Q ss_pred HHHh
Q 008745 178 HVHL 181 (555)
Q Consensus 178 ~~~L 181 (555)
+..+
T Consensus 135 ~~~~ 138 (568)
T 2vsy_A 135 RRRL 138 (568)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 4444
No 100
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.51 E-value=0.16 Score=44.45 Aligned_cols=119 Identities=12% Similarity=0.010 Sum_probs=84.1
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Q 008745 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (555)
Q Consensus 346 vyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~ 425 (555)
.+.--+.....+|.+++|.++++++++.+.....+ ..|+ ...|. -+--....++-|++.|..-.++|.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~--~~~~--------~~~~~--~~~~~~~~~~~nla~~~~~~~~~~ 80 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILR--EKPG--------EPEWV--ELDRKNIPLYANMSQCYLNIGDLH 80 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT--SCTT--------SHHHH--HHHHTHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccc--CCCC--------HHHHH--HHHHHHHHHHHHHHHHHHhcCcHH
Confidence 34444666677899999999999999986553221 1111 11221 111113344456788899999999
Q ss_pred HHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh
Q 008745 426 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (555)
Q Consensus 426 ~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~ 484 (555)
+|.+....+.++ .|.- +..++.+|.....+|++++|...|..|+++..+..
T Consensus 81 ~A~~~~~~al~~---~p~~-----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 81 EAEETSSEVLKR---EETN-----EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHH---STTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHhc---CCcc-----hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 999998877766 3443 45789999999999999999999999998865543
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.50 E-value=0.028 Score=48.40 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=74.6
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 008745 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (555)
Q Consensus 345 Lvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~ 424 (555)
-.+.--+.....+|.+++|.++++++++. .|. ....| -+++.|..-.+++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~----------~p~-------~~~~~-------------~~~~~~~~~~~~~ 63 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR----------DPE-------NAILY-------------SNRAACLTKLMEF 63 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT-------CHHHH-------------HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCC-------CHHHH-------------HHHhhHHHhhccH
Confidence 34444566677889999999999998875 222 01122 2346667788999
Q ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh
Q 008745 425 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (555)
Q Consensus 425 ~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~ 483 (555)
.+|++.+..+.++ .|.- +..++.+|.....+|++++|...|..|+++-++.
T Consensus 64 ~~A~~~~~~al~~---~p~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 64 QRALDDCDTCIRL---DSKF-----IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHh---hhhh-----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 9999998887765 3432 3467889999999999999999999999876443
No 102
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.50 E-value=0.042 Score=45.08 Aligned_cols=112 Identities=13% Similarity=0.008 Sum_probs=76.1
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 008745 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 426 (555)
Q Consensus 347 yllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~ 426 (555)
++.-+......|.+++|.++++++++. .|. ....| -+++.+....+++++
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~----------~~~-------~~~~~-------------~~la~~~~~~~~~~~ 68 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKR----------NPK-------DAKLY-------------SNRAACYTKLLEFQL 68 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTT----------CTT-------CHHHH-------------HHHHHHHTTTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCC-------cHHHH-------------HHHHHHHHHhccHHH
Confidence 333455566789999999999888654 222 01122 123556677899999
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhh
Q 008745 427 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC 499 (555)
Q Consensus 427 A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~ 499 (555)
|.+.+.++.+. .|. .+...+..|......|++++|...|..+++...+.. -+..+++.+|..
T Consensus 69 A~~~~~~a~~~---~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~ 130 (133)
T 2lni_A 69 ALKDCEECIQL---EPT-----FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK---EAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCC-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHH
Confidence 99988877764 443 245678899999999999999999999988754432 123344445544
No 103
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.46 E-value=0.12 Score=41.72 Aligned_cols=118 Identities=11% Similarity=-0.006 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008745 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (555)
Q Consensus 344 aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~ 423 (555)
+-+++.-+......|.+++|.++++++++. .|. + ...| -+++.+....++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------~~~----~---~~~~-------------~~~a~~~~~~~~ 61 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL----------NPA----N---AVYF-------------CNRAAAYSKLGN 61 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT----C---HHHH-------------HHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc----------CCC----C---HHHH-------------HHHHHHHHHhhc
Confidence 345555566666789999999999888765 121 0 1112 123555667899
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCC
Q 008745 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (555)
Q Consensus 424 ~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~ 502 (555)
+++|.+.+.+..+. .|.. +...+..|......|++++|...|..+++...+.. .+..+++.++...|+
T Consensus 62 ~~~A~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 62 YAGAVQDCERAICI---DPAY-----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE---TYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhc---CccC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch---HHHHHHHHHHHHHhc
Confidence 99999988877664 4442 45678899999999999999999999998765432 233445555555443
No 104
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.43 E-value=0.015 Score=51.59 Aligned_cols=127 Identities=12% Similarity=0.126 Sum_probs=90.3
Q ss_pred HHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHH
Q 008745 13 DYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLL 92 (555)
Q Consensus 13 e~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLL 92 (555)
..+...+++..|+.+++.+++..|. .+.+...+|.+++ ...+.++|..+++++..+- |.. ..+...+
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~---p~~----~~~~~~l 84 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQ-----NSEQWALLGEYYL-WQNDYSNSLLAYRQALQLR---GEN----AELYAAL 84 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCS-----CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHH---CSC----HHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcC---CCC----HHHHHHH
Confidence 3455667899999999999987651 1356778888765 5789999999999996543 222 3467789
Q ss_pred HHH-HHHcCCC--chHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhh
Q 008745 93 SQC-YHLVGAI--PPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (555)
Q Consensus 93 a~~-y~~~~~~--~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~ 162 (555)
+.+ |...|.. ..+...+.++++..-. . ....+.++.++...||+..|+..++++......
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~~p~------~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALALDSN------E----ITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHCTT------C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhCCC------c----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 999 7788886 7777777888875322 1 133456888999999999999999997766544
No 105
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.41 E-value=0.05 Score=45.48 Aligned_cols=102 Identities=14% Similarity=0.066 Sum_probs=82.3
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
.+..+..+|..+...+++..|+.+++.+++..+. . +.+...+|.+++ ...+.++|..+++++..+- |.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~--~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~---p~--- 75 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---V--AVYYTNRALCYL-KMQQPEQALADCRRALELD---GQ--- 75 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C--HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC---TT---
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---c--HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhC---ch---
Confidence 3577889999999999999999999999987652 1 346777887765 5889999999999996542 22
Q ss_pred hhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhh
Q 008745 84 LKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSS 118 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~ 118 (555)
-..+...++.+|...|....+...++++++..-.
T Consensus 76 -~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 76 -SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 2457889999999999998888888998887643
No 106
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.38 E-value=0.046 Score=46.86 Aligned_cols=108 Identities=8% Similarity=0.057 Sum_probs=84.4
Q ss_pred hhHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcc
Q 008745 2 EAVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSC 81 (555)
Q Consensus 2 ~~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~ 81 (555)
...+.+.-.|...+-..+++..||.|++-++...|. .+.+...+|.+++ ...+.++|...+++|..+-...+..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-----~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-----NITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchh
Confidence 345666677888888999999999999999987652 2456677887765 4789999999999998776655555
Q ss_pred hhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHH
Q 008745 82 FELKCRTFSLLSQCYHLVGAIPPQKLILYKALDL 115 (555)
Q Consensus 82 ~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~ 115 (555)
......++.-++.+|...|....+.....|+++.
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666778889999999999887666666777664
No 107
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.36 E-value=0.061 Score=43.53 Aligned_cols=100 Identities=14% Similarity=0.034 Sum_probs=79.9
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
-+..+..+|..+...+++..|+.+++.+++..+ . . +.+...+|.+++ ...+.++|...++++..+ -|..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~-~--~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~---~~~~-- 79 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP--A-N--AVYFCNRAAAYS-KLGNYAGAVQDCERAICI---DPAY-- 79 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T-C--HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---CTTC--
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--C-C--HHHHHHHHHHHH-HhhchHHHHHHHHHHHhc---CccC--
Confidence 456788999999999999999999999998755 1 1 456778888774 578999999999999654 2222
Q ss_pred hhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHh
Q 008745 84 LKCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s 116 (555)
..+...++++|...|....+...+.++++..
T Consensus 80 --~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 80 --SKAYGRMGLALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 4567899999999999888877778888764
No 108
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.31 E-value=0.039 Score=45.64 Aligned_cols=87 Identities=9% Similarity=0.050 Sum_probs=69.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 008745 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (555)
Q Consensus 414 ~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnl 493 (555)
++.+....++|++|.+.+.++.+ .+|.- ...+...+.+|......|++++|...|..+++...+.+...-+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~---~~p~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLE---LYPNG--VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCSSS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH---HCCCC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 45667789999999998777654 45542 13356888999999999999999999999999877766666677788
Q ss_pred HHHHhhcCCccc
Q 008745 494 AVSYFCIGDAES 505 (555)
Q Consensus 494 Ai~yL~~g~~~s 505 (555)
+.+|...|+.+.
T Consensus 83 a~~~~~~g~~~~ 94 (129)
T 2xev_A 83 GLSQYGEGKNTE 94 (129)
T ss_dssp HHHHHHTTCHHH
T ss_pred HHHHHHcCCHHH
Confidence 999999888654
No 109
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.29 E-value=0.078 Score=46.55 Aligned_cols=108 Identities=14% Similarity=0.024 Sum_probs=79.8
Q ss_pred hhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhh
Q 008745 40 PIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSA 119 (555)
Q Consensus 40 P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~ 119 (555)
+...+.+...+|.+++ ...+.++|..+++++..+- |.. ..++..++.+|.+.|....+...+.++++..-.
T Consensus 7 ~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~---p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~- 77 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIA---PAN----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK- 77 (164)
T ss_dssp CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHS---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred hhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC---CcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Confidence 3456777888888776 4678889999998886542 221 456788999999999887777777888775321
Q ss_pred hcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCC
Q 008745 120 SQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISY 165 (555)
Q Consensus 120 ~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~ 165 (555)
.....+.++.++...||+..|+..+++...+.-.+..
T Consensus 78 ---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 78 ---------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred ---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 1234467888999999999999999998887755544
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.27 E-value=0.11 Score=41.75 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=76.0
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008745 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (555)
Q Consensus 351 vi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~ 430 (555)
+......|.+++|.++++++++. .+. + ...| . +++.+....+++++|.+.
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~----------~~~----~---~~~~-----~--------~~a~~~~~~~~~~~A~~~ 57 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALEL----------DPR----S---AEAW-----Y--------NLGNAYYKQGDYDEAIEY 57 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH----------CTT----C---HHHH-----H--------HHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHc----------CCc----c---hhHH-----H--------HHHHHHHHhcCHHHHHHH
Confidence 33344568899999988877654 111 0 1122 1 124445567899999999
Q ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCccc
Q 008745 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES 505 (555)
Q Consensus 431 l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s 505 (555)
+.++.+. .|.. +...+..|......|++++|...|..+++...+.. .+..+++.+|...|+.+.
T Consensus 58 ~~~~~~~---~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~ 121 (136)
T 2fo7_A 58 YQKALEL---DPRS-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---EAWYNLGNAYYKQGDYDE 121 (136)
T ss_dssp HHHHHHH---CTTC-----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHH---CCCc-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHccHHH
Confidence 8887665 3432 34567789999999999999999999988765432 233456777877777553
No 111
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.24 E-value=0.086 Score=46.18 Aligned_cols=107 Identities=13% Similarity=0.057 Sum_probs=75.5
Q ss_pred HHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCC-----------cchhhhhhHHHHHHHHHHHcCCCchHhHHHHH
Q 008745 43 EVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIP-----------SCFELKCRTFSLLSQCYHLVGAIPPQKLILYK 111 (555)
Q Consensus 43 EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~-----------~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k 111 (555)
.|..-...|..+|. ..+.++|..++++|..++...+ ........++.-+|.||.+.|....+.....+
T Consensus 10 ~a~~~~~~G~~~~~-~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 10 SVEALRQKGNELFV-QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34455556665554 5677788888888766543221 11456678899999999999988777676778
Q ss_pred HHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHH
Q 008745 112 ALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA 160 (555)
Q Consensus 112 ~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A 160 (555)
+|+.--. ....++.++.++...|++..|+..++++..+.
T Consensus 89 al~~~p~----------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 89 VLKREET----------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHSTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCCc----------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 7775211 12345678999999999999999999977663
No 112
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.24 E-value=0.048 Score=47.98 Aligned_cols=103 Identities=10% Similarity=-0.028 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008745 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (555)
Q Consensus 344 aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~ 423 (555)
+-.++.-+......|.+++|.++++++++. .|. +...| -+++.+..-.++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~-------~~~~~-------------~~l~~~~~~~g~ 60 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI----------APA-------NPIYL-------------SNRAAAYSASGQ 60 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------STT-------CHHHH-------------HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCc-------CHHHH-------------HHHHHHHHHccC
Confidence 344555566677889999999999998875 222 01122 234666777899
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh
Q 008745 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (555)
Q Consensus 424 ~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~ 484 (555)
+++|.+.+.++.+. .|.. +..++.+|......|++++|...|..++++..+..
T Consensus 61 ~~~A~~~~~~al~~---~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 61 HEKAAEDAELATVV---DPKY-----SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 99999998877765 3442 45678999999999999999999999998875553
No 113
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.23 E-value=0.031 Score=62.18 Aligned_cols=146 Identities=14% Similarity=0.032 Sum_probs=109.9
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+.++..+|..+...+++..|+.+++.+++..|. .+.++..+|.+++ ...+.++|..++++|..+ -|..
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l---~P~~--- 500 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGW-----RWRLVWYRAVAEL-LTGDYDSATKHFTEVLDT---FPGE--- 500 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH---STTC---
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-----hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh---CCCC---
Confidence 356788899999999999999999999987651 2567788888876 578999999999999654 2333
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhC
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~ 164 (555)
..++..|+.+|.+.|.... ...++++++.--.. . ...+.++.++...||++.|++.+++..++.
T Consensus 501 -~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~------~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---- 564 (681)
T 2pzi_A 501 -LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV------I----SAAFGLARARSAEGDRVGAVRTLDEVPPTS---- 564 (681)
T ss_dssp -SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC------H----HHHHHHHHHHHHTTCHHHHHHHHHTSCTTS----
T ss_pred -hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch------H----HHHHHHHHHHHHcCCHHHHHHHHHhhcccC----
Confidence 4566789999999999987 77889988864321 1 233678999999999999999999865443
Q ss_pred ChhHHHHHHHHHHH
Q 008745 165 YPDLQMFFATAILH 178 (555)
Q Consensus 165 ~~~~~v~fals~~~ 178 (555)
.......+.++.++
T Consensus 565 P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 565 RHFTTARLTSAVTL 578 (681)
T ss_dssp TTHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHH
Confidence 22344445555444
No 114
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.22 E-value=0.31 Score=46.02 Aligned_cols=141 Identities=15% Similarity=0.126 Sum_probs=86.9
Q ss_pred HHHHHhHHHHHh----hccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhh---cCChHHHHHHHHHHHHHHhcC
Q 008745 6 EGLWGLADYHEN----KGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKH---THNVNHAKSHLERSQLLLKAI 78 (555)
Q Consensus 6 ~~Ll~lAe~fr~----~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~---T~N~~~AkthLEka~~l~k~i 78 (555)
.++..|+..+.. .+++..|+.+++.+++.. .+.+...+|.+++.- ..|.++|..++++|..+
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---- 107 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---- 107 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----
Confidence 455667777777 778888888888877653 234556677766541 67788888888887543
Q ss_pred CcchhhhhhHHHHHHHHHHH----cCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhh----cCChHHHH
Q 008745 79 PSCFELKCRTFSLLSQCYHL----VGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFII----EGDYQSSI 150 (555)
Q Consensus 79 ~~~~dlK~~a~sLLa~~y~~----~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~----~~D~~~A~ 150 (555)
+ -..+...|+.+|.. .+....+...++++++.-. . .-.+.++.++.. .+|+..|+
T Consensus 108 ~-----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------~-----~a~~~lg~~~~~~~~~~~~~~~A~ 170 (273)
T 1ouv_A 108 K-----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND-------G-----DGCTILGSLYDAGRGTPKDLKKAL 170 (273)
T ss_dssp T-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-------H-----HHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred C-----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc-------H-----HHHHHHHHHHHcCCCCCCCHHHHH
Confidence 1 13566777777777 6666666666677776320 0 112345555555 67777777
Q ss_pred HHHhhHHHHHhhhCChhHHHHHHHHHHHHH
Q 008745 151 SALQSGYVCATEISYPDLQMFFATAILHVH 180 (555)
Q Consensus 151 ~~L~~g~~~A~~~~~~~~~v~fals~~~~~ 180 (555)
..+++.++. +++ ...+.++.++..
T Consensus 171 ~~~~~a~~~----~~~--~a~~~lg~~~~~ 194 (273)
T 1ouv_A 171 ASYDKACDL----KDS--PGCFNAGNMYHH 194 (273)
T ss_dssp HHHHHHHHT----TCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHC----CCH--HHHHHHHHHHHc
Confidence 777765533 332 444555555554
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.21 E-value=0.056 Score=48.84 Aligned_cols=124 Identities=13% Similarity=0.134 Sum_probs=86.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 008745 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (555)
Q Consensus 414 ~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnl 493 (555)
.+.+....++|++|.+.+.+.. .| .+.+.+.+|......|++++|...|..|++...+. ..+-.|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~-----~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l 77 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ-----DP------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---AVAYFQR 77 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS-----SC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHc-----CC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHH
Confidence 4666778999999999876652 12 35688999999999999999999999999875433 2455678
Q ss_pred HHHHhhcCCccc----HHHHHHhhCccccccc-cccch---hHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 494 AVSYFCIGDAES----SSQAIDLIGPVYQMKD-TINGV---REEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 494 Ai~yL~~g~~~s----~~~aL~li~P~~~~~~-~~~~~---~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
+.+|...|+.+. +.+++++ .|...... ...|+ ...+.+++-.|...+.+|++++|...
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALIQ-LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT-TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHh-CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHH
Confidence 889988888543 5556653 33211000 00000 01346789999999999999999764
No 116
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.054 Score=45.17 Aligned_cols=97 Identities=11% Similarity=-0.027 Sum_probs=72.7
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Q 008745 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (555)
Q Consensus 346 vyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~ 425 (555)
.++--+......|.+++|.++++++++. .|. ....| -+++.+....++|+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~----------~p~-------~~~~~-------------~~~a~~~~~~~~~~ 55 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR----------APE-------DARGY-------------SNRAAALAKLMSFP 55 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT-------CHHHH-------------HHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh----------CCC-------ChHHH-------------HHHHHHHHHhcCHH
Confidence 3445566667889999999999988875 222 01122 23466677789999
Q ss_pred HHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 008745 426 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 480 (555)
Q Consensus 426 ~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t 480 (555)
+|.+.+.++.+. .|.. +..++.+|......|++++|...|..++++.
T Consensus 56 ~A~~~~~~al~~---~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 56 EAIADCNKAIEK---DPNF-----VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCc-----HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 999998877665 4443 4567889999999999999999999998876
No 117
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.17 E-value=0.061 Score=47.38 Aligned_cols=98 Identities=15% Similarity=-0.006 Sum_probs=76.7
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
...+.||.-+...+++..|+.+++-+++..|.. +.++..+|.+++ ...|.++|..+++++..+ -|+.
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~---~p~~---- 98 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-----PKAHRFLGLLYE-LEENTDKAVECYRRSVEL---NPTQ---- 98 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---CTTC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH-HcCchHHHHHHHHHHHHh---CCCC----
Confidence 345788999999999999999999999887622 456788888765 578999999999999654 2333
Q ss_pred hhHHHHHHHHHHHcCCC-chHhHHHHHHHHHh
Q 008745 86 CRTFSLLSQCYHLVGAI-PPQKLILYKALDLT 116 (555)
Q Consensus 86 ~~a~sLLa~~y~~~~~~-~~~k~~L~k~i~~s 116 (555)
..+...|+.+|.+.|.. .+++..+.+++++-
T Consensus 99 ~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 99 KDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 34678899999999987 45666678888863
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.16 E-value=0.12 Score=44.18 Aligned_cols=117 Identities=14% Similarity=0.124 Sum_probs=82.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 008745 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 492 (555)
Q Consensus 413 ~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~ln 492 (555)
+++.+....++|++|.+.+.+..+. .|.. +.+.+..|......|++++|...|..+++...+. ..+..+
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~---~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~ 86 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIEL---NPSN-----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYR 86 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---STTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh---CCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHH
Confidence 3466778899999999998877764 3432 4567788999999999999999999999875443 234566
Q ss_pred HHHHHhhcCCccc----HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhh
Q 008745 493 AAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARL 551 (555)
Q Consensus 493 lAi~yL~~g~~~s----~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~ 551 (555)
++.+|...|+.+. +.++++ +.|. .. .+...+..+...+.+|++++|..
