Query 008746
Match_columns 555
No_of_seqs 165 out of 1481
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 16:03:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00429 beta-adaptin; Provisi 100.0 9.2E-91 2E-95 759.2 52.3 520 9-550 21-544 (746)
2 KOG1060 Vesicle coat complex A 100.0 3.7E-80 8E-85 640.6 35.8 494 28-548 39-567 (968)
3 KOG1061 Vesicle coat complex A 100.0 2.3E-79 5E-84 641.4 36.8 522 11-550 4-526 (734)
4 KOG1062 Vesicle coat complex A 100.0 7.1E-75 1.5E-79 604.9 37.6 510 18-549 30-578 (866)
5 PF01602 Adaptin_N: Adaptin N 100.0 3.6E-74 7.7E-79 627.9 38.2 507 25-550 5-522 (526)
6 KOG1077 Vesicle coat complex A 100.0 1.1E-71 2.4E-76 570.7 37.0 515 17-552 32-587 (938)
7 KOG1059 Vesicle coat complex A 100.0 1.7E-58 3.7E-63 475.8 34.3 510 18-549 34-574 (877)
8 COG5096 Vesicle coat complex, 100.0 1E-57 2.2E-62 488.1 35.6 494 39-549 31-559 (757)
9 KOG1058 Vesicle coat complex C 100.0 4.1E-49 8.9E-54 407.8 31.3 428 21-481 21-467 (948)
10 KOG1078 Vesicle coat complex C 100.0 4.1E-36 8.9E-41 313.9 32.8 505 12-550 13-530 (865)
11 COG5240 SEC21 Vesicle coat com 100.0 7.7E-33 1.7E-37 279.6 34.5 487 40-547 37-550 (898)
12 PF01602 Adaptin_N: Adaptin N 99.5 6.7E-13 1.4E-17 145.2 23.1 416 69-508 85-518 (526)
13 PRK13800 putative oxidoreducta 99.4 1E-10 2.2E-15 135.0 27.4 271 102-432 623-893 (897)
14 PRK09687 putative lyase; Provi 99.4 1E-10 2.2E-15 116.5 22.0 193 102-327 25-217 (280)
15 PRK09687 putative lyase; Provi 99.3 1.4E-10 3.1E-15 115.4 22.0 218 65-326 56-277 (280)
16 PRK13800 putative oxidoreducta 99.3 7.7E-10 1.7E-14 127.7 26.5 239 138-433 624-862 (897)
17 PTZ00429 beta-adaptin; Provisi 99.3 4.7E-08 1E-12 108.8 38.3 408 105-540 73-495 (746)
18 PLN03200 cellulose synthase-in 99.1 1.8E-07 4E-12 111.9 33.3 418 69-504 410-895 (2102)
19 PLN03200 cellulose synthase-in 99.0 2.3E-06 5E-11 102.8 40.5 461 41-517 203-767 (2102)
20 KOG2171 Karyopherin (importin) 99.0 5.8E-07 1.3E-11 100.4 33.1 425 104-544 8-496 (1075)
21 PF10508 Proteasom_PSMB: Prote 99.0 2.6E-06 5.7E-11 92.2 36.1 433 24-514 4-465 (503)
22 KOG0212 Uncharacterized conser 99.0 7.9E-07 1.7E-11 92.1 28.0 329 99-439 41-407 (675)
23 KOG1059 Vesicle coat complex A 98.9 5.1E-06 1.1E-10 88.5 32.8 349 50-420 95-461 (877)
24 KOG0166 Karyopherin (importin) 98.9 2E-06 4.4E-11 90.1 29.0 328 89-438 74-436 (514)
25 KOG1060 Vesicle coat complex A 98.9 2.6E-06 5.7E-11 91.4 30.0 392 105-527 40-471 (968)
26 PF12717 Cnd1: non-SMC mitotic 98.8 1.4E-07 3E-12 87.8 15.4 143 113-270 1-155 (178)
27 KOG2171 Karyopherin (importin) 98.8 8.9E-06 1.9E-10 91.2 31.0 372 43-422 95-529 (1075)
28 KOG2023 Nuclear transport rece 98.7 5.6E-06 1.2E-10 87.4 25.9 393 69-512 19-503 (885)
29 PF10508 Proteasom_PSMB: Prote 98.7 5E-05 1.1E-09 82.3 31.9 279 43-331 53-366 (503)
30 PF13646 HEAT_2: HEAT repeats; 98.5 4.7E-07 1E-11 73.6 8.4 87 102-200 1-88 (88)
31 KOG1241 Karyopherin (importin) 98.5 0.00046 1E-08 74.5 31.3 435 39-480 229-814 (859)
32 KOG2023 Nuclear transport rece 98.4 6.6E-05 1.4E-09 79.6 24.0 385 118-517 376-820 (885)
33 KOG1058 Vesicle coat complex C 98.4 3.7E-05 7.9E-10 82.5 20.5 328 136-495 100-444 (948)
34 KOG1078 Vesicle coat complex C 98.4 0.00014 3.1E-09 78.5 25.0 105 100-207 205-314 (865)
35 KOG0166 Karyopherin (importin) 98.3 0.0013 2.8E-08 69.6 28.5 285 40-332 79-394 (514)
36 KOG0212 Uncharacterized conser 98.3 0.0007 1.5E-08 70.8 25.8 312 54-378 71-417 (675)
37 KOG1062 Vesicle coat complex A 98.2 0.00012 2.5E-09 79.4 20.4 298 230-540 61-402 (866)
38 KOG1824 TATA-binding protein-i 98.1 0.0024 5.1E-08 70.6 27.8 332 65-418 773-1150(1233)
39 KOG0213 Splicing factor 3b, su 98.1 0.004 8.6E-08 67.2 28.7 103 101-204 477-582 (1172)
40 KOG1020 Sister chromatid cohes 98.1 0.029 6.2E-07 65.4 36.1 136 67-203 820-959 (1692)
41 COG1413 FOG: HEAT repeat [Ener 98.1 0.00075 1.6E-08 69.4 22.0 92 101-204 44-135 (335)
42 TIGR02270 conserved hypothetic 98.0 0.00097 2.1E-08 69.9 21.3 249 121-436 45-294 (410)
43 KOG2259 Uncharacterized conser 98.0 0.0038 8.2E-08 66.7 25.2 338 93-443 151-516 (823)
44 COG5240 SEC21 Vesicle coat com 98.0 0.00096 2.1E-08 69.9 20.4 294 80-401 244-554 (898)
45 COG1413 FOG: HEAT repeat [Ener 97.9 0.0048 1E-07 63.4 25.3 197 64-329 44-240 (335)
46 TIGR02270 conserved hypothetic 97.9 0.00061 1.3E-08 71.4 18.5 120 65-204 56-176 (410)
47 KOG4224 Armadillo repeat prote 97.9 0.0021 4.6E-08 64.0 20.2 380 43-435 23-443 (550)
48 PF05804 KAP: Kinesin-associat 97.9 0.003 6.5E-08 70.2 23.5 347 111-478 261-653 (708)
49 KOG1061 Vesicle coat complex A 97.9 0.0013 2.8E-08 71.6 19.9 428 48-506 65-520 (734)
50 KOG1241 Karyopherin (importin) 97.9 0.0053 1.2E-07 66.6 24.0 432 64-527 217-724 (859)
51 KOG1242 Protein containing ada 97.6 0.031 6.7E-07 59.8 25.5 299 56-404 127-446 (569)
52 COG5096 Vesicle coat complex, 97.6 0.15 3.2E-06 56.9 31.4 170 233-406 101-278 (757)
53 PF12348 CLASP_N: CLASP N term 97.6 0.00042 9.1E-09 67.1 10.6 183 21-207 4-209 (228)
54 KOG2259 Uncharacterized conser 97.6 0.12 2.6E-06 55.6 28.7 360 145-529 89-526 (823)
55 KOG0414 Chromosome condensatio 97.5 0.0033 7.1E-08 71.2 17.2 140 64-206 920-1066(1251)
56 KOG0213 Splicing factor 3b, su 97.5 0.13 2.8E-06 56.1 28.1 235 39-290 648-912 (1172)
57 PF04826 Arm_2: Armadillo-like 97.5 0.015 3.2E-07 57.1 19.5 228 141-394 18-254 (254)
58 KOG4224 Armadillo repeat prote 97.4 0.0034 7.3E-08 62.6 14.1 325 69-404 91-448 (550)
59 PF13646 HEAT_2: HEAT repeats; 97.4 0.00074 1.6E-08 54.5 8.1 84 67-160 3-88 (88)
60 cd00020 ARM Armadillo/beta-cat 97.4 0.00031 6.7E-09 60.0 6.1 102 101-203 8-119 (120)
61 PF12717 Cnd1: non-SMC mitotic 97.4 0.0016 3.5E-08 60.5 10.6 93 148-254 1-93 (178)
62 PF05918 API5: Apoptosis inhib 97.3 0.18 3.9E-06 54.5 26.8 131 65-201 25-159 (556)
63 PF14764 SPG48: AP-5 complex s 97.3 0.057 1.2E-06 56.6 22.4 88 462-549 324-443 (459)
64 COG5181 HSH155 U2 snRNP splice 97.3 0.35 7.6E-06 51.8 27.7 272 268-546 611-906 (975)
65 KOG1240 Protein kinase contain 97.3 0.0071 1.5E-07 68.7 15.7 232 41-289 476-724 (1431)
66 KOG0168 Putative ubiquitin fus 97.2 0.074 1.6E-06 58.7 22.5 177 102-288 169-362 (1051)
67 PF05804 KAP: Kinesin-associat 97.2 0.089 1.9E-06 58.8 23.7 214 65-292 292-522 (708)
68 KOG1242 Protein containing ada 97.2 0.18 4E-06 54.0 24.4 384 142-547 24-439 (569)
69 cd00020 ARM Armadillo/beta-cat 97.2 0.0012 2.5E-08 56.3 6.9 108 136-251 8-118 (120)
70 COG5064 SRP1 Karyopherin (impo 97.1 0.016 3.5E-07 57.4 15.1 214 102-323 159-390 (526)
71 KOG1240 Protein kinase contain 97.1 0.13 2.8E-06 59.0 23.3 288 77-382 437-777 (1431)
72 PF13513 HEAT_EZ: HEAT-like re 97.1 0.0015 3.3E-08 47.7 5.8 49 114-162 1-55 (55)
73 KOG2025 Chromosome condensatio 97.1 0.67 1.5E-05 50.6 32.5 241 61-329 38-292 (892)
74 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0014 3E-08 54.2 5.1 67 129-196 21-89 (97)
75 PF12348 CLASP_N: CLASP N term 97.0 0.034 7.3E-07 53.7 15.8 180 145-335 17-210 (228)
76 KOG1077 Vesicle coat complex A 96.9 0.89 1.9E-05 49.6 29.2 339 79-442 59-437 (938)
77 KOG0414 Chromosome condensatio 96.9 0.21 4.5E-06 57.3 23.0 155 52-207 259-431 (1251)
78 COG5064 SRP1 Karyopherin (impo 96.9 0.088 1.9E-06 52.4 17.8 291 137-438 116-443 (526)
79 COG5098 Chromosome condensatio 96.9 0.008 1.7E-07 64.5 11.3 126 81-207 280-418 (1128)
80 cd00256 VATPase_H VATPase_H, r 96.9 0.18 3.8E-06 53.1 21.1 329 175-515 54-426 (429)
81 PF04826 Arm_2: Armadillo-like 96.9 0.024 5.2E-07 55.6 13.8 148 173-330 11-162 (254)
82 KOG1020 Sister chromatid cohes 96.9 1.1 2.4E-05 52.9 28.4 144 175-331 817-960 (1692)
83 PF02985 HEAT: HEAT repeat; I 96.8 0.0018 3.9E-08 41.3 3.7 30 136-165 1-30 (31)
84 COG5098 Chromosome condensatio 96.8 0.0071 1.5E-07 64.9 9.8 163 43-208 869-1041(1128)
85 COG5181 HSH155 U2 snRNP splice 96.7 0.58 1.3E-05 50.2 23.1 459 58-544 436-939 (975)
86 KOG0211 Protein phosphatase 2A 96.7 0.41 9E-06 53.8 23.5 404 130-547 232-659 (759)
87 KOG0211 Protein phosphatase 2A 96.7 1.1 2.3E-05 50.7 26.5 445 48-510 183-660 (759)
88 KOG1824 TATA-binding protein-i 96.6 1.9 4.2E-05 48.7 36.4 180 24-207 435-641 (1233)
89 KOG0915 Uncharacterized conser 96.5 3 6.4E-05 49.6 29.0 198 135-343 956-1172(1702)
90 KOG0915 Uncharacterized conser 96.4 2.1 4.6E-05 50.8 26.8 301 33-342 1004-1355(1702)
91 KOG2956 CLIP-associating prote 96.3 0.087 1.9E-06 54.6 13.7 160 16-182 279-491 (516)
92 KOG0567 HEAT repeat-containing 96.3 0.019 4.2E-07 55.1 8.4 92 100-202 187-278 (289)
93 COG5215 KAP95 Karyopherin (imp 96.2 2.4 5.1E-05 45.4 28.6 353 135-515 321-712 (858)
94 smart00638 LPD_N Lipoprotein N 96.1 0.065 1.4E-06 59.4 13.1 94 103-202 449-543 (574)
95 KOG1517 Guanine nucleotide bin 96.1 0.085 1.8E-06 59.5 13.3 137 64-205 513-672 (1387)
96 COG5215 KAP95 Karyopherin (imp 95.8 3.4 7.4E-05 44.3 24.6 67 104-170 370-443 (858)
97 PF05918 API5: Apoptosis inhib 95.7 0.035 7.7E-07 59.8 8.3 145 112-274 34-191 (556)
98 KOG1949 Uncharacterized conser 95.7 0.22 4.8E-06 54.0 14.0 157 82-252 154-330 (1005)
99 KOG2062 26S proteasome regulat 95.6 0.43 9.3E-06 52.2 15.6 122 70-202 526-651 (929)
100 KOG1525 Sister chromatid cohes 95.5 2.7 5.8E-05 50.1 23.3 161 352-515 236-406 (1266)
101 KOG2062 26S proteasome regulat 95.5 0.19 4.1E-06 54.9 12.7 141 52-204 473-618 (929)
102 KOG4413 26S proteasome regulat 95.5 1.8 4E-05 43.1 18.3 239 44-291 63-334 (524)
103 PF13513 HEAT_EZ: HEAT-like re 95.4 0.0056 1.2E-07 44.7 0.8 53 149-202 1-55 (55)
104 COG5218 YCG1 Chromosome conden 95.4 0.94 2E-05 48.5 16.9 123 75-199 61-194 (885)
105 KOG0946 ER-Golgi vesicle-tethe 95.3 6.1 0.00013 44.1 26.9 150 145-295 33-200 (970)
106 PF12460 MMS19_C: RNAPII trans 95.1 1.8 3.8E-05 46.0 18.9 230 78-344 163-407 (415)
107 KOG1820 Microtubule-associated 95.1 0.63 1.4E-05 52.8 15.7 193 131-333 249-445 (815)
108 KOG0168 Putative ubiquitin fus 95.0 1.8 4E-05 48.3 18.5 376 23-406 167-633 (1051)
109 PF13251 DUF4042: Domain of un 95.0 1.9 4.2E-05 39.9 16.2 155 151-334 2-177 (182)
110 KOG0567 HEAT repeat-containing 94.8 4.3 9.4E-05 39.4 22.2 249 44-325 19-274 (289)
111 KOG2213 Apoptosis inhibitor 5/ 94.7 5.7 0.00012 40.7 24.1 97 150-251 39-135 (460)
112 KOG1248 Uncharacterized conser 94.7 3.1 6.7E-05 48.3 19.9 228 60-333 651-900 (1176)
113 PF10363 DUF2435: Protein of u 94.7 0.11 2.4E-06 42.4 6.6 67 103-169 6-77 (92)
114 PF10363 DUF2435: Protein of u 94.7 0.15 3.3E-06 41.6 7.3 69 138-207 6-75 (92)
115 PF12830 Nipped-B_C: Sister ch 94.4 0.35 7.5E-06 45.2 10.0 69 102-170 10-80 (187)
116 KOG1943 Beta-tubulin folding c 94.4 13 0.00027 43.1 23.5 244 129-419 335-592 (1133)
117 KOG2274 Predicted importin 9 [ 94.3 12 0.00026 42.5 22.8 280 236-517 462-783 (1005)
118 PF08713 DNA_alkylation: DNA a 94.2 0.13 2.8E-06 49.0 7.1 130 69-208 57-188 (213)
119 KOG2025 Chromosome condensatio 93.9 12 0.00027 41.3 22.8 171 99-285 8-188 (892)
120 COG5116 RPN2 26S proteasome re 93.8 0.56 1.2E-05 49.9 10.9 23 144-166 561-583 (926)
121 PF12719 Cnd3: Nuclear condens 93.8 7.2 0.00016 39.3 18.9 67 373-439 26-94 (298)
122 KOG1248 Uncharacterized conser 93.7 6.5 0.00014 45.8 19.7 272 53-370 601-901 (1176)
123 KOG4413 26S proteasome regulat 93.6 8.7 0.00019 38.5 24.3 151 349-514 268-439 (524)
124 PF12719 Cnd3: Nuclear condens 93.4 5.6 0.00012 40.1 17.5 104 99-203 26-142 (298)
125 PF01347 Vitellogenin_N: Lipop 93.2 0.063 1.4E-06 60.1 3.1 95 102-202 492-587 (618)
126 PF14500 MMS19_N: Dos2-interac 93.1 9.8 0.00021 37.6 18.9 93 312-406 134-241 (262)
127 KOG1822 Uncharacterized conser 93.1 8.5 0.00018 47.0 19.9 222 98-332 874-1128(2067)
128 smart00638 LPD_N Lipoprotein N 93.0 17 0.00037 40.2 24.1 198 114-365 340-543 (574)
129 KOG4500 Rho/Rac GTPase guanine 93.0 1.1 2.4E-05 46.3 11.3 228 101-336 270-524 (604)
130 PF14664 RICTOR_N: Rapamycin-i 93.0 4.6 0.0001 42.0 16.4 156 46-204 5-176 (371)
131 KOG1991 Nuclear transport rece 92.9 21 0.00046 41.0 29.5 138 143-289 12-155 (1010)
132 KOG2160 Armadillo/beta-catenin 92.9 4.8 0.0001 40.8 15.6 163 354-516 99-284 (342)
133 PF02985 HEAT: HEAT repeat; I 92.3 0.25 5.4E-06 31.2 3.8 28 176-204 2-29 (31)
134 KOG1949 Uncharacterized conser 92.1 1.2 2.7E-05 48.6 10.7 149 129-289 167-330 (1005)
135 COG5218 YCG1 Chromosome conden 91.9 18 0.00038 39.3 18.6 73 130-203 86-160 (885)
136 KOG1525 Sister chromatid cohes 91.8 3.1 6.7E-05 49.6 14.6 85 86-170 245-335 (1266)
137 KOG2160 Armadillo/beta-catenin 91.6 1.9 4.2E-05 43.6 10.9 106 142-254 131-241 (342)
138 PF08506 Cse1: Cse1; InterPro 91.2 0.52 1.1E-05 49.0 6.8 60 100-159 305-370 (370)
139 KOG0413 Uncharacterized conser 91.0 7.9 0.00017 44.1 15.7 103 100-203 576-684 (1529)
140 PF08167 RIX1: rRNA processing 90.4 2.7 5.9E-05 38.4 10.1 118 300-443 23-148 (165)
141 KOG1243 Protein kinase [Genera 90.3 1.3 2.8E-05 48.5 8.9 135 66-202 333-474 (690)
142 PF12765 Cohesin_HEAT: HEAT re 90.2 0.27 5.9E-06 33.7 2.5 40 158-198 2-41 (42)
143 PF01347 Vitellogenin_N: Lipop 89.9 24 0.00053 39.4 19.4 192 76-292 377-591 (618)
144 COG5116 RPN2 26S proteasome re 89.7 0.96 2.1E-05 48.2 7.1 137 65-212 517-659 (926)
145 PF11698 V-ATPase_H_C: V-ATPas 89.4 0.64 1.4E-05 39.7 4.6 53 112-164 56-115 (119)
146 PF12755 Vac14_Fab1_bd: Vacuol 89.1 2.9 6.4E-05 34.4 8.3 64 259-322 25-88 (97)
147 PF14664 RICTOR_N: Rapamycin-i 89.0 32 0.00069 35.9 19.5 204 310-517 34-272 (371)
148 PF11698 V-ATPase_H_C: V-ATPas 88.9 1.5 3.3E-05 37.4 6.6 73 260-333 42-117 (119)
149 KOG2032 Uncharacterized conser 88.7 36 0.00078 36.2 18.5 102 103-205 261-372 (533)
150 KOG2759 Vacuolar H+-ATPase V1 88.7 33 0.00072 35.7 26.2 360 111-515 61-439 (442)
151 KOG1293 Proteins containing ar 88.1 34 0.00074 37.6 17.4 174 108-290 339-533 (678)
152 PF02854 MIF4G: MIF4G domain; 86.8 23 0.00051 32.7 14.4 150 357-514 2-163 (209)
153 KOG0413 Uncharacterized conser 86.7 2.5 5.4E-05 47.9 8.2 126 79-206 947-1075(1529)
154 KOG1820 Microtubule-associated 86.5 17 0.00037 41.7 14.9 180 22-205 251-444 (815)
155 PF05004 IFRD: Interferon-rela 86.1 18 0.0004 36.6 13.8 61 103-163 89-159 (309)
156 cd03561 VHS VHS domain family; 85.8 6.6 0.00014 34.4 9.2 86 82-167 19-115 (133)
157 PF14500 MMS19_N: Dos2-interac 85.7 39 0.00084 33.4 17.7 205 71-290 7-237 (262)
158 KOG2933 Uncharacterized conser 85.2 6.5 0.00014 39.1 9.5 119 81-204 71-199 (334)
159 KOG1991 Nuclear transport rece 84.4 87 0.0019 36.3 36.4 429 77-520 282-806 (1010)
160 PF11865 DUF3385: Domain of un 84.0 13 0.00029 33.6 10.6 33 175-207 11-43 (160)
161 PF12460 MMS19_C: RNAPII trans 83.9 62 0.0013 34.2 22.7 74 296-369 317-396 (415)
162 KOG4653 Uncharacterized conser 83.8 45 0.00098 37.9 16.0 68 103-170 730-803 (982)
163 PF00790 VHS: VHS domain; Int 83.7 3.1 6.8E-05 36.8 6.2 88 76-163 18-117 (140)
164 PF08569 Mo25: Mo25-like; Int 83.3 58 0.0013 33.4 17.1 227 138-399 79-332 (335)
165 KOG0891 DNA-dependent protein 82.8 44 0.00095 42.9 17.2 277 117-406 461-767 (2341)
166 PF11935 DUF3453: Domain of un 82.6 35 0.00075 33.2 13.6 146 143-310 1-161 (239)
167 PF01603 B56: Protein phosphat 82.6 65 0.0014 34.1 16.6 175 373-548 133-322 (409)
168 PF03224 V-ATPase_H_N: V-ATPas 82.6 36 0.00079 34.4 14.3 137 186-327 68-223 (312)
169 KOG4653 Uncharacterized conser 82.2 72 0.0016 36.4 16.8 184 65-258 729-923 (982)
170 KOG1943 Beta-tubulin folding c 82.0 1.1E+02 0.0024 35.8 30.5 255 58-332 332-612 (1133)
171 PF00514 Arm: Armadillo/beta-c 81.9 2.6 5.6E-05 28.3 3.9 28 136-163 13-40 (41)
172 PF12530 DUF3730: Protein of u 80.8 56 0.0012 31.6 16.7 163 110-285 11-184 (234)
173 KOG4535 HEAT and armadillo rep 80.8 31 0.00067 36.6 12.7 158 145-332 6-180 (728)
174 KOG2933 Uncharacterized conser 80.5 5.1 0.00011 39.9 6.7 95 67-162 133-232 (334)
175 cd06561 AlkD_like A new struct 80.0 26 0.00055 32.6 11.4 121 79-208 52-174 (197)
176 PF08713 DNA_alkylation: DNA a 80.0 2.5 5.4E-05 40.1 4.5 68 103-170 123-190 (213)
177 cd03568 VHS_STAM VHS domain fa 79.9 16 0.00034 32.5 9.2 81 83-163 20-109 (144)
178 PF12830 Nipped-B_C: Sister ch 79.6 36 0.00079 31.6 12.1 75 131-208 4-78 (187)
179 KOG2956 CLIP-associating prote 79.5 64 0.0014 34.2 14.5 161 113-289 300-476 (516)
180 cd03569 VHS_Hrs_Vps27p VHS dom 79.1 20 0.00044 31.7 9.7 78 86-163 27-113 (142)
181 PF12765 Cohesin_HEAT: HEAT re 79.1 2.1 4.7E-05 29.2 2.7 24 135-158 18-41 (42)
182 PF12074 DUF3554: Domain of un 79.0 49 0.0011 33.9 14.0 82 81-164 5-90 (339)
183 KOG1992 Nuclear export recepto 78.5 1.3E+02 0.0028 34.3 27.6 130 135-275 6-140 (960)
184 PF08167 RIX1: rRNA processing 78.3 13 0.00028 33.9 8.4 75 130-204 20-97 (165)
185 smart00288 VHS Domain present 78.0 19 0.00042 31.4 9.2 86 79-164 16-111 (133)
186 KOG4500 Rho/Rac GTPase guanine 77.4 27 0.00058 36.6 10.9 154 50-205 295-476 (604)
187 KOG0946 ER-Golgi vesicle-tethe 77.1 73 0.0016 36.0 14.7 128 314-441 75-244 (970)
188 smart00567 EZ_HEAT E-Z type HE 76.1 3.3 7.1E-05 25.7 2.7 24 114-137 1-24 (30)
189 PF08569 Mo25: Mo25-like; Int 75.9 99 0.0022 31.7 19.5 79 369-448 205-292 (335)
190 KOG1967 DNA repair/transcripti 75.7 21 0.00046 40.7 10.4 206 106-361 802-1018(1030)
191 KOG1967 DNA repair/transcripti 75.2 7.2 0.00016 44.2 6.7 103 59-161 905-1021(1030)
192 smart00543 MIF4G Middle domain 74.9 69 0.0015 29.4 13.8 52 366-418 11-62 (200)
193 KOG2759 Vacuolar H+-ATPase V1 74.9 6.3 0.00014 40.8 5.8 72 260-332 365-439 (442)
194 PF04388 Hamartin: Hamartin pr 73.4 60 0.0013 36.7 13.7 145 374-529 5-155 (668)
195 cd03572 ENTH_epsin_related ENT 73.2 11 0.00024 32.5 6.0 41 129-169 32-72 (122)
196 cd06561 AlkD_like A new struct 71.9 9.6 0.00021 35.5 6.1 68 103-170 108-176 (197)
197 PF10274 ParcG: Parkin co-regu 71.9 21 0.00045 33.1 7.9 72 135-207 38-112 (183)
198 PF03130 HEAT_PBS: PBS lyase H 71.7 5.9 0.00013 24.0 3.0 25 116-140 1-25 (27)
199 cd03567 VHS_GGA VHS domain fam 71.4 40 0.00087 29.8 9.4 79 85-163 23-115 (139)
200 PF11935 DUF3453: Domain of un 70.0 88 0.0019 30.4 12.5 143 270-420 2-164 (239)
201 KOG1293 Proteins containing ar 69.8 1.9E+02 0.004 32.2 32.3 120 407-532 417-547 (678)
202 cd03569 VHS_Hrs_Vps27p VHS dom 69.4 11 0.00025 33.3 5.6 60 307-366 46-113 (142)
203 PF05004 IFRD: Interferon-rela 68.5 1.4E+02 0.003 30.3 17.5 186 139-333 47-259 (309)
204 PF13001 Ecm29: Proteasome sta 68.0 22 0.00048 38.7 8.6 126 75-204 297-443 (501)
205 cd00872 PI3Ka_I Phosphoinositi 67.6 1E+02 0.0022 28.3 12.1 115 24-147 2-117 (171)
206 PF12231 Rif1_N: Rap1-interact 67.5 1.6E+02 0.0035 30.6 22.5 136 72-208 2-167 (372)
207 COG5656 SXM1 Importin, protein 66.6 2.3E+02 0.005 32.1 24.6 108 100-208 460-575 (970)
208 PF11864 DUF3384: Domain of un 65.9 2E+02 0.0043 31.0 26.8 52 115-166 5-60 (464)
209 KOG1517 Guanine nucleotide bin 65.5 57 0.0012 38.0 11.0 120 44-163 573-731 (1387)
210 PF12530 DUF3730: Protein of u 65.2 91 0.002 30.1 11.5 108 96-205 34-152 (234)
211 PF08506 Cse1: Cse1; InterPro 65.1 24 0.00052 36.7 7.8 129 154-284 229-369 (370)
212 KOG2199 Signal transducing ada 63.9 25 0.00055 36.1 7.3 82 76-157 21-111 (462)
213 cd07064 AlkD_like_1 A new stru 62.6 1.4E+02 0.0031 28.2 13.1 129 69-208 52-183 (208)
214 PF01603 B56: Protein phosphat 60.5 1.1E+02 0.0023 32.4 11.8 72 134-205 132-205 (409)
215 PF10274 ParcG: Parkin co-regu 60.2 30 0.00065 32.0 6.6 80 65-144 40-126 (183)
216 KOG2005 26S proteasome regulat 58.2 41 0.00088 37.2 8.0 82 114-203 622-703 (878)
217 cd00197 VHS_ENTH_ANTH VHS, ENT 58.0 23 0.0005 29.9 5.3 62 306-367 41-115 (115)
218 KOG2137 Protein kinase [Signal 57.8 99 0.0021 34.6 11.0 101 100-202 389-494 (700)
219 KOG2973 Uncharacterized conser 57.7 2.2E+02 0.0047 28.8 19.0 60 103-164 6-71 (353)
220 PF14676 FANCI_S2: FANCI solen 57.3 38 0.00082 30.6 6.7 77 467-545 78-154 (158)
221 KOG2973 Uncharacterized conser 57.2 52 0.0011 33.0 8.0 64 138-205 6-72 (353)
222 cd00197 VHS_ENTH_ANTH VHS, ENT 56.8 67 0.0015 27.0 7.9 49 79-127 16-64 (115)
223 KOG2011 Sister chromatid cohes 56.7 82 0.0018 37.0 10.6 104 99-202 281-397 (1048)
224 PF14676 FANCI_S2: FANCI solen 56.5 81 0.0018 28.5 8.7 120 154-285 37-156 (158)
225 PF11701 UNC45-central: Myosin 56.2 24 0.00052 31.8 5.3 104 59-162 38-157 (157)
226 PF13251 DUF4042: Domain of un 54.8 1.5E+02 0.0033 27.5 10.3 33 256-288 140-172 (182)
227 smart00185 ARM Armadillo/beta- 54.7 18 0.00039 23.6 3.3 28 136-163 13-40 (41)
228 COG5231 VMA13 Vacuolar H+-ATPa 54.1 28 0.00061 35.0 5.6 71 260-331 355-428 (432)
229 PF11701 UNC45-central: Myosin 54.1 31 0.00067 31.1 5.6 118 146-271 16-138 (157)
230 KOG2213 Apoptosis inhibitor 5/ 53.6 32 0.0007 35.5 6.0 80 65-145 27-106 (460)
231 cd03567 VHS_GGA VHS domain fam 52.8 1.5E+02 0.0031 26.2 9.5 50 153-205 19-68 (139)
232 PF12397 U3snoRNP10: U3 small 52.4 1.5E+02 0.0031 25.2 9.6 68 97-166 3-76 (121)
233 PF00514 Arm: Armadillo/beta-c 51.8 29 0.00064 23.0 3.9 30 173-203 11-40 (41)
234 cd03561 VHS VHS domain family; 51.7 67 0.0015 27.9 7.3 74 131-204 33-112 (133)
235 KOG2137 Protein kinase [Signal 50.7 4.1E+02 0.0089 29.9 14.6 246 134-406 239-500 (700)
236 PF04388 Hamartin: Hamartin pr 50.1 2.4E+02 0.0053 32.0 13.0 100 100-208 39-144 (668)
237 PF05536 Neurochondrin: Neuroc 49.6 4E+02 0.0086 29.4 28.3 177 148-333 69-263 (543)
238 KOG2038 CAATT-binding transcri 49.2 4.5E+02 0.0098 30.0 17.3 73 133-208 302-374 (988)
239 PF03224 V-ATPase_H_N: V-ATPas 48.8 38 0.00081 34.3 6.0 107 57-164 52-179 (312)
240 cd03565 VHS_Tom1 VHS domain fa 48.0 69 0.0015 28.3 6.7 26 313-338 50-75 (141)
241 KOG2274 Predicted importin 9 [ 46.0 5.4E+02 0.012 30.0 26.8 205 116-336 426-651 (1005)
242 cd03568 VHS_STAM VHS domain fa 45.9 2.1E+02 0.0047 25.3 11.1 50 237-290 16-66 (144)
243 KOG4535 HEAT and armadillo rep 45.5 14 0.0003 39.0 2.1 127 74-204 23-179 (728)
244 cd08050 TAF6 TATA Binding Prot 43.2 3.2E+02 0.007 28.1 11.8 55 147-203 280-339 (343)
245 PF07539 DRIM: Down-regulated 42.8 34 0.00073 30.3 3.9 27 135-161 17-43 (141)
246 PF13981 SopA: SopA-like centr 41.5 1.5E+02 0.0034 25.9 7.8 88 464-551 25-126 (135)
247 PF12031 DUF3518: Domain of un 41.5 2.4E+02 0.0052 27.4 9.5 74 348-421 134-228 (257)
248 PF12612 TFCD_C: Tubulin foldi 41.3 2.9E+02 0.0062 25.7 10.2 129 130-272 2-138 (193)
249 PF11707 Npa1: Ribosome 60S bi 39.8 4.2E+02 0.0092 27.0 14.4 119 75-201 38-184 (330)
250 KOG1243 Protein kinase [Genera 39.5 6E+02 0.013 28.6 16.5 141 63-204 251-398 (690)
251 KOG0392 SNF2 family DNA-depend 39.2 1.6E+02 0.0035 35.3 9.3 104 101-205 817-926 (1549)
252 PF12074 DUF3554: Domain of un 38.8 4.4E+02 0.0095 26.8 17.8 88 115-204 2-90 (339)
253 PF00613 PI3Ka: Phosphoinositi 38.4 3.3E+02 0.0071 25.2 10.3 97 42-147 27-123 (184)
254 COG5110 RPN1 26S proteasome re 38.3 2.1E+02 0.0045 31.2 9.3 65 134-203 640-704 (881)
255 PF12231 Rif1_N: Rap1-interact 38.0 4.8E+02 0.01 27.1 21.7 257 237-513 59-351 (372)
256 PF13925 Katanin_con80: con80 37.1 3.2E+02 0.0069 24.7 9.7 87 242-334 15-101 (164)
257 PF10521 DUF2454: Protein of u 36.8 2E+02 0.0044 28.5 9.0 40 130-169 114-153 (282)
258 cd03572 ENTH_epsin_related ENT 36.4 91 0.002 26.9 5.4 37 303-339 39-75 (122)
259 PF13001 Ecm29: Proteasome sta 36.3 6E+02 0.013 27.7 29.2 195 345-546 244-482 (501)
260 KOG0905 Phosphoinositide 3-kin 35.7 3.4E+02 0.0075 32.5 11.1 120 24-153 821-946 (1639)
261 PF00790 VHS: VHS domain; Int 35.6 2.5E+02 0.0053 24.6 8.4 50 153-205 23-72 (140)
262 PF12397 U3snoRNP10: U3 small 35.2 2.8E+02 0.006 23.4 9.7 73 131-206 2-76 (121)
263 cd07064 AlkD_like_1 A new stru 34.7 74 0.0016 30.1 5.2 68 103-170 118-185 (208)
264 PF14668 RICTOR_V: Rapamycin-i 34.3 1E+02 0.0022 23.9 4.9 50 465-514 4-58 (73)
265 cd00870 PI3Ka_III Phosphoinosi 33.7 3.7E+02 0.008 24.5 11.4 115 24-147 9-124 (166)
266 PF09759 Atx10homo_assoc: Spin 33.5 58 0.0013 27.1 3.6 26 144-169 39-64 (102)
267 PF08623 TIP120: TATA-binding 33.4 56 0.0012 29.9 3.9 60 146-207 38-97 (169)
268 PF08568 Kinetochor_Ybp2: Unch 33.2 4.3E+02 0.0092 29.8 11.7 56 144-203 451-506 (633)
269 PF07571 DUF1546: Protein of u 33.2 1.8E+02 0.004 23.5 6.5 59 146-204 17-78 (92)
270 KOG2149 Uncharacterized conser 33.1 1.4E+02 0.0031 31.1 7.0 62 141-203 64-127 (393)
271 smart00288 VHS Domain present 32.9 3.3E+02 0.0071 23.6 8.9 49 154-205 19-67 (133)
272 cd03565 VHS_Tom1 VHS domain fa 32.8 3.4E+02 0.0075 23.8 9.9 79 84-162 22-113 (141)
273 KOG2011 Sister chromatid cohes 31.9 3.5E+02 0.0076 32.1 10.6 76 131-207 278-358 (1048)
274 smart00145 PI3Ka Phosphoinosit 29.5 4.6E+02 0.01 24.3 10.7 98 42-147 25-122 (184)
275 PF13925 Katanin_con80: con80 29.3 3.4E+02 0.0074 24.5 8.4 42 354-398 13-54 (164)
276 KOG2199 Signal transducing ada 28.7 3.5E+02 0.0076 28.2 8.8 95 112-208 24-125 (462)
277 PF14668 RICTOR_V: Rapamycin-i 28.3 99 0.0022 24.0 3.9 54 152-205 4-59 (73)
278 KOG2032 Uncharacterized conser 27.9 8E+02 0.017 26.5 23.0 130 70-200 265-412 (533)
279 PF06685 DUF1186: Protein of u 27.8 5.8E+02 0.013 24.9 12.8 132 393-536 59-202 (249)
280 KOG1048 Neural adherens juncti 27.8 8.4E+02 0.018 27.8 12.3 80 173-262 565-650 (717)
281 KOG4199 Uncharacterized conser 27.3 7E+02 0.015 25.7 25.4 297 102-445 79-410 (461)
282 PF09450 DUF2019: Domain of un 27.0 34 0.00074 28.6 1.2 24 139-162 51-74 (106)
283 PF11865 DUF3385: Domain of un 25.9 1.8E+02 0.0039 26.3 5.9 36 93-131 7-42 (160)
284 PF08389 Xpo1: Exportin 1-like 25.6 3.2E+02 0.007 23.4 7.5 138 43-199 6-148 (148)
285 PF07539 DRIM: Down-regulated 25.3 1.1E+02 0.0024 27.0 4.3 44 102-146 19-62 (141)
286 KOG2140 Uncharacterized conser 24.9 7.8E+02 0.017 26.9 10.8 25 356-380 165-189 (739)
287 KOG1087 Cytosolic sorting prot 24.1 1.2E+02 0.0025 32.7 4.8 60 307-366 43-111 (470)
288 COG4912 Predicted DNA alkylati 23.9 1.3E+02 0.0027 28.8 4.5 62 142-207 125-186 (222)
289 PF04054 Not1: CCR4-Not comple 23.6 3.3E+02 0.0072 28.5 8.0 60 382-442 271-338 (379)
290 PF14663 RasGEF_N_2: Rapamycin 23.0 1.2E+02 0.0025 25.8 3.8 29 177-206 11-39 (115)
291 KOG0803 Predicted E3 ubiquitin 22.8 1.5E+03 0.033 28.0 15.4 106 93-204 39-153 (1312)
292 COG4912 Predicted DNA alkylati 22.6 2.8E+02 0.006 26.5 6.5 63 107-169 125-188 (222)
293 COG5369 Uncharacterized conser 21.7 4E+02 0.0088 29.1 8.1 139 137-282 433-586 (743)
294 PF09324 DUF1981: Domain of un 21.7 3E+02 0.0066 21.8 5.8 64 135-199 17-83 (86)
295 KOG1684 Enoyl-CoA hydratase [L 21.7 4.4E+02 0.0094 27.3 8.0 65 352-422 259-324 (401)
296 PF11864 DUF3384: Domain of un 21.4 1E+03 0.022 25.5 32.8 382 150-546 5-460 (464)
297 KOG4524 Uncharacterized conser 21.3 5.3E+02 0.011 30.2 9.3 73 131-205 799-877 (1014)
298 COG4335 DNA alkylation repair 20.8 1.4E+02 0.0031 26.5 3.8 89 77-169 19-116 (167)
299 PF14631 FancD2: Fanconi anaem 20.7 1.7E+03 0.037 27.9 15.2 194 130-334 430-643 (1426)
300 cd00871 PI4Ka Phosphoinositide 20.5 3.6E+02 0.0078 24.8 6.7 58 91-153 66-124 (175)
301 PF05536 Neurochondrin: Neuroc 20.2 1.2E+03 0.025 25.7 17.3 128 310-439 13-169 (543)
302 cd00864 PI3Ka Phosphoinositide 20.0 6.3E+02 0.014 22.5 11.1 98 41-147 20-117 (152)
No 1
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=9.2e-91 Score=759.15 Aligned_cols=520 Identities=29% Similarity=0.472 Sum_probs=474.1
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHH
Q 008746 9 RSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVG 88 (555)
Q Consensus 9 ~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~ 88 (555)
+.++.|..+++||+.|||++|++ .+..+|+++|||+|++|++|+|++++|++|+++++|+|+++|||+|+|+.
T Consensus 21 ~~~~~f~~~~kge~~ELr~~L~s-------~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~ 93 (746)
T PTZ00429 21 TGSKYFAQTRRGEGAELQNDLNG-------TDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVL 93 (746)
T ss_pred CccccccccccchHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45567777889999999999986 45678999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCC
Q 008746 89 NYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP 168 (555)
Q Consensus 89 ~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~ 168 (555)
.|++.+||+++|+||+|+||++|+||.+|++|||+||+++.+++++.+.+.|++++.|++|||||+|++|+.|+|+.+|+
T Consensus 94 ~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 94 STARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHH
Q 008746 169 TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELV 248 (555)
Q Consensus 169 ~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L 248 (555)
.+.+.+|.+.|.++ ++|+||+|+.+|+.+|.+|...+|+ .+.+.+ +.+++|++.+++++||+|+.+|++|
T Consensus 174 lv~~~~~~~~L~~L-L~D~dp~Vv~nAl~aL~eI~~~~~~--------~l~l~~-~~~~~Ll~~L~e~~EW~Qi~IL~lL 243 (746)
T PTZ00429 174 LFYQQDFKKDLVEL-LNDNNPVVASNAAAIVCEVNDYGSE--------KIESSN-EWVNRLVYHLPECNEWGQLYILELL 243 (746)
T ss_pred cccccchHHHHHHH-hcCCCccHHHHHHHHHHHHHHhCch--------hhHHHH-HHHHHHHHHhhcCChHHHHHHHHHH
Confidence 98667899999997 6999999999999999999876553 233343 4789999999999999999999999
Q ss_pred HccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCc-chhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 008746 249 AKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM-TDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH 327 (555)
Q Consensus 249 ~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~-~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~ 327 (555)
.+|.|.+.++...+++.+.+.|+|.|++|+++|+++++++.+.. ++...+++.++..+++.|+ ++++|+||++|+++.
T Consensus 244 ~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~ 322 (746)
T PTZ00429 244 AAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS-RRDAETQYIVCKNIH 322 (746)
T ss_pred HhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh-CCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987653 3444566778888888775 578999999999999
Q ss_pred HHHhhCCcccccccceeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCc-
Q 008746 328 ILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD- 406 (555)
Q Consensus 328 ~l~~~~p~~~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~- 406 (555)
.+++.+|.+|.+|++.|||+++||.+||++||++|+.+||++|+..|++||.+|+.+.|.+|++++|++||.||.++|+
T Consensus 323 ~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~ 402 (746)
T PTZ00429 323 ALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV 402 (746)
T ss_pred HHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhc-ccCCCchHHHHHHHHHHhccccCCCChHHH
Q 008746 407 VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSIS-SQNVQEPKAKAALIWMLGEYSQDMQDAPYI 485 (555)
Q Consensus 407 ~~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~~~~wiiGEy~~~~~~~~~~ 485 (555)
..||+++++++++.++++ ..+++.++++|+++||+.. ++..+...+ .+.+.++++|++++|++|||++.+++++++
T Consensus 403 a~~cV~~Ll~ll~~~~~~-v~e~i~vik~IlrkyP~~~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~ 479 (746)
T PTZ00429 403 APDCANLLLQIVDRRPEL-LPQVVTAAKDIVRKYPELL--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDI 479 (746)
T ss_pred HHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHCccHH--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHH
Confidence 479999999999887665 5578999999999999853 222332221 257889999999999999999999999999
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhc-cCCCcchhhccccccccC
Q 008746 486 LESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGL-ADFHQVVFYGFFPPFSFP 550 (555)
Q Consensus 486 l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~~~~-~d~d~evq~Ra~~~l~~~ 550 (555)
++.++++|.+|+ ++||+++||+++|+|.++|++.++.+..+|+.++ ++.|+||||||+.|+.+-
T Consensus 480 L~~~i~~f~~E~-~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 480 IQRFIDTIMEHE-QRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred HHHHHhhhccCC-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 999999999998 9999999999999999999888999999998875 468899999999999774
No 2
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-80 Score=640.56 Aligned_cols=494 Identities=30% Similarity=0.479 Sum_probs=455.3
Q ss_pred HHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHh
Q 008746 28 QLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQR 107 (555)
Q Consensus 28 ~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~k 107 (555)
.|+.+.+|++ +..|+++||++|.+|+.|.|+|.+|++|+|+++|+|.++||++|+|+.+|++++||+++|.||+|||
T Consensus 39 dL~~lLdSnk---d~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk 115 (968)
T KOG1060|consen 39 DLKQLLDSNK---DSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQK 115 (968)
T ss_pred HHHHHHhccc---cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHh
Confidence 4555666655 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCC
Q 008746 108 DCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDP 187 (555)
Q Consensus 108 DL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~ 187 (555)
+|.|+|+.+||.|||+|++|+.|.+++.++-.|+++..|++|||||.||.|+.|+|..+|+.- +++.+.++.+ ++|.
T Consensus 116 ~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k--~qL~e~I~~L-LaD~ 192 (968)
T KOG1060|consen 116 ALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK--DQLEEVIKKL-LADR 192 (968)
T ss_pred hhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH--HHHHHHHHHH-hcCC
Confidence 999999999999999999999999999999999999999999999999999999999999986 6788888887 6999
Q ss_pred ChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCC---C---------
Q 008746 188 DPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL---D--------- 255 (555)
Q Consensus 188 d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~---~--------- 255 (555)
+|.|+++|+.++.++ ||++.+++|+ ++++||+.+.+.++|+|+.++.+|.+|++. +
T Consensus 193 splVvgsAv~AF~ev-----------CPerldLIHk-nyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e 260 (968)
T KOG1060|consen 193 SPLVVGSAVMAFEEV-----------CPERLDLIHK-NYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLE 260 (968)
T ss_pred CCcchhHHHHHHHHh-----------chhHHHHhhH-HHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccc
Confidence 999999999999886 6678899998 799999999999999999999999999632 1
Q ss_pred ---------------------hhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCC
Q 008746 256 ---------------------SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSG 314 (555)
Q Consensus 256 ---------------------~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~ 314 (555)
..+...+++...++++|.|++|+++++++++++++... ..+++.+|+++|. +
T Consensus 261 ~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~------~~~i~kaLvrLLr-s 333 (968)
T KOG1060|consen 261 DNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ------VTKIAKALVRLLR-S 333 (968)
T ss_pred cCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH------HHHHHHHHHHHHh-c
Confidence 12445678888999999999999999999999988542 2456788998887 5
Q ss_pred CchhHHHHHHHHHHHHhhCCcccccccceeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 008746 315 SPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESI 394 (555)
Q Consensus 315 ~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i 394 (555)
++++||++|+.+..+....|.+|.+|++.||+...|+..+|..||+||..++|+.|+..|+.|++.|+.+.|.+|+..+|
T Consensus 334 ~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV 413 (968)
T KOG1060|consen 334 NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAV 413 (968)
T ss_pred CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCcH-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCCchHHHHHHHHHHh
Q 008746 395 RAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLG 473 (555)
Q Consensus 395 ~~i~~la~~~~~~-~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiG 473 (555)
++||+||.+.-.+ ..|++++++++++....|+.+++.+++.++++.|-.+..++..+.+++ +++.-+.+|++++|++|
T Consensus 414 ~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~ll-dti~vp~ARA~IiWLig 492 (968)
T KOG1060|consen 414 KAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLL-DTILVPAARAGIIWLIG 492 (968)
T ss_pred HHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHh-hhhhhhhhhceeeeeeh
Confidence 9999999986554 469999999999998899999999999999999988777766677775 88889999999999999
Q ss_pred ccccCCCC-hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhccCCCcchhhccccccc
Q 008746 474 EYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQVVFYGFFPPFS 548 (555)
Q Consensus 474 Ey~~~~~~-~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~~~~~d~d~evq~Ra~~~l~ 548 (555)
||+..++. +||++|.++++|.+|+ ++||+++|.+.+|+|..++.+++.+.+++++.+.+|.+-|+||||.++-.
T Consensus 493 e~~e~vpri~PDVLR~laksFs~E~-~evKlQILnL~aKLyl~~~~~~kll~~Yv~~L~~yD~sYDiRDRaRF~r~ 567 (968)
T KOG1060|consen 493 EYCEIVPRIAPDVLRKLAKSFSDEG-DEVKLQILNLSAKLYLTNIDQTKLLVQYVFELARYDLSYDIRDRARFLRQ 567 (968)
T ss_pred hhhhhcchhchHHHHHHHHhhcccc-chhhHHHHHhhhhheEechhhHHHHHHHHHHHhccCCCcchhHHHHHHHH
Confidence 99999875 9999999999999999 99999999999999999998899999999999999999999999987633
No 3
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-79 Score=641.44 Aligned_cols=522 Identities=42% Similarity=0.686 Sum_probs=485.4
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHh
Q 008746 11 PSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNY 90 (555)
Q Consensus 11 ~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~ 90 (555)
++-|....++|+.++|++|.+ ++ .++|++++||+|..|+.|+|+|.+|++|++++++.|.+.||++|+|+..|
T Consensus 4 ~k~F~~~~k~ei~elks~l~s----~~---~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nY 76 (734)
T KOG1061|consen 4 SKYFSTDKKGEIPELKSQLNS----QS---KEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNY 76 (734)
T ss_pred ccccCcchhhhchHHHHHhhh----hh---hhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHh
Confidence 455667779999999999943 33 37999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc
Q 008746 91 AKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (555)
Q Consensus 91 ~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~ 170 (555)
+..+|+.+++++|++.+|..|+||.+|++|+|++|.++.+.+.+.+..++.++++|.+|||||+|+.|+.++|..+|+.+
T Consensus 77 a~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~ 156 (734)
T KOG1061|consen 77 AKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV 156 (734)
T ss_pred hccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHc
Q 008746 171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK 250 (555)
Q Consensus 171 ~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~ 250 (555)
.+.++++.|+.+ +.|+||.|+++|+.+|.+|...+++. ....+.++.++++++.++.+++|+|+.+|+.+.+
T Consensus 157 ~~~gl~~~L~~l-l~D~~p~VVAnAlaaL~eI~e~~~~~-------~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~ 228 (734)
T KOG1061|consen 157 EDSGLVDALKDL-LSDSNPMVVANALAALSEIHESHPSV-------NLLELNPQLINKLLEALNECTEWGQIFILDCLAE 228 (734)
T ss_pred cccchhHHHHHH-hcCCCchHHHHHHHHHHHHHHhCCCC-------CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Confidence 889999999998 58999999999999999998877641 1122456688999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 008746 251 YVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (555)
Q Consensus 251 ~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~ 330 (555)
|.|.++.+++.+.+.+.+.++|.|++|++.+++.+++..+..+.+...++.++.++|..++++ .++++|++|+.+..++
T Consensus 229 y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~-~~e~qyvaLrNi~lil 307 (734)
T KOG1061|consen 229 YVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSS-ESEIQYVALRNINLIL 307 (734)
T ss_pred cCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecc-cchhhHHHHhhHHHHH
Confidence 999999999999999999999999999999999999887766656667788999999988875 5599999999999999
Q ss_pred hhCCcccccccceeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcHHHH
Q 008746 331 MRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAI 410 (555)
Q Consensus 331 ~~~p~~~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~~~~ 410 (555)
+..|++|..+++.|||.++||.|||..|++++..+++..|+.+|+.||.+|..+.|.+|.+++|++||++|.+++++..|
T Consensus 308 ~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~~~c 387 (734)
T KOG1061|consen 308 QKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDC 387 (734)
T ss_pred HhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887779
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCCchHHHHHHHHHHhccccCCCChHHHHHHHH
Q 008746 411 VDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLT 490 (555)
Q Consensus 411 i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~~~~~l~~l~ 490 (555)
++.++++++...+|+++|++.++++++++||...+.+..++..- .+++++|++|++++|++|||+..+++++++++.+.
T Consensus 388 v~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~-~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~ 466 (734)
T KOG1061|consen 388 VSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCEN-LDSLQEPEAKAALIWILGEYAERIENALELLESFL 466 (734)
T ss_pred HHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhccc-ccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHH
Confidence 99999999999999999999999999999999876544444433 37899999999999999999999999999999999
Q ss_pred HhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhccCCC-cchhhccccccccC
Q 008746 491 ENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFH-QVVFYGFFPPFSFP 550 (555)
Q Consensus 491 ~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~~~~~d~d-~evq~Ra~~~l~~~ 550 (555)
++|.+|+ .+||.++||++.|+|.+.|.+++++++.+|..|+.|+| +|+|||+..|+.+-
T Consensus 467 en~~dE~-~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlL 526 (734)
T KOG1061|consen 467 ENFKDET-AEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNPDLRDRGLIYWRLL 526 (734)
T ss_pred hhcccch-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccChhhhhhHHHHHHHh
Confidence 9999999 99999999999999999999999999999999999875 69999999998773
No 4
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-75 Score=604.93 Aligned_cols=510 Identities=16% Similarity=0.195 Sum_probs=429.9
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChH
Q 008746 18 GKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDL 97 (555)
Q Consensus 18 ~~~e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~ 97 (555)
.++|++.||+.|++.. ++...|++++.||+|++|+|||.+++.++.+|+++|++|..||+|||+++.++++++|+
T Consensus 30 I~kE~a~IRa~ire~~-----~d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdv 104 (866)
T KOG1062|consen 30 IQKECAAIRASIREPT-----NDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDL 104 (866)
T ss_pred HHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHH
Confidence 4678999999999843 45678999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchH
Q 008746 98 ALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPP 177 (555)
Q Consensus 98 ~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~ 177 (555)
.+|++|+++|||+|+|.+++|+||.++|+++++||++.+.|.|.+++++++|||||||++|+.|++++.|+.+ +.|++
T Consensus 105 llLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~--e~f~~ 182 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV--EHFVI 182 (866)
T ss_pred HHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH--HHhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 78999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhc------------CCCChhHHHHHH
Q 008746 178 TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI------------KEFSEWAQCLVL 245 (555)
Q Consensus 178 ~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l------------~~~~pw~q~~iL 245 (555)
.-.++ ++|+|+||+.+++..+.++++.+|+.. +... + +.. .+-+.++++ +-++||+|+++|
T Consensus 183 ~~~~l-L~ek~hGVL~~~l~l~~e~c~~~~~~l-~~fr---~-l~~-~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 183 AFRKL-LCEKHHGVLIAGLHLITELCKISPDAL-SYFR---D-LVP-SLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL 255 (866)
T ss_pred HHHHH-HhhcCCceeeeHHHHHHHHHhcCHHHH-HHHH---H-HHH-HHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence 99998 699999999999999999999766411 1000 1 111 122233332 237999999999
Q ss_pred HHHHccCCCChhHHHHHHHHHHHHhc------cCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhH
Q 008746 246 ELVAKYVPLDSNEIFDIMNLLEDRLQ------HANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQS 319 (555)
Q Consensus 246 ~~L~~~~~~~~~~~~~i~~~l~~~L~------s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~r 319 (555)
++|+-+...+++....+-+.|..... +...||+|||+++|+.+.+..+- ....+++|.+||.++|.|+|
T Consensus 256 rlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~L-----rvlainiLgkFL~n~d~Nir 330 (866)
T KOG1062|consen 256 RLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGL-----RVLAINILGKFLLNRDNNIR 330 (866)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchH-----HHHHHHHHHHHhcCCcccee
Confidence 99999998887655555566665554 23468999999999999876432 23357889999999999999
Q ss_pred HHHHHHHHHHHhhCCcccccccc-eeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 008746 320 YAVLSHLHILVMRAPFIFASDYK-HFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVG 398 (555)
Q Consensus 320 y~aL~~l~~l~~~~p~~~~~~~~-~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~ 398 (555)
|+||..+.+.++..|.+++.|.. ++-|+.|.|.+||++|||++++++|++|+..+++||++|+.+.|++|+.+++.+|.
T Consensus 331 YvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~ 410 (866)
T KOG1062|consen 331 YVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIA 410 (866)
T ss_pred eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999988875 45699999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccC-cHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhC-CCCcchHHH-HHhhhcc---cCCCchHHHHHHHHHH
Q 008746 399 KIALQQY-DVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKY-PQWSHDCIA-VVGSISS---QNVQEPKAKAALIWML 472 (555)
Q Consensus 399 ~la~~~~-~~~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~-~~~~~~~~~-~l~~l~~---~~~~~~~~~~~~~wii 472 (555)
.+|++|+ +..|++|+++.+|..+|++|..++|..+..++.+- ++.+++... +...+.. ..++.+....+++|+|
T Consensus 411 ~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~I 490 (866)
T KOG1062|consen 411 ELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCI 490 (866)
T ss_pred HHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHh
Confidence 9999995 56899999999999999999999998877777765 676665321 1111111 1356667789999999
Q ss_pred hccccCCCC-----------hHHHHHHH---HHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhccCCCcc
Q 008746 473 GEYSQDMQD-----------APYILESL---TENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQV 538 (555)
Q Consensus 473 GEy~~~~~~-----------~~~~l~~l---~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~~~~~d~d~e 538 (555)
||||++.-+ ..+++..+ ...+. .+ ..+|+++|+|++|++.+.+. ..+.++.++..+..+.|.|
T Consensus 491 GEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~-s~-~~tk~yal~Al~KLSsr~~s-~~~ri~~lI~~~~~s~~~e 567 (866)
T KOG1062|consen 491 GEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHS-SD-STTKGYALTALLKLSSRFHS-SSERIKQLISSYKSSLDTE 567 (866)
T ss_pred hhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhcc-ch-HHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHhcccccHH
Confidence 999976532 24555444 44442 23 89999999999999999984 3677999999999999999
Q ss_pred hhhcccccccc
Q 008746 539 VFYGFFPPFSF 549 (555)
Q Consensus 539 vq~Ra~~~l~~ 549 (555)
+||||+||-.+
T Consensus 568 lQQRa~E~~~l 578 (866)
T KOG1062|consen 568 LQQRAVEYNAL 578 (866)
T ss_pred HHHHHHHHHHH
Confidence 99999999655
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=3.6e-74 Score=627.94 Aligned_cols=507 Identities=33% Similarity=0.519 Sum_probs=439.1
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHH
Q 008746 25 LKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINF 104 (555)
Q Consensus 25 ~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~ 104 (555)
+.+++++..++.. .+.++|+++++|+++++++|+|++++|++++++++|+|++.||+||+|++.+.+.+||.++|++|+
T Consensus 5 ~~~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~ 83 (526)
T PF01602_consen 5 ISQELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINS 83 (526)
T ss_dssp HHHHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 4444555444443 346789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHh
Q 008746 105 LQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML 184 (555)
Q Consensus 105 l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll 184 (555)
++|||+|+||++|++||+++|+++++++++.+.+.|.+++.|++|||||+|++|++++|+.+|+.+... |.+.+..+ +
T Consensus 84 l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~l-L 161 (526)
T PF01602_consen 84 LQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQL-L 161 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHH-T
T ss_pred HHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhh-c
Confidence 999999999999999999999999999999999999999999999999999999999999999998333 89999998 6
Q ss_pred cCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHH--HHH
Q 008746 185 NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI--FDI 262 (555)
Q Consensus 185 ~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~--~~i 262 (555)
.|+|++|+.+|+.++.++ +.++.. ...+++ ..++.|++.++.++||+|+.++++|..|.+.++.+. ..+
T Consensus 162 ~d~~~~V~~~a~~~l~~i-~~~~~~-------~~~~~~-~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~ 232 (526)
T PF01602_consen 162 SDKDPSVVSAALSLLSEI-KCNDDS-------YKSLIP-KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRI 232 (526)
T ss_dssp THSSHHHHHHHHHHHHHH-HCTHHH-------HTTHHH-HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHH-ccCcch-------hhhhHH-HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHH
Confidence 999999999999999999 322210 012333 367777877899999999999999999999988888 789
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhC-Cccccccc
Q 008746 263 MNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA-PFIFASDY 341 (555)
Q Consensus 263 ~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~-p~~~~~~~ 341 (555)
++.+.+++++.+++|++||++++.++.+..+ .+..+.++|.+|++++++|+||++|+.+..++..+ |.++..+.
T Consensus 233 i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~ 307 (526)
T PF01602_consen 233 IEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSL 307 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHH
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhh
Confidence 9999999999999999999999999887543 34567788999999999999999999999999988 45565566
Q ss_pred ceeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHhcccCc-HHHHHHHHHHHhh
Q 008746 342 KHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV-DIPIARESIRAVGKIALQQYD-VNAIVDRLLQFLE 419 (555)
Q Consensus 342 ~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~-d~~~~~~~i~~i~~la~~~~~-~~~~i~~ll~ll~ 419 (555)
..|++..++|.+||++|+++|+.++|++|+..|+++|.+|+.+. |++++++++++|+.++.+|++ ..|+++++++++.
T Consensus 308 ~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~ 387 (526)
T PF01602_consen 308 ILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLE 387 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHH
T ss_pred hhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhh
Confidence 66777779999999999999999999999999999999999555 889999999999999999987 5899999999999
Q ss_pred cccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCCchHHHHHHHHHHhccccCCCC---hHHHHHHHHHhhhcC
Q 008746 420 MEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD---APYILESLTENWEEE 496 (555)
Q Consensus 420 ~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~---~~~~l~~l~~~~~~e 496 (555)
.+++++..++|..+++++.++|+.++.++..+.+.+ +++.+++++++++|++|||++..++ ++++++.+.+.|..+
T Consensus 388 ~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l-~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~ 466 (526)
T PF01602_consen 388 ISGDYVSNEIINVIRDLLSNNPELREKILKKLIELL-EDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEE 466 (526)
T ss_dssp CTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHH-TSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTS
T ss_pred hccccccchHHHHHHHHhhcChhhhHHHHHHHHHHH-HHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccc
Confidence 999999999999999999999998877665565554 5588999999999999999999988 999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHhcCCc-hhH-HHHHHHHHHhcc-CCCcchhhccccccccC
Q 008746 497 PSAEVRLHLLTAVMKCFFKRPP-ETQ-KVLGAALAAGLA-DFHQVVFYGFFPPFSFP 550 (555)
Q Consensus 497 ~~~~vr~~~L~a~~Kl~~~~p~-~~~-~~l~~vl~~~~~-d~d~evq~Ra~~~l~~~ 550 (555)
+ +.||.+++++++|++.++|+ +.. .+++.+.+.+.+ |.|+||||||++|+.+-
T Consensus 467 ~-~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 467 S-PEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp H-HHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred c-HHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 8 99999999999999999985 233 555555555543 77999999999998763
No 6
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-71 Score=570.72 Aligned_cols=515 Identities=19% Similarity=0.230 Sum_probs=438.4
Q ss_pred CCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCCh
Q 008746 17 SGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPD 96 (555)
Q Consensus 17 ~~~~e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e 96 (555)
+...|+++||++|+.. ..-+|+ +||++++|++|++++|||++++.++.+++++|+.+.+|.+||++++.+.++++|
T Consensus 32 RInkELanIRskFk~~--K~L~gY--qkKKYV~KLlyI~llg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~d 107 (938)
T KOG1077|consen 32 RINKELANIRSKFKGD--KTLDGY--QKKKYVCKLLYIYLLGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSD 107 (938)
T ss_pred HHHHHHHHHHHHhccc--cccchh--hhHHHHHHHHHHHHhcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchH
Confidence 3467888999999863 122343 688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCC--CChHHHHHHHHHHHHHhhhCCCcccCCC
Q 008746 97 LALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKD--NNSYVRTVAVIGVLKLYHISAPTCIDAD 174 (555)
Q Consensus 97 ~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d--~~~~VRk~A~lal~kl~~~~p~~~~~~~ 174 (555)
++-+++|+++|||.+.||...++||+++|++|..++++.+.++|-++|.+ +.++|||+||+|++++|+.+|+.+...+
T Consensus 108 l~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~ 187 (938)
T KOG1077|consen 108 LMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGE 187 (938)
T ss_pred HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhh
Confidence 99999999999999999999999999999999999999999999999865 5689999999999999999999996668
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHh---h----------cCCCChhHH
Q 008746 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN---R----------IKEFSEWAQ 241 (555)
Q Consensus 175 ~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~---~----------l~~~~pw~q 241 (555)
|...+..+ ++|.|.+|..++..++..+++.+|..+-. |-. ..+.+|.. . ...++||+|
T Consensus 188 W~~riv~L-L~D~~~gv~ta~~sLi~~lvk~~p~~yk~-~~~-------~avs~L~riv~~~~t~~qdYTyy~vP~PWL~ 258 (938)
T KOG1077|consen 188 WAQRIVHL-LDDQHMGVVTAATSLIEALVKKNPESYKT-CLP-------LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ 258 (938)
T ss_pred HHHHHHHH-hCccccceeeehHHHHHHHHHcCCHHHhh-hHH-------HHHHHHHHHHhhcccchhhceeecCCChHHH
Confidence 99999998 69999999999999999999988853211 111 12333322 2 123799999
Q ss_pred HHHHHHHHccC-CCChhHHHHHHHHHHHHhcc--------------CchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Q 008746 242 CLVLELVAKYV-PLDSNEIFDIMNLLEDRLQH--------------ANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAP 306 (555)
Q Consensus 242 ~~iL~~L~~~~-~~~~~~~~~i~~~l~~~L~s--------------~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~ 306 (555)
++++++|..|. |.|+.....+.+.+..+|.. ...+|+|||+++++++....+ ++.+..+.
T Consensus 259 vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~-----ll~~~~~~ 333 (938)
T KOG1077|consen 259 VKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPE-----LLSRAVNQ 333 (938)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHH-----HHHHHHHH
Confidence 99999999994 33555556666666665532 235899999999999976532 45666778
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhCCc--ccccccceee-ecc-CCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHh
Q 008746 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPF--IFASDYKHFY-CQY-NEPSYVKKLKLEMLTAVANESNTYEIVTELCEYA 382 (555)
Q Consensus 307 L~~ll~~~~~~~ry~aL~~l~~l~~~~p~--~~~~~~~~f~-~~~-~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~ 382 (555)
|..|++++++|+||+||+.+..++...+. .++.|.+.++ .+. +.|.+||++++|+||.||+.+|++.||.||+.|+
T Consensus 334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL 413 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYL 413 (938)
T ss_pred HHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence 89999999999999999999999988654 4667776443 334 8889999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHhcccCc-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhc-ccCCC
Q 008746 383 ANVDIPIARESIRAVGKIALQQYD-VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSIS-SQNVQ 460 (555)
Q Consensus 383 ~~~d~~~~~~~i~~i~~la~~~~~-~~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~-~~~~~ 460 (555)
.+.|+.++++++.+++.+|+||+. .+||+++++++++.+|+++++|+|..+.+++.++++.++++...+.+.+ ...+.
T Consensus 414 ~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~h 493 (938)
T KOG1077|consen 414 ETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACH 493 (938)
T ss_pred hhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999975 6899999999999999999999999999999999999987655554443 22333
Q ss_pred chHHHHHHHHHHhccccCCCC-----hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhccCC
Q 008746 461 EPKAKAALIWMLGEYSQDMQD-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADF 535 (555)
Q Consensus 461 ~~~~~~~~~wiiGEy~~~~~~-----~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~~~~~d~ 535 (555)
+.-+ ++..|++||||.++.+ +...|..+...|...+ +.+|..+||+..|++...| |.++.++.+++...+..
T Consensus 494 E~mV-KvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s-~~tr~lLLtTyiKl~nl~P-Ei~~~v~~vFq~~~n~~ 570 (938)
T KOG1077|consen 494 ENMV-KVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCS-PVTRALLLTTYIKLINLFP-EIKSNVQKVFQLYSNLI 570 (938)
T ss_pred HHHH-HhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHhhCh-hhhHHHHHHHHhhcccC
Confidence 3333 4569999999999954 6678899999999998 9999999999999999998 67999999999999999
Q ss_pred CcchhhccccccccCcc
Q 008746 536 HQVVFYGFFPPFSFPQV 552 (555)
Q Consensus 536 d~evq~Ra~~~l~~~~~ 552 (555)
|+|+||||+|||.+.+.
T Consensus 571 D~ElQqRa~EYLql~k~ 587 (938)
T KOG1077|consen 571 DVELQQRAVEYLQLSKL 587 (938)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999988554
No 7
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-58 Score=475.82 Aligned_cols=510 Identities=17% Similarity=0.224 Sum_probs=422.4
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChH
Q 008746 18 GKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDL 97 (555)
Q Consensus 18 ~~~e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~ 97 (555)
....+.|+|.++.+ .+...|.+++.|+.|+.|+|+|++|.-+++++.|+|..+..||+||+++..-++.+.|+
T Consensus 34 is~~l~e~r~E~k~-------~d~~~k~~a~~kl~yl~mlg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdv 106 (877)
T KOG1059|consen 34 ISQCLEEIRQELKS-------DDLNVKSNAVLKLTYLEMLGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDV 106 (877)
T ss_pred HHHHHHHHHHHhhc-------hhhhhhHHHHHHHHHHHHHcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccH
Confidence 34557788888887 56678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchH
Q 008746 98 ALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPP 177 (555)
Q Consensus 98 ~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~ 177 (555)
++|.+|+++||++|+|.+-.+.||..|+.+.+|++++.+.+.|..+++++.|||||+|++.++|+|.+||+.+ ....+
T Consensus 107 lmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl--r~~Fp 184 (877)
T KOG1059|consen 107 LMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL--RPCFP 184 (877)
T ss_pred HHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH--hhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 66677
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChh
Q 008746 178 TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN 257 (555)
Q Consensus 178 ~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~ 257 (555)
.|.+- +.|+||+|+.+|+.+++|++..+|..+.... |.|.+|+. ...+.|.-++++++++.+.|-+|.
T Consensus 185 rL~Ek-LeDpDp~V~SAAV~VICELArKnPknyL~LA---------P~ffkllt--tSsNNWmLIKiiKLF~aLtplEPR 252 (877)
T KOG1059|consen 185 RLVEK-LEDPDPSVVSAAVSVICELARKNPQNYLQLA---------PLFYKLLV--TSSNNWVLIKLLKLFAALTPLEPR 252 (877)
T ss_pred HHHHh-ccCCCchHHHHHHHHHHHHHhhCCccccccc---------HHHHHHHh--ccCCCeehHHHHHHHhhccccCch
Confidence 77777 6999999999999999999999997544322 35666543 367899999999999999999999
Q ss_pred HHHHHHHHHHHHhccCch-HHHHHHHHHHHHhcCCcc--hhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCC
Q 008746 258 EIFDIMNLLEDRLQHANG-AVVLSTIKVFLHLTLSMT--DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP 334 (555)
Q Consensus 258 ~~~~i~~~l~~~L~s~~~-aV~~eai~~i~~l~~~~~--~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p 334 (555)
.-.++++.+..+++++.+ |++|||+++++....... + ..+....++.-|..|+.++|+|+||++|-++..+...+|
T Consensus 253 LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d-~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp 331 (877)
T KOG1059|consen 253 LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD-HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHP 331 (877)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC-cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCH
Confidence 999999999999998876 699999999986633211 1 112223344557788999999999999999999999999
Q ss_pred ccccccccee-eeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHH-HHhcc-cC---cH
Q 008746 335 FIFASDYKHF-YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDI-PIARESIRAVG-KIALQ-QY---DV 407 (555)
Q Consensus 335 ~~~~~~~~~f-~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~-~~~~~~i~~i~-~la~~-~~---~~ 407 (555)
..++.|.+.+ .|+.|.|++||.+|||+|++|++++|+..||+.|+.|+..++. .|+.+++..|- .|+.. |- +.
T Consensus 332 ~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdF 411 (877)
T KOG1059|consen 332 KAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDF 411 (877)
T ss_pred HHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhH
Confidence 9999998854 5999999999999999999999999999999999999988766 79988877764 45443 43 34
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhccc-----C----CCchHHHHHHHHHHhccccC
Q 008746 408 NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQ-----N----VQEPKAKAALIWMLGEYSQD 478 (555)
Q Consensus 408 ~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~-----~----~~~~~~~~~~~wiiGEy~~~ 478 (555)
.||+.++.++....|..--..+...+.++..+.|..++-.+..+..++.+ + -+-.++..+++|++|||++.
T Consensus 412 EWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ 491 (877)
T KOG1059|consen 412 EWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEF 491 (877)
T ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHH
Confidence 79999999998877644444555678888888888887655445554421 1 12357888999999999999
Q ss_pred CCChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcC-----Cch----hH---HHHHHHHHHhccCCCcchhhccccc
Q 008746 479 MQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKR-----PPE----TQ---KVLGAALAAGLADFHQVVFYGFFPP 546 (555)
Q Consensus 479 ~~~~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~-----p~~----~~---~~l~~vl~~~~~d~d~evq~Ra~~~ 546 (555)
..++.++++.+.+.-.+--+..++...+.+++|+|+.. |.. .. +.+..-|.....+.|.|||+||.+.
T Consensus 492 ven~~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~ 571 (877)
T KOG1059|consen 492 VENPNDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEV 571 (877)
T ss_pred hhCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHH
Confidence 99999999999876543333899999999999999853 111 11 2222335566778999999997665
Q ss_pred ccc
Q 008746 547 FSF 549 (555)
Q Consensus 547 l~~ 549 (555)
+.+
T Consensus 572 ~~l 574 (877)
T KOG1059|consen 572 LEL 574 (877)
T ss_pred HHH
Confidence 443
No 8
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=1e-57 Score=488.07 Aligned_cols=494 Identities=29% Similarity=0.450 Sum_probs=413.6
Q ss_pred CChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHH
Q 008746 39 GIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRG 118 (555)
Q Consensus 39 ~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~ 118 (555)
+++.+|+++||++|..|+.|+|++.+|++|+|.+.+.|.++|||+|+||..|.+.+|+.++|++|+++||++|+||++||
T Consensus 31 ~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~ 110 (757)
T COG5096 31 SNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRG 110 (757)
T ss_pred cChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHH
Q 008746 119 LALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSA 198 (555)
Q Consensus 119 lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~ 198 (555)
+|||+||.++.+++++.++++|+++++|++|||||+|++|+.++|+.+|+.+.+.+....+..+ ..|+||.|..+|+.+
T Consensus 111 ~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l-~~D~dP~Vi~nAl~s 189 (757)
T COG5096 111 FALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKEL-VADSDPIVIANALAS 189 (757)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHH-hhCCCchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999555567777776 699999999999999
Q ss_pred HHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcC-----CCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccC
Q 008746 199 LQEIWSLEASTSEEASREREALISKPVIYYLLNRIK-----EFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHA 273 (555)
Q Consensus 199 L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~-----~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~ 273 (555)
|.++.+.... .+.+ .+...+.++. ...+|.+..++..|..+.+.++.+...+.+.+...+++.
T Consensus 190 l~~i~~e~a~----------~~~~--~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~ 257 (757)
T COG5096 190 LAEIDPELAH----------GYSL--EVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHN 257 (757)
T ss_pred HHHhchhhhh----------hHHH--HHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhC
Confidence 9998654110 1111 1222222222 124999999999999999999988899999999999999
Q ss_pred chHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCcHH
Q 008746 274 NGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSY 353 (555)
Q Consensus 274 ~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~~~~~dd~~ 353 (555)
|+.|+.-+++.++.+....+.- .+.....+++..++..+.+.+.|+........+...|..+..-.+.|+|.+++|.+
T Consensus 258 n~~vl~~av~~i~~l~~~~~~~--~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~ 335 (757)
T COG5096 258 NAEVLLIAVKVILRLLVFLPSN--NLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIY 335 (757)
T ss_pred cHHHHHHHHHHHHHHhhhhccc--cHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHH
Confidence 9999999999998877654432 13445566677777654467888888888888889999888888889999999999
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHhcccCc-HHHHHHHHHHHhh---cccchhHH
Q 008746 354 VKKLKLEMLTAVANESNTYEIVTELCEYAAN--VDIPIARESIRAVGKIALQQYD-VNAIVDRLLQFLE---MEKDYVTA 427 (555)
Q Consensus 354 Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~--~d~~~~~~~i~~i~~la~~~~~-~~~~i~~ll~ll~---~~~~~v~~ 427 (555)
++..+++++..+++..|...++.|+.+|+.+ .|++++.+++++||.++.+.+. ...|++.++.++. ..++|+..
T Consensus 336 ~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~g~~~~~~Yi~~ 415 (757)
T COG5096 336 IKLEKLDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLEGVWIRGSYIVQ 415 (757)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccchhhccchhhh
Confidence 9999999999999999999999999999999 7999999999999999999865 4679999999999 78899999
Q ss_pred HH-----HHHHH---HHHHhCCCCcchH-HHHHhhhcccCCC----chHHHHHH-----HHHHhccccCCCC-hHHHHHH
Q 008746 428 EA-----LVLVK---DLLRKYPQWSHDC-IAVVGSISSQNVQ----EPKAKAAL-----IWMLGEYSQDMQD-APYILES 488 (555)
Q Consensus 428 e~-----i~~i~---~ii~~~~~~~~~~-~~~l~~l~~~~~~----~~~~~~~~-----~wiiGEy~~~~~~-~~~~l~~ 488 (555)
|+ |.+++ .+++.+|+-..+. ...+..+ .+.++ .|.++.++ +|++|||+..++. .|+.++.
T Consensus 416 e~~~~~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~-~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~r~~~~~l~~ 494 (757)
T COG5096 416 EVRIVDCISVIRISVLVLRILPNEYPKILLRGLYAL-EETLELQSREPRAKSVTDKYLGAWLLGEFSDIIPRLEPELLRI 494 (757)
T ss_pred hhcccceeeeeehhcchhhhcCCcchhhhHHHHHHH-HHHhhccccCcHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHH
Confidence 88 66655 5667766652121 1112222 12233 68888888 9999999999976 5699999
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHH----HHHHHHHHhccC-CCcchhhcccccccc
Q 008746 489 LTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQK----VLGAALAAGLAD-FHQVVFYGFFPPFSF 549 (555)
Q Consensus 489 l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~----~l~~vl~~~~~d-~d~evq~Ra~~~l~~ 549 (555)
....|.+|+ .+||.+++++.+|+++..+..... .-+.++..|... .++|+||||..|..+
T Consensus 495 ~~~~~~~E~-levq~~Il~~svkl~~~~~~~~~~~~~~~d~~v~~~~~~~v~~~DlRDra~my~~~ 559 (757)
T COG5096 495 AISNFVDET-LEVQYTILMSSVKLIANSIRKAKQCNSELDQDVLRRCFDYVLVPDLRDRARMYSRL 559 (757)
T ss_pred HHHHhcccc-hHHHHHHHHHHHHHHHhCcHhhhhccchhccHHHHHHHhccCChhHHHHHHHHHHH
Confidence 999999999 999999999999999988753333 344666766654 468999999987554
No 9
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-49 Score=407.77 Aligned_cols=428 Identities=22% Similarity=0.339 Sum_probs=367.8
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHHhhh-hcCCCCchhHHHHHHHHHHhcCCCCh---
Q 008746 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPD--- 96 (555)
Q Consensus 21 e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~-~~~s~~~~~Krl~yl~l~~~~~~~~e--- 96 (555)
.-.+++.+|++ ++++.|.++||++|++|..|++++.++++||+ .+.+.|+++||+.|+||..+.+-++|
T Consensus 21 ~~~~ik~~Lek-------~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl 93 (948)
T KOG1058|consen 21 SEDEIKEKLEK-------GDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKL 93 (948)
T ss_pred chHHHHHHHhc-------CChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCccc
Confidence 34588999998 78899999999999999999999999999998 78999999999999999999887774
Q ss_pred --HHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCC
Q 008746 97 --LALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDAD 174 (555)
Q Consensus 97 --~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~ 174 (555)
.++|++|+++|||+|||+++|+..||+||+++.||+.+.++|.|+.++.|+++||||.|++|+..+|+....++ ++
T Consensus 94 ~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~--pD 171 (948)
T KOG1058|consen 94 LHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLI--PD 171 (948)
T ss_pred HHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhc--CC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999988887 89
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHH---hhcCCCChhHHHHHHHHHHcc
Q 008746 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLL---NRIKEFSEWAQCLVLELVAKY 251 (555)
Q Consensus 175 ~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~---~~l~~~~pw~q~~iL~~L~~~ 251 (555)
..+.+...|..|.||.+..+|+..|..+.+.. .+.+|. .+++..++-+|..+++++++.
T Consensus 172 apeLi~~fL~~e~DpsCkRNAFi~L~~~D~Er------------------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv 233 (948)
T KOG1058|consen 172 APELIESFLLTEQDPSCKRNAFLMLFTTDPER------------------ALNYLLSNIDQIPSFNDSLQLVIVELIRKV 233 (948)
T ss_pred hHHHHHHHHHhccCchhHHHHHHHHHhcCHHH------------------HHHHHHhhHhhccCccHHHHHHHHHHHHHH
Confidence 99999999889999999999999988764321 233333 456778899999999999999
Q ss_pred CCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHHH
Q 008746 252 VPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTL-VSSGSPEQSYAVLSHLHILV 330 (555)
Q Consensus 252 ~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~l-l~~~~~~~ry~aL~~l~~l~ 330 (555)
+..+|.+...+++.+..+|++.+++|+|||+-++..+......+ +...+.++.+ ...+|.|++.+.|+.+..+-
T Consensus 234 ~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~al-----k~Aa~~~i~l~~kesdnnvklIvldrl~~l~ 308 (948)
T KOG1058|consen 234 CLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTAL-----KAAASTYIDLLVKESDNNVKLIVLDRLSELK 308 (948)
T ss_pred HhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHH-----HHHHHHHHHHHHhccCcchhhhhHHHHHHHh
Confidence 98899999999999999999999999999999998887654333 3334444444 45689999999999999888
Q ss_pred hhCCccccccccee-eeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhh-cC------CHHHHHHHHHHHHHHhc
Q 008746 331 MRAPFIFASDYKHF-YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAA-NV------DIPIARESIRAVGKIAL 402 (555)
Q Consensus 331 ~~~p~~~~~~~~~f-~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~-~~------d~~~~~~~i~~i~~la~ 402 (555)
..+..+++..+..+ -++...|..+|+++|++.+.++...|+++|+..|+.-+. .. +.+||+.++++|+.||.
T Consensus 309 ~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav 388 (948)
T KOG1058|consen 309 ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV 388 (948)
T ss_pred hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh
Confidence 77767776655433 466788899999999999999999999999999875332 22 24699999999999999
Q ss_pred ccCcH-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCCchHHHHHHHHHHhccccCCCC
Q 008746 403 QQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD 481 (555)
Q Consensus 403 ~~~~~-~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~ 481 (555)
+||+. ...+..+++++...+......++.+++..++++|+++..+++.+..- ++.+..+.+..+++|++|||+.-..+
T Consensus 389 ~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~-~~~irS~ki~rgalwi~GeYce~~~~ 467 (948)
T KOG1058|consen 389 KFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLET-FPQIRSSKICRGALWILGEYCEGLSE 467 (948)
T ss_pred cChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHh-hhhhcccccchhHHHHHHHHHhhhHH
Confidence 99995 57899999999988888888999999999999999986644333322 35778888889999999999987653
No 10
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-36 Score=313.90 Aligned_cols=505 Identities=15% Similarity=0.206 Sum_probs=417.4
Q ss_pred CCCCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCC-----CcchhHHHhhhhcCCCCchhHHHHHHH
Q 008746 12 SPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGI-----DVSAVFGEMVMCSATSDIVLKKMCYLY 86 (555)
Q Consensus 12 ~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~-----d~s~lf~~vi~~~~s~~~~~Krl~yl~ 86 (555)
+.+++-.|+.+.+--..|.+ + +-+..+++.++.|++|+..+|+ +...+|+.+.|+++|+|..+||++|++
T Consensus 13 ~~f~~l~k~~vlqe~r~fne---s--pvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~ 87 (865)
T KOG1078|consen 13 NVFQHLEKTTVLQEARTFNE---S--PVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLA 87 (865)
T ss_pred ccccChhHHHHHHHHHhhcC---C--CCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 44555555554322223333 2 2236788899999999999995 556689999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhC
Q 008746 87 VGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS 166 (555)
Q Consensus 87 l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~ 166 (555)
+........|. +++++++.||....++.+|+.|||+|+.+-+..+.......+++++.|++|.|+-.|...-++++..+
T Consensus 88 Ikels~isedv-iivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~ 166 (865)
T KOG1078|consen 88 IKELSKISEDV-IIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPIS 166 (865)
T ss_pred Hhhccccchhh-hhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhccc
Confidence 99999887776 89999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhc---CCCChhHHHH
Q 008746 167 APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI---KEFSEWAQCL 243 (555)
Q Consensus 167 p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l---~~~~pw~q~~ 243 (555)
++.+ ..|.+.+... .++.|..|...|+.+|+.|-+++- . .+.+++... .-.+|..++.
T Consensus 167 ~~~v--krw~neiqea-~~s~~~m~QyHalglLyqirk~dr----------l------a~sklv~~~~~~~~~~~~A~~~ 227 (865)
T KOG1078|consen 167 FDVV--KRWANEVQEA-VNSDNIMVQYHALGLLYQIRKNDR----------L------AVSKLVQKFTRGSLKSPLAVCM 227 (865)
T ss_pred HHHH--HHHHHhhhhc-cCcHHHHHHHHHHHHHHHHHhhhH----------H------HHHHHHHHHccccccchhHHHH
Confidence 8887 7899999998 466788999999999999866421 1 233333332 2368899999
Q ss_pred HHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008746 244 VLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVL 323 (555)
Q Consensus 244 iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL 323 (555)
+++.-.....+++.....+.+.+...++|...+|.+||++.+..+..-.+. + +......|..|+++..+-+||.|.
T Consensus 228 lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~-l~pavs~Lq~flssp~~~lRfaAv 303 (865)
T KOG1078|consen 228 LIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---E-LAPAVSVLQLFLSSPKVALRFAAV 303 (865)
T ss_pred HHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---h-cchHHHHHHHHhcCcHHHHHHHHH
Confidence 999888877666544556778888999999999999999999988653321 1 122455677889998899999999
Q ss_pred HHHHHHHhhCCccc---ccccceeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 008746 324 SHLHILVMRAPFIF---ASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKI 400 (555)
Q Consensus 324 ~~l~~l~~~~p~~~---~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~l 400 (555)
+.|.+++..+|... ..+++.+. .|...+|...|+..|++-.+++|++.+++.+-.|+.+.+++|+.-++++|..+
T Consensus 304 RtLnkvAm~~P~~v~~cN~elE~lI--td~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sL 381 (865)
T KOG1078|consen 304 RTLNKVAMKHPQAVTVCNLDLESLI--TDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSL 381 (865)
T ss_pred HHHHHHHHhCCccccccchhHHhhh--cccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHH
Confidence 99999999999753 44555543 44457899999999999999999999999999999999999999999999999
Q ss_pred hcccCcH-HHHHHHHHHHhhccc-chhHHHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCCchHHHHHHHHHHhccccC
Q 008746 401 ALQQYDV-NAIVDRLLQFLEMEK-DYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQD 478 (555)
Q Consensus 401 a~~~~~~-~~~i~~ll~ll~~~~-~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~ 478 (555)
..+||.. ..+++++-.+|...| =......+.++..++..+|+..+..+..++..+ ++++....-..++.++|..|..
T Consensus 382 c~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI-EDce~~~i~~rILhlLG~EgP~ 460 (865)
T KOG1078|consen 382 CLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFI-EDCEFTQIAVRILHLLGKEGPK 460 (865)
T ss_pred HhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH-HhccchHHHHHHHHHHhccCCC
Confidence 9999974 568888888887754 334456677888889999998877666677665 6677777766789999999999
Q ss_pred CCChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhccCCCcchhhccccccccC
Q 008746 479 MQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQVVFYGFFPPFSFP 550 (555)
Q Consensus 479 ~~~~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~~~~~d~d~evq~Ra~~~l~~~ 550 (555)
.+++..++|.++++...|. ..||+.+.++++|+....+ ..++-+..+|++|.+|.|.||||||-.|+..+
T Consensus 461 a~~Pskyir~iyNRviLEn-~ivRaaAv~alaKfg~~~~-~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l 530 (865)
T KOG1078|consen 461 APNPSKYIRFIYNRVILEN-AIVRAAAVSALAKFGAQDV-VLLPSILVLLKRCLNDSDDEVRDRATFYLKNL 530 (865)
T ss_pred CCCcchhhHHHhhhhhhhh-hhhHHHHHHHHHHHhcCCC-CccccHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 9999999999999999999 9999999999999996665 45667888999999999999999999998764
No 11
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.7e-33 Score=279.62 Aligned_cols=487 Identities=15% Similarity=0.149 Sum_probs=378.9
Q ss_pred ChHHHHHHHHHHHHHHhcCCC-----cchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCCh
Q 008746 40 IDDSKRELFKKVISYMTIGID-----VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDP 114 (555)
Q Consensus 40 ~~~~k~~~l~kli~~~~~G~d-----~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~ 114 (555)
+..+.+.++.++.|+...|+- +..+|+.+.|+++++|..+|..+|+++..+.....|+ +|.+|+++||++...|
T Consensus 37 s~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedv-lm~tssiMkD~~~g~~ 115 (898)
T COG5240 37 STRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDV-LMGTSSIMKDLNGGVP 115 (898)
T ss_pred ChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhh-hHHHHHHHHhhccCCc
Confidence 356788899999999999964 3568999999999999999999999999999887776 9999999999998877
Q ss_pred -HHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhc--------
Q 008746 115 -MIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLN-------- 185 (555)
Q Consensus 115 -~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~-------- 185 (555)
.++..|+|.|..+-+.+++......+..+..++++-+|.+|+...++++..+-+.. ..|.+...+..++
T Consensus 116 ~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~--~rw~ne~qeav~~l~q~p~~~ 193 (898)
T COG5240 116 DDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQT--KRWLNETQEAVLDLKQFPNQH 193 (898)
T ss_pred cccccHHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHH--HHHHHHHHHHHhhHhhCcCcc
Confidence 99999999999999999999999999999999999999998888877764433332 3344333322110
Q ss_pred -------CCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhH
Q 008746 186 -------DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE 258 (555)
Q Consensus 186 -------d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~ 258 (555)
..+|.-...|+.+|..+-+++. ...+ + .++++.....-.+..+-+.+++.......++++.
T Consensus 194 ~n~gy~Pn~~~isqYHalGlLyq~kr~dk----------ma~l-k-lv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~ 261 (898)
T COG5240 194 GNEGYEPNGNPISQYHALGLLYQSKRTDK----------MAQL-K-LVEHFRGNASMKNQLAGVLLVRATVELLKENSQA 261 (898)
T ss_pred CCcccCCCCChHHHHHHHHHHHHHhcccH----------HHHH-H-HHHHhhcccccccchhheehHHHHHHHHHhChHH
Confidence 1344445555555555543321 0000 1 2333322222223334445555555555556655
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcc--
Q 008746 259 IFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI-- 336 (555)
Q Consensus 259 ~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~-- 336 (555)
...+.+.+..-+++...+|-+|++|.++.+.... +..+.++..+..|..||.+...-.||.|++.+.+++..+|..
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee
Confidence 5556666666677778899999999998865422 223445556677889999888889999999999999999984
Q ss_pred -cccccceeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCc-HHHHHHHH
Q 008746 337 -FASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD-VNAIVDRL 414 (555)
Q Consensus 337 -~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~-~~~~i~~l 414 (555)
+.+.++.+. .|....|..-|+.-|.+-.+++|++.+++.+-.|+.+.++.|+.-+|.++..++.+||. +..+++++
T Consensus 340 vcN~evEsLI--sd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL 417 (898)
T COG5240 340 VCNKEVESLI--SDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFL 417 (898)
T ss_pred ecChhHHHHh--hcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHH
Confidence 345555543 45567789999999999999999999999999999999999999999999999999997 45799999
Q ss_pred HHHhhccc-chhHHHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCCchHHHHHHHHHHhccccCCCChHHHHHHHHHhh
Q 008746 415 LQFLEMEK-DYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENW 493 (555)
Q Consensus 415 l~ll~~~~-~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~~~~~l~~l~~~~ 493 (555)
...|.+.| -....-.+.++.+++...|+..+.+++.++..+ ++++.+++...++.++|+.|...+++..+.|+++++.
T Consensus 418 ~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fI-EDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~ 496 (898)
T COG5240 418 GSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFI-EDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRL 496 (898)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH-hhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHH
Confidence 88887655 445566778899999999999888877787775 7889999988899999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHhccCCCcchhhcccccc
Q 008746 494 EEEPSAEVRLHLLTAVMKCFFKRP-PETQKVLGAALAAGLADFHQVVFYGFFPPF 547 (555)
Q Consensus 494 ~~e~~~~vr~~~L~a~~Kl~~~~p-~~~~~~l~~vl~~~~~d~d~evq~Ra~~~l 547 (555)
..|. ..||.+++.++.|+..... .-....+..+|++|.+|.|.||||||-.-+
T Consensus 497 iLEN-~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l 550 (898)
T COG5240 497 ILEN-NIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLL 550 (898)
T ss_pred HHhh-hHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 9999 9999999999999976532 234667888999999999999999976543
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.54 E-value=6.7e-13 Score=145.19 Aligned_cols=416 Identities=17% Similarity=0.168 Sum_probs=281.2
Q ss_pred hhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC--ChhhhHHH-HHHHHhhccC
Q 008746 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEY-LVGPLGLGLK 145 (555)
Q Consensus 69 i~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i--~~~ei~~~-l~~~i~~~l~ 145 (555)
.+=+.++|+..+-++--+++.+. ++|++--+.+.+.+-+.|++|+||..|+.++.++ ..|+.++. +.+.+.+++.
T Consensus 85 ~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~ 162 (526)
T PF01602_consen 85 QKDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLS 162 (526)
T ss_dssp HHHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTT
T ss_pred HHhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhcc
Confidence 35677889989988888888875 7888778889999999999999999999999988 45788777 7899999999
Q ss_pred CCChHHHHHHHHHHHHHhhhCC----CcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhc
Q 008746 146 DNNSYVRTVAVIGVLKLYHISA----PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALI 221 (555)
Q Consensus 146 d~~~~VRk~A~lal~kl~~~~p----~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll 221 (555)
|++|-|+..|+.++..+ +..| ..+ +.+...+.++ +.+.+|.+...++..+..+.+.++... +.
T Consensus 163 d~~~~V~~~a~~~l~~i-~~~~~~~~~~~--~~~~~~L~~~-l~~~~~~~q~~il~~l~~~~~~~~~~~-----~~---- 229 (526)
T PF01602_consen 163 DKDPSVVSAALSLLSEI-KCNDDSYKSLI--PKLIRILCQL-LSDPDPWLQIKILRLLRRYAPMEPEDA-----DK---- 229 (526)
T ss_dssp HSSHHHHHHHHHHHHHH-HCTHHHHTTHH--HHHHHHHHHH-HTCCSHHHHHHHHHHHTTSTSSSHHHH-----HH----
T ss_pred CCcchhHHHHHHHHHHH-ccCcchhhhhH--HHHHHHhhhc-ccccchHHHHHHHHHHHhcccCChhhh-----hH----
Confidence 99999999999888888 3233 334 7888999887 589999999999999999888776421 00
Q ss_pred cHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCc-chhHHHHH
Q 008746 222 SKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM-TDVHQQVY 300 (555)
Q Consensus 222 ~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~-~~~~~~~l 300 (555)
...+..+...+...++-......+++..+.+.. .....+++.+..++.+.++.+.+-+++++..+.... +.+.
T Consensus 230 -~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~-~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~---- 303 (526)
T PF01602_consen 230 -NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP-ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF---- 303 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG----
T ss_pred -HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh----
Confidence 113444555555667778888888888877643 356778889999999888889999999888876654 2221
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCC-cccccccceeeeccCCcHHHHHHHHHHHHHccC--CCCHHHHHHH
Q 008746 301 ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP-FIFASDYKHFYCQYNEPSYVKKLKLEMLTAVAN--ESNTYEIVTE 377 (555)
Q Consensus 301 ~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p-~~~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~--~~N~~~Iv~e 377 (555)
.....+..+..+.++.+|..+++.+..++.... ..+...+.. ++....|..+|+..+.-+..++. +.+.+..++-
T Consensus 304 -~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~-~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~ 381 (526)
T PF01602_consen 304 -NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLK-YLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDT 381 (526)
T ss_dssp -THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHH
T ss_pred -hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHH-HHHhccchhhhhhHHHHHHHHHhccCchHHHHHHH
Confidence 111112333447888899999999888875431 111122221 12234456688888888888763 4567788888
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHhcccCcH-HHHHHHHHHHhhccc-chhHHHHHHHHHHHHHhCCCCcchHHHHHhhhc
Q 008746 378 LCEYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEK-DYVTAEALVLVKDLLRKYPQWSHDCIAVVGSIS 455 (555)
Q Consensus 378 L~~y~~~~d~~~~~~~i~~i~~la~~~~~~-~~~i~~ll~ll~~~~-~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~ 455 (555)
+.+.+...+..+..+++..+..+..++|+. .+.+..+.+.+.... +.+...++..+-+-....++.. .+..++..+.
T Consensus 382 l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~ 460 (526)
T PF01602_consen 382 LLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLI 460 (526)
T ss_dssp HHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHH
T ss_pred HHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHH
Confidence 888888877778888888898888888874 567888888887632 3333333343333333333311 1333333333
Q ss_pred cc-CCCchHHHHHHHHHHhccccCCC--C-hHHHHHHHHHhhh-cCCcHHHHHHHHHH
Q 008746 456 SQ-NVQEPKAKAALIWMLGEYSQDMQ--D-APYILESLTENWE-EEPSAEVRLHLLTA 508 (555)
Q Consensus 456 ~~-~~~~~~~~~~~~wiiGEy~~~~~--~-~~~~l~~l~~~~~-~e~~~~vr~~~L~a 508 (555)
.. ...++.++..++-.+.......+ + .+.++..+.+... +..+++||..+..-
T Consensus 461 ~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y 518 (526)
T PF01602_consen 461 ENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREY 518 (526)
T ss_dssp HHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHH
T ss_pred HhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 11 22456677777666666555554 2 3466666554444 13238888776543
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.39 E-value=1e-10 Score=134.99 Aligned_cols=271 Identities=18% Similarity=0.156 Sum_probs=156.5
Q ss_pred HHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHH
Q 008746 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKH 181 (555)
Q Consensus 102 in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~ 181 (555)
++.|..-|.|+++.+|..|+..|+.++.++.. +.+.+++.|+++.||..|+.++.++-...+. .+.+..
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~----~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~L~~ 691 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGFG----PALVAALGDGAAAVRRAAAEGLRELVEVLPP-------APALRD 691 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchhHH----HHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHHHHH
Confidence 35666677777777777777777777766543 3444666777777777777777666321111 234445
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHH
Q 008746 182 LMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD 261 (555)
Q Consensus 182 lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~ 261 (555)
. ++++|+.|+.+|+.+|..+...+ ...++..+.+.+++++...++.|......
T Consensus 692 ~-L~~~d~~VR~~A~~aL~~~~~~~-------------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~------- 744 (897)
T PRK13800 692 H-LGSPDPVVRAAALDVLRALRAGD-------------------AALFAAALGDPDHRVRIEAVRALVSVDDV------- 744 (897)
T ss_pred H-hcCCCHHHHHHHHHHHHhhccCC-------------------HHHHHHHhcCCCHHHHHHHHHHHhcccCc-------
Confidence 5 46677777777777776653211 11233455677777777777777765321
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccccccc
Q 008746 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (555)
Q Consensus 262 i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~ 341 (555)
+.+...+.+.++.|..++++.+..+...... ....|..++.+.++.+|..|+..|..+-. +......+
T Consensus 745 --~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~--------~~~~L~~ll~D~d~~VR~aA~~aLg~~g~--~~~~~~~l 812 (897)
T PRK13800 745 --ESVAGAATDENREVRIAVAKGLATLGAGGAP--------AGDAVRALTGDPDPLVRAAALAALAELGC--PPDDVAAA 812 (897)
T ss_pred --HHHHHHhcCCCHHHHHHHHHHHHHhccccch--------hHHHHHHHhcCCCHHHHHHHHHHHHhcCC--cchhHHHH
Confidence 1345566777777777777777766543211 01234455666777777777777665421 11110111
Q ss_pred ceeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhhcc
Q 008746 342 KHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEME 421 (555)
Q Consensus 342 ~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~~~~i~~ll~ll~~~ 421 (555)
. ..+.|+++.+|..|++.|..+.++.-+ .-|...+.+.+..+|..++.+++.+. ......+.+...++..
T Consensus 813 ~--~aL~d~d~~VR~~Aa~aL~~l~~~~a~----~~L~~~L~D~~~~VR~~A~~aL~~~~----~~~~a~~~L~~al~D~ 882 (897)
T PRK13800 813 T--AALRASAWQVRQGAARALAGAAADVAV----PALVEALTDPHLDVRKAAVLALTRWP----GDPAARDALTTALTDS 882 (897)
T ss_pred H--HHhcCCChHHHHHHHHHHHhccccchH----HHHHHHhcCCCHHHHHHHHHHHhccC----CCHHHHHHHHHHHhCC
Confidence 1 123556677777777777776544322 33444556777777777777776651 1112344555555555
Q ss_pred cchhHHHHHHH
Q 008746 422 KDYVTAEALVL 432 (555)
Q Consensus 422 ~~~v~~e~i~~ 432 (555)
...|..+++..
T Consensus 883 d~~Vr~~A~~a 893 (897)
T PRK13800 883 DADVRAYARRA 893 (897)
T ss_pred CHHHHHHHHHH
Confidence 44555554443
No 14
>PRK09687 putative lyase; Provisional
Probab=99.36 E-value=1e-10 Score=116.45 Aligned_cols=193 Identities=15% Similarity=0.044 Sum_probs=109.8
Q ss_pred HHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHH
Q 008746 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKH 181 (555)
Q Consensus 102 in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~ 181 (555)
++.|.+-|.|+|..+|..|+.+|+.++.++..+. +.+++.|+++.||+.|+.+++.+-..... .....+.|..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~----l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~L~~ 97 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRL----AIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNILNN 97 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHH----HHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHHHHH
Confidence 4566777788888888888888888887765544 34667788888888888888876421110 1235566666
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHH
Q 008746 182 LMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD 261 (555)
Q Consensus 182 lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~ 261 (555)
++++|+|+.|+.+|+.+|..++...+.. ....+..+...+.+.++..+......|..+. ++ .
T Consensus 98 l~~~D~d~~VR~~A~~aLG~~~~~~~~~------------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--~~----~ 159 (280)
T PRK09687 98 LALEDKSACVRASAINATGHRCKKNPLY------------SPKIVEQSQITAFDKSTNVRFAVAFALSVIN--DE----A 159 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhccccccccc------------chHHHHHHHHHhhCCCHHHHHHHHHHHhccC--CH----H
Confidence 6567888888888888887765432210 0012223333344455555555555555543 11 2
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 008746 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH 327 (555)
Q Consensus 262 i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~ 327 (555)
.++.|...+.+.++.|...|+..+..+....+ .+.+.|...+.+.++.+|-.|...|.
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 44455555555555566666655555422111 11233444445555555555555544
No 15
>PRK09687 putative lyase; Provisional
Probab=99.35 E-value=1.4e-10 Score=115.37 Aligned_cols=218 Identities=16% Similarity=0.086 Sum_probs=117.0
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhH-cCCCChHHHHHHHHHhcCCChhhh--HHHHHHHHh
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRD-CKDEDPMIRGLALRSLCSLRVANL--VEYLVGPLG 141 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kD-L~~~n~~vr~lAL~~L~~i~~~ei--~~~l~~~i~ 141 (555)
|..+.+++.++|..+|+.+--.+..+...... .--+.+.|..- ++|+++.||..|+.+||.++.++. .+.....+.
T Consensus 56 ~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~ 134 (280)
T PRK09687 56 FRLAIELCSSKNPIERDIGADILSQLGMAKRC-QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQ 134 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHH
Confidence 55556666666666666666666665432210 01122333332 456666777777777766654332 123344455
Q ss_pred hccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhc
Q 008746 142 LGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALI 221 (555)
Q Consensus 142 ~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll 221 (555)
..+.|+++.||+.|+.+++++- .+..++.|..+ ++|+|+.|+..|+.+|..+...+|
T Consensus 135 ~~~~D~~~~VR~~a~~aLg~~~--------~~~ai~~L~~~-L~d~~~~VR~~A~~aLg~~~~~~~-------------- 191 (280)
T PRK09687 135 ITAFDKSTNVRFAVAFALSVIN--------DEAAIPLLINL-LKDPNGDVRNWAAFALNSNKYDNP-------------- 191 (280)
T ss_pred HHhhCCCHHHHHHHHHHHhccC--------CHHHHHHHHHH-hcCCCHHHHHHHHHHHhcCCCCCH--------------
Confidence 5566666677777666665442 13345666665 466666677776666666521111
Q ss_pred cHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHH
Q 008746 222 SKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE 301 (555)
Q Consensus 222 ~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~ 301 (555)
..+..|+..+.+.+++.+...+..|+++. ++ ..++.|...|++.+ +.++++..+..++..
T Consensus 192 --~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--~~----~av~~Li~~L~~~~--~~~~a~~ALg~ig~~---------- 251 (280)
T PRK09687 192 --DIREAFVAMLQDKNEEIRIEAIIGLALRK--DK----RVLSVLIKELKKGT--VGDLIIEAAGELGDK---------- 251 (280)
T ss_pred --HHHHHHHHHhcCCChHHHHHHHHHHHccC--Ch----hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH----------
Confidence 13344555556666666666666666654 22 24555555555544 455666666665532
Q ss_pred HHHHHHHHHhc-CCCchhHHHHHHHH
Q 008746 302 RIKAPLLTLVS-SGSPEQSYAVLSHL 326 (555)
Q Consensus 302 ~i~~~L~~ll~-~~~~~~ry~aL~~l 326 (555)
+..+.|..++. +.|+.++..|.+.+
T Consensus 252 ~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 11233444443 45555555555544
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.28 E-value=7.7e-10 Score=127.68 Aligned_cols=239 Identities=16% Similarity=0.131 Sum_probs=160.1
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHH
Q 008746 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRER 217 (555)
Q Consensus 138 ~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~ 217 (555)
+.+.+.|.|++|.||+.|+.++.++.. +..++.|..+ ++|+|+.|+..|+.+|.++....+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 456678899999999999999998742 4566888887 5999999999999999888542111
Q ss_pred hhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHH
Q 008746 218 EALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQ 297 (555)
Q Consensus 218 ~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~ 297 (555)
...|...+.+.+|+.+..+++.|......++ ..+...|.+.++.|..+|++.+..+...
T Consensus 686 --------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~D~d~~VR~~Av~aL~~~~~~------ 744 (897)
T PRK13800 686 --------APALRDHLGSPDPVVRAAALDVLRALRAGDA-------ALFAAALGDPDHRVRIEAVRALVSVDDV------ 744 (897)
T ss_pred --------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------HHHHHHhcCCCHHHHHHHHHHHhcccCc------
Confidence 1223445667899999999999988764443 2445678899999999999998876431
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHH
Q 008746 298 QVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTE 377 (555)
Q Consensus 298 ~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~e 377 (555)
..|..++.+.++.+|..+.+.|..+-...+..+.. +. ....|+++.+|..++..|..+.++..+ ...
T Consensus 745 -------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~-L~--~ll~D~d~~VR~aA~~aLg~~g~~~~~---~~~ 811 (897)
T PRK13800 745 -------ESVAGAATDENREVRIAVAKGLATLGAGGAPAGDA-VR--ALTGDPDPLVRAAALAALAELGCPPDD---VAA 811 (897)
T ss_pred -------HHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHH-HH--HHhcCCCHHHHHHHHHHHHhcCCcchh---HHH
Confidence 12344577888888988888887664433321111 11 123566678888888888887665332 233
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhhcccchhHHHHHHHH
Q 008746 378 LCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLV 433 (555)
Q Consensus 378 L~~y~~~~d~~~~~~~i~~i~~la~~~~~~~~~i~~ll~ll~~~~~~v~~e~i~~i 433 (555)
+...+.+.|..+|..++.+++.+... ..+..+..++......|..+++..+
T Consensus 812 l~~aL~d~d~~VR~~Aa~aL~~l~~~-----~a~~~L~~~L~D~~~~VR~~A~~aL 862 (897)
T PRK13800 812 ATAALRASAWQVRQGAARALAGAAAD-----VAVPALVEALTDPHLDVRKAAVLAL 862 (897)
T ss_pred HHHHhcCCChHHHHHHHHHHHhcccc-----chHHHHHHHhcCCCHHHHHHHHHHH
Confidence 45566777777888888888765421 1235555555554444554444443
No 17
>PTZ00429 beta-adaptin; Provisional
Probab=99.27 E-value=4.7e-08 Score=108.78 Aligned_cols=408 Identities=14% Similarity=0.126 Sum_probs=248.5
Q ss_pred HHhHcCCCChHHHHHHHHHhcCCC--hhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHH
Q 008746 105 LQRDCKDEDPMIRGLALRSLCSLR--VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL 182 (555)
Q Consensus 105 l~kDL~~~n~~vr~lAL~~L~~i~--~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~l 182 (555)
+.|-+.++|..+|-+.--.+.++. .||.+-..+..+.+=+.|+||+||--|+.++.++- .|+.+ +.+...+++.
T Consensus 73 Vvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir--~~~i~--e~l~~~lkk~ 148 (746)
T PTZ00429 73 VVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR--VSSVL--EYTLEPLRRA 148 (746)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--cHHHH--HHHHHHHHHH
Confidence 334667889999988866665553 47877778899999999999999999999988774 45554 5567778888
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHH---
Q 008746 183 MLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI--- 259 (555)
Q Consensus 183 ll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~--- 259 (555)
+.|++|-|+.+|+.++..+...+|+. +.. ...+..|.+.+.+.+|-.+...+.+|..+...++...
T Consensus 149 -L~D~~pYVRKtAalai~Kly~~~pel----v~~------~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~ 217 (746)
T PTZ00429 149 -VADPDPYVRKTAAMGLGKLFHDDMQL----FYQ------QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESS 217 (746)
T ss_pred -hcCCCHHHHHHHHHHHHHHHhhCccc----ccc------cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHH
Confidence 69999999999999999998877642 111 1133455556789999999999999988875554322
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhC-Ccccc
Q 008746 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA-PFIFA 338 (555)
Q Consensus 260 ~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~-p~~~~ 338 (555)
...+..+...+...++.-....++++..+.+....-.. .+...+...++++++-+-+.|.+.+..+.... |+...
T Consensus 218 ~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~----~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~ 293 (746)
T PTZ00429 218 NEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAE----TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIE 293 (746)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHH
Confidence 33444455555566777666777777766554332212 23334445566777777777777776654321 22211
Q ss_pred cc---c-ceeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHH-hhcCCHH-HHHHHHHHHHHHhcccCcHHHHHH
Q 008746 339 SD---Y-KHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEY-AANVDIP-IARESIRAVGKIALQQYDVNAIVD 412 (555)
Q Consensus 339 ~~---~-~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y-~~~~d~~-~~~~~i~~i~~la~~~~~~~~~i~ 412 (555)
.- + ..+..+.+.++.+|-.+|.-+..++... -..+.+++..| ....|+. ++...+..+..++.. .+...+++
T Consensus 294 ~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~-P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane-~Nv~~IL~ 371 (746)
T PTZ00429 294 RCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIF-PNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTP-SVAPEILK 371 (746)
T ss_pred HHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHC-HHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCc-ccHHHHHH
Confidence 11 1 1111113344557777776665554432 12233333332 4444554 556667777666632 22344666
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCC-chHHHHHHHHHHhccccCCCChHHHHHHHHH
Q 008746 413 RLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQ-EPKAKAALIWMLGEYSQDMQDAPYILESLTE 491 (555)
Q Consensus 413 ~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~wiiGEy~~~~~~~~~~l~~l~~ 491 (555)
-+.+.....+..++.+++..+..+..++|...+.|+..+.+++..... -.++..++--++-.|.+. .++..+..
T Consensus 372 EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~-----~il~~L~~ 446 (746)
T PTZ00429 372 ELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPEL-----LMLDTLVT 446 (746)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccH-----HHHHHHHH
Confidence 666666666667888888899989999998877787777777622111 112223333334444332 24555555
Q ss_pred hh--hcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhccCCCcchh
Q 008746 492 NW--EEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQVVF 540 (555)
Q Consensus 492 ~~--~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~~~~~d~d~evq 540 (555)
.+ ..-.+++.|..++=.++.+.-..+ ...+.+...++.. .+.+.+||
T Consensus 447 ~~~~~~i~e~~AKaaiiWILGEy~~~I~-~a~~~L~~~i~~f-~~E~~~Vq 495 (746)
T PTZ00429 447 DYGADEVVEEEAKVSLLWMLGEYCDFIE-NGKDIIQRFIDTI-MEHEQRVQ 495 (746)
T ss_pred hhcccccccHHHHHHHHHHHHhhHhhHh-hHHHHHHHHHhhh-ccCCHHHH
Confidence 44 222337888886655655433222 3455555544333 23456676
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.08 E-value=1.8e-07 Score=111.90 Aligned_cols=418 Identities=16% Similarity=0.110 Sum_probs=280.2
Q ss_pred hhhcCCCCchhHHHHHHHHHHhcCCCChHHH-----HHHHHHHhHcCCCChHHHHHHHHHhcCCC--hhhhH-----HHH
Q 008746 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLAL-----LTINFLQRDCKDEDPMIRGLALRSLCSLR--VANLV-----EYL 136 (555)
Q Consensus 69 i~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~ei~-----~~l 136 (555)
+.++.+.+.+.+.=+-..+..+...+++..- ..++.|.+-|.++++.++..|+++++++. +.+-. ...
T Consensus 410 V~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGa 489 (2102)
T PLN03200 410 VGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGG 489 (2102)
T ss_pred hhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 4566666677777777777666665555322 24789999999999999999999998874 33322 246
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHHhhhCCC---cccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHh
Q 008746 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (555)
Q Consensus 137 ~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~---~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~ 213 (555)
+|.+.++|.++++.+|+.|+.++..+....++ .+.+.+.++.|..+ +++.++.++..|+.+|..+.....
T Consensus 490 IP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~L-L~sgd~~~q~~Aa~AL~nLi~~~d------ 562 (2102)
T PLN03200 490 IPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL-LKNGGPKGQEIAAKTLTKLVRTAD------ 562 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHH-HhCCCHHHHHHHHHHHHHHHhccc------
Confidence 88999999999999999999999998763332 23345788888888 588899999999999999865321
Q ss_pred hhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCC-ChhH-------HHHHHHHHHHHhccCchHHHHHHHHHH
Q 008746 214 SREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-DSNE-------IFDIMNLLEDRLQHANGAVVLSTIKVF 285 (555)
Q Consensus 214 ~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~-~~~~-------~~~i~~~l~~~L~s~~~aV~~eai~~i 285 (555)
...+..++..+...++-.+..+++.+...... +.++ ...-++.+..++++.+..+.-+|+.++
T Consensus 563 ---------~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iL 633 (2102)
T PLN03200 563 ---------AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVL 633 (2102)
T ss_pred ---------hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11345566666677777888888888765321 1111 123678889999999999999999999
Q ss_pred HHhcCCcchhHHHH-HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCc-----cccccc-cee-eeccCCcHHHHHH
Q 008746 286 LHLTLSMTDVHQQV-YERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-----IFASDY-KHF-YCQYNEPSYVKKL 357 (555)
Q Consensus 286 ~~l~~~~~~~~~~~-l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~-----~~~~~~-~~f-~~~~~dd~~Ir~~ 357 (555)
..+....++....+ .....++++.++.+++.+++.-+-..|..+...... +..... ..+ -...+.+..++..
T Consensus 634 snL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~ 713 (2102)
T PLN03200 634 ADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQ 713 (2102)
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHH
Confidence 88876555543332 235677889999998899998888888877743221 111111 111 1235667789999
Q ss_pred HHHHHHHccCCC-CHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcHH---------HHHHHHHHHhhccc
Q 008746 358 KLEMLTAVANES-NTYE-----IVTELCEYAANVDIPIARESIRAVGKIALQQYDVN---------AIVDRLLQFLEMEK 422 (555)
Q Consensus 358 aL~iL~~l~~~~-N~~~-----Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~~---------~~i~~ll~ll~~~~ 422 (555)
+++.|..++... +... ++.-|.+++++.+++-|+.+..++..++..+|-.. -++.-++++|+..+
T Consensus 714 Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~ 793 (2102)
T PLN03200 714 AVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTD 793 (2102)
T ss_pred HHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCC
Confidence 999999987554 3332 46778899999999999999999999999887311 14667788887654
Q ss_pred c--hhHHHHHHHHHHHHHh-------CCCCc---c--hHHHHHhhhcccCCCchHHHHHHHHHHhccccCCC--------
Q 008746 423 D--YVTAEALVLVKDLLRK-------YPQWS---H--DCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ-------- 480 (555)
Q Consensus 423 ~--~v~~e~i~~i~~ii~~-------~~~~~---~--~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~-------- 480 (555)
. ....|+++++-.+.+. +|-+. + ..+.-+.+.+ ....|.+...++-++...|..-+
T Consensus 794 ~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l--~~~~p~~~~kai~il~~~~~~~~~~~~~~~~ 871 (2102)
T PLN03200 794 LDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL--AEGHPLVQDKAIEILSRLCRDQPVVLGDLIA 871 (2102)
T ss_pred cchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH--HcCChHHHHHHHHHHHHHhccChhHHHHHHh
Confidence 2 2333677777777663 11110 0 0011121111 22455555556666655443322
Q ss_pred ChHHHHHHHHHhhhcCCcHHHHHH
Q 008746 481 DAPYILESLTENWEEEPSAEVRLH 504 (555)
Q Consensus 481 ~~~~~l~~l~~~~~~e~~~~vr~~ 504 (555)
..+..+..+.++..+.++.+||.-
T Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~ 895 (2102)
T PLN03200 872 NASKCISSLADRIINSSSLEVKIG 895 (2102)
T ss_pred cccchHHHHHHHHhhcCCceEEec
Confidence 345566677777777776777643
No 19
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.04 E-value=2.3e-06 Score=102.76 Aligned_cols=461 Identities=15% Similarity=0.132 Sum_probs=281.5
Q ss_pred hHHHHHHHHHHHHHHhcCC-Cc------chhHHHhhhhcCC-CCchhHHHHHHHHHHhcCCCChHHHHH-----HHHHHh
Q 008746 41 DDSKRELFKKVISYMTIGI-DV------SAVFGEMVMCSAT-SDIVLKKMCYLYVGNYAKVNPDLALLT-----INFLQR 107 (555)
Q Consensus 41 ~~~k~~~l~kli~~~~~G~-d~------s~lf~~vi~~~~s-~~~~~Krl~yl~l~~~~~~~~e~~~l~-----in~l~k 107 (555)
...+.++. .+++..+.+. +. ....+..++++.+ ++..+|.=+--++..+...+++..-.+ +..|.+
T Consensus 203 ~~lQ~eAa-~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~ 281 (2102)
T PLN03200 203 SDAQANAA-SLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALIN 281 (2102)
T ss_pred HHHHHHHH-HHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH
Confidence 34555554 4444445442 11 1236666888865 455777766667766666656542222 344444
Q ss_pred HcCCCC---------hHHHHHHHHHhcCCCh--hhhHHH-----------------------------------------
Q 008746 108 DCKDED---------PMIRGLALRSLCSLRV--ANLVEY----------------------------------------- 135 (555)
Q Consensus 108 DL~~~n---------~~vr~lAL~~L~~i~~--~ei~~~----------------------------------------- 135 (555)
-+.+++ ...+..|..+|+|+.. +.+++.
T Consensus 282 lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~ 361 (2102)
T PLN03200 282 ATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPT 361 (2102)
T ss_pred HHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhcccc
Confidence 444333 4457788888888633 111111
Q ss_pred -HHHHHhhccCCCChHH-HHHHHHHHHHHhhhCCC---cccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccc
Q 008746 136 -LVGPLGLGLKDNNSYV-RTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTS 210 (555)
Q Consensus 136 -l~~~i~~~l~d~~~~V-Rk~A~lal~kl~~~~p~---~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~ 210 (555)
+.+.+.+++.|++|.+ ...++-|+..++. +|. .+.+.+.++.|..+ +.-.+..++..++..|..++..+.+.
T Consensus 362 ~v~~~LV~Llr~k~p~~vqe~V~eALasl~g-N~~l~~~L~~~daik~LV~L-L~~~~~evQ~~Av~aL~~L~~~~~e~- 438 (2102)
T PLN03200 362 VIEQILVKLLKPRDTKLVQERIIEALASLYG-NAYLSRKLNHAEAKKVLVGL-ITMATADVQEELIRALSSLCCGKGGL- 438 (2102)
T ss_pred ccHHHHHHHhCCCCCchhHHHHHHHHHHhcC-ChHHHHHHHhccchhhhhhh-hccCCHHHHHHHHHHHHHHhCCCHHH-
Confidence 1233445555554442 4444444433221 111 11123455666666 46667889999999998888654421
Q ss_pred hHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHH-----HHHHHHHHHhccCchHHHHHHHHHH
Q 008746 211 EEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVF 285 (555)
Q Consensus 211 ~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~-----~i~~~l~~~L~s~~~aV~~eai~~i 285 (555)
+..+.....++.|++.|...++-.|...+..++.+...+++... ..++.+..+|++.+..+.-+|+-++
T Consensus 439 ------~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL 512 (2102)
T PLN03200 439 ------WEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVL 512 (2102)
T ss_pred ------HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11122223567778888888888999999999888765544332 3577888999999999999999999
Q ss_pred HHhcCCcchhHHHHHH--HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCcHHHHHHHHHHHH
Q 008746 286 LHLTLSMTDVHQQVYE--RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLT 363 (555)
Q Consensus 286 ~~l~~~~~~~~~~~l~--~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~~~~~dd~~Ir~~aL~iL~ 363 (555)
..+....+... .++. .+.++|+.+|.+.+++.+..|+..|..++.....-..+++-. .+..++..++..+++.|.
T Consensus 513 ~NLa~~~~qir-~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~--LLlsdd~~~~~~aL~vLg 589 (2102)
T PLN03200 513 WNLCCHSEDIR-ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTA--LLLGDLPESKVHVLDVLG 589 (2102)
T ss_pred HHHhCCcHHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHH--HhcCCChhHHHHHHHHHH
Confidence 98876544332 2232 355678888998999999999999998876442211122222 235566678888898886
Q ss_pred HccCCCCH----------HHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCc-HH-----HHHHHHHHHhhcccchhHH
Q 008746 364 AVANESNT----------YEIVTELCEYAANVDIPIARESIRAVGKIALQQYD-VN-----AIVDRLLQFLEMEKDYVTA 427 (555)
Q Consensus 364 ~l~~~~N~----------~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~-~~-----~~i~~ll~ll~~~~~~v~~ 427 (555)
.+.+-... ..-++.|.+.+.+.+++.++++...|..++...++ .. ..+..++.++..++..+..
T Consensus 590 nIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~k 669 (2102)
T PLN03200 590 HVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVAT 669 (2102)
T ss_pred HHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHH
Confidence 66432111 12456777788888899999999999888764443 11 2578889999988888888
Q ss_pred HHHHHHHHHHHhCCCCc-c-----hHHHHHhhhcccCCCchHHHHHHHHHHhccccCCCChH-----HHHHHHHHhhhcC
Q 008746 428 EALVLVKDLLRKYPQWS-H-----DCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAP-----YILESLTENWEEE 496 (555)
Q Consensus 428 e~i~~i~~ii~~~~~~~-~-----~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~~~-----~~l~~l~~~~~~e 496 (555)
++...+-++.+...+.+ . .++..+.+++ ...+.+++..++-.++-.....+... +.+..+.+ +..+
T Consensus 670 eAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL--~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~-lLr~ 746 (2102)
T PLN03200 670 QSARALAALSRSIKENRKVSYAAEDAIKPLIKLA--KSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTR-VLRE 746 (2102)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH--hCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHH-HHHh
Confidence 88888887876322211 1 1233344444 33455666555555544433332222 22333333 3345
Q ss_pred CcHHHHHHHHHHHHHHHhcCC
Q 008746 497 PSAEVRLHLLTAVMKCFFKRP 517 (555)
Q Consensus 497 ~~~~vr~~~L~a~~Kl~~~~p 517 (555)
+++++|..+..++..++..+|
T Consensus 747 G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 747 GTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred CChHHHHHHHHHHHHHHhCCC
Confidence 559999999999999988877
No 20
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=5.8e-07 Score=100.44 Aligned_cols=425 Identities=15% Similarity=0.150 Sum_probs=268.9
Q ss_pred HHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccC-CCChHHHHHHHHHHHHHhhh-CCCccc--CCCchHHH
Q 008746 104 FLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHI-SAPTCI--DADFPPTL 179 (555)
Q Consensus 104 ~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~-d~~~~VRk~A~lal~kl~~~-~p~~~~--~~~~~~~l 179 (555)
.|...|.+++..+|..|=+++.++-..+= +.+.+...+. ..+|.||.-|+.-+.|+..+ ++..-. ...+...|
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~l 84 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSL 84 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 45566778888889999888887633221 4445555554 46899999888888877643 333210 12233333
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCC----C
Q 008746 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL----D 255 (555)
Q Consensus 180 ~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~----~ 255 (555)
...+..++-+.|+.....++.+|.+....- .+| ..+..|++..++.+|-.|-..+.+|..+... .
T Consensus 85 L~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WP--------ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 85 LEIIQSETEPSVRHKLADVIAEIARNDLPE---KWP--------ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhcccc---chH--------HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence 344468999999999999999998764421 122 2556677778889999998888888776422 1
Q ss_pred hhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcc---h-hH--HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 008746 256 SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT---D-VH--QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHIL 329 (555)
Q Consensus 256 ~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~---~-~~--~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l 329 (555)
..-...+...+...+.+.+..|...|+|++..+....+ + .+ ...+.++.+.+..++...|...--.+|+.+..+
T Consensus 154 ~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El 233 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIEL 233 (1075)
T ss_pred chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHH
Confidence 11223455556666677666699999999876654332 1 11 233455555566667666666678899999999
Q ss_pred HhhCCccccccccee-------eeccCCcHHHHHHHHHHHHHccCC------C---CHHHHHHHHHHHhhcC--C-----
Q 008746 330 VMRAPFIFASDYKHF-------YCQYNEPSYVKKLKLEMLTAVANE------S---NTYEIVTELCEYAANV--D----- 386 (555)
Q Consensus 330 ~~~~p~~~~~~~~~f-------~~~~~dd~~Ir~~aL~iL~~l~~~------~---N~~~Iv~eL~~y~~~~--d----- 386 (555)
+...|.++.+|+..+ ....+-+.++|..||++|..+... . -...++..++.-+.+. |
T Consensus 234 ~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~ 313 (1075)
T KOG2171|consen 234 LESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSN 313 (1075)
T ss_pred HhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcc
Confidence 999999999988632 133455789999999999987422 1 1223444444333221 1
Q ss_pred ------HH---HHHHHHHHHHHHhcccCcH---HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCc----chHHHH
Q 008746 387 ------IP---IARESIRAVGKIALQQYDV---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWS----HDCIAV 450 (555)
Q Consensus 387 ------~~---~~~~~i~~i~~la~~~~~~---~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~----~~~~~~ 450 (555)
++ -..-+.+++-++|...+.. .-.++.+-.++.+..-+-....+.++-.+....++.- ..++.+
T Consensus 314 ~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~ 393 (1075)
T KOG2171|consen 314 EDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPI 393 (1075)
T ss_pred ccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 11 2455788888889887653 3567788888877655555555555555554433321 122333
Q ss_pred HhhhcccCCCchHHHHHHHHHHhccccCCCC------hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCc-hhHHH
Q 008746 451 VGSISSQNVQEPKAKAALIWMLGEYSQDMQD------APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-ETQKV 523 (555)
Q Consensus 451 l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~------~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~-~~~~~ 523 (555)
+.+.+ ...+|.+|.+++..+|..+..+.. ...+...++........+.|+..+-.++.-++-..++ ...+.
T Consensus 394 Vl~~l--~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY 471 (1075)
T KOG2171|consen 394 VLNGL--NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY 471 (1075)
T ss_pred HHhhc--CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 33332 456789999999999998877632 1222333443333443378999988888888777663 23333
Q ss_pred HHH----HHHHhccCCCcchhhccc
Q 008746 524 LGA----ALAAGLADFHQVVFYGFF 544 (555)
Q Consensus 524 l~~----vl~~~~~d~d~evq~Ra~ 544 (555)
+.. .|.....+..+.||+-++
T Consensus 472 Ld~lm~~~l~~L~~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 472 LDGLMEKKLLLLLQSSKPYVQEQAV 496 (1075)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHH
Confidence 333 455666777788887643
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.00 E-value=2.6e-06 Score=92.21 Aligned_cols=433 Identities=18% Similarity=0.224 Sum_probs=250.5
Q ss_pred HHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHH-hhhhcCCCCchhHHHHHHHHHHhcCC-CChH-HHH
Q 008746 24 DLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGE-MVMCSATSDIVLKKMCYLYVGNYAKV-NPDL-ALL 100 (555)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~-vi~~~~s~~~~~Krl~yl~l~~~~~~-~~e~-~~l 100 (555)
++...++++..+ +.+.+.+..+-.....-...+.+.-. +..++++.+.+.--++.-.+..++.. .++. .--
T Consensus 4 ~~~~~l~~l~~~------~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~ 77 (503)
T PF10508_consen 4 WINELLEELSSK------AERLEALPELKTELSSSPFLERLPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQ 77 (503)
T ss_pred HHHHHHHHHhcc------cchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 445555554322 34555555544433322223322222 23556666655544555555555443 3333 234
Q ss_pred HHHHHHhHcCCCChHHHHHHHHHhcCCCh-h-h---hH--HHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc--cc
Q 008746 101 TINFLQRDCKDEDPMIRGLALRSLCSLRV-A-N---LV--EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT--CI 171 (555)
Q Consensus 101 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~-e---i~--~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~--~~ 171 (555)
....+++-|.|+++.||.+|++.++++.. . . ++ ..+++.|..++.|++..|.+.|+-++.++.+..+.. +.
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~ 157 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLF 157 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHh
Confidence 45788899999999999999999998622 1 1 11 457888999999999999999999999998755443 23
Q ss_pred CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHcc
Q 008746 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (555)
Q Consensus 172 ~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~ 251 (555)
.++....|..++ ..+|..++..++.++.+++..++... +.| .....+..+++.+.+-|.-+|..++++|..+
T Consensus 158 ~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~------~~sgll~~ll~eL~~dDiLvqlnalell~~L 229 (503)
T PF10508_consen 158 DSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEAA-EAV------VNSGLLDLLLKELDSDDILVQLNALELLSEL 229 (503)
T ss_pred CcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHHH-HHH------HhccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 455578888874 56688899999999999988766421 111 1122677788888888889999999999998
Q ss_pred CCCChhHH-----HHHHHHHHHHhccC--ch---HH-HHHHHHHHHHhcCCcc-hhHHHHHHHHHHHHHHHhcCCCchhH
Q 008746 252 VPLDSNEI-----FDIMNLLEDRLQHA--NG---AV-VLSTIKVFLHLTLSMT-DVHQQVYERIKAPLLTLVSSGSPEQS 319 (555)
Q Consensus 252 ~~~~~~~~-----~~i~~~l~~~L~s~--~~---aV-~~eai~~i~~l~~~~~-~~~~~~l~~i~~~L~~ll~~~~~~~r 319 (555)
...+ ... ..+++.+...+.+. +| ++ +...++.+..+....+ .+. ..+..+.+.+..++.+.|+..+
T Consensus 230 a~~~-~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~-~~~p~~~~~l~~~~~s~d~~~~ 307 (503)
T PF10508_consen 230 AETP-HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVL-ELYPAFLERLFSMLESQDPTIR 307 (503)
T ss_pred HcCh-hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHH-HHHHHHHHHHHHHhCCCChhHH
Confidence 7532 222 23455566665432 22 22 3344455555544222 121 1223344445566677888888
Q ss_pred HHHHHHHHHHHhhCCcccccccceeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008746 320 YAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGK 399 (555)
Q Consensus 320 y~aL~~l~~l~~~~p~~~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~ 399 (555)
-+|++++..+.... ...++| .......++.+++.+-.+..+...+++..++.+++.
T Consensus 308 ~~A~dtlg~igst~-----------------------~G~~~L-~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~ 363 (503)
T PF10508_consen 308 EVAFDTLGQIGSTV-----------------------EGKQLL-LQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALAS 363 (503)
T ss_pred HHHHHHHHHHhCCH-----------------------HHHHHH-HhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 88888888765221 111222 223355677777777778777778888888888877
Q ss_pred HhcccCc--HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh-CCCCcchHHHHHhhhcccCCCchHHHHHHHHHHhccc
Q 008746 400 IALQQYD--VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRK-YPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYS 476 (555)
Q Consensus 400 la~~~~~--~~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~ 476 (555)
+-...++ ...+....-.....-++..... .+..++++ .||.+-.+..++..+. .--|.+-+..
T Consensus 364 il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~l~~l~-----------~~~Wg~~~i~ 429 (503)
T PF10508_consen 364 ILTSGTDRQDNDILSITESWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRLLQALA-----------AQPWGQREIC 429 (503)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHHHHHHh-----------cCHHHHHHHH
Confidence 7433221 2222221222222211111111 34444444 3555433333333332 1124443322
Q ss_pred cCCCChHHHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHh
Q 008746 477 QDMQDAPYILESLTENWEEEP--SAEVRLHLLTAVMKCFF 514 (555)
Q Consensus 477 ~~~~~~~~~l~~l~~~~~~e~--~~~vr~~~L~a~~Kl~~ 514 (555)
..+.+++.+.++-.+.+ -.+-|..++.++.|...
T Consensus 430 ----~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 430 ----SSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred ----hCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 24667788887765443 04455667777776543
No 22
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=7.9e-07 Score=92.15 Aligned_cols=329 Identities=17% Similarity=0.155 Sum_probs=218.0
Q ss_pred HHHHHHHHhHcC-CCCh-----HHHHHHHHHhcCC-ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCccc
Q 008746 99 LLTINFLQRDCK-DEDP-----MIRGLALRSLCSL-RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI 171 (555)
Q Consensus 99 ~l~in~l~kDL~-~~n~-----~vr~lAL~~L~~i-~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~ 171 (555)
-=+|..+-+|+. +++. -..++|..++|-- .+....+.++++|..+++|++.-||-.|+.+++.+.+.....+.
T Consensus 41 ~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~ 120 (675)
T KOG0212|consen 41 RKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVL 120 (675)
T ss_pred HHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcc
Confidence 344444555553 2222 2334555444321 22236788899999999999999999999999999887766552
Q ss_pred --CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHH-hhcCCCChhHHHHHHHHH
Q 008746 172 --DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLL-NRIKEFSEWAQCLVLELV 248 (555)
Q Consensus 172 --~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~-~~l~~~~pw~q~~iL~~L 248 (555)
.+++.+.+.++ ..|+|..|+.+| .++-.+.+.-.+.. ..-++-+.+..|+ +.+...+|..+..++.-+
T Consensus 121 ~~Fn~iFdvL~kl-saDsd~~V~~~a-eLLdRLikdIVte~-------~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl 191 (675)
T KOG0212|consen 121 VYFNEIFDVLCKL-SADSDQNVRGGA-ELLDRLIKDIVTES-------ASTFSLPEFIPLLRERIYVINPMTRQFLVSWL 191 (675)
T ss_pred cchHHHHHHHHHH-hcCCccccccHH-HHHHHHHHHhcccc-------ccccCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 24566777776 689999998877 34555544322210 0012222333333 356777999999999988
Q ss_pred HccCCCChhHHHH----HHHHHHHHhccCchHHHHHHHHHHH----HhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHH
Q 008746 249 AKYVPLDSNEIFD----IMNLLEDRLQHANGAVVLSTIKVFL----HLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSY 320 (555)
Q Consensus 249 ~~~~~~~~~~~~~----i~~~l~~~L~s~~~aV~~eai~~i~----~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry 320 (555)
..+....+-+... +.+-+-..|...+..|.--+=.++. ++..+.+.+ -.++..+.++.-+.++++.++-
T Consensus 192 ~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~ 268 (675)
T KOG0212|consen 192 YVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQL 268 (675)
T ss_pred HHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---CcccchhhccccccCCcHHHHH
Confidence 8875444444333 4444556777888887644433332 232221111 1234456666667889999999
Q ss_pred HHHHHHHHHHhhCCcccccccce-----eeeccCCcH-HHHHHHHH---HHHHccCCCC------HHHHHHHHHHHhhcC
Q 008746 321 AVLSHLHILVMRAPFIFASDYKH-----FYCQYNEPS-YVKKLKLE---MLTAVANESN------TYEIVTELCEYAANV 385 (555)
Q Consensus 321 ~aL~~l~~l~~~~p~~~~~~~~~-----f~~~~~dd~-~Ir~~aL~---iL~~l~~~~N------~~~Iv~eL~~y~~~~ 385 (555)
.||..+..+++..|..+-+++.. +-|..+.++ ++|..|-. .|.+++.+.- ...|++-|..|+.+.
T Consensus 269 ~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~ 348 (675)
T KOG0212|consen 269 KALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD 348 (675)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc
Confidence 99999999999988866666542 337777776 46555543 4566665543 338999999999988
Q ss_pred CHHHHHHHHHHHHHHhcccCcH-----HHHHHHHHHHhhcccchhHHHHHHHHHHHHHh
Q 008746 386 DIPIARESIRAVGKIALQQYDV-----NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRK 439 (555)
Q Consensus 386 d~~~~~~~i~~i~~la~~~~~~-----~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~ 439 (555)
..+-|..+.+-|.-+-.++|+. ..++.++++-+++..+.++...+..+..|...
T Consensus 349 ~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 349 REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 8899999999999888899872 35788999989888888888887777777654
No 23
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=5.1e-06 Score=88.47 Aligned_cols=349 Identities=14% Similarity=0.090 Sum_probs=233.5
Q ss_pred HHHHHHhcCCCcchhHHHhhh-hcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC-
Q 008746 50 KVISYMTIGIDVSAVFGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL- 127 (555)
Q Consensus 50 kli~~~~~G~d~s~lf~~vi~-~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i- 127 (555)
-...-.--+.|+.-+....++ -+.|+|.-.--++.-.++.+. .||++.=..+-+..-|+++-||+|--|+-.|-++
T Consensus 95 aa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fv--TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvF 172 (877)
T KOG1059|consen 95 AASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIV--TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVF 172 (877)
T ss_pred HHHHhhcCCccHHHHHHHHHHHHhccCccchhhheeccccccc--CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 334444445666555555543 344555555566666667664 5888888888999999999999999999999886
Q ss_pred -ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 008746 128 -RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (555)
Q Consensus 128 -~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~ 206 (555)
..||-.....|-++.-|.|++|-|..+|+-.++-+.+++|.-+ -.+.|.+.++|-..+|-.|..-.+.++..+.+-+
T Consensus 173 LkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny--L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE 250 (877)
T KOG1059|consen 173 LKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY--LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE 250 (877)
T ss_pred HhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--ccccHHHHHHHhccCCCeehHHHHHHHhhccccC
Confidence 6799999999999999999999999999999999999999987 5688888888766677778888999999998877
Q ss_pred cccchHhhhHHhhhccHHHHHHHHhhcCCCC-hhHHHHHHHHHHcc-----CCCChhHHHHHHHHHHHHhccCchHHHHH
Q 008746 207 ASTSEEASREREALISKPVIYYLLNRIKEFS-EWAQCLVLELVAKY-----VPLDSNEIFDIMNLLEDRLQHANGAVVLS 280 (555)
Q Consensus 207 ~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~-pw~q~~iL~~L~~~-----~~~~~~~~~~i~~~l~~~L~s~~~aV~~e 280 (555)
|...-. .+..|++.+.... --+--..+...-.. .+++.....--++.+..++.+.++...|=
T Consensus 251 PRLgKK------------Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYl 318 (877)
T KOG1059|consen 251 PRLGKK------------LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYL 318 (877)
T ss_pred chhhhh------------hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHH
Confidence 743221 2222222211110 00111111111111 23344444555667777788888888888
Q ss_pred HHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCC--cccccccceeeeccCCcHHHHHHH
Q 008746 281 TIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP--FIFASDYKHFYCQYNEPSYVKKLK 358 (555)
Q Consensus 281 ai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p--~~~~~~~~~f~~~~~dd~~Ir~~a 358 (555)
+..++..+.+..+.. +..-...+++.|.+.|+++|.-||+.+.-++.... ++++.-+.++ ...++...|-.-
T Consensus 319 gLlam~KI~ktHp~~----Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~--~~ae~t~yrdel 392 (877)
T KOG1059|consen 319 GLLAMSKILKTHPKA----VQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHV--EKAEGTNYRDEL 392 (877)
T ss_pred HHHHHHHHhhhCHHH----HHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HhccchhHHHHH
Confidence 877777777655432 22223455677899999999999999998876542 2222222222 234556788888
Q ss_pred HHHHHHccCCCCHHHHHHH------HHHHhhcCCHHHHHHHHHHHHHHhcccCcHH-HHHHHHHHHhhc
Q 008746 359 LEMLTAVANESNTYEIVTE------LCEYAANVDIPIARESIRAVGKIALQQYDVN-AIVDRLLQFLEM 420 (555)
Q Consensus 359 L~iL~~l~~~~N~~~Iv~e------L~~y~~~~d~~~~~~~i~~i~~la~~~~~~~-~~i~~ll~ll~~ 420 (555)
+.-+..+|..+|-..|.+. |.+..+-...+-...+-.-|-.++.+.|... --+..+..++.+
T Consensus 393 l~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~ 461 (877)
T KOG1059|consen 393 LTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDD 461 (877)
T ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhc
Confidence 8889999999988777542 1222222233344556666777788887743 346666666663
No 24
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2e-06 Score=90.15 Aligned_cols=328 Identities=16% Similarity=0.161 Sum_probs=216.0
Q ss_pred HhcCCCChHHHHHHHHHHhHcCCC-ChHHHHHHHHHhcCCChhhhHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHhhhC
Q 008746 89 NYAKVNPDLALLTINFLQRDCKDE-DPMIRGLALRSLCSLRVANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHIS 166 (555)
Q Consensus 89 ~~~~~~~e~~~l~in~l~kDL~~~-n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l-~d~~~~VRk~A~lal~kl~~~~ 166 (555)
.....+++..+-++..++|.+... ||-+. .++.. | ++|.+..++ .+.+|.+|..||.|+..+..-.
T Consensus 74 ~~~S~~~~~q~~a~~~~rkllS~~~~ppi~-~vi~~-G----------~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt 141 (514)
T KOG0166|consen 74 ALYSDDPQQQLTATQAFRKLLSKERNPPID-EVIQS-G----------VVPRLVEFLSRDDNPTLQFEAAWALTNIASGT 141 (514)
T ss_pred HHhCCCHHHHHHHHHHHHHHHccCCCCCHH-HHHHc-C----------cHHHHHHHHccCCChhHHHHHHHHHHHHhcCc
Confidence 334445556667777777777543 33332 23333 2 344445555 4778999999999999998744
Q ss_pred C---CcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCCh-hHHH
Q 008746 167 A---PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSE-WAQC 242 (555)
Q Consensus 167 p---~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~p-w~q~ 242 (555)
+ ..+.+.+.++.+..+ +.+++..|+-.|+-+|..|..+.|. |++. .++...+..|+..+...++ -...
T Consensus 142 se~T~~vv~agavp~fi~L-l~s~~~~v~eQavWALgNIagds~~-----~Rd~--vl~~g~l~pLl~~l~~~~~~~~lR 213 (514)
T KOG0166|consen 142 SEQTKVVVDAGAVPIFIQL-LSSPSADVREQAVWALGNIAGDSPD-----CRDY--VLSCGALDPLLRLLNKSDKLSMLR 213 (514)
T ss_pred hhhccccccCCchHHHHHH-hcCCcHHHHHHHHHHHhccccCChH-----HHHH--HHhhcchHHHHHHhccccchHHHH
Confidence 3 334567888998888 6999999999999999999877653 5443 2443467777777777666 2333
Q ss_pred HHHHHHHccCCC----Ch-hHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCc
Q 008746 243 LVLELVAKYVPL----DS-NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSP 316 (555)
Q Consensus 243 ~iL~~L~~~~~~----~~-~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~ 316 (555)
.+..+|..+++. .+ +....+++.+..++++.++-|+-.|.-++-++.....+..+.+++ .+.+-|+.+|...++
T Consensus 214 n~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~ 293 (514)
T KOG0166|consen 214 NATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP 293 (514)
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc
Confidence 344456665433 22 455778899999999999999988888888887544443344443 344556778888999
Q ss_pred hhHHHHHHHHHHHHhhCCc----c----cccccceeeeccCCcHHHHHHHHHHHHHccCCCCHHH--------HHHHHHH
Q 008746 317 EQSYAVLSHLHILVMRAPF----I----FASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYE--------IVTELCE 380 (555)
Q Consensus 317 ~~ry~aL~~l~~l~~~~p~----~----~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~--------Iv~eL~~ 380 (555)
+++-.||+++.-++.-... + .-+++..+ ...+....||+.|.=++..++. .|.+. +++.|..
T Consensus 294 ~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~l-l~~s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~ 371 (514)
T KOG0166|consen 294 KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNL-LSSSPKESIKKEACWTISNITA-GNQEQIQAVIDANLIPVLIN 371 (514)
T ss_pred ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHH-hccCcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHH
Confidence 9999999998875432211 0 11222221 1225556699999999999876 45533 4777888
Q ss_pred HhhcCCHHHHHHHHHHHHHHhccc-CcHH------HHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 008746 381 YAANVDIPIARESIRAVGKIALQQ-YDVN------AIVDRLLQFLEMEKDYVTAEALVLVKDLLR 438 (555)
Q Consensus 381 y~~~~d~~~~~~~i~~i~~la~~~-~~~~------~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~ 438 (555)
-+.+.|...+.++.-+|+.++..- ++-. .++.-+.++|......+..-++..+..|+.
T Consensus 372 ~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 372 LLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILK 436 (514)
T ss_pred HHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHH
Confidence 888889889999999999888652 2211 145566666655444444445555555443
No 25
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.6e-06 Score=91.37 Aligned_cols=392 Identities=14% Similarity=0.178 Sum_probs=227.4
Q ss_pred HHhHcCCCChHHHHHHHHHhcCC-ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHH
Q 008746 105 LQRDCKDEDPMIRGLALRSLCSL-RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLM 183 (555)
Q Consensus 105 l~kDL~~~n~~vr~lAL~~L~~i-~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~ll 183 (555)
|..-|.+.+.-...-|++.+-.+ ..-+=+..+.|.|.+....+|+.|||-..+-+++.....|+.. -=-+..+++.
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA--LLSIntfQk~- 116 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA--LLSINTFQKA- 116 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce--eeeHHHHHhh-
Confidence 34445666677777776655443 2222256678889999999999999999999999999999875 3356788888
Q ss_pred hcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHH
Q 008746 184 LNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIM 263 (555)
Q Consensus 184 l~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~ 263 (555)
+.|+|+.+++.|+.++..|--. .+.+-..-.+-+...+++|..+-..-..+.++..-++++...+.
T Consensus 117 L~DpN~LiRasALRvlSsIRvp--------------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~ 182 (968)
T KOG1060|consen 117 LKDPNQLIRASALRVLSSIRVP--------------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE 182 (968)
T ss_pred hcCCcHHHHHHHHHHHHhcchh--------------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH
Confidence 6999999999999999987311 11110111122346789999999998989888888888888999
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhC---Cccc---
Q 008746 264 NLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA---PFIF--- 337 (555)
Q Consensus 264 ~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~---p~~~--- 337 (555)
+.+..+|.+.++-|+-.|+-++-.+.+..-++.-.=+.++. +++-+-+.==+.+.+..|.+-++.+ |...
T Consensus 183 e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC----~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~ 258 (968)
T KOG1060|consen 183 EVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLC----RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSS 258 (968)
T ss_pred HHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHH----hhccchhhhhHHHHHHHHHHHHHhcCCCccccccc
Confidence 99999999999999999988887777643222111122332 2332222223566667766665542 3110
Q ss_pred -----------------------ccccceee-----eccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHH
Q 008746 338 -----------------------ASDYKHFY-----CQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPI 389 (555)
Q Consensus 338 -----------------------~~~~~~f~-----~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~ 389 (555)
.++.+.|. |+.+..+++-...-++.+.++-..-+..|++-|...+++ +.+.