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~-~~p~------~~----~~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVK-VKPH------DK----DAKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-HSTT------CH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH-hCCC------CH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888553 455554 2442 11 22234555666777888888864
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.15 E-value=0.34 Score=47.30 Aligned_cols=153 Identities=13% Similarity=-0.026 Sum_probs=104.2
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
...++.+|..+...|++..|+..++.+++..|. . +.+++-+|.+++ ...+.++|..+|+++.. .-|...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~--~~a~~~la~~~~-~~g~~~~A~~~l~~~~~---~~p~~~-- 185 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---N--GEIGLLLAETLI-ALNRSEDAEAVLXTIPL---QDQDTR-- 185 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---C--HHHHHHHHHHHH-HTTCHHHHHHHHTTSCG---GGCSHH--
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---c--hhHHHHHHHHHH-HCCCHHHHHHHHHhCch---hhcchH--
Confidence 467889999999999999999999999987652 2 356888898766 56899999999977632 122211
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhC
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~ 164 (555)
.....+.-.+...+....+...++++++..-. ....++.+|.++...|++..|+..++......-..+
T Consensus 186 --~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~----------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 186 --YQGLVAQIELLXQAADTPEIQQLQQQVAENPE----------DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp --HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred --HHHHHHHHHHHhhcccCccHHHHHHHHhcCCc----------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 12222333355555555555566777764321 113557789999999999999999999776543332
Q ss_pred ChhHHHHHHHHHHHHHhc
Q 008745 165 YPDLQMFFATAILHVHLM 182 (555)
Q Consensus 165 ~~~~~v~fals~~~~~L~ 182 (555)
+ ..+...+..+...+-
T Consensus 254 ~--~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 254 D--GQTRXTFQEILAALG 269 (287)
T ss_dssp G--GHHHHHHHHHHHHHC
T ss_pred c--chHHHHHHHHHHHcC
Confidence 2 344566666666554
No 120
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.11 E-value=0.29 Score=50.81 Aligned_cols=153 Identities=5% Similarity=-0.033 Sum_probs=113.9
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+.++..++.-+...++...|+.|++.+++..|. -+.+...+|.+|..--++.++|...+++|..+ -|.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-----~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l---~P~---- 164 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-----NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---QPK---- 164 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CTT----
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-----CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH---CCC----
Confidence 455666777788889999999999999987652 23457778888887766799999999999543 233
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhC
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~ 164 (555)
-+.+++.++.+|...|....+...++|+|+.--. . ...| +.++.++...|++..|+..+++...+.-.
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~---~--~~a~-----~~lg~~~~~~g~~~eAl~~~~~al~l~P~-- 232 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK---N--YHAW-----QHRQWVIQEFKLWDNELQYVDQLLKEDVR-- 232 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---C--HHHH-----HHHHHHHHHHTCCTTHHHHHHHHHHHCTT--
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---C--HHHH-----HHHHHHHHHcCChHHHHHHHHHHHHhCCC--
Confidence 2567889999999999998888888999886422 1 1234 45777788889999999999997765432
Q ss_pred ChhHHHHHHHHHHHHHhcc
Q 008745 165 YPDLQMFFATAILHVHLMQ 183 (555)
Q Consensus 165 ~~~~~v~fals~~~~~L~~ 183 (555)
...+.+.+..++..+..
T Consensus 233 --~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 233 --NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp --CHHHHHHHHHHHHHTTC
T ss_pred --CHHHHHHHHHHHHHhcC
Confidence 34556667777666543
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.07 E-value=0.039 Score=48.83 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=81.0
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCCh--HHHHHHHHHHHHHHhcCCcch
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNV--NHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~--~~AkthLEka~~l~k~i~~~~ 82 (555)
..++..+|..+...+++..|+.+++.+++..|. .+.+...+|.+|+....+. ++|...++++..+ -|..
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~---~p~~- 114 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-----NAELYAALATVLYYQASQHMTAQTRAMIDKALAL---DSNE- 114 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-----CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---CTTC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---CCCc-
Confidence 457788999999999999999999999987652 1456788999988888887 9999999999654 2332
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHh
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s 116 (555)
..+...|+.+|...|....+...+.++++..
T Consensus 115 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 115 ---ITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 3567789999999999888877778887754
No 122
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.13 Score=42.73 Aligned_cols=101 Identities=13% Similarity=0.055 Sum_probs=68.9
Q ss_pred HHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcc
Q 008745 43 EVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122 (555)
Q Consensus 43 EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~ 122 (555)
.|......|..++ ...+.++|...++++..+- |.. ..+...++.+|.+.|....+...+.++++..-.
T Consensus 3 ~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~---p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---- 70 (126)
T 3upv_A 3 KAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRA---PED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---- 70 (126)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred hHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhC---CCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----
Confidence 3455566666555 3567777777777775431 221 356778888888888877676666777765321
Q ss_pred cccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHh
Q 008745 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCAT 161 (555)
Q Consensus 123 ~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~ 161 (555)
.....+.++.++...|++..|+..++++..+..
T Consensus 71 ------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 71 ------FVRAYIRKATAQIAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCc
Confidence 123456788888889999999999998887763
No 123
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.02 E-value=0.065 Score=42.63 Aligned_cols=98 Identities=12% Similarity=0.073 Sum_probs=77.9
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+..+..+|..+...+++..|+.+++.+++..| . .+.+...+|.+++ ...+.++|...++++..+ -|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~---~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~---~~~~--- 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP--H---NHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDL---KPDW--- 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH---CTTC---
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--C---cHHHHHHHHHHHH-hhccHHHHHHHHHHHHHh---Cccc---
Confidence 56788999999999999999999999998765 1 1446778888765 478999999999999654 2222
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHH
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDL 115 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~ 115 (555)
......++.+|...|....+...+.++++.
T Consensus 72 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 72 -GKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 356788999999999887777777777764
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.00 E-value=0.068 Score=43.76 Aligned_cols=101 Identities=15% Similarity=0.087 Sum_probs=80.7
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~ 82 (555)
....++..+|..+...+++..|+.+++.+++..+. .+.+...+|.++ ....+.++|...++++..+ -|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~---~~~-- 82 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-----DAKLYSNRAACY-TKLLEFQLALKDCEECIQL---EPT-- 82 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-----CHHHHHHHHHHH-TTTTCHHHHHHHHHHHHHH---CTT--
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHH-HHhccHHHHHHHHHHHHHh---CCC--
Confidence 34678889999999999999999999999987541 156678888876 5578999999999999654 222
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHh
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s 116 (555)
...+...++.+|...|....+...+.++++..
T Consensus 83 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 83 --FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 24567889999999999888888888888764
No 125
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.00 E-value=0.043 Score=49.06 Aligned_cols=152 Identities=16% Similarity=0.082 Sum_probs=102.3
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
..++.+|..+...|++..|+.+++.+++..|. . +.++..+|.+++ .+.+.++|..+++++.. .-| ..+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~--~~a~~~la~~~~-~~g~~~~A~~~~~~a~~---~~p-~~~-- 74 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQS---R--GDVKLAKADCLL-ETKQFELAQELLATIPL---EYQ-DNS-- 74 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT---S--HHHHHHHHHHHH-HTTCHHHHHHHHTTCCG---GGC-CHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---c--HHHHHHHHHHHH-HCCCHHHHHHHHHHhhh---ccC-ChH--
Confidence 35778899999999999999999999976541 1 456788888765 67899999999988732 222 112
Q ss_pred hhHHHHHHHHHH-HcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhC
Q 008745 86 CRTFSLLSQCYH-LVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (555)
Q Consensus 86 ~~a~sLLa~~y~-~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~ 164 (555)
...+++.+.. ..+....+...++++++..-. ....++.++.++...|++..|+..+++.....-...
T Consensus 75 --~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 142 (176)
T 2r5s_A 75 --YKSLIAKLELHQQAAESPELKRLEQELAANPD----------NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ 142 (176)
T ss_dssp --HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT
T ss_pred --HHHHHHHHHHHhhcccchHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC
Confidence 2334444432 222333345567887774321 123446789999999999999999999888875544
Q ss_pred ChhHHHHHHHHHHHHHhcc
Q 008745 165 YPDLQMFFATAILHVHLMQ 183 (555)
Q Consensus 165 ~~~~~v~fals~~~~~L~~ 183 (555)
++ .+.+.+..++..+-+
T Consensus 143 ~~--~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 143 DG--EVKKTFMDILSALGQ 159 (176)
T ss_dssp TT--HHHHHHHHHHHHHCS
T ss_pred hH--HHHHHHHHHHHHhCC
Confidence 43 344556666666654
No 126
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.95 E-value=0.1 Score=47.37 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=75.7
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCCh-----------hHHHHHHHHhhHHHHhhcCChHHHHHHHHHH
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLP-----------IIEVKTRLRISTLLLKHTHNVNHAKSHLERS 71 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P-----------~~EA~~rLrla~lL~e~T~N~~~AkthLEka 71 (555)
..+..+..+|..+...+++..|+.+++-+++..+.-+. ...+.+...+|.+++ ...+.++|..+++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence 35678889999999999999999999999975442221 112466777777765 567888888888888
Q ss_pred HHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHh
Q 008745 72 QLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (555)
Q Consensus 72 ~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s 116 (555)
..+ -|. -..+...++.+|...|....+...+.++++..
T Consensus 115 l~~---~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 115 LKI---DKN----NVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHH---STT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHh---Ccc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 654 122 13467778888888888777777777777653
No 127
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.92 E-value=0.083 Score=44.09 Aligned_cols=100 Identities=10% Similarity=-0.063 Sum_probs=73.5
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 008745 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (555)
Q Consensus 345 Lvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~ 424 (555)
-.++.-+......|.+++|.++++++++. .|. +...| -+++.+....++|
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------~~~-------~~~~~-------------~~l~~~~~~~~~~ 59 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR----------NPL-------VAVYY-------------TNRALCYLKMQQP 59 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT-------CHHHH-------------HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh----------CcC-------cHHHH-------------HHHHHHHHHhcCH
Confidence 34455566667889999999999888875 222 01122 2236667779999
Q ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 425 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 425 ~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
++|.+.+.++.+. .|.. +...+.+|......|++++|...|..+++...+
T Consensus 60 ~~A~~~~~~al~~---~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 60 EQALADCRRALEL---DGQS-----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---Cchh-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 9999888777665 4442 457889999999999999999999999877543
No 128
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.90 E-value=0.03 Score=44.37 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=75.6
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
..+..+|..+...+++..|+.+++.+++..+ . . +.+...+|.+++ ...+.++|..+++++..+ -|. +..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~-~--~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~---~~~--~~~ 75 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--E-E--SKYWLMKGKALY-NLERYEEAVDCYNYVINV---IED--EYN 75 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--C-C--HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHT---SCC--TTC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--C-C--HHHHHHHHHHHH-HccCHHHHHHHHHHHHHh---Ccc--cch
Confidence 3456788888999999999999999998765 1 1 346677887765 568999999999999543 333 234
Q ss_pred hhHHHHHHHHHHHc-CCCchHhHHHHHHHHH
Q 008745 86 CRTFSLLSQCYHLV-GAIPPQKLILYKALDL 115 (555)
Q Consensus 86 ~~a~sLLa~~y~~~-~~~~~~k~~L~k~i~~ 115 (555)
..+...++.+|.+. |....+...++++++.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 56788999999999 9888777776776653
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.86 E-value=0.22 Score=39.73 Aligned_cols=103 Identities=19% Similarity=0.218 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhh
Q 008745 39 LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSS 118 (555)
Q Consensus 39 ~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~ 118 (555)
.|...+.+...+|.+++. ..+.++|..+++++... -|.. ..+...++.+|...|....+...+.++++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~---~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYK-QGDYDEAIEYYQKALEL---DPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp ---CHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH---CTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH---CcCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 455556777788876554 67899999999888643 1221 346778899999999887777777787765321
Q ss_pred hhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHH
Q 008745 119 ASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (555)
Q Consensus 119 ~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~ 159 (555)
. -...+.++.++...||+..|...++.+...
T Consensus 76 -------~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 76 -------N---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp -------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------c---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 1 123356788888899999999999886654
No 130
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.85 E-value=0.49 Score=46.16 Aligned_cols=167 Identities=7% Similarity=0.014 Sum_probs=89.7
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhh
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~ 86 (555)
....+|+..+..+++..|+.+++-+++..|. .| + .+.+.+|.++. ...+.++|+..+++|.. .-|.. .
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~--~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~---~~p~~----~ 168 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DP--T-LVYIQYMKFAR-RAEGIKSGRMIFKKARE---DARTR----H 168 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CT--H-HHHHHHHHHHH-HHHCHHHHHHHHHHHHT---STTCC----T
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-Cc--c-HHHHHHHHHHH-HhcCHHHHHHHHHHHHh---cCCCC----H
Confidence 3445666667777788888888888765431 11 1 26677776654 35677788888877742 22222 2
Q ss_pred hHHHHHHHHHHH-cCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCC
Q 008745 87 RTFSLLSQCYHL-VGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISY 165 (555)
Q Consensus 87 ~a~sLLa~~y~~-~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~ 165 (555)
..+...+.+... .|....+..++.++++.-- .. ...| ..++.+....||+..|...++.+..... -+
T Consensus 169 ~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p---~~--~~~~-----~~~~~~~~~~g~~~~A~~~~~~al~~~~--l~ 236 (308)
T 2ond_A 169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYG---DI--PEYV-----LAYIDYLSHLNEDNNTRVLFERVLTSGS--LP 236 (308)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT---TC--HHHH-----HHHHHHHHTTCCHHHHHHHHHHHHHSSS--SC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---Cc--HHHH-----HHHHHHHHHCCCHHHHHHHHHHHHhccC--CC
Confidence 222233333222 4555556666677666421 11 1233 4556666677888888888877554210 01
Q ss_pred h--hHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHH
Q 008745 166 P--DLQMFFATAILHVHLMQWDDENSVLRSINQCDRV 200 (555)
Q Consensus 166 ~--~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l 200 (555)
| ...+....+...... .+.+.+.....++.++
T Consensus 237 p~~~~~l~~~~~~~~~~~---g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNI---GDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH
Confidence 1 234444444444433 3445555554444433
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.83 E-value=0.14 Score=44.98 Aligned_cols=98 Identities=9% Similarity=-0.061 Sum_probs=71.7
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 008745 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 426 (555)
Q Consensus 347 yllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~ 426 (555)
++--+......|.+++|.+++++++.. .|. +...| -+++.+....++|++
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~-------~~~~~-------------~~lg~~~~~~g~~~~ 73 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVL----------DHY-------DSRFF-------------LGLGACRQAMGQYDL 73 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT-------CHHHH-------------HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc----------Ccc-------cHHHH-------------HHHHHHHHHHhhHHH
Confidence 334466667789999999998877664 222 12233 123566777899999
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 427 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 427 A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
|.+.+..+.+.- |.- +..++-+|......|++++|...|..|+++..+
T Consensus 74 A~~~~~~al~l~---p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 74 AIHSYSYGAVMD---IXE-----PRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHHHHHS---TTC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC---CCC-----chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 999988876653 432 345688899999999999999999999987754
No 132
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.99 Score=47.97 Aligned_cols=189 Identities=13% Similarity=0.074 Sum_probs=124.7
Q ss_pred cHHHHHHHHHHhhc--cCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch-hhhhhHHHHHHHHH
Q 008745 20 EIGKAVKCLEAICQ--SHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF-ELKCRTFSLLSQCY 96 (555)
Q Consensus 20 ~i~~ai~CLeAvl~--~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~-dlK~~a~sLLa~~y 96 (555)
+..+-++|.+.+-. ....+.-..-||.+.+||+++++. .+..+|-..|..-..=..+ .++ ..|.+.+-..+|+|
T Consensus 111 d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~-g~~~eA~~iL~~l~~Et~~--~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 111 DLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEE-GKIDEAADILCELQVETYG--SMEMSEKIQFILEQMELS 187 (445)
T ss_dssp HHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHCS--SSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHH
Confidence 44455566655432 222245566799999999997775 7788888887655433333 333 78999999999999
Q ss_pred HHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChh--HHHHHHH
Q 008745 97 HLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPD--LQMFFAT 174 (555)
Q Consensus 97 ~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~--~~v~fal 174 (555)
...+.+..++.+++|+-.... +.++++.-.-.|..+.+.++..++||..|.+.....+......+++. ..++..+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~---~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTF---KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHI 264 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhc---ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 999999888888888654333 23445555667778899999999999999999998888888888864 3334443
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHH
Q 008745 175 AILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFY 226 (555)
Q Consensus 175 s~~~~~L~~~~~~~~v~~~l~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy 226 (555)
.-+.+.. ...+.....+++.. .+ .....++.|+++++.|.
T Consensus 265 v~~~iLa---~~~~~~~~ll~~~~-------~~--~~~~~l~~~~~L~k~f~ 304 (445)
T 4b4t_P 265 VYFLVLS---PYGNLQNDLIHKIQ-------ND--NNLKKLESQESLVKLFT 304 (445)
T ss_dssp HHHHHHS---SCSSTTHHHHHSHH-------HH--SSCHHHHHHHHHHHHHH
T ss_pred HHHHHhC---CCCchHHHHHHHHh-------hc--ccccccHHHHHHHHHHH
Confidence 3333322 22222222222211 11 13456777888888887
No 133
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.81 E-value=0.11 Score=41.28 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=68.6
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 008745 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 427 (555)
Q Consensus 348 llsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A 427 (555)
+.-+......|.+++|.++++++++. .|. + ...| -+++.+....+++++|
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~----------~~~----~---~~~~-------------~~~a~~~~~~~~~~~A 57 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKL----------DPH----N---HVLY-------------SNRSAAYAKKGDYQKA 57 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT----C---HHHH-------------HHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH----------CCC----c---HHHH-------------HHHHHHHHhhccHHHH
Confidence 33455556789999999999888764 221 0 1122 1124455667999999
Q ss_pred HHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh
Q 008745 428 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (555)
Q Consensus 428 ~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~ 483 (555)
.+.+.++.+. .|.. +...+..|......|++++|...|..+++...+.
T Consensus 58 ~~~~~~~~~~---~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 58 YEDGCKTVDL---KPDW-----GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHh---Cccc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 9988777665 4432 4567888999999999999999999998775443
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.80 E-value=0.038 Score=47.08 Aligned_cols=95 Identities=13% Similarity=0.002 Sum_probs=73.9
Q ss_pred HHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhh
Q 008745 8 LWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCR 87 (555)
Q Consensus 8 Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~ 87 (555)
++.+|..+...+++..|+.+++.+++..|. . +.+...+|.+++ ...+.++|..++++|..+ -|... .
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~--~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l---~P~~~----~ 86 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE---R--EEAWRSLGLTQA-ENEKDGLAIIALNHARML---DPKDI----A 86 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---C--HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---CTTCH----H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---C--HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh---CCCCH----H
Confidence 567788888999999999999999987652 2 445677888766 578999999999999654 33433 4
Q ss_pred HHHHHHHHHHHcCCCchHhHHHHHHHHH
Q 008745 88 TFSLLSQCYHLVGAIPPQKLILYKALDL 115 (555)
Q Consensus 88 a~sLLa~~y~~~~~~~~~k~~L~k~i~~ 115 (555)
+...|+.+|...|....+...++++++.
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6789999999999887777777777664
No 135
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=95.78 E-value=2.2 Score=44.28 Aligned_cols=142 Identities=8% Similarity=-0.008 Sum_probs=97.3
Q ss_pred HHHHHHhHHHHHh----hccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHh---hcCChHHHHHHHHHHHHHHhc
Q 008745 5 AEGLWGLADYHEN----KGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLK---HTHNVNHAKSHLERSQLLLKA 77 (555)
Q Consensus 5 ~~~Ll~lAe~fr~----~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e---~T~N~~~AkthLEka~~l~k~ 77 (555)
+.+++.|+..+.. .+++..|+.+++.+++... +.+...||.+++. -..|.++|...+++|... +
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 109 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGY-------TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G 109 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 4567777777777 7799999999998887532 3467778887766 278899999999998642 1
Q ss_pred CCcchhhhhhHHHHHHHHHHH----cCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhh----cCChHHH
Q 008745 78 IPSCFELKCRTFSLLSQCYHL----VGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFII----EGDYQSS 149 (555)
Q Consensus 78 i~~~~dlK~~a~sLLa~~y~~----~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~----~~D~~~A 149 (555)
--.++..|+.+|.. .+....+...++++++.- .+ .-.+.++.++.. .+|+..|
T Consensus 110 -------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~------~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 110 -------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG------RD------SGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp -------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CH------HHHHHHHHHHHHTSSSCCCHHHH
T ss_pred -------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CH------HHHHHHHHHHHcCCCCCCCHHHH
Confidence 12567789999988 444455666677777641 11 123446666665 7899999
Q ss_pred HHHHhhHHHHHhhhCChhHHHHHHHHHHHHH
Q 008745 150 ISALQSGYVCATEISYPDLQMFFATAILHVH 180 (555)
Q Consensus 150 ~~~L~~g~~~A~~~~~~~~~v~fals~~~~~ 180 (555)
++.+++.++. |++ ...+.+...+..