T Consensus 259 ~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs-~~~v 337 (968)
T KOG1060|consen 259 LEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS-NREV 337 (968)
T ss_pred cccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc-CCcc
Confidence 01111111 233444555666666667776666666666666665554 3455
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHHHhhcccchhHHHH--HHHHHHHHHhCCCCcchHHHHHhhhcccCCC--chHHH
Q 008746 390 ARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEA--LVLVKDLLRKYPQWSHDCIAVVGSISSQNVQ--EPKAK 465 (555)
Q Consensus 390 ~~~~i~~i~~la~~~~~~~~~i~~ll~ll~~~~~~v~~e~--i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~--~~~~~ 465 (555)
+.-+.+.|+.++.+.|.. +-..+..++-...+-..-.. +..+..|+.. . ++-.++.++- .++. +-++-
T Consensus 338 qyvvL~nIa~~s~~~~~l--F~P~lKsFfv~ssDp~~vk~lKleiLs~La~e-s----ni~~ILrE~q-~YI~s~d~~fa 409 (968)
T KOG1060|consen 338 QYVVLQNIATISIKRPTL--FEPHLKSFFVRSSDPTQVKILKLEILSNLANE-S----NISEILRELQ-TYIKSSDRSFA 409 (968)
T ss_pred hhhhHHHHHHHHhcchhh--hhhhhhceEeecCCHHHHHHHHHHHHHHHhhh-c----cHHHHHHHHH-HHHhcCchhHH
Confidence 556666666666665541 11112222211111111011 1122222110 0 1112333321 1222 22355
Q ss_pred HHHHHHHhccccCCCC-hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Q 008746 466 AALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAA 527 (555)
Q Consensus 466 ~~~~wiiGEy~~~~~~-~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~v 527 (555)
++++--||..+..+.. .+.++.-|+....+.+ ..|-.+....+=++.-..|.+-..++.++
T Consensus 410 a~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshd-e~Vv~eaV~vIk~Llq~~p~~h~~ii~~L 471 (968)
T KOG1060|consen 410 AAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHD-ELVVAEAVVVIKRLLQKDPAEHLEILFQL 471 (968)
T ss_pred HHHHHHHHHHHHhhCchhhHHHHHHHHHHhccc-chhHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 5667778887777643 5566666666655555 55555555555444444443333344433
No 26
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.82 E-value=1.4e-07 Score=87.81 Aligned_cols=143 Identities=20% Similarity=0.264 Sum_probs=103.6
Q ss_pred ChHHHHHHHHHhcCC--ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChH
Q 008746 113 DPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (555)
Q Consensus 113 n~~vr~lAL~~L~~i--~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~ 190 (555)
||.+|+.|+.++|.+ +.|.+++...+.+.++|.|++|.||+.|+.++.++...+.-.+ +..+...+..+ +.|+|+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~-k~~l~~~~l~~-l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV-KGQLFSRILKL-LVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee-hhhhhHHHHHH-HcCCCHH
Confidence 689999999999975 6689999999999999999999999999999999998665544 23443455555 5999999
Q ss_pred HHHHHHHHHHHHHhh-ccccchHhhhHHhhhccHHHHHHHHhhcCCCChh---------HHHHHHHHHHccCCCChhHHH
Q 008746 191 VVANCLSALQEIWSL-EASTSEEASREREALISKPVIYYLLNRIKEFSEW---------AQCLVLELVAKYVPLDSNEIF 260 (555)
Q Consensus 191 V~~~a~~~L~~i~~~-~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw---------~q~~iL~~L~~~~~~~~~~~~ 260 (555)
|+..|...+.++... .|+. + .+.+..++..++.+..| -...++++|-.+... ++..+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~-----------i-~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~ 145 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNI-----------I-YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKE 145 (178)
T ss_pred HHHHHHHHHHHHHHhccchH-----------H-HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHH
Confidence 999999999999876 4431 1 12455555555554433 345667766666643 34445
Q ss_pred HHHHHHHHHh
Q 008746 261 DIMNLLEDRL 270 (555)
Q Consensus 261 ~i~~~l~~~L 270 (555)
.+++.+...+
T Consensus 146 ~l~~kl~~~~ 155 (178)
T PF12717_consen 146 SLVEKLCQRF 155 (178)
T ss_pred HHHHHHHHHH
Confidence 5555554433
No 27
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=8.9e-06 Score=91.22 Aligned_cols=372 Identities=14% Similarity=0.142 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHHhcC-CCc--chhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCCh----HHHHHHHHHHhHcCCCChH
Q 008746 43 SKRELFKKVISYMTIG-IDV--SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPD----LALLTINFLQRDCKDEDPM 115 (555)
Q Consensus 43 ~k~~~l~kli~~~~~G-~d~--s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e----~~~l~in~l~kDL~~~n~~ 115 (555)
.-+..+..+|.-...+ .|- +.+..-+.....|+|...|-++.+.+..+...-++ ..-...+-|.+-++|+...
T Consensus 95 ~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~ 174 (1075)
T KOG2171|consen 95 SVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP 174 (1075)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch
Confidence 4455567778877765 222 22344445567899999999998888776543222 2235567888899988877
Q ss_pred HHHHHHHHhcCCC-----h-------hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHH
Q 008746 116 IRGLALRSLCSLR-----V-------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLM 183 (555)
Q Consensus 116 vr~lAL~~L~~i~-----~-------~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~ll 183 (555)
||..|+|+++.+. + .+++|.++..+.+.+.+.+...-+-+..++.-+....|..+ ...+..+..+.
T Consensus 175 vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l--~~~l~~ii~~~ 252 (1075)
T KOG2171|consen 175 VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL--RPHLSQIIQFS 252 (1075)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH--HHHHHHHHHHH
Confidence 9999999999861 1 22444455555555667777777888888888877777665 22222222221
Q ss_pred -----hcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCC---CChhH---------------
Q 008746 184 -----LNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE---FSEWA--------------- 240 (555)
Q Consensus 184 -----l~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~---~~pw~--------------- 240 (555)
..+-|.++|..|+..+..+.+.-|. .|...-.+.+ +.+..++....+ -++|.
T Consensus 253 l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~----~~k~~~~~~~-~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~ 327 (1075)
T KOG2171|consen 253 LEIAKNKELENSIRHLALEFLVSLSEYAPA----MCKKLALLGH-TLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYR 327 (1075)
T ss_pred HHHhhcccccHHHHHHHHHHHHHHHHhhHH----Hhhhchhhhc-cHHHHHHHhcCCcccchhhccccccccccccCcHH
Confidence 3567889999999999888765332 1222212233 245555544221 23443
Q ss_pred -HHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhH
Q 008746 241 -QCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQS 319 (555)
Q Consensus 241 -q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~r 319 (555)
-...|+.++.-.+. ..-...+++.+..+++|.+..-+.+|..++..+...-++.-..-++++.+....++++.+|.+|
T Consensus 328 ~A~~~lDrlA~~L~g-~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr 406 (1075)
T KOG2171|consen 328 AAEQALDRLALHLGG-KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVR 406 (1075)
T ss_pred HHHHHHHHHHhcCCh-hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 23444444443322 1234457788888999999888888888777665544443334567888888889999999999
Q ss_pred HHHHHHHHHHHhhCC-cccccccceee----eccCCc--HHHHHHHHHHHHHc---cCCCCHHHHHHHHHH----Hhh-c
Q 008746 320 YAVLSHLHILVMRAP-FIFASDYKHFY----CQYNEP--SYVKKLKLEMLTAV---ANESNTYEIVTELCE----YAA-N 384 (555)
Q Consensus 320 y~aL~~l~~l~~~~p-~~~~~~~~~f~----~~~~dd--~~Ir~~aL~iL~~l---~~~~N~~~Iv~eL~~----y~~-~ 384 (555)
|.|+..+.++....+ ++-+.|-..+. ...+++ ..+..-|-.-+... |..+-+..-++.|.+ .+. +
T Consensus 407 ~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~ 486 (1075)
T KOG2171|consen 407 YAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS 486 (1075)
T ss_pred HHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999976643 33222222111 112333 33444444444432 333333333333332 333 3
Q ss_pred CCHHHHHHHHHHHHHHhcccCc-HHHHHHHH----HHHhhccc
Q 008746 385 VDIPIARESIRAVGKIALQQYD-VNAIVDRL----LQFLEMEK 422 (555)
Q Consensus 385 ~d~~~~~~~i~~i~~la~~~~~-~~~~i~~l----l~ll~~~~ 422 (555)
..+.++..++.+||..|..-.. ...|++++ ..+|.+++
T Consensus 487 ~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 487 SKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC
Confidence 4567788899999988864222 23355544 44454443
No 28
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=5.6e-06 Score=87.41 Aligned_cols=393 Identities=17% Similarity=0.199 Sum_probs=235.2
Q ss_pred hhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcC-------CChhhhHHHHHHHHh
Q 008746 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCS-------LRVANLVEYLVGPLG 141 (555)
Q Consensus 69 i~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~-------i~~~ei~~~l~~~i~ 141 (555)
++...|+|.+.++-+-..+..+.. .||..=-.+ .+.-++++.+..+|++|=-.|-| .-.++....+-..+.
T Consensus 19 Lk~s~Spn~~~~~~~~~~leq~~~-~pdfnnYL~-~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l 96 (885)
T KOG2023|consen 19 LKNSQSPNSETRNNVQEKLEQFNL-FPDFNNYLI-YILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECL 96 (885)
T ss_pred HHhccCCChHHHHHHHHHHHHHhc-ccchhceee-EEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHH
Confidence 344456777777777776666644 566410000 12335566666667666222221 223456666677777
Q ss_pred hccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhc
Q 008746 142 LGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALI 221 (555)
Q Consensus 142 ~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll 221 (555)
+++.|++|.||-+.-.-+..++....- ..-|+..+.|.++ ++.+|....-.|+.+|..|+.+.+. .+
T Consensus 97 ~~lgd~~~lIr~tvGivITTI~s~~~~-~~wpelLp~L~~~-L~s~d~n~~EgA~~AL~KIcEDsa~-----------~l 163 (885)
T KOG2023|consen 97 HGLGDASPLIRATVGIVITTIASTGGL-QHWPELLPQLCEL-LDSPDYNTCEGAFGALQKICEDSAQ-----------FL 163 (885)
T ss_pred hhccCchHHHHhhhhheeeeeeccccc-ccchhHHHHHHHH-hcCCcccccchhHHHHHHHHhhhHH-----------HH
Confidence 888899999998877766666543321 1125667788887 5888888888999999999876432 11
Q ss_pred cHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcch-hHHHHH
Q 008746 222 SKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQQVY 300 (555)
Q Consensus 222 ~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~-~~~~~l 300 (555)
.. +|. . +-..-+++.+..+.+|.+|.++-.|+.++-.+-...+. +-. -+
T Consensus 164 ds--------------~~~--------~-------rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~-~i 213 (885)
T KOG2023|consen 164 DS--------------DVL--------T-------RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYV-HI 213 (885)
T ss_pred hh--------------hcc--------c-------CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHH-HH
Confidence 10 111 0 11223566777788889988888888877655443321 100 12
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccccccccee-----eeccCCcHHHHHHHHHHHHHccCCCCHHHHH
Q 008746 301 ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF-----YCQYNEPSYVKKLKLEMLTAVANESNTYEIV 375 (555)
Q Consensus 301 ~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f-----~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv 375 (555)
++....+..+-++.+|++|-.+-+++..+....|+-..+|+..+ ....|.|+.|...|-|-..++|...-.+.++
T Consensus 214 D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L 293 (885)
T KOG2023|consen 214 DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVL 293 (885)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHH
Confidence 33333445566789999999999999999999999888988632 1234667889999999999999887555554
Q ss_pred HHHH--------H---H-------hhcC---------CHH-------------------------------------HHH
Q 008746 376 TELC--------E---Y-------AANV---------DIP-------------------------------------IAR 391 (555)
Q Consensus 376 ~eL~--------~---y-------~~~~---------d~~-------------------------------------~~~ 391 (555)
...+ . | +.+. +.+ +|+
T Consensus 294 ~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRk 373 (885)
T KOG2023|consen 294 QPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRK 373 (885)
T ss_pred HHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhh
Confidence 3322 1 1 1100 000 233
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHhhcc---cchhHHHH-HHHHHHHHHh-----CCCCcchHHHHHhhhcccCCCch
Q 008746 392 ESIRAVGKIALQQYDVNAIVDRLLQFLEME---KDYVTAEA-LVLVKDLLRK-----YPQWSHDCIAVVGSISSQNVQEP 462 (555)
Q Consensus 392 ~~i~~i~~la~~~~~~~~~i~~ll~ll~~~---~~~v~~e~-i~~i~~ii~~-----~~~~~~~~~~~l~~l~~~~~~~~ 462 (555)
-...++..+|.-|++ .+++.++-+++.. ..-...|+ +-++-.|... +|.+. ..+..+.+++ +.+-+
T Consensus 374 CSAAaLDVLanvf~~--elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~L--~DKkp 448 (885)
T KOG2023|consen 374 CSAAALDVLANVFGD--ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSLL--DDKKP 448 (885)
T ss_pred ccHHHHHHHHHhhHH--HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHHh--ccCcc
Confidence 445555555554443 2344444444331 12233332 3344455443 44443 2333444444 34567
Q ss_pred HHHHHHHHHHhccccCCCC-h-----HHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 008746 463 KAKAALIWMLGEYSQDMQD-A-----PYILESLTENWEEEPSAEVRLHLLTAVMKC 512 (555)
Q Consensus 463 ~~~~~~~wiiGEy~~~~~~-~-----~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl 512 (555)
-+|.-.+|-+|.|+..+.. . ..++..+.++..+.. ..||-++-+|++-+
T Consensus 449 lVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~N-K~VQEAAcsAfAtl 503 (885)
T KOG2023|consen 449 LVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN-KKVQEAACSAFATL 503 (885)
T ss_pred ceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhccc-HHHHHHHHHHHHHH
Confidence 7788889999999988732 2 234556666666666 88888877777665
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.67 E-value=5e-05 Score=82.33 Aligned_cols=279 Identities=14% Similarity=0.151 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHHhcCCCcchhH----HHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHH-----HHHHHHhHcCCCC
Q 008746 43 SKRELFKKVISYMTIGIDVSAVF----GEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL-----TINFLQRDCKDED 113 (555)
Q Consensus 43 ~k~~~l~kli~~~~~G~d~s~lf----~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l-----~in~l~kDL~~~n 113 (555)
+..+..+.++...+...+...+. ..+...+.+++..+|+++.-.+..+.+.+....-+ +...+..-+.+++
T Consensus 53 e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d 132 (503)
T PF10508_consen 53 EQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD 132 (503)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc
Confidence 44455555555555444443333 33356788999999999999998887665442222 2455667789999
Q ss_pred hHHHHHHHHHhcCCCh-hhhHHHH-----HHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc---cCCCchHHHHHHHh
Q 008746 114 PMIRGLALRSLCSLRV-ANLVEYL-----VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLML 184 (555)
Q Consensus 114 ~~vr~lAL~~L~~i~~-~ei~~~l-----~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~---~~~~~~~~l~~lll 184 (555)
..+...|+++|.++.. +...+.+ ...+.+++..+++.||..+...+.++.+.+|+.. ...++++.+... +
T Consensus 133 ~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~e-L 211 (503)
T PF10508_consen 133 LSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKE-L 211 (503)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHH-h
Confidence 9999999999999843 4444555 7788888888899999999999999999888865 235678888777 5
Q ss_pred cCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCC--CCh-hHH---HHHHHHHHccCCCChhH
Q 008746 185 NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE--FSE-WAQ---CLVLELVAKYVPLDSNE 258 (555)
Q Consensus 185 ~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~--~~p-w~q---~~iL~~L~~~~~~~~~~ 258 (555)
++.|.-|+.+++..+.+++..+.+ ..++.....+.+|++.+.+ .+| +.- ...+++++.....+|..
T Consensus 212 ~~dDiLvqlnalell~~La~~~~g--------~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~ 283 (503)
T PF10508_consen 212 DSDDILVQLNALELLSELAETPHG--------LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQE 283 (503)
T ss_pred cCccHHHHHHHHHHHHHHHcChhH--------HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHH
Confidence 778999999999999999884432 1222333366777776543 345 333 33444444444334433
Q ss_pred H----HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHH-------HHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 008746 259 I----FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQ-------VYERIKAPLLTLVSSGSPEQSYAVLSHLH 327 (555)
Q Consensus 259 ~----~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~-------~l~~i~~~L~~ll~~~~~~~ry~aL~~l~ 327 (555)
. ..+++.+...+.+.++.....|+.++..++..... +.. .+..+.........+...++|-.+|+++.
T Consensus 284 v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G-~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~ 362 (503)
T PF10508_consen 284 VLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG-KQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALA 362 (503)
T ss_pred HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH-HHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3 34566666777888888888888888777654321 111 11112222233344455677777777777
Q ss_pred HHHh
Q 008746 328 ILVM 331 (555)
Q Consensus 328 ~l~~ 331 (555)
.+..
T Consensus 363 ~il~ 366 (503)
T PF10508_consen 363 SILT 366 (503)
T ss_pred HHHh
Confidence 6653
No 30
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.52 E-value=4.7e-07 Score=73.60 Aligned_cols=87 Identities=29% Similarity=0.295 Sum_probs=70.6
Q ss_pred HHHHHhHc-CCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHH
Q 008746 102 INFLQRDC-KDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (555)
Q Consensus 102 in~l~kDL-~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~ 180 (555)
+..|.+.+ +++|+.+|..|+++||.++.++.. +.+.++++|+++.||..|+.+++++- + ++.++.|.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~----~~L~~~l~d~~~~vr~~a~~aL~~i~--~------~~~~~~L~ 68 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDPEAI----PALIELLKDEDPMVRRAAARALGRIG--D------PEAIPALI 68 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHH----HHHHHHHTSSSHHHHHHHHHHHHCCH--H------HHTHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHH----HHHHHHHcCCCHHHHHHHHHHHHHhC--C------HHHHHHHH
Confidence 35677778 899999999999999999988764 55557779999999999999999884 2 44668888
Q ss_pred HHHhcCCChHHHHHHHHHHH
Q 008746 181 HLMLNDPDPQVVANCLSALQ 200 (555)
Q Consensus 181 ~lll~d~d~~V~~~a~~~L~ 200 (555)
+++.+|.+..|+.+|+.+|.
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 87666778888999888763
No 31
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00046 Score=74.50 Aligned_cols=435 Identities=14% Similarity=0.194 Sum_probs=253.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc------chhHHHhhhhcCCCCchhHHHHHHHHHHhcC--------------------
Q 008746 39 GIDDSKRELFKKVISYMTIGIDV------SAVFGEMVMCSATSDIVLKKMCYLYVGNYAK-------------------- 92 (555)
Q Consensus 39 ~~~~~k~~~l~kli~~~~~G~d~------s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~-------------------- 92 (555)
++.+-+..++..+..+|++-|+. ..+|+.-+..|-|++.+++--|--||+...+
T Consensus 229 ~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~ 308 (859)
T KOG1241|consen 229 PDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPS 308 (859)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch
Confidence 34556667777777777776543 2245544677778888888888888884321
Q ss_pred ------------------------CCCh------------------------HHHHHHHHHHhHcCCCChHHHHHHHHHh
Q 008746 93 ------------------------VNPD------------------------LALLTINFLQRDCKDEDPMIRGLALRSL 124 (555)
Q Consensus 93 ------------------------~~~e------------------------~~~l~in~l~kDL~~~n~~vr~lAL~~L 124 (555)
+++| +.-.+...+..-+++||+..|-.|.-+.
T Consensus 309 ~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAF 388 (859)
T KOG1241|consen 309 SKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAF 388 (859)
T ss_pred hhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHH
Confidence 1111 1223445556688999999999999999
Q ss_pred cCCCh-------hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCch-HHHHHHH--hcCCChHHHHH
Q 008746 125 CSLRV-------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFP-PTLKHLM--LNDPDPQVVAN 194 (555)
Q Consensus 125 ~~i~~-------~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~-~~l~~ll--l~d~d~~V~~~ 194 (555)
|++-. ..+.+...|.+.+++.|++-.||.+|+-+++|++...|+.+...... ..+..++ ++| .|.|..+
T Consensus 389 GSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N 467 (859)
T KOG1241|consen 389 GSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASN 467 (859)
T ss_pred HhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHH
Confidence 99732 23677888999999999999999999999999999999877432222 2333221 344 7999999
Q ss_pred HHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhc----C--C-CChhHHHHHHHHHHccCCCChhHHHH------
Q 008746 195 CLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI----K--E-FSEWAQCLVLELVAKYVPLDSNEIFD------ 261 (555)
Q Consensus 195 a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l----~--~-~~pw~q~~iL~~L~~~~~~~~~~~~~------ 261 (555)
+.-++..+.+.-+....+. .--.... +.+..+++.| . + -..-++...-..|.......+++...
T Consensus 468 ~CWAf~~Laea~~eA~~s~--~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~ 544 (859)
T KOG1241|consen 468 VCWAFISLAEAAYEAAVSN--GQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLT 544 (859)
T ss_pred HHHHHHHHHHHHHHhccCC--CCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 8888887765332110000 0000111 1333333332 1 1 12346666666666654444433221
Q ss_pred --HHHHHHHHhc-----cCc-------hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHH
Q 008746 262 --IMNLLEDRLQ-----HAN-------GAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSS-GSPEQSYAVLSHL 326 (555)
Q Consensus 262 --i~~~l~~~L~-----s~~-------~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~-~~~~~ry~aL~~l 326 (555)
++..+...++ ..+ -+++..++..++..-.+ +. .+.-+.+.+.+.+.+++ +..-+.--|+-.+
T Consensus 545 l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~--~~-~~~~d~iM~lflri~~s~~s~~v~e~a~laV 621 (859)
T KOG1241|consen 545 LVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS--DI-REVSDQIMGLFLRIFESKRSAVVHEEAFLAV 621 (859)
T ss_pred HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc--cc-hhHHHHHHHHHHHHHcCCccccchHHHHHHH
Confidence 2222332232 111 14566666666533222 21 22335566677777776 4444666777777
Q ss_pred HHHHhhCCcccccccceee------eccCCcHHHHHHHHHHHHHccCCCC------HHHHHHHHHHHhhcC--CHHHHHH
Q 008746 327 HILVMRAPFIFASDYKHFY------CQYNEPSYVKKLKLEMLTAVANESN------TYEIVTELCEYAANV--DIPIARE 392 (555)
Q Consensus 327 ~~l~~~~p~~~~~~~~~f~------~~~~dd~~Ir~~aL~iL~~l~~~~N------~~~Iv~eL~~y~~~~--d~~~~~~ 392 (555)
..++..-..-|.+|+..|. ..+-.+..+...++.+...+++.-+ .+.+...|...+.+. +.+++-.
T Consensus 622 ~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~ 701 (859)
T KOG1241|consen 622 STLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPA 701 (859)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccch
Confidence 7666655455666666553 2245567788999999888876532 334566666676664 5667778
Q ss_pred HHHHHHHHhcccC-cHHHHHHHHHHHhhccc-------c-----h---hHHHHHHHHHHHHHhCC---CC---c---chH
Q 008746 393 SIRAVGKIALQQY-DVNAIVDRLLQFLEMEK-------D-----Y---VTAEALVLVKDLLRKYP---QW---S---HDC 447 (555)
Q Consensus 393 ~i~~i~~la~~~~-~~~~~i~~ll~ll~~~~-------~-----~---v~~e~i~~i~~ii~~~~---~~---~---~~~ 447 (555)
++...|.+|..-- +...|++.++.++.... + | +.+.++..+.-|++... +. + +.+
T Consensus 702 IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I 781 (859)
T KOG1241|consen 702 ILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHI 781 (859)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHH
Confidence 8889999987643 34556676666665431 1 1 22333444444444322 21 1 123
Q ss_pred HHHHhhhcccCCCchHHHHHHHHHHhccccCCC
Q 008746 448 IAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ 480 (555)
Q Consensus 448 ~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~ 480 (555)
+.++.++-.+...+..+.++++-+||.-+..++
T Consensus 782 ~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg 814 (859)
T KOG1241|consen 782 ISFIDRIAAEPDVSEALHAAALGLIGDLATMFG 814 (859)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHHHHHHHcc
Confidence 333444322222245566778888887665553
No 32
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=6.6e-05 Score=79.59 Aligned_cols=385 Identities=16% Similarity=0.179 Sum_probs=221.1
Q ss_pred HHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhh-----hCCCcccCCCchHHHHHHHhcCCChHHH
Q 008746 118 GLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH-----ISAPTCIDADFPPTLKHLMLNDPDPQVV 192 (555)
Q Consensus 118 ~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~-----~~p~~~~~~~~~~~l~~lll~d~d~~V~ 192 (555)
+.||..|+++-..++.+.+.|.+++.|.+..-.||-++++|++.+.. .+|.+ +++++.+..+ ++|+-|-|+
T Consensus 376 AAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L---peLip~l~~~-L~DKkplVR 451 (885)
T KOG2023|consen 376 AAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL---PELIPFLLSL-LDDKKPLVR 451 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch---HHHHHHHHHH-hccCcccee
Confidence 46799999999999999999999999999999999999999999875 33443 6788999998 699999999
Q ss_pred HHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHH---
Q 008746 193 ANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDR--- 269 (555)
Q Consensus 193 ~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~--- 269 (555)
.-++=.|..-++.-. +.....++ ++.+..|++.+-+.+-|+|-.....++.+.-+-.++...+++.+...
T Consensus 452 sITCWTLsRys~wv~------~~~~~~~f-~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~ 524 (885)
T KOG2023|consen 452 SITCWTLSRYSKWVV------QDSRDEYF-KPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVF 524 (885)
T ss_pred eeeeeeHhhhhhhHh------cCChHhhh-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 888777776544211 11122223 34677788888899999999999998888633223333333332221
Q ss_pred ----hccCchHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHHH---HHhcCCCchhHHHHHHHHHHHHhhCCccccccc
Q 008746 270 ----LQHANGAVVLSTIKVFLHL-TLSMTDVHQQVYERIKAPLL---TLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (555)
Q Consensus 270 ----L~s~~~aV~~eai~~i~~l-~~~~~~~~~~~l~~i~~~L~---~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~ 341 (555)
-++.|--|+|.|+.++-+- +.... +.+-++.+.+||+ .+++++|.++ |--|+.+..++..-..-|.|+.
T Consensus 525 af~kYQ~KNLlILYDAIgtlAdsvg~~Ln--~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~ 601 (885)
T KOG2023|consen 525 AFGKYQKKNLLILYDAIGTLADSVGHALN--KPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYA 601 (885)
T ss_pred HHHHHhhcceehHHHHHHHHHHHHHHhcC--cHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccC
Confidence 3567888999999998632 21110 1112344556654 4466666664 4556666655443221122211
Q ss_pred ce---------------eeeccC------CcHHHHHHHHHHHHHccCC--CCHHH------HHHHHHHHhhcCCHHHHHH
Q 008746 342 KH---------------FYCQYN------EPSYVKKLKLEMLTAVANE--SNTYE------IVTELCEYAANVDIPIARE 392 (555)
Q Consensus 342 ~~---------------f~~~~~------dd~~Ir~~aL~iL~~l~~~--~N~~~------Iv~eL~~y~~~~d~~~~~~ 392 (555)
.. ..+..+ .|...-..+||++.+++.. +.++. |.+-|..++.+.-+++|.-
T Consensus 602 ~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS 681 (885)
T KOG2023|consen 602 QPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQS 681 (885)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHH
Confidence 10 000011 1112234578888776422 22222 4455678888888999999
Q ss_pred HHHHHHHHhcccCc-HHHHHHHHHHHhhcc----cchhHHHHHHHHHHHHHh-CCCCcchHHHHHhhhc---ccCCCchH
Q 008746 393 SIRAVGKIALQQYD-VNAIVDRLLQFLEME----KDYVTAEALVLVKDLLRK-YPQWSHDCIAVVGSIS---SQNVQEPK 463 (555)
Q Consensus 393 ~i~~i~~la~~~~~-~~~~i~~ll~ll~~~----~~~v~~e~i~~i~~ii~~-~~~~~~~~~~~l~~l~---~~~~~~~~ 463 (555)
+.-.+|.++...++ ...++.-++.++..+ +-.+.+.++.++-+|..+ .++.+..+-.++..++ ........
T Consensus 682 ~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~t 761 (885)
T KOG2023|consen 682 AFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKT 761 (885)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHH
Confidence 99999998876433 222333333333221 223444444455555444 2233333323444443 11222333
Q ss_pred HHHHHHHHHhccccCCCC--hHHHHHHHHHhh----hcCCcHHHHHHHHHHHHHHHhcCC
Q 008746 464 AKAALIWMLGEYSQDMQD--APYILESLTENW----EEEPSAEVRLHLLTAVMKCFFKRP 517 (555)
Q Consensus 464 ~~~~~~wiiGEy~~~~~~--~~~~l~~l~~~~----~~e~~~~vr~~~L~a~~Kl~~~~p 517 (555)
+....+--||.-|...+. +| .++.+.+.+ ..-++.+.|-.+-.-++++...+|
T Consensus 762 llENtAITIGrLg~~~Pe~vAp-~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp 820 (885)
T KOG2023|consen 762 LLENTAITIGRLGYICPEEVAP-HLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNP 820 (885)
T ss_pred HHHhhhhhhhhhhccCHHhcch-hHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCc
Confidence 444445556665555432 22 222222222 122224555555555555555555
No 33
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=3.7e-05 Score=82.46 Aligned_cols=328 Identities=14% Similarity=0.164 Sum_probs=177.2
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhh
Q 008746 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASR 215 (555)
Q Consensus 136 l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~ 215 (555)
+-..+++-|.|||.|||-....-++|+ +.|+++ +.+.+.+... ++.+++-|+.+|+.++.+|.+.... ..|
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckL--kE~ELl--epl~p~Irac-leHrhsYVRrNAilaifsIyk~~~~----L~p 170 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKL--KEPELL--EPLMPSIRAC-LEHRHSYVRRNAILAIFSIYKNFEH----LIP 170 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhc--CcHHHh--hhhHHHHHHH-HhCcchhhhhhhheeehhHHhhhhh----hcC
Confidence 345677889999999999988888877 478887 7899999999 6999999999999999999875211 122
Q ss_pred HHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCch---HHHHHHHHHHHHhcCCc
Q 008746 216 EREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANG---AVVLSTIKVFLHLTLSM 292 (555)
Q Consensus 216 ~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~---aV~~eai~~i~~l~~~~ 292 (555)
+.-+ .+.+.+. .+.+|-..-...-+|.. .|++.+.+++........+-|+ .|+.|-|+-.++-.+
T Consensus 171 Dape-----Li~~fL~--~e~DpsCkRNAFi~L~~---~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p-- 238 (948)
T KOG1058|consen 171 DAPE-----LIESFLL--TEQDPSCKRNAFLMLFT---TDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANP-- 238 (948)
T ss_pred ChHH-----HHHHHHH--hccCchhHHHHHHHHHh---cCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCH--
Confidence 2222 2333322 24455444433333332 2566666666555555554444 466666666655222
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccccccccee-ee-ccCCcHHHHHHHHHHHHHccCCCC
Q 008746 293 TDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF-YC-QYNEPSYVKKLKLEMLTAVANESN 370 (555)
Q Consensus 293 ~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f-~~-~~~dd~~Ir~~aL~iL~~l~~~~N 370 (555)
..+. +-...+..||+++++.++|-+--.+..+ ...|..++.-...+ .| ....|-.+|..-|+-|+.+. .+
T Consensus 239 -~~~~----~~i~~i~~lL~stssaV~fEaa~tlv~l-S~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~ 310 (948)
T KOG1058|consen 239 -AEKA----RYIRCIYNLLSSTSSAVIFEAAGTLVTL-SNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK--AL 310 (948)
T ss_pred -HHhh----HHHHHHHHHHhcCCchhhhhhcceEEEc-cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hh
Confidence 1111 2234456677778888888766554433 23444333211110 01 11222346666777777664 33
Q ss_pred HHHHHHHH----HHHhhcCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhh-ccc------chhHHHHHHHHHHHHHh
Q 008746 371 TYEIVTEL----CEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLE-MEK------DYVTAEALVLVKDLLRK 439 (555)
Q Consensus 371 ~~~Iv~eL----~~y~~~~d~~~~~~~i~~i~~la~~~~~~~~~i~~ll~ll~-~~~------~~v~~e~i~~i~~ii~~ 439 (555)
-+.|+.+| +..+...|-+++++.+.-.-.++... +...+++.+.+-+. +.+ ....+..+..+..-..+
T Consensus 311 ~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr-Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 311 HEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR-NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred hHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc-cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence 33344443 34555567777777666655555321 12234444433222 221 11223333333334445
Q ss_pred CCCCcchHHHHHhhhcccCCCchHHHHHHHHHHhccccCCCC-hHHHHHHHHHhhhc
Q 008746 440 YPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD-APYILESLTENWEE 495 (555)
Q Consensus 440 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~-~~~~l~~l~~~~~~ 495 (555)
+|+.....+..+...+ ...++.+-..++-.+.|-.+..++ ...+++.+.+.|..
T Consensus 390 Fp~~aatvV~~ll~fi--sD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~ 444 (948)
T KOG1058|consen 390 FPEVAATVVSLLLDFI--SDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQ 444 (948)
T ss_pred ChHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhh
Confidence 7776544333332222 223344444455566665555554 33556666655543
No 34
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00014 Score=78.50 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=60.0
Q ss_pred HHHHHHHhHcCC---CChHHHHHHHHHhcCCChhh--hHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCC
Q 008746 100 LTINFLQRDCKD---EDPMIRGLALRSLCSLRVAN--LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDAD 174 (555)
Q Consensus 100 l~in~l~kDL~~---~n~~vr~lAL~~L~~i~~~e--i~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~ 174 (555)
|++|.+..-+.+ .||+-+++-+|..+.....+ ..-.+.+++..++.|+...|--.|+.++..++..++..+ ..
T Consensus 205 la~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l--~p 282 (865)
T KOG1078|consen 205 LAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL--AP 282 (865)
T ss_pred HHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc--ch
Confidence 444444444332 35555555555555542222 222456666677777777777777777777766665554 23
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 008746 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 175 ~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~ 207 (555)
.+..++-+ ++.+.+..+.+|+..|.+++...|
T Consensus 283 avs~Lq~f-lssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 283 AVSVLQLF-LSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred HHHHHHHH-hcCcHHHHHHHHHHHHHHHHHhCC
Confidence 44455544 466666667777777777666555
No 35
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0013 Score=69.55 Aligned_cols=285 Identities=13% Similarity=0.078 Sum_probs=192.8
Q ss_pred ChHHHHHHHHHHHHHHhcCCCc-------chhHHHhhhhcC-CCCchhHHHHHHHHHHhcCCCChHHHH-----HHHHHH
Q 008746 40 IDDSKRELFKKVISYMTIGIDV-------SAVFGEMVMCSA-TSDIVLKKMCYLYVGNYAKVNPDLALL-----TINFLQ 106 (555)
Q Consensus 40 ~~~~k~~~l~kli~~~~~G~d~-------s~lf~~vi~~~~-s~~~~~Krl~yl~l~~~~~~~~e~~~l-----~in~l~ 106 (555)
+.+.+..+..++-.+...+.+. +...+..++++. .++..++--+=-+++..+...++..-. ++..|.
T Consensus 79 ~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi 158 (514)
T KOG0166|consen 79 DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFI 158 (514)
T ss_pred CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHH
Confidence 3445666666666666665531 123445566665 455777777777788877766654222 245688
Q ss_pred hHcCCCChHHHHHHHHHhcCCCh--hhh-----HHHHHHHHhhccCCCCh-HHHHHHHHHHHHHhhhC-CCcc--cCCCc
Q 008746 107 RDCKDEDPMIRGLALRSLCSLRV--ANL-----VEYLVGPLGLGLKDNNS-YVRTVAVIGVLKLYHIS-APTC--IDADF 175 (555)
Q Consensus 107 kDL~~~n~~vr~lAL~~L~~i~~--~ei-----~~~l~~~i~~~l~d~~~-~VRk~A~lal~kl~~~~-p~~~--~~~~~ 175 (555)
+-+.++++.++..|.-+||++.. +.. -...++++...+..+.+ -..+.|..++-.+++.. |.-- .....
T Consensus 159 ~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~i 238 (514)
T KOG0166|consen 159 QLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPI 238 (514)
T ss_pred HHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 89999999999999999999833 221 12345666677766665 56678899999999744 4321 11346
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCC
Q 008746 176 PPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLD 255 (555)
Q Consensus 176 ~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~ 255 (555)
++.|..+ +...|+.|...|+-++.++....++. ....+....+++|...|..+++-.+.-.|+.++...-.+
T Consensus 239 Lp~L~~l-l~~~D~~Vl~Da~WAlsyLsdg~ne~-------iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~ 310 (514)
T KOG0166|consen 239 LPALLRL-LHSTDEEVLTDACWALSYLTDGSNEK-------IQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS 310 (514)
T ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHHHhcCChHH-------HHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc
Confidence 6777777 68999999999999999998654421 112232336778888888899889999999999977555
Q ss_pred hhHHHH-----HHHHHHHHhc-cCchHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHHHHHH
Q 008746 256 SNEIFD-----IMNLLEDRLQ-HANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHI 328 (555)
Q Consensus 256 ~~~~~~-----i~~~l~~~L~-s~~~aV~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~l~~ 328 (555)
.....- .++.+..++. +....+.-||+-++..+......=.+.+++ -+.+.|+.++.+.+-.+|--|.-++.-
T Consensus 311 d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN 390 (514)
T KOG0166|consen 311 DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISN 390 (514)
T ss_pred HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHh
Confidence 444333 4556777777 566679999999998887643321233333 355667888888888888887777765
Q ss_pred HHhh
Q 008746 329 LVMR 332 (555)
Q Consensus 329 l~~~ 332 (555)
+...
T Consensus 391 ~ts~ 394 (514)
T KOG0166|consen 391 LTSS 394 (514)
T ss_pred hccc
Confidence 5443
No 36
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0007 Score=70.85 Aligned_cols=312 Identities=18% Similarity=0.167 Sum_probs=188.1
Q ss_pred HHhcCCCcchh----HHHhhhhcCCCCchhHHHHHHHHHHhcCCC-ChHHH---HHHHHHHhHcCCCChHHHHHH---HH
Q 008746 54 YMTIGIDVSAV----FGEMVMCSATSDIVLKKMCYLYVGNYAKVN-PDLAL---LTINFLQRDCKDEDPMIRGLA---LR 122 (555)
Q Consensus 54 ~~~~G~d~s~l----f~~vi~~~~s~~~~~Krl~yl~l~~~~~~~-~e~~~---l~in~l~kDL~~~n~~vr~lA---L~ 122 (555)
.+.+|.|-..+ .+.|+.+++.+|..+|--++-.+-...+-- .+... .+--.+-|-..|++..+|+.| -|
T Consensus 71 ~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdR 150 (675)
T KOG0212|consen 71 AIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDR 150 (675)
T ss_pred HHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHH
Confidence 34467655333 445566777777777655555444333221 11100 112345556678888888776 34
Q ss_pred HhcCCChhh----hHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc---cCCCchHHHHHHHhcCCChHHHHHH
Q 008746 123 SLCSLRVAN----LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANC 195 (555)
Q Consensus 123 ~L~~i~~~e----i~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~---~~~~~~~~l~~lll~d~d~~V~~~a 195 (555)
.+-.+..++ -.+.++|-+..-+.+.+|++|..-+-=+..++. -|+.- .-+++.+-|-.+ ++|+++.|+.-+
T Consensus 151 LikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~~~m~~yl~~~ldGLf~~-LsD~s~eVr~~~ 228 (675)
T KOG0212|consen 151 LIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPDLEMISYLPSLLDGLFNM-LSDSSDEVRTLT 228 (675)
T ss_pred HHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCcHHHHhcchHHHHHHHHH-hcCCcHHHHHHH
Confidence 444443332 256678888888999999999876655554443 44431 115566777776 699999998555
Q ss_pred HH----HHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHH----HHHHHHHH
Q 008746 196 LS----ALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI----FDIMNLLE 267 (555)
Q Consensus 196 ~~----~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~----~~i~~~l~ 267 (555)
=. .|.+|. .+|.. ...- ..+.-+...+..+.|..|.+++.-+..+.+-.+.+. ..++..+.
T Consensus 229 ~t~l~~fL~eI~-s~P~s--------~d~~--~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iL 297 (675)
T KOG0212|consen 229 DTLLSEFLAEIR-SSPSS--------MDYD--DMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAIL 297 (675)
T ss_pred HHHHHHHHHHHh-cCccc--------cCcc--cchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcc
Confidence 44 444443 22321 0000 123334455677899999999999998876655543 33445555
Q ss_pred HHhccCchHHHHHHHH----HHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccce
Q 008746 268 DRLQHANGAVVLSTIK----VFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKH 343 (555)
Q Consensus 268 ~~L~s~~~aV~~eai~----~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~ 343 (555)
+.+.++.++=..++.. .+..+-..........+..+.+.+..++.++..+.|..+|+.+..+..+.|+-.-.|...
T Consensus 298 pc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~ 377 (675)
T KOG0212|consen 298 PCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDS 377 (675)
T ss_pred cCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccH
Confidence 5665554431122222 122222211111112345677888888988889999999999999999998755555543
Q ss_pred ee-----eccCCcHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 008746 344 FY-----CQYNEPSYVKKLKLEMLTAVANESNTYEIVTEL 378 (555)
Q Consensus 344 f~-----~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL 378 (555)
+| .+.|.+..+-.++|+++..+|++.|-....+.+
T Consensus 378 if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl 417 (675)
T KOG0212|consen 378 IFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFL 417 (675)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHH
Confidence 33 346666779999999999999988765443333
No 37
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00012 Score=79.42 Aligned_cols=298 Identities=13% Similarity=0.100 Sum_probs=162.7
Q ss_pred HhhcCCCChhHHHHHHHHHHccCCCCh--------------hH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcch
Q 008746 230 LNRIKEFSEWAQCLVLELVAKYVPLDS--------------NE-IFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD 294 (555)
Q Consensus 230 ~~~l~~~~pw~q~~iL~~L~~~~~~~~--------------~~-~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~ 294 (555)
+.+|+.+.-|+|+..+++++.=.-.+. .| ..-+.+.+..=|+|.|--|+--|..+++.+...+
T Consensus 61 i~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~E-- 138 (866)
T KOG1062|consen 61 IHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPE-- 138 (866)
T ss_pred HHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHH--
Confidence 346889999999999998876321111 12 2234566667788888888888888888876532
Q ss_pred hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccceee-eccCCcHHHHHHHHHHHHHccCCCC---
Q 008746 295 VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY-CQYNEPSYVKKLKLEMLTAVANESN--- 370 (555)
Q Consensus 295 ~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~-~~~~dd~~Ir~~aL~iL~~l~~~~N--- 370 (555)
.... +.+-+.++++.+++++|--|.....+++++.|++.+..+..|. .+.+.+..|=...+.+++.||..+-
T Consensus 139 mard----lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l 214 (866)
T KOG1062|consen 139 MARD----LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL 214 (866)
T ss_pred HhHH----hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH
Confidence 2222 2333557788899999999999999999999998766655442 2234445677788889999986631
Q ss_pred --HHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHhcccCcHHH-HHHHHHHHhhcc------cchhH
Q 008746 371 --TYEIVTELCE---------------YAANVDIPIARESIRAVGKIALQQYDVNA-IVDRLLQFLEME------KDYVT 426 (555)
Q Consensus 371 --~~~Iv~eL~~---------------y~~~~d~~~~~~~i~~i~~la~~~~~~~~-~i~~ll~ll~~~------~~~v~ 426 (555)
.+++++.|.. |-.-+||-+...+++.++.++...++.+. .-|.+-++.++. |+.+-
T Consensus 215 ~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAIL 294 (866)
T KOG1062|consen 215 SYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAIL 294 (866)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHH
Confidence 1122222221 11113455566666666666666665432 334444544432 23344
Q ss_pred HHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCCchHHHHHHHHHHhccccCCCChHHHHH-HHHHhhhcCCcHHHHHHH
Q 008746 427 AEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILE-SLTENWEEEPSAEVRLHL 505 (555)
Q Consensus 427 ~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~~~~~l~-~l~~~~~~e~~~~vr~~~ 505 (555)
.|++..|..| ..++.++.-++.++.+.+... +...|-+++-.++--.+.-+.+..==| .++++..+-+ +.+|..+
T Consensus 295 YE~V~TI~~I-~~~~~LrvlainiLgkFL~n~--d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD-~SIkrra 370 (866)
T KOG1062|consen 295 YECVRTIMDI-RSNSGLRVLAINILGKFLLNR--DNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPD-VSIKRRA 370 (866)
T ss_pred HHHHHHHHhc-cCCchHHHHHHHHHHHHhcCC--ccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 4443333322 112233333344444443111 111222222222211111111111001 2344443444 8888888
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhccCCCcchh
Q 008746 506 LTAVMKCFFKRPPETQKVLGAALAAGLADFHQVVF 540 (555)
Q Consensus 506 L~a~~Kl~~~~p~~~~~~l~~vl~~~~~d~d~evq 540 (555)
|....++-.. ...+.++++++...... |+|++
T Consensus 371 lELs~~lvn~--~Nv~~mv~eLl~fL~~~-d~~~k 402 (866)
T KOG1062|consen 371 LELSYALVNE--SNVRVMVKELLEFLESS-DEDFK 402 (866)
T ss_pred HHHHHHHhcc--ccHHHHHHHHHHHHHhc-cHHHH
Confidence 8888777543 24566666666655544 55544
No 38
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.13 E-value=0.0024 Score=70.64 Aligned_cols=332 Identities=16% Similarity=0.144 Sum_probs=188.5
Q ss_pred HHHhhhhcCCCCch-----hHHHHHHHHHHhc----CCCChHHHHHHHHHHhHcCC--CChHHHHHHHHHhcCCChh---
Q 008746 65 FGEMVMCSATSDIV-----LKKMCYLYVGNYA----KVNPDLALLTINFLQRDCKD--EDPMIRGLALRSLCSLRVA--- 130 (555)
Q Consensus 65 f~~vi~~~~s~~~~-----~Krl~yl~l~~~~----~~~~e~~~l~in~l~kDL~~--~n~~vr~lAL~~L~~i~~~--- 130 (555)
|.....+++.+-++ +-|=+|..+..+. ..-|+..--.+-.+.+|+++ .|..+|-.|+=.+|.++-.
T Consensus 773 y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~ 852 (1233)
T KOG1824|consen 773 YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL 852 (1233)
T ss_pred HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC
Confidence 55555555444433 3344454444432 12233334445577888884 5688899999999998542
Q ss_pred hhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhc-ccc
Q 008746 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE-AST 209 (555)
Q Consensus 131 ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~-~~~ 209 (555)
.-.+.+-..+.+++++++..|+++|+.|++.+.- .+. +++++.+.... +.+|-=.--.+..|.|+.... .+-
T Consensus 853 s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v--gnl---~~yLpfil~qi--~sqpk~QyLLLhSlkevi~~~svd~ 925 (1233)
T KOG1824|consen 853 SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAV--GNL---PKYLPFILEQI--ESQPKRQYLLLHSLKEVIVSASVDG 925 (1233)
T ss_pred CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc--Cch---HhHHHHHHHHH--hcchHhHHHHHHHHHHHHHHhccch
Confidence 2234455677899999999999999999999853 121 56777776653 445544444444455543321 110
Q ss_pred chHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchH---HHHHHHHHHH
Q 008746 210 SEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGA---VVLSTIKVFL 286 (555)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~a---V~~eai~~i~ 286 (555)
..+...++|.++.+ ......+..+-.+=++|+++.--+|+ .+++.+...++|..+. .+..|++.-+
T Consensus 926 ~~~~v~~IW~lL~k--------~cE~~eegtR~vvAECLGkL~l~epe---sLlpkL~~~~~S~a~~~rs~vvsavKfsi 994 (1233)
T KOG1824|consen 926 LKPYVEKIWALLFK--------HCECAEEGTRNVVAECLGKLVLIEPE---SLLPKLKLLLRSEASNTRSSVVSAVKFSI 994 (1233)
T ss_pred hhhhHHHHHHHHHH--------hcccchhhhHHHHHHHhhhHHhCChH---HHHHHHHHHhcCCCcchhhhhhheeeeee
Confidence 11122334433222 12233455677777788887665654 5677788788776654 4455555433
Q ss_pred HhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccccc-----------------------ccce
Q 008746 287 HLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFAS-----------------------DYKH 343 (555)
Q Consensus 287 ~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~-----------------------~~~~ 343 (555)
.-.+..-+. .+++..+-...++.+.|.++|-+||..+...+.+.|.++.. ++-.
T Consensus 995 sd~p~~id~---~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGP 1071 (1233)
T KOG1824|consen 995 SDQPQPIDP---LLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGP 1071 (1233)
T ss_pred cCCCCccCH---HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccC
Confidence 333221111 12212223345567899999999999999888777653211 2234
Q ss_pred eeeccCCcHHHHHHHHHHHHHccCCCCHHHH-HHHHHHHhhcC--C-HHHHHHHHHHHHHHhcccCcH-HHHHHHHHHHh
Q 008746 344 FYCQYNEPSYVKKLKLEMLTAVANESNTYEI-VTELCEYAANV--D-IPIARESIRAVGKIALQQYDV-NAIVDRLLQFL 418 (555)
Q Consensus 344 f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~I-v~eL~~y~~~~--d-~~~~~~~i~~i~~la~~~~~~-~~~i~~ll~ll 418 (555)
|..--||...+|+.|.|-+|.+.+.- .+.+ +.+++.+..+. | .+++--....+.++|..-|+. -.-+|.+++-|
T Consensus 1072 FKH~VDdgLd~RKaaFEcmytLLdsc-ld~~dit~Fl~~~~~GL~DhydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpL 1150 (1233)
T KOG1824|consen 1072 FKHTVDDGLDLRKAAFECMYTLLDSC-LDRLDITEFLNHVEDGLEDHYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPL 1150 (1233)
T ss_pred ccccccchHHHHHHHHHHHHHHHHhh-hhhccHHHHHHHHHhhcchhhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 55556888999999999999986442 1111 23333344332 2 334444445556666665652 23344444443
No 39
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.12 E-value=0.004 Score=67.22 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=70.9
Q ss_pred HHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHhhhCCCccc--CCCchH
Q 008746 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTCI--DADFPP 177 (555)
Q Consensus 101 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~-~~~VRk~A~lal~kl~~~~p~~~~--~~~~~~ 177 (555)
++.+++-|+.+.+++||...-|+.+-+.+.-=++.+.|+++....++ +.--|.+.+-++.++.-...-.+. -..+.+
T Consensus 477 mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ 556 (1172)
T KOG0213|consen 477 MISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVK 556 (1172)
T ss_pred HHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHH
Confidence 36788889999999999988888877655544566778888877766 667777777777666543322210 135667
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHh
Q 008746 178 TLKHLMLNDPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 178 ~l~~lll~d~d~~V~~~a~~~L~~i~~ 204 (555)
.+... +.|....|+.-+..++..+.+
T Consensus 557 ii~~g-l~De~qkVR~itAlalsalae 582 (1172)
T KOG0213|consen 557 IIEHG-LKDEQQKVRTITALALSALAE 582 (1172)
T ss_pred HHHHh-hcccchhhhhHHHHHHHHHHH
Confidence 77777 588888887665555555544
No 40
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.08 E-value=0.029 Score=65.41 Aligned_cols=136 Identities=11% Similarity=0.132 Sum_probs=70.5
Q ss_pred HhhhhcCCCCchhHHHHHHHHHHhcCCCChHHH--HHHHHHHhHcCCCChHHHHHHHHHhcCC--ChhhhHHHHHHHHhh
Q 008746 67 EMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL--LTINFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGL 142 (555)
Q Consensus 67 ~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~--l~in~l~kDL~~~n~~vr~lAL~~L~~i--~~~ei~~~l~~~i~~ 142 (555)
.|+..+..+...+|-=+-=.++...+.+|.++. .+--++..-+.|....||-.|+.-+|.. ..|+.++..+..|..
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~e 899 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIE 899 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHh
Confidence 334444555555555555555555555544321 2223344455556666666666666653 456666666666666
Q ss_pred ccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 008746 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (555)
Q Consensus 143 ~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~ 203 (555)
.+.|+.--|||.|+--+..+|...|+....++....+.+. .+|....|.--+...|..++
T Consensus 900 rIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrR-v~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 900 RILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRR-VNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred hcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH-hccchhHHHHHHHHHHHHHh
Confidence 6666666666666666666666666543223333333333 24444435555555555543
No 41
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.06 E-value=0.00075 Score=69.41 Aligned_cols=92 Identities=27% Similarity=0.222 Sum_probs=62.6
Q ss_pred HHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHH
Q 008746 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (555)
Q Consensus 101 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~ 180 (555)
....+.+.+.++++.+|..|...++.++..+.+ +.+.+.+.|.++.||..|+.+++++- + +...+.+.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av----~~l~~~l~d~~~~vr~~a~~aLg~~~--~------~~a~~~li 111 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSEEAV----PLLRELLSDEDPRVRDAAADALGELG--D------PEAVPPLV 111 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHH----HHHHHHhcCCCHHHHHHHHHHHHccC--C------hhHHHHHH
Confidence 456677777777777887777777777776644 44457777777788887777777663 1 33445566
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHh
Q 008746 181 HLMLNDPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 181 ~lll~d~d~~V~~~a~~~L~~i~~ 204 (555)
.++.+|.|..|+..|..+|..+..
T Consensus 112 ~~l~~d~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 112 ELLENDENEGVRAAAARALGKLGD 135 (335)
T ss_pred HHHHcCCcHhHHHHHHHHHHhcCc
Confidence 654347777777777777777643
No 42
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.99 E-value=0.00097 Score=69.89 Aligned_cols=249 Identities=17% Similarity=0.090 Sum_probs=147.6
Q ss_pred HHHhcCCChhhhHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHH
Q 008746 121 LRSLCSLRVANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSAL 199 (555)
Q Consensus 121 L~~L~~i~~~ei~~~l~~~i~~~l-~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L 199 (555)
|..|.-.+ ++..+ .+...+ .|.++.|+..|+.++.... .+..++.+... +.|.+++|+.++..+|
T Consensus 45 LdgL~~~G-~~a~~----~L~~aL~~d~~~ev~~~aa~al~~~~--------~~~~~~~L~~~-L~d~~~~vr~aaa~AL 110 (410)
T TIGR02270 45 VDGLVLAG-KAATE----LLVSALAEADEPGRVACAALALLAQE--------DALDLRSVLAV-LQAGPEGLCAGIQAAL 110 (410)
T ss_pred HHHHHHhh-HhHHH----HHHHHHhhCCChhHHHHHHHHHhccC--------ChHHHHHHHHH-hcCCCHHHHHHHHHHH
Confidence 45554444 33333 333555 4677777777766664331 12235667776 4777888888888888
Q ss_pred HHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHH
Q 008746 200 QEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVL 279 (555)
Q Consensus 200 ~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~ 279 (555)
.++... .....|+..+.+.+|+++..++..+...... -.+.+.+.|++.++.|.-
T Consensus 111 g~i~~~------------------~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-------~~~~L~~~L~d~d~~Vra 165 (410)
T TIGR02270 111 GWLGGR------------------QAEPWLEPLLAASEPPGRAIGLAALGAHRHD-------PGPALEAALTHEDALVRA 165 (410)
T ss_pred hcCCch------------------HHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------hHHHHHHHhcCCCHHHHH
Confidence 766321 1344555666777888887777777664322 124677788899999999
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCcHHHHHHHH
Q 008746 280 STIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKL 359 (555)
Q Consensus 280 eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~~~~~dd~~Ir~~aL 359 (555)
+|++++..+..... .+.|...+.+.++++|..|+..+..+-. +... ..+..|. .......+....
T Consensus 166 ~A~raLG~l~~~~a----------~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~-~~l~~~~--~~~g~~~~~~l~ 230 (410)
T TIGR02270 166 AALRALGELPRRLS----------ESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAW-GVCRRFQ--VLEGGPHRQRLL 230 (410)
T ss_pred HHHHHHHhhccccc----------hHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHH-HHHHHHH--hccCccHHHHHH
Confidence 99999988764321 1234445778899999999988865521 2221 1111111 122223343333
Q ss_pred HHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 008746 360 EMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDL 436 (555)
Q Consensus 360 ~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~~~~i~~ll~ll~~~~~~v~~e~i~~i~~i 436 (555)
.+..+.... .++.-|...+++. ..++.++.++|.++.- . .+.++++.+... .+..-+-..++.|
T Consensus 231 -~~lal~~~~---~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p--~---av~~L~~~l~d~--~~aR~A~eA~~~I 294 (410)
T TIGR02270 231 -VLLAVAGGP---DAQAWLRELLQAA--ATRREALRAVGLVGDV--E---AAPWCLEAMREP--PWARLAGEAFSLI 294 (410)
T ss_pred -HHHHhCCch---hHHHHHHHHhcCh--hhHHHHHHHHHHcCCc--c---hHHHHHHHhcCc--HHHHHHHHHHHHh
Confidence 344443222 5666666666653 3888999999877742 2 457777777653 3555555555555
No 43
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.0038 Score=66.66 Aligned_cols=338 Identities=15% Similarity=0.046 Sum_probs=192.2
Q ss_pred CCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhh-----hHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCC
Q 008746 93 VNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA 167 (555)
Q Consensus 93 ~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~e-----i~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p 167 (555)
+++.-..+..+.=..-......-+|..++.+...++..+ -.+.+...+..+..|.++.||+.|+-+++.+.. .-
T Consensus 151 ~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~ 229 (823)
T KOG2259|consen 151 EEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GF 229 (823)
T ss_pred chhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cc
Confidence 444444555555555555556667777777777775432 345556667788899999999999999998875 11
Q ss_pred CcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHH
Q 008746 168 PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLEL 247 (555)
Q Consensus 168 ~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~ 247 (555)
.+ -........+. +.|.+..|+.+|+.++.-.++..|.+..... ....+... .|.++|..+.+.+--.++..-+.
T Consensus 230 kL--~~~~Y~~A~~~-lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~-~e~kl~D~-aF~~vC~~v~D~sl~VRV~AaK~ 304 (823)
T KOG2259|consen 230 KL--SKACYSRAVKH-LSDDYEDVRKAAVQLVSVWGNRCPAPLERES-EEEKLKDA-AFSSVCRAVRDRSLSVRVEAAKA 304 (823)
T ss_pred cc--cHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhcCCCcccchh-hhhhhHHH-HHHHHHHHHhcCceeeeehHHHH
Confidence 11 12234556666 5899999999999999988877754322211 11222333 78899999988887778888888
Q ss_pred HHccCCCChhHHHHHHH-HHHHHhccCc--hHHHHHHHHHHHH---hcC---CcchhHHHH--------H-HHHHHHHHH
Q 008746 248 VAKYVPLDSNEIFDIMN-LLEDRLQHAN--GAVVLSTIKVFLH---LTL---SMTDVHQQV--------Y-ERIKAPLLT 309 (555)
Q Consensus 248 L~~~~~~~~~~~~~i~~-~l~~~L~s~~--~aV~~eai~~i~~---l~~---~~~~~~~~~--------l-~~i~~~L~~ 309 (555)
|+.+..-+ ..++. -|...+-++. -.-.-+.-+.... |.. ...+..++. + .-..+.+++
T Consensus 305 lG~~~~vS----ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~Vh 380 (823)
T KOG2259|consen 305 LGEFEQVS----EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVH 380 (823)
T ss_pred hchHHHhH----HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeee
Confidence 88775322 23332 2322221100 0001111122221 110 001111000 0 001122333
Q ss_pred HhcCCCchhHHHHHHHHHHHHhhCCccccccccee-eeccCCcHHHHHHHHHHHHHccCCCCHH-HHHHHHHHHhhcCCH
Q 008746 310 LVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF-YCQYNEPSYVKKLKLEMLTAVANESNTY-EIVTELCEYAANVDI 387 (555)
Q Consensus 310 ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f-~~~~~dd~~Ir~~aL~iL~~l~~~~N~~-~Iv~eL~~y~~~~d~ 387 (555)
=+.+.--++|-.|...+..++...|+.-..-+.-+ .-.+|+...+|.+++.-|..+.+--.+. +.++.+.+.+.+.+.
T Consensus 381 GlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~ 460 (823)
T KOG2259|consen 381 GLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSV 460 (823)
T ss_pred echHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCH
Confidence 24444457899999999999998887533322211 1236777899999999999886553332 355666667777777
Q ss_pred HHHHHHHHHHHHHhcccCcHH---HHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCC
Q 008746 388 PIARESIRAVGKIALQQYDVN---AIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQW 443 (555)
Q Consensus 388 ~~~~~~i~~i~~la~~~~~~~---~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~ 443 (555)
++|..+-..++. .++++.. -++.-+++-|..- +.-.++++..+..|-++++.+
T Consensus 461 dvRe~l~elL~~--~~~~d~~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~~l 516 (823)
T KOG2259|consen 461 DVREALRELLKN--ARVSDLECIDMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNHRRL 516 (823)
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccChhh
Confidence 777665554432 2455432 2333333333321 234456666666666665554
No 44
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.00096 Score=69.91 Aligned_cols=294 Identities=14% Similarity=0.132 Sum_probs=188.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCC----hhhhHHHHHHHHhhccCCCChHHHHHH
Q 008746 80 KKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR----VANLVEYLVGPLGLGLKDNNSYVRTVA 155 (555)
Q Consensus 80 Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~----~~ei~~~l~~~i~~~l~d~~~~VRk~A 155 (555)
+-++--+...+.++|++...-....+.--+.+.-+.+.-.|.|.++.+. .++..+..+..++..|+.++.-.|-.|
T Consensus 244 ~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA 323 (898)
T COG5240 244 GVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSA 323 (898)
T ss_pred heehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4445556667778888876666666666677777888888888888853 356677778888888999999999999
Q ss_pred HHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCC
Q 008746 156 VIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE 235 (555)
Q Consensus 156 ~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~ 235 (555)
...+-++..++|+.+ .-.-+.+..+ .+|.|..+..-|+..|..-+..+. .++ .+..+.+.+.+
T Consensus 324 ~Riln~lam~~P~kv--~vcN~evEsL-Isd~Nr~IstyAITtLLKTGt~e~-------idr-------Lv~~I~sfvhD 386 (898)
T COG5240 324 MRILNQLAMKYPQKV--SVCNKEVESL-ISDENRTISTYAITTLLKTGTEET-------IDR-------LVNLIPSFVHD 386 (898)
T ss_pred HHHHHHHHhhCCcee--eecChhHHHH-hhcccccchHHHHHHHHHcCchhh-------HHH-------HHHHHHHHHHh
Confidence 999999999999987 5566788887 699998887777777665432210 011 12222223445
Q ss_pred CChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCc-hHH---HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHh
Q 008746 236 FSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHAN-GAV---VLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLV 311 (555)
Q Consensus 236 ~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~-~aV---~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll 311 (555)
.+.-..+.+++.++.++..=|.....+++.+...|...+ --. ..+|+.-++...|. -++.++ .-|..|+
T Consensus 387 ~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~---skEraL----e~LC~fI 459 (898)
T COG5240 387 MSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPD---SKERAL----EVLCTFI 459 (898)
T ss_pred hccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCch---HHHHHH----HHHHHHH
Confidence 555555556666666554445666778888877665433 112 23454445544433 233333 3355666
Q ss_pred cCCCchhHHHHHHHHHHHHhhCCcc-----cccccceeeeccCCcHHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHh
Q 008746 312 SSGSPEQSYAVLSHLHILVMRAPFI-----FASDYKHFYCQYNEPSYVKKLKLEMLTAVA----NESNTYEIVTELCEYA 382 (555)
Q Consensus 312 ~~~~~~~ry~aL~~l~~l~~~~p~~-----~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~----~~~N~~~Iv~eL~~y~ 382 (555)
. |-+..-++++.+..+-..+|.. +..|+-.=..+.+ ..||..|+..|.+.+ +.---+.+..-|..++
T Consensus 460 E--Dcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN--~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRcl 535 (898)
T COG5240 460 E--DCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILEN--NIVRSAAVQALSKFALNISDVVSPQSVENALKRCL 535 (898)
T ss_pred h--hcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhh--hHHHHHHHHHHHHhccCccccccHHHHHHHHHHHh
Confidence 4 3566677788888777776654 3333311012222 359999999996643 2223345666678899
Q ss_pred hcCCHHHHHHHHHHHHHHh
Q 008746 383 ANVDIPIARESIRAVGKIA 401 (555)
Q Consensus 383 ~~~d~~~~~~~i~~i~~la 401 (555)
.+.|+++|..+...+..+-
T Consensus 536 nD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 536 NDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hcccHHHHHHHHHHHHhhh
Confidence 9999999977665554433
No 45
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.94 E-value=0.0048 Score=63.42 Aligned_cols=197 Identities=22% Similarity=0.206 Sum_probs=124.2
Q ss_pred hHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhc
Q 008746 64 VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLG 143 (555)
Q Consensus 64 lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~ 143 (555)
....+++.+.+++..+|.-+..++..+. . .-++..+.+-+.+.++.+|..|..+||.+++++..+.++..+..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~---~---~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~- 116 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG---S---EEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN- 116 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc---h---HHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc-
Confidence 3556678888888888888887755442 1 24568899999999999999999999999999987776654444
Q ss_pred cCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccH
Q 008746 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK 223 (555)
Q Consensus 144 l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~ 223 (555)
|.+.+||..|+.++.++.. +..+..+... ++|.+..+ ++ ..+ .+.
T Consensus 117 --d~~~~vR~~aa~aL~~~~~--------~~a~~~l~~~-l~~~~~~~--a~-~~~------~~~--------------- 161 (335)
T COG1413 117 --DENEGVRAAAARALGKLGD--------ERALDPLLEA-LQDEDSGS--AA-AAL------DAA--------------- 161 (335)
T ss_pred --CCcHhHHHHHHHHHHhcCc--------hhhhHHHHHH-hccchhhh--hh-hhc------cch---------------
Confidence 8999999999999999863 2334556665 47766555 11 111 000
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHH
Q 008746 224 PVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERI 303 (555)
Q Consensus 224 ~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i 303 (555)
. -+.+..+...|..+. ++. ....+...+.+...-|...|+..+..+...... +
T Consensus 162 --~-----------~~~r~~a~~~l~~~~--~~~----~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~--------~ 214 (335)
T COG1413 162 --L-----------LDVRAAAAEALGELG--DPE----AIPLLIELLEDEDADVRRAAASALGQLGSENVE--------A 214 (335)
T ss_pred --H-----------HHHHHHHHHHHHHcC--Chh----hhHHHHHHHhCchHHHHHHHHHHHHHhhcchhh--------H
Confidence 0 022333333444333 111 233455566666666777777777665543211 1
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHH
Q 008746 304 KAPLLTLVSSGSPEQSYAVLSHLHIL 329 (555)
Q Consensus 304 ~~~L~~ll~~~~~~~ry~aL~~l~~l 329 (555)
...+...+++.+.++|..++..+..+
T Consensus 215 ~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 215 ADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 22334456666677777777665533
No 46
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.93 E-value=0.00061 Score=71.38 Aligned_cols=120 Identities=17% Similarity=0.027 Sum_probs=80.6
Q ss_pred HHHhhhhcC-CCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhc
Q 008746 65 FGEMVMCSA-TSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLG 143 (555)
Q Consensus 65 f~~vi~~~~-s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~ 143 (555)
....+..+. .++.++...+-+++. ...++. ++..+.+-|.++++.+|..|.++||.++.+...+. +..+
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~~----~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~----L~~~ 125 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALL--AQEDAL----DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW----LEPL 125 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHh--ccCChH----HHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH----HHHH
Confidence 555566664 444544443222222 122233 36888888889999899999999999988886544 4577
Q ss_pred cCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 008746 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 144 l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~ 204 (555)
+.|++|.||..++-++.. .. .+-.+.+..+ ++|.|+.|+.+|+.++..+..
T Consensus 126 L~~~~p~vR~aal~al~~-r~--------~~~~~~L~~~-L~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 126 LAASEPPGRAIGLAALGA-HR--------HDPGPALEAA-LTHEDALVRAAALRALGELPR 176 (410)
T ss_pred hcCCChHHHHHHHHHHHh-hc--------cChHHHHHHH-hcCCCHHHHHHHHHHHHhhcc
Confidence 788899999877744443 22 2234667777 588899999999888888754
No 47
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0021 Score=63.99 Aligned_cols=380 Identities=15% Similarity=0.110 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHHHhcCCCcchhHHHhhh----hcCCCCchhHHHHHHHHHHhcCC-CChHHHHHHHHHHhHcCCCChHHH
Q 008746 43 SKRELFKKVISYMTIGIDVSAVFGEMVM----CSATSDIVLKKMCYLYVGNYAKV-NPDLALLTINFLQRDCKDEDPMIR 117 (555)
Q Consensus 43 ~k~~~l~kli~~~~~G~d~s~lf~~vi~----~~~s~~~~~Krl~yl~l~~~~~~-~~e~~~l~in~l~kDL~~~n~~vr 117 (555)
.-++++.-++...-....++++-..=++ +--|++....|-.|++....-.. --.+..-+.-.++--++|+++.++
T Consensus 23 ~erEav~~ll~~lEd~~~i~fyS~~plraltvL~ySDnlnlqrsaalafAeitek~vr~Vsres~epvl~llqs~d~~Iq 102 (550)
T KOG4224|consen 23 PEREAVADLLNRLEDRNAISFYSASPLRALTVLKYSDNLNLQRSAALAFAEITEKGVRRVSRESNEPVLALLQSCDKCIQ 102 (550)
T ss_pred hhHHHHHHHHHhhcccccccccCCCccchheeeeeccccccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhCcchhhh
Confidence 3455554444433322344543333233 23477777888888877654321 122233345677788899999999
Q ss_pred HHHHHHhcCCChh----hhH---HHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc--cCCCchHHHHHHHhcCCC
Q 008746 118 GLALRSLCSLRVA----NLV---EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC--IDADFPPTLKHLMLNDPD 188 (555)
Q Consensus 118 ~lAL~~L~~i~~~----ei~---~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~--~~~~~~~~l~~lll~d~d 188 (555)
+.|-.++|++... .++ -.+.+-+.+.+ .++..||+.|+-|+..+...+.... -.......+.++ .+.+|
T Consensus 103 ~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmm-td~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrL-akskd 180 (550)
T KOG4224|consen 103 CAAGEALGNLAVNMENKGLIVSLLGLDLLILQMM-TDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRL-AKSKD 180 (550)
T ss_pred hhhhhhhccceeccCCceEEEeccChHHHHHHhc-CCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhh-cccch
Confidence 9999999987331 111 11223344444 4566899999999998876544332 124455666675 78899
Q ss_pred hHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhH------HHHH
Q 008746 189 PQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE------IFDI 262 (555)
Q Consensus 189 ~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~------~~~i 262 (555)
-.|+-+|..+|..+..... .+..++|...+.-|...++..++-.|-..-..+....-+.... -.++
T Consensus 181 irvqrnatgaLlnmThs~E--------nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~l 252 (550)
T KOG4224|consen 181 IRVQRNATGALLNMTHSRE--------NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKL 252 (550)
T ss_pred hhHHHHHHHHHHHhhhhhh--------hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccch
Confidence 9999999988887643211 2445566555666777788888889988888887765331110 1247
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHHHHH-HHHhhCCcc---c
Q 008746 263 MNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLH-ILVMRAPFI---F 337 (555)
Q Consensus 263 ~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~l~-~l~~~~p~~---~ 337 (555)
++.+..++.+.++-|...|..++..+... ..++..+.. --.+.++.++.+ |-...++-...+ +.+..+|.- +
T Consensus 253 v~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs--~~~plilasVaCIrnisihplNe~lI 329 (550)
T KOG4224|consen 253 VPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQS--PMGPLILASVACIRNISIHPLNEVLI 329 (550)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhC--cchhHHHHHHHHHhhcccccCcccce
Confidence 78888899999999999998888777543 223333322 112345677754 444444333333 234455531 1
Q ss_pred c--ccccee--eeccCCcHHHHHHHHHHHHHccC--CCCHHHH-----HHHHHHHhhcCCHHHHHHHHHHHHHHhcccCc
Q 008746 338 A--SDYKHF--YCQYNEPSYVKKLKLEMLTAVAN--ESNTYEI-----VTELCEYAANVDIPIARESIRAVGKIALQQYD 406 (555)
Q Consensus 338 ~--~~~~~f--~~~~~dd~~Ir~~aL~iL~~l~~--~~N~~~I-----v~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~ 406 (555)
. -+++.+ .....|.+.|+..|.+.|..++. +.|+..| ++.+++.+.+...+|+.+.--.|+.++....+
T Consensus 330 ~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~ 409 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND 409 (550)
T ss_pred ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence 1 112211 12345667799999999999975 5677776 67788899999999999999999999876543
Q ss_pred HH-----HHHHHHHHHhhcccchhHHHHHHHHHH
Q 008746 407 VN-----AIVDRLLQFLEMEKDYVTAEALVLVKD 435 (555)
Q Consensus 407 ~~-----~~i~~ll~ll~~~~~~v~~e~i~~i~~ 435 (555)
.. .+++.++......+..+...+..++.+
T Consensus 410 k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~N 443 (550)
T KOG4224|consen 410 KEALLDSGIIPILIPWTGSESEEVRGNAAAALIN 443 (550)
T ss_pred HHHHhhcCCcceeecccCccchhhcccHHHHHHh
Confidence 21 245556655554444444444444333
No 48
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.88 E-value=0.003 Score=70.23 Aligned_cols=347 Identities=15% Similarity=0.174 Sum_probs=202.8
Q ss_pred CCChHHHHHHHHHhcCCChhh------hHHHHHHHHhhccCCCChHHHHHHHHHHHHHh--hhCCCcccCCCchHHHHHH
Q 008746 111 DEDPMIRGLALRSLCSLRVAN------LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLY--HISAPTCIDADFPPTLKHL 182 (555)
Q Consensus 111 ~~n~~vr~lAL~~L~~i~~~e------i~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~--~~~p~~~~~~~~~~~l~~l 182 (555)
..+...| .|++.|.++.... ....+++.+.++|...+..+.-.++..+-|+. ..+.+.+...+.++.|.++
T Consensus 261 kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 261 KQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence 3445555 6677788774311 23445667778888888888888888877763 3344444457899999998
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhH-H--
Q 008746 183 MLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE-I-- 259 (555)
Q Consensus 183 ll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~-~-- 259 (555)
+..++..++..++.+|..++-+.. .+. .++....+++|...+.+. -.+...+.+|..+...+... .
T Consensus 340 -l~s~~~~l~~~aLrlL~NLSfd~~-----~R~---~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 340 -LPSENEDLVNVALRLLFNLSFDPE-----LRS---QMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred -hcCCCHHHHHHHHHHHHHhCcCHH-----HHH---HHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHh
Confidence 577788899999999999865321 112 222222556666666543 24455778888776543211 1
Q ss_pred -HHHHHHHHH-HhccCchHHHHHHHHHHHHhcCCcchhHHHHHH--HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCc
Q 008746 260 -FDIMNLLED-RLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF 335 (555)
Q Consensus 260 -~~i~~~l~~-~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~--~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~ 335 (555)
.+.++.+.. ++.+.++.|-.+++.+++.++.....- +.+++ .+...+.+.+..+| -+.++.+.-+.++.|.
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna-qlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~ 483 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNA-QLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGP 483 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH-HHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCch
Confidence 123444433 445566667777777777776543321 11111 12222223333333 2233444344433322
Q ss_pred ---cccccccee--eeccCCcHHHHHHHHHHHHHccCC-CCHHHHHHH--HHHHhhc------CCHHHHHHHHHHHHHHh
Q 008746 336 ---IFASDYKHF--YCQYNEPSYVKKLKLEMLTAVANE-SNTYEIVTE--LCEYAAN------VDIPIARESIRAVGKIA 401 (555)
Q Consensus 336 ---~~~~~~~~f--~~~~~dd~~Ir~~aL~iL~~l~~~-~N~~~Iv~e--L~~y~~~------~d~~~~~~~i~~i~~la 401 (555)
.|.+++..+ .+...++.......+-+|..+..+ .++..++++ |..|+.+ .++++.-++|..+|.++
T Consensus 484 ~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 484 LKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA 563 (708)
T ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 344555433 244556778888888888888744 478888875 4555543 35689999999999888
Q ss_pred cccCcH------HHHHHHHHHHhhccc--chhHHHHHHHHHHHHHhCCCCcchH------HHHHhhhcccCCCchHHHHH
Q 008746 402 LQQYDV------NAIVDRLLQFLEMEK--DYVTAEALVLVKDLLRKYPQWSHDC------IAVVGSISSQNVQEPKAKAA 467 (555)
Q Consensus 402 ~~~~~~------~~~i~~ll~ll~~~~--~~v~~e~i~~i~~ii~~~~~~~~~~------~~~l~~l~~~~~~~~~~~~~ 467 (555)
. .+.+ ..+++.++.+|.... +.++-+++.++.+++.. ++.++.. ...+-.++ ...++++++.
T Consensus 564 ~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~--~d~N~~ir~~ 639 (708)
T PF05804_consen 564 S-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLM--HDKNAEIRKV 639 (708)
T ss_pred C-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHh--cCCCHHHHHH
Confidence 4 3332 136899999997653 56666666677666654 3322221 11222222 2345666654
Q ss_pred ---HHHHHhccccC
Q 008746 468 ---LIWMLGEYSQD 478 (555)
Q Consensus 468 ---~~wiiGEy~~~ 478 (555)
++-+++||...
T Consensus 640 ~d~~Ldii~e~d~~ 653 (708)
T PF05804_consen 640 CDNALDIIAEYDEE 653 (708)
T ss_pred HHHHHHHHHHhCHH
Confidence 36677776653
No 49
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0013 Score=71.60 Aligned_cols=428 Identities=14% Similarity=0.111 Sum_probs=235.8
Q ss_pred HHHHHHHHhcCCCcchhHHH------hhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHH
Q 008746 48 FKKVISYMTIGIDVSAVFGE------MVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLAL 121 (555)
Q Consensus 48 l~kli~~~~~G~d~s~lf~~------vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL 121 (555)
+||+.|+++..|-..+-+.. +++=..+++..+|.++--....+ ..+.+.=-.++.+.+-++|.+|++|..|.
T Consensus 65 lKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l--~v~~i~ey~~~Pl~~~l~d~~~yvRktaa 142 (734)
T KOG1061|consen 65 LKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL--RVDKITEYLCDPLLKCLKDDDPYVRKTAA 142 (734)
T ss_pred HHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE--eehHHHHHHHHHHHHhccCCChhHHHHHH
Confidence 78888888766544332221 23344567777776665554444 23445446789999999999999999998
Q ss_pred HHhcCCCh--hhhH--HHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc---cCCCchHHHHHHHhcCCChHHHHH
Q 008746 122 RSLCSLRV--ANLV--EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVAN 194 (555)
Q Consensus 122 ~~L~~i~~--~ei~--~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~---~~~~~~~~l~~lll~d~d~~V~~~ 194 (555)
-+..++.. +++. ..+.+.++.++.|++|.|=-.|+.|+.-++..+|+.- ..+.++..+... +++-+..-+..
T Consensus 143 ~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~a-l~ec~EW~qi~ 221 (734)
T KOG1061|consen 143 VCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEA-LNECTEWGQIF 221 (734)
T ss_pred HHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHH-HHHhhhhhHHH
Confidence 88888744 4444 4578888899999999999999999999999888521 112344444444 34444444444
Q ss_pred HHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhH----HHHHHHHHHHHh
Q 008746 195 CLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE----IFDIMNLLEDRL 270 (555)
Q Consensus 195 a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~----~~~i~~~l~~~L 270 (555)
.+..+.+-.+.+.. + ++ ....++...+...++-+++..++++....+.-+.- ..++.+.+..++
T Consensus 222 IL~~l~~y~p~d~~---e--------a~-~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tll 289 (734)
T KOG1061|consen 222 ILDCLAEYVPKDSR---E--------AE-DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLL 289 (734)
T ss_pred HHHHHHhcCCCCch---h--------HH-HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeee
Confidence 44444443332211 0 00 13455555566667766666666665544322221 122223333344
Q ss_pred ccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHhhC--Ccccccccceeeec
Q 008746 271 QHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSS-GSPEQSYAVLSHLHILVMRA--PFIFASDYKHFYCQ 347 (555)
Q Consensus 271 ~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~-~~~~~ry~aL~~l~~l~~~~--p~~~~~~~~~f~~~ 347 (555)
.+.. .+-|-|.+-+..+-...+.+ +. ......|..- ...-++-.-|+.+..++... +++. .+++. ++
T Consensus 290 s~~~-e~qyvaLrNi~lil~~~p~~----~~--~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl-~El~e-Ya- 359 (734)
T KOG1061|consen 290 SSES-EIQYVALRNINLILQKRPEI----LK--VEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVL-AELKE-YA- 359 (734)
T ss_pred cccc-hhhHHHHhhHHHHHHhChHH----HH--hHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHH-HHHHH-hh-
Confidence 4444 55555555443221111111 10 0111112221 23335666666666554221 1111 11111 11
Q ss_pred cCCcHHHHHHHHHHHHHccCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhhcccchhH
Q 008746 348 YNEPSYVKKLKLEMLTAVANE-SNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVT 426 (555)
Q Consensus 348 ~~dd~~Ir~~aL~iL~~l~~~-~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~~~~i~~ll~ll~~~~~~v~ 426 (555)
.+-|...-++++..+..++-. .-....+..|++.++..-..++.+++..|..+.-+||+.. +.+...+...-+.+.
T Consensus 360 tevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~---~~vv~~l~~~~~sl~ 436 (734)
T KOG1061|consen 360 TEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY---ESVVAILCENLDSLQ 436 (734)
T ss_pred hhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch---hhhhhhhcccccccC
Confidence 345566788999999988632 2236688888888876556677899999999999999842 222332222211221
Q ss_pred -HHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCCc-h----HHHHHHHHHHhccccCCCChHHHHHHHHHhhh-cCCcH
Q 008746 427 -AEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQE-P----KAKAALIWMLGEYSQDMQDAPYILESLTENWE-EEPSA 499 (555)
Q Consensus 427 -~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~~-~----~~~~~~~wiiGEy~~~~~~~~~~l~~l~~~~~-~e~~~ 499 (555)
+|+=..+.=|+.+|++.-+++.+.+..++...-++ . ..+.+++-+.+-.+. ...+++..++..-. +++.+
T Consensus 437 epeak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~---~tq~~l~~vL~~~~~d~~~~ 513 (734)
T KOG1061|consen 437 EPEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPT---ETQELLQGVLPLATADTDNP 513 (734)
T ss_pred ChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCc---cHHHHHHHHHhhhhccccCh
Confidence 12222333367777776666666777665221112 2 234555666654443 45566555544333 33335
Q ss_pred HHHHHHH
Q 008746 500 EVRLHLL 506 (555)
Q Consensus 500 ~vr~~~L 506 (555)
++|-.++
T Consensus 514 dlrDr~l 520 (734)
T KOG1061|consen 514 DLRDRGL 520 (734)
T ss_pred hhhhhHH
Confidence 6666655
No 50
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0053 Score=66.59 Aligned_cols=432 Identities=14% Similarity=0.148 Sum_probs=233.5
Q ss_pred hHHHhh-hhcCCCCchhHHHHHHHHHHhcCCCCh-------HHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhH--
Q 008746 64 VFGEMV-MCSATSDIVLKKMCYLYVGNYAKVNPD-------LALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLV-- 133 (555)
Q Consensus 64 lf~~vi-~~~~s~~~~~Krl~yl~l~~~~~~~~e-------~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~-- 133 (555)
++++|+ +..+++|.+++..++.-+..+....-+ -++. +--...+.++|+.|-..|+.+=|+++.+|+=
T Consensus 217 ~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alf--aitl~amks~~deValQaiEFWsticeEEiD~~ 294 (859)
T KOG1241|consen 217 YIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALF--AITLAAMKSDNDEVALQAIEFWSTICEEEIDLA 294 (859)
T ss_pred eeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 577774 788899988776554433332211111 1111 2233456799999999999999988665432
Q ss_pred -----------------------HHHHHHHhhccCC-------CChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHH
Q 008746 134 -----------------------EYLVGPLGLGLKD-------NNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLM 183 (555)
Q Consensus 134 -----------------------~~l~~~i~~~l~d-------~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~ll 183 (555)
+.+.|.+.++|.. .+-.+-|+|..|+.-+.+...+.+ .+...+.+++-
T Consensus 295 ~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I-v~~Vl~Fiee~- 372 (859)
T KOG1241|consen 295 IEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI-VPHVLPFIEEN- 372 (859)
T ss_pred HHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccc-hhhhHHHHHHh-
Confidence 2677777777643 234678888888877777666654 35666777765
Q ss_pred hcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCC-------CChhHHHHHHHHHHccCCCCh
Q 008746 184 LNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE-------FSEWAQCLVLELVAKYVPLDS 256 (555)
Q Consensus 184 l~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~-------~~pw~q~~iL~~L~~~~~~~~ 256 (555)
...+|..=+-+|+.++..+... | |++...-+-.+.+..+++...+ ...|.--++.+.+..... +.
T Consensus 373 i~~pdwr~reaavmAFGSIl~g-p------~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~-n~ 444 (859)
T KOG1241|consen 373 IQNPDWRNREAAVMAFGSILEG-P------EPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAII-NQ 444 (859)
T ss_pred cCCcchhhhhHHHHHHHhhhcC-C------chhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcc-cH
Confidence 4778998899999999988642 2 2222211112244455554444 456666677776654331 11
Q ss_pred hHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-------CCc--chhHHHHHHHHHHHHHHHhcC---CCchhHHHHHH
Q 008746 257 NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT-------LSM--TDVHQQVYERIKAPLLTLVSS---GSPEQSYAVLS 324 (555)
Q Consensus 257 ~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~-------~~~--~~~~~~~l~~i~~~L~~ll~~---~~~~~ry~aL~ 324 (555)
......+..+..-|+ ..|-|.-.+..++..+. .+. .+.....+.-+++.|+.-... .+.|+|-.|.+
T Consensus 445 ~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYe 523 (859)
T KOG1241|consen 445 ELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYE 523 (859)
T ss_pred hhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHH
Confidence 222334444444443 23334444444443332 111 011112234444545443332 56899999999
Q ss_pred HHHHHHhhCCcccccccceeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHhcc
Q 008746 325 HLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV-DIPIARESIRAVGKIALQ 403 (555)
Q Consensus 325 ~l~~l~~~~p~~~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~-d~~~~~~~i~~i~~la~~ 403 (555)
+|..++...|+.+.+- +....+-++.++- ..+. .+.+.+.... -.++...+-..++.+-.|
T Consensus 524 ALmElIk~st~~vy~~-------------v~~~~l~il~kl~--q~i~---~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk 585 (859)
T KOG1241|consen 524 ALMELIKNSTDDVYPM-------------VQKLTLVILEKLD--QTIS---SQILSLADRAQLNELQSLLCNTLQSIIRK 585 (859)
T ss_pred HHHHHHHcCcHHHHHH-------------HHHHHHHHHHHHH--HHHH---HHhccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998876644332 3333344444331 1111 1111111000 012333333334333333
Q ss_pred c----CcH-HHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHhCCCCcchHHHHHhhhc---ccCCCchHHHHHHHHHHhc
Q 008746 404 Q----YDV-NAIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQWSHDCIAVVGSIS---SQNVQEPKAKAALIWMLGE 474 (555)
Q Consensus 404 ~----~~~-~~~i~~ll~ll~~~~~-~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~---~~~~~~~~~~~~~~wiiGE 474 (555)
. +.. .-.+..+++++..+++ .+.+|+.-.+-.++..-..........+..++ ..+.++..+..+++-++|.
T Consensus 586 ~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgd 665 (859)
T KOG1241|consen 586 VGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGD 665 (859)
T ss_pred ccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3 332 3466677777877443 45556666665555442221111121222111 1355677788888888887
Q ss_pred cccCCC-----ChHHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Q 008746 475 YSQDMQ-----DAPYILESLTENWEEE--PSAEVRLHLLTAVMKCFFKRPPETQKVLGAA 527 (555)
Q Consensus 475 y~~~~~-----~~~~~l~~l~~~~~~e--~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~v 527 (555)
-+.... -+.+++..|+++..++ + .+||=.+|+.++-+..-.....++-+..+
T Consensus 666 l~raL~~~i~py~d~~mt~Lvq~Lss~~~h-R~vKP~IlS~FgDIAlaIg~~F~~Yl~~v 724 (859)
T KOG1241|consen 666 LARALEDDILPYCDELMTVLVQCLSSPNLH-RNVKPAILSVFGDIALAIGADFEPYLEMV 724 (859)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHccCcccc-ccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 765542 2567777888777554 3 67888999988888765433334444333
No 51
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.031 Score=59.79 Aligned_cols=299 Identities=13% Similarity=0.090 Sum_probs=165.3
Q ss_pred hcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCC---hHHHHHHHHHHhHcCCCChHHHHH----H----HHHh
Q 008746 56 TIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNP---DLALLTINFLQRDCKDEDPMIRGL----A----LRSL 124 (555)
Q Consensus 56 ~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~---e~~~l~in~l~kDL~~~n~~vr~l----A----L~~L 124 (555)
..|++.+.......+++.+.+...++=+=..+..+.+... +.-...+..+.+..+|.++..+.. | -..|
T Consensus 127 ~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L 206 (569)
T KOG1242|consen 127 SKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL 206 (569)
T ss_pred hhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc
Confidence 3567777667777788888877765443333333333221 111244566777777766555442 2 2334
Q ss_pred cCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhh-CCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 008746 125 CSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (555)
Q Consensus 125 ~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~-~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~ 203 (555)
|....|.+.+ +.|.|..+..|..+.||.+|..|.-.+.+. ++..+ +.+.+.+..-+..+ ...-..+++.++..+.
T Consensus 207 g~~~EPyiv~-~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV--K~llpsll~~l~~~-kWrtK~aslellg~m~ 282 (569)
T KOG1242|consen 207 GPPFEPYIVP-ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV--KLLLPSLLGSLLEA-KWRTKMASLELLGAMA 282 (569)
T ss_pred CCCCCchHHh-hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh--hHhhhhhHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 4444455554 568888889999999999888887776653 34444 55555444443333 4555566666666555
Q ss_pred hhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCC-ChhHHHHHHHHHHHHhccCchHHHHHHH
Q 008746 204 SLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-DSNEIFDIMNLLEDRLQHANGAVVLSTI 282 (555)
Q Consensus 204 ~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~-~~~~~~~i~~~l~~~L~s~~~aV~~eai 282 (555)
...|. -..+.-+.+++.+.+.+.+..|-.|-.-.+.+.+++.- +..+...+++.+...+.+.+.. +-+|+
T Consensus 283 ~~ap~--------qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~-~~e~~ 353 (569)
T KOG1242|consen 283 DCAPK--------QLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCY-TPECL 353 (569)
T ss_pred HhchH--------HHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccc-hHHHH
Confidence 44332 12222234666777778888888888877777777522 2234566666666666665532 23444
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCcHHHHHHHHHHH
Q 008746 283 KVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEML 362 (555)
Q Consensus 283 ~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~~~~~dd~~Ir~~aL~iL 362 (555)
..++.-.- -..+....+..+++.|.+=++ +.+..++|.+..+.
T Consensus 354 ~~L~~ttF-V~~V~~psLalmvpiL~R~l~------------------------------------eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 354 DSLGATTF-VAEVDAPSLALMVPILKRGLA------------------------------------ERSTSIKRKTAIII 396 (569)
T ss_pred Hhhcceee-eeeecchhHHHHHHHHHHHHh------------------------------------hccchhhhhHHHHH
Confidence 44432110 000100112222332222222 22334555555554
Q ss_pred HHcc----CCCCHHHH----HHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 008746 363 TAVA----NESNTYEI----VTELCEYAANVDIPIARESIRAVGKIALQQ 404 (555)
Q Consensus 363 ~~l~----~~~N~~~I----v~eL~~y~~~~d~~~~~~~i~~i~~la~~~ 404 (555)
-.|| ++..+... ++.|..-+.+.+|+.|..+-+++|.+-++.
T Consensus 397 dNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERL 446 (569)
T ss_pred HHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 4443 33344444 444455556678999998888887766543
No 52
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.15 Score=56.92 Aligned_cols=170 Identities=11% Similarity=0.065 Sum_probs=85.6
Q ss_pred cCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhc
Q 008746 233 IKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVS 312 (555)
Q Consensus 233 l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~ 312 (555)
+.+++|..|...|+++.... .++-...+++.+...+.+.++-|+..|+-++.++..-.++...+. + ....+..++.
T Consensus 101 l~d~N~~iR~~AlR~ls~l~--~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~-g-~~~~l~~l~~ 176 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLR--VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHEL-G-LIDILKELVA 176 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcc-c-HHHHHHHHhh
Confidence 44555555555555555543 334445566667777777777777777777766553332221110 0 1122334455
Q ss_pred CCCchhHHHHHHHHHHHHhhCC----cccccccceeeeccCC--cHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHhhc
Q 008746 313 SGSPEQSYAVLSHLHILVMRAP----FIFASDYKHFYCQYNE--PSYVKKLKLEMLTAVANE--SNTYEIVTELCEYAAN 384 (555)
Q Consensus 313 ~~~~~~ry~aL~~l~~l~~~~p----~~~~~~~~~f~~~~~d--d~~Ir~~aL~iL~~l~~~--~N~~~Iv~eL~~y~~~ 384 (555)
+++|.+.-.|+-.+..+....- ..+..++..+...... ....+...++.|..-... +........+--+...
T Consensus 177 D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~ 256 (757)
T COG5096 177 DSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQH 256 (757)
T ss_pred CCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhh
Confidence 6777777776666654432200 0111222222222222 255666666666654322 2222222223345555
Q ss_pred CCHHHHHHHHHHHHHHhcccCc
Q 008746 385 VDIPIARESIRAVGKIALQQYD 406 (555)
Q Consensus 385 ~d~~~~~~~i~~i~~la~~~~~ 406 (555)
.++++..-++..|-++....+.
T Consensus 257 ~n~~vl~~av~~i~~l~~~~~~ 278 (757)
T COG5096 257 NNAEVLLIAVKVILRLLVFLPS 278 (757)
T ss_pred CcHHHHHHHHHHHHHHhhhhcc
Confidence 6777777777777777766554
No 53
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.61 E-value=0.00042 Score=67.09 Aligned_cols=183 Identities=19% Similarity=0.173 Sum_probs=106.3
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcC--CCcchhHHHh--------hhhcCCCCchhHHHHHHHHHHh
Q 008746 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIG--IDVSAVFGEM--------VMCSATSDIVLKKMCYLYVGNY 90 (555)
Q Consensus 21 e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G--~d~s~lf~~v--------i~~~~s~~~~~Krl~yl~l~~~ 90 (555)
+..++.+.|++-..+ .+=++|.+++.++-.+...| .+...-|... ++.+.+....+=+-+...+..+
T Consensus 4 ~~~~~~~~l~~~~~~---~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l 80 (228)
T PF12348_consen 4 EFEEILAALEKKESE---SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDL 80 (228)
T ss_dssp --GGS-TTHHHHHT----SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHH
T ss_pred hHHHHHHHHhccCCc---cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 445555666331111 34567788898888877766 1222222222 3355555555556666655554
Q ss_pred cCC-CC---hHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChh-hhHHH-HHHHHhhccCCCChHHHHHHHHHHHHHhh
Q 008746 91 AKV-NP---DLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVA-NLVEY-LVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (555)
Q Consensus 91 ~~~-~~---e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-ei~~~-l~~~i~~~l~d~~~~VRk~A~lal~kl~~ 164 (555)
+.. .. ...-..++.+.+-+.+++..++..|-.+|..+... ...+. +.+.+..+.+|++|.||..++.++..+..
T Consensus 81 ~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 81 ARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp HHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHT
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 422 11 12346678999999999999999888777765221 11223 36777888999999999999999999998
Q ss_pred hCC---CcccC----CCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 008746 165 ISA---PTCID----ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 165 ~~p---~~~~~----~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~ 207 (555)
..| ..+.. +.+.+.+..+ ++|+|+.|+.+|-.++..+.+.-|
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~-l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKL-LSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHH-HTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HccchHhhhcccchHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHCC
Confidence 887 22211 2366777777 699999999999999988866433
No 54
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.12 Score=55.62 Aligned_cols=360 Identities=13% Similarity=0.057 Sum_probs=206.4
Q ss_pred CCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHH-HhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccH
Q 008746 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL-MLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK 223 (555)
Q Consensus 145 ~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~l-ll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~ 223 (555)
.|+.+.+|+|-+.-...+ ..+++-. .++.+...-.+ +-.+.+..|.+.....+..+...-+... ....+++.
T Consensus 89 fDs~~s~~~K~~~l~~~l-~~~~~~~-s~d~I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~-----~~i~l~~~ 161 (823)
T KOG2259|consen 89 FDSDESSRKKLAILLGIL-EADFENG-STDAISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEED-----IYILLLHG 161 (823)
T ss_pred ccccchhhhHHHHHhhHh-hhhhccC-chhHHHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchh-----hHHHHHhh
Confidence 578888888776666655 2233322 12322222222 2457788888888777777654332110 01111211
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHH
Q 008746 224 PVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERI 303 (555)
Q Consensus 224 ~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i 303 (555)
....-.......+--.+.-..-.|+.....-+.+.......+..+..+.++.|.-.|+..++.+.. ...+...+++++
T Consensus 162 -~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~Y~~A 239 (823)
T KOG2259|consen 162 -VAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKACYSRA 239 (823)
T ss_pred -hHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cccccHHHHHHH
Confidence 000011112223333344444444444433344555666667778888899999999999998876 333444555554
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcc---cccccc----ee--ee--ccCCcHHHHHHHHHHHHHccCCCCHH
Q 008746 304 KAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI---FASDYK----HF--YC--QYNEPSYVKKLKLEMLTAVANESNTY 372 (555)
Q Consensus 304 ~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~---~~~~~~----~f--~~--~~~dd~~Ir~~aL~iL~~l~~~~N~~ 372 (555)
+ .++++.+..+|-.|++.+.....++|.- .....+ .| .| ..|-...||-.|-..|..+.+- -+
T Consensus 240 ~----~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v--Se 313 (823)
T KOG2259|consen 240 V----KHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV--SE 313 (823)
T ss_pred H----HHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh--HH
Confidence 4 4577888889999999998888888632 122211 22 13 3466677888888877776322 22
Q ss_pred HHHHHHHH--------------------------------------------------------HhhcCC---HHHHHHH
Q 008746 373 EIVTELCE--------------------------------------------------------YAANVD---IPIARES 393 (555)
Q Consensus 373 ~Iv~eL~~--------------------------------------------------------y~~~~d---~~~~~~~ 393 (555)
+++.+.+. |+.-.. .|+|+.+
T Consensus 314 e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AA 393 (823)
T KOG2259|consen 314 EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAA 393 (823)
T ss_pred HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHH
Confidence 33332211 111112 2467899
Q ss_pred HHHHHHHhcccCcH-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCCchHHHHHHHHHH
Q 008746 394 IRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWML 472 (555)
Q Consensus 394 i~~i~~la~~~~~~-~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wii 472 (555)
+..++.+|..-|+. ...++++.+.+...-..+.-.++..++.|... -.++++.+..+...+ ...++++|.++--++
T Consensus 394 V~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-l~i~eeql~~il~~L--~D~s~dvRe~l~elL 470 (823)
T KOG2259|consen 394 VASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH-LAIREEQLRQILESL--EDRSVDVREALRELL 470 (823)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-heecHHHHHHHHHHH--HhcCHHHHHHHHHHH
Confidence 99999999988885 46899999999876666777778877777654 444555444444333 234678888887777
Q ss_pred hccccCCCC--hHH-HHHHHH---HhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 008746 473 GEYSQDMQD--APY-ILESLT---ENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALA 529 (555)
Q Consensus 473 GEy~~~~~~--~~~-~l~~l~---~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~ 529 (555)
|- ...++ +.+ ++..+. ..|.++. -.++...+++.-+++.........++.
T Consensus 471 ~~--~~~~d~~~i~m~v~~lL~~L~kyPqDr-----d~i~~cm~~iGqnH~~lv~s~m~rfl~ 526 (823)
T KOG2259|consen 471 KN--ARVSDLECIDMCVAHLLKNLGKYPQDR-----DEILRCMGRIGQNHRRLVLSNMGRFLE 526 (823)
T ss_pred Hh--cCCCcHHHHHHHHHHHHHHhhhCCCCc-----HHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 63 22222 222 223333 3444443 347778888877776544444444443
No 55
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=0.0033 Score=71.25 Aligned_cols=140 Identities=21% Similarity=0.179 Sum_probs=112.8
Q ss_pred hHHHhhhhc----CCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcC-CCChHHHHHHHHHhcCC--ChhhhHHHH
Q 008746 64 VFGEMVMCS----ATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSL--RVANLVEYL 136 (555)
Q Consensus 64 lf~~vi~~~----~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~-~~n~~vr~lAL~~L~~i--~~~ei~~~l 136 (555)
+.|-|++.+ -.+|+++...+++++..+-.-+.+.+--.-..|..-+. +|+|.+||.+.-++|.+ +-|.+++..
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~ 999 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPW 999 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchh
Confidence 344445655 34679999999999999887777765555566666675 99999999999999997 558889988
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 008746 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (555)
Q Consensus 137 ~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~ 206 (555)
.+.+-+-+.|.++.|||+|++.+.++.-.+ .+...+.+..+..+ +.|+|+.+..-|=..+.|++.+.
T Consensus 1000 T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~c-l~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1000 TEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALC-LEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred hHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHH-hcCCcHHHHHHHHHHHHHhhhcc
Confidence 888999999999999999999999987543 33336677777777 69999999999999999998754
No 56
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.52 E-value=0.13 Score=56.06 Aligned_cols=235 Identities=15% Similarity=0.104 Sum_probs=132.1
Q ss_pred CChHHHHHHHHHHHHHHh--cCCCcchhHHHhh---------hhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHh
Q 008746 39 GIDDSKRELFKKVISYMT--IGIDVSAVFGEMV---------MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQR 107 (555)
Q Consensus 39 ~~~~~k~~~l~kli~~~~--~G~d~s~lf~~vi---------~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~k 107 (555)
++ ++.++.+.|++-..+ -|.+-.+..++++ .-++.+....|.+++.+.+...+.-.+- .++-+..
T Consensus 648 PD-eemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~---~v~R~v~ 723 (1172)
T KOG0213|consen 648 PD-EEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDP---IVSRVVL 723 (1172)
T ss_pred Ch-HHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchH---HHHHHhh
Confidence 44 456666667777555 4665555433332 2455666778899999999887665543 4588889
Q ss_pred HcCCCChHHHHHHHHH----hcCCChhh----hHHHHHHHHhhccCCCChHH--HH----HHHHHHHHHhhhCCCcccCC
Q 008746 108 DCKDEDPMIRGLALRS----LCSLRVAN----LVEYLVGPLGLGLKDNNSYV--RT----VAVIGVLKLYHISAPTCIDA 173 (555)
Q Consensus 108 DL~~~n~~vr~lAL~~----L~~i~~~e----i~~~l~~~i~~~l~d~~~~V--Rk----~A~lal~kl~~~~p~~~~~~ 173 (555)
|+.|.++..|.++..+ +++++..+ +-+.++..|.-++.+....+ =- ...-++++- ..|.+ +
T Consensus 724 ~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r--~kpyl---p 798 (1172)
T KOG0213|consen 724 DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGR--VKPYL---P 798 (1172)
T ss_pred hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhc--cccch---H
Confidence 9999999888766555 44555433 44555666666655443222 22 222222222 13332 5
Q ss_pred CchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCC
Q 008746 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVP 253 (555)
Q Consensus 174 ~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~ 253 (555)
.++..+..+ ++.+.+.|+..|..++..+... ...|..-..+-+ +=.-|.+.+++-.|-.--.||..+.....
T Consensus 799 qi~stiL~r-Lnnksa~vRqqaadlis~la~V-----lktc~ee~~m~~--lGvvLyEylgeeypEvLgsILgAikaI~n 870 (1172)
T KOG0213|consen 799 QICSTILWR-LNNKSAKVRQQAADLISSLAKV-----LKTCGEEKLMGH--LGVVLYEYLGEEYPEVLGSILGAIKAIVN 870 (1172)
T ss_pred HHHHHHHHH-hcCCChhHHHHHHHHHHHHHHH-----HHhccHHHHHHH--hhHHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence 566666666 6999999999999988877642 112322111111 00112233455555555555554444321
Q ss_pred CC-----hhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC
Q 008746 254 LD-----SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTL 290 (555)
Q Consensus 254 ~~-----~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~ 290 (555)
.- ..-..++++.+.++|++.-.-|.-.|+.++..+..
T Consensus 871 vigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iad 912 (1172)
T KOG0213|consen 871 VIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIAD 912 (1172)
T ss_pred hccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHh
Confidence 10 01134566666667766666666666666655544
No 57
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.49 E-value=0.015 Score=57.09 Aligned_cols=228 Identities=17% Similarity=0.204 Sum_probs=133.2
Q ss_pred hhccC-CCChHHHHHHHHHHHHHhh--hCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHH
Q 008746 141 GLGLK-DNNSYVRTVAVIGVLKLYH--ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRER 217 (555)
Q Consensus 141 ~~~l~-d~~~~VRk~A~lal~kl~~--~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~ 217 (555)
..+|. ..+|+++.+|..+++.... .+.+.+.+.+.++.+..+ ++++++.|+..|+.++..++..... .
T Consensus 18 l~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~l-L~~p~~~vr~~AL~aL~Nls~~~en-----~--- 88 (254)
T PF04826_consen 18 LCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSL-LNDPNPSVREKALNALNNLSVNDEN-----Q--- 88 (254)
T ss_pred HHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHH-cCCCChHHHHHHHHHHHhcCCChhh-----H---
Confidence 34454 4678999998888888632 222233345778888887 6999999999999999877543221 1
Q ss_pred hhhccHHHHHHHHhhcCC--CChhHHHHHHHHHHccCCCCh--hHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcc
Q 008746 218 EALISKPVIYYLLNRIKE--FSEWAQCLVLELVAKYVPLDS--NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT 293 (555)
Q Consensus 218 ~~ll~~~~~~~L~~~l~~--~~pw~q~~iL~~L~~~~~~~~--~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~ 293 (555)
..+ +.++.++|+.+.. .+...|...|++|+...-.+. ......+..+..+|.+.+..+...+.+++..++....
T Consensus 89 -~~I-k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~ 166 (254)
T PF04826_consen 89 -EQI-KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD 166 (254)
T ss_pred -HHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHH
Confidence 112 2356666664332 466799999999999864432 2233455666778889999999999999999876533
Q ss_pred hhHHHHHH-HHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhCCcccccccceeeeccCCcHHHHHHHHHHHHHccCCCCH
Q 008746 294 DVHQQVYE-RIKAPLLTLVSSG-SPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNT 371 (555)
Q Consensus 294 ~~~~~~l~-~i~~~L~~ll~~~-~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~ 371 (555)
.. ..++. +....+..+++.+ +.++-..+|..+..+... +.+.-.. +. +++ -..+-|+.+..+ .
T Consensus 167 ~~-~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~----~~~~~~~-~~--~~~-----~~~~~L~~~~~e--~ 231 (254)
T PF04826_consen 167 MT-RELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN----IKKEAYV-FV--QDD-----FSEDSLFSLFGE--S 231 (254)
T ss_pred HH-HHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh----hCcccce-ec--ccc-----CCchhHHHHHcc--H
Confidence 22 22222 2223345555543 334444444444333211 1111111 11 111 011122233223 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHH
Q 008746 372 YEIVTELCEYAANVDIPIARESI 394 (555)
Q Consensus 372 ~~Iv~eL~~y~~~~d~~~~~~~i 394 (555)
+...++|+..+...|++++.++|
T Consensus 232 ~~~~~~l~~l~~h~d~ev~~~v~ 254 (254)
T PF04826_consen 232 SQLAKKLQALANHPDPEVKEQVI 254 (254)
T ss_pred HHHHHHHHHHHcCCCHHHhhhcC
Confidence 46677777777778888887653
No 58
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0034 Score=62.60 Aligned_cols=325 Identities=18% Similarity=0.179 Sum_probs=203.2
Q ss_pred hhhcCCCCchhHHHHHHHHHHhcCCCCh--H--HHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhh-----hHH-HHHH
Q 008746 69 VMCSATSDIVLKKMCYLYVGNYAKVNPD--L--ALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----LVE-YLVG 138 (555)
Q Consensus 69 i~~~~s~~~~~Krl~yl~l~~~~~~~~e--~--~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~e-----i~~-~l~~ 138 (555)
.-++++.+..+.+-+.-++..++-.... + .++-...+...+..++-.+||.|..|+.++.+.+ ++. .-..
T Consensus 91 l~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~ 170 (550)
T KOG4224|consen 91 LALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALE 170 (550)
T ss_pred HHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchh
Confidence 3466788888888888888766533222 1 1122344667778889999999999999986543 221 1233
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHhhhCCC--cccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhH
Q 008746 139 PLGLGLKDNNSYVRTVAVIGVLKLYHISAP--TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (555)
Q Consensus 139 ~i~~~l~d~~~~VRk~A~lal~kl~~~~p~--~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~ 216 (555)
++.++-+.++..||+.|.-++..+-....+ ......-++.|..+ +..+|+.|+.-+..++..|.-... ...
T Consensus 171 pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsl-l~s~d~dvqyycttaisnIaVd~~------~Rk 243 (550)
T KOG4224|consen 171 PLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSL-LKSGDLDVQYYCTTAISNIAVDRR------ARK 243 (550)
T ss_pred hhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhh-hccCChhHHHHHHHHhhhhhhhHH------HHH
Confidence 455677888999999988888777532221 12235667788887 689999999999988888753211 111
Q ss_pred HhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHH-----HHHHHHHhccCchHHHHHHHHHHHHh--c
Q 008746 217 REALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDI-----MNLLEDRLQHANGAVVLSTIKVFLHL--T 289 (555)
Q Consensus 217 ~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i-----~~~l~~~L~s~~~aV~~eai~~i~~l--~ 289 (555)
+..-..+..++.|++.+.+.++-.++..=-.|+.+..++.- -..+ ++.+..++|+..--.+.+.+-+|-.+ .
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y-q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY-QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh-hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 11112233677777777888998888888888877654321 1222 34556677877655667777777333 3
Q ss_pred CCcchh-HHHHHHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHhhCCc----cccc-ccceeee-ccCCcHHHHHHHHHH
Q 008746 290 LSMTDV-HQQVYERIKAPLLTLVSSGSPE-QSYAVLSHLHILVMRAPF----IFAS-DYKHFYC-QYNEPSYVKKLKLEM 361 (555)
Q Consensus 290 ~~~~~~-~~~~l~~i~~~L~~ll~~~~~~-~ry~aL~~l~~l~~~~p~----~~~~-~~~~f~~-~~~dd~~Ir~~aL~i 361 (555)
+-.+.+ ..+ -...||+++|.-.|.+ ++..|...+..++..+-. ++.. -+..+.+ ..|.|-+++.+--.-
T Consensus 323 plNe~lI~da---gfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac 399 (550)
T KOG4224|consen 323 PLNEVLIADA---GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISAC 399 (550)
T ss_pred cCcccceecc---cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHH
Confidence 322211 110 1234678888776666 999999998877653311 1111 1122222 346677777765555
Q ss_pred HHHccCCCCHHH------HHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 008746 362 LTAVANESNTYE------IVTELCEYAANVDIPIARESIRAVGKIALQQ 404 (555)
Q Consensus 362 L~~l~~~~N~~~------Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~ 404 (555)
+..++=.+|-+. |++-|..+..+.+.|++-.+..+++.++...
T Consensus 400 ~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 400 IAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 555554444443 4455667777778888888888888877653
No 59
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.43 E-value=0.00074 Score=54.51 Aligned_cols=84 Identities=25% Similarity=0.264 Sum_probs=64.6
Q ss_pred Hhhhhc-CCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccC
Q 008746 67 EMVMCS-ATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLK 145 (555)
Q Consensus 67 ~vi~~~-~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~ 145 (555)
..++.+ .+++..+|.-+..++..+. ++ -+++.+.+-++|+|+.+|..|+.+||.+++++..+. +.+.+.
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~--~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~~~----L~~~l~ 72 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG--DP----EAIPALIELLKDEDPMVRRAAARALGRIGDPEAIPA----LIKLLQ 72 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT--HH----HHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTHHH----HHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC--CH----hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHH----HHHHHc
Confidence 345655 7888999998888888552 22 346788888899999999999999999998876554 446665
Q ss_pred C-CChHHHHHHHHHHH
Q 008746 146 D-NNSYVRTVAVIGVL 160 (555)
Q Consensus 146 d-~~~~VRk~A~lal~ 160 (555)
+ ++..||..|+.+++
T Consensus 73 ~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 73 DDDDEVVREAAAEALG 88 (88)
T ss_dssp C-SSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhhcC
Confidence 5 56788999988874
No 60
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.42 E-value=0.00031 Score=60.00 Aligned_cols=102 Identities=21% Similarity=0.167 Sum_probs=80.1
Q ss_pred HHHHHHhHcCCCChHHHHHHHHHhcCCCh--h----hhHH-HHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc---c
Q 008746 101 TINFLQRDCKDEDPMIRGLALRSLCSLRV--A----NLVE-YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---C 170 (555)
Q Consensus 101 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~----ei~~-~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~---~ 170 (555)
+++.+.+-+.++++.+|..|+.+++++.. + .+.+ .+++.+.+++.|+++.||+.|+.++..+....|+. +
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 35677777788889999999999999864 2 2333 56778888899999999999999999998765432 1
Q ss_pred cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 008746 171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (555)
Q Consensus 171 ~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~ 203 (555)
.+.+.++.+.+. +++.|..++..++.+|..++
T Consensus 88 ~~~g~l~~l~~~-l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNL-LDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHH-HhcCCHHHHHHHHHHHHHhh
Confidence 235688888888 58889999999988887654
No 61
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.36 E-value=0.0016 Score=60.48 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=76.0
Q ss_pred ChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHH
Q 008746 148 NSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIY 227 (555)
Q Consensus 148 ~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~ 227 (555)
+|.||..|+.+++-+...+|..+ +.|.+.+... ++|+||.|+.+|+..|..+...+.-. ...+.+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v--e~~~~~l~~~-L~D~~~~VR~~al~~Ls~Li~~d~ik-----------~k~~l~~ 66 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV--EPYLPNLYKC-LRDEDPLVRKTALLVLSHLILEDMIK-----------VKGQLFS 66 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH--HhHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHcCcee-----------ehhhhhH
Confidence 58899999999999999999998 7899999998 69999999999999999987654321 1223456
Q ss_pred HHHhhcCCCChhHHHHHHHHHHccCCC
Q 008746 228 YLLNRIKEFSEWAQCLVLELVAKYVPL 254 (555)
Q Consensus 228 ~L~~~l~~~~pw~q~~iL~~L~~~~~~ 254 (555)
.++..+.+.+|..+-..-.++..+...
T Consensus 67 ~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 777778889998888888888777544
No 62
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.33 E-value=0.18 Score=54.49 Aligned_cols=131 Identities=21% Similarity=0.215 Sum_probs=89.8
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCC--hhhhHHHHHHHHhh
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR--VANLVEYLVGPLGL 142 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~ei~~~l~~~i~~ 142 (555)
|-.|+..... +...|+|+--++..|+..-|++.--++|++..-+.|.+..||..|++.|..++ +++.+.-+...+.+
T Consensus 25 y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~Q 103 (556)
T PF05918_consen 25 YKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQ 103 (556)
T ss_dssp HHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHH
T ss_pred HHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHH
Confidence 5555555543 68899999999999999999999999999999999999999999999999996 57888888899999
Q ss_pred ccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHh--cCCChHHHHHHHHHHHH
Q 008746 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML--NDPDPQVVANCLSALQE 201 (555)
Q Consensus 143 ~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll--~d~d~~V~~~a~~~L~~ 201 (555)
+|...++-.+..+=-++..+++.+|... +...+... . ...|..|+--++..+.+
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k~t----L~~lf~~i-~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPKGT----LTGLFSQI-ESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HHHH----HHHHHHHH-H---HS-HHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcHHH----HHHHHHHH-HhcccCchHHHHHHHHHHHH
Confidence 9988877666544455555565565532 22222222 2 23567788888776654
No 63
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=97.33 E-value=0.057 Score=56.55 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHhccccCCCC---hHHHHHHHHHh-------h---h-------cCCcHHHHHHHHHHHHHHHhcCCchhH
Q 008746 462 PKAKAALIWMLGEYSQDMQD---APYILESLTEN-------W---E-------EEPSAEVRLHLLTAVMKCFFKRPPETQ 521 (555)
Q Consensus 462 ~~~~~~~~wiiGEy~~~~~~---~~~~l~~l~~~-------~---~-------~e~~~~vr~~~L~a~~Kl~~~~p~~~~ 521 (555)
.+.-..++|+||||+.-.-+ ..+.++.+.+. . . ....+.+=..++|+++|+..+.++-..
T Consensus 324 ~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~llyE~~~~~~~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~p 403 (459)
T PF14764_consen 324 EELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEALLYEVTQSRRDPSASRPSSQPRLMTVLMTALAKLASRSQDLIP 403 (459)
T ss_pred hHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHHHHHHHhhccccccccCCCCchhHHHHHHHHHHHHHHhCHhhhH
Confidence 34556789999999865533 24443332111 0 1 011156667799999999999874322
Q ss_pred HH---HHHHHHH---------hccCCCcchhhcccccccc
Q 008746 522 KV---LGAALAA---------GLADFHQVVFYGFFPPFSF 549 (555)
Q Consensus 522 ~~---l~~vl~~---------~~~d~d~evq~Ra~~~l~~ 549 (555)
.. +.++-+. .....+..|.+||.|++++
T Consensus 404 Rv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~L 443 (459)
T PF14764_consen 404 RVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNL 443 (459)
T ss_pred HHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHH
Confidence 11 2222220 1123467899999999776
No 64
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.30 E-value=0.35 Score=51.80 Aligned_cols=272 Identities=13% Similarity=0.109 Sum_probs=145.3
Q ss_pred HHhccCchHHHHHHHHHHHHhcCCcchh-HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCc-ccccccceee
Q 008746 268 DRLQHANGAVVLSTIKVFLHLTLSMTDV-HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYKHFY 345 (555)
Q Consensus 268 ~~L~s~~~aV~~eai~~i~~l~~~~~~~-~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~-~~~~~~~~f~ 345 (555)
.+|+|..+.|...|+.+...+.+-...- ....+.++...|-.-+...+|++-=.+|.++..+...+.- -.++-+..+.
T Consensus 611 ~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~il 690 (975)
T COG5181 611 KLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGIL 690 (975)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhcc
Confidence 3455666667777777665554321100 0223455555555567778888888888888877665421 1223222111
Q ss_pred -----eccCCcHHHHHHHHHHHHHccCCC-------CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccc-CcHHHHHH
Q 008746 346 -----CQYNEPSYVKKLKLEMLTAVANES-------NTYEIVTELCEYAANVDIPIARESIRAVGKIALQQ-YDVNAIVD 412 (555)
Q Consensus 346 -----~~~~dd~~Ir~~aL~iL~~l~~~~-------N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~-~~~~~~i~ 412 (555)
++.+.-..|-.-.++++-.+|..+ -|-.|.=||.+.+.+-+.++|+.+..+.|-++... |. .+++
T Consensus 691 P~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq--dvL~ 768 (975)
T COG5181 691 PSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ--DVLD 768 (975)
T ss_pred ccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH--HHHH
Confidence 234444556666777777776443 36668888888888889999999999999988764 43 2444
Q ss_pred HHHHHhhcccchhHHH-HHHHH-HHHHHhCCCCcchHHH-HHhhhc-ccCCCchHHHHHHHHHHhccccCCCChH-HHHH
Q 008746 413 RLLQFLEMEKDYVTAE-ALVLV-KDLLRKYPQWSHDCIA-VVGSIS-SQNVQEPKAKAALIWMLGEYSQDMQDAP-YILE 487 (555)
Q Consensus 413 ~ll~ll~~~~~~v~~e-~i~~i-~~ii~~~~~~~~~~~~-~l~~l~-~~~~~~~~~~~~~~wiiGEy~~~~~~~~-~~l~ 487 (555)
++++=|... -.+. +.+.+ ..|+..+-.-. ..+. ++..+- .+..-...+.++++++.--.++...+-. .+.-
T Consensus 769 ~LlnnLkvq---eRq~RvctsvaI~iVae~cgpf-sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itP 844 (975)
T COG5181 769 ILLNNLKVQ---ERQQRVCTSVAISIVAEYCGPF-SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITP 844 (975)
T ss_pred HHHhcchHH---HHHhhhhhhhhhhhhHhhcCch-hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444433221 1111 11111 11222221111 1111 122221 0111123456677777532232222211 2223
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHhcc---CCCcchhhccccc
Q 008746 488 SLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-ETQKVLGAALAAGLA---DFHQVVFYGFFPP 546 (555)
Q Consensus 488 ~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~-~~~~~l~~vl~~~~~---d~d~evq~Ra~~~ 546 (555)
.+-+...+.+ +.-|+...+.+-.+....|. ..++...++|..... ++.|-|+++.-|.
T Consensus 845 lleDAltDrD-~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg 906 (975)
T COG5181 845 LLEDALTDRD-PVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEG 906 (975)
T ss_pred HHHhhhcccc-hHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHH
Confidence 3344455666 88888888888777776553 236666677776553 4567777775544
No 65
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.26 E-value=0.0071 Score=68.68 Aligned_cols=232 Identities=13% Similarity=0.100 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCc---------chhHHHhhhhcCCCCchhHHHHHHHH-HHhcCCCChH---H-HHHHHHHH
Q 008746 41 DDSKRELFKKVISYMTIGIDV---------SAVFGEMVMCSATSDIVLKKMCYLYV-GNYAKVNPDL---A-LLTINFLQ 106 (555)
Q Consensus 41 ~~~k~~~l~kli~~~~~G~d~---------s~lf~~vi~~~~s~~~~~Krl~yl~l-~~~~~~~~e~---~-~l~in~l~ 106 (555)
.+-|..+|.-+..+..+=.|+ .++||++-.+..+++.+.=|++|--. ..++..---. . .+-.|.+.
T Consensus 476 a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~ 555 (1431)
T KOG1240|consen 476 ADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGML 555 (1431)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456777777777776654443 23566665565554666556666321 1111110001 0 01123333
Q ss_pred hHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcC
Q 008746 107 RDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND 186 (555)
Q Consensus 107 kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d 186 (555)
+|.++ . -+....++-....+...+...+..++.|+.|+||++-+-+++.++......-.+.-+...|... |+|
T Consensus 556 n~~ns---e---t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTf-LND 628 (1431)
T KOG1240|consen 556 NDPNS---E---TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITF-LND 628 (1431)
T ss_pred cCccc---c---cccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHH-hcC
Confidence 34333 2 1222222233456777788888899999999999998888888876554433234466889898 699
Q ss_pred CChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCC---ChhHHHHHH
Q 008746 187 PDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL---DSNEIFDIM 263 (555)
Q Consensus 187 ~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~---~~~~~~~i~ 263 (555)
+|+..+++-+..+..++---.. ....+ -.+.-|.+.+.+..|.+.+++|+.|..++.. ......+++
T Consensus 629 kDw~LR~aFfdsI~gvsi~VG~------rs~se----yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~ 698 (1431)
T KOG1240|consen 629 KDWRLRGAFFDSIVGVSIFVGW------RSVSE----YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDIL 698 (1431)
T ss_pred ccHHHHHHHHhhccceEEEEee------eeHHH----HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 9999998876666544210000 00001 0345566679999999999999988877533 223456788
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhc
Q 008746 264 NLLEDRLQHANGAVVLSTIKVFLHLT 289 (555)
Q Consensus 264 ~~l~~~L~s~~~aV~~eai~~i~~l~ 289 (555)
+.+.++|-|.|..|+.+++-.|....
T Consensus 699 ~~v~PlL~hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 699 QDVLPLLCHPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred HhhhhheeCchHHHHHHHHHHHHHHH
Confidence 88889999999988888877776543
No 66
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.074 Score=58.75 Aligned_cols=177 Identities=20% Similarity=0.172 Sum_probs=118.1
Q ss_pred HHHHHhHcCCC-ChHHHHHHHHHhcCC---Chhh-----hHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHhhhCCCcc-
Q 008746 102 INFLQRDCKDE-DPMIRGLALRSLCSL---RVAN-----LVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTC- 170 (555)
Q Consensus 102 in~l~kDL~~~-n~~vr~lAL~~L~~i---~~~e-----i~~~l~~~i~~~l~d~-~~~VRk~A~lal~kl~~~~p~~~- 170 (555)
.+.|...|+.. +|..+-.||.-||.+ ++++ .++.++|.+..+++|. ++.+---|+.|+..++...|..+
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 47777777766 899999999998874 4444 4678999999999997 68999999999999999999875
Q ss_pred --cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHH
Q 008746 171 --IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELV 248 (555)
Q Consensus 171 --~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L 248 (555)
.+.+.++.+...|+.=.--.|.-.++.+|..|.+..|.. |.... .+...+..+.=++--.|-..|-+-
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A----iL~AG------~l~a~LsylDFFSi~aQR~Alaia 318 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA----ILQAG------ALSAVLSYLDFFSIHAQRVALAIA 318 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH----HHhcc------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245677766666544456668889999999998877741 21111 111111111112334677777777
Q ss_pred HccCCC----ChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 008746 249 AKYVPL----DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHL 288 (555)
Q Consensus 249 ~~~~~~----~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l 288 (555)
...+.. +..-.-+.++.|.++|++.+.-++-.+.-++..+
T Consensus 319 aN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 319 ANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 666533 3333344566678888887765544444444433
No 67
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.21 E-value=0.089 Score=58.78 Aligned_cols=214 Identities=18% Similarity=0.194 Sum_probs=127.0
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhcC--CCChHHH--HHHHHHHhHcCCCChHHHHHHHHHhcCCCh-hh----hHH-
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYAK--VNPDLAL--LTINFLQRDCKDEDPMIRGLALRSLCSLRV-AN----LVE- 134 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~~--~~~e~~~--l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~e----i~~- 134 (555)
+.-.++++.+++.++.-++.-++..+.- ++.+.+. =++..+.+.+.++|+..+..|++.|.|+.. ++ |+.
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~ 371 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSL 371 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHC
Confidence 4555778888999888888888877653 3333211 347889999999999999999999999955 22 222
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHHHHhhh--CCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchH
Q 008746 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI--SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (555)
Q Consensus 135 ~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~--~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~ 212 (555)
.++|.+..++.+++ .|-.|.-.++.+... ....+...+.++.+.++++..+++.|...++.++..++..... ...
T Consensus 372 GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn-aql 448 (708)
T PF05804_consen 372 GLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN-AQL 448 (708)
T ss_pred CCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH-HHH
Confidence 35677788887654 333333333333321 1122233567788877766767777766666666666543221 112
Q ss_pred hhhHHhhhccHHHHHHHHhh-cCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHH---HHhcc-CchHHHHHHHHHHHH
Q 008746 213 ASREREALISKPVIYYLLNR-IKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLE---DRLQH-ANGAVVLSTIKVFLH 287 (555)
Q Consensus 213 ~~~~~~~ll~~~~~~~L~~~-l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~---~~L~s-~~~aV~~eai~~i~~ 287 (555)
.|.. +.+..|++. +...+ ..+|++++.....++.....+.+.+. ..+.+ .+...+.||+-++..
T Consensus 449 m~~g-------~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaN 517 (708)
T PF05804_consen 449 MCEG-------NGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILAN 517 (708)
T ss_pred HHhc-------CcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence 2221 123333332 22233 34556666665444333334444443 33433 466788999998888
Q ss_pred hcCCc
Q 008746 288 LTLSM 292 (555)
Q Consensus 288 l~~~~ 292 (555)
+..+.
T Consensus 518 L~~~~ 522 (708)
T PF05804_consen 518 LTIPD 522 (708)
T ss_pred cccCC
Confidence 87543
No 68
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.18 Score=54.04 Aligned_cols=384 Identities=12% Similarity=0.037 Sum_probs=203.4
Q ss_pred hccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhc
Q 008746 142 LGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALI 221 (555)
Q Consensus 142 ~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll 221 (555)
..-.|+++.||++-+-|....+..+..-- ..++.+.....+.++.+..++-+.+........+-+.. ....
T Consensus 24 ~~g~d~~~~v~~~ml~a~~~~~~~~~~~~-v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~--------d~~~ 94 (569)
T KOG1242|consen 24 SAGEDRRIDVRGNMLEAGEAAINQHGDQN-VLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV--------DPRP 94 (569)
T ss_pred ccCCCcchhhHHhHHHHHHHHHHhhhHHH-HHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc--------Ccch
Confidence 33388999999877777666665443321 15566777777555666666666665555554432221 0112
Q ss_pred cHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChh-HHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCc---chhHH
Q 008746 222 SKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN-EIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM---TDVHQ 297 (555)
Q Consensus 222 ~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~-~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~---~~~~~ 297 (555)
+ +.+..+++.++.+++..|.....+|..+...... ....+.+.+..++.....+=...++..+..+-... ..-..
T Consensus 95 ~-~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~ 173 (569)
T KOG1242|consen 95 I-SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEF 173 (569)
T ss_pred h-HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhh
Confidence 2 3677889999999999999999998887544222 22345555556666555554444444443322211 11111
Q ss_pred HHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHhhCCcccccccc-----eeeeccCCcHHHHHHHHHHHHHccCC---
Q 008746 298 QVYERIKAPLLTLVSSGSPEQ-SYAVLSHLHILVMRAPFIFASDYK-----HFYCQYNEPSYVKKLKLEMLTAVANE--- 368 (555)
Q Consensus 298 ~~l~~i~~~L~~ll~~~~~~~-ry~aL~~l~~l~~~~p~~~~~~~~-----~f~~~~~dd~~Ir~~aL~iL~~l~~~--- 368 (555)
.++. .|...+.++.+-. |..++-........-...+.+++. .|.|..|....+|..+.+..-++.+.
T Consensus 174 ~~l~----~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 174 GFLD----NLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hHHH----HHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 1222 2333444433333 334555555444443345666654 34466788899999988877776544
Q ss_pred CCHHHHHHHHHHHhhcCCHHHH--HHHHHHHHHHhcccCcH-----HHHHHHHHHHhhcccchhHHHHHHHHHHHHH--h
Q 008746 369 SNTYEIVTELCEYAANVDIPIA--RESIRAVGKIALQQYDV-----NAIVDRLLQFLEMEKDYVTAEALVLVKDLLR--K 439 (555)
Q Consensus 369 ~N~~~Iv~eL~~y~~~~d~~~~--~~~i~~i~~la~~~~~~-----~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~--~ 439 (555)
.-++.++.-++.-+.+. .++ ..++..+|-++.--|.. ...+..+.+.+.+....+.+..+..+.++.. .
T Consensus 250 ~aVK~llpsll~~l~~~--kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid 327 (569)
T KOG1242|consen 250 YAVKLLLPSLLGSLLEA--KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID 327 (569)
T ss_pred chhhHhhhhhHHHHHHH--hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc
Confidence 44555555544322222 222 23444554444332331 3466777777777767777766666555533 2
Q ss_pred CCCCcchHHHHHhhhcccCCCchHH-HHHHHHHH--hccccCCCC-hHHHHHHHHHhhhcCCcHHHHHH---HHHHHHHH
Q 008746 440 YPQWSHDCIAVVGSISSQNVQEPKA-KAALIWML--GEYSQDMQD-APYILESLTENWEEEPSAEVRLH---LLTAVMKC 512 (555)
Q Consensus 440 ~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~wii--GEy~~~~~~-~~~~l~~l~~~~~~e~~~~vr~~---~L~a~~Kl 512 (555)
+|+.+. ++..++ +.+.+|.. -..++-.+ ++|...++. .-.++--++++=..+.+..++-. +....+|+
T Consensus 328 N~dI~~----~ip~Ll-d~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L 402 (569)
T KOG1242|consen 328 NPDIQK----IIPTLL-DALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL 402 (569)
T ss_pred cHHHHH----HHHHHH-HHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence 455432 333333 33444442 12233333 334444433 23444333333223322444433 44456665
Q ss_pred HhcCCchhHHHHHHH---HHHhccCCCcchhhcccccc
Q 008746 513 FFKRPPETQKVLGAA---LAAGLADFHQVVFYGFFPPF 547 (555)
Q Consensus 513 ~~~~p~~~~~~l~~v---l~~~~~d~d~evq~Ra~~~l 547 (555)
. ..|.+..+.+..+ ++....|.+||+|.-|.+-+
T Consensus 403 v-eDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 403 V-EDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARAL 439 (569)
T ss_pred h-cCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHH
Confidence 4 2344555555555 34556778899996654433
No 69
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.16 E-value=0.0012 Score=56.34 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=75.6
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc---cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchH
Q 008746 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (555)
Q Consensus 136 l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~---~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~ 212 (555)
+++.+.+.+.|.++.+|..|+.++..+...+|+.. .+.+.++.+..+ ++|+|+.|+..|+.+|..++...+..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~-l~~~~~~v~~~a~~~L~~l~~~~~~~--- 83 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQL-LKSEDEEVVKAALWALRNLAAGPEDN--- 83 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHH-HhCCCHHHHHHHHHHHHHHccCcHHH---
Confidence 56777788899999999999999999987644432 235788899998 58899999999999999998754321
Q ss_pred hhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHcc
Q 008746 213 ASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (555)
Q Consensus 213 ~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~ 251 (555)
.........+..+.+.+.+.+...+...+.+|..+
T Consensus 84 ----~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 84 ----KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred ----HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 11111111345555555666666666666666543
No 70
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.016 Score=57.38 Aligned_cols=214 Identities=15% Similarity=0.112 Sum_probs=141.2
Q ss_pred HHHHHhHcCCCChHHHHHHHHHhcCCC-hhhhHHH------HHHHHhhccCCCChHH--HHHHHHHHHHHhh-hCCC--c
Q 008746 102 INFLQRDCKDEDPMIRGLALRSLCSLR-VANLVEY------LVGPLGLGLKDNNSYV--RTVAVIGVLKLYH-ISAP--T 169 (555)
Q Consensus 102 in~l~kDL~~~n~~vr~lAL~~L~~i~-~~ei~~~------l~~~i~~~l~d~~~~V--Rk~A~lal~kl~~-~~p~--~ 169 (555)
+..|.+-|.+++..+|..|+=+||++. +.+.++. ++.++..++.++.+.+ -+.|-..+..+++ ++|. -
T Consensus 159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w 238 (526)
T COG5064 159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238 (526)
T ss_pred hHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch
Confidence 566778889999999999999999993 3443332 3455666666665533 3677778888876 4443 0
Q ss_pred ccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 008746 170 CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVA 249 (555)
Q Consensus 170 ~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~ 249 (555)
-.....++.|.++ ....|+.|+.-|+=++..+..-.- .|.. ..++..+-.+|++.|...+--.|.-+|+..+
T Consensus 239 ~~isqalpiL~KL-iys~D~evlvDA~WAiSYlsDg~~-----E~i~--avld~g~~~RLvElLs~~sa~iqtPalR~vG 310 (526)
T COG5064 239 SNISQALPILAKL-IYSRDPEVLVDACWAISYLSDGPN-----EKIQ--AVLDVGIPGRLVELLSHESAKIQTPALRSVG 310 (526)
T ss_pred HHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHhccCcH-----HHHH--HHHhcCCcHHHHHHhcCccccccCHHHHhhc
Confidence 0012345677777 688999999999999999865321 1222 2233234567888888888788889999998
Q ss_pred ccCCCChhHHH-----HHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHH
Q 008746 250 KYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVL 323 (555)
Q Consensus 250 ~~~~~~~~~~~-----~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL 323 (555)
.....+..... -.+.++.++|.|.-..+..||+=+|-.+......-.+.+++ -++++|+.++++-+--+|--|-
T Consensus 311 NIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEAC 390 (526)
T COG5064 311 NIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEAC 390 (526)
T ss_pred CeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 88644432222 24567778888888889999988887766533322234443 4677888888764444444333
No 71
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.10 E-value=0.13 Score=59.03 Aligned_cols=288 Identities=16% Similarity=0.167 Sum_probs=170.1
Q ss_pred chhHHHHHHHHHHhcCC-CChHHH-HHHHHHHhHcCCCChHHHHHHHHHhcCCCh---------hh-hHHHHHHHHhhcc
Q 008746 77 IVLKKMCYLYVGNYAKV-NPDLAL-LTINFLQRDCKDEDPMIRGLALRSLCSLRV---------AN-LVEYLVGPLGLGL 144 (555)
Q Consensus 77 ~~~Krl~yl~l~~~~~~-~~e~~~-l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---------~e-i~~~l~~~i~~~l 144 (555)
...|.-+...+..+... +.|..+ -+...+..-++|+.+.||+.|+.+|+.+-. .. ..+.+.|.+..++
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~ 516 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL 516 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence 44455555555555433 333333 678899999999999999999999988621 11 4578999999999
Q ss_pred CC-CChHHHHHHHHHHHHHhh------------------hCCCc--ccCC-------Cc----hHHHHHHHhcCCChHHH
Q 008746 145 KD-NNSYVRTVAVIGVLKLYH------------------ISAPT--CIDA-------DF----PPTLKHLMLNDPDPQVV 192 (555)
Q Consensus 145 ~d-~~~~VRk~A~lal~kl~~------------------~~p~~--~~~~-------~~----~~~l~~lll~d~d~~V~ 192 (555)
.| ...+||-+=|-|+..+.+ .+|+. ..+. .+ -..+..+ +.|++|.|+
T Consensus 517 ~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sL-lsd~~~~Vk 595 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSL-LSDSPPIVK 595 (1431)
T ss_pred ccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHH-HcCCchHHH
Confidence 99 677999877777666532 12322 1001 11 2234444 789999999
Q ss_pred HHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHc---cC-CCChhHHHHHHHHHHH
Q 008746 193 ANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK---YV-PLDSNEIFDIMNLLED 268 (555)
Q Consensus 193 ~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~---~~-~~~~~~~~~i~~~l~~ 268 (555)
.+.+..+..+|.--. ... ..+ -++++|+.-|++-++-++....+-+.- |. +. ...+-+++.+..
T Consensus 596 r~Lle~i~~LC~FFG-----k~k-sND----~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q 663 (1431)
T KOG1240|consen 596 RALLESIIPLCVFFG-----KEK-SND----VILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQ 663 (1431)
T ss_pred HHHHHHHHHHHHHhh-----hcc-ccc----chHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHH
Confidence 988887776653100 000 001 157888888999977788888887763 22 22 123346666777
Q ss_pred HhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcc-----cccccce
Q 008746 269 RLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI-----FASDYKH 343 (555)
Q Consensus 269 ~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~-----~~~~~~~ 343 (555)
-|.+.-++|+..|..++-.+....---+..+. .+.....-||-..+.=+|+.++..|..+.+.-..+ +.|-+..
T Consensus 664 ~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irp 742 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-DILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRP 742 (1431)
T ss_pred hccCcchhhHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHH
Confidence 77888899987777665433322111112222 23333344565665668999999998776653221 2233333
Q ss_pred eeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHh
Q 008746 344 FYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYA 382 (555)
Q Consensus 344 f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~ 382 (555)
|+ ..+. +-..+.++|..-+-+.=-..|.+.+..+-
T Consensus 743 fl--~~~v--~~i~s~~~LlsclkpPVsRsv~~~l~r~~ 777 (1431)
T KOG1240|consen 743 FL--ERPV--IQIESKEVLLSCLKPPVSRSVFNQLLRWS 777 (1431)
T ss_pred hh--hccH--hhhcchHHHHHHhcCCCcHHHHHHHHHHh
Confidence 22 1222 23344455555544444445666555553
No 72
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.08 E-value=0.0015 Score=47.72 Aligned_cols=49 Identities=27% Similarity=0.245 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhcCCCh------hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHH
Q 008746 114 PMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKL 162 (555)
Q Consensus 114 ~~vr~lAL~~L~~i~~------~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl 162 (555)
|.+|..|+.+||++.. ....+.+++.+..++.|+++.||.+|+.|+.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999998742 235667888888999999999999999998754
No 73
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=0.67 Score=50.61 Aligned_cols=241 Identities=23% Similarity=0.184 Sum_probs=126.3
Q ss_pred cchhHHHhhh-hc-C--CCCchhHHHHHH--HHHHhcCCCChH--HHHHHHHHHhHcCCCChHHHHHHHHHhcCCCh---
Q 008746 61 VSAVFGEMVM-CS-A--TSDIVLKKMCYL--YVGNYAKVNPDL--ALLTINFLQRDCKDEDPMIRGLALRSLCSLRV--- 129 (555)
Q Consensus 61 ~s~lf~~vi~-~~-~--s~~~~~Krl~yl--~l~~~~~~~~e~--~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--- 129 (555)
.++-|-++++ .+ . .+....|-+-++ ++..+-+.+++. .-=..-.+.+...+++--||=..+.-++.+.+
T Consensus 38 F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ 117 (892)
T KOG2025|consen 38 FSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA 117 (892)
T ss_pred hHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc
Confidence 3434667765 22 1 233334444444 223333334332 11223456667778888887666655555433
Q ss_pred ---hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 008746 130 ---ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (555)
Q Consensus 130 ---~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~ 206 (555)
.++...+...+..-+.|..|.||.-|+.|+.++-. +|.. ++-.....+..++.+|+++.|+.+|+.-+.--...-
T Consensus 118 eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d~~d-ee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTl 195 (892)
T KOG2025|consen 118 EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-DPKD-EECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTL 195 (892)
T ss_pred ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-CCCC-CcccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccc
Confidence 44556666666677889999999999999999853 2221 124567888888889999999999876443222211
Q ss_pred cccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 008746 207 ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFL 286 (555)
Q Consensus 207 ~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~ 286 (555)
|-+ .+.|.|......+-.+.+++..+ + +.. ......+..+.--|....-+|.-++.+.+.
T Consensus 196 p~I-veRarDV~~anRrlvY~r~lpki-d---------------~r~---lsi~krv~LlewgLnDRe~sVk~A~~d~il 255 (892)
T KOG2025|consen 196 PCI-VERARDVSGANRRLVYERCLPKI-D---------------LRS---LSIDKRVLLLEWGLNDREFSVKGALVDAIL 255 (892)
T ss_pred hhH-HHHhhhhhHHHHHHHHHHhhhhh-h---------------hhh---hhHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 111 12233322211111112222211 0 000 001123334444566777788888888887
Q ss_pred HhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 008746 287 HLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHIL 329 (555)
Q Consensus 287 ~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l 329 (555)
+-+....+. .+...|.++=-+...+++..+|+++-..
T Consensus 256 ~~Wl~~~dg------ni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 256 SGWLRFSDG------NILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred HHHhhhccc------cHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 644322221 1122222322234456777777776654
No 74
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.96 E-value=0.0014 Score=54.17 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=55.2
Q ss_pred hhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccC--CCchHHHHHHHhcCCChHHHHHHH
Q 008746 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID--ADFPPTLKHLMLNDPDPQVVANCL 196 (555)
Q Consensus 129 ~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~--~~~~~~l~~lll~d~d~~V~~~a~ 196 (555)
..+..+.++++|.+++.|+++.||-.|+.|++.+.+..++.+.. +++.+.|.++ ..|+|+.|+.+|-
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl-~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL-SADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhHHHHHH
Confidence 45677889999999999999999999999999999877665421 4556677776 6999999998884
No 75
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.96 E-value=0.034 Score=53.71 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=107.5
Q ss_pred CCCChHHHHHHHHHHHHHhhhC-CCcccCCCch-------HHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhH
Q 008746 145 KDNNSYVRTVAVIGVLKLYHIS-APTCIDADFP-------PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (555)
Q Consensus 145 ~d~~~~VRk~A~lal~kl~~~~-p~~~~~~~~~-------~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~ 216 (555)
++.+-..|..|+..+.++.+.+ |... .+.+. ..+... ++|....|...|+.++..+...-... ++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~-l~d~Rs~v~~~A~~~l~~l~~~l~~~-~~---- 89 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQ-LSDLRSKVSKTACQLLSDLARQLGSH-FE---- 89 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH--S-HH---HHHHHHHHHHHHHHHHGGG-GH----
T ss_pred CccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhHh-HH----
Confidence 5566777777777777776655 1111 12232 333344 46777889999999999887653321 11
Q ss_pred HhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHH-HHHHHHHhccCchHHHHHHHHHHHHhcC-Cc--
Q 008746 217 REALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDI-MNLLEDRLQHANGAVVLSTIKVFLHLTL-SM-- 292 (555)
Q Consensus 217 ~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i-~~~l~~~L~s~~~aV~~eai~~i~~l~~-~~-- 292 (555)
..+ ...+..|++.+++...+.+......|..+...-+ -...+ ...+.....+.|+.|..++++.+..+-. ..
T Consensus 90 --~~~-~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 90 --PYA-DILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp --HHH-HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT----
T ss_pred --HHH-HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch
Confidence 111 2256778888888888988888777777654322 11234 6777788899999999999988765422 22
Q ss_pred -chhH-HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCc
Q 008746 293 -TDVH-QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF 335 (555)
Q Consensus 293 -~~~~-~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~ 335 (555)
+.+. ...++.+.+.+..++++.++++|..|-+.+..+.+..|+
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 2222 223566778888999999999999999999998877765
No 76
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.89 Score=49.62 Aligned_cols=339 Identities=16% Similarity=0.210 Sum_probs=190.5
Q ss_pred hHHHHHHHHHHhcCCCChH-HHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHH
Q 008746 79 LKKMCYLYVGNYAKVNPDL-ALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVI 157 (555)
Q Consensus 79 ~Krl~yl~l~~~~~~~~e~-~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~l 157 (555)
+=|+.|+|+.-+ +=|. .+-++|-+. .-+-+.-.+==+++.+|-+ .+.++...+...|++=+.+.+|.--.-|+.
T Consensus 59 V~KLlyI~llg~---dIdFGhmEaV~LLs-s~kysEKqIGYl~is~L~n-~n~dl~klvin~iknDL~srn~~fv~LAL~ 133 (938)
T KOG1077|consen 59 VCKLLYIYLLGY---DIDFGHMEAVNLLS-SNKYSEKQIGYLFISLLLN-ENSDLMKLVINSIKNDLSSRNPTFVCLALH 133 (938)
T ss_pred HHHHHHHHHhcC---ccccchHHHHHHhh-cCCccHHHHhHHHHHHHHh-cchHHHHHHHHHHHhhhhcCCcHHHHHHHH
Confidence 456788887663 2222 234444332 2233444555566666665 347888888899999898889888888888
Q ss_pred HHHHHhhhCCCcccCCCchHHHHHHHh-cCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCC
Q 008746 158 GVLKLYHISAPTCIDADFPPTLKHLML-NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF 236 (555)
Q Consensus 158 al~kl~~~~p~~~~~~~~~~~l~~lll-~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~ 236 (555)
|++.+-.. +.. +.+.+.+.++|. .+.-+.|+..|...|..+.+..|+... ++- -+.+++..|++.
T Consensus 134 ~I~niG~r--e~~--ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~---~~~-------W~~riv~LL~D~ 199 (938)
T KOG1077|consen 134 CIANIGSR--EMA--EAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN---PGE-------WAQRIVHLLDDQ 199 (938)
T ss_pred HHHhhccH--hHH--HHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC---hhh-------HHHHHHHHhCcc
Confidence 88887531 111 233444445432 456677877776677788887775311 111 233444444442
Q ss_pred C---hhHHHHHHHHHHccCCCChhHH-HHHHHHHHHHh-------c------cCchHHHHHHHHHHHHhcCCcchhHHHH
Q 008746 237 S---EWAQCLVLELVAKYVPLDSNEI-FDIMNLLEDRL-------Q------HANGAVVLSTIKVFLHLTLSMTDVHQQV 299 (555)
Q Consensus 237 ~---pw~q~~iL~~L~~~~~~~~~~~-~~i~~~l~~~L-------~------s~~~aV~~eai~~i~~l~~~~~~~~~~~ 299 (555)
+ --.-..++.+|.++.|.+-... ..-+..+.... + -.+|.......|++..+... ++-. .
T Consensus 200 ~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~-~D~~--~ 276 (938)
T KOG1077|consen 200 HMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTP-EDPS--T 276 (938)
T ss_pred ccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCC-CCch--H
Confidence 2 1134566777777665421110 01111111111 1 13566667777777665433 2211 1
Q ss_pred HHHHHHHHHHHhcCCC----------chhHHHHH-HHHHHHHhhC--Ccccccc---cceeeeccCCcHHHHHHHHHHHH
Q 008746 300 YERIKAPLLTLVSSGS----------PEQSYAVL-SHLHILVMRA--PFIFASD---YKHFYCQYNEPSYVKKLKLEMLT 363 (555)
Q Consensus 300 l~~i~~~L~~ll~~~~----------~~~ry~aL-~~l~~l~~~~--p~~~~~~---~~~f~~~~~dd~~Ir~~aL~iL~ 363 (555)
..++.+.|.++|+... .|.+-++| +.|...+..+ |++...- +-.| ..+..+.||-.+||-+.
T Consensus 277 r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~f--ls~rE~NiRYLaLEsm~ 354 (938)
T KOG1077|consen 277 RARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQF--LSHRETNIRYLALESMC 354 (938)
T ss_pred HHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH--hhcccccchhhhHHHHH
Confidence 2233444444444211 23343443 3333333333 3343332 2233 24555679999999999
Q ss_pred HccCCCCHHHHHHHHHH----Hhh-cCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 008746 364 AVANESNTYEIVTELCE----YAA-NVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLR 438 (555)
Q Consensus 364 ~l~~~~N~~~Iv~eL~~----y~~-~~d~~~~~~~i~~i~~la~~~~~~~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~ 438 (555)
.||..+-..+.|+.-++ -++ +.|..+|+.++..+--.+-. .+...+++-|++.|..+...+.+|.+.-+.-+.+
T Consensus 355 ~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak~IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 355 KLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAKQIVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch-hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 99998877777665433 344 46889999998888555532 2345689999999999876777776655555556
Q ss_pred hCCC
Q 008746 439 KYPQ 442 (555)
Q Consensus 439 ~~~~ 442 (555)
+|..
T Consensus 434 KyAt 437 (938)
T KOG1077|consen 434 KYAT 437 (938)
T ss_pred HhcC
Confidence 6553
No 77
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=0.21 Score=57.32 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=114.8
Q ss_pred HHHHhcCCCcchhHHHhhhhcCCCC-----chhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcC
Q 008746 52 ISYMTIGIDVSAVFGEMVMCSATSD-----IVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCS 126 (555)
Q Consensus 52 i~~~~~G~d~s~lf~~vi~~~~s~~-----~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~ 126 (555)
+.++..-|....++..|++-+.+.. ....+..-.++..+...-|.+++--.+.|..-+.+.+...|+.-+..+|+
T Consensus 259 v~l~~sky~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n 338 (1251)
T KOG0414|consen 259 VTLVRSKYGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICAN 338 (1251)
T ss_pred HHHHHHhcccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3334444666778888887665543 44567777888888888898877778888888888999999999999999
Q ss_pred CCh-----hh-------hHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCccc-CCCchHHHHHHHhcCCChHHHH
Q 008746 127 LRV-----AN-------LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI-DADFPPTLKHLMLNDPDPQVVA 193 (555)
Q Consensus 127 i~~-----~e-------i~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~-~~~~~~~l~~lll~d~d~~V~~ 193 (555)
+.. ++ +...++..+...+.|-++|||-+++.-..++++....... ..++....-.. +.|++..|+.