T Consensus 171 ~~~~~~a~~~----~~~--~a~~~Lg~~y~~ 195 (490)
T 2xm6_A 171 REWYSKAAEQ----GNV--WSCNQLGYMYSR 195 (490)
T ss_dssp HHHHHHHHHT----TCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHC----CCH--HHHHHHHHHHhc
Confidence 9988886542 543 455666665554
No 136
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.78 E-value=0.07 Score=46.02 Aligned_cols=94 Identities=7% Similarity=-0.042 Sum_probs=68.7
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Q 008745 350 VVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQE 429 (555)
Q Consensus 350 svi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~ 429 (555)
-+......|.+++|.++++++++. .|. +...| -+++.+....+++++|.+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~----------~p~-------~~~~~-------------~~lg~~~~~~g~~~~A~~ 73 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCML----------DHY-------DARYF-------------LGLGACRQSLGLYEQALQ 73 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----------CTT-------CHHHH-------------HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHh----------CCc-------cHHHH-------------HHHHHHHHHHhhHHHHHH
Confidence 355566789999999998877764 222 12233 123556677899999999
Q ss_pred HHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 008745 430 ALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (555)
Q Consensus 430 ~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~ 481 (555)
.+..+.+.- |.- +..++.+|......|++++|...|..+++...
T Consensus 74 ~~~~al~~~---p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 74 SYSYGALMD---INE-----PRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHHC---TTC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC---CCC-----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 988777653 432 34568899999999999999999999988764
No 137
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.77 E-value=0.19 Score=41.96 Aligned_cols=104 Identities=9% Similarity=-0.060 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008745 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (555)
Q Consensus 344 aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~ 423 (555)
+-.++.-+......|.+++|.++++++++. .|. ... ....+.+++.+..-.++
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----------~~~--------~~~---------~~~~~~~~a~~~~~~~~ 80 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL----------DAT--------PQD---------QAVLHRNRAACHLKLED 80 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS----------CCC--------HHH---------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----------ccc--------chH---------HHHHHHHHHHHHHHHcc
Confidence 344556677778899999999999887653 222 000 01112334666777899
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 424 ~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
|++|.+.+.+..+. .|.. +..++..|......|++++|...|..+++...+
T Consensus 81 ~~~A~~~~~~~~~~---~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 81 YDKAETEASKAIEK---DGGD-----VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHHHH---TSCC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhh---CccC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 99999988777665 4543 456788999999999999999999999987654
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.69 E-value=0.07 Score=48.09 Aligned_cols=101 Identities=14% Similarity=0.110 Sum_probs=81.9
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
-+.++..+|..+...|++..|+.+++.+++..|. .+.+...+|.+++ ...+.++|..++++|..+ -|..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-----~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l---~P~~-- 103 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-----NVDYIMGLAAIYQ-IKEQFQQAADLYAVAFAL---GKND-- 103 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---SSSC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH-HHccHHHHHHHHHHHHhh---CCCC--
Confidence 3567889999999999999999999999988652 2345777887665 678999999999999654 2333
Q ss_pred hhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhh
Q 008745 84 LKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTS 117 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~ 117 (555)
..++.-|+.+|.+.|....+...++++++..-
T Consensus 104 --~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 104 --YTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp --CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred --cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 24678899999999999888888899998763
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.65 E-value=0.35 Score=38.51 Aligned_cols=98 Identities=16% Similarity=0.127 Sum_probs=66.2
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 008745 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 427 (555)
Q Consensus 348 llsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A 427 (555)
+.-+......|.+++|.++++++++. .|. ....| -+++.+....+++++|
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~----------~~~-------~~~~~-------------~~la~~~~~~~~~~~A 62 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALEL----------DPN-------NAEAW-------------YNLGNAYYKQGDYDEA 62 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT-------CHHHH-------------HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH----------CcC-------cHHHH-------------HHHHHHHHHhCCHHHH
Confidence 33344555688999999988887664 111 01122 1124455667899999
Q ss_pred HHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh
Q 008745 428 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (555)
Q Consensus 428 ~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~ 483 (555)
.+.+.++.+. .|.. +...+..|......|++++|...|..+++...+.
T Consensus 63 ~~~~~~~~~~---~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 63 IEYYQKALEL---DPNN-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHh---CCcc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 9888777654 3432 3456678888889999999999999998775443
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.63 E-value=0.079 Score=53.59 Aligned_cols=122 Identities=10% Similarity=0.032 Sum_probs=82.5
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlA 494 (555)
+.+-...+++++|.+.+..+.. ..|. . . .+|++|+.++.+|++++|+..|..+.+.. .+...+-+.+|+.
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~---~~p~----~-~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG 178 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPV---AGSE----H-L-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHG 178 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCC---TTCH----H-H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh---cCCc----h-H-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHH
Confidence 4455668899999988544433 2232 1 2 88999999999999999999999665543 3334455778888
Q ss_pred HHHhhcCCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 495 VSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 495 i~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
.++-..|+.+..-..++.+.. .. .-... ..-+.|.+|+.+.++|+.+||+.+
T Consensus 179 ~al~~LG~~~eAl~~l~~a~~---g~-~~P~~--~~da~~~~glaL~~lGr~deA~~~ 230 (282)
T 4f3v_A 179 VAAANLALFTEAERRLTEAND---SP-AGEAC--ARAIAWYLAMARRSQGNESAAVAL 230 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT---ST-TTTTT--HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhc---CC-CCccc--cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888876542222222211 00 00011 234689999999999999999875
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.57 E-value=0.11 Score=44.73 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=80.4
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
-...+..+|..+...+++..|+.+++.+++..|. .+.+...+|.+++ .+.+.++|..+++++..+- |...
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~---p~~~- 86 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-----DARYFLGLGACRQ-SLGLYEQALQSYSYGALMD---INEP- 86 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC---TTCT-
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcC---CCCc-
Confidence 4567889999999999999999999999987652 2345667777764 6889999999999996542 3322
Q ss_pred hhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhh
Q 008745 84 LKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTS 117 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~ 117 (555)
.++..++.+|...|....+...+.++++..-
T Consensus 87 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 87 ---RFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3567899999999999888888889888754
No 142
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.52 E-value=0.28 Score=50.89 Aligned_cols=151 Identities=6% Similarity=-0.070 Sum_probs=98.2
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-H
Q 008745 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG-F 424 (555)
Q Consensus 346 vyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~-~ 424 (555)
+|..-.......|.+++|.+.++++++. -|. +-..| -++..+....++ +
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l----------~P~-------~~~a~-------------~~~g~~l~~~g~d~ 148 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL----------NAA-------NYTVW-------------HFRRVLLKSLQKDL 148 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH----------CTT-------CHHHH-------------HHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh----------Ccc-------CHHHH-------------HHHHHHHHHcccCH
Confidence 3344444456679999999999888775 232 12334 112333444675 9
Q ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcc
Q 008745 425 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 504 (555)
Q Consensus 425 ~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~ 504 (555)
++|++.+.++.+ ..|.- ..+++-+|......|++++|...|..|+++-.+.. -+-.|.+.+|...|+.+
T Consensus 149 ~eAl~~~~~al~---l~P~~-----~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~---~a~~~lg~~~~~~g~~~ 217 (382)
T 2h6f_A 149 HEEMNYITAIIE---EQPKN-----YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY---HAWQHRQWVIQEFKLWD 217 (382)
T ss_dssp HHHHHHHHHHHH---HCTTC-----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHH---HCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH---HHHHHHHHHHHHcCChH
Confidence 999888766655 44543 45678899999999999999999999998754432 23355677777777754
Q ss_pred c----HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHh-hcChhhhh
Q 008745 505 S----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR-QQDFQEAR 550 (555)
Q Consensus 505 s----~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~-q~~~~eAr 550 (555)
. +.++++ ++|- + ..+++-.|..++. .++++||.
T Consensus 218 eAl~~~~~al~-l~P~------~------~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 218 NELQYVDQLLK-EDVR------N------NSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp THHHHHHHHHH-HCTT------C------HHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHHHHHHHHHH-hCCC------C------HHHHHHHHHHHHHhcCcchHHH
Confidence 2 566665 4563 1 2346666777777 55557763
No 143
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.51 E-value=0.51 Score=43.74 Aligned_cols=145 Identities=10% Similarity=0.011 Sum_probs=96.7
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcC----ChHHHHHHHHHHHHHHhcCCc
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTH----NVNHAKSHLERSQLLLKAIPS 80 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~----N~~~AkthLEka~~l~k~i~~ 80 (555)
+.++..|+..+...+++..|+.+++-+++... +.+...||.+++. . |.++|...+++|.. . +
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~-------~~a~~~lg~~y~~--~g~~~~~~~A~~~~~~A~~---~--g 83 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD-------GDALALLAQLKIR--NPQQADYPQARQLAEKAVE---A--G 83 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHTTS--STTSCCHHHHHHHHHHHHH---T--T
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHH---C--C
Confidence 45677888888889999999999999997643 3567889999887 5 89999999999943 2 1
Q ss_pred chhhhhhHHHHHHHHHHHc----CCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhh----cCChHHHHHH
Q 008745 81 CFELKCRTFSLLSQCYHLV----GAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFII----EGDYQSSISA 152 (555)
Q Consensus 81 ~~dlK~~a~sLLa~~y~~~----~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~----~~D~~~A~~~ 152 (555)
--.+...|+.+|... +....+...++++++. .+.. -.-.=.+.++.++.. .+|+..|+..
T Consensus 84 ----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------~~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 84 ----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-------SESD-AAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp ----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-------TTSH-HHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred ----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-------CCCc-chHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 135788999999872 2223333334444332 1100 001122346666666 8899999999
Q ss_pred HhhHHHHHhhhCChhHHHHHHHHHHHHH
Q 008745 153 LQSGYVCATEISYPDLQMFFATAILHVH 180 (555)
Q Consensus 153 L~~g~~~A~~~~~~~~~v~fals~~~~~ 180 (555)
+++.++. .+++. ..+.+..++..
T Consensus 152 ~~~A~~~---~~~~~--a~~~Lg~~y~~ 174 (212)
T 3rjv_A 152 FKGSSSL---SRTGY--AEYWAGMMFQQ 174 (212)
T ss_dssp HHHHHHT---SCTTH--HHHHHHHHHHH
T ss_pred HHHHHHc---CCCHH--HHHHHHHHHHc
Confidence 9986543 24443 45666665544
No 144
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=95.45 E-value=0.13 Score=44.10 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=79.0
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcch
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~ 82 (555)
..++..-.++..+-..+++..||.|++-+++..|. .+.+...+|.+++ ...+.++|...+++|..+ -|..
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~---~p~~- 80 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-----NAILYSNRAACLT-KLMEFQRALDDCDTCIRL---DSKF- 80 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---CTTC-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHhhHHH-hhccHHHHHHHHHHHHHh---hhhh-
Confidence 34566667777888888999999999999987652 2456777787765 578999999999999654 2232
Q ss_pred hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHh
Q 008745 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s 116 (555)
..++..++.+|...|....+...+.++++.-
T Consensus 81 ---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 81 ---IKGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 4578899999999999988888888888863
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.44 E-value=0.28 Score=44.35 Aligned_cols=107 Identities=11% Similarity=0.042 Sum_probs=81.2
Q ss_pred HHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcc---------hhhhhhHHHHHHHHHHHcCCCchHhHHHHHHH
Q 008745 43 EVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSC---------FELKCRTFSLLSQCYHLVGAIPPQKLILYKAL 113 (555)
Q Consensus 43 EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~---------~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i 113 (555)
.+.....+|..++ ...+.++|...++++..+....+.+ .+++..+...++.+|.+.|....+...+.+++
T Consensus 37 ~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 37 SAFDIKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5667778887776 4689999999999997654443321 13456889999999999999887777778888
Q ss_pred HHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHH
Q 008745 114 DLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA 160 (555)
Q Consensus 114 ~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A 160 (555)
+..-. ....++.++.++...||+..|+..++++..+.
T Consensus 116 ~~~p~----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 116 KIDKN----------NVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHSTT----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HhCcc----------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 75321 12345678999999999999999999977653
No 146
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=95.44 E-value=0.17 Score=45.05 Aligned_cols=131 Identities=15% Similarity=0.060 Sum_probs=88.1
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
..++.++|.-+...|++..|+.+++.+++..| .|.. ..-++.+.+........|..+|+++.. --|+.
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~----~~~~~~~~~~~~~~~~~a~~~~~~al~---~~P~~--- 107 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSY----KSLIAKLELHQQAAESPELKRLEQELA---ANPDN--- 107 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHH----HHHHHHHHHHHHHTSCHHHHHHHHHHH---HSTTC---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHH----HHHHHHHHHHhhcccchHHHHHHHHHH---hCCCC---
Confidence 46788889999999999999999999887654 3422 222344433332233457888888843 23443
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchh-HHHHhHHHHHHhhhcCChHHHHHHHhhHH
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLW-SCNFNSQLANAFIIEGDYQSSISALQSGY 157 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W-~~~f~fqlA~~~~~~~D~~~A~~~L~~g~ 157 (555)
..+...|+.+|...|....+...++++++.. +-+ .-...+.++.++...|+.+.|+...+...
T Consensus 108 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 108 -FELACELAVQYNQVGRDEEALELLWNILKVN---------LGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------TTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---------cccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 3566788999999998877777777766532 112 22345667888888899988888887644
No 147
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.43 E-value=0.057 Score=44.98 Aligned_cols=90 Identities=16% Similarity=0.053 Sum_probs=68.3
Q ss_pred hccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHH
Q 008745 18 KGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYH 97 (555)
Q Consensus 18 ~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~ 97 (555)
.|++..|+.+++.+++..+ .....+.+...+|.+++ ...+.++|..+++++..+ -|.. ..+...|+.+|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~--~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~---~p~~----~~~~~~l~~~~~ 72 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL--QGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQ---FPNH----QALRVFYAMVLY 72 (117)
T ss_dssp ----CCCHHHHHHHHSSCC--CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---CTTC----HHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC--CCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh---CCCc----hHHHHHHHHHHH
Confidence 4578889999999998643 33356778899998776 678999999999999543 3443 456778999999
Q ss_pred HcCCCchHhHHHHHHHHHhh
Q 008745 98 LVGAIPPQKLILYKALDLTS 117 (555)
Q Consensus 98 ~~~~~~~~k~~L~k~i~~s~ 117 (555)
+.|....+...++++++..-
T Consensus 73 ~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 99999888888888888643
No 148
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.37 E-value=0.13 Score=47.70 Aligned_cols=91 Identities=23% Similarity=0.255 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh---------hHHHHHHHHHHHHHhhcCCcc----cHHHHHHh---
Q 008745 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---------SMQAMCHAYAAVSYFCIGDAE----SSSQAIDL--- 512 (555)
Q Consensus 449 ~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~---------~~~~~~~lnlAi~yL~~g~~~----s~~~aL~l--- 512 (555)
.+-.+.-.|.-....|+|++|...|..|++..++. +..+.+-.|.+.++...|+.+ +++++|++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 45567788999999999999999999999988762 235678899999999988854 37899985
Q ss_pred ---hCccccccccccchhHHHHHH----HHHHHHHHhhcChhhhhh
Q 008745 513 ---IGPVYQMKDTINGVREEASLH----FAYGLLLMRQQDFQEARL 551 (555)
Q Consensus 513 ---i~P~~~~~~~~~~~~~ka~~~----fv~gl~~~~q~~~~eAr~ 551 (555)
++|- .+-++ |-.|..+...||++||..
T Consensus 90 ~~e~~pd------------~~~A~~~~~~~rG~aL~~lgr~eEAl~ 123 (159)
T 2hr2_A 90 RGELNQD------------EGKLWISAVYSRALALDGLGRGAEAMP 123 (159)
T ss_dssp HCCTTST------------HHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccCCCc------------hHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence 2552 33445 999999999999999964
No 149
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.30 E-value=0.96 Score=47.75 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=88.5
Q ss_pred HHHH--HhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcc
Q 008745 45 KTRL--RISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122 (555)
Q Consensus 45 ~~rL--rla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~ 122 (555)
|++| |+|++++ .+.+..+|-..+.+...-++.+.. -.+..+.+.+-+++|+..|..+.+|.++.++...... .
T Consensus 98 r~~l~~kL~~l~~-~~~~y~~a~~~i~~l~~~~~~~dd-~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a---i 172 (394)
T 3txn_A 98 RQSLEARLIALYF-DTALYTEALALGAQLLRELKKLDD-KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA---I 172 (394)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTSSC-THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---S
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc---C
Confidence 5556 9999766 789999999888776544444321 2688899999999999999998888888887665422 2
Q ss_pred cccchhHHHHhHHHHHHhh-hcCChHHHHHHHhhHHHHHhhhCCh
Q 008745 123 VAVKLWSCNFNSQLANAFI-IEGDYQSSISALQSGYVCATEISYP 166 (555)
Q Consensus 123 ~~~~~W~~~f~fqlA~~~~-~~~D~~~A~~~L~~g~~~A~~~~~~ 166 (555)
|+++.-+-.+...-+-.|+ .++||..|.+.+=....-..+.|+|
T Consensus 173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~ 217 (394)
T 3txn_A 173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSV 217 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHH
T ss_pred CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccH
Confidence 4566667788888888999 8999999998866655445566765
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.29 E-value=0.25 Score=49.67 Aligned_cols=134 Identities=13% Similarity=0.001 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008745 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (555)
Q Consensus 343 ~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~ 422 (555)
.+-++..-+......|.+++|.++++++++.. ......+. + ...- ... +....+-+++.|..-.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~----p~~~~~~~--~-----~~~~-~~~---~~~~~~~nla~~~~~~g 210 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL----EYESSFSN--E-----EAQK-AQA---LRLASHLNLAMCHLKLQ 210 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----TTCCCCCS--H-----HHHH-HHH---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh----hccccCCh--H-----HHHH-HHH---HHHHHHHHHHHHHHHcC
Confidence 45566666777788999999999999998872 11111111 0 0000 011 13444556788999999
Q ss_pred CHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCC
Q 008745 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (555)
Q Consensus 423 ~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~ 502 (555)
+|++|.+.+.++.+. .|.. +..++.+|......|++++|...|..|+++..+.. -+..+++.+|...++
T Consensus 211 ~~~~A~~~~~~al~~---~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 211 AFSAAIESCNKALEL---DSNN-----EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK---AAKTQLAVCQQRIRR 279 (336)
T ss_dssp CHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH---HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHH
Confidence 999999998877765 4442 45678999999999999999999999998876543 244456666666555
No 151
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.95 E-value=0.32 Score=47.48 Aligned_cols=137 Identities=7% Similarity=-0.004 Sum_probs=93.1
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhh
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~ 86 (555)
....++...+..+++..|+++++.+++..+ +. +.+.+..|.+.+....+.++|+..+++|..+ -|.. .
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p---~~--~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~----~ 203 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDAR---TR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDI----P 203 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTT---CC--THHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTC----H
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---CC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCc----H
Confidence 456677777888999999999999998754 22 2233333333333478999999999999654 2332 3
Q ss_pred hHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHh
Q 008745 87 RTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCAT 161 (555)
Q Consensus 87 ~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~ 161 (555)
.....+++++.+.|....+..++.++++...-+++ .+...|. ..+......||+..|...++.+....-
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~-~~~~l~~-----~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE-KSGEIWA-----RFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG-GCHHHHH-----HHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH-HHHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 45677889999999888888888888874210111 1123453 344445567999999998888776553
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.81 E-value=0.49 Score=47.46 Aligned_cols=123 Identities=10% Similarity=0.055 Sum_probs=88.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhccc-------hhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhH
Q 008745 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPT-------ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM 485 (555)
Q Consensus 413 ~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~-------ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~ 485 (555)
+++.+....++|++|.+...+..+.....+. ........+++-+|......|++++|...|..|+++..+.
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~-- 229 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN-- 229 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--
Confidence 3466677889999999999888887655541 1223346788999999999999999999999999886543
Q ss_pred HHHHHHHHHHHHhhcCCccc----HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhh
Q 008745 486 QAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARL 551 (555)
Q Consensus 486 ~~~~~lnlAi~yL~~g~~~s----~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~ 551 (555)
.-+-.|++.+|...|+.+. +.++++ +.|.. ..+++-.|.....++++++|..
T Consensus 230 -~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~~------------~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 230 -EKGLSRRGEAHLAVNDFELARADFQKVLQ-LYPNN------------KAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSSC------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCCC------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 2344678888988888543 566665 35531 1345666777777888887743
No 153
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=94.79 E-value=0.36 Score=42.38 Aligned_cols=88 Identities=15% Similarity=0.057 Sum_probs=66.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 008745 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (555)
Q Consensus 414 ~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnl 493 (555)
.+.+....+++++|.+.+.++.+. .|.- +..++.+|......|++++|...|..|+++..+.. .+..|+
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~---~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l 95 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVL---DHYD-----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP---RFPFHA 95 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc---Cccc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---hHHHHH
Confidence 466677889999999987776554 4442 44567899999999999999999999998865443 234678
Q ss_pred HHHHhhcCCccc----HHHHHHh
Q 008745 494 AVSYFCIGDAES----SSQAIDL 512 (555)
Q Consensus 494 Ai~yL~~g~~~s----~~~aL~l 512 (555)
+.+|+..|+.+. +.+++++
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 899999888653 5555553
No 154
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=94.79 E-value=0.17 Score=49.49 Aligned_cols=114 Identities=13% Similarity=0.053 Sum_probs=76.4
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlA 494 (555)
+...+..|++++|.+.+.++.+ ..|.- +-.++.+|......|++++|...|..++....+. ....++..
T Consensus 124 a~~~~~~g~~~~A~~~~~~al~---~~P~~-----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~---~~~~~~~~ 192 (287)
T 3qou_A 124 AMQLMQESNYTDALPLLXDAWQ---LSNQN-----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT---RYQGLVAQ 192 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HTTSC-----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH---HHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHH---hCCcc-----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch---HHHHHHHH
Confidence 4556778999999988766544 45543 3568889999999999999999999887765533 24455555
Q ss_pred HHHhhcCCccc----HHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 495 VSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 495 i~yL~~g~~~s----~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
+.+...++.+. +.++++ ..|. -..++|..|..++.+|+++||..+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~-~~P~------------~~~~~~~la~~l~~~g~~~~A~~~ 241 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVA-ENPE------------DAALATQLALQLHQVGRNEEALEL 241 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH-HCTT------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHh-cCCc------------cHHHHHHHHHHHHHcccHHHHHHH
Confidence 55555444332 333333 2342 223467778888888888887654
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=94.73 E-value=0.23 Score=39.04 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=62.4
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlA 494 (555)
+.+....+++++|.+.+.++.+. .|.. +.+.+..|......|++++|...|..+++...+ ....-+..+++
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~---~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~ 83 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQL---DPEE-----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAKA 83 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHH---CCCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh---CcCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHHH
Confidence 55667889999999998877665 3432 345678899999999999999999999988665 11233556788
Q ss_pred HHHhhc-CCccc
Q 008745 495 VSYFCI-GDAES 505 (555)
Q Consensus 495 i~yL~~-g~~~s 505 (555)
.+|... |+.+.
T Consensus 84 ~~~~~~~~~~~~ 95 (112)
T 2kck_A 84 DALRYIEGKEVE 95 (112)
T ss_dssp HHHTTCSSCSHH
T ss_pred HHHHHHhCCHHH
Confidence 899888 77654
No 156
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.68 E-value=0.11 Score=43.11 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=50.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh
Q 008745 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (555)
Q Consensus 414 ~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~ 483 (555)
++.+....+++++|.+.+.++.+. .|.- +.+++.+|......|++++|...|..++....+.
T Consensus 33 lg~~~~~~~~~~~A~~~~~~al~~---~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 33 LGSTFRTLGEYRKAEAVLANGVKQ---FPNH-----QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 466778899999999998877655 4543 4567889999999999999999999998876443
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.57 E-value=0.18 Score=42.79 Aligned_cols=93 Identities=9% Similarity=-0.123 Sum_probs=65.2
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008745 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (555)
Q Consensus 351 vi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~ 430 (555)
+......|.+++|.+.++++++. .|. +...| -+++.+....+++++|.+.
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~----------~P~-------~~~a~-------------~~lg~~~~~~g~~~~A~~~ 73 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQK----------EPE-------REEAW-------------RSLGLTQAENEKDGLAIIA 73 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----------STT-------CHHHH-------------HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH----------CCC-------CHHHH-------------HHHHHHHHHcCCHHHHHHH
Confidence 44455679999999999888775 222 12223 1125556678999999988
Q ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 008745 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (555)
Q Consensus 431 l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~ 481 (555)
+.+..+. .|.- +..++.+|......|++++|...|..+++...
T Consensus 74 ~~~al~l---~P~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 74 LNHARML---DPKD-----IAVHAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHH---CTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 7766554 4553 33668899999999999999999999987543
No 158
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.54 E-value=0.28 Score=47.77 Aligned_cols=111 Identities=12% Similarity=0.023 Sum_probs=84.8
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+..+..+|..+...+++..|+.+++.+++..|. .+.+...+|.+++ ...+.++|..++++|.. --|..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~-~~~~~~~A~~~~~~al~---~~p~~--- 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-----VAVYYTNRALCYL-KMQQPEQALADCRRALE---LDGQS--- 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHH-HTTCHHHHHHHHHHHTT---SCTTC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH---hCCCC---
Confidence 567889999999999999999999999987652 2455667787665 67899999999999843 22332
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchh
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLW 128 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W 128 (555)
..+...++.+|...|....+...+.++++..-.+...+....|
T Consensus 72 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 114 (281)
T 2c2l_A 72 -VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114 (281)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHH
Confidence 3578899999999999988888889999876543333333334
No 159
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.2 Score=39.91 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=61.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh-h--HHHHHH
Q 008745 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-S--MQAMCH 490 (555)
Q Consensus 414 ~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~-~--~~~~~~ 490 (555)
++.+....++|++|.+...+..+. .|.. +.+++.+|.....+|++++|...|..+++..++. + ...-+.
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~---~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 10 QGNSLFKQGLYREAVHCYDQLITA---QPQN-----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 466778899999999998887765 4442 4567899999999999999999999999887654 2 223344
Q ss_pred HHHHHHHhhcCCc
Q 008745 491 AYAAVSYFCIGDA 503 (555)
Q Consensus 491 lnlAi~yL~~g~~ 503 (555)
.+++.++...|+.
T Consensus 82 ~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 82 YRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhH
Confidence 4566666665543
No 160
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.80 E-value=0.56 Score=49.29 Aligned_cols=124 Identities=12% Similarity=0.045 Sum_probs=89.5
Q ss_pred HHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCc--------chhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHH
Q 008745 43 EVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPS--------CFELKCRTFSLLSQCYHLVGAIPPQKLILYKALD 114 (555)
Q Consensus 43 EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~--------~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~ 114 (555)
.+.....+|.+++. ..+.++|..++++|..+....+. ...++..++.-++.||.+.|....+...+.++|+
T Consensus 267 ~a~~~~~~G~~~~~-~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFK-GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 46677788888876 67899999999999776444321 2356688999999999999999878777888888
Q ss_pred HhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHh
Q 008745 115 LTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHL 181 (555)
Q Consensus 115 ~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L 181 (555)
.--. . ...++.++.++...+|+..|+..+++...+.-.+ ..+...+..+...+
T Consensus 346 ~~p~-------~---~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~----~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 346 LDSA-------N---EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN----KAARLQISMCQKKA 398 (457)
T ss_dssp HSTT-------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CHHHHHHHHHHHH
T ss_pred cCCc-------c---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHH
Confidence 6422 1 2345778999999999999999999977654322 23444555555444
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.60 E-value=0.82 Score=48.00 Aligned_cols=134 Identities=7% Similarity=-0.094 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008745 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (555)
Q Consensus 343 ~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~ 422 (555)
.+-.|.--+......|.+++|.++++++++.. ........ ..+. -.-.+...++-|++.|.+-.+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~----p~~~~~~~---------~~~~--~~~~~~~~~~~nla~~~~~~g 331 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL----EMEYGLSE---------KESK--ASESFLLAAFLNLAMCYLKLR 331 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----TTCCSCCH---------HHHH--HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----cccccCCh---------HHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 45566667777888999999999999999862 11100000 0010 001123455567789999999
Q ss_pred CHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCC
Q 008745 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (555)
Q Consensus 423 ~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~ 502 (555)
+|++|.+...++.+. .|.. +..++-+|......|++++|...|+.|+++..+.. -+..+++.++...++
T Consensus 332 ~~~~A~~~~~~al~~---~p~~-----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~---~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 332 EYTKAVECCDKALGL---DSAN-----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK---AARLQISMCQKKAKE 400 (457)
T ss_dssp CHHHHHHHHHHHHHH---STTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc---CCcc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHH
Confidence 999999998887765 3442 45678999999999999999999999998765432 223334455544433
No 162
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.58 E-value=0.73 Score=35.20 Aligned_cols=84 Identities=12% Similarity=0.153 Sum_probs=63.4
Q ss_pred HHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchh
Q 008745 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (555)
Q Consensus 4 ~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~d 83 (555)
.+..+..+|..+...+++..|+.+++.+++..+. . ..+...+|.+++ ...+.++|..+++++..+ -|..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~--~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~---~p~~-- 76 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---N--AEAWYNLGNAYY-KQGDYDEAIEYYQKALEL---DPNN-- 76 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C--HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH---CTTC--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---C--HHHHHHHHHHHH-HHhhHHHHHHHHHHHHhc---CCCC--
Confidence 4567888999999999999999999999987551 1 346777888765 478999999999999654 2222
Q ss_pred hhhhHHHHHHHHHHHcC
Q 008745 84 LKCRTFSLLSQCYHLVG 100 (555)
Q Consensus 84 lK~~a~sLLa~~y~~~~ 100 (555)
..+...|+.+|...|
T Consensus 77 --~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 77 --AEAKQNLGNAKQKQG 91 (91)
T ss_dssp --HHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHhcC
Confidence 345667788777654
No 163
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=93.54 E-value=8.4 Score=40.32 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=85.5
Q ss_pred HHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhh
Q 008745 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK 85 (555)
.+...+++. ...+++..|.++++.+++..| . -....+.+|.+... ..|.++|+..+++|. +..|+ .+
T Consensus 14 ~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P----~-~~~~w~~~~~~~~~-~~~~~~a~~~~~ral---~~~p~-~~-- 80 (530)
T 2ooe_A 14 DAWSILIRE-AQNQPIDKARKTYERLVAQFP----S-SGRFWKLYIEAEIK-AKNYDKVEKLFQRCL---MKVLH-ID-- 80 (530)
T ss_dssp HHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT----T-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHT---TTCCC-HH--
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC----C-CHHHHHHHHHHHHh-cCCHHHHHHHHHHHH---hcCCC-hH--
Confidence 344566764 567899999999999998655 1 14567788888766 479999999999994 44453 23
Q ss_pred hhHHHHHHH-HHHHcCCCchHhHHHHHHHHHhhhh-hcc-cccchhHHHHhHHHHH----HhhhcCChHHHHHHHhhHHH
Q 008745 86 CRTFSLLSQ-CYHLVGAIPPQKLILYKALDLTSSA-SQD-VAVKLWSCNFNSQLAN----AFIIEGDYQSSISALQSGYV 158 (555)
Q Consensus 86 ~~a~sLLa~-~y~~~~~~~~~k~~L~k~i~~s~~~-~e~-~~~~~W~~~f~fqlA~----~~~~~~D~~~A~~~L~~g~~ 158 (555)
....+++ ++...|....++..+++..+.+... +.. .+...|.-...|.... .....|++..|...++.+..
T Consensus 81 --lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 81 --LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp --HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 3555554 3344566665555334444433221 111 1345887666665431 01125788888888887665
No 164
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=93.50 E-value=0.6 Score=37.04 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=69.2
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcc--h
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSC--F 82 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~--~ 82 (555)
+..+..+|..+...+++..|+.+++.+++..|. . +.+...+|.+++ ...+.++|..+++++..+ -|.. .
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~--~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~---~p~~~~~ 74 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---N--PVGYSNKAMALI-KLGEYTQAIQMCQQGLRY---TSTAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---C--HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTS---CSSTTSH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---C--HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHh---CCCccHH
Confidence 567888999999999999999999999987652 1 456778888765 578999999999999543 3333 2
Q ss_pred hhhhhHHHHHHHHHHHcCCCc
Q 008745 83 ELKCRTFSLLSQCYHLVGAIP 103 (555)
Q Consensus 83 dlK~~a~sLLa~~y~~~~~~~ 103 (555)
.....+...++++|...|...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~ 95 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQ 95 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHhHh
Confidence 334667788888988887553
No 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=93.49 E-value=0.078 Score=56.45 Aligned_cols=130 Identities=13% Similarity=0.034 Sum_probs=91.0
Q ss_pred HHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
+.++..+|..+...+++..|+.+++.+++..+. .+.+...+|.+++ ...+.++|...+++|..+ -|..
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-----~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l---~p~~--- 73 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-----NAIYYGNRSLAYL-RTECYGYALGDATRAIEL---DKKY--- 73 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHS---CTTC---
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHh---CCCC---
Confidence 445666778888889999999999999987652 1567777887765 578999999999999654 2222
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhh
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQS 155 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~ 155 (555)
..+...|+.+|...|....+...++++++..-.+ ... ...+..+..+...|++..|++..++
T Consensus 74 -~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~---~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 74 -IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-----KDA---KMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-----TTH---HHHHHHHHHHHHHHHHCCC------
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHH---HHHHHHHHHHHHHHHHHHHhccccc
Confidence 3578889999999999988888889988864321 112 2223333336677899999988873
No 166
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.48 E-value=0.32 Score=49.94 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=83.3
Q ss_pred hHHHHHHHhHHHHHhhccHHHHHHHHHHhhccCCCC-----------ChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHH
Q 008745 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSF-----------LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERS 71 (555)
Q Consensus 3 ~~~~~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l-----------~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka 71 (555)
..+..+..+|..+...+++..|+.|++.+++..+.. .....+.+...+|.+++ ...+.++|..++++|
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHH
Confidence 356778899999999999999999999999732110 12345778888998876 688999999999999
Q ss_pred HHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHh
Q 008745 72 QLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (555)
Q Consensus 72 ~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s 116 (555)
..+ -|. ...++..++.+|...|....+...++++++..
T Consensus 300 l~~---~p~----~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 300 LEI---DPS----NTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HTT---CTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHh---Cch----hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 543 222 35678899999999999988888888888864
No 167
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.35 E-value=0.46 Score=46.21 Aligned_cols=97 Identities=10% Similarity=-0.056 Sum_probs=71.5
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 008745 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 426 (555)
Q Consensus 347 yllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~ 426 (555)
+..-+......|.+++|.++++++++. .|. + ...| -+++.+....++|++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~----~---~~~~-------------~~la~~~~~~~~~~~ 56 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITR----------NPL----V---AVYY-------------TNRALCYLKMQQPEQ 56 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----------CSC----C---HHHH-------------HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCc----c---HHHH-------------HHHHHHHHHhcCHHH
Confidence 334455666789999999999988875 222 0 1111 234667778999999
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 008745 427 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (555)
Q Consensus 427 A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~ 481 (555)
|.+.+.++.+. .|.- ...++.+|......|++++|...|..|+++..
T Consensus 57 A~~~~~~al~~---~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 57 ALADCRRALEL---DGQS-----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHHHHHHTTS---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 99887766543 4543 45788999999999999999999999988764
No 168
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.28 E-value=0.43 Score=49.02 Aligned_cols=108 Identities=9% Similarity=0.056 Sum_probs=81.2
Q ss_pred HHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCC---------cchhhhhhHHHHHHHHHHHcCCCchHhHHHHHH
Q 008745 42 IEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIP---------SCFELKCRTFSLLSQCYHLVGAIPPQKLILYKA 112 (555)
Q Consensus 42 ~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~---------~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~ 112 (555)
..+.....+|..++ ...+.++|...+++|..+....+ ........++.-+|.+|.+.|....+...+.++
T Consensus 221 ~~a~~~~~~g~~~~-~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 221 LISEDLKNIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34566777787766 46789999999999987544321 134567788999999999999987777777887
Q ss_pred HHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHH
Q 008745 113 LDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA 160 (555)
Q Consensus 113 i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A 160 (555)
++..- . ....++.++.++...+|+..|+..++++..+.
T Consensus 300 l~~~p-------~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 300 LEIDP-------S---NTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HTTCT-------T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhCc-------h---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 77421 1 12445778999999999999999999977664
No 169
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=93.13 E-value=2.2 Score=44.86 Aligned_cols=130 Identities=7% Similarity=0.003 Sum_probs=71.8
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhh
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~ 86 (555)
....+|...+..|++..|..+++.+++..+ .--+.+.+.+|.++. .+.|.++|+..+++|.. ..+.. +
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~Al~---~~~~~----~ 390 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAIED----IDPTLVYIQYMKFAR-RAEGIKSGRMIFKKARE---DARTR----H 390 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSSS----SCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHT---CTTCC----T
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCccc----cCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHh---ccCCc----h
Confidence 344566666677777777777777776533 211346666666644 35667777777777742 22221 1
Q ss_pred hHHHHHHHH-HHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHH
Q 008745 87 RTFSLLSQC-YHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYV 158 (555)
Q Consensus 87 ~a~sLLa~~-y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~ 158 (555)
......+.+ |...|....+..++.++++..-. . ...| ...+.+....||...|...++.+..
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~---~--~~~~-----~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---I--PEYV-----LAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT---C--HHHH-----HHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC---C--HHHH-----HHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 112222222 33455555566666666664311 1 1234 3445555566777777777777544
No 170
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=92.75 E-value=0.57 Score=38.27 Aligned_cols=87 Identities=17% Similarity=0.048 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhh
Q 008745 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFII 142 (555)
Q Consensus 63 ~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~ 142 (555)
.|..+++++. +.-|.. ..+...|+.+|...|....+...+.++++..-. . ....+.++.++..
T Consensus 3 ~a~~~~~~al---~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~---~~~~~~la~~~~~ 65 (115)
T 2kat_A 3 AITERLEAML---AQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-------Y---SVAWKWLGKTLQG 65 (115)
T ss_dssp CHHHHHHHHH---TTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------C---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-------c---HHHHHHHHHHHHH
Confidence 4666777773 222332 346788999999999988787778888875321 1 1223568999999
Q ss_pred cCChHHHHHHHhhHHHHHhhhCCh
Q 008745 143 EGDYQSSISALQSGYVCATEISYP 166 (555)
Q Consensus 143 ~~D~~~A~~~L~~g~~~A~~~~~~ 166 (555)
.||+..|+..++++..+....++.
T Consensus 66 ~g~~~~A~~~~~~al~~~~~~~~~ 89 (115)
T 2kat_A 66 QGDRAGARQAWESGLAAAQSRGDQ 89 (115)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cCCHHHHHHHHHHHHHhccccccH
Confidence 999999999999999998877765
No 171
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=92.71 E-value=1.5 Score=40.56 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=86.5
Q ss_pred HHHHHhHHHHHhhc---cHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHh---hcCChHHHHHHHHHHHHHHhcCC
Q 008745 6 EGLWGLADYHENKG---EIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLK---HTHNVNHAKSHLERSQLLLKAIP 79 (555)
Q Consensus 6 ~~Ll~lAe~fr~~~---~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e---~T~N~~~AkthLEka~~l~k~i~ 79 (555)
.+...|+.-+...+ ++..|+++++-+++... +.+...||.+++. -..|.++|...+++|.. .-+
T Consensus 51 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~-------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~ 120 (212)
T 3rjv_A 51 DALALLAQLKIRNPQQADYPQARQLAEKAVEAGS-------KSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSE 120 (212)
T ss_dssp HHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STT
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCC
Confidence 45666777777622 89999999999987643 3467788988776 26799999999999842 111
Q ss_pred cchhhhhhHHHHHHHHHHHcC----CCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhh------hcCChHHH
Q 008745 80 SCFELKCRTFSLLSQCYHLVG----AIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFI------IEGDYQSS 149 (555)
Q Consensus 80 ~~~dlK~~a~sLLa~~y~~~~----~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~------~~~D~~~A 149 (555)
.+---.++.-|+.+|.... ....+...++++++.. +.+ . =.+.++.++. ..+|+..|
T Consensus 121 --~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-----~~~---~---a~~~Lg~~y~~g~gg~~~~d~~~A 187 (212)
T 3rjv_A 121 --SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS-----RTG---Y---AEYWAGMMFQQGEKGFIEPNKQKA 187 (212)
T ss_dssp --SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS-----CTT---H---HHHHHHHHHHHCBTTTBCCCHHHH
T ss_pred --CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-----CCH---H---HHHHHHHHHHcCCCCCCCCCHHHH
Confidence 0112568899999999833 2344444555655531 111 1 1345666664 34599999
Q ss_pred HHHHhhHHHH
Q 008745 150 ISALQSGYVC 159 (555)
Q Consensus 150 ~~~L~~g~~~ 159 (555)
+..+++.++.