T Consensus 339 ~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~gr-l~DkSslVRk 417 (1251)
T KOG0414|consen 339 LVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGR-LEDKSSLVRK 417 (1251)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcc-cccccHHHHH
Confidence 732 22 2234667777888999999999999999999876543320 02233333344 5799999999
Q ss_pred HHHHHHHHHHhhcc
Q 008746 194 NCLSALQEIWSLEA 207 (555)
Q Consensus 194 ~a~~~L~~i~~~~~ 207 (555)
+|+.++..+..++|
T Consensus 418 ~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 418 NAIQLLSSLLDRHP 431 (1251)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999988877
No 78
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.91 E-value=0.088 Score=52.38 Aligned_cols=291 Identities=16% Similarity=0.179 Sum_probs=164.3
Q ss_pred HHHHhhcc-CCCChHHHHHHHHHHHHHhhhCCC---cccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchH
Q 008746 137 VGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (555)
Q Consensus 137 ~~~i~~~l-~d~~~~VRk~A~lal~kl~~~~p~---~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~ 212 (555)
+|...+.+ .+.+...+-.|+.|+..+..-..+ .+.+.+.++.+..+ +.+++..|+-.++=+|..|+-+.++
T Consensus 116 VpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiql-L~s~~~~V~eQavWALGNiAGDS~~---- 190 (526)
T COG5064 116 VPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQL-LSSTEDDVREQAVWALGNIAGDSEG---- 190 (526)
T ss_pred cHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHH-HcCchHHHHHHHHHHhccccCCchh----
Confidence 34444444 455566677888888887642211 22356778888887 5888888999999999988765542
Q ss_pred hhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHH----HHHccCCC-----ChhHHHHHHHHHHHHhccCchHHHHHHHH
Q 008746 213 ASREREALISKPVIYYLLNRIKEFSEWAQCLVLE----LVAKYVPL-----DSNEIFDIMNLLEDRLQHANGAVVLSTIK 283 (555)
Q Consensus 213 ~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~----~L~~~~~~-----~~~~~~~i~~~l~~~L~s~~~aV~~eai~ 283 (555)
|+|.. +....+.-++..+.... ..+.+++ .|..+++. +-......++.+..++.+.++-|+..|.=
T Consensus 191 -~RD~v--L~~galeplL~ll~ss~--~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~W 265 (526)
T COG5064 191 -CRDYV--LQCGALEPLLGLLLSSA--IHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACW 265 (526)
T ss_pred -HHHHH--HhcCchHHHHHHHHhcc--chHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 44432 22223333444333221 1233333 33333321 22233456777788888999999888877
Q ss_pred HHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCc---cc--ccccceee-eccCCcHHHHH
Q 008746 284 VFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF---IF--ASDYKHFY-CQYNEPSYVKK 356 (555)
Q Consensus 284 ~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~---~~--~~~~~~f~-~~~~dd~~Ir~ 356 (555)
+|-++.....+-.+.+++ .+.+-|+.+|++.+..++--||+++.-++.-... ++ .-.++.|. .+.+.-..||+
T Consensus 266 AiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irK 345 (526)
T COG5064 266 AISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRK 345 (526)
T ss_pred HHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhh
Confidence 777665432222233333 2223356678888899999999998866533211 00 01112221 23444467888
Q ss_pred HHHHHHHHccCCCCHHHH--------HHHHHHHhhcCCHHHHHHHHHHHHHHh---cccCcHH------HHHHHHHHHhh
Q 008746 357 LKLEMLTAVANESNTYEI--------VTELCEYAANVDIPIARESIRAVGKIA---LQQYDVN------AIVDRLLQFLE 419 (555)
Q Consensus 357 ~aL~iL~~l~~~~N~~~I--------v~eL~~y~~~~d~~~~~~~i~~i~~la---~~~~~~~------~~i~~ll~ll~ 419 (555)
.+-=.+..+ +..|.+.| ++-|.+.+...+...+.++-=+|.... .+-|+.- -+++-+.++|.
T Consensus 346 EaCWTiSNI-TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~ 424 (526)
T COG5064 346 EACWTISNI-TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD 424 (526)
T ss_pred hhheeeccc-ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHh
Confidence 877666655 34455543 333455555566667777766665543 3345521 24566666666
Q ss_pred cccchhHHHHHHHHHHHHH
Q 008746 420 MEKDYVTAEALVLVKDLLR 438 (555)
Q Consensus 420 ~~~~~v~~e~i~~i~~ii~ 438 (555)
...+.+.+-.+..+++++.
T Consensus 425 ~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 425 VVDNKIIEVALDAIENILK 443 (526)
T ss_pred ccCccchhhhHHHHHHHHh
Confidence 5545555555666666654
No 79
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.90 E-value=0.008 Score=64.53 Aligned_cols=126 Identities=21% Similarity=0.246 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC-----ChhhhHH-------HHHHHHhhccCCCC
Q 008746 81 KMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL-----RVANLVE-------YLVGPLGLGLKDNN 148 (555)
Q Consensus 81 rl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i-----~~~ei~~-------~l~~~i~~~l~d~~ 148 (555)
|-+-+|+..+.+..|.+++---+.+.+-|.+.....||.-+...+++ .+++|.+ .++.-+...+.|.+
T Consensus 280 k~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~ 359 (1128)
T COG5098 280 KDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTY 359 (1128)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccc
Confidence 55667888888888999888899999999999999999999999997 3444444 66777778899999
Q ss_pred hHHHHHHHHHHHHHhhhCCCccc-CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 008746 149 SYVRTVAVIGVLKLYHISAPTCI-DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 149 ~~VRk~A~lal~kl~~~~p~~~~-~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~ 207 (555)
||+|-||+..+-++|..+.-... +.+++..+-+. +.|....|+.+|+.++..+.-..|
T Consensus 360 py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~-lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 360 PYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRR-LQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred hHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999975544331 24567777777 689999999999999998876655
No 80
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.89 E-value=0.18 Score=53.11 Aligned_cols=329 Identities=12% Similarity=0.115 Sum_probs=165.5
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhh--ccHHHHHHHHhhcCCCChhHHHHHHHHHHccC
Q 008746 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREAL--ISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV 252 (555)
Q Consensus 175 ~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~l--l~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~ 252 (555)
....+..++...+++.++...+.++.++...+|+.... ..+. .++..+..+++.+...+.+.+.+...+|+.+.
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~----f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKL----FHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHH----HHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 44445555444567778888888888887766531100 0000 01112344455555677788888888888875
Q ss_pred CCCh-----hHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHhcCCcchhHHHHH-HHHHHHHHHHhcC--CCchhHHHHH
Q 008746 253 PLDS-----NEIFDIMNLLEDRLQHAN-GAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSS--GSPEQSYAVL 323 (555)
Q Consensus 253 ~~~~-----~~~~~i~~~l~~~L~s~~-~aV~~eai~~i~~l~~~~~~~~~~~l-~~i~~~L~~ll~~--~~~~~ry~aL 323 (555)
..++ .+...+.+.+...+++.+ +.-..-|++++..+-... .....+. ..-.++|..++.. .+..+.|-++
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~l 208 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNATLGFQLQYQSI 208 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhccccHHHHHHHH
Confidence 3211 122335566777776543 344455555554332211 1111111 1223455555543 2446778777
Q ss_pred HHHHHHHhhCCcccc--ccccee-----eeccCCcHHHHHHHHHHHHHccCCCC--------HHHHHH-HHHHHh-----
Q 008746 324 SHLHILVMRAPFIFA--SDYKHF-----YCQYNEPSYVKKLKLEMLTAVANESN--------TYEIVT-ELCEYA----- 382 (555)
Q Consensus 324 ~~l~~l~~~~p~~~~--~~~~~f-----~~~~~dd~~Ir~~aL~iL~~l~~~~N--------~~~Iv~-eL~~y~----- 382 (555)
-.+=.+. -+++... .+...+ .+....-+-|-|.++.+|..+.+... ...+++ .+...+
T Consensus 209 l~lWlLS-F~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~ 287 (429)
T cd00256 209 FCIWLLT-FNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQ 287 (429)
T ss_pred HHHHHHh-ccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhc
Confidence 6654442 2222111 111100 11223335677788888888877431 112222 122211
Q ss_pred -hcCCHHHHHHHHHHHHHHhcccCc---HHHHHH-HHHHHhhcccchhHHHHHH-HHHHHHHhCCCCcchHHHHHhhhcc
Q 008746 383 -ANVDIPIARESIRAVGKIALQQYD---VNAIVD-RLLQFLEMEKDYVTAEALV-LVKDLLRKYPQWSHDCIAVVGSISS 456 (555)
Q Consensus 383 -~~~d~~~~~~~i~~i~~la~~~~~---~~~~i~-~ll~ll~~~~~~v~~e~i~-~i~~ii~~~~~~~~~~~~~l~~l~~ 456 (555)
.-.|+++..++-..-..+.+.+.+ ...|.. .....|+-+..+-++.-|. -...+- +-.-..+..+.+++
T Consensus 288 rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~----~~~~~llk~L~~iL- 362 (429)
T cd00256 288 RKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLN----EKNYELLKILIHLL- 362 (429)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHH----hcchHHHHHHHHHH-
Confidence 225777766554444444544322 112221 1122222111222222221 111121 11112334455554
Q ss_pred cCCCchHHHHHHHHHHhccccCCCChHHHHHHH------HHhhhcCCcHHHHHHHHHHHHHHHhc
Q 008746 457 QNVQEPKAKAALIWMLGEYSQDMQDAPYILESL------TENWEEEPSAEVRLHLLTAVMKCFFK 515 (555)
Q Consensus 457 ~~~~~~~~~~~~~wiiGEy~~~~~~~~~~l~~l------~~~~~~e~~~~vr~~~L~a~~Kl~~~ 515 (555)
+.-.++.+.+.++.=||||....|....+++.+ .+-...++ ++||..+|.++-|+...
T Consensus 363 ~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d-~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 363 ETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED-PNVRYEALLAVQKLMVH 426 (429)
T ss_pred hcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHHh
Confidence 444678888999999999999998766666543 22233445 99999999999998664
No 81
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.87 E-value=0.024 Score=55.58 Aligned_cols=148 Identities=21% Similarity=0.195 Sum_probs=95.2
Q ss_pred CCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccC
Q 008746 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV 252 (555)
Q Consensus 173 ~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~ 252 (555)
++-.+.+..+|....||.+...|+.++........ +.+...-+ ..+.-+.+.+++++|+.+.+.+..|....
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~------nq~~Ir~~--Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls 82 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPF------NQDIIRDL--GGISLIGSLLNDPNPSVREKALNALNNLS 82 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChh------HHHHHHHc--CCHHHHHHHcCCCChHHHHHHHHHHHhcC
Confidence 44456677775557899999999999887643221 11111001 13444566688999999999999999886
Q ss_pred CCChh--HHHHHHHHHHH-Hhcc-CchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 008746 253 PLDSN--EIFDIMNLLED-RLQH-ANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHI 328 (555)
Q Consensus 253 ~~~~~--~~~~i~~~l~~-~L~s-~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~ 328 (555)
...+. .....+..+.. ...+ .|+.+-.++.+.+..++... +.+.. +....+.+..++.+++.++|.-+|+.+.-
T Consensus 83 ~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~-l~~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 83 VNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHM-LANYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred CChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhh-HHhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 54322 22333444333 3333 47789899999999886543 22222 23334456788888889999999998776
Q ss_pred HH
Q 008746 329 LV 330 (555)
Q Consensus 329 l~ 330 (555)
+.
T Consensus 161 LS 162 (254)
T PF04826_consen 161 LS 162 (254)
T ss_pred hc
Confidence 64
No 82
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.85 E-value=1.1 Score=52.94 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=108.2
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCC
Q 008746 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL 254 (555)
Q Consensus 175 ~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~ 254 (555)
+...+... ++++-+.++.-|+..|..|...+|.+ +.++..-...-..+.+.+--++-.+++++++|.-.
T Consensus 817 yLk~Il~~-l~e~~ialRtkAlKclS~ive~Dp~v----------L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 817 YLKLILSV-LGENAIALRTKALKCLSMIVEADPSV----------LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS 885 (1692)
T ss_pred HHHHHHHH-hcCchHHHHHHHHHHHHHHHhcChHh----------hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc
Confidence 55666666 68899999999999999998887742 12222222233345677778899999999999988
Q ss_pred ChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 008746 255 DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (555)
Q Consensus 255 ~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~ 331 (555)
.++....+++.+.+...+.+-+|+--+++.+.++....+++.. ..+-++.+|.+ .++.+.+++-++.+.+..++-
T Consensus 886 ~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i~~~cakmlrR-v~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 886 IPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-IVDMCAKMLRR-VNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-HHHHHHHHHHH-hccchhHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999887766555422 12333444444 566777799999999998873
No 83
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.82 E-value=0.0018 Score=41.27 Aligned_cols=30 Identities=23% Similarity=0.049 Sum_probs=24.8
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHHHhhh
Q 008746 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHI 165 (555)
Q Consensus 136 l~~~i~~~l~d~~~~VRk~A~lal~kl~~~ 165 (555)
++|.+.++++|+++.||..|+.|++.+.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467888999999999999999999988753
No 84
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.78 E-value=0.0071 Score=64.89 Aligned_cols=163 Identities=17% Similarity=0.110 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHH-hcCC-CcchhHHHhh-hhcCC----CCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcC-CCCh
Q 008746 43 SKRELFKKVISYM-TIGI-DVSAVFGEMV-MCSAT----SDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK-DEDP 114 (555)
Q Consensus 43 ~k~~~l~kli~~~-~~G~-d~s~lf~~vi-~~~~s----~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~-~~n~ 114 (555)
+=.+++.-+=--. .-|+ .+-.-|..++ +..++ +|.++.+.+|+.+..+.-...+...--...+..-+. +|+|
T Consensus 869 df~da~~fikE~ElLyGeksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P 948 (1128)
T COG5098 869 DFVDAFFFIKEKELLYGEKSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIP 948 (1128)
T ss_pred HHHHHHHHHHHHHHhhchhHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCc
Confidence 3444543332222 2363 3333355555 45544 778899999999987765555554444455556665 9999
Q ss_pred HHHHHHHHHhcCCC--hhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHH
Q 008746 115 MIRGLALRSLCSLR--VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVV 192 (555)
Q Consensus 115 ~vr~lAL~~L~~i~--~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~ 192 (555)
.+|+.|.-.||.+. -.-+++.-...+-+.+.|.+..|||++.+.+.-+.-..--- ..+-...+..+ +.|+|.++.
T Consensus 949 ~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~K--VKGqlg~ma~~-L~deda~Is 1025 (1128)
T COG5098 949 RIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLK--VKGQLGKMALL-LTDEDAEIS 1025 (1128)
T ss_pred ceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHcccee--eccchhhhHhh-ccCCcchHH
Confidence 99999999999873 33444545555558899999999999999998776433222 25566667666 699999998
Q ss_pred HHHHHHHHHHHhhccc
Q 008746 193 ANCLSALQEIWSLEAS 208 (555)
Q Consensus 193 ~~a~~~L~~i~~~~~~ 208 (555)
--|=..+.++++.+-+
T Consensus 1026 dmar~fft~~a~KdNt 1041 (1128)
T COG5098 1026 DMARHFFTQIAKKDNT 1041 (1128)
T ss_pred HHHHHHHHHHHhcccc
Confidence 8888889999887654
No 85
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.73 E-value=0.58 Score=50.23 Aligned_cols=459 Identities=13% Similarity=0.058 Sum_probs=230.0
Q ss_pred CCCcchhHHHhh-hhcCCCCchhHHHHHHHHHHhcCCCChH---HH------HHHHHHHhHcCCC---ChHHHHHHHHHh
Q 008746 58 GIDVSAVFGEMV-MCSATSDIVLKKMCYLYVGNYAKVNPDL---AL------LTINFLQRDCKDE---DPMIRGLALRSL 124 (555)
Q Consensus 58 G~d~s~lf~~vi-~~~~s~~~~~Krl~yl~l~~~~~~~~e~---~~------l~in~l~kDL~~~---n~~vr~lAL~~L 124 (555)
||+... .+.|+ ..+.|+|.+.|+...++...+..-..+. .. +.-....+..... +..+. .+--.+
T Consensus 436 ~h~tre-~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~-~ttvil 513 (975)
T COG5181 436 CHDTRE-HMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVV-LTTVIL 513 (975)
T ss_pred hhhHHH-HHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceee-hhHHHH
Confidence 555554 44454 6889999999999999999987654432 11 0111111112111 11111 222223
Q ss_pred cC-CChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 008746 125 CS-LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (555)
Q Consensus 125 ~~-i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~ 203 (555)
++ .+++-+. .-+...++|+...-||-++-++-|++..-|.. ++-+.+.+++ - -+.+.++.+-.
T Consensus 514 Ak~~g~~~v~----~kil~~~~De~ep~r~m~a~~vsri~~~lg~~----~~dErleerl-~-------d~il~Afqeq~ 577 (975)
T COG5181 514 AKMGGDPRVS----RKILEYYSDEPEPYRKMNAGLVSRIFSRLGRL----GFDERLEERL-Y-------DSILNAFQEQD 577 (975)
T ss_pred HHHcCChHHH----HHHHhhccCCcchhhhhhhHHHHHHHHhcccc----cccHHHHHHH-H-------HHHHHHHHhcc
Confidence 33 3445544 44557788998888999999999998755543 3444554442 1 12223333321
Q ss_pred hhccccchH------hhhH-HhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCC-----ChhHHHHHHHHHHHHhc
Q 008746 204 SLEASTSEE------ASRE-REALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-----DSNEIFDIMNLLEDRLQ 271 (555)
Q Consensus 204 ~~~~~~~~~------~~~~-~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~-----~~~~~~~i~~~l~~~L~ 271 (555)
....-+ +. ...+ +..-...+++..+++.|....|-.+....++.+.+.+- +.++...+=..+-+.+.
T Consensus 578 ~t~~~i-l~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lg 656 (975)
T COG5181 578 TTVGLI-LPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLG 656 (975)
T ss_pred ccccEE-EecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcC
Confidence 110000 00 0000 00001134677777778888888887777765554311 22333333344445555
Q ss_pred cCchHHHHHHHHHHHHhcCCcch-----hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccccc--ccce-
Q 008746 272 HANGAVVLSTIKVFLHLTLSMTD-----VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFAS--DYKH- 343 (555)
Q Consensus 272 s~~~aV~~eai~~i~~l~~~~~~-----~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~--~~~~- 343 (555)
-..+-|+-..+++++.+...... ....++.++.+ .|.++..-+.-..+..+..++.+.|+.... .++.
T Consensus 657 e~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltP----ILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc 732 (975)
T COG5181 657 EDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTP----ILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRIC 732 (975)
T ss_pred cccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccH----hhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH
Confidence 56666655445544443321110 11223344433 344566666777777788888888885432 3321
Q ss_pred e---eeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhhc
Q 008746 344 F---YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEM 420 (555)
Q Consensus 344 f---~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~~~~i~~ll~ll~~ 420 (555)
| ..+.+-...|||-|.+-+..+...--=.+|+.-|++-+..-+..-|.-..-+|+..|+-- .--.++.+++.=-++
T Consensus 733 feLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~c-gpfsVlP~lm~dY~T 811 (975)
T COG5181 733 FELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYC-GPFSVLPTLMSDYET 811 (975)
T ss_pred HHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc-CchhhHHHHHhcccC
Confidence 1 123455578999999888777655555677777777776656666666666666666532 111244555443333
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhcccC--CCchHHHHHHHHHHhccccCCCC------hHHHHHHHHHh
Q 008746 421 EKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQN--VQEPKAKAALIWMLGEYSQDMQD------APYILESLTEN 492 (555)
Q Consensus 421 ~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~~wiiGEy~~~~~~------~~~~l~~l~~~ 492 (555)
..-.+.+-++.++.-..+.-.+...+.+..+.-++.+. ..++--|..+.-+|..-+-..+. ..-+++.+..+
T Consensus 812 Pe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpN 891 (975)
T COG5181 812 PEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPN 891 (975)
T ss_pred chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhh
Confidence 33344444444333222221222222222223333232 23444455555555332222221 22345555566
Q ss_pred hhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhccCCCcchhhccc
Q 008746 493 WEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQVVFYGFF 544 (555)
Q Consensus 493 ~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~~~~~d~d~evq~Ra~ 544 (555)
..+++ |.|...+..-+--+...-. ... +..-+.++.-.+...||.|.+
T Consensus 892 Ile~s-Phvi~~~~Eg~e~~~~~lg--~g~-~m~Yv~qGLFHPs~~VRk~yw 939 (975)
T COG5181 892 ILEPS-PHVIQSFDEGMESFATVLG--SGA-MMKYVQQGLFHPSSTVRKRYW 939 (975)
T ss_pred ccCCC-cHHHHHHHHHHHHHHHHhc--cHH-HHHHHHHhccCchHHHHHHHH
Confidence 66665 8888776654333322111 122 233334555555566666643
No 86
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.72 E-value=0.41 Score=53.84 Aligned_cols=404 Identities=13% Similarity=0.111 Sum_probs=209.5
Q ss_pred hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc
Q 008746 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (555)
Q Consensus 130 ~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~ 209 (555)
..+-..+.+...++.+|..|.||++++--++.+.+.-+.........+.+..+ .+|.--+|+.+|+..+..+.+--..
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L-~~DdqdsVr~~a~~~~~~l~~l~~~- 309 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQL-LRDDQDSVREAAVESLVSLLDLLDD- 309 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhh-hhcchhhHHHHHHHHHHHHHHhcCC-
Confidence 44556677777888999999999999999999887666655446677888887 5776678999999988887653211
Q ss_pred chHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHH----HHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHH
Q 008746 210 SEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLE----LVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVF 285 (555)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~----~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i 285 (555)
++ +..+ .....+++...+.+....-.+.+ +-..+.++ ............++.+.-..+.++.++-.
T Consensus 310 -----~~--d~~~-~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a~a~~~ 379 (759)
T KOG0211|consen 310 -----DD--DVVK-SLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPS--ATRTQLVPPVSNLLKDEEWEVRYAIAKKV 379 (759)
T ss_pred -----ch--hhhh-hhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccc--cCcccchhhHHHHhcchhhhhhHHhhcch
Confidence 10 1111 12333444444443222222222 11222221 11112334445555555555666666554
Q ss_pred HHhcCCcc--hhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCC--cccccccceee-eccCCcHHHHHHHHH
Q 008746 286 LHLTLSMT--DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP--FIFASDYKHFY-CQYNEPSYVKKLKLE 360 (555)
Q Consensus 286 ~~l~~~~~--~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p--~~~~~~~~~f~-~~~~dd~~Ir~~aL~ 360 (555)
..+..... .......+.+.+.+..++.+++..+|-.....+.-+....| ....+....+. ...++++.++.--.+
T Consensus 380 ~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~ 459 (759)
T KOG0211|consen 380 QKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLID 459 (759)
T ss_pred HHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHH
Confidence 33332211 00001112222334455556656665443333222222222 12222223332 346777778877775
Q ss_pred HHHHc---cCCCCHHHHHHHHHHHhhc----CCHHHHHHHHHHHHHHhcccC-cH--HHHHHHHHHHhhcccchhHHHHH
Q 008746 361 MLTAV---ANESNTYEIVTELCEYAAN----VDIPIARESIRAVGKIALQQY-DV--NAIVDRLLQFLEMEKDYVTAEAL 430 (555)
Q Consensus 361 iL~~l---~~~~N~~~Iv~eL~~y~~~----~d~~~~~~~i~~i~~la~~~~-~~--~~~i~~ll~ll~~~~~~v~~e~i 430 (555)
.+..+ ....++....+-++.-+.+ ..-..+.+++..|-.++...- .. ..+-..+..-+.+....+.+.+.
T Consensus 460 ~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa 539 (759)
T KOG0211|consen 460 KLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAA 539 (759)
T ss_pred HHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHH
Confidence 44332 2223444444444433322 233466778888877775532 21 12223333333333334555666
Q ss_pred HHHHHHHHhCCCCcchHHHHHhhhcccCCC-chHHHHHHHHHHhccccCCCC---hHHHHHHHHHhhhcCCcHHHHHHHH
Q 008746 431 VLVKDLLRKYPQWSHDCIAVVGSISSQNVQ-EPKAKAALIWMLGEYSQDMQD---APYILESLTENWEEEPSAEVRLHLL 506 (555)
Q Consensus 431 ~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~wiiGEy~~~~~~---~~~~l~~l~~~~~~e~~~~vr~~~L 506 (555)
..+..++..+. ..-.+..++.+++....+ +-..|.+.+.-+.+.+..... ..+++-.+ ..+..++.++||..++
T Consensus 540 ~~l~~l~~~~G-~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~-~~l~~D~vanVR~nva 617 (759)
T KOG0211|consen 540 RNLPALVETFG-SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVF-LDLVKDPVANVRINVA 617 (759)
T ss_pred HHhHHHHHHhC-cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHH-HHhccCCchhhhhhHH
Confidence 66776766655 111111233333311111 233456666666665554432 23333333 3345565589999988
Q ss_pred HHHHHHHhcC-CchhHHHHHHHHHHhccCCCcchhhcccccc
Q 008746 507 TAVMKCFFKR-PPETQKVLGAALAAGLADFHQVVFYGFFPPF 547 (555)
Q Consensus 507 ~a~~Kl~~~~-p~~~~~~l~~vl~~~~~d~d~evq~Ra~~~l 547 (555)
-.+-|+...- ++..+..+..++.....|.|.+||-||..-.
T Consensus 618 k~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~ 659 (759)
T KOG0211|consen 618 KHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAF 659 (759)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 8777764432 2345666777777777899999999986543
No 87
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.70 E-value=1.1 Score=50.70 Aligned_cols=445 Identities=14% Similarity=0.093 Sum_probs=232.0
Q ss_pred HHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHH-HHHHhcCCCCh-HHHHHHHHHHhHcCCCChHHHHHHHHHhc
Q 008746 48 FKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYL-YVGNYAKVNPD-LALLTINFLQRDCKDEDPMIRGLALRSLC 125 (555)
Q Consensus 48 l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl-~l~~~~~~~~e-~~~l~in~l~kDL~~~n~~vr~lAL~~L~ 125 (555)
+.+++..+..-.....+.+.+.++...+-++.|--+.- +...+....++ +-.-.-+..+.-.+|.+|.+|..+-+-+|
T Consensus 183 l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~ 262 (759)
T KOG0211|consen 183 LLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLG 262 (759)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhH
Confidence 43443333332233333444444444444444444433 33333333323 22244566777778999999999999999
Q ss_pred CCCh----hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc-ccCCCchHHHHHHHhcCCChHHHHHHHHHHH
Q 008746 126 SLRV----ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT-CIDADFPPTLKHLMLNDPDPQVVANCLSALQ 200 (555)
Q Consensus 126 ~i~~----~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~-~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~ 200 (555)
++.. ......+.+....+..|....||-.|.-++..+....... =....+.+.+... .+|++..|+......+.
T Consensus 263 ~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~-~~d~~~~v~~~~~~~~~ 341 (759)
T KOG0211|consen 263 NIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQA-VEDGSWRVSYMVADKFS 341 (759)
T ss_pred HHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHH-hcChhHHHHHHHhhhhh
Confidence 8743 3344567788888999999999998888888876544332 0124566777776 68999999888877777
Q ss_pred HHHhhccccchHhhhHH-hhhccHHHHHHHHhhcCCCChhH----HHHHHHHHHccCCCCh--h-HHHHHHHHHHHHhcc
Q 008746 201 EIWSLEASTSEEASRER-EALISKPVIYYLLNRIKEFSEWA----QCLVLELVAKYVPLDS--N-EIFDIMNLLEDRLQH 272 (555)
Q Consensus 201 ~i~~~~~~~~~~~~~~~-~~ll~~~~~~~L~~~l~~~~pw~----q~~iL~~L~~~~~~~~--~-~~~~i~~~l~~~L~s 272 (555)
++...=. ++. +....+ .+..++ ...+|. ...-.+-|..|.+.+. + -...+++.+..+..+
T Consensus 342 ~L~~~~~-------~~~~~~~~~~-~~~~l~----~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d 409 (759)
T KOG0211|consen 342 ELSSAVG-------PSATRTQLVP-PVSNLL----KDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD 409 (759)
T ss_pred hHHHHhc-------cccCcccchh-hHHHHh----cchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhc
Confidence 7654210 000 000111 122222 222232 2222333344432110 0 112345666667777
Q ss_pred CchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCc-----ccccccceeeec
Q 008746 273 ANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-----IFASDYKHFYCQ 347 (555)
Q Consensus 273 ~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~-----~~~~~~~~f~~~ 347 (555)
.+.-|.-..+..+..+.+..+. ...+.-+.+.+...+++..+.++-.....+.......+. .-+.++..+...
T Consensus 410 ~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el 487 (759)
T KOG0211|consen 410 NALHVRSALASVITGLSPILPK--ERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVEL 487 (759)
T ss_pred ccchHHHHHhccccccCccCCc--CcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhh
Confidence 7776766666655554432221 111222233344456666777777666655443332221 112233322222
Q ss_pred c-CCcHHHHHHHHHHHHHccCCCCHHHHHHHHH----HHhhcCCHHHHHHHHHHHHHHhcccCcHHHHHHHH-HHHhhcc
Q 008746 348 Y-NEPSYVKKLKLEMLTAVANESNTYEIVTELC----EYAANVDIPIARESIRAVGKIALQQYDVNAIVDRL-LQFLEME 421 (555)
Q Consensus 348 ~-~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~----~y~~~~d~~~~~~~i~~i~~la~~~~~~~~~i~~l-l~ll~~~ 421 (555)
. +..+.+|...++-+-.++...-..-.-+++. .|+.+...+++..+.+.+..++++|- ..|...++ -+++...
T Consensus 488 ~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~~~i~k~L~~~ 566 (759)
T KOG0211|consen 488 AEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWARLEEIPKLLAMD 566 (759)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhHHHhhHHHHHHh
Confidence 2 2237777777777776666554443333333 45555567899999999999999986 45644433 2223222
Q ss_pred cc--hhHH-HHHHHHHHHHHhCCC-C-cchHHHHHhhhcccCCCchHHHHHHHHHHhccccCCCC--hHHHHHHHHHhhh
Q 008746 422 KD--YVTA-EALVLVKDLLRKYPQ-W-SHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD--APYILESLTENWE 494 (555)
Q Consensus 422 ~~--~v~~-e~i~~i~~ii~~~~~-~-~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~--~~~~l~~l~~~~~ 494 (555)
++ +... .++..+..+..-... . .+..+.++.++. ....+.+|-.++..+--+...... ....+.-+...+.
T Consensus 567 ~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~--~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~ 644 (759)
T KOG0211|consen 567 LQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLV--KDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLS 644 (759)
T ss_pred cCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhc--cCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhc
Confidence 22 3322 223333333332221 1 112222333332 445677887777776555554432 3344555555555
Q ss_pred cCCcHHHHHHHHHHHH
Q 008746 495 EEPSAEVRLHLLTAVM 510 (555)
Q Consensus 495 ~e~~~~vr~~~L~a~~ 510 (555)
.+.+..+|..+..+.+
T Consensus 645 ~d~~~dvr~~a~~a~~ 660 (759)
T KOG0211|consen 645 SDQELDVRYRAILAFG 660 (759)
T ss_pred cCcccchhHHHHHHHH
Confidence 5544666666555443
No 88
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.57 E-value=1.9 Score=48.73 Aligned_cols=180 Identities=12% Similarity=0.061 Sum_probs=100.7
Q ss_pred HHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHh--cCCCcchhHHHhhhhcCC----CCchhHHHHHHHHHHhcCCCChH
Q 008746 24 DLKSQLRQLAGSRAPGIDDSKRELFKKVISYMT--IGIDVSAVFGEMVMCSAT----SDIVLKKMCYLYVGNYAKVNPDL 97 (555)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~--~G~d~s~lf~~vi~~~~s----~~~~~Krl~yl~l~~~~~~~~e~ 97 (555)
.|=+.|.....+++-.....+-..+..++.-.= ++..+..+.+.|+.-++. ++...--+++++.....+ .|+.
T Consensus 435 ~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~-~p~~ 513 (1233)
T KOG1824|consen 435 LIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISH-PPEV 513 (1233)
T ss_pred HHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcC-Chhh
Confidence 333444443333443233455566666665443 235666678888765542 333334445555444433 2331
Q ss_pred ----HHHHHHHHHhHcCCCChHHHHHHHHHhcCC-------------ChhhhHHHHHHHHhhcc--CCCChHHHHHHHHH
Q 008746 98 ----ALLTINFLQRDCKDEDPMIRGLALRSLCSL-------------RVANLVEYLVGPLGLGL--KDNNSYVRTVAVIG 158 (555)
Q Consensus 98 ----~~l~in~l~kDL~~~n~~vr~lAL~~L~~i-------------~~~ei~~~l~~~i~~~l--~d~~~~VRk~A~la 158 (555)
.-..+.-+.....++=+.+-+.||.+.+.+ ..+..+..++....+.+ +|.+-.||-.|+.|
T Consensus 514 fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIsc 593 (1233)
T KOG1824|consen 514 FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISC 593 (1233)
T ss_pred cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 112223444556777788888898888764 11223334444444443 57889999999999
Q ss_pred HHHHhhhCCCccc--CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 008746 159 VLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 159 l~kl~~~~p~~~~--~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~ 207 (555)
++.+.-...+... -+...+.+.+.+ ++...+..|+.+++.|.....
T Consensus 594 mgq~i~~fgD~l~~eL~~~L~il~eRl---~nEiTRl~AvkAlt~Ia~S~l 641 (1233)
T KOG1824|consen 594 MGQIIANFGDFLGNELPRTLPILLERL---GNEITRLTAVKALTLIAMSPL 641 (1233)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHH---hchhHHHHHHHHHHHHHhccc
Confidence 9998654444331 023333444443 455678899999999876543
No 89
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=3 Score=49.61 Aligned_cols=198 Identities=14% Similarity=0.071 Sum_probs=106.5
Q ss_pred HHHHHHhhccCCC-ChHHHHHHHHHHHHHhhhCCCccc--CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccch
Q 008746 135 YLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (555)
Q Consensus 135 ~l~~~i~~~l~d~-~~~VRk~A~lal~kl~~~~p~~~~--~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~ 211 (555)
+++.-..++.+|+ .-.=||-||.++..+.....+... -+.++|+|.+- -.|+|+.|+.+-......+..+....
T Consensus 956 dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY-~yDP~~~Vq~aM~sIW~~Li~D~k~~-- 1032 (1702)
T KOG0915|consen 956 DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRY-QYDPDKKVQDAMTSIWNALITDSKKV-- 1032 (1702)
T ss_pred HHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhh-ccCCcHHHHHHHHHHHHHhccChHHH--
Confidence 3445556777776 356788999999999876654431 04577888887 68999999888776666655432211
Q ss_pred HhhhHHhhhccHHHHHHHHhhcCCCChh-HHHHHHHHHHccC--CCChhHHHHHHHHHHHHhcc---CchHHHHHHHH--
Q 008746 212 EASREREALISKPVIYYLLNRIKEFSEW-AQCLVLELVAKYV--PLDSNEIFDIMNLLEDRLQH---ANGAVVLSTIK-- 283 (555)
Q Consensus 212 ~~~~~~~~ll~~~~~~~L~~~l~~~~pw-~q~~iL~~L~~~~--~~~~~~~~~i~~~l~~~L~s---~~~aV~~eai~-- 283 (555)
....+ ..++..|+..+.+ .+| .+..-.-.|..+. +...+...++-+.....++- --.+|+-.|-+
T Consensus 1033 -----vd~y~-neIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~ 1105 (1702)
T KOG0915|consen 1033 -----VDEYL-NEILDELLVNLTS-KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAA 1105 (1702)
T ss_pred -----HHHHH-HHHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 1244555554433 456 3333333333332 22222233333333333332 12344332222
Q ss_pred -HHHH----hcCC-cchhHHHHHHHHHHHHH--HHhcCCCchhHHHHHHHHHHHHhhCCcccccccce
Q 008746 284 -VFLH----LTLS-MTDVHQQVYERIKAPLL--TLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKH 343 (555)
Q Consensus 284 -~i~~----l~~~-~~~~~~~~l~~i~~~L~--~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~ 343 (555)
++.+ +... .+.-..++++-+-++|. ..+ ++-+++|-.++..+..++...|....||.-.
T Consensus 1106 ~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~ 1172 (1702)
T KOG0915|consen 1106 RALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPK 1172 (1702)
T ss_pred HHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhH
Confidence 2222 2111 11122444554444432 223 5778899999999999999998888888753
No 90
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=2.1 Score=50.78 Aligned_cols=301 Identities=13% Similarity=0.064 Sum_probs=167.2
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHhcC-CC-cchhHHHhh----hhcCCCCchhHHHHHHHHHHhcCCCChH-----HHHH
Q 008746 33 AGSRAPGIDDSKRELFKKVISYMTIG-ID-VSAVFGEMV----MCSATSDIVLKKMCYLYVGNYAKVNPDL-----ALLT 101 (555)
Q Consensus 33 ~~~~~~~~~~~k~~~l~kli~~~~~G-~d-~s~lf~~vi----~~~~s~~~~~Krl~yl~l~~~~~~~~e~-----~~l~ 101 (555)
-..|++++ .+-..+|.-+--..... .. ++.+|.+|. ..++++...+|--.++++..+.+..|.. +.-.
T Consensus 1004 yRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpel 1082 (1702)
T KOG0915|consen 1004 YRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPEL 1082 (1702)
T ss_pred hhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 44555554 45566777666555544 33 455777875 3578899999999999999998876532 1111
Q ss_pred HHHHHhHcCCCChHHHH---HHHHHhcCCC-----------hhhhHHHHHHHHh-hccCCCChHHHHHHHHHHHHHhhhC
Q 008746 102 INFLQRDCKDEDPMIRG---LALRSLCSLR-----------VANLVEYLVGPLG-LGLKDNNSYVRTVAVIGVLKLYHIS 166 (555)
Q Consensus 102 in~l~kDL~~~n~~vr~---lAL~~L~~i~-----------~~ei~~~l~~~i~-~~l~d~~~~VRk~A~lal~kl~~~~ 166 (555)
=-++-+-+.|--+.+|- .|.+++++++ ..+++..+.|++. +...++-+.||+.++-.+.++.+.+
T Consensus 1083 w~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1083 WEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhc
Confidence 12233333444566665 4577787763 2467777888877 4455889999999999999999988
Q ss_pred CCccc--CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHh------------hcccc-chHhhhHHhhh-ccHHHHHHHH
Q 008746 167 APTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWS------------LEAST-SEEASREREAL-ISKPVIYYLL 230 (555)
Q Consensus 167 p~~~~--~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~------------~~~~~-~~~~~~~~~~l-l~~~~~~~L~ 230 (555)
|..+. -+++++.+.+. .++-.|.|..-...=+.++.. ..|.. ..+.|....+. .--+.+++++
T Consensus 1163 g~~lkP~~~~LIp~ll~~-~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~ 1241 (1702)
T KOG0915|consen 1163 GKELKPHFPKLIPLLLNA-YSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLT 1241 (1702)
T ss_pred hhhhcchhhHHHHHHHHH-ccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77651 14555666665 466677776432222232211 11100 00112111100 0001222333
Q ss_pred hh------cCC---CChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHH
Q 008746 231 NR------IKE---FSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE 301 (555)
Q Consensus 231 ~~------l~~---~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~ 301 (555)
+. ++. ++-+.-....++.....| ..-+++.++.+-+++.|++|....+.+.+++....+.- ++.+
T Consensus 1242 el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP----~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~d--q~qK 1315 (1702)
T KOG0915|consen 1242 ELVRGSVGLGTKVGCASFISLLVQRLGSEMTP----YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPD--QMQK 1315 (1702)
T ss_pred HHHhccCCCCcchhHHHHHHHHHHHhccccCc----chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChH--HHHH
Confidence 22 111 222222222222222222 23468888888999999999999999998887654321 1212
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccc
Q 008746 302 RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK 342 (555)
Q Consensus 302 ~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~ 342 (555)
.+...+.-++.. ++..+-++...+..+....++.+..|.+
T Consensus 1316 Lie~~l~~~l~k-~es~~siscatis~Ian~s~e~Lkn~as 1355 (1702)
T KOG0915|consen 1316 LIETLLADLLGK-DESLKSISCATISNIANYSQEMLKNYAS 1355 (1702)
T ss_pred HHHHHHHHHhcc-CCCccchhHHHHHHHHHhhHHHHHhhHH
Confidence 222222333433 3333355555555566666677777665
No 91
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.30 E-value=0.087 Score=54.64 Aligned_cols=160 Identities=16% Similarity=0.238 Sum_probs=100.5
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcch--hHHHh----hhhcCC-CCchhHHHHHHHHH
Q 008746 16 PSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSA--VFGEM----VMCSAT-SDIVLKKMCYLYVG 88 (555)
Q Consensus 16 ~~~~~e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~--lf~~v----i~~~~s-~~~~~Krl~yl~l~ 88 (555)
|-.--...-++..|.+..++ +..+.++.++..++.++.-|----| .|.++ .+.++. .++..|+++.-.+.
T Consensus 279 p~~~~~~~~v~~~l~~~~g~---e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~ 355 (516)
T KOG2956|consen 279 PNSVDQSALVADLLKEISGS---ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLR 355 (516)
T ss_pred CCCcchhHHHHHHHHhccCc---cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Confidence 33334456677777776554 3346899999999999998854444 47665 455544 88999999999888
Q ss_pred HhcCCCChH----HHHHHHHHHhHcCCCChHHHHH-----------------------------------HHHHhcCC--
Q 008746 89 NYAKVNPDL----ALLTINFLQRDCKDEDPMIRGL-----------------------------------ALRSLCSL-- 127 (555)
Q Consensus 89 ~~~~~~~e~----~~l~in~l~kDL~~~n~~vr~l-----------------------------------AL~~L~~i-- 127 (555)
......|.- .-++|-.+...-.|+++.+... +|+++..+
T Consensus 356 ~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 356 EMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFE 435 (516)
T ss_pred HHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHh
Confidence 877666542 2345555555445544433332 23233222
Q ss_pred --Chhh---hHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHH
Q 008746 128 --RVAN---LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL 182 (555)
Q Consensus 128 --~~~e---i~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~l 182 (555)
...+ +++.+.|.+.++..+.+..|||+|+.|+.-++..-. ..++.+.|..+
T Consensus 436 ~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG----~~~mePhL~~L 491 (516)
T KOG2956|consen 436 RLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG----MEEMEPHLEQL 491 (516)
T ss_pred hcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh----HHhhhhHhhhc
Confidence 1122 456677777788888888888888888888876433 13455666554
No 92
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.28 E-value=0.019 Score=55.15 Aligned_cols=92 Identities=22% Similarity=0.213 Sum_probs=74.4
Q ss_pred HHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHH
Q 008746 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (555)
Q Consensus 100 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l 179 (555)
-+||.|-..+.++...+|.-+.-++|.+.+|.-++.+...+.. ...+|+||.-|+-|++.+.. ++.++.|
T Consensus 187 eaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d--~~E~pMVRhEaAeALGaIa~--------e~~~~vL 256 (289)
T KOG0567|consen 187 EAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLD--ETEHPMVRHEAAEALGAIAD--------EDCVEVL 256 (289)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHh--hhcchHHHHHHHHHHHhhcC--------HHHHHHH
Confidence 3569999999999999999999999999999876655533333 33589999999999998852 5677889
Q ss_pred HHHHhcCCChHHHHHHHHHHHHH
Q 008746 180 KHLMLNDPDPQVVANCLSALQEI 202 (555)
Q Consensus 180 ~~lll~d~d~~V~~~a~~~L~~i 202 (555)
++. ++|.++.|+-++..+|...
T Consensus 257 ~e~-~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 257 KEY-LGDEERVVRESCEVALDML 278 (289)
T ss_pred HHH-cCCcHHHHHHHHHHHHHHH
Confidence 998 6999999998888777544
No 93
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.16 E-value=2.4 Score=45.43 Aligned_cols=353 Identities=10% Similarity=0.078 Sum_probs=176.3
Q ss_pred HHHHHHhhccCC--C-----ChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 008746 135 YLVGPLGLGLKD--N-----NSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 135 ~l~~~i~~~l~d--~-----~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~ 207 (555)
.++|.+.++|.. + +-.+-++|..|+--+.+...+.+.+| ....+..- +..+|..-+-+|+.++..+.. .|
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqn-i~~~~w~nreaavmAfGSvm~-gp 397 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQN-IRSESWANREAAVMAFGSVMH-GP 397 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHh-ccCchhhhHHHHHHHhhhhhc-Cc
Confidence 355666666642 2 33677777777666556665554322 33444444 456677788899999988753 23
Q ss_pred ccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCC-----ChhHHHHHHHHHHHHhc--cCchHHHHH
Q 008746 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-----DSNEIFDIMNLLEDRLQ--HANGAVVLS 280 (555)
Q Consensus 208 ~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~-----~~~~~~~i~~~l~~~L~--s~~~aV~~e 280 (555)
|.+....+-++.+..+.+..+++.=|..-..-..+.+.... +|. .++...+...+. ..+|-+...
T Consensus 398 ------~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~--~Hl~~~vsa~liGl~D~p~~~~n 469 (858)
T COG5215 398 ------CEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPC--GHLVLEVSASLIGLMDCPFRSIN 469 (858)
T ss_pred ------cHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCcc--ccccHHHHHHHhhhhccchHHhh
Confidence 22222112224556666666665555544433333333211 111 011111111111 123334444
Q ss_pred HHHHHH----HhcCCc---chhHHHHHHHHHHHHHHH--hcCCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCc
Q 008746 281 TIKVFL----HLTLSM---TDVHQQVYERIKAPLLTL--VSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEP 351 (555)
Q Consensus 281 ai~~i~----~l~~~~---~~~~~~~l~~i~~~L~~l--l~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~~~~~dd 351 (555)
|...+. ++.+.. +..--..+..+.+.|+.- +..++.|.|-.+...+..++...|+.+.+-+-.|+
T Consensus 470 csw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~------ 543 (858)
T COG5215 470 CSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFY------ 543 (858)
T ss_pred hHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHH------
Confidence 444433 333221 111111222333444322 22477899999999999999888876655443332
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCc----HH-HHHHHHHHHhhcc-cchh
Q 008746 352 SYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD----VN-AIVDRLLQFLEME-KDYV 425 (555)
Q Consensus 352 ~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~----~~-~~i~~ll~ll~~~-~~~v 425 (555)
.+-.+||+--..+ .+|+-..=+.+. -.++....+..+..+..+++. .. -.++.++++++.. ...+
T Consensus 544 -~~~~~kl~~~isv--~~q~l~~eD~~~------~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~ 614 (858)
T COG5215 544 -DYTSKKLDECISV--LGQILATEDQLL------VEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTA 614 (858)
T ss_pred -HHHHHHHHHHHHH--hhhhhhhHHHHH------HHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchh
Confidence 1334445433332 111111101100 123444444445444445432 22 2667777888776 3455
Q ss_pred HHHHHHHHHHHHHhCCCCcc----hHHHHHhhhcccCCCchHHHHHHHHHHhccccCCCC-----hHHHHHHHHHhhhcC
Q 008746 426 TAEALVLVKDLLRKYPQWSH----DCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD-----APYILESLTENWEEE 496 (555)
Q Consensus 426 ~~e~i~~i~~ii~~~~~~~~----~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~-----~~~~l~~l~~~~~~e 496 (555)
-.++...+-.+...-.+..+ ..+..+.+-+ ..++..+..+++-++|.-++.... +..++..+.+....+
T Consensus 615 ~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al--n~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 615 FGDVYTAISALSTSLEERFEQYASKFIPYLTRAL--NCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSE 692 (858)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh--cchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCh
Confidence 66777776666553222211 1122232222 455667777888888887765531 445566666665444
Q ss_pred -CcHHHHHHHHHHHHHHHhc
Q 008746 497 -PSAEVRLHLLTAVMKCFFK 515 (555)
Q Consensus 497 -~~~~vr~~~L~a~~Kl~~~ 515 (555)
...++|=.+|+-++-+...
T Consensus 693 ~~~R~lKPaiLSvFgDIAla 712 (858)
T COG5215 693 ATHRDLKPAILSVFGDIALA 712 (858)
T ss_pred hhccccchHHHHHHHHHHHH
Confidence 1256777888877777554
No 94
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=96.11 E-value=0.065 Score=59.44 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=72.8
Q ss_pred HHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHH
Q 008746 103 NFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL 182 (555)
Q Consensus 103 n~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~l 182 (555)
+.+.+..+..+...+-++|++|||++.+..+..+.+.+. .-...++++|..|+.|+.++...+|+.+ .+.+...
T Consensus 449 ~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v-----~~~l~~i 522 (574)
T smart00638 449 ELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKV-----QEVLLPI 522 (574)
T ss_pred HHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHH-----HHHHHHH
Confidence 344445556788889999999999999999998887776 3345678999999999999987788764 3444444
Q ss_pred H-hcCCChHHHHHHHHHHHHH
Q 008746 183 M-LNDPDPQVVANCLSALQEI 202 (555)
Q Consensus 183 l-l~d~d~~V~~~a~~~L~~i 202 (555)
. ..+.++.||.+|+.+|...
T Consensus 523 ~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 523 YLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HcCCCCChHHHHHHHHHHHhc
Confidence 2 3468899999999988875
No 95
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.09 E-value=0.085 Score=59.52 Aligned_cols=137 Identities=21% Similarity=0.175 Sum_probs=100.1
Q ss_pred hHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhH---------cCC---CChHHHHHHHHHhcCCCh--
Q 008746 64 VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRD---------CKD---EDPMIRGLALRSLCSLRV-- 129 (555)
Q Consensus 64 lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kD---------L~~---~n~~vr~lAL~~L~~i~~-- 129 (555)
.||-|+|+++|+-.++|-+.-.-|..++.-+|.-.. -|.|| |.+ -++.-|++|.=.|+.+..
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~----dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA----DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH----HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 499999999999999999888888777766654322 22333 222 246889999888887632
Q ss_pred ----hh-hHHHHHHHHhhccCC-CChHHHHHHHHHHHHHhhhCCCcc---cCCCchHHHHHHHhcCCChHHHHHHHHHHH
Q 008746 130 ----AN-LVEYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQ 200 (555)
Q Consensus 130 ----~e-i~~~l~~~i~~~l~d-~~~~VRk~A~lal~kl~~~~p~~~---~~~~~~~~l~~lll~d~d~~V~~~a~~~L~ 200 (555)
.+ +-..++..-...++| +.|..|...++|+++++..+++.- .+....++|..+ +.|+-|.|+++|+.+|.
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~-LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL-LSDPVPEVRAAAVFALG 667 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH-hcCccHHHHHHHHHHHH
Confidence 11 222344444566777 479999999999999999887753 124566788887 69999999999999999
Q ss_pred HHHhh
Q 008746 201 EIWSL 205 (555)
Q Consensus 201 ~i~~~ 205 (555)
.....
T Consensus 668 tfl~~ 672 (1387)
T KOG1517|consen 668 TFLSN 672 (1387)
T ss_pred HHhcc
Confidence 88653
No 96
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.80 E-value=3.4 Score=44.27 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=54.0
Q ss_pred HHHhHcCCCChHHHHHHHHHhcCCCh-h------hhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc
Q 008746 104 FLQRDCKDEDPMIRGLALRSLCSLRV-A------NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (555)
Q Consensus 104 ~l~kDL~~~n~~vr~lAL~~L~~i~~-~------ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~ 170 (555)
.+.+.++++|+.-|..|..++|++.. | -+++...|.|....+|+.-.|+-+++.|++++...-|+.+
T Consensus 370 FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i 443 (858)
T COG5215 370 FVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMII 443 (858)
T ss_pred HHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhc
Confidence 34457789999999999999999733 2 3677788889999999999999999999999876555444
No 97
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.71 E-value=0.035 Score=59.80 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=95.3
Q ss_pred CChHHHHHHHHHhcCC--ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCCh
Q 008746 112 EDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDP 189 (555)
Q Consensus 112 ~n~~vr~lAL~~L~~i--~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~ 189 (555)
.++....+|-.+++.. .-|++.+..+..+..+..|.+.-||+.|+-++..+++.+|+.+ +...+.|..+ +...|+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v--~kvaDvL~Ql-L~tdd~ 110 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV--SKVADVLVQL-LQTDDP 110 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H--HHHHHHHHHH-TT---H
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH--hHHHHHHHHH-HhcccH
Confidence 4677888888888886 5689999999999999999999999999999999999888877 7788888887 577788
Q ss_pred HHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcC---CCChhHHHHHHHHHHccCCC------C-hhHH
Q 008746 190 QVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK---EFSEWAQCLVLELVAKYVPL------D-SNEI 259 (555)
Q Consensus 190 ~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~---~~~pw~q~~iL~~L~~~~~~------~-~~~~ 259 (555)
..+..+-.+|..+.+.+|.. .+.-++..+. ..++-.+.++|++|...... + .+|.
T Consensus 111 ~E~~~v~~sL~~ll~~d~k~---------------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~ 175 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPKG---------------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEM 175 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HHH---------------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHH
T ss_pred HHHHHHHHHHHHHHhcCcHH---------------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHH
Confidence 88888888888888776631 3333444432 45677888888888543211 1 1233
Q ss_pred -HHHHHHHHHHhccCc
Q 008746 260 -FDIMNLLEDRLQHAN 274 (555)
Q Consensus 260 -~~i~~~l~~~L~s~~ 274 (555)
..+.+.+...|++..
T Consensus 176 e~~i~~~ikkvL~DVT 191 (556)
T PF05918_consen 176 EEFIVDEIKKVLQDVT 191 (556)
T ss_dssp HHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHHhcc
Confidence 334456666676533
No 98
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.22 Score=54.04 Aligned_cols=157 Identities=18% Similarity=0.177 Sum_probs=103.7
Q ss_pred HHHHHHHH-hcCCCChHHH-HHHHHHHhHcCCCChHHHHHHHHHhcCC---Chhhh--------HHHHHHHHhhccCCCC
Q 008746 82 MCYLYVGN-YAKVNPDLAL-LTINFLQRDCKDEDPMIRGLALRSLCSL---RVANL--------VEYLVGPLGLGLKDNN 148 (555)
Q Consensus 82 l~yl~l~~-~~~~~~e~~~-l~in~l~kDL~~~n~~vr~lAL~~L~~i---~~~ei--------~~~l~~~i~~~l~d~~ 148 (555)
++|..=.. .-+.-.++.. |.-..+-+.|+-+|..||+.|+..+-+. .+|+. ++--...+.++|.|+-
T Consensus 154 l~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~ 233 (1005)
T KOG1949|consen 154 LSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPY 233 (1005)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44544444 3333344433 6677888999999999999999888774 44443 4444566778899999
Q ss_pred hHHHHHHHHHHHHHhhhCCCcccC---CCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHH
Q 008746 149 SYVRTVAVIGVLKLYHISAPTCID---ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPV 225 (555)
Q Consensus 149 ~~VRk~A~lal~kl~~~~p~~~~~---~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~ 225 (555)
|.||..|+..+.|++..+=+.+.. .++...+..-+-.|+...|+.+.+..+.++..... |.. .
T Consensus 234 p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~------sh~--------~ 299 (1005)
T KOG1949|consen 234 PMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL------SHP--------L 299 (1005)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc------chh--------H
Confidence 999999999999987655333311 23333333333567888999999999999876432 222 3
Q ss_pred HHHHHhh----cCCCChhHHHHHHHHHHccC
Q 008746 226 IYYLLNR----IKEFSEWAQCLVLELVAKYV 252 (555)
Q Consensus 226 ~~~L~~~----l~~~~pw~q~~iL~~L~~~~ 252 (555)
+..++.+ +.+.++-.++...++|-+..
T Consensus 300 le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 300 LEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 4444443 34566777777777766653
No 99
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.43 Score=52.25 Aligned_cols=122 Identities=19% Similarity=0.030 Sum_probs=58.7
Q ss_pred hhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHh-HcCCCChHHHHHHHHHhcCC--ChhhhHHHHHHHHhhccC-
Q 008746 70 MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQR-DCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLK- 145 (555)
Q Consensus 70 ~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~k-DL~~~n~~vr~lAL~~L~~i--~~~ei~~~l~~~i~~~l~- 145 (555)
+++.++|+-+|+-|-+.+..-.-..... =+|-.+.. ...|.|..||..|..+||=+ ++|+.++.. ..+|+
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~GTgnn--kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~----V~lLse 599 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVGTGNN--KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPST----VSLLSE 599 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhccCch--hhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHH----HHHHhh
Confidence 3455555555555555443322111111 11112222 23556666666666666654 445443322 23333
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHH
Q 008746 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (555)
Q Consensus 146 d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i 202 (555)
+-||+||--||+|++-.+.-... ...++.|..+ .+|+...|+.+|+.++.-|
T Consensus 600 s~N~HVRyGaA~ALGIaCAGtG~----~eAi~lLepl-~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 600 SYNPHVRYGAAMALGIACAGTGL----KEAINLLEPL-TSDPVDFVRQGALIALAMI 651 (929)
T ss_pred hcChhhhhhHHHHHhhhhcCCCc----HHHHHHHhhh-hcChHHHHHHHHHHHHHHH
Confidence 33666666666666655432111 3345555555 3666666666666655544
No 100
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.55 E-value=2.7 Score=50.08 Aligned_cols=161 Identities=11% Similarity=0.115 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcH--HHHHHH---HHHHhhcccch
Q 008746 352 SYVKKLKLEMLTAV--ANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV--NAIVDR---LLQFLEMEKDY 424 (555)
Q Consensus 352 ~~Ir~~aL~iL~~l--~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~--~~~i~~---ll~ll~~~~~~ 424 (555)
.+++..--++++.+ +.+.-+-.|+++|...+.+.+.++|.+++..+|++-...... ..+-++ .+.-+......
T Consensus 236 ~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~ 315 (1266)
T KOG1525|consen 236 SSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVE 315 (1266)
T ss_pred cchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChh
Confidence 45667777788876 455556678899988888889999999999999876543221 112222 22333334456
Q ss_pred hHHHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCCchHHHHHHHHHHhc--cccCC-CChHHHHHHHHHhhhcCCcHHH
Q 008746 425 VTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGE--YSQDM-QDAPYILESLTENWEEEPSAEV 501 (555)
Q Consensus 425 v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGE--y~~~~-~~~~~~l~~l~~~~~~e~~~~v 501 (555)
|.-+++....+.+..+|+..+.. .+...+. .-..|+..+....-+++. ..... ...+.++..+.++..+.. ..|
T Consensus 316 vR~~~v~~~~~~l~~~~~~~~~~-~~~~~l~-~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk-~~V 392 (1266)
T KOG1525|consen 316 VRMECVESIKQCLLNNPSIAKAS-TILLALR-ERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKK-IKV 392 (1266)
T ss_pred hhhhHHHHhHHHHhcCchhhhHH-HHHHHHH-hhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhh-HHH
Confidence 77788888888898889876542 2222221 222344443322222221 11111 112338888888888888 999
Q ss_pred HHHHHHHHHHHHhc
Q 008746 502 RLHLLTAVMKCFFK 515 (555)
Q Consensus 502 r~~~L~a~~Kl~~~ 515 (555)
|.+++.-++++|-+
T Consensus 393 R~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 393 RKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999985
No 101
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.19 Score=54.85 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=82.3
Q ss_pred HHHHhcCCCcchhHHHhhhhcCCCC-chhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcC--C-
Q 008746 52 ISYMTIGIDVSAVFGEMVMCSATSD-IVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCS--L- 127 (555)
Q Consensus 52 i~~~~~G~d~s~lf~~vi~~~~s~~-~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~--i- 127 (555)
+.+.|+|.--...+-+....-.-.. -.++|=.-+.+........|.+= +-+..-+.|.||..|....-+++. .
T Consensus 473 MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad---~lI~el~~dkdpilR~~Gm~t~alAy~G 549 (929)
T KOG2062|consen 473 MGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDAD---PLIKELLRDKDPILRYGGMYTLALAYVG 549 (929)
T ss_pred hhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhH---HHHHHHhcCCchhhhhhhHHHHHHHHhc
Confidence 4456667655555666655443333 33555444433333222223222 344444566789998644333322 1
Q ss_pred -ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 008746 128 -RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 128 -~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~ 204 (555)
++-..+..+. -=..+|.|..|||+|+.|++=+.-.+|+.+ +....+|-..-||.|+..|..+|.-.|.
T Consensus 550 Tgnnkair~lL---h~aVsD~nDDVrRaAVialGFVl~~dp~~~------~s~V~lLses~N~HVRyGaA~ALGIaCA 618 (929)
T KOG2062|consen 550 TGNNKAIRRLL---HVAVSDVNDDVRRAAVIALGFVLFRDPEQL------PSTVSLLSESYNPHVRYGAAMALGIACA 618 (929)
T ss_pred cCchhhHHHhh---cccccccchHHHHHHHHHheeeEecChhhc------hHHHHHHhhhcChhhhhhHHHHHhhhhc
Confidence 2222222222 123689999999999999998887788776 4444554456799999999998876554
No 102
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=1.8 Score=43.11 Aligned_cols=239 Identities=14% Similarity=0.155 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHhcCCCc-chhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCC-----hHHHHHHHHHHhHc----CCCC
Q 008746 44 KRELFKKVISYMTIGIDV-SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNP-----DLALLTINFLQRDC----KDED 113 (555)
Q Consensus 44 k~~~l~kli~~~~~G~d~-s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~-----e~~~l~in~l~kDL----~~~n 113 (555)
+..++.++...+ .|..+ ..+.+..-.-+-.+|-.+|.+.+-.+..+.+... ++.+.+-|.+.+-+ -..|
T Consensus 63 cVscLERLfkak-egahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 63 CVSCLERLFKAK-EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred HHHHHHHHHhhc-cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 566676755544 56544 4445554444556778888888888777765433 23233345566543 4578
Q ss_pred hHHHHHHHHHhcCCC-hhhhHHHHHHH-------HhhccCCCChHHHHHHHHHHHHHhhhCCCcc---cCCCchHHHHHH
Q 008746 114 PMIRGLALRSLCSLR-VANLVEYLVGP-------LGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHL 182 (555)
Q Consensus 114 ~~vr~lAL~~L~~i~-~~ei~~~l~~~-------i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~---~~~~~~~~l~~l 182 (555)
..+-..|+.++.++. .|+-.+.+.+. +.++..-.+..+|-...--+.+++..+|+.. ....+.+.|..-
T Consensus 142 deVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaE 221 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAE 221 (524)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHH
Confidence 888889999998873 34433333221 1122223467788888888999999988865 235677777666
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcC--CCChhHHHHHHHHHHccCCC------
Q 008746 183 MLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK--EFSEWAQCLVLELVAKYVPL------ 254 (555)
Q Consensus 183 ll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~--~~~pw~q~~iL~~L~~~~~~------ 254 (555)
|-.-.|..|+.+.+.+..++...+-+ +..+.+...+..+++.+. +.+||...+.|-.+.++...
T Consensus 222 lkGteDtLVianciElvteLaeteHg--------reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdv 293 (524)
T KOG4413|consen 222 LKGTEDTLVIANCIELVTELAETEHG--------REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDV 293 (524)
T ss_pred hcCCcceeehhhHHHHHHHHHHHhhh--------hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhc
Confidence 54558999999999999998765432 222333335666777664 46899888666666665422
Q ss_pred ChhH-HHHHH---HHHHHHhccCchHHHHHHHHHHHHhcCC
Q 008746 255 DSNE-IFDIM---NLLEDRLQHANGAVVLSTIKVFLHLTLS 291 (555)
Q Consensus 255 ~~~~-~~~i~---~~l~~~L~s~~~aV~~eai~~i~~l~~~ 291 (555)
.++. ...++ +-..+...++++.-.-.|+.++..++..
T Consensus 294 seeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 294 SEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred CHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 1111 12222 2223445667777777788888777654
No 103
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.42 E-value=0.0056 Score=44.68 Aligned_cols=53 Identities=26% Similarity=0.216 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHhhhCCCccc--CCCchHHHHHHHhcCCChHHHHHHHHHHHHH
Q 008746 149 SYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (555)
Q Consensus 149 ~~VRk~A~lal~kl~~~~p~~~~--~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i 202 (555)
|.||..|+.+++.+....++... .++.++.|..+ ++|+++.|+.+|+.+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~-L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPL-LQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHH-TTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHhcC
Confidence 67999999999987655544431 14567777777 5888999999999988643
No 104
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.38 E-value=0.94 Score=48.48 Aligned_cols=123 Identities=22% Similarity=0.223 Sum_probs=80.5
Q ss_pred CCchhHHHHHH--HHHHhcCCCChHHHHHH---HHHHhHcCCCChHHHHHHHHHhcCCCh------hhhHHHHHHHHhhc
Q 008746 75 SDIVLKKMCYL--YVGNYAKVNPDLALLTI---NFLQRDCKDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGLG 143 (555)
Q Consensus 75 ~~~~~Krl~yl--~l~~~~~~~~e~~~l~i---n~l~kDL~~~n~~vr~lAL~~L~~i~~------~ei~~~l~~~i~~~ 143 (555)
+....|-+-++ ++.-....+|+..-++- -.+.+.+.+++-.||-..+..++-+.+ ..+...+...+.+.
T Consensus 61 ~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R 140 (885)
T COG5218 61 PSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSER 140 (885)
T ss_pred CCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33444444444 22223455677544444 445567788888888777766665422 45666677777777
Q ss_pred cCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHH
Q 008746 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSAL 199 (555)
Q Consensus 144 l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L 199 (555)
+-|..+.||..|+.|+.++-...-+- +......+...+.+|++..|+.+|+.-+
T Consensus 141 ~~DRE~~VR~eAv~~L~~~Qe~~~ne--en~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 141 LFDREKAVRREAVKVLCYYQEMELNE--ENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 88999999999999999876432221 1345567777777899999999986543
No 105
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=6.1 Score=44.06 Aligned_cols=150 Identities=18% Similarity=0.208 Sum_probs=85.4
Q ss_pred CCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcC-CChHHHHHHHHHHHHHHhhccccc----hHhhhHH--
Q 008746 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND-PDPQVVANCLSALQEIWSLEASTS----EEASRER-- 217 (555)
Q Consensus 145 ~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d-~d~~V~~~a~~~L~~i~~~~~~~~----~~~~~~~-- 217 (555)
+..-+.=||.|+.++-.+.++|.+.+...++.+.+..+ -.| .|+..+..++-.+.-+..++..+- .....+.
T Consensus 33 ssTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL-~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~ 111 (970)
T KOG0946|consen 33 SSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVL-QRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGL 111 (970)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH-hhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHH
Confidence 44556779999999999999998887656666666665 566 789999999998888876553110 0000000
Q ss_pred h----hhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHH-------HHHHHHHhccCchHHHHHHHHHHH
Q 008746 218 E----ALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDI-------MNLLEDRLQHANGAVVLSTIKVFL 286 (555)
Q Consensus 218 ~----~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i-------~~~l~~~L~s~~~aV~~eai~~i~ 286 (555)
| ..-++..+.-++..+...+=..+...+++|..+...-|.+..+. +..+..+|.+.-.-|+-+|+-.+.
T Consensus 112 ~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~ 191 (970)
T KOG0946|consen 112 WIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLS 191 (970)
T ss_pred HHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHH
Confidence 0 11122234444554555554445555555555444444443332 223334455544445556666666
Q ss_pred HhcCCcchh
Q 008746 287 HLTLSMTDV 295 (555)
Q Consensus 287 ~l~~~~~~~ 295 (555)
.+....+.+
T Consensus 192 eL~k~n~~I 200 (970)
T KOG0946|consen 192 ELVKDNSSI 200 (970)
T ss_pred HHHccCchH
Confidence 666655544
No 106
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.14 E-value=1.8 Score=45.99 Aligned_cols=230 Identities=16% Similarity=0.200 Sum_probs=120.9
Q ss_pred hhHHHHHHHHHHhcCCCChHHH----HHHHHHHh-HcCCCChHHHHHHHHHhcCCChh----hhHHHHHHHHhhcc-CCC
Q 008746 78 VLKKMCYLYVGNYAKVNPDLAL----LTINFLQR-DCKDEDPMIRGLALRSLCSLRVA----NLVEYLVGPLGLGL-KDN 147 (555)
Q Consensus 78 ~~Krl~yl~l~~~~~~~~e~~~----l~in~l~k-DL~~~n~~vr~lAL~~L~~i~~~----ei~~~l~~~i~~~l-~d~ 147 (555)
..+++.+++...+..-+++..+ -.++.+.+ -+...++..|..|++.+|.+.+. +..+.+...+.... ...
T Consensus 163 ~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~ 242 (415)
T PF12460_consen 163 QQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSE 242 (415)
T ss_pred ccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccC
Confidence 5778888888887766665432 12333333 34556799999999999987443 33334444444333 334
Q ss_pred ChHHHHHHHHHHH-----HHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhcc
Q 008746 148 NSYVRTVAVIGVL-----KLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALIS 222 (555)
Q Consensus 148 ~~~VRk~A~lal~-----kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~ 222 (555)
.+.-|..++..+. -+.|.+|.. .++.+.+..+ ++| +.+...|..++.-+..+.++..-..+.....++.
T Consensus 243 ~~~~~~~~~~~~~Wi~KaLv~R~~~~~---~~~~~~L~~l-L~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLy 316 (415)
T PF12460_consen 243 DSELRPQALEILIWITKALVMRGHPLA---TELLDKLLEL-LSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLY 316 (415)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCchH---HHHHHHHHHH-hCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHH
Confidence 4444444443332 234566664 4678888887 466 5555666666766655422110000001111111
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 008746 223 KPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYER 302 (555)
Q Consensus 223 ~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~ 302 (555)
+| +++. ..+=.++..|...+.+....++.++..++++....|+. .-++.
T Consensus 317 kQ---R~F~----------~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~------------------~~l~~ 365 (415)
T PF12460_consen 317 KQ---RFFT----------QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLL------------------PELPT 365 (415)
T ss_pred hH---HHHH----------HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHH------------------HHHHH
Confidence 11 0100 00001122222222212222333333334333333321 11234
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccccccccee
Q 008746 303 IKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF 344 (555)
Q Consensus 303 i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f 344 (555)
+.+.|..-|+.++++++..+|+.+..++...|+++.+|+..+
T Consensus 366 LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sL 407 (415)
T PF12460_consen 366 LLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSL 407 (415)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 455555556778889999999999999999999998887643
No 107
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.06 E-value=0.63 Score=52.84 Aligned_cols=193 Identities=13% Similarity=0.099 Sum_probs=135.6
Q ss_pred hhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCC-Ccc-cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc
Q 008746 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA-PTC-IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (555)
Q Consensus 131 ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p-~~~-~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~ 208 (555)
++..-+.+.+...+.|++.-=|+.|+..+.......+ +.. ...+..-.+.+..+.|.|..|...|+..|..|+..-..
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 4556667777788899999999999999999987555 221 11233333444447899999999999999999875432
Q ss_pred cchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 008746 209 TSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHL 288 (555)
Q Consensus 209 ~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l 288 (555)
. +.. .....+..++..+.+--+.+.-.++.++..+.. ..-...+.+.+...+.+.||.+.-++...+-..
T Consensus 329 ~----~~~----~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n--s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~ 398 (815)
T KOG1820|consen 329 L----FRK----YAKNVFPSLLDRLKEKKSELRDALLKALDAILN--STPLSKMSEAILEALKGKNPQIKGECLLLLDRK 398 (815)
T ss_pred h----hHH----HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 1 111 112356667777777777888888888888774 344567888999999999999988887766432
Q ss_pred -cCCc-chhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhC
Q 008746 289 -TLSM-TDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (555)
Q Consensus 289 -~~~~-~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~ 333 (555)
.... .......++.+++.+....++.+.++|-+|++.+..+...+
T Consensus 399 ~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 399 LRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred HhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 2221 11223445666777777888999999999999998776654
No 108
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=1.8 Score=48.29 Aligned_cols=376 Identities=13% Similarity=0.068 Sum_probs=177.9
Q ss_pred HHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCc-------chhHHHhhhhcCC-CCchhHHHHHHHHHHhcCCC
Q 008746 23 SDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDV-------SAVFGEMVMCSAT-SDIVLKKMCYLYVGNYAKVN 94 (555)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~-------s~lf~~vi~~~~s-~~~~~Krl~yl~l~~~~~~~ 94 (555)
.++++-|+.+.+. ++.....++++.+--+...|.+. ..+.|-++.+++. .++.+--++.-++..+.+--
T Consensus 167 Sk~kkLL~gL~~~---~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl 243 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAE---SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL 243 (1051)
T ss_pred HHHHHHHHhcccc---CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc
Confidence 3777778876554 34567888888887777777433 3334444565543 44555555544444433322
Q ss_pred Ch---HHHH--HHHHHHhHcCCCC---hHHHH-HHHHHhcCCChhhhHHH-HHHHHhhccCCCChHHHHHHHHHHHHHhh
Q 008746 95 PD---LALL--TINFLQRDCKDED---PMIRG-LALRSLCSLRVANLVEY-LVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (555)
Q Consensus 95 ~e---~~~l--~in~l~kDL~~~n---~~vr~-lAL~~L~~i~~~ei~~~-l~~~i~~~l~d~~~~VRk~A~lal~kl~~ 164 (555)
|. .+.- +|..|+..|.--. -..++ .||.-|+.-+...+.+. -+..+...+.-=+-.++|+|+-....+++
T Consensus 244 P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 244 PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 2222 3445554443211 11111 34444444444444332 11122222222344566766666666664
Q ss_pred h-CCCccc-CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHh---hccccchHhhhHHhhhccHHHHHHHHhhcC-CCCh
Q 008746 165 I-SAPTCI-DADFPPTLKHLMLNDPDPQVVANCLSALQEIWS---LEASTSEEASREREALISKPVIYYLLNRIK-EFSE 238 (555)
Q Consensus 165 ~-~p~~~~-~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~---~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~-~~~p 238 (555)
. .|+.+. .-+.++.|..+ +...|-.++-+++..++.+.. +.|......|. .+++. .+.+|+..-. ..+.