T Consensus 188 ~~~~~~A~~~ 197 (212)
T 3rjv_A 188 LHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999885543
No 172
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=92.37 E-value=1.3 Score=33.74 Aligned_cols=61 Identities=18% Similarity=0.065 Sum_probs=47.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 414 ~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
++.+....+++++|.+.+.+..+. .|.. +.+++.+|......|++++|...|..+++...+
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~---~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALEL---DPNN-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHhc---CCCC-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 355566789999999888777765 3432 356778899999999999999999999887543
No 173
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=92.23 E-value=0.57 Score=38.02 Aligned_cols=71 Identities=11% Similarity=-0.004 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCCh
Q 008745 87 RTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYP 166 (555)
Q Consensus 87 ~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~ 166 (555)
.+...|+.+|.+.|....+...+.++++.--. . . ...+.++.++...|++..|++.++++..++...++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~----~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD---Y----V---GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---C----T---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---c----H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 35678899999999998887788888875322 1 1 134568999999999999999999999999888876
Q ss_pred h
Q 008745 167 D 167 (555)
Q Consensus 167 ~ 167 (555)
.
T Consensus 78 ~ 78 (100)
T 3ma5_A 78 K 78 (100)
T ss_dssp H
T ss_pred h
Confidence 3
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=92.13 E-value=0.89 Score=48.20 Aligned_cols=93 Identities=9% Similarity=0.016 Sum_probs=69.2
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 008745 353 LGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALV 432 (555)
Q Consensus 353 ~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~ 432 (555)
.....|.+++|.++++++++. .|. ....| -+++.+....+++++|.+.+.
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~----------~p~-------~~~~~-------------~~lg~~~~~~g~~~~A~~~~~ 64 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL----------NPS-------NAIYY-------------GNRSLAYLRTECYGYALGDAT 64 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH----------CTT-------CHHHH-------------HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh----------CCc-------cHHHH-------------HHHHHHHHHhcCHHHHHHHHH
Confidence 345678999999999998875 222 01112 234667778899999999887
Q ss_pred HHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh
Q 008745 433 QMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (555)
Q Consensus 433 q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~ 483 (555)
+..+. .|.. +..++.+|......|++++|...|+.|++...+.
T Consensus 65 ~al~l---~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 107 (477)
T 1wao_1 65 RAIEL---DKKY-----IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107 (477)
T ss_dssp HHHHS---CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 77655 4543 4567888999999999999999999999876443
No 175
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=92.12 E-value=0.39 Score=39.05 Aligned_cols=61 Identities=10% Similarity=0.046 Sum_probs=48.8
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 414 ~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
++.+....+++++|.+.+.++.+. .|.. +..++.+|......|++++|...|..|+++...
T Consensus 13 lg~~~~~~g~~~~A~~~~~~al~~---~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 13 LAQEHLKHDNASRALALFEELVET---DPDY-----VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 466677889999999988777665 4443 336788999999999999999999999887543
No 176
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=91.91 E-value=2.5 Score=42.58 Aligned_cols=161 Identities=9% Similarity=-0.098 Sum_probs=106.6
Q ss_pred hHHHHHHHh-------HHHHHhhccHHHHHHHHHHhhccCC-------C-------CChhHHHHHHHH--hhHHHHhhcC
Q 008745 3 AVAEGLWGL-------ADYHENKGEIGKAVKCLEAICQSHV-------S-------FLPIIEVKTRLR--ISTLLLKHTH 59 (555)
Q Consensus 3 ~~~~~Ll~l-------Ae~fr~~~~i~~ai~CLeAvl~~~~-------~-------l~P~~EA~~rLr--la~lL~e~T~ 59 (555)
..+.+.+|+ .+-++.......++++++..+.-.| . +...++-+..++ ||.+|. ...
T Consensus 38 ~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~-~~g 116 (282)
T 4f3v_A 38 SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEA-AQG 116 (282)
T ss_dssp TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHH-HHT
T ss_pred hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHH-HCC
Confidence 456777788 6777777777888888888886222 1 233444444444 555554 456
Q ss_pred ChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHH
Q 008745 60 NVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANA 139 (555)
Q Consensus 60 N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~ 139 (555)
+.++|+..|+.. ..-..=+. .++.++.+|++.|.++.++..+.+++. ++.+.-.....+-++.+
T Consensus 117 ~y~eA~~~l~~~-------~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~--------~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 117 NYADAMEALEAA-------PVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK--------WPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp CHHHHHHHHTSS-------CCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG--------CSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-------HhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc--------cCCcccHHHHHHHHHHH
Confidence 889999888443 11112233 889999999999999877665543221 22223234466778999
Q ss_pred hhhcCChHHHHHHHhhHHHHHhhhCCh--hHHHHHHHHHHHHHhcc
Q 008745 140 FIIEGDYQSSISALQSGYVCATEISYP--DLQMFFATAILHVHLMQ 183 (555)
Q Consensus 140 ~~~~~D~~~A~~~L~~g~~~A~~~~~~--~~~v~fals~~~~~L~~ 183 (555)
+..-|++..|++.+++... ..++| ...+.|....++.++-+
T Consensus 181 l~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr 223 (282)
T 4f3v_A 181 AANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGN 223 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCC
Confidence 9999999999999998541 12214 66788888888888854
No 177
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=91.74 E-value=6.9 Score=42.08 Aligned_cols=121 Identities=10% Similarity=-0.063 Sum_probs=88.9
Q ss_pred hhHHHHHHHHhhHHHHh------hcCChHHHHHHHHHHHHHHhcCCcch-hhhhhHHHHHHHHHHHcCCCchHhHHHHHH
Q 008745 40 PIIEVKTRLRISTLLLK------HTHNVNHAKSHLERSQLLLKAIPSCF-ELKCRTFSLLSQCYHLVGAIPPQKLILYKA 112 (555)
Q Consensus 40 P~~EA~~rLrla~lL~e------~T~N~~~AkthLEka~~l~k~i~~~~-dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~ 112 (555)
.....+-.+++++-+++ .-.+.++|+..++++....+.+-+-+ -.--.+..-||.+|...|.+..+.....++
T Consensus 298 s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 298 SQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34455666777765554 34578999999999988776653322 235667788999999999998888888999
Q ss_pred HHHhhhh-hcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhh
Q 008745 113 LDLTSSA-SQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEI 163 (555)
Q Consensus 113 i~~s~~~-~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~ 163 (555)
++.-... ++.-|.+.+ -+..+|.++...|+++.|...+++..++-...
T Consensus 378 L~i~~~~lG~~Hp~~a~---~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~ 426 (490)
T 3n71_A 378 VDGYMKLYHHNNAQLGM---AVMRAGLTNWHAGHIEVGHGMICKAYAILLVT 426 (490)
T ss_dssp HHHHHHHSCTTCHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 8876532 223233343 34578999999999999999999988887665
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=91.20 E-value=1.1 Score=45.02 Aligned_cols=119 Identities=14% Similarity=0.015 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008745 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (555)
Q Consensus 343 ~aLvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~ 422 (555)
.+-.+..-+......|.+++|.++++++++....... ...... . .. ..-.++..++-|++.|.+-.+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-~~~~~~-----~--~~-----~~~~l~~~~~~nla~~~~~~g 244 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-FQLYGK-----Y--QD-----MALAVKNPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-HTCCHH-----H--HH-----HHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-hhhccc-----H--HH-----HHHHHHHHHHHHHHHHHHHcC
Confidence 4555667788888999999999999999987333210 000000 0 00 000012234456788899999
Q ss_pred CHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 423 ~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
+|.+|.+.+..+.+. .|.. ...++-+|......|++++|...|+.|+++..+
T Consensus 245 ~~~~A~~~~~~al~~---~p~~-----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE---EEKN-----PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp CCHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred CHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 999999988777654 4532 456789999999999999999999999876543
No 179
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=91.18 E-value=7.5 Score=39.61 Aligned_cols=157 Identities=9% Similarity=0.001 Sum_probs=99.3
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhh
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~ 86 (555)
++=.+|+++.+. +++=|+..+.... |... +++-+|+++.. ..|.++|...|+++ +..-+. .-..
T Consensus 73 a~~~la~~~~~~-----a~~~l~~l~~~~~---~~~~--~~~~la~i~~~-~g~~eeAL~~l~~~---i~~~~~--~~~l 136 (310)
T 3mv2_B 73 VLDLYVQFLDTK-----NIEELENLLKDKQ---NSPY--ELYLLATAQAI-LGDLDKSLETCVEG---IDNDEA--EGTT 136 (310)
T ss_dssp HHHHHHHHHTTT-----CCHHHHHTTTTSC---CCHH--HHHHHHHHHHH-HTCHHHHHHHHHHH---HTSSCS--TTHH
T ss_pred HHHHHHHHhccc-----HHHHHHHHHhcCC---CCcH--HHHHHHHHHHH-cCCHHHHHHHHHHH---hccCCC--cCcH
Confidence 455677777543 5666777765432 2222 34667766665 59999999999877 222221 3567
Q ss_pred hHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhH-HHHhHHHHHH--hhhcC--ChHHHHHHHhhHHHHHh
Q 008745 87 RTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWS-CNFNSQLANA--FIIEG--DYQSSISALQSGYVCAT 161 (555)
Q Consensus 87 ~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~-~~f~fqlA~~--~~~~~--D~~~A~~~L~~g~~~A~ 161 (555)
++..+++++|.+.|....++..+++..+.- +...|. -..+.+++++ ....| ++..|+..++..+ .
T Consensus 137 ea~~l~vqi~L~~~r~d~A~k~l~~~~~~~-------~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~---~ 206 (310)
T 3mv2_B 137 ELLLLAIEVALLNNNVSTASTIFDNYTNAI-------EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS---Q 206 (310)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH---T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---H
Confidence 889999999999999888777766653321 111355 3566777765 55555 9999999999843 3
Q ss_pred hhCC-hhHHHHHHHHHHHHHhcccCchhHHHHHHH
Q 008745 162 EISY-PDLQMFFATAILHVHLMQWDDENSVLRSIN 195 (555)
Q Consensus 162 ~~~~-~~~~v~fals~~~~~L~~~~~~~~v~~~l~ 195 (555)
..++ ....+++. ++.++ .+.++.+..+.
T Consensus 207 ~~p~~~~~~lLln---~~~~~---g~~~eAe~~L~ 235 (310)
T 3mv2_B 207 TFPTWKTQLGLLN---LHLQQ---RNIAEAQGIVE 235 (310)
T ss_dssp TSCSHHHHHHHHH---HHHHH---TCHHHHHHHHH
T ss_pred hCCCcccHHHHHH---HHHHc---CCHHHHHHHHH
Confidence 4443 22344444 55555 55666666654
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=91.00 E-value=0.84 Score=45.86 Aligned_cols=66 Identities=11% Similarity=-0.062 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHH
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA 160 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A 160 (555)
+-.++..|+.||.+.|....+...+.++|+..-. . ...++.++.++...|++..|+..+++...+.
T Consensus 229 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-------~---~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 229 KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-------N---PKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-------C---HHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4457889999999999998887778888875321 1 2345678999999999999999999976654
No 181
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=90.29 E-value=3.5 Score=43.69 Aligned_cols=100 Identities=9% Similarity=0.033 Sum_probs=69.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 008745 355 RPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQM 434 (555)
Q Consensus 355 ~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~ 434 (555)
...|.+++|+..+++++..-. +.+|-. -..++. .+.|++.+....|+|++|..-..+.
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~---~~lg~~-----------Hp~~a~--------~~~nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMS---SVFEDS-----------NVYMLH--------MMYQAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHT---TTBCTT-----------SHHHHH--------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhh---CccChh-----------chHHHH--------HHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 445778899988888887621 112211 112223 3355677778899999999999999
Q ss_pred HHHHHhc-cc-hhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008745 435 KNWFIRF-PT-ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK 478 (555)
Q Consensus 435 ~~~~~~~-P~-ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k 478 (555)
.++.++. |. =+ ......+=+|......|++++|+..|+.|++
T Consensus 367 L~i~~~~lG~~Hp--~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 367 IKPYSKHYPVYSL--NVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHSCSSCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCh--HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9987763 22 11 1244455688889999999999999999875
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=90.13 E-value=4.6 Score=37.27 Aligned_cols=103 Identities=9% Similarity=0.046 Sum_probs=75.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhccc----hhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-------cC
Q 008745 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPT----ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI-------TE 481 (555)
Q Consensus 413 ~~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~----ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~-------t~ 481 (555)
++.......|+|++|++.-....+..-.+|. -........++-+|.....+|++++|..-|..|+.+ -.
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3466667789999999999988888777654 233345569999999999999999999999999987 44
Q ss_pred Chh-HHHHHHHHHHHHHhhcCCcc----cHHHHHHhhCcc
Q 008745 482 SKS-MQAMCHAYAAVSYFCIGDAE----SSSQAIDLIGPV 516 (555)
Q Consensus 482 s~~-~~~~~~lnlAi~yL~~g~~~----s~~~aL~li~P~ 516 (555)
+.. .+.=+-.|.++++...|+.+ ++.++++ +.|.
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle-l~p~ 134 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE-MIEE 134 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh-cCCC
Confidence 332 22223356788888877754 2777887 4565
No 183
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=90.07 E-value=1 Score=35.45 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=49.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh
Q 008745 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESM-IEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (555)
Q Consensus 414 ~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~-i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~ 483 (555)
.+.+....++|++|.+.+.++.+. .|.. +. .++.+|......|++++|...|..+++...+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVG-----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSST-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 355667789999999988777654 4543 34 78899999999999999999999999876544
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=89.80 E-value=2.8 Score=45.14 Aligned_cols=129 Identities=10% Similarity=0.078 Sum_probs=80.8
Q ss_pred cccchhHHHHHHHHH-HHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccC-cccccccchhhHHHHHHHHHHHHHHHHHH
Q 008745 336 WLPKSAVYALVDLMV-VILGRPKGLFKECMQRIQSGMQTIQDALLKLGIT-DGVREVDLQHSAIWMAGVYLMLLMQFLEN 413 (555)
Q Consensus 336 WLPk~~l~aLvylls-vi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~-~~v~e~~l~~~~~w~~~~yl~L~~~lLE~ 413 (555)
.|+..+..++.-+-+ +......|.+++|+.++++++.... +.+|-. |. ++..| -|
T Consensus 342 ~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~---~~lG~~Hp~------------~a~~l--------~n 398 (490)
T 3n71_A 342 VFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM---KLYHHNNAQ------------LGMAV--------MR 398 (490)
T ss_dssp TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HHSCTTCHH------------HHHHH--------HH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---HHcCCCCHH------------HHHHH--------HH
Confidence 344444443332222 3444567999999999999998732 234432 22 22333 45
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhc--cchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc-CChhHHHHH
Q 008745 414 KVAVELTRSGFVEAQEALVQMKNWFIRF--PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT-ESKSMQAMC 489 (555)
Q Consensus 414 ~v~~~lt~~~~~~A~~~l~q~~~~~~~~--P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t-~s~~~~~~~ 489 (555)
++.+....|++++|...+.+..++.+.. |.=+.. ..+..++++...-.|.+++|+..|..|...+ +++++|-++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~--~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~~~~ 475 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT--KDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQVMA 475 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 5777788999999999999999997764 332211 2233677777788999999999999886544 677776554
No 185
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=89.02 E-value=4 Score=35.28 Aligned_cols=109 Identities=12% Similarity=0.058 Sum_probs=74.5
Q ss_pred ccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHH
Q 008745 19 GEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHL 98 (555)
Q Consensus 19 ~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~ 98 (555)
.++..|+++++-+++... ++ |. +|. ++....+++.|...+++|... +. -.++..|+.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~---a~----lg~-~y~~g~~~~~A~~~~~~Aa~~--g~-------~~a~~~Lg~~y~~ 69 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MF---GC----LSL-VSNSQINKQKLFQYLSKACEL--NS-------GNGCRFLGDFYEN 69 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TT---HH----HHH-HTCTTSCHHHHHHHHHHHHHT--TC-------HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC--Hh---hh----HHH-HHHcCCCHHHHHHHHHHHHcC--CC-------HHHHHHHHHHHHc
Confidence 488999999999997754 32 22 774 455668888899999999653 21 3688999999998
Q ss_pred c----CCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhh----cCChHHHHHHHhhHHH
Q 008745 99 V----GAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFII----EGDYQSSISALQSGYV 158 (555)
Q Consensus 99 ~----~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~----~~D~~~A~~~L~~g~~ 158 (555)
. +....+...++|+.+. +.+ .=.+.++.++.. .+|+..|+..+++.++
T Consensus 70 G~g~~~d~~~A~~~~~~Aa~~------g~~------~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 70 GKYVKKDLRKAAQYYSKACGL------NDQ------DGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT------TCH------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHcC------CCH------HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 3 2223344455555542 111 112456777766 8999999999988554
No 186
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=88.77 E-value=4.4 Score=42.93 Aligned_cols=120 Identities=8% Similarity=-0.081 Sum_probs=84.4
Q ss_pred HHHHHHHHhhHHHHhhcC------ChHHHHHHHHHHHHHHhcCCcch-hhhhhHHHHHHHHHHHcCCCchHhHHHHHHHH
Q 008745 42 IEVKTRLRISTLLLKHTH------NVNHAKSHLERSQLLLKAIPSCF-ELKCRTFSLLSQCYHLVGAIPPQKLILYKALD 114 (555)
Q Consensus 42 ~EA~~rLrla~lL~e~T~------N~~~AkthLEka~~l~k~i~~~~-dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~ 114 (555)
.+.+.-+++++-+++.-+ +.++|+..++++....+.+-+-+ -.--.+..-|+.+|...|.+..+.....|+++
T Consensus 289 e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 368 (433)
T 3qww_A 289 EAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 334444556666655432 56999999999987766652222 23446677899999999999888888899888
Q ss_pred Hhhhh-hcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhC
Q 008745 115 LTSSA-SQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (555)
Q Consensus 115 ~s~~~-~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~ 164 (555)
.-... +..-|.+. .-++.+|.++...|+++.|...+++..++-...-
T Consensus 369 i~~~~lG~~Hp~~a---~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l 416 (433)
T 3qww_A 369 PYSKHYPVYSLNVA---SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH 416 (433)
T ss_dssp HHHHHSCSSCHHHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCChHHH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence 76532 22222223 3345899999999999999999999888876553
No 187
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.69 E-value=1.7 Score=40.85 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=57.5
Q ss_pred HHHHHHH-HHhhccCC-CCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcc------------------
Q 008745 22 GKAVKCL-EAICQSHV-SFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSC------------------ 81 (555)
Q Consensus 22 ~~ai~CL-eAvl~~~~-~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~------------------ 81 (555)
+..+.|+ -++.++++ .++|..++.+-.=+|..||+ +.|+..|.+++.+|..+-+-+++.
T Consensus 39 A~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~ 117 (167)
T 3ffl_A 39 VRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQC 117 (167)
T ss_dssp HHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHCC--------------------C
T ss_pred HHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCccccc
Confidence 3445555 34444444 46899999999999998875 689999999999998777755221
Q ss_pred ----hhhhhhHHHHHHHHHHHcCCCch
Q 008745 82 ----FELKCRTFSLLSQCYHLVGAIPP 104 (555)
Q Consensus 82 ----~dlK~~a~sLLa~~y~~~~~~~~ 104 (555)
.|+||. +|+||.+.|....
T Consensus 118 ~~~e~Elkyk----ia~C~~~l~~~~~ 140 (167)
T 3ffl_A 118 LPSEIEVKYK----LAECYTVLKQDKD 140 (167)
T ss_dssp CCCHHHHHHH----HHHHHHHTTCHHH
T ss_pred ccchHHHHHH----HHHHHHHHCCHHH
Confidence 178887 7999999996653
No 188
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=86.51 E-value=1.7 Score=35.36 Aligned_cols=61 Identities=16% Similarity=0.047 Sum_probs=48.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 414 ~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
++.+....+++++|.+.+.++.+. .|.. +..++.+|......|++++|...|..+++...+
T Consensus 25 lg~~~~~~g~~~~A~~~~~~al~~---~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 25 LGKTYAEHEQFDAALPHLRAALDF---DPTY-----SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH---CCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 355667789999999988777654 4543 335688899999999999999999999876543
No 189
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=86.51 E-value=6.3 Score=30.66 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=56.7
Q ss_pred HHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhH
Q 008745 9 WGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRT 88 (555)
Q Consensus 9 l~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a 88 (555)
+..|..+...+++..|+.+++.+++..|.- | + .+...+|.+++ ...+.++|..+++++..+ -|...+..+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~--~-~~~~~lg~~~~-~~~~~~~A~~~~~~al~~---~p~~~~~~~~- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG-K--D-EAYYLMGNAYR-KLGDWQKALNNYQSAIEL---NPDSPALQAR- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST-H--H-HHHHHHHHHHH-HHTCHHHHHHHHHHHHHH---CTTSTHHHHH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-H--H-HHHHHHHHHHH-HcCCHHHHHHHHHHHHhc---CCCcHHHHHH-
Confidence 457788888999999999999999876521 1 1 37888888765 578999999999999644 3444443322
Q ss_pred HHHHHHHHHHcC
Q 008745 89 FSLLSQCYHLVG 100 (555)
Q Consensus 89 ~sLLa~~y~~~~ 100 (555)
..+.+++...+
T Consensus 75 -~~~~~a~~~~~ 85 (99)
T 2kc7_A 75 -KMVMDILNFYN 85 (99)
T ss_dssp -HHHHHHHHHHC
T ss_pred -HHHHHHHHHHH
Confidence 34444444433
No 190
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=85.32 E-value=13 Score=37.90 Aligned_cols=138 Identities=9% Similarity=-0.033 Sum_probs=79.8
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q 008745 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS-- 422 (555)
Q Consensus 345 Lvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~-- 422 (555)
=++.+.|-.....|..++|.|.+++..+. -| -.+|-.-- +.+++.| +.+.+..|
T Consensus 137 ea~~l~vqi~L~~~r~d~A~k~l~~~~~~----------~~---------d~~~~~d~---~l~~Lae--a~v~l~~g~~ 192 (310)
T 3mv2_B 137 ELLLLAIEVALLNNNVSTASTIFDNYTNA----------IE---------DTVSGDNE---MILNLAE--SYIKFATNKE 192 (310)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------SC---------HHHHHHHH---HHHHHHH--HHHHHHHTCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------Cc---------cccccchH---HHHHHHH--HHHHHHhCCc
Confidence 45566666677789999999988765443 11 11221111 1356666 44555555
Q ss_pred CHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC---h----hHHHHHHHHHHH
Q 008745 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---K----SMQAMCHAYAAV 495 (555)
Q Consensus 423 ~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s---~----~~~~~~~lnlAi 495 (555)
++.+|...+.++ .+.+|+. .. ...+.+ ..+.+|++++|+..++...+.-.+ + +--.-+..|+++
T Consensus 193 ~~q~A~~~f~El---~~~~p~~---~~--~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~ 263 (310)
T 3mv2_B 193 TATSNFYYYEEL---SQTFPTW---KT--QLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT 263 (310)
T ss_dssp TTTHHHHHHHHH---HTTSCSH---HH--HHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHH---HHhCCCc---cc--HHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence 899998887775 6677751 11 112222 578889999999999966654211 1 112333446665
Q ss_pred HHhhcCCcc-c-HHHHHHhhCcc
Q 008745 496 SYFCIGDAE-S-SSQAIDLIGPV 516 (555)
Q Consensus 496 ~yL~~g~~~-s-~~~aL~li~P~ 516 (555)
+.+..|++- . ++++.+ +.|.
T Consensus 264 l~~~lgk~a~~l~~qL~~-~~P~ 285 (310)
T 3mv2_B 264 LALMQGLDTEDLTNQLVK-LDHE 285 (310)
T ss_dssp HHHHTTCTTHHHHHHHHH-TTCC
T ss_pred HHHHhChHHHHHHHHHHH-hCCC
Confidence 555557732 2 444443 5563
No 191
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=85.06 E-value=4.5 Score=42.63 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc-cchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008745 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRF-PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK 478 (555)
Q Consensus 409 ~lLE~~v~~~lt~~~~~~A~~~l~q~~~~~~~~-P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k 478 (555)
..+.|++.+....|+|++|..-..++.+..+.. |.-= .......+=+|......|++++|+..|..|++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H-p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH-PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344556667778999999999999999987663 3210 01244455678888899999999999999875
No 192
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=84.47 E-value=20 Score=37.53 Aligned_cols=64 Identities=17% Similarity=0.061 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCccc----HHHHHHhhCcc
Q 008745 448 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPV 516 (555)
Q Consensus 448 ~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s----~~~aL~li~P~ 516 (555)
..+.++...|+.....|++++|..+|+.|+.+- ++. ++-.-++.++...|+++. +++|+.+ +|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~--~a~~llG~~~~~~G~~~eA~e~~~~AlrL-~P~ 342 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSW--LNYVLLGKVYEMKGMNREAADAYLTAFNL-RPG 342 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SCS
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCC
Confidence 456777788888888889999999998888875 332 333445666666688653 6677753 774
No 193
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.12 E-value=6.4 Score=36.85 Aligned_cols=98 Identities=10% Similarity=-0.009 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHhcCCcc--hhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhc------------ccccc
Q 008745 61 VNHAKSHLERSQLLLKAIPSC--FELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQ------------DVAVK 126 (555)
Q Consensus 61 ~~~AkthLEka~~l~k~i~~~--~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e------------~~~~~ 126 (555)
++-|+.-...+..+.+.-+.. .+.||+....+|+.++..+....+....+++|+.-..-.. -+|..
T Consensus 36 Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s 115 (167)
T 3ffl_A 36 HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQS 115 (167)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCccc
Confidence 344555555554444443443 4899999999999999999998888888888877652110 11211
Q ss_pred hh---HHHHhHHHHHHhhhcCChHHHHHHHhhHHH
Q 008745 127 LW---SCNFNSQLANAFIIEGDYQSSISALQSGYV 158 (555)
Q Consensus 127 ~W---~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~ 158 (555)
.| +...+|+.|.-+..-+++..|++.|+.+-.
T Consensus 116 ~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 116 QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 23 346778899999999999999999997543
No 194
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=82.79 E-value=10 Score=46.43 Aligned_cols=132 Identities=14% Similarity=0.157 Sum_probs=74.2
Q ss_pred HHHHhHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHH-----HHH-------------------HhhHHHHhhcCChH
Q 008745 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVK-----TRL-------------------RISTLLLKHTHNVN 62 (555)
Q Consensus 7 ~Ll~lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~-----~rL-------------------rla~lL~e~T~N~~ 62 (555)
+...+|+.+...|++..+|++|+-+.+..+ .|.++.- +++ ++|.- ++...+.+
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~-le~eg~Ye 1212 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDR-CYDEKMYD 1212 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHH-HHhcCCHH
Confidence 456678888888888888888877766554 3322221 111 11111 11122333
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhH---HH--------
Q 008745 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWS---CN-------- 131 (555)
Q Consensus 63 ~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~---~~-------- 131 (555)
+|+-.+.+ ...+.-|+++|.+.|... +||+....+.+ ...|. +.
T Consensus 1213 eA~~~Y~k---------------A~ny~rLA~tLvkLge~q-------~AIEaarKA~n---~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1213 AAKLLYNN---------------VSNFGRLASTLVHLGEYQ-------AAVDGARKANS---TRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHh---------------hhHHHHHHHHHHHhCCHH-------HHHHHHHHhCC---HHHHHHHHHHHhhhhHHH
Confidence 33333322 246778899999998644 45554443211 23453 22
Q ss_pred --------------HhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCCh
Q 008745 132 --------------FNSQLANAFIIEGDYQSSISALQSGYVCATEISYP 166 (555)
Q Consensus 132 --------------f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~ 166 (555)
++..++..+...|.|+.|++.+++|..+-+.+-+-
T Consensus 1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A 1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence 22344445556799999999999987665444333
No 195
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=79.86 E-value=7.3 Score=31.96 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=54.1
Q ss_pred HHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHh
Q 008745 44 VKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (555)
Q Consensus 44 A~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s 116 (555)
|.-++.+|..+|+- .++.+|..-|++|......-+....-+-.....|+.+|++.|....+...+.++++..
T Consensus 5 a~dc~~lG~~~~~~-~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTE-ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc-cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45678899988864 6799999999999776654322223455677899999999998877777777777754
No 196
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.56 E-value=57 Score=33.77 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=69.0
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC-----ChhHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE-----SKSMQAMC 489 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~-----s~~~~~~~ 489 (555)
+...+-.++..+|.+.|..+....+..+..-........++.|.|....|++.++-.++..++...+ +.+.+.-.
T Consensus 134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~ 213 (393)
T 4b4t_O 134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQL 213 (393)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHH
Confidence 4556677999999999999999998876554456778889999999999999999999988876443 12233223
Q ss_pred HHHHHHHHhhcCCcc-cHHHHHHhhCcc
Q 008745 490 HAYAAVSYFCIGDAE-SSSQAIDLIGPV 516 (555)
Q Consensus 490 ~lnlAi~yL~~g~~~-s~~~aL~li~P~ 516 (555)
..++.+.-|. ++.. .++.+|+ .|.
T Consensus 214 a~~l~~~all-~~~i~~f~eLL~--~p~ 238 (393)
T 4b4t_O 214 AYDLSISALL-GDKIYNFGELLH--HPI 238 (393)
T ss_dssp HHHHHHHHHH-CCSSCSTHHHHH--SCC
T ss_pred HHHHHHHHHc-CCCCCChHHHhC--ChH
Confidence 3333333333 3333 3777776 565
No 197
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.20 E-value=47 Score=34.65 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=55.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChh
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~ 484 (555)
+-+.+-.+||..|...+..+......-|.- .....+....|++.++.|+|..|..+|..+....++.+
T Consensus 175 irl~l~~~d~~~~~~~~~ka~~~~~~~~d~--~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e 242 (429)
T 4b4t_R 175 ARLGFFYNDQLYVKEKLEAVNSMIEKGGDW--ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIE 242 (429)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTCCCT--HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhcCCCH--HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccc
Confidence 445677899999999999999998776542 23456788899999999999999999999877665554
No 198
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.54 E-value=73 Score=33.32 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=72.4
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc----CChhHHHHHH
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT----ESKSMQAMCH 490 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t----~s~~~~~~~~ 490 (555)
+-..+-+++|.+|.+.+.++++.|..... ..+---++-+.-.+.+.+|++..+.+.+..|.+.+ ..|.+++...
T Consensus 106 ~~l~~~~~~y~~a~~~i~~l~~~~~~~dd--~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 106 IALYFDTALYTEALALGAQLLRELKKLDD--KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSSC--THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcccc--chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 55677899999999999999999988643 13445567777888899999999999999886655 4456777777
Q ss_pred HHHHHHHh-hcCC-cccHHHHHHh
Q 008745 491 AYAAVSYF-CIGD-AESSSQAIDL 512 (555)
Q Consensus 491 lnlAi~yL-~~g~-~~s~~~aL~l 512 (555)
.+..+.++ .++| .+..+..++.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 77899998 7777 2334444443
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=76.74 E-value=13 Score=31.90 Aligned_cols=88 Identities=10% Similarity=-0.042 Sum_probs=63.3
Q ss_pred hHHHHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhh---cCChHHHHHHHHHHHHHHhcCCcchhhhhh
Q 008745 11 LADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKH---THNVNHAKSHLERSQLLLKAIPSCFELKCR 87 (555)
Q Consensus 11 lAe~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~---T~N~~~AkthLEka~~l~k~i~~~~dlK~~ 87 (555)
|+.-+.....+..|+++++-+++... +.+...||.++++- ..|.++|...+++|... +. -.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~-------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~-------~~ 94 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNS-------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--ND-------QD 94 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TC-------HH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CC-------HH
Confidence 66666666777889999999997643 46678899887763 78999999999999643 11 36
Q ss_pred HHHHHHHHHHHc----CCCchHhHHHHHHHH
Q 008745 88 TFSLLSQCYHLV----GAIPPQKLILYKALD 114 (555)
Q Consensus 88 a~sLLa~~y~~~----~~~~~~k~~L~k~i~ 114 (555)
+..-|+.+|... +....+...++|+.+
T Consensus 95 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 95 GCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 788999999983 322434444455444
No 200
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=75.98 E-value=29 Score=35.88 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=77.2
Q ss_pred HHHHhHHHHHhhc---cHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhh---cCChHHHHHHHHHHHHHHhcCCc
Q 008745 7 GLWGLADYHENKG---EIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKH---THNVNHAKSHLERSQLLLKAIPS 80 (555)
Q Consensus 7 ~Ll~lAe~fr~~~---~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~---T~N~~~AkthLEka~~l~k~i~~ 80 (555)
+...|+.-+...+ +...|+++++.+....+ .+|..+..+|.++..- ..|.++|...++++. ++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-----~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa------~g 246 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-----VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA------PG 246 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG------GG
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc------CC
Confidence 3445555555566 78888888888876654 2345556777776433 267888888888874 22
Q ss_pred chhhhhhHHHHHHHHHH---HcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhh----cCChHHHHHHH
Q 008745 81 CFELKCRTFSLLSQCYH---LVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFII----EGDYQSSISAL 153 (555)
Q Consensus 81 ~~dlK~~a~sLLa~~y~---~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~----~~D~~~A~~~L 153 (555)
. -.++.-|+.+|+ ..+....+...++|+++. +.+ .=.+.++.++.. .+|+..|+..+
T Consensus 247 ~----~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~------g~~------~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 247 Y----PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA------DQP------RAELLLGKLYYEGKWVPADAKAAEAHF 310 (452)
T ss_dssp S----THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT------TCH------HHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred C----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC------CCH------HHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 2 235667788754 222223333344454432 111 112235554441 34888888888
Q ss_pred hhHHHHHhhhCChhHHHHHHHHHHH
Q 008745 154 QSGYVCATEISYPDLQMFFATAILH 178 (555)
Q Consensus 154 ~~g~~~A~~~~~~~~~v~fals~~~ 178 (555)
++.+ .|++ ...+.+..++
T Consensus 311 ~~Aa-----~g~~--~A~~~Lg~~y 328 (452)
T 3e4b_A 311 EKAV-----GREV--AADYYLGQIY 328 (452)
T ss_dssp HTTT-----TTCH--HHHHHHHHHH
T ss_pred HHHh-----CCCH--HHHHHHHHHH
Confidence 8755 4544 3444554433
No 201
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=75.91 E-value=56 Score=34.08 Aligned_cols=126 Identities=12% Similarity=0.150 Sum_probs=76.5
Q ss_pred ccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcC-ChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHH
Q 008745 19 GEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTH-NVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYH 97 (555)
Q Consensus 19 ~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~-N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~ 97 (555)
+....|+.|||.+++..|.+. .|.+.+=++-+++.-.. .......-+.++..-...+ .-.+.--.++..++-.+.
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a---~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~-~~~~~~a~~~~alal~~l 288 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFT---YARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL-PELNNLSIIYQIKAVSAL 288 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-GGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc-ccCCcCHHHHHHHHHHHH
Confidence 388999999999998876443 34444444444333322 2211112222222211222 112333445666777777
Q ss_pred HcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHH
Q 008745 98 LVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (555)
Q Consensus 98 ~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~ 159 (555)
..|....+...+.|++++- +-|... ..++.++...|++..|++.++....+
T Consensus 289 ~~gd~d~A~~~l~rAl~Ln---------~s~~a~--~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 289 VKGKTDESYQAINTGIDLE---------MSWLNY--VLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCHHHHHHHHHHHHHHC---------CCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHhcC---------CCHHHH--HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7788888888889999873 125322 56788889999999999999875543
No 202
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=73.71 E-value=21 Score=33.13 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=70.9
Q ss_pred HHHHHHhHHHHHhhccH------HHHHHHHHHhhccCCCCChhH------HHHHHHHhhHHHHhhcCChHHHHHHHHHHH
Q 008745 5 AEGLWGLADYHENKGEI------GKAVKCLEAICQSHVSFLPII------EVKTRLRISTLLLKHTHNVNHAKSHLERSQ 72 (555)
Q Consensus 5 ~~~Ll~lAe~fr~~~~i------~~ai~CLeAvl~~~~~l~P~~------EA~~rLrla~lL~e~T~N~~~AkthLEka~ 72 (555)
|+.-|....-+|+.|++ ..-+.++|-++..- ||.. =+..=+||| +|++..|.++||..+..+.
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~---Pp~k~~~wrrYI~LWIrYA--~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL---PPDKYGQNESFARIQVRFA--ELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS---CGGGGTTCHHHHHHHHHHH--HHHHHHCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC---CccccccHHHHHHHHHHHH--HHHHhcCHHHHHHHHHHHH
Confidence 44556666677777776 77888999888652 5542 234446666 4577899999999999996
Q ss_pred HHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHh
Q 008745 73 LLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (555)
Q Consensus 73 ~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s 116 (555)
.+ -..| =..+-+-|+.-...|....++++|.+||...
T Consensus 88 ~~---hKkF----AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 88 AN---CKKF----AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HH---CTTB----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HH---hHHH----HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 64 3344 3334455777777888899999999999855
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=71.76 E-value=16 Score=38.29 Aligned_cols=103 Identities=5% Similarity=-0.024 Sum_probs=73.6
Q ss_pred CChHHHHHHHHHHHHHHhcC-CcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhh-hcccccchhHHHHhHHH
Q 008745 59 HNVNHAKSHLERSQLLLKAI-PSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSA-SQDVAVKLWSCNFNSQL 136 (555)
Q Consensus 59 ~N~~~AkthLEka~~l~k~i-~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~-~e~~~~~~W~~~f~fql 136 (555)
.+.++|+..++++....+.+ +.---.--.+..-|+.+|...|.+..+.....|+++.-... ++.-|.+. .-++.+
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a---~~l~nL 377 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG---VQVMKV 377 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH---HHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH---HHHHHH
Confidence 37789999999986543333 11113356677889999999999987777778888866532 22222222 334679
Q ss_pred HHHhhhcCChHHHHHHHhhHHHHHhhhC
Q 008745 137 ANAFIIEGDYQSSISALQSGYVCATEIS 164 (555)
Q Consensus 137 A~~~~~~~D~~~A~~~L~~g~~~A~~~~ 164 (555)
|.++...|++..|...+++..++-....
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i~~~~l 405 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDIMRVTH 405 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999888876653
No 204
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=69.98 E-value=23 Score=28.83 Aligned_cols=69 Identities=7% Similarity=-0.096 Sum_probs=54.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh
Q 008745 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (555)
Q Consensus 414 ~v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~ 483 (555)
++-...-.++|..|..-+.+..+.....+. .....+.++..+|....-.|+++.|..+|..|+++.++.
T Consensus 11 lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 355566789999999999888877654431 112456788899999999999999999999999876655
No 205
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=69.62 E-value=36 Score=35.12 Aligned_cols=60 Identities=8% Similarity=0.000 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCC---chHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHh----hhcCChHHHHHHHhhHH
Q 008745 88 TFSLLSQCYHLVGAI---PPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAF----IIEGDYQSSISALQSGY 157 (555)
Q Consensus 88 a~sLLa~~y~~~~~~---~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~----~~~~D~~~A~~~L~~g~ 157 (555)
++..|+.+|.+.|.. ..+...++++++. +.+... ..+.++.++ ...+|+..|+..+++.+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~------g~~~a~----~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR------GTVTAQ----RVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT------TCSCHH----HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC------CCHHHH----HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 778888888886632 2222233333332 111111 123344444 33589999999999854
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=67.74 E-value=14 Score=30.16 Aligned_cols=63 Identities=16% Similarity=0.032 Sum_probs=46.0
Q ss_pred HHHHHhhHHHHhhcCC--hHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHH
Q 008745 45 KTRLRISTLLLKHTHN--VNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALD 114 (555)
Q Consensus 45 ~~rLrla~lL~e~T~N--~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~ 114 (555)
-....+|.+|+...+. .++|+.+|++|..+ =|.+ .++..+|+..+++.|....+.....+.++
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---dp~~----~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---EPYN----EAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---CTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---CcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4567789999765554 79999999999543 2332 46788999999999988766555555544
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=65.32 E-value=56 Score=33.20 Aligned_cols=101 Identities=11% Similarity=0.074 Sum_probs=60.9
Q ss_pred HHHHHHHHHHH----HhccchhhhhhhHHHHHHHHHHHHh-----CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHh
Q 008745 428 QEALVQMKNWF----IRFPTILQACESMIEMLRGQYAHSV-----GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF 498 (555)
Q Consensus 428 ~~~l~q~~~~~----~~~P~ll~~~~~~i~~l~G~ya~s~-----g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL 498 (555)
...+.+++.+. +--|+- ...-.|+.+|.+...+ |+.+.|+.||+.|+.++.+... ..++..|-.|.