T Consensus 324 si~sd~f~~v~ealPlL~~l-Ls~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s--~dLi~--~~~qLlsvt~t~Ls~ 398 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPL-LSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCS--HDLIT--NIQQLLSVTPTILSN 398 (1051)
T ss_pred cCCCccchHHHHHHHHHHHH-HhhccchhHHHHHHHHHHHHHhcccChHHHHHHhc--hhHHH--HHHHHHhcCcccccc
Confidence 2 333320 13566788887 566676677666666776654 33322222221 11221 1233333211 1122
Q ss_pred hHHHHHHHHHHccCCCChhH-----HHHHHHHHHHHhcc--------------CchHHHHHHHHHHHHhcCCcchhHHHH
Q 008746 239 WAQCLVLELVAKYVPLDSNE-----IFDIMNLLEDRLQH--------------ANGAVVLSTIKVFLHLTLSMTDVHQQV 299 (555)
Q Consensus 239 w~q~~iL~~L~~~~~~~~~~-----~~~i~~~l~~~L~s--------------~~~aV~~eai~~i~~l~~~~~~~~~~~ 299 (555)
-.-+.++++|...+...|.. ..+|.+.+..+++. ..|+=+++....++.+-+..+.-...+
T Consensus 399 ~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~ 478 (1051)
T KOG0168|consen 399 GTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFA 478 (1051)
T ss_pred cchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceee
Confidence 23455566666655444432 23455556666542 224557888888876544322100000
Q ss_pred HH-H----HH---------------------HHHHHHhc--CCCchh-----HHHHHHHHHHHHhhCCcccccccceee-
Q 008746 300 YE-R----IK---------------------APLLTLVS--SGSPEQ-----SYAVLSHLHILVMRAPFIFASDYKHFY- 345 (555)
Q Consensus 300 l~-~----i~---------------------~~L~~ll~--~~~~~~-----ry~aL~~l~~l~~~~p~~~~~~~~~f~- 345 (555)
++ . +. ++..+.+. ..++.. +-.....=..++...|++++...+.++
T Consensus 479 ~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llp 558 (1051)
T KOG0168|consen 479 VDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLP 558 (1051)
T ss_pred hhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHH
Confidence 00 0 00 00001111 011111 111111112344555666665544322
Q ss_pred -----eccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHh---------hcCCHHHHHHHHHHHHHHhcccCc
Q 008746 346 -----CQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYA---------ANVDIPIARESIRAVGKIALQQYD 406 (555)
Q Consensus 346 -----~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~---------~~~d~~~~~~~i~~i~~la~~~~~ 406 (555)
.....+.+||.+-|..|.+++-=.|.+.|..-|.+.. .+.|..+..-+++....+-+|+|+
T Consensus 559 VLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd 633 (1051)
T KOG0168|consen 559 VLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPD 633 (1051)
T ss_pred HHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHH
Confidence 2356678899999999999987778776654443211 122333444455555556666665
No 109
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.00 E-value=1.9 Score=39.93 Aligned_cols=155 Identities=22% Similarity=0.255 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhhh-C------------CCcc-cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhH
Q 008746 151 VRTVAVIGVLKLYHI-S------------APTC-IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (555)
Q Consensus 151 VRk~A~lal~kl~~~-~------------p~~~-~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~ 216 (555)
||..|+.|+.-+.+. + |+.. ........|...++.|+++.|+.+|+.++..+....
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs---------- 71 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS---------- 71 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc----------
Confidence 566666666666655 2 3330 012233344455589999999999999999886531
Q ss_pred HhhhccHHHHHHHHhh---cCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhcc-CchHHHHHHHHHH---HHhc
Q 008746 217 REALISKPVIYYLLNR---IKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQH-ANGAVVLSTIKVF---LHLT 289 (555)
Q Consensus 217 ~~~ll~~~~~~~L~~~---l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s-~~~aV~~eai~~i---~~l~ 289 (555)
++.+..--+. -..+.++..--. .-...+-..+...+++ .++.++-+..+++ +...
T Consensus 72 ------k~~L~~Ae~~~~~~~sFtslS~tLa------------~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~t 133 (182)
T PF13251_consen 72 ------KPFLAQAEESKGPSGSFTSLSSTLA------------SMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQAT 133 (182)
T ss_pred ------HHHHHHHHhcCCCCCCcccHHHHHH------------HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccC
Confidence 1111111110 011222211100 0001112233444444 4556665666655 4444
Q ss_pred CCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCC
Q 008746 290 LSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP 334 (555)
Q Consensus 290 ~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p 334 (555)
|+.. +....+.++...+..++.++|++++..+|-.+..++...|
T Consensus 134 PY~r-L~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 134 PYHR-LPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred Chhh-cCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 4432 3344566666677778888999999999999988876543
No 110
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.78 E-value=4.3 Score=39.45 Aligned_cols=249 Identities=14% Similarity=0.079 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHc--CCCChHHHHHHH
Q 008746 44 KRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDC--KDEDPMIRGLAL 121 (555)
Q Consensus 44 k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL--~~~n~~vr~lAL 121 (555)
-.+..+.++++-..|-+-+ .--+.+..-.++-..|.-+-.++...- +.+ +++.+..-+ .+..|.+|..|-
T Consensus 19 l~~r~rALf~Lr~l~~~~~--i~~i~ka~~d~s~llkhe~ay~LgQ~~--~~~----Av~~l~~vl~desq~pmvRhEAa 90 (289)
T KOG0567|consen 19 LQNRFRALFNLRNLLGPAA--IKAITKAFIDDSALLKHELAYVLGQMQ--DED----AVPVLVEVLLDESQEPMVRHEAA 90 (289)
T ss_pred HHHHHHHHHhhhccCChHH--HHHHHHhcccchhhhccchhhhhhhhc--cch----hhHHHHHHhcccccchHHHHHHH
Confidence 4455667777777765554 334445554444455555545554442 222 235555545 456799999999
Q ss_pred HHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHH
Q 008746 122 RSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQE 201 (555)
Q Consensus 122 ~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~ 201 (555)
.+||.++.++..+ .+.+..+|+-..||-+..+|+.++-..+.-.- ..+- ......|+-|....+.+.-+..
T Consensus 91 ealga~~~~~~~~----~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~-~~~~----~p~~SvdPa~p~~~ssv~~lr~ 161 (289)
T KOG0567|consen 91 EALGAIGDPESLE----ILTKYIKDPCKEVRETCELAIKRLEWKDIIDK-IANS----SPYISVDPAPPANLSSVHELRA 161 (289)
T ss_pred HHHHhhcchhhHH----HHHHHhcCCccccchHHHHHHHHHHHhhcccc-cccc----CccccCCCCCccccccHHHHHH
Confidence 9999999887654 45577789999999999999998854321110 0000 0111123333211111111111
Q ss_pred HHhhccccchHhhhHHhhhcc---HHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhc--cCchH
Q 008746 202 IWSLEASTSEEASREREALIS---KPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQ--HANGA 276 (555)
Q Consensus 202 i~~~~~~~~~~~~~~~~~ll~---~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~--s~~~a 276 (555)
...+...+.++.......+-+ -..+..|.+.+...+.-.|..+=-+|+.+. ++. -+..+...|. .-++.
T Consensus 162 ~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~--s~~----ai~~L~k~L~d~~E~pM 235 (289)
T KOG0567|consen 162 ELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQ--SPA----AIPSLIKVLLDETEHPM 235 (289)
T ss_pred HHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhcc--chh----hhHHHHHHHHhhhcchH
Confidence 111111111111111111100 113444555555566666776666666654 222 1233333333 34678
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 008746 277 VVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSH 325 (555)
Q Consensus 277 V~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~ 325 (555)
|+.||+.+++.++... ..+.|..++.+.++-++.-.--.
T Consensus 236 VRhEaAeALGaIa~e~----------~~~vL~e~~~D~~~vv~esc~va 274 (289)
T KOG0567|consen 236 VRHEAAEALGAIADED----------CVEVLKEYLGDEERVVRESCEVA 274 (289)
T ss_pred HHHHHHHHHHhhcCHH----------HHHHHHHHcCCcHHHHHHHHHHH
Confidence 8999999888876421 23445566666555555443333
No 111
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=94.75 E-value=5.7 Score=40.70 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHH
Q 008746 150 YVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYL 229 (555)
Q Consensus 150 ~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L 229 (555)
--++-|+.-+.+.|+..|++. .+.++.=..+ ..|.|.+|+..|+.-|=-.++.+.. ....+-...++++..+..|
T Consensus 39 k~k~lasq~ip~~fk~fp~la--~~a~da~~d~-~ed~d~~ir~qaik~lp~fc~~d~~--~rv~d~l~qLLnk~sl~~L 113 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPSLA--DEAIDAQLDL-CEDDDVGIRRQAIKGLPLFCKGDAL--SRVNDVLVQLLNKASLTGL 113 (460)
T ss_pred HHHHHHHHHHHHHHhhCchhh--hHHHHhhhcc-ccccchhhHHHHHhccchhccCchh--hhhHHHHHHHHHHHHHHHH
Confidence 345678888999999999986 6667766676 5788999999998887777665321 1111112234444445556
Q ss_pred HhhcCCCChhHHHHHHHHHHcc
Q 008746 230 LNRIKEFSEWAQCLVLELVAKY 251 (555)
Q Consensus 230 ~~~l~~~~pw~q~~iL~~L~~~ 251 (555)
+.+....++-.+.+.+.+++.-
T Consensus 114 f~~~~~~D~~irek~l~fi~tK 135 (460)
T KOG2213|consen 114 FGQIEVGDEQIREKVLKFIRTK 135 (460)
T ss_pred HhhhhhhhHHHHHHHHHHHHHH
Confidence 6555555777888888877663
No 112
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=3.1 Score=48.29 Aligned_cols=228 Identities=17% Similarity=0.156 Sum_probs=131.1
Q ss_pred CcchhHHHhhhh-cCCCCchhHHHHHHHHHHhcCCCC------hHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC---Ch
Q 008746 60 DVSAVFGEMVMC-SATSDIVLKKMCYLYVGNYAKVNP------DLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RV 129 (555)
Q Consensus 60 d~s~lf~~vi~~-~~s~~~~~Krl~yl~l~~~~~~~~------e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i---~~ 129 (555)
.++.+| .+... -++.+..+++=+|=.+..+....+ ...-.+-|++..-+++.....+.-++.++..+ .+
T Consensus 651 ~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~ 729 (1176)
T KOG1248|consen 651 QVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS 729 (1176)
T ss_pred hHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc
Confidence 344455 55543 345577788888888888776521 12345568888888888888888888888876 22
Q ss_pred ---hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhh--hCCCcccC------CCchHHHHHHHhcCCChHHHHHHHHH
Q 008746 130 ---ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH--ISAPTCID------ADFPPTLKHLMLNDPDPQVVANCLSA 198 (555)
Q Consensus 130 ---~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~--~~p~~~~~------~~~~~~l~~lll~d~d~~V~~~a~~~ 198 (555)
-++++..++.+.-.+++.|.+-|+.|.-|+.-+.+ .+-+...+ .+++..|...+-+| .+.+.++.+.+
T Consensus 730 ~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd-~~~~~as~Iva 808 (1176)
T KOG1248|consen 730 AEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGD-STRVVASDIVA 808 (1176)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhccc-HHHHHHHHHHH
Confidence 24666777777777788899999999988887763 11111101 12333333332222 22222222333
Q ss_pred HHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHH
Q 008746 199 LQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVV 278 (555)
Q Consensus 199 L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~ 278 (555)
+..+... ...+. +.+....+++.+.-.|.+.++.|+
T Consensus 809 i~~il~e------------------------------------------~~~~l--d~~~l~~li~~V~~~L~s~sreI~ 844 (1176)
T KOG1248|consen 809 ITHILQE------------------------------------------FKNIL--DDETLEKLISMVCLYLASNSREIA 844 (1176)
T ss_pred HHHHHHH------------------------------------------Hhccc--cHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3333221 01111 334455677788888889999998
Q ss_pred HHHHHHHHHhcCCcchhH-HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhC
Q 008746 279 LSTIKVFLHLTLSMTDVH-QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (555)
Q Consensus 279 ~eai~~i~~l~~~~~~~~-~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~ 333 (555)
-.|+..+--+....+... ..-++.+...+..++.+...++|--+...+..++.+.
T Consensus 845 kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 845 KAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 888887754433333321 1112233344455555445556655555555666654
No 113
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.74 E-value=0.11 Score=42.40 Aligned_cols=67 Identities=24% Similarity=0.204 Sum_probs=51.0
Q ss_pred HHHHhHcCCCChHHHHHHHHHhcCC---Ch--hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc
Q 008746 103 NFLQRDCKDEDPMIRGLALRSLCSL---RV--ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT 169 (555)
Q Consensus 103 n~l~kDL~~~n~~vr~lAL~~L~~i---~~--~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~ 169 (555)
+....+++|+.+-+|+-||..|+++ ++ ..-.+.+.......+.|+++||-=.|+-++..+...+|+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 5667788888888999998888886 22 2234566667777788888888888888888888877764
No 114
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.70 E-value=0.15 Score=41.57 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=54.3
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHhhhCC-CcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 008746 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISA-PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 138 ~~i~~~l~d~~~~VRk~A~lal~kl~~~~p-~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~ 207 (555)
..+...+.|+.+.||-.++.-+.++.+... .....+.....+... +.|+|+.|-.+|+..|..++...|
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~-L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQ-LKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHCh
Confidence 344566899999999999999999998666 322224555666665 699999999999999999987665
No 115
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.38 E-value=0.35 Score=45.24 Aligned_cols=69 Identities=20% Similarity=0.100 Sum_probs=57.6
Q ss_pred HHHHHhHcCCCChHHHHHHHHHhcCCChhhhH--HHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc
Q 008746 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLV--EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (555)
Q Consensus 102 in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~--~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~ 170 (555)
.+.+.+-..+++..+|..|++.++.+-...++ -..+|.+..+..|+++.||+.|...+..++.++|+.+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 35566677899999999999999886443333 2368889999999999999999999999999999876
No 116
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=13 Score=43.08 Aligned_cols=244 Identities=18% Similarity=0.161 Sum_probs=130.8
Q ss_pred hhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcC-CChHHHHHHHHHHHHHHhhcc
Q 008746 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND-PDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 129 ~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d-~d~~V~~~a~~~L~~i~~~~~ 207 (555)
.|+++|.++..+...++|.+..||-.||-+++|+....|-.. ..+.+..+.++ .+- .+++.-+.|+.+|.|++....
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L-ad~vi~svid~-~~p~e~~~aWHgacLaLAELA~rGl 412 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL-ADQVIGSVIDL-FNPAEDDSAWHGACLALAELALRGL 412 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH-HHHHHHHHHHh-cCcCCchhHHHHHHHHHHHHHhcCC
Confidence 368899999999999999999999999999999998877433 23444444444 232 357777888888888865421
Q ss_pred ccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHh-ccCchHHHHHHHHHHH
Q 008746 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRL-QHANGAVVLSTIKVFL 286 (555)
Q Consensus 208 ~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L-~s~~~aV~~eai~~i~ 286 (555)
+-+..+..++ ..|++.|.. + ...- .+.+..|+=+|.=.+.
T Consensus 413 -------------Llps~l~dVv-----------plI~kaL~Y----d-----------~~~G~~s~G~~VRDaAcY~~W 453 (1133)
T KOG1943|consen 413 -------------LLPSLLEDVV-----------PLILKALHY----D-----------VRRGQHSVGQHVRDAACYVCW 453 (1133)
T ss_pred -------------cchHHHHHHH-----------HHHHHHhhh----h-----------hhhcccccccchHHHHHHHHH
Confidence 1110011110 111111111 0 0011 2333344444433333
Q ss_pred HhcC-Ccc-hhHHHHHHHHHHHH-HHHhcCCCchhHHHHHHHHHHHHhhCCcc-----cccccceeeeccCCcHHHHHHH
Q 008746 287 HLTL-SMT-DVHQQVYERIKAPL-LTLVSSGSPEQSYAVLSHLHILVMRAPFI-----FASDYKHFYCQYNEPSYVKKLK 358 (555)
Q Consensus 287 ~l~~-~~~-~~~~~~l~~i~~~L-~~ll~~~~~~~ry~aL~~l~~l~~~~p~~-----~~~~~~~f~~~~~dd~~Ir~~a 358 (555)
.+.- +.+ +++. ++.++...| +.-+=+++-|.|+.|--++...+-+.++. ...+.+.|-+. +. ...=
T Consensus 454 Af~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~-~r----sNcy 527 (1133)
T KOG1943|consen 454 AFARAYSPSDLKP-VLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVT-NR----SNCY 527 (1133)
T ss_pred HHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhh-hh----hhHH
Confidence 3322 222 2322 344444433 22233688999999999999998886543 11222221111 00 0001
Q ss_pred HHHHHHcc-CCCCHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHhcccCcH--HHHHHHHHHHhh
Q 008746 359 LEMLTAVA-NESNTYEIVTELCEY-AANVDIPIARESIRAVGKIALQQYDV--NAIVDRLLQFLE 419 (555)
Q Consensus 359 L~iL~~l~-~~~N~~~Iv~eL~~y-~~~~d~~~~~~~i~~i~~la~~~~~~--~~~i~~ll~ll~ 419 (555)
+++-..++ .+.-...+++.|..- +-.=|..++..+..++..+++..|+. ..++.-+++-..
T Consensus 528 ~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l 592 (1133)
T KOG1943|consen 528 LDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTL 592 (1133)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc
Confidence 22222222 122344556655433 22237888888888998889888873 234444544433
No 117
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.33 E-value=12 Score=42.52 Aligned_cols=280 Identities=13% Similarity=0.132 Sum_probs=158.4
Q ss_pred CChhHHHHHHHHHHccCCC---ChhHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHh
Q 008746 236 FSEWAQCLVLELVAKYVPL---DSNEIFDIMNLLEDRL-QHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLV 311 (555)
Q Consensus 236 ~~pw~q~~iL~~L~~~~~~---~~~~~~~i~~~l~~~L-~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll 311 (555)
-+|.+-.+++-++.+|... ++.-...+++.....+ -+..+.+...|++++..+.... +.+.....+...|..+.
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~--vl~~~~p~ild~L~qla 539 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVK--VLLSLQPMILDGLLQLA 539 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCce--eccccchHHHHHHHHHc
Confidence 4677777777777776533 3333344444443333 3556678899999988776422 22233344555667777
Q ss_pred cCCCchhHHHHHHHHHHHHhhCCcc-------cccccceeeeccCCcHHHHHHHHHHHHHccC----CCCHH-HHHHHHH
Q 008746 312 SSGSPEQSYAVLSHLHILVMRAPFI-------FASDYKHFYCQYNEPSYVKKLKLEMLTAVAN----ESNTY-EIVTELC 379 (555)
Q Consensus 312 ~~~~~~~ry~aL~~l~~l~~~~p~~-------~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~----~~N~~-~Iv~eL~ 379 (555)
+.+..++--+..+.+..++..+|+. +.|..-.+|..+++|+++...+.|++-.++. .++.. ..++.|.
T Consensus 540 s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPsli 619 (1005)
T KOG2274|consen 540 SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLI 619 (1005)
T ss_pred ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 7777888888899999999988863 2223333456677777999999998877753 33332 3466666
Q ss_pred HHhhcCC----HHHHHHHHHHHHHHhcccCc--HH----HHHHHHHHHhhcccc----hhHHHHHHHHH-----HHHHhC
Q 008746 380 EYAANVD----IPIARESIRAVGKIALQQYD--VN----AIVDRLLQFLEMEKD----YVTAEALVLVK-----DLLRKY 440 (555)
Q Consensus 380 ~y~~~~d----~~~~~~~i~~i~~la~~~~~--~~----~~i~~ll~ll~~~~~----~v~~e~i~~i~-----~ii~~~ 440 (555)
.-+...+ ......++.-|.....+-|+ .. .++..+.+..-..++ ....||+..+. ++.+-.
T Consensus 620 sil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~ 699 (1005)
T KOG2274|consen 620 SVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWH 699 (1005)
T ss_pred HHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhc
Confidence 6554443 33444444444433433332 11 234555554433332 23345544322 233322
Q ss_pred CCCc-c--hHHHHHhhhcccCCCchHHH---HHHHHHHhccccCC-CChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 008746 441 PQWS-H--DCIAVVGSISSQNVQEPKAK---AALIWMLGEYSQDM-QDAPYILESLTENWEEEPSAEVRLHLLTAVMKCF 513 (555)
Q Consensus 441 ~~~~-~--~~~~~l~~l~~~~~~~~~~~---~~~~wiiGEy~~~~-~~~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~ 513 (555)
.+.. . +++.++.+++....++..+- .-++-++...+... ++...+++.++.+..+.....|-+.++..++++.
T Consensus 700 ~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~ 779 (1005)
T KOG2274|consen 700 DEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLV 779 (1005)
T ss_pred cCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 2211 2 45677788762222222211 11222333333333 3456788888877766433888888999999998
Q ss_pred hcCC
Q 008746 514 FKRP 517 (555)
Q Consensus 514 ~~~p 517 (555)
...+
T Consensus 780 ~t~~ 783 (1005)
T KOG2274|consen 780 HTDL 783 (1005)
T ss_pred hCCH
Confidence 7654
No 118
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=94.25 E-value=0.13 Score=48.97 Aligned_cols=130 Identities=17% Similarity=0.119 Sum_probs=87.3
Q ss_pred hhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCC-CChHHH-HHHHHHhcCCChhhhHHHHHHHHhhccCC
Q 008746 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKD-EDPMIR-GLALRSLCSLRVANLVEYLVGPLGLGLKD 146 (555)
Q Consensus 69 i~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~-~n~~vr-~lAL~~L~~i~~~ei~~~l~~~i~~~l~d 146 (555)
-.+..+..++.|-++++.+....+..... .++.+.+-+.+ +|..+. ++|-+.++.+.... +.+.+.+.+.+.+
T Consensus 57 ~~L~~~~~~E~~~la~~il~~~~~~~~~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~~s 131 (213)
T PF08713_consen 57 DELWESGYREERYLALLILDKRRKKLTEE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKWAKS 131 (213)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCGGG--HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHHHHC
T ss_pred HHHcCCchHHHHHHHHHHhHHHhhhhhHH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHHHhC
Confidence 45778888888988888887655332221 23555555544 355444 45567777653221 3456667788999
Q ss_pred CChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc
Q 008746 147 NNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (555)
Q Consensus 147 ~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~ 208 (555)
+++++|+.|+.++++.++. +.. +.+...+... ..|++..|+.+.--+|.+++..+|+
T Consensus 132 ~~~w~rR~~~v~~~~~~~~--~~~--~~~l~~~~~~-~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 132 DNEWVRRAAIVMLLRYIRK--EDF--DELLEIIEAL-LKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp SSHHHHHHHHHCTTTHGGG--CHH--HHHHHHHHHC-TTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred CcHHHHHHHHHHHHHHHHh--cCH--HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHhCHH
Confidence 9999999999999887765 222 3455566665 5899999999999999999887663
No 119
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.94 E-value=12 Score=41.30 Aligned_cols=171 Identities=16% Similarity=0.118 Sum_probs=97.5
Q ss_pred HHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhcc-CCC---C-hHHHHHHHHHHHHHhhhCCCcccCC
Q 008746 99 LLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL-KDN---N-SYVRTVAVIGVLKLYHISAPTCIDA 173 (555)
Q Consensus 99 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l-~d~---~-~~VRk~A~lal~kl~~~~p~~~~~~ 173 (555)
.++.|.+|.--+ ++++.+--+.+....-.++-+.+...+...+ .-+ . ..|=+-++--+-.+.+.+++ .
T Consensus 8 ~~If~k~Q~s~a---gh~~kl~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e----~ 80 (892)
T KOG2025|consen 8 QLIFNKIQQSDA---GHYSKLLAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKE----E 80 (892)
T ss_pred HHHHHHHHhhhc---chHHHHHHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCch----h
Confidence 455566655332 3345444444433323334444444444222 111 1 13334444334444444444 3
Q ss_pred CchH----HHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 008746 174 DFPP----TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVA 249 (555)
Q Consensus 174 ~~~~----~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~ 249 (555)
+++. .+.+. ...+|-.|+...+..+.-+......++. .++++ ...+++..+.+..|-.++..+..|.
T Consensus 81 DlV~~~f~hlLRg-~Eskdk~VRfrvlqila~l~d~~~eidd-------~vfn~-l~e~l~~Rl~Drep~VRiqAv~aLs 151 (892)
T KOG2025|consen 81 DLVAGTFYHLLRG-TESKDKKVRFRVLQILALLSDENAEIDD-------DVFNK-LNEKLLIRLKDREPNVRIQAVLALS 151 (892)
T ss_pred hHHHHHHHHHHhc-ccCcchhHHHHHHHHHHHHhccccccCH-------HHHHH-HHHHHHHHHhccCchHHHHHHHHHH
Confidence 3443 33333 3568899999999988887664333211 12222 4456667788999999999999999
Q ss_pred ccCCCChhHHHHHHHHHHHHhccCch-HHHHHHHHHH
Q 008746 250 KYVPLDSNEIFDIMNLLEDRLQHANG-AVVLSTIKVF 285 (555)
Q Consensus 250 ~~~~~~~~~~~~i~~~l~~~L~s~~~-aV~~eai~~i 285 (555)
+|..++.++...+.+.+..++++..+ -|+..|...|
T Consensus 152 rlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 152 RLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred HHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 99865556667888899888887544 4666665544
No 120
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.56 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=10.9
Q ss_pred cCCCChHHHHHHHHHHHHHhhhC
Q 008746 144 LKDNNSYVRTVAVIGVLKLYHIS 166 (555)
Q Consensus 144 l~d~~~~VRk~A~lal~kl~~~~ 166 (555)
.+|.+..|||+|+.|++=++-.+
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D 583 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDD 583 (926)
T ss_pred cccCchHHHHHHHHheeeeEecC
Confidence 34445555555555554444333
No 121
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.76 E-value=7.2 Score=39.30 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=33.2
Q ss_pred HHHHHHH-HHhhcCCHHHHHHHHHHHHHHhcccCc-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh
Q 008746 373 EIVTELC-EYAANVDIPIARESIRAVGKIALQQYD-VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRK 439 (555)
Q Consensus 373 ~Iv~eL~-~y~~~~d~~~~~~~i~~i~~la~~~~~-~~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~ 439 (555)
.+++.|. ..+++.|+.+|+.+++.+|.++.-..+ ...++..+.+.+..+...+...++.++.+++..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~ 94 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLT 94 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4444443 344445555666666666665554443 233455555555444344444445555555444
No 122
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=6.5 Score=45.77 Aligned_cols=272 Identities=12% Similarity=0.145 Sum_probs=149.9
Q ss_pred HHHhcCCCcchhHHHhhh-hcCCCCchhHHHHHHHHHH----hcCCCChHHHHHHHHHHhHc-CCCChHHHHHHHHHhcC
Q 008746 53 SYMTIGIDVSAVFGEMVM-CSATSDIVLKKMCYLYVGN----YAKVNPDLALLTINFLQRDC-KDEDPMIRGLALRSLCS 126 (555)
Q Consensus 53 ~~~~~G~d~s~lf~~vi~-~~~s~~~~~Krl~yl~l~~----~~~~~~e~~~l~in~l~kDL-~~~n~~vr~lAL~~L~~ 126 (555)
|....+.|+...+.+-+. +.++.|...+.--++.+-. .....++-.+-..+++.... ++.++-++.-|-+.|..
T Consensus 601 ~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~ 680 (1176)
T KOG1248|consen 601 YFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEE 680 (1176)
T ss_pred HhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHH
Confidence 455567777776666654 4444432322222221111 12223333333334555444 45588888888776665
Q ss_pred CCh--------hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCC----CcccCCCchHHHHHHHhcCCChHHHHH
Q 008746 127 LRV--------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA----PTCIDADFPPTLKHLMLNDPDPQVVAN 194 (555)
Q Consensus 127 i~~--------~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p----~~~~~~~~~~~l~~lll~d~d~~V~~~ 194 (555)
+.. ..-++.+...+....++...++|+.++-|+..+++..| +.+ +..++.+.=. .+|-|..-+.+
T Consensus 681 l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~EvIL~-~Ke~n~~aR~~ 757 (1176)
T KOG1248|consen 681 LSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPEVILS-LKEVNVKARRN 757 (1176)
T ss_pred HhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHHHh-cccccHHHHhh
Confidence 532 23444555556666677788999999999999999888 222 2233322222 36777777889
Q ss_pred HHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhcc--
Q 008746 195 CLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQH-- 272 (555)
Q Consensus 195 a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s-- 272 (555)
|...|..|+.... .+...+ +| + ++-...++..+..-+-.
T Consensus 758 Af~lL~~i~~i~~---------------------~~d~g~--e~--~--------------~~~lnefl~~Isagl~gd~ 798 (1176)
T KOG1248|consen 758 AFALLVFIGAIQS---------------------SLDDGN--EP--A--------------SAILNEFLSIISAGLVGDS 798 (1176)
T ss_pred HHHHHHHHHHHHh---------------------hhcccc--cc--h--------------HHHHHHHHHHHHhhhcccH
Confidence 9988888763100 000000 11 0 01112233333332221
Q ss_pred ---CchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcc-cccccce-----
Q 008746 273 ---ANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI-FASDYKH----- 343 (555)
Q Consensus 273 ---~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~-~~~~~~~----- 343 (555)
...+ ++....++.+...... ...+.++.+.+..++.++.++++-.|+..+..++...|+. .++|...
T Consensus 799 ~~~~as~-Ivai~~il~e~~~~ld---~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sl 874 (1176)
T KOG1248|consen 799 TRVVASD-IVAITHILQEFKNILD---DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSL 874 (1176)
T ss_pred HHHHHHH-HHHHHHHHHHHhcccc---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHH
Confidence 1122 2222233334433322 2344555666777888999999999999999999999984 4566632
Q ss_pred eeeccCCcHHHHHHHHHHHHHccCCCC
Q 008746 344 FYCQYNEPSYVKKLKLEMLTAVANESN 370 (555)
Q Consensus 344 f~~~~~dd~~Ir~~aL~iL~~l~~~~N 370 (555)
|-...+-..++|.+...+|-.|+..--
T Consensus 875 l~ls~d~k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 875 LALSHDHKIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 222333367788777777777755443
No 123
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=8.7 Score=38.52 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=72.3
Q ss_pred CCcHHHHHHHHHHHHHccCCCCHHHHHHH-----H-------HHHhhcCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Q 008746 349 NEPSYVKKLKLEMLTAVANESNTYEIVTE-----L-------CEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQ 416 (555)
Q Consensus 349 ~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~e-----L-------~~y~~~~d~~~~~~~i~~i~~la~~~~~~~~~i~~ll~ 416 (555)
+.|++-+.+++-...++-...|+-++.+| + .+.+...|++....+|.++|.++.+.... +
T Consensus 268 dsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGa--------d 339 (524)
T KOG4413|consen 268 DSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGA--------D 339 (524)
T ss_pred CCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchh--------H
Confidence 33444455555555555444444443222 2 23455678889999999999999765442 1
Q ss_pred HhhcccchhHHHHHHHHHHHHHhCCCC-cch---HHHHHhhhc---ccCCCc--hHHHHHHHHHHhccccCCCChHHHHH
Q 008746 417 FLEMEKDYVTAEALVLVKDLLRKYPQW-SHD---CIAVVGSIS---SQNVQE--PKAKAALIWMLGEYSQDMQDAPYILE 487 (555)
Q Consensus 417 ll~~~~~~v~~e~i~~i~~ii~~~~~~-~~~---~~~~l~~l~---~~~~~~--~~~~~~~~wiiGEy~~~~~~~~~~l~ 487 (555)
++...|.--.+. .+..+..++.+- ++- ++..+...+ .+.+.+ ...+-.++|.=.---..--++.++++
T Consensus 340 lllkTgppaaeh---llarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFl 416 (524)
T KOG4413|consen 340 LLLKTGPPAAEH---LLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFL 416 (524)
T ss_pred HHhccCChHHHH---HHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHH
Confidence 222222111111 111122222111 011 111121111 123334 34455667764321111124677777
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHHh
Q 008746 488 SLTENWEEEPSAEVRLHLLTAVMKCFF 514 (555)
Q Consensus 488 ~l~~~~~~e~~~~vr~~~L~a~~Kl~~ 514 (555)
-+. +.++++.+++.+..+.-+..
T Consensus 417 gil----qQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 417 GIL----QQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred HHH----cCCChhhHHHHHHHHHHHHc
Confidence 765 55568999988877765543
No 124
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.44 E-value=5.6 Score=40.09 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=78.2
Q ss_pred HHHHHHHHhHcCCCChHHHHHHHHHhcCC--ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccC----
Q 008746 99 LLTINFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID---- 172 (555)
Q Consensus 99 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i--~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~---- 172 (555)
-+.-+-+...++++++.+|..|+++||-. -+.+++....+.+.+.+...++.||-.|+.++.-+...++....+
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 35556666888999999999999999875 457788777777777776669999999999998887766533211
Q ss_pred -------CCchHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 008746 173 -------ADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (555)
Q Consensus 173 -------~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~ 203 (555)
..+.+.+.+. +.+.++.++..|+..+..+.
T Consensus 106 ~~~~~~~~~l~~~l~~~-l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKF-LDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred cCccchHhHHHHHHHHH-HhcCCHHHHHHHHHHHHHHH
Confidence 2355667776 46668888888888877664
No 125
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.16 E-value=0.063 Score=60.11 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=65.9
Q ss_pred HHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHH
Q 008746 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKH 181 (555)
Q Consensus 102 in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~ 181 (555)
.+.+.......+...+-.+|++|||++.++.++.+.+.+..-- +....+|..|+.|+.++...+|+.+ .+.+..
T Consensus 492 ~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v-----~~~l~~ 565 (618)
T PF01347_consen 492 EQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKV-----REILLP 565 (618)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHH-----HHHHHH
T ss_pred HHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHH-----HHHHHH
Confidence 3445555566788999999999999999998877765544422 4578999999999998877666543 344555
Q ss_pred HHh-cCCChHHHHHHHHHHHHH
Q 008746 182 LML-NDPDPQVVANCLSALQEI 202 (555)
Q Consensus 182 lll-~d~d~~V~~~a~~~L~~i 202 (555)
.+. ...++.||.+|+.+|...
T Consensus 566 I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 566 IFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHH-TTS-HHHHHHHHHHHHHT
T ss_pred HhcCCCCChhHHHHHHHHHHhc
Confidence 432 357899999999888775
No 126
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.09 E-value=9.8 Score=37.56 Aligned_cols=93 Identities=10% Similarity=0.050 Sum_probs=56.9
Q ss_pred cCCCchhHHHHHHHHHHHHhhCCcccccccc------------eeeeccCCcHHHHHHHHHH--HHHccC-CCCHHHHHH
Q 008746 312 SSGSPEQSYAVLSHLHILVMRAPFIFASDYK------------HFYCQYNEPSYVKKLKLEM--LTAVAN-ESNTYEIVT 376 (555)
Q Consensus 312 ~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~------------~f~~~~~dd~~Ir~~aL~i--L~~l~~-~~N~~~Iv~ 376 (555)
+++||.-=..+.+.+..+.+..+- .++.+ .|.-..+||..|.+.-|.. ...++. +.=....++
T Consensus 134 gEkDPRnLl~~F~l~~~i~~~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p 211 (262)
T PF14500_consen 134 GEKDPRNLLLSFKLLKVILQEFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFP 211 (262)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHH
Confidence 356666555666666655555541 22221 1222346665555555443 333443 333456777
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHhcccCc
Q 008746 377 ELCEYAANVDIPIARESIRAVGKIALQQYD 406 (555)
Q Consensus 377 eL~~y~~~~d~~~~~~~i~~i~~la~~~~~ 406 (555)
-|++=+.+.....+.++.+.+..|..+|+.
T Consensus 212 ~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 212 LLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 777777787888999999999999999965
No 127
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.07 E-value=8.5 Score=47.01 Aligned_cols=222 Identities=17% Similarity=0.119 Sum_probs=122.0
Q ss_pred HHHHHHHHHhHcCCCChHHHHHHHHHhcCC----Ch-hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccC
Q 008746 98 ALLTINFLQRDCKDEDPMIRGLALRSLCSL----RV-ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID 172 (555)
Q Consensus 98 ~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~-~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~ 172 (555)
-.+..-.+..++..+||..||.|-.+++.+ +. +.+....-..+.++-+-.+|+-|---.+|++.++|........
T Consensus 874 ~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 874 RSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 345566777889999999999998888876 22 3344555555556555567777777788888888855554432
Q ss_pred CCchH---HHHHHHhcCCC-hHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHH
Q 008746 173 ADFPP---TLKHLMLNDPD-PQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELV 248 (555)
Q Consensus 173 ~~~~~---~l~~lll~d~d-~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L 248 (555)
..+.. .+..+ ..|+. |.|+..++.++.-+...... .++.++-+ -..++-.+.-..|-..+.+.+..
T Consensus 954 qhl~t~v~illal-~~Ds~~p~VqtwSL~al~~i~~s~~p-------~~~~~ve~--tlsl~~~lLls~p~~~~ev~q~~ 1023 (2067)
T KOG1822|consen 954 QHLNTSVSILLAL-ATDSTSPVVQTWSLHALALILDSSGP-------MFRVLVEP--TLSLCLKLLLSVPTSHVEVHQCY 1023 (2067)
T ss_pred hhcccHHHHHHHH-hhcCCCchhhhhHHHHHHHHHcCCCc-------eehhhHHH--HHHHHHHHcCCCCcchhhhhhhh
Confidence 33333 66666 46654 58899999999888654322 12221111 11233333344555666666666
Q ss_pred HccCCCChh------------------HHHHH-----HHHHHHHhccCchHHHHHHHHHHHHhcCCcc-hhHHHHHHHHH
Q 008746 249 AKYVPLDSN------------------EIFDI-----MNLLEDRLQHANGAVVLSTIKVFLHLTLSMT-DVHQQVYERIK 304 (555)
Q Consensus 249 ~~~~~~~~~------------------~~~~i-----~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~-~~~~~~l~~i~ 304 (555)
.+....+.. +.... .-.+.-++.+.++-|..+|++++.++....+ .+. ++.++
T Consensus 1024 ~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV 1100 (2067)
T KOG1822|consen 1024 NRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLV 1100 (2067)
T ss_pred ccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHH
Confidence 654321111 11111 1111223445577788888888865543211 111 12334
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhh
Q 008746 305 APLLTLVSSGSPEQSYAVLSHLHILVMR 332 (555)
Q Consensus 305 ~~L~~ll~~~~~~~ry~aL~~l~~l~~~ 332 (555)
..|..++.++.--.|-..+..+..++++
T Consensus 1101 ~~L~~~l~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1101 LQLCSLLSSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred HHHHHHhcchhhhhhhhHHhhhhHHhHH
Confidence 4455555554333444444445555544
No 128
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.04 E-value=17 Score=40.24 Aligned_cols=198 Identities=13% Similarity=0.079 Sum_probs=108.7
Q ss_pred hHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcC---CChH
Q 008746 114 PMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND---PDPQ 190 (555)
Q Consensus 114 ~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d---~d~~ 190 (555)
+..|..=+.+|+..++++-+..+...+++ ..-++...-.++..+....+ .|+ ++.++.+..++..+ +++.
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~--~~~~~~ea~~~~~~~~~~~~-~Pt----~~~l~~l~~l~~~~~~~~~~~ 412 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKN--KKITPLEAAQLLAVLPHTAR-YPT----EEILKALFELAESPEVQKQPY 412 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhh-cCC----HHHHHHHHHHhcCccccccHH
Confidence 67888889999999999877776655554 22233444444444444432 344 45667776763222 4566
Q ss_pred HHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHh
Q 008746 191 VVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRL 270 (555)
Q Consensus 191 V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L 270 (555)
+..+|+.++..+.. +.|..-..+ + +. +++ +-...+.+.+....
T Consensus 413 l~~sa~l~~~~lv~-----------------------~~c~~~~~~-~--~~-~~~----------~~~~~l~~~l~~~~ 455 (574)
T smart00638 413 LRESALLAYGSLVR-----------------------RYCVNTPSC-P--DF-VLE----------ELLKYLHELLQQAV 455 (574)
T ss_pred HHHHHHHHHHHHHH-----------------------HHhcCCCCC-C--hh-hHH----------HHHHHHHHHHHHHH
Confidence 77777777765532 112110110 0 00 000 00011122222233
Q ss_pred ccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHHHhhCCcccccccceeeec
Q 008746 271 QHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVS---SGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQ 347 (555)
Q Consensus 271 ~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~---~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~~~ 347 (555)
+..+.-...-++++++.++.... + ..+..++. ..++.+|..|+.++..+....|....+.+-.+|..
T Consensus 456 ~~~~~~~~~~~LkaLGN~g~~~~------i----~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n 525 (574)
T smart00638 456 SKGDEEEIQLYLKALGNAGHPSS------I----KVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN 525 (574)
T ss_pred hcCCchheeeHHHhhhccCChhH------H----HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC
Confidence 33444445556666666554221 1 11222222 23456888899998888878887766655555666
Q ss_pred cCCcHHHHHHHHHHHHHc
Q 008746 348 YNEPSYVKKLKLEMLTAV 365 (555)
Q Consensus 348 ~~dd~~Ir~~aL~iL~~l 365 (555)
.+++..+|..|..+|...
T Consensus 526 ~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 526 RAEPPEVRMAAVLVLMET 543 (574)
T ss_pred CCCChHHHHHHHHHHHhc
Confidence 678888999999888876
No 129
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=93.04 E-value=1.1 Score=46.26 Aligned_cols=228 Identities=14% Similarity=0.110 Sum_probs=138.1
Q ss_pred HHHHHHh--HcCCC----ChHHHHHHHHHhcCCChhhhH-----HHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc
Q 008746 101 TINFLQR--DCKDE----DPMIRGLALRSLCSLRVANLV-----EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT 169 (555)
Q Consensus 101 ~in~l~k--DL~~~----n~~vr~lAL~~L~~i~~~ei~-----~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~ 169 (555)
.+|-+++ |+.+. |..-|+.-+.++--.|+..|- +.+...+..++.+.+....-.+++|++.+.|.+...
T Consensus 270 ~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~c 349 (604)
T KOG4500|consen 270 SIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDIC 349 (604)
T ss_pred HHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHH
Confidence 3455554 55544 344455556666556666532 236677778888889999999999999999987665
Q ss_pred c--cCCCchHHHHHHHhc----CCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHH
Q 008746 170 C--IDADFPPTLKHLMLN----DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCL 243 (555)
Q Consensus 170 ~--~~~~~~~~l~~lll~----d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~ 243 (555)
+ .+.++.++|.+++-. |.|..+.++++.+|-.+.-.-+ ....++.......++.++....|-.+-+
T Consensus 350 i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~--------nka~~~~aGvteaIL~~lk~~~ppv~fk 421 (604)
T KOG4500|consen 350 IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS--------NKAHFAPAGVTEAILLQLKLASPPVTFK 421 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC--------chhhccccchHHHHHHHHHhcCCcchHH
Confidence 4 246777777777533 4778889999999987754322 1223343335666777788888889999
Q ss_pred HHHHHHccCCCChhHH------HHHHHHHHHHhccCchH-HHHHHHHHHHHhcCC--cchhHHHHHH-HHHHHHHHHhcC
Q 008746 244 VLELVAKYVPLDSNEI------FDIMNLLEDRLQHANGA-VVLSTIKVFLHLTLS--MTDVHQQVYE-RIKAPLLTLVSS 313 (555)
Q Consensus 244 iL~~L~~~~~~~~~~~------~~i~~~l~~~L~s~~~a-V~~eai~~i~~l~~~--~~~~~~~~l~-~i~~~L~~ll~~ 313 (555)
++..++......+.-+ ..+++.+..-=.+.+.+ |..|+-|++..+-.. .+++...+.. ..+.-+++.+.+
T Consensus 422 llgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~ 501 (604)
T KOG4500|consen 422 LLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTK 501 (604)
T ss_pred HHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHH
Confidence 9999888764332111 12333443333455554 999999987655432 1121111110 011122333334
Q ss_pred CCchhHHHHHHHHHHHHhhCCcc
Q 008746 314 GSPEQSYAVLSHLHILVMRAPFI 336 (555)
Q Consensus 314 ~~~~~ry~aL~~l~~l~~~~p~~ 336 (555)
..-+++--||-++..+...++..
T Consensus 502 ~hi~mqnEalVal~~~~~~yl~~ 524 (604)
T KOG4500|consen 502 NHINMQNEALVALLSTESKYLIV 524 (604)
T ss_pred hhHHHhHHHHHHHHHHHHHhccc
Confidence 55666666776666666565443
No 130
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=93.03 E-value=4.6 Score=42.03 Aligned_cols=156 Identities=13% Similarity=0.139 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhc-CCCcchh-HHHhhh-hcCCCCchhHHHHHHHHHHhcCCCChH--------HHHHHHHHHhHcCCCCh
Q 008746 46 ELFKKVISYMTI-GIDVSAV-FGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPDL--------ALLTINFLQRDCKDEDP 114 (555)
Q Consensus 46 ~~l~kli~~~~~-G~d~s~l-f~~vi~-~~~s~~~~~Krl~yl~l~~~~~~~~e~--------~~l~in~l~kDL~~~n~ 114 (555)
+.+.+++..+-. .+|..+. |++-+. .+-+++.+++-.||-.+..+......+ -.+++=++.+|. .+.
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~--~~~ 82 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDN--KND 82 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccC--CCh
Confidence 344444443332 2454442 333333 344555889999998887765433222 234555666654 468
Q ss_pred HHHHHHHHHhcCC-----ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCCh
Q 008746 115 MIRGLALRSLCSL-----RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDP 189 (555)
Q Consensus 115 ~vr~lAL~~L~~i-----~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~ 189 (555)
..|..||+.+-.+ +..++-..++..+.....+++...|..|+..++.+.-.+|+.+..-+-+..+.+.+ -|+..
T Consensus 83 ~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l-~d~~~ 161 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRAL-IDGSF 161 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHH-HhccH
Confidence 8999998877554 44566778888899999999999999999999999999999875566667676763 56655
Q ss_pred HHHHHHHHHHHHHHh
Q 008746 190 QVVANCLSALQEIWS 204 (555)
Q Consensus 190 ~V~~~a~~~L~~i~~ 204 (555)
.+..+.+.++..+..
T Consensus 162 ~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 162 SISESLLDTLLYLLD 176 (371)
T ss_pred hHHHHHHHHHHHHhC
Confidence 666666666666654
No 131
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.95 E-value=21 Score=40.99 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=83.1
Q ss_pred ccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHH-HHHHHHHHHHHHhhccccchHhhhHHhhhc
Q 008746 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQV-VANCLSALQEIWSLEASTSEEASREREALI 221 (555)
Q Consensus 143 ~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V-~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll 221 (555)
+.-|++|-+|++|=.-+..+.+. |++...+....-+|..+.. +.+|..-|-.......... + .|.+-.-+
T Consensus 12 ~T~d~d~~~R~~AE~~L~q~~K~-------pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~-~-~~g~~~~I 82 (1010)
T KOG1991|consen 12 ATIDSDAKERKAAEQQLNQLEKQ-------PGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSH-E-APGRPFGI 82 (1010)
T ss_pred HhcCCChHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCcc-C-CCCCcCCC
Confidence 34466699999998888887752 6777777776556665554 6555554544322222110 0 00000001
Q ss_pred ---cHHHHH-HHHhhcCCCChhHHHHHHHHHHccC-CCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Q 008746 222 ---SKPVIY-YLLNRIKEFSEWAQCLVLELVAKYV-PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (555)
Q Consensus 222 ---~~~~~~-~L~~~l~~~~pw~q~~iL~~L~~~~-~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~ 289 (555)
.++.++ .++..+....+-.++.+-.++.... .+-|+.+-.+.+.+..+|++.+.+.++.|.-++..+.
T Consensus 83 ~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~ 155 (1010)
T KOG1991|consen 83 PEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLF 155 (1010)
T ss_pred ChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHH
Confidence 122232 3555444555666666666775543 3345667789999999999999999999888876554
No 132
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=4.8 Score=40.82 Aligned_cols=163 Identities=19% Similarity=0.262 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHccCC-CCHHHHH-----HHHHHHhhcCCHHHHHHHHHHHHHHhcccCcHH------HHHHHHHHHhhcc
Q 008746 354 VKKLKLEMLTAVANE-SNTYEIV-----TELCEYAANVDIPIARESIRAVGKIALQQYDVN------AIVDRLLQFLEME 421 (555)
Q Consensus 354 Ir~~aL~iL~~l~~~-~N~~~Iv-----~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~~------~~i~~ll~ll~~~ 421 (555)
=|..+|+-|-.++.. +|...++ .-+..|+.+.+.++|+.+.+.||.++++.|.+. .....++..++..
T Consensus 99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~ 178 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD 178 (342)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC
Confidence 345555555444422 3433332 223448888999999999999999999988752 2466777777754
Q ss_pred c-chhHHHHHHHHHHHHHhCCCCcchH-----HHHHhhhcccCCCchHHHHHHHHHHhccccCCCC-----hHHHHHHHH
Q 008746 422 K-DYVTAEALVLVKDLLRKYPQWSHDC-----IAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD-----APYILESLT 490 (555)
Q Consensus 422 ~-~~v~~e~i~~i~~ii~~~~~~~~~~-----~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~-----~~~~l~~l~ 490 (555)
+ ..+...++.++..++++++.-+... ...+...+...-.+..+++.++.+++-+...... .+..+....
T Consensus 179 ~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~ 258 (342)
T KOG2160|consen 179 DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVL 258 (342)
T ss_pred CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Confidence 3 4566778888888888877532211 1234444433335677888888888766544322 223344444
Q ss_pred HhhhcCCcHHHHHHHHHHHHHHHhcC
Q 008746 491 ENWEEEPSAEVRLHLLTAVMKCFFKR 516 (555)
Q Consensus 491 ~~~~~e~~~~vr~~~L~a~~Kl~~~~ 516 (555)
..+....+.+++..++++..++....
T Consensus 259 ~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 259 ENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHHH
Confidence 44444444777888888777765543
No 133
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.35 E-value=0.25 Score=31.25 Aligned_cols=28 Identities=39% Similarity=0.551 Sum_probs=23.3
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 008746 176 PPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 176 ~~~l~~lll~d~d~~V~~~a~~~L~~i~~ 204 (555)
++.+.++ ++|+++.|+.+|+..|..+.+
T Consensus 2 lp~l~~~-l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQL-LNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHH-HT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHHHHHHHHh
Confidence 5677787 699999999999999998865
No 134
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.15 E-value=1.2 Score=48.59 Aligned_cols=149 Identities=21% Similarity=0.261 Sum_probs=97.7
Q ss_pred hhhhH-HHHHHHHhhccCCCChHHHHHHHHHHHHHhh-hCCCcc--cCCCc----hHHHHHHHhcCCChHHHHHHHHHHH
Q 008746 129 VANLV-EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH-ISAPTC--IDADF----PPTLKHLMLNDPDPQVVANCLSALQ 200 (555)
Q Consensus 129 ~~ei~-~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~-~~p~~~--~~~~~----~~~l~~lll~d~d~~V~~~a~~~L~ 200 (555)
..+|. ...-|.+-+.|.-+|..||-.|+.-+...|. .+|+.- ..... ...+.++ +.|+-|+|++.|+..++
T Consensus 167 Veeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~L-L~d~~p~VRS~a~~gv~ 245 (1005)
T KOG1949|consen 167 VEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSL-LEDPYPMVRSTAILGVC 245 (1005)
T ss_pred HHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHH
Confidence 34554 3445666688999999999999999888885 455541 10111 2356666 69999999999998888
Q ss_pred HHHhhccccchHhhhHHhhhccHHHHHHHHhhcC-----CCChhHHHHHHHHHHccC--CCChhHHHHHHHHHHHHhccC
Q 008746 201 EIWSLEASTSEEASREREALISKPVIYYLLNRIK-----EFSEWAQCLVLELVAKYV--PLDSNEIFDIMNLLEDRLQHA 273 (555)
Q Consensus 201 ~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~-----~~~pw~q~~iL~~L~~~~--~~~~~~~~~i~~~l~~~L~s~ 273 (555)
.+... .|.++.+.++..++..+. +.+.-.++...+-|.... |..-...+.+++++...++++
T Consensus 246 k~~s~-----------fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~ 314 (1005)
T KOG1949|consen 246 KITSK-----------FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDN 314 (1005)
T ss_pred HHHHH-----------HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhcc
Confidence 76432 466666656666665432 223356666666555543 333334455667777788888
Q ss_pred chHHHHHHHHHHHHhc
Q 008746 274 NGAVVLSTIKVFLHLT 289 (555)
Q Consensus 274 ~~aV~~eai~~i~~l~ 289 (555)
+..|..+++..+..+.
T Consensus 315 se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 315 SEKVRVAFVDMLLKIK 330 (1005)
T ss_pred chhHHHHHHHHHHHHH
Confidence 8888888887776554
No 135
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.91 E-value=18 Score=39.26 Aligned_cols=73 Identities=16% Similarity=0.069 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc--cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 008746 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC--IDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (555)
Q Consensus 130 ~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~--~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~ 203 (555)
.+++......+.+.+..++-.||+..+.-+..+...-.+.= .-..++..|.+. +-|..+.|+..|+.+|+...
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R-~~DRE~~VR~eAv~~L~~~Q 160 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSER-LFDREKAVRREAVKVLCYYQ 160 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHH
Confidence 34677777888888889999999998777766654332210 003355556666 46888888888888877654
No 136
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.84 E-value=3.1 Score=49.58 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=48.6
Q ss_pred HHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCCh------hhhHHHHHHHHhhccCCCChHHHHHHHHHH
Q 008746 86 YVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGV 159 (555)
Q Consensus 86 ~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~------~ei~~~l~~~i~~~l~d~~~~VRk~A~lal 159 (555)
-+..++...|+++.-++..|...|.+.+..+|--|...+|.+-. .+-.+.+...-...+.|.++.||-+++-+.
T Consensus 245 ~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~ 324 (1266)
T KOG1525|consen 245 LILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESI 324 (1266)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHh
Confidence 33344445566666666777777777777777777666666511 122233334444455666666666666666
Q ss_pred HHHhhhCCCcc
Q 008746 160 LKLYHISAPTC 170 (555)
Q Consensus 160 ~kl~~~~p~~~ 170 (555)
..++..+|+..
T Consensus 325 ~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 325 KQCLLNNPSIA 335 (1266)
T ss_pred HHHHhcCchhh
Confidence 66665555543
No 137
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.56 E-value=1.9 Score=43.59 Aligned_cols=106 Identities=12% Similarity=0.046 Sum_probs=71.0
Q ss_pred hccCCCChHHHHHHHHHHHHHhhhCCCcc---cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHh
Q 008746 142 LGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRERE 218 (555)
Q Consensus 142 ~~l~d~~~~VRk~A~lal~kl~~~~p~~~---~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~ 218 (555)
..++++++.||..|+..++.+.+.+|... .+.++...|...+..|.+-.|+..|+.+++.+..+++.. ....
T Consensus 131 ~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g-----~~~f 205 (342)
T KOG2160|consen 131 GYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG-----QDEF 205 (342)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH-----HHHH
Confidence 36788888888888888888888887653 235577777777667778888899999999887765521 0111
Q ss_pred hhccHHHHHHHHhhcCC--CChhHHHHHHHHHHccCCC
Q 008746 219 ALISKPVIYYLLNRIKE--FSEWAQCLVLELVAKYVPL 254 (555)
Q Consensus 219 ~ll~~~~~~~L~~~l~~--~~pw~q~~iL~~L~~~~~~ 254 (555)
..++ -+.-|.+.+.. .+.-+|.+++-++..+...
T Consensus 206 l~~~--G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 206 LKLN--GYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HhcC--CHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 1122 13334444444 5677888888888777543
No 138
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.22 E-value=0.52 Score=48.98 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=47.6
Q ss_pred HHHHHHHhHcC---CCChHHHHHHHHHhcCCCh---hhhHHHHHHHHhhccCCCChHHHHHHHHHH
Q 008746 100 LTINFLQRDCK---DEDPMIRGLALRSLCSLRV---ANLVEYLVGPLGLGLKDNNSYVRTVAVIGV 159 (555)
Q Consensus 100 l~in~l~kDL~---~~n~~vr~lAL~~L~~i~~---~ei~~~l~~~i~~~l~d~~~~VRk~A~lal 159 (555)
...+.+.-||+ +..|..|+-|++++...++ ++....++|.+.++|.+++.-|+.-||.|+
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 33455556776 6779999999999988755 677788999999999999999999999885
No 139
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=91.05 E-value=7.9 Score=44.12 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=78.0
Q ss_pred HHHHHHHhHcC-CCChHHHHHHHHHhcCC---C-hhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc-cCC
Q 008746 100 LTINFLQRDCK-DEDPMIRGLALRSLCSL---R-VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC-IDA 173 (555)
Q Consensus 100 l~in~l~kDL~-~~n~~vr~lAL~~L~~i---~-~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~-~~~ 173 (555)
.++-.+.+.+. +.-.-++-.|++.+.++ + ...+.+.+.-.+..+.+|+-..|||+++-++.++...+|-.+ ...
T Consensus 576 ~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~ 655 (1529)
T KOG0413|consen 576 DVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSS 655 (1529)
T ss_pred HHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhH
Confidence 34455666665 44455666777766654 2 245667777778888899999999999999999999999876 236
Q ss_pred CchHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 008746 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (555)
Q Consensus 174 ~~~~~l~~lll~d~d~~V~~~a~~~L~~i~ 203 (555)
.|...+... ++|.+..|...|..++....
T Consensus 656 ~wl~~li~~-~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 656 KWLHTLISM-LNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred HHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Confidence 788888887 69999999999988776654
No 140
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.44 E-value=2.7 Score=38.35 Aligned_cols=118 Identities=20% Similarity=0.232 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhC-Ccccccccceee------eccCCcHHHHHHHHHHHHHccCCCCHH
Q 008746 300 YERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA-PFIFASDYKHFY------CQYNEPSYVKKLKLEMLTAVANESNTY 372 (555)
Q Consensus 300 l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~-p~~~~~~~~~f~------~~~~dd~~Ir~~aL~iL~~l~~~~N~~ 372 (555)
+++...-+..+++++++.-|+.|+..+...+..+ ++.|..|...++ +..+++..++..++..|..+
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l------- 95 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL------- 95 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-------
Confidence 3444555667899999999999999999998886 677755543221 23455566666666655444
Q ss_pred HHHHHHHHHhhcCCHHHHHH-HHHHHHHHhcccCcHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCC
Q 008746 373 EIVTELCEYAANVDIPIARE-SIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQW 443 (555)
Q Consensus 373 ~Iv~eL~~y~~~~d~~~~~~-~i~~i~~la~~~~~~~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~ 443 (555)
..+.... +++.++ +. |....++..+++++.. ......++..+..++..||..
T Consensus 96 ------~~~~~~~-p~l~Rei~t----------p~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 96 ------FDLIRGK-PTLTREIAT----------PNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred ------HHHhcCC-CchHHHHhh----------ccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 2333322 233322 12 2222356677777664 467778889999999999874
No 141
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=90.31 E-value=1.3 Score=48.53 Aligned_cols=135 Identities=18% Similarity=0.153 Sum_probs=83.0
Q ss_pred HHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHH--HHHHHHHhHcCCCChHHHHHHHHHhcCCCh----hhhHHHHHHH
Q 008746 66 GEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL--LTINFLQRDCKDEDPMIRGLALRSLCSLRV----ANLVEYLVGP 139 (555)
Q Consensus 66 ~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~--l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~ei~~~l~~~ 139 (555)
+.+++++.++|-.+|-+..-++..|.+.=++..+ -+...+...+.|.|+.+|..++++|..+.. ..+...++..
T Consensus 333 p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~ 412 (690)
T KOG1243|consen 333 PVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRY 412 (690)
T ss_pred hhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHH
Confidence 3445777777777777777777777654332212 345777888888888888888888876522 2355556667
Q ss_pred HhhccCCCChHHHHHHHHHHHHHhhh-CCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHH
Q 008746 140 LGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (555)
Q Consensus 140 i~~~l~d~~~~VRk~A~lal~kl~~~-~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i 202 (555)
+.++-.|.++-+|-+...|++|+-.. .|... ..-+.....+. +.|+=+--+.+++.++...
T Consensus 413 ~ar~q~d~~~~irtntticlgki~~~l~~~~R-~~vL~~aftra-lkdpf~paR~a~v~~l~at 474 (690)
T KOG1243|consen 413 LARLQPDEHGGIRTNTTICLGKIAPHLAASVR-KRVLASAFTRA-LKDPFVPARKAGVLALAAT 474 (690)
T ss_pred HHhhCccccCcccccceeeecccccccchhhh-ccccchhhhhh-hcCCCCCchhhhhHHHhhc
Confidence 77777788888888888888888543 22211 12233333333 3444333466666555543
No 142
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=90.19 E-value=0.27 Score=33.67 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=24.5
Q ss_pred HHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHH
Q 008746 158 GVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSA 198 (555)
Q Consensus 158 al~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~ 198 (555)
|+..+...+|+....+.+.+.+... +.|++|+|+-+|+.+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~r-l~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRR-LSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHH-hcCCChHHHHHHHHH
Confidence 3445555666665445566666666 467777777766654
No 143
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.94 E-value=24 Score=39.41 Aligned_cols=192 Identities=16% Similarity=0.153 Sum_probs=104.0
Q ss_pred CchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC---ChhhhHHHHHHHHhhccCCCChHHH
Q 008746 76 DIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVR 152 (555)
Q Consensus 76 ~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i---~~~ei~~~l~~~i~~~l~d~~~~VR 152 (555)
....|++.+=++.... .++-..++.+.+.+ +.-.+..-..++..+... .++++++.+...++.--..+++++|
T Consensus 377 ~~~~r~~~lDal~~aG--T~~av~~i~~~I~~--~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~ 452 (618)
T PF01347_consen 377 KEQARKIFLDALPQAG--TNPAVKFIKDLIKS--KKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLR 452 (618)
T ss_dssp -HHHHHHHHHHHHHH---SHHHHHHHHHHHHT--T-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHH
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHH
Confidence 4456666666666653 23333444555555 222233333444444433 3456666665555443344689999
Q ss_pred HHHHHHHHHHhhhC-CC----------c-ccCCCchHHHHHHHh---cCCChHHHHHHHHHHHHHHhhccccchHhhhHH
Q 008746 153 TVAVIGVLKLYHIS-AP----------T-CIDADFPPTLKHLML---NDPDPQVVANCLSALQEIWSLEASTSEEASRER 217 (555)
Q Consensus 153 k~A~lal~kl~~~~-p~----------~-~~~~~~~~~l~~lll---~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~ 217 (555)
..|+++++.+.+.. .. . .....+++.+...+. ...|...+..++.+|..+.-..
T Consensus 453 ~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~----------- 521 (618)
T PF01347_consen 453 ETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPE----------- 521 (618)
T ss_dssp HHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GG-----------
T ss_pred HHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCch-----------
Confidence 99999999876422 11 0 111345555555432 4567788888899998775321
Q ss_pred hhhccHHHHHHHHhhcC---CCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccC--chHHHHHHHHHHHHhcCCc
Q 008746 218 EALISKPVIYYLLNRIK---EFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHA--NGAVVLSTIKVFLHLTLSM 292 (555)
Q Consensus 218 ~~ll~~~~~~~L~~~l~---~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~--~~aV~~eai~~i~~l~~~~ 292 (555)
.+..+...+. ..+...+..++..|+++....++ .+.+.+.+++.+. ++-|+.+|...++...|+.
T Consensus 522 -------~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~---~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~ 591 (618)
T PF01347_consen 522 -------SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE---KVREILLPIFMNTTEDPEVRIAAYLILMRCNPSP 591 (618)
T ss_dssp -------GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH---HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---H
T ss_pred -------hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH---HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCH
Confidence 2333433333 34678899999999987544443 4555666666553 4569999999888876653
No 144
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.67 E-value=0.96 Score=48.22 Aligned_cols=137 Identities=14% Similarity=0.038 Sum_probs=93.3
Q ss_pred HHHhh-hhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHh-HcCCCChHHHHHHHHHhcCCCh--hhhHHHHHHHH
Q 008746 65 FGEMV-MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQR-DCKDEDPMIRGLALRSLCSLRV--ANLVEYLVGPL 140 (555)
Q Consensus 65 f~~vi-~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~k-DL~~~n~~vr~lAL~~L~~i~~--~ei~~~l~~~i 140 (555)
+-+.| +++.+.|..+|--|-+.+..-.-...+. =++.++.. ...|.|..||-.|..+||=++- ++.. +..
T Consensus 517 add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~--~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~l----v~t 590 (926)
T COG5116 517 ADDYINELLYDKDSILRYNGVFSLALAYVGTGNL--GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLL----VGT 590 (926)
T ss_pred HHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc--hhHhhhheeecccCchHHHHHHHHheeeeEecCcchh----hHH
Confidence 34455 5778888888887777665544333332 23344444 3688999999999999998754 4432 333
Q ss_pred hhccC-CCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHH-HhhccccchH
Q 008746 141 GLGLK-DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEI-WSLEASTSEE 212 (555)
Q Consensus 141 ~~~l~-d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i-~~~~~~~~~~ 212 (555)
.++|+ +.|++||-..+.|++-.+.-..+ .-.++.|..+ ..|++..|+.+|+.++..| .+.+|.....
T Consensus 591 velLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L-~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 591 VELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEAL-MYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred HHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHH-hhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 34444 45899999999998877654433 3467788887 5999999999999888866 4656655443
No 145
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.37 E-value=0.64 Score=39.68 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHhcCCC-----hhhhHHH--HHHHHhhccCCCChHHHHHHHHHHHHHhh
Q 008746 112 EDPMIRGLALRSLCSLR-----VANLVEY--LVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (555)
Q Consensus 112 ~n~~vr~lAL~~L~~i~-----~~ei~~~--l~~~i~~~l~d~~~~VRk~A~lal~kl~~ 164 (555)
.++.+.+.|+.-||.+. ...+++. .-..|.++++|+++.||+.|+.|+.++..
T Consensus 56 ~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 56 DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35555566666655541 1223322 34567789999999999999999999864
No 146
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=89.07 E-value=2.9 Score=34.42 Aligned_cols=64 Identities=9% Similarity=0.088 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 008746 259 IFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAV 322 (555)
Q Consensus 259 ~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~a 322 (555)
...+++.+...+.+.++-|++.|..+++.+.....+.....+..+-..|.++..+.++++|..|
T Consensus 25 l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 3457778888889999999999999998886543221111234555667788889999999887
No 147
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=88.97 E-value=32 Score=35.86 Aligned_cols=204 Identities=17% Similarity=0.178 Sum_probs=126.8
Q ss_pred HhcCCCchhHHHHHHHHHHHHhhCCc---ccccccceeeec----cCCcHHHHHHHHHHHHHccCCC-CH----HHHHHH
Q 008746 310 LVSSGSPEQSYAVLSHLHILVMRAPF---IFASDYKHFYCQ----YNEPSYVKKLKLEMLTAVANES-NT----YEIVTE 377 (555)
Q Consensus 310 ll~~~~~~~ry~aL~~l~~l~~~~p~---~~~~~~~~f~~~----~~dd~~Ir~~aL~iL~~l~~~~-N~----~~Iv~e 377 (555)
++++ +.++|-.|++.+..++..... +.+.|+..|.+. .+....=|..||.+..++.+-. +. ..|+.-
T Consensus 34 lL~~-~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra 112 (371)
T PF14664_consen 34 LLSD-SKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA 112 (371)
T ss_pred HCCC-cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 4554 499999999999877654432 345577766532 2333556889999998876552 22 457888
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHhcccCcH-HH--HHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchH-----HH
Q 008746 378 LCEYAANVDIPIARESIRAVGKIALQQYDV-NA--IVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDC-----IA 449 (555)
Q Consensus 378 L~~y~~~~d~~~~~~~i~~i~~la~~~~~~-~~--~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~-----~~ 449 (555)
+...+.+.++.++.-++..+++++...|+. .+ =+.++++.+..+.-.+.+-++..+-.++ ..|+.+.+. +.
T Consensus 113 lvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~ 191 (371)
T PF14664_consen 113 LVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLE 191 (371)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHH
Confidence 888888888999999999999999999983 33 3677777766543233333334443333 345544321 11
Q ss_pred HH-hhhcccC----C-Cch---H---HHHHHHHHHhccccCCC---ChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh
Q 008746 450 VV-GSISSQN----V-QEP---K---AKAALIWMLGEYSQDMQ---DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFF 514 (555)
Q Consensus 450 ~l-~~l~~~~----~-~~~---~---~~~~~~wiiGEy~~~~~---~~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~ 514 (555)
.+ .-.. +. . .+. . .+.++.-++--+...+- +.-.-++.+++.+.... +++|..++..+..++-
T Consensus 192 ~l~apft-d~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~-~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 192 SLLAPFT-DFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN-PEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHhhh-hhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC-HHHHHHHHHHHHHHHC
Confidence 11 1111 11 1 111 1 23445555555554441 12256788888777776 8999999999999876
Q ss_pred cCC
Q 008746 515 KRP 517 (555)
Q Consensus 515 ~~p 517 (555)
..+
T Consensus 270 ik~ 272 (371)
T PF14664_consen 270 IKP 272 (371)
T ss_pred CCC
Confidence 543
No 148
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.89 E-value=1.5 Score=37.41 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=44.1
Q ss_pred HHHHHHHHHHh-ccCchHHHHHHHHHHHHhcCCcchhHHHHHH--HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhC
Q 008746 260 FDIMNLLEDRL-QHANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (555)
Q Consensus 260 ~~i~~~l~~~L-~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~--~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~ 333 (555)
..++..|..+| .+.++.++--|+.-|.++....+..+ .+++ .....+..|++++|+++||-||.++..++..+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr-~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR-NIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH-HHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH-HHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 34666666777 34455555556666655443333322 2222 23344668899999999999999999887543
No 149
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.74 E-value=36 Score=36.21 Aligned_cols=102 Identities=18% Similarity=0.190 Sum_probs=71.0
Q ss_pred HHHHhHcCCCChHHHHHHHHHhcCCCh--h----hhHHHHHHHHhhccCC-CChHHHHHHHHHHHHHhhhCCCcccCC--
Q 008746 103 NFLQRDCKDEDPMIRGLALRSLCSLRV--A----NLVEYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISAPTCIDA-- 173 (555)
Q Consensus 103 n~l~kDL~~~n~~vr~lAL~~L~~i~~--~----ei~~~l~~~i~~~l~d-~~~~VRk~A~lal~kl~~~~p~~~~~~-- 173 (555)
-++-+...||+..+|++|+|.|++..+ | .....++..|...|-| .+..|--.|+.|+.++..+-.+.-..+
T Consensus 261 ~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~ 340 (533)
T KOG2032|consen 261 LSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL 340 (533)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence 345556688999999999999999743 2 2344555556666555 478999999999998864332211112
Q ss_pred -CchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 174 -DFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 174 -~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
++...+..+ ..|.++.++.+|+.++..+++-
T Consensus 341 l~ialrlR~l-~~se~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 341 LNIALRLRTL-FDSEDDKMRAAAFVLFGALAKL 372 (533)
T ss_pred hhHHHHHHHH-HHhcChhhhhhHHHHHHHHHHH
Confidence 233456666 5888999999999999888663
No 150
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=88.71 E-value=33 Score=35.74 Aligned_cols=360 Identities=14% Similarity=0.127 Sum_probs=161.9
Q ss_pred CCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChH
Q 008746 111 DEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (555)
Q Consensus 111 ~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~ 190 (555)
..|+.....-+.-++.+..++..+.+...+-..++.....++ +.+.+...+. +..|...+. + +.+.|+.
T Consensus 61 ~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~------lf~~~a~~~k---~~~~~~fl~-l-l~r~d~~ 129 (442)
T KOG2759|consen 61 ANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD------LFHDYAHKLK---RTEWLSFLN-L-LNRQDTF 129 (442)
T ss_pred cccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH------HHHHHHHhhh---ccchHHHHH-H-HhcCChH
Confidence 345566666677777777788777777777676665544333 2222222222 234555554 3 4677877
Q ss_pred HHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCC-CChhHHHHHHHHHHccCCCChhH-HH---HHHHH
Q 008746 191 VVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE-FSEWAQCLVLELVAKYVPLDSNE-IF---DIMNL 265 (555)
Q Consensus 191 V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~-~~pw~q~~iL~~L~~~~~~~~~~-~~---~i~~~ 265 (555)
...-+...+..+....+. .....-+.- ....|-+++.. .++-......++|..+...++-. ++ +=...
T Consensus 130 iv~~~~~Ils~la~~g~~------~~~~~e~~~-~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~ 202 (442)
T KOG2759|consen 130 IVEMSFRILSKLACFGNC------KMELSELDV-YKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSL 202 (442)
T ss_pred HHHHHHHHHHHHHHhccc------cccchHHHH-HHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchh
Confidence 776455555555443221 100000100 12223333333 22222233334444433222210 00 01122
Q ss_pred HHHHhcc--CchHHHHHHHHHHHHhcCCcchhHHHHHH--HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccccccc
Q 008746 266 LEDRLQH--ANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (555)
Q Consensus 266 l~~~L~s--~~~aV~~eai~~i~~l~~~~~~~~~~~l~--~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~ 341 (555)
+...+.| .+-=+.|+.+-++..++-+.. ..+. +. .+.+.|...+.+ ..|.-+.+.+..++.+
T Consensus 203 l~~~l~s~~~~~QlQYqsifciWlLtFn~~-~ae~-~~~~~li~~L~~Ivk~---~~KEKV~Rivlai~~N--------- 268 (442)
T KOG2759|consen 203 LIRILASTKCGFQLQYQSIFCIWLLTFNPH-AAEK-LKRFDLIQDLSDIVKE---STKEKVTRIVLAIFRN--------- 268 (442)
T ss_pred hHHHHhccCcchhHHHHHHHHHHHhhcCHH-HHHH-HhhccHHHHHHHHHHH---HHHHHHHHHHHHHHHH---------
Confidence 3333322 233367777777765543221 1111 11 122223333332 1333334433333222
Q ss_pred ceeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCc---HHHHHHHH-HHH
Q 008746 342 KHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD---VNAIVDRL-LQF 417 (555)
Q Consensus 342 ~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~---~~~~i~~l-l~l 417 (555)
.|...++.+.|+.+ ...|.. .++...++-|.+- .-+|+++..++-..-..+...+-+ ...|..-+ ...
T Consensus 269 ---ll~k~~~~~~~k~~---~~~mv~-~~v~k~l~~L~~r-kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~ 340 (442)
T KOG2759|consen 269 ---LLDKGPDRETKKDI---ASQMVL-CKVLKTLQSLEER-KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGR 340 (442)
T ss_pred ---HhccCchhhHHHHH---HHHHHh-cCchHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCC
Confidence 11223333333322 122211 1334444433322 335666666554444444433222 11222111 112
Q ss_pred hhcccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCCchHHHHHHHHHHhccccCCCChHHHHHHH------HH
Q 008746 418 LEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESL------TE 491 (555)
Q Consensus 418 l~~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~~~~~l~~l------~~ 491 (555)
|.-...+..+.-|.- ++-+-+.+. -.++.++.+++ +.-.+|.+.++++.=||||....|....+++.+ .+
T Consensus 341 L~WSP~Hk~e~FW~e--Na~rlnenn-yellkiL~~lL-e~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~ 416 (442)
T KOG2759|consen 341 LEWSPVHKSEKFWRE--NADRLNENN-YELLKILIKLL-ETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMN 416 (442)
T ss_pred cCCCccccccchHHH--hHHHHhhcc-HHHHHHHHHHH-hcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHH
Confidence 221222333333321 111111221 12344555554 555689999999999999999998766666543 33
Q ss_pred hhhcCCcHHHHHHHHHHHHHHHhc
Q 008746 492 NWEEEPSAEVRLHLLTAVMKCFFK 515 (555)
Q Consensus 492 ~~~~e~~~~vr~~~L~a~~Kl~~~ 515 (555)
...-++ ++||..+|.|+=|+...