T Consensus 176 l~~l~~A~a~lerAleLDP~~---~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i--d~~v~YA~~l~ 250 (301)
T 3u64_A 176 PDTVHAAVMMLERACDLWPSY---QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP--DHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHHHHHHCTTH---HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS--HHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHhCCCc---ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHH
Confidence 33444444444 444665 3456788888888885 9999999999999999875432 33444555555
Q ss_pred hc-CCccc----HHHHHHhhCccccccc---cccchhHHHHHHHH
Q 008745 499 CI-GDAES----SSQAIDLIGPVYQMKD---TINGVREEASLHFA 535 (555)
Q Consensus 499 ~~-g~~~s----~~~aL~li~P~~~~~~---~~~~~~~ka~~~fv 535 (555)
+. ||++. +.+++. +.|- ..++ ...+-|+++..+..
T Consensus 251 ~~~gd~~~a~~~L~kAL~-a~p~-~~P~~~lan~~~q~eA~~LL~ 293 (301)
T 3u64_A 251 IPLNNRAGFDEALDRALA-IDPE-SVPHNKLLVILSQKRARWLKA 293 (301)
T ss_dssp TTTTCHHHHHHHHHHHHH-CCGG-GCSSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHc-CCCC-CCCChhHHHHHHHHHHHHHHH
Confidence 53 66554 555554 2232 2122 23556666655543
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=64.66 E-value=29 Score=28.27 Aligned_cols=62 Identities=18% Similarity=0.131 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCC---CchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHH
Q 008745 89 FSLLSQCYHLVGA---IPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA 160 (555)
Q Consensus 89 ~sLLa~~y~~~~~---~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A 160 (555)
...++++++..+. .+.++..|++++..-- -.-+=++.++.++...|||..|+...++.....
T Consensus 9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp----------~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 9 LAAKATTLYYLHKQAMTDEVSLLLEQALQLEP----------YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4456777755443 4677778888888532 223445668999999999999999999866544
No 209
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.87 E-value=1.5e+02 Score=31.13 Aligned_cols=89 Identities=9% Similarity=-0.043 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-HHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC--h
Q 008745 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNW-FIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES--K 483 (555)
Q Consensus 407 ~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~-~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s--~ 483 (555)
.++++| +-+.+..+||..|...+..+..- +...|.- ...-.+....|.|...-++|.+|..+|.++...... .
T Consensus 178 e~~l~q--~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~--~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d 253 (445)
T 4b4t_P 178 QFILEQ--MELSILKGDYSQATVLSRKILKKTFKNPKYE--SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSD 253 (445)
T ss_dssp HHHHHH--HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHH--HHHHHHCCCHHHHHHHHHHHHHhhcccCCcH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCC
Confidence 555666 44566689999999998888654 3333221 245667788899999999999999999998764322 2
Q ss_pred hHHHHHHHHHHHHHhh
Q 008745 484 SMQAMCHAYAAVSYFC 499 (555)
Q Consensus 484 ~~~~~~~lnlAi~yL~ 499 (555)
+.+..+.+..+++++.
T Consensus 254 ~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 254 EAKWKPVLSHIVYFLV 269 (445)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334455555555544
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=59.75 E-value=20 Score=32.94 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=52.6
Q ss_pred HHHhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhc--C-------ChHHHHHHHHHHHHHHhcCCcchhh
Q 008745 14 YHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHT--H-------NVNHAKSHLERSQLLLKAIPSCFEL 84 (555)
Q Consensus 14 ~fr~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T--~-------N~~~AkthLEka~~l~k~i~~~~dl 84 (555)
.+.+-+.+..|++|++.+++..| -..| +..++|.+|.+-- + .+++|...|++|..+ -|.
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~P---~~ae--a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~---- 78 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSNP---LDAD--NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPK---- 78 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCT---TCHH--HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTT----
T ss_pred HHHHHhHHHHHHHHHHHHHHHCC---CCHH--HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcC----
Confidence 45566688999999999998875 3344 5566777776642 2 356999999999543 233
Q ss_pred hhhHHHHHHHHHHHcC
Q 008745 85 KCRTFSLLSQCYHLVG 100 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~ 100 (555)
.-.+++-|+.+|...|
T Consensus 79 ~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFA 94 (158)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhc
Confidence 3456677888888765
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=59.15 E-value=35 Score=31.26 Aligned_cols=52 Identities=13% Similarity=0.039 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhhcCCh
Q 008745 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-----------GCYSEAAFHYVEAAKITESK 483 (555)
Q Consensus 424 ~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~-----------g~~~~A~~~F~~A~k~t~s~ 483 (555)
+++|+..+.+.. .-.|.. +..+|-+|....+. |++++|...|+.|+.+-.+.
T Consensus 62 ~~eAi~~le~AL---~ldP~~-----~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 62 IQEAITKFEEAL---LIDPKK-----DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHH---HHCTTC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHH---HhCcCc-----HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 445555544444 445553 23345555555544 69999999999999876554
No 212
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=55.66 E-value=46 Score=35.60 Aligned_cols=72 Identities=8% Similarity=0.176 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCCchHhHHHHHHHHHhhh--hhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHH-Hhh
Q 008745 89 FSLLSQCYHLVGAIPPQKLILYKALDLTSS--ASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC-ATE 162 (555)
Q Consensus 89 ~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~--~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~-A~~ 162 (555)
...|-++|++.|.....|++ .|+|+.+.- ..+.+|... ..+|++-++.+++.++||..|.+.|...... +..
T Consensus 179 ~n~L~kiYFkl~~~~lckni-~k~i~~~~~~p~~~~~p~~q-~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNI-FKNFQPKSMLAHFNEYQLDQ-QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHH-HHTHHHHCCCSCGGGSCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHH-HHHhccCCCCcChhhCCccc-eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 34466999999999999997 588887632 233444332 3578888999999999999999999998887 654
No 213
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.64 E-value=79 Score=32.90 Aligned_cols=97 Identities=13% Similarity=0.010 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhC
Q 008745 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (555)
Q Consensus 85 K~~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~ 164 (555)
...+..-||+.|+..|....+-.++.+..+.+... .+. -.+.+....+....+|+..+...+.+........+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~----~~k---id~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~ 202 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST----GAK---IDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG 202 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC----CSH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh----HHH---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC
Confidence 44567789999999999977777777777765431 222 14556666777789999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhcccCchhH
Q 008745 165 YPDLQMFFATAILHVHLMQWDDENS 189 (555)
Q Consensus 165 ~~~~~v~fals~~~~~L~~~~~~~~ 189 (555)
++..+.-+....+++++.. .++..
T Consensus 203 d~~~~~~lk~~~gl~~l~~-r~f~~ 226 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAV-RNFKE 226 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGT-SCHHH
T ss_pred CHHHHHHHHHHHHHHHHHh-ChHHH
Confidence 9999998999999888865 55543
No 214
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.11 E-value=1.1e+02 Score=36.02 Aligned_cols=171 Identities=13% Similarity=0.083 Sum_probs=88.7
Q ss_pred HHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCc----c---------------hhhhhhHHHHHHHHHHHcCCCchHhHH
Q 008745 48 LRISTLLLKHTHNVNHAKSHLERSQLLLKAIPS----C---------------FELKCRTFSLLSQCYHLVGAIPPQKLI 108 (555)
Q Consensus 48 Lrla~lL~e~T~N~~~AkthLEka~~l~k~i~~----~---------------~dlK~~a~sLLa~~y~~~~~~~~~k~~ 108 (555)
.=+|++++. +...++|-.++++|. .++.. + ......=+.=++.++.+.|...-+-+.
T Consensus 846 yl~g~~~L~-~ge~~~A~~~F~kaa---~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 846 YLKALIYLK-SKEAVKAVRCFKTTS---LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHTCC---CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHh---hhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555543 556888888888873 33311 0 011112244577888888887555454
Q ss_pred HHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHH-HH-Hhccc--
Q 008745 109 LYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAIL-HV-HLMQW-- 184 (555)
Q Consensus 109 L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~-~~-~L~~~-- 184 (555)
-+.||+.+..+.+..+...|..-|...+. -++|+.|...|-.--+.+.+... --+.+-.+.+. ++ .|+..
T Consensus 922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~-----l~~ye~Ay~aL~~~pd~~~r~~c-Lr~LV~~lce~~~~~~L~~lpf 995 (1139)
T 4fhn_B 922 SLLADASKETDDEDLSIAITHETLKTACA-----AGKFDAAHVALMVLSTTPLKKSC-LLDFVNQLTKQGKINQLLNYSM 995 (1139)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHH-----HCCSGGGGHHHHHHHHSSSCHHH-HHHHHHHHHHHCCHHHHHHHTT
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHh-----hCCHHHHHHHHHhCCCHHHHHHH-HHHHHHHHHhCCChhhhhCCCC
Confidence 47888766544344455578766654333 36777777777543332222111 00111111111 11 22221
Q ss_pred -CchhHHHHHH-HHHHHHHHhcCccccccccchhhhhHHHHHHHHHhhhhhhhhhh
Q 008745 185 -DDENSVLRSI-NQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAH 238 (555)
Q Consensus 185 -~~~~~v~~~l-~~~~~l~~~i~~~~r~~~~g~~~~~e~l~vfy~lrvc~y~~a~~ 238 (555)
.-.++|+..| .+|...-+ .-.+ +.|-+.|+.|++.| .+|..|+-
T Consensus 996 ~gl~~~Vd~IL~~kAr~~~~--------~~~~-p~Yy~iLYs~ri~r-~dyR~AA~ 1041 (1139)
T 4fhn_B 996 PTLRQDVDNLLERKAFQMIN--------VESQ-PCWYNILFSWRYKH-QNYRDAAA 1041 (1139)
T ss_dssp TSCHHHHHHHHHHHHHHHHH--------HCCS-THHHHHHHHHHHHH-HTTSCHHH
T ss_pred ccHHHHHHHHHHHHHHhCCc--------cccC-CCHHHHhHhhhhcc-CChHHHHH
Confidence 2236666666 33443322 1222 34568888888666 78888877
No 215
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=51.81 E-value=1.2e+02 Score=32.26 Aligned_cols=127 Identities=9% Similarity=0.023 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHhcccC--cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH----
Q 008745 364 MQRIQSGMQTIQDALLKLGIT--DGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNW---- 437 (555)
Q Consensus 364 ~Kyl~~gl~~i~~~l~kl~~~--~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~---- 437 (555)
..+++++-+.|...+...... +...+ +. +..-| ++|. +.-+-.+++-.+-. ...+-.-++.+..-
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~-s~-p~kk~--~~l~---l~n~L~kiYFkl~~--~~lckni~k~i~~~~~~p 209 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASST-NI-PGKQR--ILLY---LVNKLNNIYFRIES--PQLCSNIFKNFQPKSMLA 209 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCS-SC-CHHHH--HHHH---HHHHHHHHHHHSSC--CTTHHHHHHTHHHHCCCS
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccc-cc-cccch--hHHH---HHHHHHHHHHHcCC--HHHHHHHHHHhccCCCCc
Confidence 456777777777665543211 11111 11 12455 5542 22222255556544 44455555555543
Q ss_pred -HHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-cCC-------hhHHHHHHHHHHHHHhhcCC
Q 008745 438 -FIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI-TES-------KSMQAMCHAYAAVSYFCIGD 502 (555)
Q Consensus 438 -~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~-t~s-------~~~~~~~~lnlAi~yL~~g~ 502 (555)
++.+|. .....-.|-.|-|...-++|.+|..||..|.+. +.. ..-+..+-.++..+-|..|+
T Consensus 210 ~~~~~p~---~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~ 280 (455)
T 3t5v_B 210 HFNEYQL---DQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGK 280 (455)
T ss_dssp CGGGSCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ChhhCCc---cceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCC
Confidence 222332 456778899999999999999999999999998 643 23445555566666666576
No 216
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=51.61 E-value=40 Score=31.81 Aligned_cols=55 Identities=13% Similarity=0.004 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHhhcCC
Q 008745 448 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK--SMQAMCHAYAAVSYFCIGD 502 (555)
Q Consensus 448 ~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~--~~~~~~~lnlAi~yL~~g~ 502 (555)
....=.|-+|.+.+.-+++.+|..+|..|.+.+... .-+..+-.++..+-|..|+
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~ 68 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGH 68 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCC
Confidence 566778999999999999999999999999988654 3445566666666666677
No 217
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=50.05 E-value=64 Score=31.04 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=50.6
Q ss_pred HHHHHHhhhc----CChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHH
Q 008745 134 SQLANAFIIE----GDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWE 202 (555)
Q Consensus 134 fqlA~~~~~~----~D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~ 202 (555)
..+--+.++| .|.. |+...-.....+...|.|+-++ .|+++-+.|....+++++..+++.+.+.++
T Consensus 50 aRRLvi~AsEDIGlAdP~-Al~~a~aa~~a~~~iG~PE~~i--~LaqaviyLA~aPKSNs~y~A~~~A~~~v~ 119 (204)
T 2r9g_A 50 CRRLMVIGYEDIGLGNPA-AAARTVNAVLAAEKLGLPEARI--PLADVVVDLCLSPKSNSAYMALDAALADIR 119 (204)
T ss_dssp HHHHHHHHHHTTGGGCHH-HHHHHHHHHHHHHHHCTTTTHH--HHHHHHHHHHHSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCHH-HHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 3344444443 2444 7777777888899999998887 568888888888999999999999988876
No 218
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=49.39 E-value=41 Score=34.23 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHH---------------hhc--CChhHHHHHHH
Q 008745 429 EALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAA---------------KIT--ESKSMQAMCHA 491 (555)
Q Consensus 429 ~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~---------------k~t--~s~~~~~~~~l 491 (555)
+-+..+..|...++.-. .=.|.+|-+.|.+..--|++.+|+.||...- +.. ..++..++-.+
T Consensus 114 ~fi~~ai~WS~~~g~~~-~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~ 192 (312)
T 2wpv_A 114 DVITGMNNWSIKFSEYK-FGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS 192 (312)
T ss_dssp HHHHHHHHHHHHTSSCT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH
Confidence 34667888888775422 2367899999999999999999999997211 111 44566777778
Q ss_pred HHHHHHhhcCCcccHHHHHH
Q 008745 492 YAAVSYFCIGDAESSSQAID 511 (555)
Q Consensus 492 nlAi~yL~~g~~~s~~~aL~ 511 (555)
-+.+-|||.++......+++
T Consensus 193 RaVL~yL~l~n~~~A~~~~~ 212 (312)
T 2wpv_A 193 RLVFNYLFISNISFAHESKD 212 (312)
T ss_dssp HHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHH
Confidence 88889999888665444444
No 219
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=47.73 E-value=64 Score=30.97 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=45.2
Q ss_pred ChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHH
Q 008745 145 DYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWE 202 (555)
Q Consensus 145 D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~ 202 (555)
|.. |+...-.....+...|.|+-++ .|+++-+.|....+++++..+.+.+.+.++
T Consensus 59 dP~-Al~~a~aa~~a~~~iG~PE~~i--~LaqaviyLA~aPKSNs~y~A~~~A~~~v~ 113 (201)
T 3bge_A 59 DPR-AMQVALAAWDCFTRVGAYEGER--AIAQAIIYLSVAPKSNAVYTAFNTAKQQAK 113 (201)
T ss_dssp CTT-HHHHHHHHHHHHHHTCHHHHHH--HHHHHHHHHHHSCCCCHHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHHHHHHCCcHHHH--HHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 443 7777777788899999998884 567787888778999999999999988886
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=44.89 E-value=26 Score=32.00 Aligned_cols=81 Identities=9% Similarity=-0.004 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhc
Q 008745 465 CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ 544 (555)
Q Consensus 465 ~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~ 544 (555)
....++..|..+.+... ...=+..|.|..+++..+++...+.+.+++-.++.. ... .+.=++|--|+..++.+
T Consensus 13 ~l~~~~~~y~~e~~~~~---~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~--~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKE--EQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHH--HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHccCC---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Ccc--chHHHHHHHHHHHHHcc
Confidence 45567778887765322 234456677788888666766666666666655542 110 13345777788889999
Q ss_pred Chhhhhhh
Q 008745 545 DFQEARLA 552 (555)
Q Consensus 545 ~~~eAr~~ 552 (555)
+|.+||..
T Consensus 86 ~Y~~A~~y 93 (152)
T 1pc2_A 86 EYEKALKY 93 (152)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99999874
No 221
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=43.43 E-value=49 Score=32.07 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=44.3
Q ss_pred ChHHHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHH
Q 008745 145 DYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWE 202 (555)
Q Consensus 145 D~~~A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~~ 202 (555)
|.. |+...-.....+...|.|+-++ .|+++-+.|....+++++ .+.+.+.+.++
T Consensus 87 dP~-Al~~a~aa~~a~~~iG~PE~~i--~LaqaviyLA~APKSNs~-~A~~~A~~~v~ 140 (213)
T 3ctd_A 87 DPN-AIVVVQSCCDAFDRVGFPEGLF--FLSQASLYLAISPKSNST-KSIFKAMEAIK 140 (213)
T ss_dssp STT-HHHHHHHHHHHHHHHCTTTTHH--HHHHHHHHHHHSCCCCGG-GHHHHHHHHHC
T ss_pred CHH-HHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHcCCccHHH-HHHHHHHHHHH
Confidence 444 7777777888899999998887 567888888888999999 99988887775
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=39.85 E-value=56 Score=28.95 Aligned_cols=81 Identities=10% Similarity=0.015 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHhhcCCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhc
Q 008745 465 CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ 544 (555)
Q Consensus 465 ~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~ 544 (555)
.+..+...|..+... .+ ...-+..|.|..+++..++....+.+.++...++..+ ...-|| .+|--|+..++-|
T Consensus 16 ~l~~~~~~y~~e~~~-~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd---~lY~LAvg~yklg 88 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRD---YVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHH---HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcc-CC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHH---HHHHHHHHHHHhh
Confidence 345566677766542 12 2234566778888887677777777777777666531 112333 3788899999999
Q ss_pred Chhhhhhh
Q 008745 545 DFQEARLA 552 (555)
Q Consensus 545 ~~~eAr~~ 552 (555)
+|.+||..
T Consensus 89 ~Y~~A~~~ 96 (126)
T 1nzn_A 89 EYEKALKY 96 (126)
T ss_dssp CHHHHHHH
T ss_pred hHHHHHHH
Confidence 99999864
No 223
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=38.75 E-value=4.2e+02 Score=32.86 Aligned_cols=55 Identities=20% Similarity=0.139 Sum_probs=37.6
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 008745 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (555)
Q Consensus 415 v~~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s 482 (555)
+-..+..|+|.+|++..... ..|+- .+=.|.++.-.|++++|..-|+.|.+..+.
T Consensus 1112 AKAql~~G~~kEAIdsYiKA-----dD~sa--------y~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA-----DDPSS--------YMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc-----CChHH--------HHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 55666778888888884332 12222 122688888899999999999888876533
No 224
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=37.51 E-value=29 Score=37.15 Aligned_cols=82 Identities=20% Similarity=0.203 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHH--------------------HhHHHHHHhhhcCCh
Q 008745 87 RTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCN--------------------FNSQLANAFIIEGDY 146 (555)
Q Consensus 87 ~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~--------------------f~fqlA~~~~~~~D~ 146 (555)
..+.-||.||.+.|....+-.+-+|+. ++++|....=.|. ....+++.+...|.+
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA~-----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYF 223 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHcC-----CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCH
Confidence 457788999999998765544445541 2222221111111 122333456667899
Q ss_pred HHHHHHHhhHHHHHhhhCChhHHHHHHHHHH
Q 008745 147 QSSISALQSGYVCATEISYPDLQMFFATAIL 177 (555)
Q Consensus 147 ~~A~~~L~~g~~~A~~~~~~~~~v~fals~~ 177 (555)
..|++.|++|...=+ ..+.++.-++.+
T Consensus 224 eEai~lLe~aL~le~----ah~~~ftel~il 250 (449)
T 1b89_A 224 EELITMLEAALGLER----AHMGMFTELAIL 250 (449)
T ss_dssp HHHHHHHHHHTTSTT----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcH----HHHHHHHHHHHH
Confidence 999999998775442 234455444443
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=35.72 E-value=1.3e+02 Score=30.61 Aligned_cols=108 Identities=16% Similarity=0.055 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHhhHHHHhhc-C-------ChHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHc-----CCCchH
Q 008745 39 LPIIEVKTRLRISTLLLKHT-H-------NVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLV-----GAIPPQ 105 (555)
Q Consensus 39 ~P~~EA~~rLrla~lL~e~T-~-------N~~~AkthLEka~~l~k~i~~~~dlK~~a~sLLa~~y~~~-----~~~~~~ 105 (555)
+..+|+..=.=++..-+--- . ....|+..+|||..+ =|++. -=.++..|+-+|.+. |....+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL---DP~~~--~GsA~~~LG~lY~~vPp~~gGd~ekA 223 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL---WPSYQ--EGAVWNVLTKFYAAAPESFGGGMEKA 223 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH---CTTHH--HHHHHHHHHHHHHHSCTTTTCCHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh---CCCcc--cCHHHHHHHHHHHhCCCccCCCHHHH
Confidence 56677766655555443221 1 356888889998654 11211 235889999999994 777888
Q ss_pred hHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhh-cCChHHHHHHHhhHHHHH
Q 008745 106 KLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFII-EGDYQSSISALQSGYVCA 160 (555)
Q Consensus 106 k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~-~~D~~~A~~~L~~g~~~A 160 (555)
+..++|+++++-+ .....+.| .|..+.. .||+..|...|++..+.-
T Consensus 224 ~~~ferAL~LnP~------~~id~~v~---YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 224 HTAFEHLTRYCSA------HDPDHHIT---YADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHCCT------TCSHHHHH---HHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC------CCchHHHH---HHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 8899999998642 11333333 4666666 499999999999966544
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=34.46 E-value=2e+02 Score=26.03 Aligned_cols=59 Identities=10% Similarity=-0.026 Sum_probs=34.5
Q ss_pred HHHHhHHHHHhhc---cHHHHHHHHHHhhccCCCCCh--hHHHHHHHHhhHHHHhhcCChHHHHHHHHHH
Q 008745 7 GLWGLADYHENKG---EIGKAVKCLEAICQSHVSFLP--IIEVKTRLRISTLLLKHTHNVNHAKSHLERS 71 (555)
Q Consensus 7 ~Ll~lAe~fr~~~---~i~~ai~CLeAvl~~~~~l~P--~~EA~~rLrla~lL~e~T~N~~~AkthLEka 71 (555)
.-+.+|=.+..++ ++..||+.|+.+++.. .| +-|+. .-+|-.. -..+|.+.|+..++++
T Consensus 34 ~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~---~p~~~rd~l--Y~LAv~~-~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 34 TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG---SKEEQRDYV--FYLAVGN-YRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS---CHHHHHHHH--HHHHHHH-HHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CccchHHHH--HHHHHHH-HHccCHHHHHHHHHHH
Confidence 3444455555555 7777888888777764 23 34443 3333332 5677777777777665
No 227
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=32.87 E-value=4.7e+02 Score=28.96 Aligned_cols=173 Identities=9% Similarity=-0.047 Sum_probs=99.0
Q ss_pred HH-HhHHHHHhhccHHHHHHHHHHhhccC--------CCCCh---------hHHHHHHHHhhHHHHhhcCChHHHHHHHH
Q 008745 8 LW-GLADYHENKGEIGKAVKCLEAICQSH--------VSFLP---------IIEVKTRLRISTLLLKHTHNVNHAKSHLE 69 (555)
Q Consensus 8 Ll-~lAe~fr~~~~i~~ai~CLeAvl~~~--------~~l~P---------~~EA~~rLrla~lL~e~T~N~~~AkthLE 69 (555)
|| ..|+..+..+++..|-.+++.+++.- ...|. ..-+.+=+.++++.- .+.|.+.|+..++
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er-R~~~l~~AR~vf~ 458 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK-RIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH-HHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 44 57888888889999999999888641 00011 112345566666543 4578999999999
Q ss_pred HHHHHHhcCCcchhhhhhHHHHHHHHHHHcCC-CchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHH
Q 008745 70 RSQLLLKAIPSCFELKCRTFSLLSQCYHLVGA-IPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQS 148 (555)
Q Consensus 70 ka~~l~k~i~~~~dlK~~a~sLLa~~y~~~~~-~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~ 148 (555)
+|... .+. ..+..+.-.|.+-.+.|. ...++.+..+|++..-. ...+|... +......||...
T Consensus 459 ~A~~~---~~~---~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~-----~~~~w~~y-----~~fe~~~~~~~~ 522 (679)
T 4e6h_A 459 KCRRL---KKL---VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT-----DGEYINKY-----LDFLIYVNEESQ 522 (679)
T ss_dssp HHHHT---GGG---SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-----CHHHHHHH-----HHHHHHHTCHHH
T ss_pred HHHHh---cCC---CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----chHHHHHH-----HHHHHhCCCHHH
Confidence 99543 121 123333344666666554 57777788888886432 13366433 333445689888
Q ss_pred HHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHH
Q 008745 149 SISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVW 201 (555)
Q Consensus 149 A~~~L~~g~~~A~~~~~~~~~v~fals~~~~~L~~~~~~~~v~~~l~~~~~l~ 201 (555)
|-..++.+...... ......++-...+.-... -+.+.+..+..++.+..
T Consensus 523 AR~lferal~~~~~-~~~~~~lw~~~~~fE~~~---G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 523 VKSLFESSIDKISD-SHLLKMIFQKVIFFESKV---GSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHTTTSSS-TTHHHHHHHHHHHHHHHT---CCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhC
Confidence 88888875543321 001222232333322222 34466766766666553
No 228
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.15 E-value=1.5e+02 Score=32.44 Aligned_cols=128 Identities=16% Similarity=0.086 Sum_probs=51.8
Q ss_pred hcCHHHHHHHHHHHH--HHHHhc-cchhhhhhhHHHHHHHHHHHHhCCHHHH----------HHHHHHHHhhcC---Chh
Q 008745 421 RSGFVEAQEALVQMK--NWFIRF-PTILQACESMIEMLRGQYAHSVGCYSEA----------AFHYVEAAKITE---SKS 484 (555)
Q Consensus 421 ~~~~~~A~~~l~q~~--~~~~~~-P~ll~~~~~~i~~l~G~ya~s~g~~~~A----------~~~F~~A~k~t~---s~~ 484 (555)
..++++|.+.-..+. +....+ -+.++.+.+-+.+--+...--.|.+... -..+.++.++++ +.+
T Consensus 149 ~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~ 228 (523)
T 4b4t_S 149 SKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNE 228 (523)
T ss_dssp ------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcc
Confidence 456667666555444 333333 3455544444433222222223333321 224445666663 345
Q ss_pred HHHHHHHHHHHHHhhcCCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 485 MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 485 ~~~~~~lnlAi~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
.++.....+--.||..+..++...+++-.. .+.+..+-.+.+-++|-.|-..+.|++|.||..|
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~ 292 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEY 292 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 666655556777888666666666665443 1222223344778899999999999999999876
No 229
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=28.79 E-value=1.5e+02 Score=30.54 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHH-----h---------hcCChhHHHHHHHHHHH
Q 008745 430 ALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAA-----K---------ITESKSMQAMCHAYAAV 495 (555)
Q Consensus 430 ~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~-----k---------~t~s~~~~~~~~lnlAi 495 (555)
-+..+..|...++.-. .=.|-+|.+.|.+..--|++.+|+.||...- . ....++..++-.+-+.+
T Consensus 117 fi~~ai~WS~~~g~~~-~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL 195 (336)
T 3lpz_A 117 FVKEMIDWSKKFGDYP-AGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVL 195 (336)
T ss_dssp HHHHHHHHHHHHSSCT-TCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 5677888887764322 2357899999999999999999999996210 0 11223455677788888
Q ss_pred HHhhcCCccc
Q 008745 496 SYFCIGDAES 505 (555)
Q Consensus 496 ~yL~~g~~~s 505 (555)
-|||.++...
T Consensus 196 ~yL~l~n~~~ 205 (336)
T 3lpz_A 196 PYLLVANVRA 205 (336)
T ss_dssp HHHHTTCHHH
T ss_pred HHHHhCCHHH
Confidence 8999888554
No 230
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=28.60 E-value=3.9e+02 Score=29.68 Aligned_cols=144 Identities=10% Similarity=0.016 Sum_probs=83.0
Q ss_pred HHHhHHHH-HhhccHHHHHHHHHHhhccCCCCChhHHHHHHHHhhHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhh
Q 008745 8 LWGLADYH-ENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (555)
Q Consensus 8 Ll~lAe~f-r~~~~i~~ai~CLeAvl~~~~~l~P~~EA~~rLrla~lL~e~T~N~~~AkthLEka~~l~k~i~~~~dlK~ 86 (555)
+|...-.| ++.+++..|-+-++-+++..+...+ ++-+..|.+-+....+.+.|+..+|+|... -|...++
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~----~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~---~p~~~~~-- 506 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP----DIYLENAYIEYHISKDTKTACKVLELGLKY---FATDGEY-- 506 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT----HHHHHHHHHHHTTTSCCHHHHHHHHHHHHH---HTTCHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCchHH--
Confidence 44444444 4555888888888888776221122 223345555544445589999999999543 2332222
Q ss_pred hHHHHHHHHHHHcCCCchHhHHHHHHHHHhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHhhhCCh
Q 008745 87 RTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYP 166 (555)
Q Consensus 87 ~a~sLLa~~y~~~~~~~~~k~~L~k~i~~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~~~~~~ 166 (555)
....++.....|....++.+..+++..... ...+...|.....|.. ..||...+...........- .++
T Consensus 507 --w~~y~~fe~~~~~~~~AR~lferal~~~~~--~~~~~~lw~~~~~fE~-----~~G~~~~~~~v~~R~~~~~P--~~~ 575 (679)
T 4e6h_A 507 --INKYLDFLIYVNEESQVKSLFESSIDKISD--SHLLKMIFQKVIFFES-----KVGSLNSVRTLEKRFFEKFP--EVN 575 (679)
T ss_dssp --HHHHHHHHHHHTCHHHHHHHHHHHTTTSSS--TTHHHHHHHHHHHHHH-----HTCCSHHHHHHHHHHHHHST--TCC
T ss_pred --HHHHHHHHHhCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCC--CCc
Confidence 233455566668777777777777764321 1123457877666654 36888876666665433322 235
Q ss_pred hHHHH
Q 008745 167 DLQMF 171 (555)
Q Consensus 167 ~~~v~ 171 (555)
.+.+|
T Consensus 576 ~~~~f 580 (679)
T 4e6h_A 576 KLEEF 580 (679)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 231
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=25.65 E-value=2e+02 Score=24.33 Aligned_cols=38 Identities=16% Similarity=0.376 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 008745 455 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 492 (555)
Q Consensus 455 l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~ln 492 (555)
..|--..-+|++.+|...|..+.++|+++.+..++..+
T Consensus 58 ~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fy 95 (106)
T 2vkj_A 58 AEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFY 95 (106)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHH
Confidence 34444456899999999999999999999999887655
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=24.46 E-value=3.9e+02 Score=27.11 Aligned_cols=107 Identities=12% Similarity=0.085 Sum_probs=62.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 008745 356 PKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMK 435 (555)
Q Consensus 356 ~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~ 435 (555)
..|..+.|...+.+++..-+|. ..+++.... +..-.+.-+-.+++..+|..+-..+..|++.+|...+..+
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~-----~L~~~~~~~---w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~- 197 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGP-----VLDDLRDFQ---FVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL- 197 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSS-----TTGGGTTST---THHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred hCCCHHHHHHHHHHHHHhcCCC-----CCCCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-
Confidence 4577777777777777664332 123321111 1111111222245666777888889999999988765544
Q ss_pred HHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008745 436 NWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK 478 (555)
Q Consensus 436 ~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k 478 (555)
....|---+.+..+|. ..+..|+..+|..+|...-+
T Consensus 198 --~~~~P~~E~~~~~lm~-----al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 198 --TFEHPYREPLWTQLIT-----AYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp --HHHSTTCHHHHHHHHH-----HHHTTTCHHHHHHHHHHHHH
T ss_pred --HHhCCCCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHH
Confidence 6667753222322222 23677999999999997544
No 233
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=24.11 E-value=6.4e+02 Score=26.44 Aligned_cols=86 Identities=9% Similarity=0.035 Sum_probs=48.9
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 008745 417 VELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS 496 (555)
Q Consensus 417 ~~lt~~~~~~A~~~l~q~~~~~~~~P~ll~~~~~~i~~l~G~ya~s~g~~~~A~~~F~~A~k~t~s~~~~~~~~lnlAi~ 496 (555)
.-+-.|++++|.+.+.+|.+.. -.|+. .++.++| ..|+ -.|++++|...|..-.+.--.|+...+..|= -.
T Consensus 114 ~~~~~g~~~~A~~l~~~M~~~g-~~Pd~-~tyn~lI----~~~~-~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li--~~ 184 (501)
T 4g26_A 114 LAVAKDDPEMAFDMVKQMKAFG-IQPRL-RSYGPAL----FGFC-RKGDADKAYEVDAHMVESEVVPEEPELAALL--KV 184 (501)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTT-CCCCH-HHHHHHH----HHHH-HTTCHHHHHHHHHHHHHTTCCCCHHHHHHHH--HH
T ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCCcc-ceehHHH----HHHH-HCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH--HH
Confidence 4456789999999999987642 12443 2233333 2333 4699999999999876554444443332221 12
Q ss_pred HhhcCCcccHHHHHH
Q 008745 497 YFCIGDAESSSQAID 511 (555)
Q Consensus 497 yL~~g~~~s~~~aL~ 511 (555)
|-..|+.+...++++
T Consensus 185 ~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 185 SMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHH
Confidence 334455444444443
No 234
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=23.73 E-value=82 Score=24.84 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=25.1
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHHH
Q 008745 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDA 377 (555)
Q Consensus 348 llsvi~~~~kg~~~kA~Kyl~~gl~~i~~~ 377 (555)
+|-||.--..++.++|.+++++|...+++-
T Consensus 29 LMYVILK~A~~d~eeAsrrI~Eg~~~v~~y 58 (65)
T 1zv1_A 29 LMYVILKDADANIEEASRRIEEGQYVVNEY 58 (65)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 344778888899999999999999998763
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=23.68 E-value=87 Score=28.48 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHhhCccccccccccchhHHHHHHHHHHHHHHhhcChhhhhhh
Q 008745 488 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARLA 552 (555)
Q Consensus 488 ~~~lnlAi~yL~~g~~~s~~~aL~li~P~~~~~~~~~~~~~ka~~~fv~gl~~~~q~~~~eAr~~ 552 (555)
-+..|.|..+++..+++...+.+.++...++.. ...-||. +|--++-.++.++|.+||..
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~~Rdc---LYyLAvg~ykl~~Y~~Ar~y 99 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRREC---LYYLTIGCYKLGEYSMAKRY 99 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CSTHHHH---HHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccchhHH---HHHHHHHHHHhhhHHHHHHH
Confidence 345566777777666665666666666665532 2245444 77778889999999999863
No 236
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=22.73 E-value=2.3e+02 Score=25.40 Aligned_cols=89 Identities=8% Similarity=0.100 Sum_probs=55.2
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 008745 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (555)
Q Consensus 345 Lvyllsvi~~~~kg~~~kA~Kyl~~gl~~i~~~l~kl~~~~~v~e~~l~~~~~w~~~~yl~L~~~lLE~~v~~~lt~~~~ 424 (555)
+-++-....+...|++++....+.++...|.+....|-.- + +. ...+. ++|-.+.-.|++ +-+.--....
T Consensus 34 l~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~eL~~sLd~e-g----ei-A~nL~--~LY~y~~~~L~~--Ani~~D~~~l 103 (145)
T 1vh6_A 34 LKFIRLAAQAIENDDMERKNENLIKAQNIIQELNFTLNRN-I----EL-SASMG--AMYDYMYRRLVQ--ANIKNDTGML 103 (145)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-H----HH-TTHHH--HHHHHHHHHHHH--HHHHTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCc-h----HH-HHHHH--HHHHHHHHHHHH--HHhhCCHHHH
Confidence 3344456667778999999999999999987744444221 1 11 12233 677655556655 3333333455
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 008745 425 VEAQEALVQMKNWFIRFPT 443 (555)
Q Consensus 425 ~~A~~~l~q~~~~~~~~P~ 443 (555)
+++...|.++++..+.-+.
T Consensus 104 dev~~ll~~LreaW~~i~~ 122 (145)
T 1vh6_A 104 AEVEGYVTDFRDAWKQAIQ 122 (145)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6788888888887666543
No 237
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.29 E-value=6.3e+02 Score=25.72 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=74.8
Q ss_pred HHhhHHH---HhhcCChHHHHHHHHHHHHHHhcC----------CcchhhhhhHHHHHHHHHHHcCCCchHhHHHHHHHH
Q 008745 48 LRISTLL---LKHTHNVNHAKSHLERSQLLLKAI----------PSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALD 114 (555)
Q Consensus 48 Lrla~lL---~e~T~N~~~AkthLEka~~l~k~i----------~~~~dlK~~a~sLLa~~y~~~~~~~~~k~~L~k~i~ 114 (555)
|+++.++ .+...+.++|-++|+......+.+ ....+-.......++++|...|....+|..|+++-.
T Consensus 76 L~lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~ 155 (393)
T 4b4t_O 76 LSVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEK 155 (393)
T ss_dssp HHHHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444443 567778899999998754333221 223355667778899999999998888888777655
Q ss_pred HhhhhhcccccchhHHHHhHHHHHHhhhcCChHHHHHHHhhHHHHHh
Q 008745 115 LTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCAT 161 (555)
Q Consensus 115 ~s~~~~e~~~~~~W~~~f~fqlA~~~~~~~D~~~A~~~L~~g~~~A~ 161 (555)
.... .+ ...+.=+.+|....+..+...+|+.++..+.-.-.....
T Consensus 156 ~l~~-~~-~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 156 TLDK-KD-SIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHH-SC-CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred hhhc-cC-CccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 4322 22 223345677777888888999999988776555444443
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=21.90 E-value=2.7e+02 Score=29.94 Aligned_cols=132 Identities=14% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCChHHHHH-HH-----HHHHHHHHHHHHhcccCcc-------------------------cccccchhh
Q 008745 347 DLMVVILGRPKGLFKECMQ-RI-----QSGMQTIQDALLKLGITDG-------------------------VREVDLQHS 395 (555)
Q Consensus 347 yllsvi~~~~kg~~~kA~K-yl-----~~gl~~i~~~l~kl~~~~~-------------------------v~e~~l~~~ 395 (555)
..+..-.+...|.+++|.+ ++ ..-+..+-..+++.|..+. -.-..++..
T Consensus 602 ~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~~~ 681 (814)
T 3mkq_A 602 EVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESAE 681 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTGGGCCCHHHHHHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCCCH
T ss_pred HHHHHhHHHHhCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhhCcH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--------HHhccchhhhhhhHHHHH-----HHHHHHH
Q 008745 396 AIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNW--------FIRFPTILQACESMIEML-----RGQYAHS 462 (555)
Q Consensus 396 ~~w~~~~yl~L~~~lLE~~v~~~lt~~~~~~A~~~l~q~~~~--------~~~~P~ll~~~~~~i~~l-----~G~ya~s 462 (555)
..| +.++-..+-.++++.|.+....+.++ ....+..+.......... ....+.-
T Consensus 682 ~~W-------------~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~ 748 (814)
T 3mkq_A 682 MKW-------------RALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWI 748 (814)
T ss_dssp HHH-------------HHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHH-------------HHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHH
Q ss_pred hCCHHHHHHHHHH------HHhhcCChhHHH--HHHH
Q 008745 463 VGCYSEAAFHYVE------AAKITESKSMQA--MCHA 491 (555)
Q Consensus 463 ~g~~~~A~~~F~~------A~k~t~s~~~~~--~~~l 491 (555)
.|++++|...|.. |+.+++...... +..+
T Consensus 749 ~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~ 785 (814)
T 3mkq_A 749 AGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDI 785 (814)
T ss_dssp HTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHH
T ss_pred cCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHH
Done!