T Consensus 417 Llnh~d-~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 417 LLNHED-PEVRYHALLAVQKLMVH 439 (442)
T ss_pred HhcCCC-chHHHHHHHHHHHHHhh
Confidence 334455 99999999999887543
No 151
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=88.06 E-value=34 Score=37.59 Aligned_cols=174 Identities=16% Similarity=0.111 Sum_probs=113.7
Q ss_pred HcCCCChHHHHHHHHHhcCCCh----------hhhHHHHHHH-HhhccCCCChHHHHHHHHHHHHHhh----hCCCcccC
Q 008746 108 DCKDEDPMIRGLALRSLCSLRV----------ANLVEYLVGP-LGLGLKDNNSYVRTVAVIGVLKLYH----ISAPTCID 172 (555)
Q Consensus 108 DL~~~n~~vr~lAL~~L~~i~~----------~ei~~~l~~~-i~~~l~d~~~~VRk~A~lal~kl~~----~~p~~~~~ 172 (555)
.++...+..|..+++-..-... .++.+..... ..-...+++..++.+|++|+..+-+ ...+ ...
T Consensus 339 sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~~ 417 (678)
T KOG1293|consen 339 SLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG-LKR 417 (678)
T ss_pred HHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC-Ccc
Confidence 5677888899888876544321 1222222222 2222346788999999999877643 2222 223
Q ss_pred CCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccC
Q 008746 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV 252 (555)
Q Consensus 173 ~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~ 252 (555)
.+....+..+ +.|++.+|..+++.+++.+.-.-.. -...++....+..+...+.++++-.+...+.+|+...
T Consensus 418 ~dv~~plvql-l~dp~~~i~~~~lgai~NlVmefs~-------~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 418 NDVAQPLVQL-LMDPEIMIMGITLGAICNLVMEFSN-------LKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred chhHHHHHHH-hhCcchhHHHHHHHHHHHHHhhccc-------HHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 5677788887 6999999999999999988643221 1223344345777888889999999999999999976
Q ss_pred CCChhH-HHHH-----HHHHHHHhccCchHHHHHHHHHHHHhcC
Q 008746 253 PLDSNE-IFDI-----MNLLEDRLQHANGAVVLSTIKVFLHLTL 290 (555)
Q Consensus 253 ~~~~~~-~~~i-----~~~l~~~L~s~~~aV~~eai~~i~~l~~ 290 (555)
-...++ .+.. .+.+..+.++.+.+|.-+|.+++-.+..
T Consensus 490 f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 490 FNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred hcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 443332 2222 3345556677888888877777766544
No 152
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=86.83 E-value=23 Score=32.74 Aligned_cols=150 Identities=16% Similarity=0.104 Sum_probs=80.4
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhhcccc-hhHHHHHHHHHH
Q 008746 357 LKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKD-YVTAEALVLVKD 435 (555)
Q Consensus 357 ~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~~~~i~~ll~ll~~~~~-~v~~e~i~~i~~ 435 (555)
+++.-+..=.++.|.+.+++++.....+.+++....++..|...+..-|......-.+...+..... .+....+..+..
T Consensus 2 r~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~~ 81 (209)
T PF02854_consen 2 RKVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQE 81 (209)
T ss_dssp HHHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 3444445545599999999999988777789999999999999988877643333333333433222 445454444443
Q ss_pred HHHhCCCCcchHHHHHhhhcccCCCchHHHHHHHHHHhcc-ccCCCC---hHHHHHHHHHhhhc-----C--CcHHHHHH
Q 008746 436 LLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEY-SQDMQD---APYILESLTENWEE-----E--PSAEVRLH 504 (555)
Q Consensus 436 ii~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy-~~~~~~---~~~~l~~l~~~~~~-----e--~~~~vr~~ 504 (555)
-+.... ... -... .......-..+.+..+||- ....-. ..+++..++..... . ...+.=..
T Consensus 82 ~f~~~~--~~~---~~~~---~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~~~~~~ie~~~~ 153 (209)
T PF02854_consen 82 EFEERY--SNE---ELEE---NRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPPPDEENIECLCT 153 (209)
T ss_dssp HHHHHT---HH---HHHH---HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHHTCHHHHHHHHH
T ss_pred HHHHhh--hhh---hHHH---HHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccCCCcHhHHHHHHH
Confidence 333211 000 0000 0111223345667777773 333322 23445555544433 0 11344445
Q ss_pred HHHHHHHHHh
Q 008746 505 LLTAVMKCFF 514 (555)
Q Consensus 505 ~L~a~~Kl~~ 514 (555)
+|..+++.+.
T Consensus 154 lL~~~G~~l~ 163 (209)
T PF02854_consen 154 LLKTCGKKLE 163 (209)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666777665
No 153
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=86.72 E-value=2.5 Score=47.88 Aligned_cols=126 Identities=13% Similarity=0.156 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHhHcC-CCChHHHHHHHHHhcCCChhh--hHHHHHHHHhhccCCCChHHHHHH
Q 008746 79 LKKMCYLYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSLRVAN--LVEYLVGPLGLGLKDNNSYVRTVA 155 (555)
Q Consensus 79 ~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~-~~n~~vr~lAL~~L~~i~~~e--i~~~l~~~i~~~l~d~~~~VRk~A 155 (555)
++..|.+++...-=.+.+++--.+..|.+.|+ +....+|..-+-+||.++..= |.+-.+|-|...|.|+++.|||-+
T Consensus 947 vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt 1026 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQT 1026 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHH
Confidence 55666666655433455666667788889886 455788888888999998754 888999999999999999999999
Q ss_pred HHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 008746 156 VIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (555)
Q Consensus 156 ~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~ 206 (555)
.+-+.++.+..=--..-.-|+..+..+ =|.++.++.-|=..+.++.+.+
T Consensus 1027 ~ilL~rLLq~~~vKw~G~Lf~Rf~l~l--~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1027 IILLARLLQFGIVKWNGELFIRFMLAL--LDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred HHHHHHHHhhhhhhcchhhHHHHHHHH--cccCHHHHHHHHHHHHHHHhhc
Confidence 999999875321000001244555554 4789999999988888887643
No 154
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=86.49 E-value=17 Score=41.69 Aligned_cols=180 Identities=15% Similarity=0.185 Sum_probs=120.1
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCC-Ccch----hHHHhhhhc-CCCCchhHHHHHHHHHHhcCCC-
Q 008746 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGI-DVSA----VFGEMVMCS-ATSDIVLKKMCYLYVGNYAKVN- 94 (555)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~-d~s~----lf~~vi~~~-~s~~~~~Krl~yl~l~~~~~~~- 94 (555)
+.++-..|+....|+ +-++|++++..++-.+..-. +.+. ++.-.++.. -..|..+-.+.-..+..++...
T Consensus 251 ~~ki~~~l~t~~~s~---~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 251 LSKITKNLETEMLSK---KWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhcChHHHHhhhcc---chHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 344555555544443 34689999999988776533 2222 222223322 2344444444444444443322
Q ss_pred ---ChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCC-cc
Q 008746 95 ---PDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP-TC 170 (555)
Q Consensus 95 ---~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~-~~ 170 (555)
...+..+.|.|..-+.+..+.+|..++.++=.+...--...+.+.|...+.+.+|-+|--....+.+.++..+. .+
T Consensus 328 ~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 328 PLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred hhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 34567888999999999999999887776665555444456778888999999999999988889998887763 22
Q ss_pred cC---CCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 171 ID---ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 171 ~~---~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
.. ....+.+... .+|.|..|+.+|..++..+.+.
T Consensus 408 ~~~t~~~l~p~~~~~-~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKH-INDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred chhhHHHHhHHHhhh-ccCCcHHHHHHHHHHHHHHHHH
Confidence 11 3456666665 5899999999999999887653
No 155
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=86.11 E-value=18 Score=36.60 Aligned_cols=61 Identities=21% Similarity=0.169 Sum_probs=39.7
Q ss_pred HHHHhHcCCCChHHHHHHHHHhcCC--------ChhhhHHHHHHHHhhccCCCC--hHHHHHHHHHHHHHh
Q 008746 103 NFLQRDCKDEDPMIRGLALRSLCSL--------RVANLVEYLVGPLGLGLKDNN--SYVRTVAVIGVLKLY 163 (555)
Q Consensus 103 n~l~kDL~~~n~~vr~lAL~~L~~i--------~~~ei~~~l~~~i~~~l~d~~--~~VRk~A~lal~kl~ 163 (555)
..+.+-++......+.+|+++++-+ ...++.+.+.|.+++.+.|.+ +-+|-.++.|+.-+.
T Consensus 89 ~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~ 159 (309)
T PF05004_consen 89 DALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICT 159 (309)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHH
Confidence 4555555555555666776665543 246788999999999998875 456656555555543
No 156
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.82 E-value=6.6 Score=34.37 Aligned_cols=86 Identities=17% Similarity=0.101 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC----Ch---hhhHH-HHHHHHhhccCC---CChH
Q 008746 82 MCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL----RV---ANLVE-YLVGPLGLGLKD---NNSY 150 (555)
Q Consensus 82 l~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~---~ei~~-~l~~~i~~~l~d---~~~~ 150 (555)
-+.+.+.-....+++..-.++..|+|-++++||.++-.||..|-.+ +. .+++. .....+.+++.. .++.
T Consensus 19 ~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~ 98 (133)
T cd03561 19 ALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPK 98 (133)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHH
Confidence 3444455555555667778889999999999999999998877654 22 22222 333345555543 4678
Q ss_pred HHHHHHHHHHHHhhhCC
Q 008746 151 VRTVAVIGVLKLYHISA 167 (555)
Q Consensus 151 VRk~A~lal~kl~~~~p 167 (555)
||++++..+..-....+
T Consensus 99 Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 99 VREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88887776665544333
No 157
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=85.67 E-value=39 Score=33.35 Aligned_cols=205 Identities=11% Similarity=0.066 Sum_probs=116.8
Q ss_pred hcCCCCchhHHHHHHHHHHhcCCCC------hHHHHHHHHHHhHcCCCChHHH--HHHHHHhcCCCh--hhhHHHHHHHH
Q 008746 71 CSATSDIVLKKMCYLYVGNYAKVNP------DLALLTINFLQRDCKDEDPMIR--GLALRSLCSLRV--ANLVEYLVGPL 140 (555)
Q Consensus 71 ~~~s~~~~~Krl~yl~l~~~~~~~~------e~~~l~in~l~kDL~~~n~~vr--~lAL~~L~~i~~--~ei~~~l~~~i 140 (555)
.++|+|...|.-|-.+++..+..-| +..-..++.+..-+.|. +.+. -.|+.+|.+... ++.+..++..+
T Consensus 7 ~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l 85 (262)
T PF14500_consen 7 YLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPALKGLLALVKMKNFSPESAVKILRSL 85 (262)
T ss_pred hhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHHHHHHHHHHhCcCCChhhHHHHHHHH
Confidence 4566677766655555554433222 22234445555555433 2221 123333333322 34444455454
Q ss_pred hhccC--CCChHHHHHHHHHHHHHhhhCCCccc--CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhH
Q 008746 141 GLGLK--DNNSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (555)
Q Consensus 141 ~~~l~--d~~~~VRk~A~lal~kl~~~~p~~~~--~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~ 216 (555)
.+... .-...+|..+..-+..+...+++.+. ..+++..+...+.+|+||..+.-+..++..+...-+
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--------- 156 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--------- 156 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc---------
Confidence 44332 22356777776666666665544331 146777777776789999999998888877755322
Q ss_pred HhhhccHHHHHHHHhhcC---------CC-Ch--hHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHH
Q 008746 217 REALISKPVIYYLLNRIK---------EF-SE--WAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKV 284 (555)
Q Consensus 217 ~~~ll~~~~~~~L~~~l~---------~~-~p--w~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~ 284 (555)
+ .+....+.+.+. .+ +| -....+-..|+.....++.-+...++.+.+.|.+.++.|...+.++
T Consensus 157 ----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~t 231 (262)
T PF14500_consen 157 ----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQT 231 (262)
T ss_pred ----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 1 123344444321 11 22 2345555566666656667777788888889999999999999998
Q ss_pred HHHhcC
Q 008746 285 FLHLTL 290 (555)
Q Consensus 285 i~~l~~ 290 (555)
+..+..
T Consensus 232 L~~c~~ 237 (262)
T PF14500_consen 232 LKACIE 237 (262)
T ss_pred HHHHHH
Confidence 876544
No 158
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.25 E-value=6.5 Score=39.13 Aligned_cols=119 Identities=15% Similarity=0.139 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCC-CChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC---Chhhh---HHHHHHHHhhccCCCChHHHH
Q 008746 81 KMCYLYVGNYAKV-NPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVANL---VEYLVGPLGLGLKDNNSYVRT 153 (555)
Q Consensus 81 rl~yl~l~~~~~~-~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i---~~~ei---~~~l~~~i~~~l~d~~~~VRk 153 (555)
+..|+....+-.- +|| .+.+...+.|.|.|+...+-+|..|..+ +.+.+ ...++..|.+-+++...-|-|
T Consensus 71 ~~e~~~sk~l~~fd~p~---~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~Vsr 147 (334)
T KOG2933|consen 71 SVEYIVSKNLSPFDDPE---AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSR 147 (334)
T ss_pred cHHHhhhcccCccCcHH---HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 5667777777543 355 4558888999999999999888777654 33333 334566667778899999999
Q ss_pred HHHHHHHHHhhhCCCcccCCCchHHHHHHHh---cCCChHHHHHHHHHHHHHHh
Q 008746 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLML---NDPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 154 ~A~lal~kl~~~~p~~~~~~~~~~~l~~lll---~d~d~~V~~~a~~~L~~i~~ 204 (555)
+|++++.-+|..+.+.+. +..+.+...|+ .+.+..|+..|-.+|..+..
T Consensus 148 aA~~t~~difs~ln~~i~--~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~ 199 (334)
T KOG2933|consen 148 AACMTLADIFSSLNNSID--QELDDLVTQLLHKASQDNRFVREDAEKALVAMVN 199 (334)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHh
Confidence 999999999987666552 23333322222 24567788888888877654
No 159
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.43 E-value=87 Score=36.30 Aligned_cols=429 Identities=13% Similarity=0.163 Sum_probs=211.6
Q ss_pred chhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChh-hhHHHHHHHHhhcc-----------
Q 008746 77 IVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVA-NLVEYLVGPLGLGL----------- 144 (555)
Q Consensus 77 ~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-ei~~~l~~~i~~~l----------- 144 (555)
++.|-..++|+..++..=-+..+=.++...+. .--.+.+--.++..+.+..+. .+...+.|.+.-.+
T Consensus 282 ~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~-~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~ 360 (1010)
T KOG1991|consen 282 PEYKEFAQMFLKNFAQGILEVFLKILEQWRQQ-LYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFN 360 (1010)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCC
Confidence 45666777777766543333333334444441 112355555667776665332 23333333332221
Q ss_pred --------CCCChHHHH-------------HHHHHHHHHhhhC-CCcccCCCchHHHHHHHh-------cCCChHHHHHH
Q 008746 145 --------KDNNSYVRT-------------VAVIGVLKLYHIS-APTCIDADFPPTLKHLML-------NDPDPQVVANC 195 (555)
Q Consensus 145 --------~d~~~~VRk-------------~A~lal~kl~~~~-p~~~~~~~~~~~l~~lll-------~d~d~~V~~~a 195 (555)
.|+..|+|| +|..++..+.++- ++.+ +.++..+...+. ...|+.-.-.|
T Consensus 361 d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGA 438 (1010)
T KOG1991|consen 361 DEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGA 438 (1010)
T ss_pred cccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhH
Confidence 356679998 3444455555544 6666 666666666542 12455555566
Q ss_pred HHHHHHHHhh--ccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCC---ChhHHHHHHHHHHHHh
Q 008746 196 LSALQEIWSL--EASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL---DSNEIFDIMNLLEDRL 270 (555)
Q Consensus 196 ~~~L~~i~~~--~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~---~~~~~~~i~~~l~~~L 270 (555)
+.++..++.. .+.++. +... .-.+.+.+....++.-.++.+...++.+|+.. ++......++.....+
T Consensus 439 L~~vgsl~~~L~K~s~~~----~~mE---~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l 511 (1010)
T KOG1991|consen 439 LRMVGSLASILLKKSPYK----SQME---YFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCL 511 (1010)
T ss_pred HHHHHHHHHHHccCCchH----HHHH---HHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHh
Confidence 6666665421 011000 1111 11344455555677788999999999999732 4555667777777777
Q ss_pred c-cCchHHHHHHHHHHHHhcCCcchh---HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccccc-------
Q 008746 271 Q-HANGAVVLSTIKVFLHLTLSMTDV---HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFAS------- 339 (555)
Q Consensus 271 ~-s~~~aV~~eai~~i~~l~~~~~~~---~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~------- 339 (555)
. ++.-.|..||+-++-.+-.+.... -.+.+.-+..-|.++.+.-+.+.---++ ..++..+++-+.|
T Consensus 512 ~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vm---e~iV~~fseElsPfA~eL~q 588 (1010)
T KOG1991|consen 512 LNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVM---EKIVCKFSEELSPFAVELCQ 588 (1010)
T ss_pred ccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHH---HHHHHHHHHhhchhHHHHHH
Confidence 7 455568888877664332221111 1111222222334444433222222222 2444444332111
Q ss_pred cc-ceee-ecc---CC---cHHHHHHHHHHHHHcc----CCCCHHHHHHHHH-------HHhhcCC-HHHHHHHHHHHHH
Q 008746 340 DY-KHFY-CQY---NE---PSYVKKLKLEMLTAVA----NESNTYEIVTELC-------EYAANVD-IPIARESIRAVGK 399 (555)
Q Consensus 340 ~~-~~f~-~~~---~d---d~~Ir~~aL~iL~~l~----~~~N~~~Iv~eL~-------~y~~~~d-~~~~~~~i~~i~~ 399 (555)
|+ ..|. |.. ++ +..=...|.-+|..+. .=+|...|+.+|- .++-..| .+|-+++..-+..
T Consensus 589 ~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~ 668 (1010)
T KOG1991|consen 589 NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSS 668 (1010)
T ss_pred HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 22 1221 111 11 1112233444443321 1234444555542 3433333 4566666665555
Q ss_pred HhcccCc---HHH-HHHHHHHHhhcccchhHHHHHHHHHHHHH-------hCCCCcchHHHHHhhhc-ccCCCchHHHHH
Q 008746 400 IALQQYD---VNA-IVDRLLQFLEMEKDYVTAEALVLVKDLLR-------KYPQWSHDCIAVVGSIS-SQNVQEPKAKAA 467 (555)
Q Consensus 400 la~~~~~---~~~-~i~~ll~ll~~~~~~v~~e~i~~i~~ii~-------~~~~~~~~~~~~l~~l~-~~~~~~~~~~~~ 467 (555)
+.-..++ .-| .+..+++.+...|-....+....+.+.+. .+|+...-+..+.++++ .+...+++...
T Consensus 669 ~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~- 747 (1010)
T KOG1991|consen 669 LTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCES- 747 (1010)
T ss_pred hhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHH-
Confidence 5544443 236 66778888777665555566666666543 23333222333444443 22334444432
Q ss_pred HHHHHhccccCCCC-----hHHHHHHHHHhhhc--CCcHHHHHHHHHHHHHHHhcCCchh
Q 008746 468 LIWMLGEYSQDMQD-----APYILESLTENWEE--EPSAEVRLHLLTAVMKCFFKRPPET 520 (555)
Q Consensus 468 ~~wiiGEy~~~~~~-----~~~~l~~l~~~~~~--e~~~~vr~~~L~a~~Kl~~~~p~~~ 520 (555)
+.-+++...-.+.+ .|-.++....+... ++ ...|..++..+.-.+..+|..+
T Consensus 748 a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~-s~~~~~~leVvinalyynP~lt 806 (1010)
T KOG1991|consen 748 ACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVET-SELRVMLLEVVINALYYNPKLT 806 (1010)
T ss_pred HHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHHcCcHHH
Confidence 23333332222222 45556666666655 55 7888888888877777787543
No 160
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=83.99 E-value=13 Score=33.59 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=24.6
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 008746 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 175 ~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~ 207 (555)
+.+.|.+++-+|.++.++..++.+++-++.-+|
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP 43 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDP 43 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc
Confidence 446666766667778888888888888876555
No 161
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=83.92 E-value=62 Score=34.24 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCc-ccccccceee-----eccCCcHHHHHHHHHHHHHccCCC
Q 008746 296 HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYKHFY-----CQYNEPSYVKKLKLEMLTAVANES 369 (555)
Q Consensus 296 ~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~-~~~~~~~~f~-----~~~~dd~~Ir~~aL~iL~~l~~~~ 369 (555)
++.++..+.+.|.....+.+...|-.-|.++..++..-|. ++.+|+..+. ++.-+|..++.-+|++|..+.+++
T Consensus 317 kQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 317 KQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 3555565666665555555555777777788888877775 4556654322 345555668888888888776665
No 162
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.78 E-value=45 Score=37.92 Aligned_cols=68 Identities=25% Similarity=0.206 Sum_probs=53.4
Q ss_pred HHHHhHcCCCChHHHHHHHHHhcCCCh------hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc
Q 008746 103 NFLQRDCKDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (555)
Q Consensus 103 n~l~kDL~~~n~~vr~lAL~~L~~i~~------~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~ 170 (555)
+--.--+.|+-+.+|+-||+.|..+-. ...-+-+.......+.|.++||--.|+-++..++..+|+.+
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i 803 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI 803 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh
Confidence 333345577889999999999998722 23456677788888999999999999998888888888765
No 163
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=83.68 E-value=3.1 Score=36.76 Aligned_cols=88 Identities=17% Similarity=0.068 Sum_probs=56.5
Q ss_pred CchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC---ChhhhH-----HHHHHHHhhccCCC
Q 008746 76 DIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVANLV-----EYLVGPLGLGLKDN 147 (555)
Q Consensus 76 ~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i---~~~ei~-----~~l~~~i~~~l~d~ 147 (555)
..+.---+.+.+......+++.+--++..|+|-|+++||.+...||..+-.+ +.+.+. ..++..+.+++.++
T Consensus 18 ~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~ 97 (140)
T PF00790_consen 18 LPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSK 97 (140)
T ss_dssp SSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccC
Confidence 3333344455666666667777888999999999999999999999887664 222221 22455555655433
Q ss_pred --ChH--HHHHHHHHHHHHh
Q 008746 148 --NSY--VRTVAVIGVLKLY 163 (555)
Q Consensus 148 --~~~--VRk~A~lal~kl~ 163 (555)
.+. ||+++...+..-.
T Consensus 98 ~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 98 KTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp TTHHHSHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHH
Confidence 233 8988775554443
No 164
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=83.31 E-value=58 Score=33.41 Aligned_cols=227 Identities=12% Similarity=0.121 Sum_probs=104.8
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc---------cC-CCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 008746 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---------ID-ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 138 ~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~---------~~-~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~ 207 (555)
..+...+..-.-..||-++.-...+.+..++.- .. ++++..|... -.+|.+...+-..|-++.+++.
T Consensus 79 ~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~g---y~~~dial~~g~mlRec~k~e~ 155 (335)
T PF08569_consen 79 YLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRG---YENPDIALNCGDMLRECIKHES 155 (335)
T ss_dssp HHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHG---GGSTTTHHHHHHHHHHHTTSHH
T ss_pred HHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHH---hcCccccchHHHHHHHHHhhHH
Confidence 334445555555666666665555555443321 01 2333333332 2344454555455667666532
Q ss_pred ccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhH--------HHHHHHHHHHHhccCchHHHH
Q 008746 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE--------IFDIMNLLEDRLQHANGAVVL 279 (555)
Q Consensus 208 ~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~--------~~~i~~~l~~~L~s~~~aV~~ 279 (555)
.|. .++..+.+.++++.+..++=-...-....++.+.-..+.. ...+......+++|.|.-...
T Consensus 156 -----l~~---~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 156 -----LAK---IILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp -----HHH---HHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred -----HHH---HHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 111 1122234555555433332223333333333322122221 123455667788999988899
Q ss_pred HHHHHHHHhcCCcch--hHHHHHHH--HHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCcHHHH
Q 008746 280 STIKVFLHLTLSMTD--VHQQVYER--IKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVK 355 (555)
Q Consensus 280 eai~~i~~l~~~~~~--~~~~~l~~--i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~~~~~dd~~Ir 355 (555)
.+++++.++-...+. +-..-+.. --..+..+|.++..++++-|...+.-.+.+ ++.|+.|+
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN---------------p~K~~~I~ 292 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN---------------PNKPPPIV 292 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH----------------SS-BHHHH
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC---------------CCCChHHH
Confidence 999999876432222 11111110 011234567777788888887776644433 33343333
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHhhcC--CHHHHHH---HHHHHHH
Q 008746 356 KLKLEMLTAVANESNTYEIVTELCEYAANV--DIPIARE---SIRAVGK 399 (555)
Q Consensus 356 ~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~--d~~~~~~---~i~~i~~ 399 (555)
+||. .|=+.++.-|..|..+. |.+|..+ +|+.|..
T Consensus 293 ----~iL~-----~Nr~kLl~fl~~f~~~~~~D~qf~~EK~~li~~i~~ 332 (335)
T PF08569_consen 293 ----DILI-----KNREKLLRFLKDFHTDRTDDEQFEDEKAYLIKQIES 332 (335)
T ss_dssp ----HHHH-----HTHHHHHHHHHTTTTT--S-CHHHHHHHHHHHHHHT
T ss_pred ----HHHH-----HHHHHHHHHHHhCCCCCCccccHHHHHHHHHHHHHh
Confidence 2232 25566666666665554 5556544 5555543
No 165
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=82.79 E-value=44 Score=42.90 Aligned_cols=277 Identities=16% Similarity=0.162 Sum_probs=136.1
Q ss_pred HHHHHHHhcCCChh--hhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCccc--------CCCchHHHHHHHhcC
Q 008746 117 RGLALRSLCSLRVA--NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI--------DADFPPTLKHLMLND 186 (555)
Q Consensus 117 r~lAL~~L~~i~~~--ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~--------~~~~~~~l~~lll~d 186 (555)
-..|.++++++... .....+-..+...+.+.++.+||.|++++..+++..+..-. .......+..+-+.|
T Consensus 461 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~ 540 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIAD 540 (2341)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccC
Confidence 66799999998664 34455555567778889999999999999999986655100 022334444443567
Q ss_pred CChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHH-----H
Q 008746 187 PDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----D 261 (555)
Q Consensus 187 ~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~-----~ 261 (555)
+||.++...+..+.+- .++ .+.++..++.++.++.+..=..|......+.+....+|.... .
T Consensus 541 ~~~~i~~~v~~~l~~~--~~~-----------~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~ 607 (2341)
T KOG0891|consen 541 TDPDIRIRVLSSLNER--FDA-----------QLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKT 607 (2341)
T ss_pred CCcchhhhHHhhhccc--hhh-----------hhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHH
Confidence 7777766665554410 000 111122333344444443334555555555555544442111 1
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccccccc
Q 008746 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (555)
Q Consensus 262 i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~ 341 (555)
.+.....+..+...-+--+++.-...+............+.+-..+...+.+.++.+--.++..+..++...........
T Consensus 608 ~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~ 687 (2341)
T KOG0891|consen 608 LLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWV 687 (2341)
T ss_pred HHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhcc
Confidence 11111112222222111222222211111111000000011111122234455666777788888888887764332222
Q ss_pred ceeeec------cCCcHHHHHHHHHHHHHccCCCCH--------HHHHHHHHHHhhcC-CHHHHHHHHHHHHHHhcccCc
Q 008746 342 KHFYCQ------YNEPSYVKKLKLEMLTAVANESNT--------YEIVTELCEYAANV-DIPIARESIRAVGKIALQQYD 406 (555)
Q Consensus 342 ~~f~~~------~~dd~~Ir~~aL~iL~~l~~~~N~--------~~Iv~eL~~y~~~~-d~~~~~~~i~~i~~la~~~~~ 406 (555)
+.+++. .......|+.++..+..++...-+ ..+++-|...+... ...+++++++.+|.++...|.
T Consensus 688 ~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~ 767 (2341)
T KOG0891|consen 688 DELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPY 767 (2341)
T ss_pred chHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchh
Confidence 311211 222244566666677777655543 11233333332222 345788899999988877664
No 166
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=82.63 E-value=35 Score=33.18 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=74.2
Q ss_pred ccCCCChHHHHHHHHHHHHHhhhCCCcc-cC----------CCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc--cc
Q 008746 143 GLKDNNSYVRTVAVIGVLKLYHISAPTC-ID----------ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA--ST 209 (555)
Q Consensus 143 ~l~d~~~~VRk~A~lal~kl~~~~p~~~-~~----------~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~--~~ 209 (555)
+++|+++.|.|.|+.|...+|+.-=..+ .. ..+.+.+... ..+.+++|+.+|+..+..+...-. ..
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~-~~~~~~gvk~~~iKFle~vIl~qs~~~~ 79 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSL-WDSENPGVKLAAIKFLERVILVQSPGSS 79 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHG-GGSSSHHHHHHHHHHHHHHHHHTS---T
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHhcCCCCC
Confidence 4788999999999999999986311100 00 1233455555 467799999999998887643111 00
Q ss_pred chHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCc--hHHHHHHHHHHHH
Q 008746 210 SEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHAN--GAVVLSTIKVFLH 287 (555)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~--~aV~~eai~~i~~ 287 (555)
..+.-.....-++ +..++.-.|.+...-| .+|+..+++.+...+++.. +.++..+++++..
T Consensus 80 ~~~~~~~~~~d~S-------L~~vp~~Hp~l~~~~L----------e~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~ 142 (239)
T PF11935_consen 80 DSPPRRGSPNDFS-------LSSVPPNHPLLNPQQL----------EAEANGLLDRLLDVLQSPHISSPLLTAIINSLSN 142 (239)
T ss_dssp TS---GGGTTS---------GGGS-TT-SSS-HHHH----------HHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHH
T ss_pred CCccccccccCCC-------HHHcCCCCCcCCHHHH----------HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 0000000000000 0111222232222211 1466778888888887655 5566677777665
Q ss_pred hcCCcchhHHHHHHHHHHHHHHH
Q 008746 288 LTLSMTDVHQQVYERIKAPLLTL 310 (555)
Q Consensus 288 l~~~~~~~~~~~l~~i~~~L~~l 310 (555)
+...-+.. ..++.+.|..|
T Consensus 143 Iak~RP~~----~~~Il~~ll~~ 161 (239)
T PF11935_consen 143 IAKQRPQF----MSRILPALLSF 161 (239)
T ss_dssp HHHHSGGG----HHHHHHHHHHH
T ss_pred HHHHhhHH----HHHHHHHHHhc
Confidence 54433322 34445554444
No 167
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=82.58 E-value=65 Score=34.06 Aligned_cols=175 Identities=14% Similarity=0.164 Sum_probs=107.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcH-----HHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHhCC-CCcc
Q 008746 373 EIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-----NAIVDRLLQFLEME-KDYVTAEALVLVKDLLRKYP-QWSH 445 (555)
Q Consensus 373 ~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~-----~~~i~~ll~ll~~~-~~~v~~e~i~~i~~ii~~~~-~~~~ 445 (555)
..+..|..-+.+.|+.=|..+-..+.++-.++++. ..+.+.+.+++... .-+...|++..+..++.+.+ ...+
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 35666777777888777766666666666677652 23456666666543 34567788888888888644 2222
Q ss_pred hHHHHHhhhcc--cCCC-chHHHHHHHHHHhccccCCCC-hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCc-hh
Q 008746 446 DCIAVVGSISS--QNVQ-EPKAKAALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-ET 520 (555)
Q Consensus 446 ~~~~~l~~l~~--~~~~-~~~~~~~~~wiiGEy~~~~~~-~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~-~~ 520 (555)
.-...+.+.+. .... .......+.+++..|...-+. +..+++.+++.|.... +.=+...|.-+..+.-..|+ +.
T Consensus 213 eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~-s~Kev~FL~el~~il~~~~~~~f 291 (409)
T PF01603_consen 213 EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTN-SQKEVLFLNELEEILEVLPPEEF 291 (409)
T ss_dssp HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCC-chhHHHHHHHHHHHHHhcCHHHH
Confidence 22223433331 2222 222345566777777665544 6789999999999887 77788888888888776653 22
Q ss_pred HHH---HHHHHHHhccCCCcchhhccccccc
Q 008746 521 QKV---LGAALAAGLADFHQVVFYGFFPPFS 548 (555)
Q Consensus 521 ~~~---l~~vl~~~~~d~d~evq~Ra~~~l~ 548 (555)
... +-..+..|..+.|..|=+||..++.
T Consensus 292 ~~i~~~lf~~la~ci~S~h~qVAErAl~~w~ 322 (409)
T PF01603_consen 292 QKIMVPLFKRLAKCISSPHFQVAERALYFWN 322 (409)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC
Confidence 222 3345678889999999999988765
No 168
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=82.56 E-value=36 Score=34.42 Aligned_cols=137 Identities=14% Similarity=0.201 Sum_probs=68.5
Q ss_pred CCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhc---cHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChh-----
Q 008746 186 DPDPQVVANCLSALQEIWSLEASTSEEASREREALI---SKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN----- 257 (555)
Q Consensus 186 d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll---~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~----- 257 (555)
.+++.++...+..+.++...+|....- ...+. ....+..+++.+...+++.+.....+|+.+....+.
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~----~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~ 143 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVEL----FLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL 143 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHH----HHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHH----HHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccch
Confidence 368889999999999999887742111 11110 011355566667778999999999988887543322
Q ss_pred ---HHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHH-HHHHHHHHHHh-------cCCCchhHHHHHHHH
Q 008746 258 ---EIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLV-------SSGSPEQSYAVLSHL 326 (555)
Q Consensus 258 ---~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l-~~i~~~L~~ll-------~~~~~~~ry~aL~~l 326 (555)
....+++.+...+++.+..+..-|++++..+-.. +.....+. ....+.+..++ +..+..+.|-++-.+
T Consensus 144 ~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~l 222 (312)
T PF03224_consen 144 VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCL 222 (312)
T ss_dssp HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHH
Confidence 1223444444545555555667777777665432 22222121 12333444455 234445667766554
Q ss_pred H
Q 008746 327 H 327 (555)
Q Consensus 327 ~ 327 (555)
=
T Consensus 223 W 223 (312)
T PF03224_consen 223 W 223 (312)
T ss_dssp H
T ss_pred H
Confidence 3
No 169
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.19 E-value=72 Score=36.41 Aligned_cols=184 Identities=16% Similarity=0.178 Sum_probs=112.9
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhcC--CCChH--HHHHHHHHHhHcCCCChHHHHHHHH---HhcCCChhhhHHHHH
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYAK--VNPDL--ALLTINFLQRDCKDEDPMIRGLALR---SLCSLRVANLVEYLV 137 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~~--~~~e~--~~l~in~l~kDL~~~n~~vr~lAL~---~L~~i~~~ei~~~l~ 137 (555)
+-..+..+..+-..+|--|...+..+++ ..... .-.+...+..-++|.|+++=-.|++ +||.+-...+.+.+.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~ 808 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLS 808 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHH
Confidence 4444555666777789999888888877 22222 1134455666778999999999999 777776666777666
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHH-H--hcCCChHHHHHHHHHHHHHHhhccccchHhh
Q 008746 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL-M--LNDPDPQVVANCLSALQEIWSLEASTSEEAS 214 (555)
Q Consensus 138 ~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~l-l--l~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~ 214 (555)
..-.+--....+.-|-+.--|++|+.+.-.+.+ ..+...+... | .+|+|..-+++++..+.++++....-
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~--~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~----- 881 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELV--FKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ----- 881 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHH--HHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh-----
Confidence 544433333335666667788888877666655 2333322222 1 46888888999999999988753210
Q ss_pred hHHhhhccHHHHHHHHhh-cCCCChhHHHHHHHHHHccCCCChhH
Q 008746 215 REREALISKPVIYYLLNR-IKEFSEWAQCLVLELVAKYVPLDSNE 258 (555)
Q Consensus 215 ~~~~~ll~~~~~~~L~~~-l~~~~pw~q~~iL~~L~~~~~~~~~~ 258 (555)
..+.+| +++..++.. -++.++.++-...+++........++
T Consensus 882 --vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d 923 (982)
T KOG4653|consen 882 --VSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED 923 (982)
T ss_pred --hhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh
Confidence 011122 133333332 23556667777777777665544443
No 170
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=81.99 E-value=1.1e+02 Score=35.81 Aligned_cols=255 Identities=18% Similarity=0.113 Sum_probs=132.8
Q ss_pred CCCcchhHHHhhh----hcCCCCchhHHHHHHHHHHhcCCC-ChHHHHHHHHHHh---HcC-CCChHHHHHHHHHhcCC-
Q 008746 58 GIDVSAVFGEMVM----CSATSDIVLKKMCYLYVGNYAKVN-PDLALLTINFLQR---DCK-DEDPMIRGLALRSLCSL- 127 (555)
Q Consensus 58 G~d~s~lf~~vi~----~~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~in~l~k---DL~-~~n~~vr~lAL~~L~~i- 127 (555)
|.|++...-.|++ .++..|..++--+-=.+....... ++++.-++.++.- -.+ +..++--|+||--|+.=
T Consensus 332 ~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 332 GEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred ccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 3444444334443 344555555433333333333222 4555555555544 222 23355567777777653
Q ss_pred -ChhhhHHHHHHHHhhccCCC--------ChHHHHHHHHHHHHHhhhCC-CcccCCCchHHHHHHH----hcCCChHHHH
Q 008746 128 -RVANLVEYLVGPLGLGLKDN--------NSYVRTVAVIGVLKLYHISA-PTCIDADFPPTLKHLM----LNDPDPQVVA 193 (555)
Q Consensus 128 -~~~ei~~~l~~~i~~~l~d~--------~~~VRk~A~lal~kl~~~~p-~~~~~~~~~~~l~~ll----l~d~d~~V~~ 193 (555)
--|...+.++|.|.+.+.-. ...||=+|+..+-.+++-|. +.+ ..+...|...| +-|++..++.
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l--~p~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL--KPVLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh--hHHHHHHHHHHHHHHhcCchhhHhH
Confidence 44888889999999888643 35799998887777777553 333 22333222221 5799999999
Q ss_pred HHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHH-Hhcc
Q 008746 194 NCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLED-RLQH 272 (555)
Q Consensus 194 ~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~-~L~s 272 (555)
+|..+|.|..-+.++. |....+++...+..+. ...+-|.++. ..++.| +.....+.+.+.. -+.|
T Consensus 490 AAsAAlqE~VGR~~n~-----p~Gi~Lis~~dy~sV~---~rsNcy~~l~--~~ia~~----~~y~~~~f~~L~t~Kv~H 555 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNF-----PHGISLISTIDYFSVT---NRSNCYLDLC--VSIAEF----SGYREPVFNHLLTKKVCH 555 (1133)
T ss_pred HHHHHHHHHhccCCCC-----CCchhhhhhcchhhhh---hhhhHHHHHh--HHHHhh----hhHHHHHHHHHHhccccc
Confidence 9999999986543321 0011111100000000 0112233321 112221 1223334444433 3667
Q ss_pred CchHHHHHHHHHHHHhcCCcch-hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Q 008746 273 ANGAVVLSTIKVFLHLTLSMTD-VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (555)
Q Consensus 273 ~~~aV~~eai~~i~~l~~~~~~-~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~ 332 (555)
=+..+...|+.++..+....+. .....+ . +++.-..+++.+.|.........++..
T Consensus 556 Wd~~irelaa~aL~~Ls~~~pk~~a~~~L---~-~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 556 WDVKIRELAAYALHKLSLTEPKYLADYVL---P-PLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHhhcccch---h-hhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 7888888888888776544332 111122 2 222223357889988877766666543
No 171
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=81.90 E-value=2.6 Score=28.32 Aligned_cols=28 Identities=25% Similarity=0.124 Sum_probs=24.0
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHHHh
Q 008746 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLY 163 (555)
Q Consensus 136 l~~~i~~~l~d~~~~VRk~A~lal~kl~ 163 (555)
.+|.+.+++.+.++.||+.|+.|+..+.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5677888999999999999999988764
No 172
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=80.83 E-value=56 Score=31.58 Aligned_cols=163 Identities=20% Similarity=0.196 Sum_probs=92.8
Q ss_pred CCCChHHHHHHHHHhcCCChh--hhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHH------
Q 008746 110 KDEDPMIRGLALRSLCSLRVA--NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKH------ 181 (555)
Q Consensus 110 ~~~n~~vr~lAL~~L~~i~~~--ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~------ 181 (555)
+.+++......+++|+.++.. ...+.+...+..+...++..++--+..-+.++++.++..+ +.+.+.+..
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--~~L~~~L~~~~~r~~ 88 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--PFLQPLLLLLILRIP 88 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH--HHHHHHHHHHHhhcc
Confidence 456677777777777666443 4455566666666666666666677777777777766544 222222222
Q ss_pred --HHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHH
Q 008746 182 --LMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (555)
Q Consensus 182 --lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~ 259 (555)
....+....+..+....+..++...|.... + ++. .+..+++ ...++-.+...++.++.+++.+--+.
T Consensus 89 ~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~----~---ll~--~ls~~L~--~~~~~~~~alale~l~~Lc~~~vvd~ 157 (234)
T PF12530_consen 89 SSFSSKDEFWECLISIAASIRDICCSRPDHGV----D---LLP--LLSGCLN--QSCDEVAQALALEALAPLCEAEVVDF 157 (234)
T ss_pred cccCCCcchHHHHHHHHHHHHHHHHhChhhHH----H---HHH--HHHHHHh--ccccHHHHHHHHHHHHHHHHHhhccH
Confidence 001233445555555677788877764211 1 111 2333333 67788899999999999985544444
Q ss_pred HHHHHHHHHHhccC-chHHHHHHHHHH
Q 008746 260 FDIMNLLEDRLQHA-NGAVVLSTIKVF 285 (555)
Q Consensus 260 ~~i~~~l~~~L~s~-~~aV~~eai~~i 285 (555)
...-..+.+.+... .|.|..+-.+.+
T Consensus 158 ~s~w~vl~~~l~~~~rp~v~~~l~~l~ 184 (234)
T PF12530_consen 158 YSAWKVLQKKLSLDYRPLVLKSLCSLF 184 (234)
T ss_pred HHHHHHHHHhcCCccchHHHHHHHHHH
Confidence 45555666666433 344544444443
No 173
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=80.81 E-value=31 Score=36.61 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=90.2
Q ss_pred CCCChHHHHHHHHHHHHHhhhC-------------CCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccch
Q 008746 145 KDNNSYVRTVAVIGVLKLYHIS-------------APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (555)
Q Consensus 145 ~d~~~~VRk~A~lal~kl~~~~-------------p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~ 211 (555)
.|...-||..|..|+....+.- |+. +..-.+.+..+-++|+++.+++.|+.++..+..-.
T Consensus 6 r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~--~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs----- 78 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDT--PELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS----- 78 (728)
T ss_pred hhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCC--CCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh-----
Confidence 3445667777777776654322 332 12223444444469999999999999888875421
Q ss_pred HhhhHHhhhccHHHHHHHHhh-cCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHH-hccCchHHHHHHHHHHHHhc
Q 008746 212 EASREREALISKPVIYYLLNR-IKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDR-LQHANGAVVLSTIKVFLHLT 289 (555)
Q Consensus 212 ~~~~~~~~ll~~~~~~~L~~~-l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~-L~s~~~aV~~eai~~i~~l~ 289 (555)
|+.+..-+.. =..+.||.....-.++..| ..+... ....++-++-++++++-.+-
T Consensus 79 -----------k~fls~a~~~~~~~ftpf~v~~a~si~~~~------------r~l~~~l~~e~~~~~~tq~~kcla~lv 135 (728)
T KOG4535|consen 79 -----------KQFLSVAEDTSDHAFTPFSVMIACSIRELH------------RCLLLALVAESSSQTVTQIIKCLANLV 135 (728)
T ss_pred -----------HHHHHHHhccCCcCCCchHHHHHHHHHHHH------------HHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 1122222211 1135677665544444332 133322 23445557788888876553
Q ss_pred CCcc--hhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Q 008746 290 LSMT--DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (555)
Q Consensus 290 ~~~~--~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~ 332 (555)
...+ .++..++.+..+-+-.++.++|+|++..+|-.+..++..
T Consensus 136 ~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t 180 (728)
T KOG4535|consen 136 SNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVST 180 (728)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhc
Confidence 3222 233334444444455667789999999999988887754
No 174
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.53 E-value=5.1 Score=39.89 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=61.7
Q ss_pred HhhhhcCCCCchhHHHHHHHHHHhcCCCC-----hHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHh
Q 008746 67 EMVMCSATSDIVLKKMCYLYVGNYAKVNP-----DLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLG 141 (555)
Q Consensus 67 ~vi~~~~s~~~~~Krl~yl~l~~~~~~~~-----e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~ 141 (555)
.|++-+.+..-.+=|.+.+.+..++..-. ++-.+++--+.|. ..+|-++|.-|-++|-.+..+--...+.+.+.
T Consensus 133 ~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka-~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~ 211 (334)
T KOG2933|consen 133 AVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKA-SQDNRFVREDAEKALVAMVNHVTPQKLLRKLI 211 (334)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccchHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 34455556666677888887776654322 2233444333333 44578888887777776665555556777778
Q ss_pred hccCCCChHHHHHHHHHHHHH
Q 008746 142 LGLKDNNSYVRTVAVIGVLKL 162 (555)
Q Consensus 142 ~~l~d~~~~VRk~A~lal~kl 162 (555)
.++.|.+|.||.+|++|..+.
T Consensus 212 ~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 212 PILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHHhhhchhhhhhhhcccccc
Confidence 888888899998888875443
No 175
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=79.98 E-value=26 Score=32.57 Aligned_cols=121 Identities=19% Similarity=0.115 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHhHc-CCCChHHH-HHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHH
Q 008746 79 LKKMCYLYVGNYAKVNPDLALLTINFLQRDC-KDEDPMIR-GLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAV 156 (555)
Q Consensus 79 ~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL-~~~n~~vr-~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~ 156 (555)
.+-++|+++.......++. .....+..-+ .-+|..+. .+|-+.++.....+- .. +.+.+...++++++|+.|.
T Consensus 52 ~~~~~~lal~~~~~~~~~~--~~~~~~~~~i~~~~~W~~~D~~~~~~~~~~~~~~~--~~-~~~~~w~~s~~~~~rR~~~ 126 (197)
T cd06561 52 IREAQYLALDLLDKKELKE--EDLERFEPWIEYIDNWDLVDSLCANLLGKLLYAEP--EL-DLLEEWAKSENEWVRRAAI 126 (197)
T ss_pred HHHHHHHHHHHHHHhcCCH--HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCc--ch-HHHHHHHhCCcHHHHHHHH
Confidence 4666666666665321221 1222333322 23445444 345555554322111 01 5667888999999999999
Q ss_pred HHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc
Q 008746 157 IGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (555)
Q Consensus 157 lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~ 208 (555)
.++.+.+....+ . ..+.+.+..+ ..|.+..|..+.--+|.+++..+|+
T Consensus 127 ~~~~~~~~~~~~-~--~~~l~~~~~~-~~d~~~~Vqkav~w~L~~~~~~~~~ 174 (197)
T cd06561 127 VLLLRLIKKETD-F--DLLLEIIERL-LHDEEYFVQKAVGWALREYGKKDPE 174 (197)
T ss_pred HHHHHHHHhccc-H--HHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 999998876222 2 4566777776 6889999999999999999887663
No 176
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=79.96 E-value=2.5 Score=40.07 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=55.7
Q ss_pred HHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc
Q 008746 103 NFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (555)
Q Consensus 103 n~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~ 170 (555)
..+.+=+.|+|+.+|-.|+-++......+-.+.+...+...+.|++.||||...-++..+++.+|+.+
T Consensus 123 ~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v 190 (213)
T PF08713_consen 123 ELLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEV 190 (213)
T ss_dssp HHHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHH
Confidence 45555668999999999998887776666677888888899999999999999999999999888765
No 177
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=79.92 E-value=16 Score=32.55 Aligned_cols=81 Identities=16% Similarity=0.053 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC----Ch---hhhH-HHHHHHHhhccCC-CChHHHH
Q 008746 83 CYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL----RV---ANLV-EYLVGPLGLGLKD-NNSYVRT 153 (555)
Q Consensus 83 ~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~---~ei~-~~l~~~i~~~l~d-~~~~VRk 153 (555)
+.+-+.-....+++..--++.+|+|-++++||.+.-.||..|-.+ |. .+++ ..++..+.+++.+ .++.||.
T Consensus 20 ~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~ 99 (144)
T cd03568 20 LILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKE 99 (144)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHH
Confidence 334444555555666678889999999999999999999887664 22 2332 4566667777777 7889999
Q ss_pred HHHHHHHHHh
Q 008746 154 VAVIGVLKLY 163 (555)
Q Consensus 154 ~A~lal~kl~ 163 (555)
+++..+..-.
T Consensus 100 kil~li~~W~ 109 (144)
T cd03568 100 KLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHH
Confidence 9877665543
No 178
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=79.65 E-value=36 Score=31.62 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=60.1
Q ss_pred hhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc
Q 008746 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (555)
Q Consensus 131 ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~ 208 (555)
.+++...+.|.++..++++.||..|+..+.-+.+.. .+.-...++.+..+ ..|+|+.++..|...+.++.++.++
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG--LvnP~~cvp~lIAL-~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQG--LVNPKQCVPTLIAL-ETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC--CCChHHHHhHhhhh-hCCCChHHHHHHHHHHHHHHHHhHH
Confidence 467778888899999999999999999888877632 22112457888887 7999999999999999999887664
No 179
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=79.54 E-value=64 Score=34.21 Aligned_cols=161 Identities=12% Similarity=0.091 Sum_probs=94.9
Q ss_pred ChHHHHHHHHHhcCC---Chhhh----HHHHHHHHhhccCC-CChHHHHHHHHHHHHHhhhCCCcccCCC--chHHHHHH
Q 008746 113 DPMIRGLALRSLCSL---RVANL----VEYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISAPTCIDAD--FPPTLKHL 182 (555)
Q Consensus 113 n~~vr~lAL~~L~~i---~~~ei----~~~l~~~i~~~l~d-~~~~VRk~A~lal~kl~~~~p~~~~~~~--~~~~l~~l 182 (555)
...-+-.|+.-|-.+ ++..+ ...+...+.+.+.| .++..|+-|..-+.++.+..|..+.+.. .+.++...
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 555566666543332 22222 22344556677888 6788888899999999998888763311 22233333
Q ss_pred HhcCCChHHHHHHHHHHHHH-HhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccC-CCChhHHH
Q 008746 183 MLNDPDPQVVANCLSALQEI-WSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV-PLDSNEIF 260 (555)
Q Consensus 183 ll~d~d~~V~~~a~~~L~~i-~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~-~~~~~~~~ 260 (555)
-+|+++.|+..|......+ ..+.|. . .+..++..+...++---+.+++++++.. .-+.++..
T Consensus 380 -a~ds~~~v~~~Aeed~~~~las~~P~----~-----------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~ 443 (516)
T KOG2956|consen 380 -AKDSQDEVMRVAEEDCLTTLASHLPL----Q-----------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELL 443 (516)
T ss_pred -HhCCchhHHHHHHHHHHHHHHhhCch----h-----------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHH
Confidence 4788888888776654443 334332 1 2223333333355555566777777764 33445555
Q ss_pred HHHHHH----HHHhccCchHHHHHHHHHHHHhc
Q 008746 261 DIMNLL----EDRLQHANGAVVLSTIKVFLHLT 289 (555)
Q Consensus 261 ~i~~~l----~~~L~s~~~aV~~eai~~i~~l~ 289 (555)
.+++-+ ..-..|.+++|+-+|+=|+..+.
T Consensus 444 ~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 444 NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 444444 44456788889999988887653
No 180
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=79.14 E-value=20 Score=31.72 Aligned_cols=78 Identities=14% Similarity=0.076 Sum_probs=51.0
Q ss_pred HHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC----Ch---hhhH-HHHHHHHhhccC-CCChHHHHHHH
Q 008746 86 YVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL----RV---ANLV-EYLVGPLGLGLK-DNNSYVRTVAV 156 (555)
Q Consensus 86 ~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~---~ei~-~~l~~~i~~~l~-d~~~~VRk~A~ 156 (555)
.+.-....+++..--++.+|+|.++++||.+.-.||..|-.+ +. .+++ ..+...+.+++. ..++.||++++
T Consensus 27 eicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil 106 (142)
T cd03569 27 EICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKIL 106 (142)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHH
Confidence 333333444455567889999999999999999999777553 22 1222 234445555554 57889999887
Q ss_pred HHHHHHh
Q 008746 157 IGVLKLY 163 (555)
Q Consensus 157 lal~kl~ 163 (555)
..+..-.
T Consensus 107 ~li~~W~ 113 (142)
T cd03569 107 ELIQAWA 113 (142)
T ss_pred HHHHHHH
Confidence 7655544
No 181
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=79.07 E-value=2.1 Score=29.21 Aligned_cols=24 Identities=25% Similarity=0.115 Sum_probs=18.4
Q ss_pred HHHHHHhhccCCCChHHHHHHHHH
Q 008746 135 YLVGPLGLGLKDNNSYVRTVAVIG 158 (555)
Q Consensus 135 ~l~~~i~~~l~d~~~~VRk~A~la 158 (555)
.+...+.+.+.|++|.||++|+-.
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 566777788888888888887653
No 182
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=78.98 E-value=49 Score=33.88 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHhHc-CCCChHHHHHHHHHhcCCC---hhhhHHHHHHHHhhccCCCChHHHHHHH
Q 008746 81 KMCYLYVGNYAKVNPDLALLTINFLQRDC-KDEDPMIRGLALRSLCSLR---VANLVEYLVGPLGLGLKDNNSYVRTVAV 156 (555)
Q Consensus 81 rl~yl~l~~~~~~~~e~~~l~in~l~kDL-~~~n~~vr~lAL~~L~~i~---~~ei~~~l~~~i~~~l~d~~~~VRk~A~ 156 (555)
-+.|-.+..+.. . +++--+++.+..-+ +..|+...+.++.+++.-. +.++.+.++..+++.+.|+.+.|||.-+
T Consensus 5 ~~~~~~L~~l~~-~-~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~ 82 (339)
T PF12074_consen 5 VLHASMLSSLPS-S-SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWL 82 (339)
T ss_pred HHHHHHHHhCCC-c-chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHH
Confidence 333444444433 2 24444555555544 3478888888888887632 3567788899999999999999999999
Q ss_pred HHHHHHhh
Q 008746 157 IGVLKLYH 164 (555)
Q Consensus 157 lal~kl~~ 164 (555)
.+++..+.
T Consensus 83 ~~~~~~~~ 90 (339)
T PF12074_consen 83 LCLGEALW 90 (339)
T ss_pred HHHHHHHh
Confidence 99999886
No 183
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.46 E-value=1.3e+02 Score=34.34 Aligned_cols=130 Identities=18% Similarity=0.128 Sum_probs=77.6
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhccccchHh
Q 008746 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDP-DPQVVANCLSALQEIWSLEASTSEEA 213 (555)
Q Consensus 135 ~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~-d~~V~~~a~~~L~~i~~~~~~~~~~~ 213 (555)
.+...+.+.+ +++|.|||.|=-++-..-. .+++.-.+..++-++. |+..+.+|...+-.-.+++..+..+.
T Consensus 6 ~l~~~l~qTl-~pdps~rk~aEr~L~~~e~-------q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~ 77 (960)
T KOG1992|consen 6 TLANYLLQTL-SPDPSVRKPAERALRSLEG-------QQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDS 77 (960)
T ss_pred HHHHHHHhcC-CCCCccCchHHHHHHHhcc-------CCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCC
Confidence 3444444433 4678999998887765532 2556666777755554 88899988888888777665432221
Q ss_pred hhHHhhhcc--HHHHHHHH-hhcCCCChhHHHHHHHHHHccCCCC-hhHHHHHHHHHHHHhccCch
Q 008746 214 SREREALIS--KPVIYYLL-NRIKEFSEWAQCLVLELVAKYVPLD-SNEIFDIMNLLEDRLQHANG 275 (555)
Q Consensus 214 ~~~~~~ll~--~~~~~~L~-~~l~~~~pw~q~~iL~~L~~~~~~~-~~~~~~i~~~l~~~L~s~~~ 275 (555)
+ ..+.+ +..+..++ ...-...+-.|+.+=+.+...+..| |+.+..+++-+...+++.+-
T Consensus 78 -~--~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~ 140 (960)
T KOG1992|consen 78 -P--IKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDF 140 (960)
T ss_pred -c--cccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccch
Confidence 0 00011 11222222 2222334567888888887776544 45567788888888886653
No 184
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=78.25 E-value=13 Score=33.89 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhC-CCcccC--CCchHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 008746 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-APTCID--ADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 130 ~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~-p~~~~~--~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~ 204 (555)
......+...+-+++++++++-|-.++.-+......+ ++.+.. ..|...+...+.+...+.+...++.++..+..
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3455667777888999999999987777777777776 554411 46888888886555667778888888887754
No 185
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=78.00 E-value=19 Score=31.42 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC----Ch---hhhH-HHHHHHHhhccCCC--C
Q 008746 79 LKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL----RV---ANLV-EYLVGPLGLGLKDN--N 148 (555)
Q Consensus 79 ~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~---~ei~-~~l~~~i~~~l~d~--~ 148 (555)
.---+.+.+.-....+++..--++..|+|-++++||.+.-.||..|-.+ +. .+++ ..++..+.+++.++ .
T Consensus 16 ~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~ 95 (133)
T smart00288 16 EDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPL 95 (133)
T ss_pred cCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCc
Confidence 3334445666666667777888999999999999999999999988665 22 2232 23555666666654 3
Q ss_pred hHHHHHHHHHHHHHhh
Q 008746 149 SYVRTVAVIGVLKLYH 164 (555)
Q Consensus 149 ~~VRk~A~lal~kl~~ 164 (555)
+.||++++..+..-..
T Consensus 96 ~~Vk~kil~li~~W~~ 111 (133)
T smart00288 96 PLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4489888776665543
No 186
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=77.38 E-value=27 Score=36.57 Aligned_cols=154 Identities=16% Similarity=0.088 Sum_probs=98.7
Q ss_pred HHHHHHhcCCCc-------chhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHc---------CCCC
Q 008746 50 KVISYMTIGIDV-------SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDC---------KDED 113 (555)
Q Consensus 50 kli~~~~~G~d~-------s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL---------~~~n 113 (555)
.++.+...|.|- +.+|-.+..++.|+|...--+|-+++..+.+.+..-.-++-|.+.+-| -+.|
T Consensus 295 el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgn 374 (604)
T KOG4500|consen 295 ELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGN 374 (604)
T ss_pred hHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 345566677432 224445567999999999999999999999887654446655555433 3467
Q ss_pred hHHHHHHHHHhcCCChhh-----hHH-HHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCC-----cccCCCchHHHHHH
Q 008746 114 PMIRGLALRSLCSLRVAN-----LVE-YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP-----TCIDADFPPTLKHL 182 (555)
Q Consensus 114 ~~vr~lAL~~L~~i~~~e-----i~~-~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~-----~~~~~~~~~~l~~l 182 (555)
-.++..++.+|-++..|- +++ .+...|..-+.-..|.|..+-..+ +++.+..-+ +...++.++.|..+
T Consensus 375 V~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgT-lrM~~d~qe~~a~eL~kn~~l~ekLv~W 453 (604)
T KOG4500|consen 375 VERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGT-LRMIRDSQEYIACELAKNPELFEKLVDW 453 (604)
T ss_pred chhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHH-HHHHHhchHHHHHHHhcCHHHHHHHHHh
Confidence 777788888888876653 222 234445555665666666554443 344332222 11235667788887
Q ss_pred HhcCCCh-HHHHHHHHHHHHHHhh
Q 008746 183 MLNDPDP-QVVANCLSALQEIWSL 205 (555)
Q Consensus 183 ll~d~d~-~V~~~a~~~L~~i~~~ 205 (555)
-..+|. ||.+....++..+.++
T Consensus 454 -sks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 454 -SKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred -hhCCccchhhhhhhHHHHHHHHh
Confidence 566775 4888888888887765
No 187
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.13 E-value=73 Score=36.01 Aligned_cols=128 Identities=20% Similarity=0.306 Sum_probs=86.7
Q ss_pred CCchhHHHHHHHHHHHHhhC--Ccc-----------------c---ccccceeee-ccCCcHHHHHHHHHHHHHcc--CC
Q 008746 314 GSPEQSYAVLSHLHILVMRA--PFI-----------------F---ASDYKHFYC-QYNEPSYVKKLKLEMLTAVA--NE 368 (555)
Q Consensus 314 ~~~~~ry~aL~~l~~l~~~~--p~~-----------------~---~~~~~~f~~-~~~dd~~Ir~~aL~iL~~l~--~~ 368 (555)
.|+++=-.+|+.+..++.+. |++ | +.++..+.+ ...+|.+||+.+++++.++. .+
T Consensus 75 ~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~ 154 (970)
T KOG0946|consen 75 MDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP 154 (970)
T ss_pred CCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC
Confidence 56776667788887776654 111 1 112222222 35678999999999999973 33
Q ss_pred CCHHHH-------HHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcHH------HHHHHHHHHhhcc----cchhHHHHHH
Q 008746 369 SNTYEI-------VTELCEYAANVDIPIARESIRAVGKIALQQYDVN------AIVDRLLQFLEME----KDYVTAEALV 431 (555)
Q Consensus 369 ~N~~~I-------v~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~~------~~i~~ll~ll~~~----~~~v~~e~i~ 431 (555)
.-+.+. +..|...++++-.-+|.++|-.+..+....+... ..++.++.+++.. |..|+++|+.
T Consensus 155 ~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ 234 (970)
T KOG0946|consen 155 TELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLI 234 (970)
T ss_pred HHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 334443 4455667777777788899999988886655432 3678899999874 3579999999
Q ss_pred HHHHHHHhCC
Q 008746 432 LVKDLLRKYP 441 (555)
Q Consensus 432 ~i~~ii~~~~ 441 (555)
.+.+++..+.
T Consensus 235 ll~NLLK~N~ 244 (970)
T KOG0946|consen 235 LLNNLLKNNI 244 (970)
T ss_pred HHHHHHhhCc
Confidence 9988887644
No 188
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=76.12 E-value=3.3 Score=25.69 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCCChhhhHHHHH
Q 008746 114 PMIRGLALRSLCSLRVANLVEYLV 137 (555)
Q Consensus 114 ~~vr~lAL~~L~~i~~~ei~~~l~ 137 (555)
+.+|..|..+||++++++-.+.+.
T Consensus 1 ~~vR~~aa~aLg~~~~~~a~~~L~ 24 (30)
T smart00567 1 PLVRHEAAFALGQLGDEEAVPALI 24 (30)
T ss_pred CHHHHHHHHHHHHcCCHhHHHHHH
Confidence 368999999999999988665544
No 189
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=75.87 E-value=99 Score=31.71 Aligned_cols=79 Identities=13% Similarity=0.226 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCc---------HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh
Q 008746 369 SNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD---------VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRK 439 (555)
Q Consensus 369 ~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~---------~~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~ 439 (555)
.|.+.....+...+.+.+.-.++.+++.+|.+-..-++ ....+..++.+|+.....+.-|+..+++ +...
T Consensus 205 ~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFK-vFVA 283 (335)
T PF08569_consen 205 NNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFK-VFVA 283 (335)
T ss_dssp HTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHH-HHHh
Confidence 45666666555566666777778888888877643222 2236788899998887888889888877 5556
Q ss_pred CCCCcchHH
Q 008746 440 YPQWSHDCI 448 (555)
Q Consensus 440 ~~~~~~~~~ 448 (555)
+|+..+.+.
T Consensus 284 Np~K~~~I~ 292 (335)
T PF08569_consen 284 NPNKPPPIV 292 (335)
T ss_dssp -SS-BHHHH
T ss_pred CCCCChHHH
Confidence 688765543
No 190
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=75.69 E-value=21 Score=40.70 Aligned_cols=206 Identities=17% Similarity=0.146 Sum_probs=109.4
Q ss_pred HhHc-CCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHH-HhhhCCCcccCCCchHHHHHHH
Q 008746 106 QRDC-KDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLK-LYHISAPTCIDADFPPTLKHLM 183 (555)
Q Consensus 106 ~kDL-~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~k-l~~~~p~~~~~~~~~~~l~~ll 183 (555)
-|.| .-.+|..-+.|.+.+..+.+|++-........=.+.| ++.++|.+-.|-.+ +|+. .+. .+..+.+.+.
T Consensus 802 ~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D-~~~~~~r~~~a~~riLykQ---RfF-~~ivP~l~~~- 875 (1030)
T KOG1967|consen 802 TKALLLRNHPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSD-SNPLLKRKGHAEPRILYKQ---RFF-CDIVPILVSK- 875 (1030)
T ss_pred HHHHHHcCCcccchHHHHHHHhcCCccccchHHHhhHhhhcc-ChHHhhhccccchhHHHHH---HHH-HhhHHHHHHH-
Confidence 3444 3346788889999999999988766555444333444 44555555555553 3331 110 3455666665
Q ss_pred hcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHH
Q 008746 184 LNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIM 263 (555)
Q Consensus 184 l~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~ 263 (555)
..-.+.++...-+.+|.....+-|. + + ..| +..++.
T Consensus 876 ~~t~~~~~K~~yl~~LshVl~~vP~---------------~-----------------v--------llp----~~~~Ll 911 (1030)
T KOG1967|consen 876 FETAPGSQKHNYLEALSHVLTNVPK---------------Q-----------------V--------LLP----QFPMLL 911 (1030)
T ss_pred hccCCccchhHHHHHHHHHHhcCCH---------------H-----------------h--------hcc----chhhHH
Confidence 2334555566666666555443221 0 0 011 112244
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHHhhCCc-c---
Q 008746 264 NLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSP---EQSYAVLSHLHILVMRAPF-I--- 336 (555)
Q Consensus 264 ~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~---~~ry~aL~~l~~l~~~~p~-~--- 336 (555)
+.+..-|.-.+..|..++.+++-.+-...+.+...-++.+++.+..+-.+.+. -+|..||+.+..+...-|. .
T Consensus 912 PLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~ 991 (1030)
T KOG1967|consen 912 PLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLS 991 (1030)
T ss_pred HHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccc
Confidence 45555555666666666666654322222222222234455555554334443 2799999999999886664 2
Q ss_pred ccccc-cee-eeccCCcHHHHHHHHHH
Q 008746 337 FASDY-KHF-YCQYNEPSYVKKLKLEM 361 (555)
Q Consensus 337 ~~~~~-~~f-~~~~~dd~~Ir~~aL~i 361 (555)
|++.+ +.+ -|+.|.-.-||..|.+.
T Consensus 992 fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 992 FRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred ccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 33322 112 24445447778887774
No 191
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=75.18 E-value=7.2 Score=44.23 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=61.2
Q ss_pred CCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHc----CCCC---hHHHHHHHHHhcCCCh--
Q 008746 59 IDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDC----KDED---PMIRGLALRSLCSLRV-- 129 (555)
Q Consensus 59 ~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL----~~~n---~~vr~lAL~~L~~i~~-- 129 (555)
-++..++|-+++.++-+|..+|-=.--.+..+..+.+.+...=..|+..-+ .|+| -.+|-.||++|..+..
T Consensus 905 p~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~ 984 (1030)
T KOG1967|consen 905 PQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRL 984 (1030)
T ss_pred cchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccC
Confidence 355556666677777777766554444444444444443333333333322 2222 5678888888887633
Q ss_pred -----hhhHHHHHHHHhhccCCCChHHHHHHHHHHHH
Q 008746 130 -----ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLK 161 (555)
Q Consensus 130 -----~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~k 161 (555)
-..-+.++..+.+.|.|+.-.|||.|+.|=..
T Consensus 985 P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 985 PTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred CCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 12345677777788888888888888776443
No 192
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=74.91 E-value=69 Score=29.44 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=37.1
Q ss_pred cCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHh
Q 008746 366 ANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFL 418 (555)
Q Consensus 366 ~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~~~~i~~ll~ll 418 (555)
.+++|++.++.+|.....+ +++.+..+++.+...+...|....+.-.++..+
T Consensus 11 Ls~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l 62 (200)
T smart00543 11 LSPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPNFIPAYARLCALL 62 (200)
T ss_pred CCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 3478999999999877644 468889999999888887776433333333333
No 193
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=74.86 E-value=6.3 Score=40.82 Aligned_cols=72 Identities=17% Similarity=0.291 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhccCc-hHHHHHHHHHHHHhcCCcchhHHHHHHH--HHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Q 008746 260 FDIMNLLEDRLQHAN-GAVVLSTIKVFLHLTLSMTDVHQQVYER--IKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (555)
Q Consensus 260 ~~i~~~l~~~L~s~~-~aV~~eai~~i~~l~~~~~~~~~~~l~~--i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~ 332 (555)
..++..|..+|+.++ |.++.-|+.-|.++--..|..+ .++.+ ....+..+++++||++||-||.++..++..
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk-~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGK-AVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHh-HHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 457777888887655 7777777777765543333221 12221 233467889999999999999999987644
No 194
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=73.38 E-value=60 Score=36.70 Aligned_cols=145 Identities=15% Similarity=0.153 Sum_probs=91.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchHHHHHhh
Q 008746 374 IVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGS 453 (555)
Q Consensus 374 Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~ 453 (555)
.+.+|..++.+.|.....++-..+.+.-.. ....|.+..|++.....++.-.-+++..+ +.|... .....+.
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~y~~~t~s~~~~~il~~~-----~~P~~K-~~~~~l~- 76 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNS-DREPWLVNGLVDYYLSTNSQRALEILVGV-----QEPHDK-HLFDKLN- 76 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhc-cchHHHHHHHHHHHhhcCcHHHHHHHHhc-----CCccHH-HHHHHHH-
Confidence 356677788888877777776666443321 12359999999987665544443433322 334321 2222233
Q ss_pred hcccCCCchHHHHHHHHHHhccccCCCC------hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Q 008746 454 ISSQNVQEPKAKAALIWMLGEYSQDMQD------APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAA 527 (555)
Q Consensus 454 l~~~~~~~~~~~~~~~wiiGEy~~~~~~------~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~v 527 (555)
+.+..+..|..++-++|.+...-+. -..++..++++...+.+..+=..+|++++-+....|....+.|..+
T Consensus 77 ---~~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~L 153 (668)
T PF04388_consen 77 ---DYFVKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDL 153 (668)
T ss_pred ---HHHcCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 3345677788888899988776542 2256777888877777688888888899899888886555555544
Q ss_pred HH
Q 008746 528 LA 529 (555)
Q Consensus 528 l~ 529 (555)
|.
T Consensus 154 f~ 155 (668)
T PF04388_consen 154 FN 155 (668)
T ss_pred HH
Confidence 44
No 195
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=73.21 E-value=11 Score=32.47 Aligned_cols=41 Identities=15% Similarity=0.035 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc
Q 008746 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT 169 (555)
Q Consensus 129 ~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~ 169 (555)
++.-+..++..+.+-|+|++|+|+.||+-.+-.+....++.
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~ 72 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD 72 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH
Confidence 44455566677777788888888888888888777766544
No 196
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=71.93 E-value=9.6 Score=35.49 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=55.1
Q ss_pred HHHHhHcCCCChHHHHHHHHHhcCCChh-hhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc
Q 008746 103 NFLQRDCKDEDPMIRGLALRSLCSLRVA-NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (555)
Q Consensus 103 n~l~kDL~~~n~~vr~lAL~~L~~i~~~-ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~ 170 (555)
..+.+=..|+|+.+|-.|+-++...... .-.+.+...+..++.|++.||||..+-++..+++.+|+.+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v 176 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERV 176 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 4555666889999999988887775433 4566778888899999999999999999999999888765
No 197
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=71.91 E-value=21 Score=33.08 Aligned_cols=72 Identities=24% Similarity=0.259 Sum_probs=46.1
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHHHHhhh-CCCccc--CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 008746 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 135 ~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~-~p~~~~--~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~ 207 (555)
.+.|.....+......-|--|..++..+... .++.+. -++++..+++. ++.+|+.|..+++.+|..+....+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~A-L~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRA-LNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHhhh
Confidence 3445555555544333345555566666555 443321 26778888888 689999999999999998865444
No 198
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=71.67 E-value=5.9 Score=24.04 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCChhhhHHHHHHHH
Q 008746 116 IRGLALRSLCSLRVANLVEYLVGPL 140 (555)
Q Consensus 116 vr~lAL~~L~~i~~~ei~~~l~~~i 140 (555)
||..|..+||.+++++-++.+...+
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6889999999999988776665443
No 199
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=71.36 E-value=40 Score=29.75 Aligned_cols=79 Identities=11% Similarity=-0.003 Sum_probs=53.0
Q ss_pred HHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC----Ch---hhhH-HHHHHHHhhccCC------CChH
Q 008746 85 LYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL----RV---ANLV-EYLVGPLGLGLKD------NNSY 150 (555)
Q Consensus 85 l~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~---~ei~-~~l~~~i~~~l~d------~~~~ 150 (555)
+-+.-....+++..--++-+++|-++++||.+.-.||..|-.+ |. .+++ ..+...+.+++.. .++.
T Consensus 23 leicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~ 102 (139)
T cd03567 23 QAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEK 102 (139)
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHH
Confidence 3444444556666678889999999999999999998776553 22 2333 3455566666643 5789
Q ss_pred HHHHHHHHHHHHh
Q 008746 151 VRTVAVIGVLKLY 163 (555)
Q Consensus 151 VRk~A~lal~kl~ 163 (555)
||.+.+.-+..-.
T Consensus 103 Vk~kil~li~~W~ 115 (139)
T cd03567 103 VKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHH
Confidence 9998766554443
No 200
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=70.04 E-value=88 Score=30.35 Aligned_cols=143 Identities=18% Similarity=0.222 Sum_probs=82.6
Q ss_pred hccCchHHHHHHHHHHHHhcCC------cchhHHHH---HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCc-cc--
Q 008746 270 LQHANGAVVLSTIKVFLHLTLS------MTDVHQQV---YERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IF-- 337 (555)
Q Consensus 270 L~s~~~aV~~eai~~i~~l~~~------~~~~~~~~---l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~-~~-- 337 (555)
+++.+++|+-.+|.+...+.+. ...-..++ +..+...+..+..+.++.+|..+++-+..++..... .-
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 4566777766666655433221 01111122 234455566678888899999999999977654311 11
Q ss_pred ---ccccceee--eccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHhcccCcH-HH
Q 008746 338 ---ASDYKHFY--CQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVD--IPIARESIRAVGKIALQQYDV-NA 409 (555)
Q Consensus 338 ---~~~~~~f~--~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d--~~~~~~~i~~i~~la~~~~~~-~~ 409 (555)
...-..|- ..+.+=+.++..+|+- -...+++.|+.++.+.. ......++..++.++.+-|.. ..
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~--------Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~ 153 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEA--------EANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSR 153 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHH--------HHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHH--------HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHH
Confidence 00111111 1122225577777762 24468888898887764 677888999999999888874 45
Q ss_pred HHHHHHHHhhc
Q 008746 410 IVDRLLQFLEM 420 (555)
Q Consensus 410 ~i~~ll~ll~~ 420 (555)
++..++.+-.+
T Consensus 154 Il~~ll~~~~~ 164 (239)
T PF11935_consen 154 ILPALLSFNPN 164 (239)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHhcCcc
Confidence 77777776543
No 201
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=69.80 E-value=1.9e+02 Score=32.18 Aligned_cols=120 Identities=14% Similarity=0.185 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchH-----HHHHhhhcccCCCchHHHHHHHHHHhccccCCCC
Q 008746 407 VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDC-----IAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD 481 (555)
Q Consensus 407 ~~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~-----~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~ 481 (555)
.....+-+++++..+...|...+..++++++-.+.+.+... +.++.+++ ...++..|+...|++-.-....++
T Consensus 417 ~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~--~~~~~n~r~~~~~~Lr~l~f~~de 494 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESML--TDPDFNSRANSLWVLRHLMFNCDE 494 (678)
T ss_pred cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHh--cCCCchHHHHHHHHHHHHHhcchH
Confidence 34567888888877666677777788999998888765432 33444443 334677889999999653333322
Q ss_pred --h----HHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhc
Q 008746 482 --A----PYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGL 532 (555)
Q Consensus 482 --~----~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~~~~ 532 (555)
. .++.-..+..|.++++..||.+.+..+=-+-+. .++.+..+++...
T Consensus 495 ~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~----~~~svdfll~~~~ 547 (678)
T KOG1293|consen 495 EEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN----SRKSVDFLLEKFK 547 (678)
T ss_pred HHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC----cHHHHHHHHHhhh
Confidence 1 123334455666776699999999777555442 3455556655543
No 202
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=69.43 E-value=11 Score=33.31 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=37.6
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccc------ee--eeccCCcHHHHHHHHHHHHHcc
Q 008746 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK------HF--YCQYNEPSYVKKLKLEMLTAVA 366 (555)
Q Consensus 307 L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~------~f--~~~~~dd~~Ir~~aL~iL~~l~ 366 (555)
|.+-+.++++++.+.||..+..++.+.+..|..++. .+ .+....+..||.+.|+++..|+
T Consensus 46 l~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 46 LKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 333456689999999999999999886554433221 11 1122455667777777666664
No 203
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=68.54 E-value=1.4e+02 Score=30.25 Aligned_cols=186 Identities=17% Similarity=0.116 Sum_probs=94.2
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHhhhC--CCccc--CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh-ccccchHh
Q 008746 139 PLGLGLKDNNSYVRTVAVIGVLKLYHIS--APTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL-EASTSEEA 213 (555)
Q Consensus 139 ~i~~~l~d~~~~VRk~A~lal~kl~~~~--p~~~~--~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~-~~~~~~~~ 213 (555)
..+..+.+++.-.|..|+-++.+++... |+.+. ...+.+.+.+.+ +-+.+.-..-|+.++.-++-. .++. .
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~l-kkg~~~E~~lA~~~l~Ll~ltlg~g~---~ 122 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSL-KKGKSEEQALAARALALLALTLGAGE---D 122 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHhhhcCCCc---c
Confidence 4445567888999999999999887533 22221 022344455543 333322222232222222111 0000 0
Q ss_pred hhHHhhhccHHHHHHHHhhcCCC--ChhHHHHHH---HHHHccCCCChhHHHHHHHHHHH-----Hhcc----------C
Q 008746 214 SREREALISKPVIYYLLNRIKEF--SEWAQCLVL---ELVAKYVPLDSNEIFDIMNLLED-----RLQH----------A 273 (555)
Q Consensus 214 ~~~~~~ll~~~~~~~L~~~l~~~--~pw~q~~iL---~~L~~~~~~~~~~~~~i~~~l~~-----~L~s----------~ 273 (555)
...... ...+.|.+.+.+. ++-.+..++ .++..++-.++++....++.+.. .++. .
T Consensus 123 ~~ei~~----~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 123 SEEIFE----ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred HHHHHH----HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCC
Confidence 011111 1233333444443 233434444 45555555666666644454442 2222 1
Q ss_pred chHHHHHHHHHHHHhcCCcch--hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhC
Q 008746 274 NGAVVLSTIKVFLHLTLSMTD--VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (555)
Q Consensus 274 ~~aV~~eai~~i~~l~~~~~~--~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~ 333 (555)
+++|+-+|++.-.-+-...+. +. ..+....+.|..+|.+++.++|..|=+.|..+....
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 346777777764333222222 22 334455566788899999999999999998776554
No 204
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=68.03 E-value=22 Score=38.73 Aligned_cols=126 Identities=15% Similarity=0.110 Sum_probs=80.3
Q ss_pred CCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCC--ChHHHHHHHHHh---cCC---ChhhhHHHHHHHH----hh
Q 008746 75 SDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDE--DPMIRGLALRSL---CSL---RVANLVEYLVGPL----GL 142 (555)
Q Consensus 75 ~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~--n~~vr~lAL~~L---~~i---~~~ei~~~l~~~i----~~ 142 (555)
.....|-+.|+-=+..+....+..+ .-+...+.++ |.-.|.++++++ ... ..+.++..+.+.| .+
T Consensus 297 ~~lq~kIL~~L~kS~~Aa~~~~~~~---~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p 373 (501)
T PF13001_consen 297 PRLQEKILSLLSKSVIAATSFPNIL---QIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWP 373 (501)
T ss_pred HHHHHHHHHHHHHhHHHHhCCccHH---HHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcc
Confidence 3344555555554444332222112 2233466666 778889999999 443 2344444444444 44
Q ss_pred ccC--------CCChHHHHHHHHHHHHHhhhCCCcc-cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 008746 143 GLK--------DNNSYVRTVAVIGVLKLYHISAPTC-IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 143 ~l~--------d~~~~VRk~A~lal~kl~~~~p~~~-~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~ 204 (555)
.+. ..+...|..|..|++.+.+..|..+ .+-+++..+-+. +.+.++.|+.+.-.+|..+..
T Consensus 374 ~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~s-L~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 374 LIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDS-LEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred ccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHH-hhCcchHHHHHHHHHHHHHHH
Confidence 452 2367899999999999999999988 344566666666 478899999998888877654
No 205
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=67.58 E-value=1e+02 Score=28.29 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=71.2
Q ss_pred HHHHHHHhhhcCCC-CCChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHH
Q 008746 24 DLKSQLRQLAGSRA-PGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTI 102 (555)
Q Consensus 24 ~~~~~l~~~~~~~~-~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~i 102 (555)
|.|.+|++.....- .+-.+..++.+.+-=+.... . +..++.++..+.-.+.+.-+-+|-.+..-...+|+.++
T Consensus 2 ~~~~~l~~i~~~~pl~~L~~eek~llW~~R~~~~~-~--p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aL--- 75 (171)
T cd00872 2 EEREQLEAIIARDPLSELTEEDKELLWKLRHECRK-K--PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQAL--- 75 (171)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhh-C--cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHH---
Confidence 45666666542221 12234455566565444433 2 44477777777777777767777777776666666554
Q ss_pred HHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCC
Q 008746 103 NFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDN 147 (555)
Q Consensus 103 n~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~ 147 (555)
.-|-... +++.||.-|++.|.++.+.++... ++.+.+++...
T Consensus 76 eLL~~~f--~d~~VR~yAV~~L~~~sd~eL~~y-L~QLVQaLKyE 117 (171)
T cd00872 76 ELLDCNF--PDEHVREFAVRCLEKLSDDELLQY-LLQLVQVLKYE 117 (171)
T ss_pred HHCCCcC--CCHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHcc
Confidence 3333333 459999999999999988887654 45556666543
No 206
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=67.47 E-value=1.6e+02 Score=30.62 Aligned_cols=136 Identities=20% Similarity=0.196 Sum_probs=82.5
Q ss_pred cCCCCchhHHHHHHHHHHhcCCC---ChH------HHHHHHHHHhHcCC-------CChHHHHHHHHHhcCC-ChhhhH-
Q 008746 72 SATSDIVLKKMCYLYVGNYAKVN---PDL------ALLTINFLQRDCKD-------EDPMIRGLALRSLCSL-RVANLV- 133 (555)
Q Consensus 72 ~~s~~~~~Krl~yl~l~~~~~~~---~e~------~~l~in~l~kDL~~-------~n~~vr~lAL~~L~~i-~~~ei~- 133 (555)
+++.+-..|.=+|+.+...++.. |+. +-+.+..+++|+.+ .+..+...||+++|.+ ..++++
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 35667778888899887765432 222 44667899999987 4677889999999986 334333
Q ss_pred -------HHHHHHHhhccCCCC-hHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHh--cC--CChHHHHHHHHHHHH
Q 008746 134 -------EYLVGPLGLGLKDNN-SYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML--ND--PDPQVVANCLSALQE 201 (555)
Q Consensus 134 -------~~l~~~i~~~l~d~~-~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll--~d--~d~~V~~~a~~~L~~ 201 (555)
..++......+.+++ |=.--++++.+++.-+..|..+ ..+....+...+. .+ +...+...++.++..
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~-~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIM-TSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCccc-chhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 223344444454443 4344455556666656666554 3445555555421 22 445667777777777
Q ss_pred HHhhccc
Q 008746 202 IWSLEAS 208 (555)
Q Consensus 202 i~~~~~~ 208 (555)
+....|.
T Consensus 161 ll~q~p~ 167 (372)
T PF12231_consen 161 LLSQFPQ 167 (372)
T ss_pred HHHHHHH
Confidence 7665553
No 207
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=66.60 E-value=2.3e+02 Score=32.09 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=77.4
Q ss_pred HHHHHHHhHcCCCChHHHHHHHHHhcCC----ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCC--cc--c
Q 008746 100 LTINFLQRDCKDEDPMIRGLALRSLCSL----RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP--TC--I 171 (555)
Q Consensus 100 l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~--~~--~ 171 (555)
.++|.+.-.++++--+.++.|+.+++.+ .++.+.-..+..+.+++.+++-.|+-.|++|+.-+...... .+ .
T Consensus 460 fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sah 539 (970)
T COG5656 460 FIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAH 539 (970)
T ss_pred HHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhh
Confidence 4567777788999999999999999987 33456666778888999999999999999999877543210 00 1
Q ss_pred CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc
Q 008746 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (555)
Q Consensus 172 ~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~ 208 (555)
.|...+.|..+ -++-+..+.+..+..+.+-..++-+
T Consensus 540 Vp~tmekLLsL-Sn~feiD~LS~vMe~fVe~fseELs 575 (970)
T COG5656 540 VPETMEKLLSL-SNTFEIDPLSMVMESFVEYFSEELS 575 (970)
T ss_pred hhHHHHHHHHh-cccccchHHHHHHHHHHHHhHHhhc
Confidence 14444555554 5777777778777777776655443
No 208
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=65.95 E-value=2e+02 Score=31.02 Aligned_cols=52 Identities=17% Similarity=0.015 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCC---ChhhhHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHhhhC
Q 008746 115 MIRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNN-SYVRTVAVIGVLKLYHIS 166 (555)
Q Consensus 115 ~vr~lAL~~L~~i---~~~ei~~~l~~~i~~~l~d~~-~~VRk~A~lal~kl~~~~ 166 (555)
..|..|++.++.. ...+-++.+....+.++.++. +.+|+.|..-+..+.+..
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~ 60 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQ 60 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcc
Confidence 4566777766653 112455667777777777664 468777776666666543
No 209
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.47 E-value=57 Score=38.04 Aligned_cols=120 Identities=16% Similarity=0.153 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCCCcch-------hHHHhhhhcCC-CCchhHHHHHHHHHHhcCCCChH-----HHHHHHHHHhHcC
Q 008746 44 KRELFKKVISYMTIGIDVSA-------VFGEMVMCSAT-SDIVLKKMCYLYVGNYAKVNPDL-----ALLTINFLQRDCK 110 (555)
Q Consensus 44 k~~~l~kli~~~~~G~d~s~-------lf~~vi~~~~s-~~~~~Krl~yl~l~~~~~~~~e~-----~~l~in~l~kDL~ 110 (555)
.+..---++..+..|+..-+ +.......+.+ +..-+|.-+.+-+..+++..++. -.++..-+..-|.
T Consensus 573 qrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls 652 (1387)
T KOG1517|consen 573 QRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS 652 (1387)
T ss_pred HHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc
Confidence 33333345666666654321 23333455655 35678999999999998766653 2244556667788
Q ss_pred CCChHHHHHHHHHhcCCChh------h---------------h-HHHHHH----HHhhccCCCChHHHHHHHHHHHHHh
Q 008746 111 DEDPMIRGLALRSLCSLRVA------N---------------L-VEYLVG----PLGLGLKDNNSYVRTVAVIGVLKLY 163 (555)
Q Consensus 111 ~~n~~vr~lAL~~L~~i~~~------e---------------i-~~~l~~----~i~~~l~d~~~~VRk~A~lal~kl~ 163 (555)
|+-|.||+.|+-+||.+-.. | + +|.++. .+..+++|.+|.||+..+.++.++.
T Consensus 653 D~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 653 DPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred CccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 89999999999888876221 1 1 222222 4445567777777777777666654
No 210
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=65.16 E-value=91 Score=30.11 Aligned_cols=108 Identities=17% Similarity=0.042 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCCh------hhhHHHHHHHHhh---ccC--CCChHHHHHHHHHHHHHhh
Q 008746 96 DLALLTINFLQRDCKDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGL---GLK--DNNSYVRTVAVIGVLKLYH 164 (555)
Q Consensus 96 e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~------~ei~~~l~~~i~~---~l~--d~~~~VRk~A~lal~kl~~ 164 (555)
...-+++.++..-...+....+..+++.++.+-. +.+-+.+.....+ ... +....+.-..+.++.-+..
T Consensus 34 ~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~ 113 (234)
T PF12530_consen 34 VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICC 113 (234)
T ss_pred cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHH
Confidence 4445666666666666666667777777776622 2222222221222 112 2233444455667777888
Q ss_pred hCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 165 ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 165 ~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
..|+.- .+++..+..++..+.++.+.+.++.++..+++.
T Consensus 114 ~~p~~g--~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 114 SRPDHG--VDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred hChhhH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 888844 788889988832677888899999999988854
No 211
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=65.09 E-value=24 Score=36.74 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=68.4
Q ss_pred HHHHHHH-HHhhhCCCcccCCCchHHHHHHHh-----cCCChHHHHHHHHHHHHHHhhccccch-----HhhhHHhhhcc
Q 008746 154 VAVIGVL-KLYHISAPTCIDADFPPTLKHLML-----NDPDPQVVANCLSALQEIWSLEASTSE-----EASREREALIS 222 (555)
Q Consensus 154 ~A~lal~-kl~~~~p~~~~~~~~~~~l~~lll-----~d~d~~V~~~a~~~L~~i~~~~~~~~~-----~~~~~~~~ll~ 222 (555)
.||.-+. .+.+..++.+. +-+...+...+. ...|+.-.-+|+.++..++....+... ..-.+...++.
T Consensus 229 ~AA~dfl~~L~~~~~~~v~-~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~ 307 (370)
T PF08506_consen 229 RAACDFLRSLCKKFEKQVT-SILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFS 307 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHH
Confidence 3555544 45554444330 122344444432 235677778899888888765422100 00001222332
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHccCCC-ChhHHHHHHHHHHHHhccCchHHHHHHHHH
Q 008746 223 KPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-DSNEIFDIMNLLEDRLQHANGAVVLSTIKV 284 (555)
Q Consensus 223 ~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~-~~~~~~~i~~~l~~~L~s~~~aV~~eai~~ 284 (555)
..++..|- .-....||++..+++++..+... +++....+++.+...|++.+..|.--|+.+
T Consensus 308 ~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 308 QHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 22233332 12246899999999999888533 345667788888899998888776555544
No 212
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=63.88 E-value=25 Score=36.15 Aligned_cols=82 Identities=13% Similarity=0.015 Sum_probs=58.8
Q ss_pred CchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC----Ch---hhhH-HHHHHHHhhccC-C
Q 008746 76 DIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL----RV---ANLV-EYLVGPLGLGLK-D 146 (555)
Q Consensus 76 ~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~---~ei~-~~l~~~i~~~l~-d 146 (555)
+-..+-=+.|-+.-....+||..--++.++.|.|++.||.|.-+||..++.+ +. .|+. ..+...+.+++. .
T Consensus 21 nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~ 100 (462)
T KOG2199|consen 21 NTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESK 100 (462)
T ss_pred cccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhc
Confidence 3334444555666667778888888999999999999999999999988765 11 2332 445666777777 4
Q ss_pred CChHHHHHHHH
Q 008746 147 NNSYVRTVAVI 157 (555)
Q Consensus 147 ~~~~VRk~A~l 157 (555)
.++-|+.+-..
T Consensus 101 ~h~kV~~k~~~ 111 (462)
T KOG2199|consen 101 AHPKVCEKMRD 111 (462)
T ss_pred ccHHHHHHHHH
Confidence 57888876544
No 213
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=62.63 E-value=1.4e+02 Score=28.22 Aligned_cols=129 Identities=13% Similarity=-0.027 Sum_probs=78.3
Q ss_pred hhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHH-HHHHHHhcCC--ChhhhHHHHHHHHhhccC
Q 008746 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIR-GLALRSLCSL--RVANLVEYLVGPLGLGLK 145 (555)
Q Consensus 69 i~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr-~lAL~~L~~i--~~~ei~~~l~~~i~~~l~ 145 (555)
-.+..++-++.+-+|..++......-.+..+-.+-.+..+ -+|..+. +.|-+.+|.+ ..++ ..+.+.+...
T Consensus 52 ~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~~~~~~~~l~~--~~~Wd~vD~~~~~i~g~~~~~~~~----~~~~l~~W~~ 125 (208)
T cd07064 52 LELWQQPEREYQYVAIDLLRKYKKFLTPEDLPLLEELITT--KSWWDTVDSLAKVVGGILLADYPE----FEPVMDEWST 125 (208)
T ss_pred HHHHcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcC--CchHHHHHHHHHHHhHHHHhCChh----HHHHHHHHHc
Confidence 3577787788888887766665333222222222223332 1344443 4555555543 2233 2455668889
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc
Q 008746 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (555)
Q Consensus 146 d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~ 208 (555)
|++.++|+.|+.+..+.-+ ..+ . ..+...+..+ ++|++..|..+.-=+|-++++.+|+
T Consensus 126 s~~~W~rR~ai~~~l~~~~-~~~-~--~~l~~~~~~~-~~d~e~fI~KAiGW~LRe~~k~d~~ 183 (208)
T cd07064 126 DENFWLRRTAILHQLKYKE-KTD-T--DLLFEIILAN-LGSKEFFIRKAIGWALREYSKTNPD 183 (208)
T ss_pred CCcHHHHHHHHHHHHHHHH-ccC-H--HHHHHHHHHh-CCChHHHHHHHHHHHHHHHhccCHH
Confidence 9999999999998776433 222 1 2233344444 6898999998888889999988764
No 214
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=60.52 E-value=1.1e+02 Score=32.45 Aligned_cols=72 Identities=10% Similarity=0.016 Sum_probs=47.4
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCccc--CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 134 ~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~--~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
..++..+..++.+++|.-|...-..+.++|.+.++... ...+.+.+.+.+.+...+..++.++..++.+...
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIING 205 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhc
Confidence 34455566888899999999999999999988877640 1123334444433356677788888888888653
No 215
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=60.21 E-value=30 Score=32.05 Aligned_cols=80 Identities=16% Similarity=0.057 Sum_probs=41.9
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhcCC-CChHHH----HHHHHHHhHcCCCChHHHHHHHHHhcCC--ChhhhHHHHH
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKV-NPDLAL----LTINFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLV 137 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~~~-~~e~~~----l~in~l~kDL~~~n~~vr~lAL~~L~~i--~~~ei~~~l~ 137 (555)
++-...=+...++..+-++...+..+.+. .++-.+ -.|-.+++.|++.|+.+.+.+|++|..+ ..+.+-+.+.
T Consensus 40 Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLv 119 (183)
T PF10274_consen 40 LPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALV 119 (183)
T ss_pred HHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 33333333444555555555555555544 333211 2345566677777777777777766665 2233445555
Q ss_pred HHHhhcc
Q 008746 138 GPLGLGL 144 (555)
Q Consensus 138 ~~i~~~l 144 (555)
|..++++
T Consensus 120 PyyrqLL 126 (183)
T PF10274_consen 120 PYYRQLL 126 (183)
T ss_pred HHHHHHH
Confidence 5555543
No 216
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=58.21 E-value=41 Score=37.19 Aligned_cols=82 Identities=20% Similarity=0.171 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHH
Q 008746 114 PMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVA 193 (555)
Q Consensus 114 ~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~ 193 (555)
+-+-+.|+-+||.=... +.....+-..+.-.+|.+||..=+|+.=++--+|.. +..+.|.++ ..|.|+.|..
T Consensus 622 ~avLgiAliAMgeeig~---eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~----~vlDtLsk~-shd~D~eva~ 693 (878)
T KOG2005|consen 622 LAVLGIALIAMGEEIGS---EMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV----NVLDTLSKF-SHDGDLEVAM 693 (878)
T ss_pred chhhhhhhhhhhhhhhh---HHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc----hHHHHHHHh-ccCcchHHHH
Confidence 55667777777753333 335566677788899999999999999998888874 578999998 7999999999
Q ss_pred HHHHHHHHHH
Q 008746 194 NCLSALQEIW 203 (555)
Q Consensus 194 ~a~~~L~~i~ 203 (555)
+|+.++.-+.
T Consensus 694 naIfamGLiG 703 (878)
T KOG2005|consen 694 NAIFAMGLIG 703 (878)
T ss_pred HHHHHhcccc
Confidence 9998887664
No 217
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=58.01 E-value=23 Score=29.86 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=42.1
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccc---------ee----eeccCCcHHHHHHHHHHHHHccC
Q 008746 306 PLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK---------HF----YCQYNEPSYVKKLKLEMLTAVAN 367 (555)
Q Consensus 306 ~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~---------~f----~~~~~dd~~Ir~~aL~iL~~l~~ 367 (555)
.|..-+.++++++.+-||..+..++.+.++-|..++. .| ....+.+..||.++++++..|++
T Consensus 41 ~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 41 AIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHhC
Confidence 3433456678999999999999999888765443331 11 11224468899999998888753
No 218
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=57.81 E-value=99 Score=34.59 Aligned_cols=101 Identities=23% Similarity=0.297 Sum_probs=70.2
Q ss_pred HHHHHHHhHcCCCChHHHHHHHHHhcCC----ChhhhHHHHHHHHhhc-cCCCChHHHHHHHHHHHHHhhhCCCcccCCC
Q 008746 100 LTINFLQRDCKDEDPMIRGLALRSLCSL----RVANLVEYLVGPLGLG-LKDNNSYVRTVAVIGVLKLYHISAPTCIDAD 174 (555)
Q Consensus 100 l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~~ei~~~l~~~i~~~-l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~ 174 (555)
=+..-|..-+++.+..++..+|+.+..+ ..+.+-+.+.|.|.++ +.+.+.+||-.++.|+..+.+.-...-..+.
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~ 468 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDE 468 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4456777788999999999999998885 3456677888888877 5678999999999999999842211100133
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHH
Q 008746 175 FPPTLKHLMLNDPDPQVVANCLSALQEI 202 (555)
Q Consensus 175 ~~~~l~~lll~d~d~~V~~~a~~~L~~i 202 (555)
+.+.++. .+-.||.+....+.+....
T Consensus 469 ~lpi~~~--~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 469 LLPILKC--IKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred HHHHHHH--hcCCCcHHHHHHHHHHHHH
Confidence 3333333 2456888777766655544
No 219
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.72 E-value=2.2e+02 Score=28.80 Aligned_cols=60 Identities=23% Similarity=0.165 Sum_probs=42.0
Q ss_pred HHHHhHcCCCChHHHHHHHHHhcCCChh---h---hHHHHHHHHhhccCCCChHHHHHHHHHHHHHhh
Q 008746 103 NFLQRDCKDEDPMIRGLALRSLCSLRVA---N---LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (555)
Q Consensus 103 n~l~kDL~~~n~~vr~lAL~~L~~i~~~---e---i~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~ 164 (555)
+.+..-+.++||.+|..|.+.+.++... . --+..++.+.+++.++.+ -.-|+.|+.++.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq 71 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ 71 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh
Confidence 4566777888999999998777776443 1 113456777788888877 5566777777765
No 220
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=57.28 E-value=38 Score=30.63 Aligned_cols=77 Identities=14% Similarity=0.061 Sum_probs=49.7
Q ss_pred HHHHHHhccccCCCChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhccCCCcchhhcccc
Q 008746 467 ALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQVVFYGFFP 545 (555)
Q Consensus 467 ~~~wiiGEy~~~~~~~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~~~~~d~d~evq~Ra~~ 545 (555)
-..+++-.+...+.+...-+..+.+.+..-+ .++-..++.|+.=+.-..+ ..+|-+.-+|.++.+..+.+.|.-|+.
T Consensus 78 lL~~lv~~~p~~vle~~~~l~~~ld~l~~lp-~~~a~~ll~Al~PLi~~s~-~lrd~lilvLRKamf~r~~~~R~~Av~ 154 (158)
T PF14676_consen 78 LLSELVRKAPLTVLECSSKLKELLDYLSFLP-GDVAIGLLRALLPLIKFSP-SLRDSLILVLRKAMFSRELDARQMAVN 154 (158)
T ss_dssp HHHHHHHH-HHHHS-S-HHHHGGGGGTTTS--HHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHHTT-SSHHHHHHHHH
T ss_pred HHHHHHHHChHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 3344444444444455555666666666666 7777778888877665554 678888899999999999988877653
No 221
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.20 E-value=52 Score=32.98 Aligned_cols=64 Identities=25% Similarity=0.161 Sum_probs=42.7
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHhhhCCCc-c--cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT-C--IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 138 ~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~-~--~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
..+...+.+.+|.|||.|+.-+..+--. +.. . .....++.+..+ ..|.++ ...|+.++..++++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL-~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQL-LKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHH-ccCccc--ccHHHHHHHHHHhh
Confidence 3566889999999999999766655322 111 1 113456777787 689888 55666777777664
No 222
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=56.84 E-value=67 Score=26.97 Aligned_cols=49 Identities=8% Similarity=-0.014 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC
Q 008746 79 LKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL 127 (555)
Q Consensus 79 ~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i 127 (555)
...-....+..+...+++..--++..+.+-++++||.+.-.||..|=.+
T Consensus 16 p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~l 64 (115)
T cd00197 16 PDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYC 64 (115)
T ss_pred CCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3334444455554555566667888999999999999988888877554
No 223
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.73 E-value=82 Score=37.02 Aligned_cols=104 Identities=21% Similarity=0.244 Sum_probs=69.0
Q ss_pred HHHHHHHHhH-----cCCCChHHHHHHHHHhcCC--Chhhh--HHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc
Q 008746 99 LLTINFLQRD-----CKDEDPMIRGLALRSLCSL--RVANL--VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT 169 (555)
Q Consensus 99 ~l~in~l~kD-----L~~~n~~vr~lAL~~L~~i--~~~ei--~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~ 169 (555)
--++|.+-+. ..|-.|.||+..+..||-- ..|+. -...+..+-=.|+|.+.-||++.+.++.++|..+...
T Consensus 281 ~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~ 360 (1048)
T KOG2011|consen 281 ESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDK 360 (1048)
T ss_pred HHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccc
Confidence 3345555553 3678999999999999863 22442 2334445555689999999999999999999873322
Q ss_pred cc----CCCchHHHHHHHhcCCChHHHHHHHHHHHHH
Q 008746 170 CI----DADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (555)
Q Consensus 170 ~~----~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i 202 (555)
-. -..|-+.+.++...|-|++|++.++..+...
T Consensus 361 ~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 361 DKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 10 0234455555434678888888887766554
No 224
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=56.53 E-value=81 Score=28.49 Aligned_cols=120 Identities=10% Similarity=0.102 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhc
Q 008746 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI 233 (555)
Q Consensus 154 ~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l 233 (555)
-+..=+.++|+.++... ++.++.+...+...++..+ ..-+.+|.++.+..|-...+ +...+..+++.+
T Consensus 37 LG~~IL~~~fk~h~~~r--~~Ile~l~~rI~~~s~~~~-~~~idlL~~lv~~~p~~vle---------~~~~l~~~ld~l 104 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIR--SEILEQLLNRIVTKSSSPS-SQYIDLLSELVRKAPLTVLE---------CSSKLKELLDYL 104 (158)
T ss_dssp HHHHHHHHHHHH-GGGH--HHHHHHHHHHHHH--SS---HHHHHHHHHHHHH-HHHHS----------S-HHHHGGGGGT
T ss_pred HHHHHHHHHHHHhHHHH--HHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHChHHHHH---------HHHHHHHHHHHH
Confidence 44445667777777765 5667766666555555433 34467788887765521000 111222233333
Q ss_pred CCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHH
Q 008746 234 KEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVF 285 (555)
Q Consensus 234 ~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i 285 (555)
....+-.-..+++.+.=+...+++-...++-.+...+-+.....+..|++.+
T Consensus 105 ~~lp~~~a~~ll~Al~PLi~~s~~lrd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 105 SFLPGDVAIGLLRALLPLIKFSPSLRDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 3333333344444443333333333334444444444455555555555444
No 225
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=56.16 E-value=24 Score=31.83 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=65.9
Q ss_pred CCcchhHHHhhh-hcCCCCchhHHHHHHHHHHhcCCCChHHHH------HHHHHHhHcC--CCChHHHHHHHHHhcCCCh
Q 008746 59 IDVSAVFGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPDLALL------TINFLQRDCK--DEDPMIRGLALRSLCSLRV 129 (555)
Q Consensus 59 ~d~s~lf~~vi~-~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l------~in~l~kDL~--~~n~~vr~lAL~~L~~i~~ 129 (555)
.+....+.+.++ .+...+...+..+.-+++.+++..||++-- ..+.+..-.. ++++.+...+++.++.-+.
T Consensus 38 ~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~ 117 (157)
T PF11701_consen 38 EEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI 117 (157)
T ss_dssp HHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc
Confidence 343444444443 455556667788888888888888876321 1233444444 6778888888888877544
Q ss_pred hh-----hHHHHHHHHhhccC-CCChH-HHHHHHHHHHHH
Q 008746 130 AN-----LVEYLVGPLGLGLK-DNNSY-VRTVAVIGVLKL 162 (555)
Q Consensus 130 ~e-----i~~~l~~~i~~~l~-d~~~~-VRk~A~lal~kl 162 (555)
.+ +.....+.+++.+. ++++. ||=.|+.++.|+
T Consensus 118 d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 118 DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 32 55667777888874 55566 788888888774
No 226
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=54.79 E-value=1.5e+02 Score=27.47 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 008746 256 SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHL 288 (555)
Q Consensus 256 ~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l 288 (555)
++....++..+.+++.+.++.|...+.-++..+
T Consensus 140 ~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l 172 (182)
T PF13251_consen 140 PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGAL 172 (182)
T ss_pred HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 345566788888899998888887776666544
No 227
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=54.67 E-value=18 Score=23.61 Aligned_cols=28 Identities=21% Similarity=0.018 Sum_probs=21.2
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHHHh
Q 008746 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLY 163 (555)
Q Consensus 136 l~~~i~~~l~d~~~~VRk~A~lal~kl~ 163 (555)
.++.+.+++.++++.+++.|+.++..+.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3455667777888999999998887763
No 228
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=54.12 E-value=28 Score=34.98 Aligned_cols=71 Identities=15% Similarity=0.328 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhccCchH-HHHHHHHHHHHhcCCcchhHHHHHH--HHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 008746 260 FDIMNLLEDRLQHANGA-VVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (555)
Q Consensus 260 ~~i~~~l~~~L~s~~~a-V~~eai~~i~~l~~~~~~~~~~~l~--~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~ 331 (555)
..+...+...++++++. .+.-|.+-|.++-...|+. ..++. .....+.-+++++|+++||-||+++..++.
T Consensus 355 y~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~-~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 355 YEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI-NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH-HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 45677788888887765 2223334444332222221 11222 123345678999999999999999987764
No 229
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=54.11 E-value=31 Score=31.10 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=67.4
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHH
Q 008746 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPV 225 (555)
Q Consensus 146 d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~ 225 (555)
...+.||-.|.+++.|+....++.. ...+.+.+..+ ..+.+..-...++.++..+.+-.|+ .|... +.+...
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~-~~~~~~~i~~~-~~~~~~d~~i~~~~~l~~lfp~~~d----v~~~l--~~~eg~ 87 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEF-KEKISDFIESL-LDEGEMDSLIIAFSALTALFPGPPD----VGSEL--FLSEGF 87 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HCCHHCCHHHHHHHHHHHHCTTTHH----HHHHH--CCTTTH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHH-HccccchhHHHHHHHHHHHhCCCHH----HHHHH--HhhhhH
Confidence 4678999999999999986666554 12344555555 3554444566777778877665443 22221 122223
Q ss_pred HHHHHhhcC--CCChhHHHHHHHHHHccCCCChh---HHHHHHHHHHHHhc
Q 008746 226 IYYLLNRIK--EFSEWAQCLVLELVAKYVPLDSN---EIFDIMNLLEDRLQ 271 (555)
Q Consensus 226 ~~~L~~~l~--~~~pw~q~~iL~~L~~~~~~~~~---~~~~i~~~l~~~L~ 271 (555)
...+..... ..++-.|..++++|..-+-+..- -.....+.+...++
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~ 138 (157)
T PF11701_consen 88 LESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYK 138 (157)
T ss_dssp HHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTT
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 444444444 45667788888877775533111 01344556666663
No 230
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=53.58 E-value=32 Score=35.48 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=67.9
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhcc
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL 144 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l 144 (555)
+-.|++.+ ..+...||++--++..|++.-|+++--+++.-.--..|.+-.||-.|++-|..++..+....+.+.+.++|
T Consensus 27 y~~il~~~-k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLL 105 (460)
T KOG2213|consen 27 YEGILKAV-KGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLL 105 (460)
T ss_pred HHHHHHHh-hcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHH
Confidence 33455544 34567899999999999999999999999987777788899999999999999988888888888888888
Q ss_pred C
Q 008746 145 K 145 (555)
Q Consensus 145 ~ 145 (555)
+
T Consensus 106 n 106 (460)
T KOG2213|consen 106 N 106 (460)
T ss_pred H
Confidence 7
No 231
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=52.78 E-value=1.5e+02 Score=26.22 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 153 TVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 153 k~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
-.+.+.++=+.+..|+.. .+.+..+.+. ++.+||.|..-|+.+|-.+.+.
T Consensus 19 w~~ileicD~In~~~~~~--k~a~rai~kr-l~~~n~~v~l~AL~LLe~~vkN 68 (139)
T cd03567 19 WEAIQAFCEQINKEPEGP--QLAVRLLAHK-IQSPQEKEALQALTVLEACMKN 68 (139)
T ss_pred HHHHHHHHHHHHcCCccH--HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHH
Confidence 345556666666555533 4566777787 5899999999999999888764
No 232
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=52.37 E-value=1.5e+02 Score=25.18 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhHcC-CCChHHHHHHHHHhcCCCh-----hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhC
Q 008746 97 LALLTINFLQRDCK-DEDPMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS 166 (555)
Q Consensus 97 ~~~l~in~l~kDL~-~~n~~vr~lAL~~L~~i~~-----~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~ 166 (555)
...-+..++.+.|+ +..+..|..|...++.+.. +++++.++..+.+....... .+.|.+|+..+++..
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 33455688888888 7788999988888887744 56666666666665555544 688999999999755
No 233
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=51.78 E-value=29 Score=23.02 Aligned_cols=30 Identities=37% Similarity=0.458 Sum_probs=26.0
Q ss_pred CCchHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 008746 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (555)
Q Consensus 173 ~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~ 203 (555)
.+.++.|..+ +.+.|+.|+..|+.+|..++
T Consensus 11 ~g~i~~Lv~l-l~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQL-LKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHH-TTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHH-HcCCCHHHHHHHHHHHHHHh
Confidence 5678899998 68999999999999998774
No 234
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=51.67 E-value=67 Score=27.93 Aligned_cols=74 Identities=19% Similarity=0.130 Sum_probs=53.2
Q ss_pred hhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc----cCCCchHHHHHHHhc--CCChHHHHHHHHHHHHHHh
Q 008746 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC----IDADFPPTLKHLMLN--DPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 131 ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~----~~~~~~~~l~~lll~--d~d~~V~~~a~~~L~~i~~ 204 (555)
.-....+..|++-+.+++|.|...|+.-+--+.+.++..+ ...+|...+.+++.. ..++.|..-++.++..-..
T Consensus 33 ~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 33 NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3445566777888999999999999888877777665533 124677778887433 3578888888887776544
No 235
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=50.69 E-value=4.1e+02 Score=29.93 Aligned_cols=246 Identities=19% Similarity=0.151 Sum_probs=129.5
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHHHHh-hhCCCcccCCCchHHHHHH-HhcCCChHHHHHHHHHHHHHHhhccccch
Q 008746 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLY-HISAPTCIDADFPPTLKHL-MLNDPDPQVVANCLSALQEIWSLEASTSE 211 (555)
Q Consensus 134 ~~l~~~i~~~l~d~~~~VRk~A~lal~kl~-~~~p~~~~~~~~~~~l~~l-ll~d~d~~V~~~a~~~L~~i~~~~~~~~~ 211 (555)
+.+...+.+. .+.+++||- ++.-+..+. ..+| -+..|.-+ =+...|+.=...=+..|..+.+.=|.
T Consensus 239 ~el~~~l~k~-l~~~~~~rp-~~~~l~~~~ff~D~-------~~~aLrfLD~l~~kdn~qKs~Flk~Ls~~ip~fp~--- 306 (700)
T KOG2137|consen 239 SELRESLKKL-LNGDSAVRP-TLDLLLSIPFFSDP-------GLKALRFLDDLPQKDNSQKSSFLKGLSKLIPTFPA--- 306 (700)
T ss_pred HHHHHHHHHH-hcCCcccCc-chhhhhcccccCCc-------hhhhhhhcccccccCcHHHHHHHHHHHHhhccCCH---
Confidence 3344444443 356777887 444444332 2222 12233221 01225666666666666666543221
Q ss_pred HhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCCh-hH-HHHHHHHHHHHhccCch----HHHHHHHHHH
Q 008746 212 EASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS-NE-IFDIMNLLEDRLQHANG----AVVLSTIKVF 285 (555)
Q Consensus 212 ~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~-~~-~~~i~~~l~~~L~s~~~----aV~~eai~~i 285 (555)
+. +.++ +...|+..+. ++-.+-.++.+...+....+ .+ ..+++..+.+.++...+ ..++|=..++
T Consensus 307 -----rv-~~~k-iLP~L~~el~--n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL 377 (700)
T KOG2137|consen 307 -----RV-LFQK-ILPTLVAELV--NTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLL 377 (700)
T ss_pred -----HH-HHHh-hhhHHHHHhc--cccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHH
Confidence 11 1122 4444554432 22222233333322221111 11 24566777777663222 3456666666
Q ss_pred HHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccc-----ccccceeeeccCCcHHHHHHHHH
Q 008746 286 LHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIF-----ASDYKHFYCQYNEPSYVKKLKLE 360 (555)
Q Consensus 286 ~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~-----~~~~~~f~~~~~dd~~Ir~~aL~ 360 (555)
..-.+. + .+.+.+.+.|.+=+++.+..++-.+|+.+-.....-+..+ -+.+... |......++|.-.|.
T Consensus 378 ~~Kt~~-e----~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l-~~~tt~~~vkvn~L~ 451 (700)
T KOG2137|consen 378 KEKTPP-E----EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL-AFKTTNLYVKVNVLP 451 (700)
T ss_pred HhhCCh-H----HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc-hhcccchHHHHHHHH
Confidence 654433 2 2344555556566778889999999999887766543222 2344444 556677788888887
Q ss_pred HHHHccCCCCHHHHHHHHH---HHhhcCCHHHHHHHHHHHHHHhcccCc
Q 008746 361 MLTAVANESNTYEIVTELC---EYAANVDIPIARESIRAVGKIALQQYD 406 (555)
Q Consensus 361 iL~~l~~~~N~~~Iv~eL~---~y~~~~d~~~~~~~i~~i~~la~~~~~ 406 (555)
-+..+.+.--.-.+++++. ...+..|+.+....++....++.+.++
T Consensus 452 c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 452 CLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 7777752222223555554 444566899988888888888876544
No 236
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=50.05 E-value=2.4e+02 Score=31.96 Aligned_cols=100 Identities=17% Similarity=0.089 Sum_probs=60.9
Q ss_pred HHHHHHHhHcCCCChHHHHHHHHHhcCCChh---hhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc---cCC
Q 008746 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVA---NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDA 173 (555)
Q Consensus 100 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~---ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~---~~~ 173 (555)
+.+|.+..=.-+.+. ..|+..|++++.| ++...+ -..+.. +.-|..|+.-++.+.+..|.-+ .+.
T Consensus 39 ~l~~~l~~y~~~t~s---~~~~~il~~~~~P~~K~~~~~l----~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t 109 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNS---QRALEILVGVQEPHDKHLFDKL----NDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQT 109 (668)
T ss_pred HHHHHHHHHHhhcCc---HHHHHHHHhcCCccHHHHHHHH----HHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcC
Confidence 345555543333332 2466666777666 333322 233332 4566677777777777766644 234
Q ss_pred CchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc
Q 008746 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (555)
Q Consensus 174 ~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~ 208 (555)
.+++.|.++|..|.|..|+.+|+.+|..+.++-|.
T Consensus 110 ~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 110 PLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 56666666667899999999999988888876554
No 237
>PF05536 Neurochondrin: Neurochondrin
Probab=49.59 E-value=4e+02 Score=29.41 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=94.6
Q ss_pred ChHHHHHHHHHHHHHhhhCCCcccCCCch---HHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHH
Q 008746 148 NSYVRTVAVIGVLKLYHISAPTCIDADFP---PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKP 224 (555)
Q Consensus 148 ~~~VRk~A~lal~kl~~~~p~~~~~~~~~---~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~ 224 (555)
++..-+.-+++++..|-.+|+....++++ |.+.+.+.+.++..+..-++..|..+...+.+ ...++...
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G--------~~aLl~~g 140 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEG--------AKALLESG 140 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHh--------HHHHHhcC
Confidence 55666677777777776677665444444 44555543444457888888888888755443 12233333
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHccCC--------CChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcc---
Q 008746 225 VIYYLLNRIKEFSEWAQCLVLELVAKYVP--------LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT--- 293 (555)
Q Consensus 225 ~~~~L~~~l~~~~pw~q~~iL~~L~~~~~--------~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~--- 293 (555)
.+..|++.+.. .+..+-..+.++..... ..+.....++..+...+......-.++....+..+-+..+
T Consensus 141 ~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~ 219 (543)
T PF05536_consen 141 AVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILP 219 (543)
T ss_pred CHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccc
Confidence 45566665544 44444444444444321 1222333455555555555444555666665544322211
Q ss_pred ---hhHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHhhC
Q 008746 294 ---DVHQQVYERIKAPLLTLVSS-GSPEQSYAVLSHLHILVMRA 333 (555)
Q Consensus 294 ---~~~~~~l~~i~~~L~~ll~~-~~~~~ry~aL~~l~~l~~~~ 333 (555)
.....-...+...+..++.+ -.+..|-.++.....++...
T Consensus 220 ~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 220 LESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLL 263 (543)
T ss_pred cccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 01122233444445555554 44557888888888777654
No 238
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=49.24 E-value=4.5e+02 Score=29.99 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=56.0
Q ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc
Q 008746 133 VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (555)
Q Consensus 133 ~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~ 208 (555)
...++..+..+..|+=+.||+.|+-.++-+...-|+.- ..++..+..- +.|++--+.+.|..+|..+....|.
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE--~~LL~~lVNK-lGDpqnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE--NNLLVLLVNK-LGDPQNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH--HHHHHHHHHh-cCCcchhhhhhHHHHHHHHHhhCCc
Confidence 34455556666778889999999999999988788863 4555555555 5898888888999999998887775
No 239
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=48.79 E-value=38 Score=34.31 Aligned_cols=107 Identities=18% Similarity=0.157 Sum_probs=54.6
Q ss_pred cCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHH--HH---------HHHHHHhHcCCCChHHHHHHHHHhc
Q 008746 57 IGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLA--LL---------TINFLQRDCKDEDPMIRGLALRSLC 125 (555)
Q Consensus 57 ~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~--~l---------~in~l~kDL~~~n~~vr~lAL~~L~ 125 (555)
.|.....+|..+++..++++..++-+..+ +..+...+|+.. +. ....|.+-+.+++++++..|++.++
T Consensus 52 ~~~~~~~~~l~lL~~~~~~~d~v~yvL~l-i~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt 130 (312)
T PF03224_consen 52 DGDQYASLFLNLLNKLSSNDDTVQYVLTL-IDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILT 130 (312)
T ss_dssp ----------HHHHHH---HHHHHHHHHH-HHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHH-HHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 45555666777776553333334444444 333444454321 11 3467777888999999999999999
Q ss_pred CCCh-------h---hhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhh
Q 008746 126 SLRV-------A---NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (555)
Q Consensus 126 ~i~~-------~---ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~ 164 (555)
.+-. . +.++.+...+...++.++..++..|+.|+..+.+
T Consensus 131 ~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 131 SLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 8721 2 4555566666665555667777888888888875
No 240
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=47.98 E-value=69 Score=28.30 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=20.2
Q ss_pred CCCchhHHHHHHHHHHHHhhCCcccc
Q 008746 313 SGSPEQSYAVLSHLHILVMRAPFIFA 338 (555)
Q Consensus 313 ~~~~~~ry~aL~~l~~l~~~~p~~~~ 338 (555)
++++++...||..+..++.+.+.-|.
T Consensus 50 ~~n~~v~l~aL~LLe~~vkNCG~~fh 75 (141)
T cd03565 50 NKNHKEVMLTLTVLETCVKNCGHRFH 75 (141)
T ss_pred CCCHHHHHHHHHHHHHHHHHccHHHH
Confidence 46788888899999888888765443
No 241
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=46.04 E-value=5.4e+02 Score=29.95 Aligned_cols=205 Identities=15% Similarity=0.151 Sum_probs=118.1
Q ss_pred HHHHHHHHhcCCCh----hhhHHHHHHHHhhccCC-CChHHHHHHHHHHHHHhhhC---CCcccCCCchHHHHHHHhcCC
Q 008746 116 IRGLALRSLCSLRV----ANLVEYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHIS---APTCIDADFPPTLKHLMLNDP 187 (555)
Q Consensus 116 vr~lAL~~L~~i~~----~ei~~~l~~~i~~~l~d-~~~~VRk~A~lal~kl~~~~---p~~~~~~~~~~~l~~lll~d~ 187 (555)
+.+.-+-..+..+. -+....+...+...+.+ ..|..=-.|..++.+..... |... ..+.......+.-|.
T Consensus 426 ~qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~ 503 (1005)
T KOG2274|consen 426 IQEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDV 503 (1005)
T ss_pred HHHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCC
Confidence 34444445555443 33445555566666554 46766668999999776542 2222 233333334445677
Q ss_pred ChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 008746 188 DPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLE 267 (555)
Q Consensus 188 d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~ 267 (555)
-+.++.+|+.+++..++..+- .. +.+.++.-|..-.++.+.-.-..+|+.|...+.-||+.....-+.+.
T Consensus 504 ~~~~ki~a~~~~~~~~~~~vl------~~----~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~ 573 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYCKVKVL------LS----LQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKIC 573 (1005)
T ss_pred CCchhHHHHHHHHhccCceec------cc----cchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchh
Confidence 888999999999988754331 11 22234445555556777778888888888887777776654444443
Q ss_pred HH-----h-ccCchHHHHHH---HHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCC----chhHHHHHHHHHHHHhhCC
Q 008746 268 DR-----L-QHANGAVVLST---IKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGS----PEQSYAVLSHLHILVMRAP 334 (555)
Q Consensus 268 ~~-----L-~s~~~aV~~ea---i~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~----~~~ry~aL~~l~~l~~~~p 334 (555)
++ + .+.+|-|.-.+ .+-+++......... .++.+.++..+..+. +....+|++.|..+++..|
T Consensus 574 P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~----e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp 649 (1005)
T KOG2274|consen 574 PLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ----ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP 649 (1005)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH----HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC
Confidence 32 2 34556333222 222333222111122 234455555565555 7788999999999998876
Q ss_pred cc
Q 008746 335 FI 336 (555)
Q Consensus 335 ~~ 336 (555)
..
T Consensus 650 ~p 651 (1005)
T KOG2274|consen 650 SP 651 (1005)
T ss_pred CC
Confidence 53
No 242
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=45.89 E-value=2.1e+02 Score=25.28 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=33.8
Q ss_pred ChhH-HHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC
Q 008746 237 SEWA-QCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTL 290 (555)
Q Consensus 237 ~pw~-q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~ 290 (555)
..|. .+.+.+.+.. ++......+.++...+++.|+-|.+-|+.++-.+..
T Consensus 16 ~dw~~il~icD~I~~----~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vk 66 (144)
T cd03568 16 ENWGLILDVCDKVKS----DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAE 66 (144)
T ss_pred cCHHHHHHHHHHHhc----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3564 3445555554 234456777888889999999999888887755543
No 243
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=45.49 E-value=14 Score=39.05 Aligned_cols=127 Identities=22% Similarity=0.217 Sum_probs=76.9
Q ss_pred CCCchhHHHHHHHHHHhcCCCChHHHHHHHH-HHhHcCCCChHHHHHHHHHhcCC--Chhhh------------------
Q 008746 74 TSDIVLKKMCYLYVGNYAKVNPDLALLTINF-LQRDCKDEDPMIRGLALRSLCSL--RVANL------------------ 132 (555)
Q Consensus 74 s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~-l~kDL~~~n~~vr~lAL~~L~~i--~~~ei------------------ 132 (555)
..+--.||..|-||..++...|+.. +.+ +.-.|+|+|+--|++||..++.+ ++..+
T Consensus 23 ~~~~~~~~~~ygyw~~~~pd~~~~g---~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~ 99 (728)
T KOG4535|consen 23 TIKSIEKKVLYGYWSAFIPDTPELG---SPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVM 99 (728)
T ss_pred HHhhhhhhhhhceeeeecCCCCCCC---CceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHH
Confidence 3445578999999999987666641 122 22367999999999999998876 21111
Q ss_pred ----HHHHHHHHhhcc-CCCChHHHHHHHHHHHHHhhhCCCccc----CCCchHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 008746 133 ----VEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCI----DADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (555)
Q Consensus 133 ----~~~l~~~i~~~l-~d~~~~VRk~A~lal~kl~~~~p~~~~----~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~ 203 (555)
+..+...+.-.+ ...+|-|---.+-|+..+....|-.-. ..++...++.. ...+|+.|+.+++.++..+.
T Consensus 100 ~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~-i~~~d~~v~vs~l~~~~~~v 178 (728)
T KOG4535|consen 100 IACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPY-IRHKDVNVRVSSLTLLGAIV 178 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-hhcCCCChhhHHHHHHHHHH
Confidence 111122222222 223333333444455555444443211 13566778887 58899999999999888775
Q ss_pred h
Q 008746 204 S 204 (555)
Q Consensus 204 ~ 204 (555)
.
T Consensus 179 ~ 179 (728)
T KOG4535|consen 179 S 179 (728)
T ss_pred h
Confidence 4
No 244
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=43.19 E-value=3.2e+02 Score=28.06 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHHHHHhhhCCCcccCCCchH----HHHHHHhcCCCh-HHHHHHHHHHHHHH
Q 008746 147 NNSYVRTVAVIGVLKLYHISAPTCIDADFPP----TLKHLMLNDPDP-QVVANCLSALQEIW 203 (555)
Q Consensus 147 ~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~----~l~~lll~d~d~-~V~~~a~~~L~~i~ 203 (555)
.+-.+|..|+..+..+++++.... +.+.+ .+.+.+++...+ .....|+..|..++
T Consensus 280 ~h~~LRd~AA~ll~~i~~~f~~~y--~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 280 NHWALRDYAARLLAQICRKFSTSY--NTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCC--CcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 456999999999999998877765 44444 344443444333 33677777777664
No 245
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=42.78 E-value=34 Score=30.30 Aligned_cols=27 Identities=22% Similarity=0.119 Sum_probs=15.5
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHHH
Q 008746 135 YLVGPLGLGLKDNNSYVRTVAVIGVLK 161 (555)
Q Consensus 135 ~l~~~i~~~l~d~~~~VRk~A~lal~k 161 (555)
.+...+..++.++++.|+|.|+-|+..
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~ 43 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLT 43 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344444556666666666666666554
No 246
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=41.46 E-value=1.5e+02 Score=25.93 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=52.0
Q ss_pred HHHHHHHHHhccccCCCC-hHHHHHHHHHhhhcC------CcHHHHHHHHHHHHHHHhcCCch---hHHHHHHHHHHhcc
Q 008746 464 AKAALIWMLGEYSQDMQD-APYILESLTENWEEE------PSAEVRLHLLTAVMKCFFKRPPE---TQKVLGAALAAGLA 533 (555)
Q Consensus 464 ~~~~~~wiiGEy~~~~~~-~~~~l~~l~~~~~~e------~~~~vr~~~L~a~~Kl~~~~p~~---~~~~l~~vl~~~~~ 533 (555)
+..++.-++++.++..+. ....++.+.+.|... ........+|.++.+.|.++|+. .-..+.+++..|..
T Consensus 25 ~~~sL~~i~s~~pYi~d~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~F~r~pelm~~~N~~FIQ~i~~~~~ 104 (135)
T PF13981_consen 25 VALSLNDILSKPPYINDPEIASWLQKLCENFFDNFNLQLMNKDKLNQAILNFFIDRFSRQPELMISNNGAFIQLIAQAMT 104 (135)
T ss_dssp HHHHHHHHHTSTTTTC-HHHHHHHHHHHHHHHHHHHHHC---HHHHHHCHHHHHHHHHHTTTHHHHTHHHHHHHHHHHCC
T ss_pred hHhHHHHHhccCcccCCHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHhCHhHHHHcccHHHHHHHHHHH
Confidence 444455666665554431 223333333222111 11556668999999999999952 24556777788888
Q ss_pred CCCcchhhcccc----ccccCc
Q 008746 534 DFHQVVFYGFFP----PFSFPQ 551 (555)
Q Consensus 534 d~d~evq~Ra~~----~l~~~~ 551 (555)
..|+++++.|.. ||..|.
T Consensus 105 ~~~~~~k~~A~~LY~~YL~~~~ 126 (135)
T PF13981_consen 105 HGDDEIKQKARDLYKKYLQLPR 126 (135)
T ss_dssp -TSCCCHHHHHHHHHHHCCSTT
T ss_pred hccHHHHHHHHHHHHHHhcChh
Confidence 779999988763 566543
No 247
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=41.45 E-value=2.4e+02 Score=27.44 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=48.6
Q ss_pred cCCcHHHHHHHHHHHHHcc-CCCCHHHH------------HHHHHHHhhcC-CHHHHHHHHHHHHHHhcccCcH------
Q 008746 348 YNEPSYVKKLKLEMLTAVA-NESNTYEI------------VTELCEYAANV-DIPIARESIRAVGKIALQQYDV------ 407 (555)
Q Consensus 348 ~~dd~~Ir~~aL~iL~~l~-~~~N~~~I------------v~eL~~y~~~~-d~~~~~~~i~~i~~la~~~~~~------ 407 (555)
.+.+.+=++.+||.|.+|+ .+.|++-| +.-|..++... |.-+|+-+|..+..++.-....
T Consensus 134 ~~~~lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~ 213 (257)
T PF12031_consen 134 PHSPLSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAM 213 (257)
T ss_pred CCCCCCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3455678999999999986 67776654 44444566554 5567777777777777654321
Q ss_pred -HHHHHHHHHHhhcc
Q 008746 408 -NAIVDRLLQFLEME 421 (555)
Q Consensus 408 -~~~i~~ll~ll~~~ 421 (555)
+.++..++.+++.+
T Consensus 214 q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 214 QKPCISHLIAFIEDA 228 (257)
T ss_pred hhchHHHHHHHHHHH
Confidence 12566677777654
No 248
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=41.25 E-value=2.9e+02 Score=25.69 Aligned_cols=129 Identities=15% Similarity=0.126 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhC-CCcccCCCchHHHHHHHhcCCC----hHHHHHHHHHHHHHHh
Q 008746 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-APTCIDADFPPTLKHLMLNDPD----PQVVANCLSALQEIWS 204 (555)
Q Consensus 130 ~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~-p~~~~~~~~~~~l~~lll~d~d----~~V~~~a~~~L~~i~~ 204 (555)
++++..++..+.+....+-..||-.|..++.++.... |..-..| -.+.|.+.+..+.. ...-..+...+..+..
T Consensus 2 ~~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~ 80 (193)
T PF12612_consen 2 PELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD 80 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc
Confidence 5677777778888878888899999999999998322 1100012 22455554222221 1112223333332221
Q ss_pred hccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCC---CChhHHHHHHHHHHHHhcc
Q 008746 205 LEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVP---LDSNEIFDIMNLLEDRLQH 272 (555)
Q Consensus 205 ~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~---~~~~~~~~i~~~l~~~L~s 272 (555)
.+ -...+.+.-|+-..+..++-+....-..|..|.. .++.....+.+.+..+++.
T Consensus 81 ~~-------------~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~ 138 (193)
T PF12612_consen 81 LP-------------EYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKE 138 (193)
T ss_pred cH-------------HHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 10 0111233444444555666665555555555542 3444455566666555543
No 249
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=39.80 E-value=4.2e+02 Score=26.95 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=66.4
Q ss_pred CCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCCh---hhhHHHHHH-------HHhhcc
Q 008746 75 SDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRV---ANLVEYLVG-------PLGLGL 144 (555)
Q Consensus 75 ~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---~ei~~~l~~-------~i~~~l 144 (555)
++...+..|--.+..+.... ...+.+.|++..+.+..-||+-|..+.. ...+..+.. .+.+++
T Consensus 38 ~~~~~~~~g~~l~~~iL~~~-------~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll 110 (330)
T PF11707_consen 38 SDLSFQSYGLELIRSILQNH-------LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLL 110 (330)
T ss_pred cchhHHHHHHHHHHHHHHHH-------HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHh
Confidence 34446666666666665443 3677888888888888889888887633 333333322 222332
Q ss_pred CCC-----C--------hHHHHHHHHHHHHHhhhCCCcc-----cCCCchHHHHHHHhcCCChHHHHHHHHHHHH
Q 008746 145 KDN-----N--------SYVRTVAVIGVLKLYHISAPTC-----IDADFPPTLKHLMLNDPDPQVVANCLSALQE 201 (555)
Q Consensus 145 ~d~-----~--------~~VRk~A~lal~kl~~~~p~~~-----~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~ 201 (555)
..+ . +.||...+.-++.+....+... ...+....+-+-| .+.++.++...+..|.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l-~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 111 TPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGL-RKDPPETVILILETLKD 184 (330)
T ss_pred ccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcc-cCCCHHHHHHHHHHHHH
Confidence 211 1 3888888888887776543322 1222333333332 33355556666655554
No 250
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=39.45 E-value=6e+02 Score=28.61 Aligned_cols=141 Identities=9% Similarity=-0.004 Sum_probs=95.5
Q ss_pred hhHHHhh---hhcCCCCchhHHHHHHHHHHhcCCCChHH--HHHHHHHHhHcCCCC--hHHHHHHHHHhcCCChhhhHHH
Q 008746 63 AVFGEMV---MCSATSDIVLKKMCYLYVGNYAKVNPDLA--LLTINFLQRDCKDED--PMIRGLALRSLCSLRVANLVEY 135 (555)
Q Consensus 63 ~lf~~vi---~~~~s~~~~~Krl~yl~l~~~~~~~~e~~--~l~in~l~kDL~~~n--~~vr~lAL~~L~~i~~~ei~~~ 135 (555)
.-|.++. .-+..++.++|+=.+-.+....+.-||.. ..+.+.+..++.-.+ ..+....+..--.+..++.-..
T Consensus 251 n~fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~ 330 (690)
T KOG1243|consen 251 NDFVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVR 330 (690)
T ss_pred chHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccccc
Confidence 3355554 34567888899988888888666666542 244566666665433 4444555555555566777777
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 008746 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 136 l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~ 204 (555)
++|.|.++...++.-||-.=+.-+-+....-+..+......+.+..- +.|+|+.++..++..+..+..
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G-~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALG-FLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhh-cccCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999876666666554322222245667777766 589999999999988877643
No 251
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=39.24 E-value=1.6e+02 Score=35.33 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=76.9
Q ss_pred HHHHHHhHcCCCChHHHHHHHHHhcCC---ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCccc---CCC
Q 008746 101 TINFLQRDCKDEDPMIRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI---DAD 174 (555)
Q Consensus 101 ~in~l~kDL~~~n~~vr~lAL~~L~~i---~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~---~~~ 174 (555)
.-+.+..-+.+..+.+|..|.++++.+ .+.|..-.++..+..++.+.+..+||.++.++.......-.... .+=
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~L 896 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPL 896 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhccccccccee
Confidence 346777778899999999998888775 55677777888888999999999999888777665432211110 134
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 175 ~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
+++.|..+ .+|.+..|+.+|-..+..+.+.
T Consensus 897 lv~pllr~-msd~~d~vR~aat~~fa~lip~ 926 (1549)
T KOG0392|consen 897 LVVPLLRR-MSDQIDSVREAATKVFAKLIPL 926 (1549)
T ss_pred ehhhhhcc-cccchHHHHHHHHHHHHHHhcc
Confidence 56667776 4888999999998888887653
No 252
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=38.78 E-value=4.4e+02 Score=26.82 Aligned_cols=88 Identities=22% Similarity=0.158 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCCChhhhHHHHHHHHhhccC-CCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHH
Q 008746 115 MIRGLALRSLCSLRVANLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVA 193 (555)
Q Consensus 115 ~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~-d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~ 193 (555)
.-|.+..+.|+.+....+.+.+...+...+. +.|.-+...++.++.+-+......+ .++.++.+.+- +.|+.+.||.
T Consensus 2 d~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-~~~~~~~~~kG-l~~kk~~vR~ 79 (339)
T PF12074_consen 2 DQRVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-PKKVVDAFKKG-LKDKKPPVRR 79 (339)
T ss_pred cHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-CHHHHHHHHHH-hcCCCCcHHH
Confidence 4566777777777653444555555555543 5678888888888877665542222 25677888887 5899988999
Q ss_pred HHHHHHHHHHh
Q 008746 194 NCLSALQEIWS 204 (555)
Q Consensus 194 ~a~~~L~~i~~ 204 (555)
.-+..+.++..
T Consensus 80 ~w~~~~~~~~~ 90 (339)
T PF12074_consen 80 AWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHh
Confidence 99888888876
No 253
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=38.41 E-value=3.3e+02 Score=25.23 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHH
Q 008746 42 DSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLAL 121 (555)
Q Consensus 42 ~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL 121 (555)
..-++.+.+-=+ ...+. +..++.+...+.-.+.+..+-+|-.+..-...+|+.++ .-|.....+ +.||.-|+
T Consensus 27 ~~ek~~lW~~R~-~l~~~--p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~AL---~LL~~~f~~--~~VR~yAv 98 (184)
T PF00613_consen 27 EEEKELLWKYRY-YLMNN--PEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDAL---ELLSPNFPD--PFVRQYAV 98 (184)
T ss_dssp HHHHHHHHHTHH-HHTTS--GGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHHH---HCTSTT-----HHHHHHHH
T ss_pred HHHHHHHHHCCH-HhhhC--chHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHHH---HHHHhhccH--HHHHHHHH
Confidence 344555555333 33333 33477777777777787777788777776666666543 444444444 99999999
Q ss_pred HHhcCCChhhhHHHHHHHHhhccCCC
Q 008746 122 RSLCSLRVANLVEYLVGPLGLGLKDN 147 (555)
Q Consensus 122 ~~L~~i~~~ei~~~l~~~i~~~l~d~ 147 (555)
+.|.++.+.++.- .+|.+.+++...
T Consensus 99 ~~L~~~~d~~l~~-yLpQLVQaLr~e 123 (184)
T PF00613_consen 99 RRLESLSDEELLF-YLPQLVQALRYE 123 (184)
T ss_dssp HHHCTS-HHHHHH-HHHHHHHHGGGS
T ss_pred HHHHHcCchHHHH-HHHHHHHHheec
Confidence 9999977666554 556666766543
No 254
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.27 E-value=2.1e+02 Score=31.22 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=52.5
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 008746 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (555)
Q Consensus 134 ~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~ 203 (555)
+.+...+-..+.-.++.+|+.--+|.+-++.-+|+. ...+.|.+. ..|.|..|..+++.++.-+.
T Consensus 640 eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm----~vfDtL~r~-shd~dl~v~~ntIfamGLiG 704 (881)
T COG5110 640 EMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQM----NVFDTLERS-SHDGDLNVIINTIFAMGLIG 704 (881)
T ss_pred HHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcch----HHHHHHHHh-ccccchhHHHHHHHHhhccc
Confidence 445566666667789999999999999998888874 477889888 69999999999988876553
No 255
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=37.99 E-value=4.8e+02 Score=27.08 Aligned_cols=257 Identities=14% Similarity=0.128 Sum_probs=121.6
Q ss_pred ChhHHHHHHHHHHccCCC-------ChhHHHHHHHHHHHHhccCc--hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 008746 237 SEWAQCLVLELVAKYVPL-------DSNEIFDIMNLLEDRLQHAN--GAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPL 307 (555)
Q Consensus 237 ~pw~q~~iL~~L~~~~~~-------~~~~~~~i~~~l~~~L~s~~--~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L 307 (555)
+.-+-..+|++|+.+... +.+....+++.....+.+.+ -+++-.+..++-.-.-+..-+.....+++...+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l 138 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAAL 138 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHH
Confidence 334567778887776522 22333346666666665443 356666655554221111111122334454444
Q ss_pred HHHhc-CCCchhHHHHHHHHHHHHhhCCcccccccce----ee-eccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 008746 308 LTLVS-SGSPEQSYAVLSHLHILVMRAPFIFASDYKH----FY-CQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEY 381 (555)
Q Consensus 308 ~~ll~-~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~----f~-~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y 381 (555)
...-+ -+..++-+-.|..+..++..+|..+..|... ++ ..-+-...+|.+++.++..+.- .
T Consensus 139 ~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~-------------~ 205 (372)
T PF12231_consen 139 HNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKK-------------C 205 (372)
T ss_pred HHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH-------------H
Confidence 44332 3456777888888889999999888777651 11 1223334466666665544310 0
Q ss_pred hhcCCHHHHHHHHHHHHHHhcc-c-Cc--HHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHHhCC-CCc---chHHHHHh
Q 008746 382 AANVDIPIARESIRAVGKIALQ-Q-YD--VNAIVDRLLQFLEM-EKDYVTAEALVLVKDLLRKYP-QWS---HDCIAVVG 452 (555)
Q Consensus 382 ~~~~d~~~~~~~i~~i~~la~~-~-~~--~~~~i~~ll~ll~~-~~~~v~~e~i~~i~~ii~~~~-~~~---~~~~~~l~ 452 (555)
+ ..+.++.+.+ ..+-.+ . ++ ...+.+.|..++.. +....+.++|.++..+++..- +.- ..-+.+.+
T Consensus 206 l-~~~~~~s~~~----~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e 280 (372)
T PF12231_consen 206 L-GPNKELSKSV----LEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPE 280 (372)
T ss_pred h-ChhHHHHHHH----HHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHH
Confidence 0 1111111111 111111 0 11 23455666666666 333455577777766664321 111 11122333
Q ss_pred hhcccCCCchHHHHHH--HHHHhccccCCC--ChHHHHHHHHHh----hhcCCcH----HHHHHHHHHHHHHH
Q 008746 453 SISSQNVQEPKAKAAL--IWMLGEYSQDMQ--DAPYILESLTEN----WEEEPSA----EVRLHLLTAVMKCF 513 (555)
Q Consensus 453 ~l~~~~~~~~~~~~~~--~wiiGEy~~~~~--~~~~~l~~l~~~----~~~e~~~----~vr~~~L~a~~Kl~ 513 (555)
..+ +..++.+|..+ +|=.==|....+ ..+..++.+..- ...+... +++..+++.++.++
T Consensus 281 ~cF--n~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 281 KCF--NSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHh--cCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 332 33566666433 554422322221 234555544332 2222223 67777777776663
No 256
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=37.07 E-value=3.2e+02 Score=24.72 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=53.1
Q ss_pred HHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHH
Q 008746 242 CLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYA 321 (555)
Q Consensus 242 ~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~ 321 (555)
..-|+..+.++..+. +-..+....+..+.+|+...+..+........ .....+..+-+.+..++.++.....-+
T Consensus 15 ~~~L~~v~~~W~~~~-----~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~-~tLd~c~~lLP~i~~LL~Sk~E~~i~~ 88 (164)
T PF13925_consen 15 LTNLQVVRTFWRRND-----IKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEK-WTLDLCVDLLPLIEELLQSKYESYISV 88 (164)
T ss_pred HHHHHHHHHHHhcCc-----HHHHHHHHHhcCCchHHHHHHHHHHHhcCcCc-ccHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334555556553221 33344555555888999888887763332211 223333334455567788888888889
Q ss_pred HHHHHHHHHhhCC
Q 008746 322 VLSHLHILVMRAP 334 (555)
Q Consensus 322 aL~~l~~l~~~~p 334 (555)
||+.+..++....
T Consensus 89 aL~~L~~i~~~f~ 101 (164)
T PF13925_consen 89 ALEMLRSILKKFG 101 (164)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887643
No 257
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=36.80 E-value=2e+02 Score=28.53 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc
Q 008746 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT 169 (555)
Q Consensus 130 ~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~ 169 (555)
.+..+.++|.+..++.|.++.+|..++.++.++....|..
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~ 153 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAA 153 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChh
Confidence 3456788999999999999999999999999999866654
No 258
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=36.40 E-value=91 Score=26.86 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccccc
Q 008746 303 IKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFAS 339 (555)
Q Consensus 303 i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~ 339 (555)
+...|..=|+++++.+|+-+|+.|..++..++.-|..
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~ 75 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKR 75 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHH
Confidence 4455555577788999999999999998888765543
No 259
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=36.25 E-value=6e+02 Score=27.65 Aligned_cols=195 Identities=12% Similarity=0.126 Sum_probs=106.2
Q ss_pred eeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhh--c---------CCHHHHHHHHHHHHHHhc---ccCcHHHH
Q 008746 345 YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAA--N---------VDIPIARESIRAVGKIAL---QQYDVNAI 410 (555)
Q Consensus 345 ~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~--~---------~d~~~~~~~i~~i~~la~---~~~~~~~~ 410 (555)
++..|....|...+-++|-++..+-+=..+|+.|..... . .++.++.++..-+++-.. .+|. +
T Consensus 244 iAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~---~ 320 (501)
T PF13001_consen 244 IASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPN---I 320 (501)
T ss_pred eEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCcc---H
Confidence 344566678999999999999888777788999887444 2 356788887777766422 3344 2
Q ss_pred HHHHHHHhhcc--cchhHHHHHHHH---HHHHHhCCCCcchHHHHHhhhcc----c----------CCCchHHHHHHHHH
Q 008746 411 VDRLLQFLEME--KDYVTAEALVLV---KDLLRKYPQWSHDCIAVVGSISS----Q----------NVQEPKAKAALIWM 471 (555)
Q Consensus 411 i~~ll~ll~~~--~~~v~~e~i~~i---~~ii~~~~~~~~~~~~~l~~l~~----~----------~~~~~~~~~~~~wi 471 (555)
+.++..-+... ........+..+ ..+....+. ..+..+...+. . .-.+...|..+--.
T Consensus 321 ~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~---~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~ 397 (501)
T PF13001_consen 321 LQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISP---QILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYET 397 (501)
T ss_pred HHHHhccccCCccccccchhcchhhhcchHHhhhcCH---HHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHH
Confidence 22222222222 122322333333 222222221 11112222110 1 11244556666666
Q ss_pred HhccccCCCC----hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCC---c----hhHHHHHHHHHHhccCCCcchh
Q 008746 472 LGEYSQDMQD----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRP---P----ETQKVLGAALAAGLADFHQVVF 540 (555)
Q Consensus 472 iGEy~~~~~~----~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p---~----~~~~~l~~vl~~~~~d~d~evq 540 (555)
+|.-+...+. --++++.+.+....++ ++++..|-.|+.-+...++ + .....+..++.....+....+|
T Consensus 398 lG~L~~~~p~l~~~d~~li~~LF~sL~~~~-~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R 476 (501)
T PF13001_consen 398 LGLLAKRAPSLFSKDLSLIEFLFDSLEDES-PEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCR 476 (501)
T ss_pred HHHHHccCcccccccHHHHHHHHHHhhCcc-hHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHH
Confidence 7777766653 4567777888876777 9999998777776655443 2 1223333344444444444455
Q ss_pred hccccc
Q 008746 541 YGFFPP 546 (555)
Q Consensus 541 ~Ra~~~ 546 (555)
--|..|
T Consensus 477 ~~avk~ 482 (501)
T PF13001_consen 477 YAAVKY 482 (501)
T ss_pred HHHHHH
Confidence 434444
No 260
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=35.73 E-value=3.4e+02 Score=32.54 Aligned_cols=120 Identities=20% Similarity=0.181 Sum_probs=74.2
Q ss_pred HHHHHHHhhh--cCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHH
Q 008746 24 DLKSQLRQLA--GSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLT 101 (555)
Q Consensus 24 ~~~~~l~~~~--~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~ 101 (555)
|++.+|.+.. .+.+....++|.-.+.|=+|+. .++-+ .|-|.--..+=++.-=-=.|-.+.......|..++-.
T Consensus 821 e~q~~Lldl~qkq~~~~ls~edk~~lWekR~yc~--~~p~a--LPlVL~Sap~W~~~~l~~~y~lL~~Wa~l~Pl~ALel 896 (1639)
T KOG0905|consen 821 ETQEKLLDLIQKQSTLTLSTEDKDLLWEKRLYCT--NEPNA--LPLVLASAPSWDWGNLMDVYQLLHQWAPLRPLIALEL 896 (1639)
T ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHhhhhc--CCCch--hHHHHhcCCCCchhhHHHHHHHHHhccccCHHHHHHh
Confidence 4555555543 3333345666777777766655 34444 6666554444444433345666777777788765511
Q ss_pred HHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccC----CCChHHHH
Q 008746 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLK----DNNSYVRT 153 (555)
Q Consensus 102 in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~----d~~~~VRk 153 (555)
. +-+=++..||+.|..-|+++.+.++.+.+ |.+.+++. -.+|.||-
T Consensus 897 L-----~~kfPDqeVR~~AVqwi~~ls~DeL~d~L-PQlVQALK~E~yl~S~Lv~F 946 (1639)
T KOG0905|consen 897 L-----LPKFPDQEVRAHAVQWIARLSNDELLDYL-PQLVQALKFELYLKSALVQF 946 (1639)
T ss_pred h-----cccCCcHHHHHHHHHHHHhcCcHHHHHHH-HHHHHHHHHHHhccCHHHHH
Confidence 1 12458999999999999999998877643 44455544 35777774
No 261
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=35.56 E-value=2.5e+02 Score=24.57 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 153 TVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 153 k~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
-.+.+.++-..+.+++.. .+....|.+. +..++|.|...|+.+|..+.++
T Consensus 23 w~~~l~icD~i~~~~~~~--kea~~~l~kr-l~~~~~~vq~~aL~lld~lvkN 72 (140)
T PF00790_consen 23 WSLILEICDLINSSPDGA--KEAARALRKR-LKHGNPNVQLLALTLLDALVKN 72 (140)
T ss_dssp HHHHHHHHHHHHTSTTHH--HHHHHHHHHH-HTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccH--HHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHc
Confidence 355555666666554443 4566777787 5789999999999998888765
No 262
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=35.16 E-value=2.8e+02 Score=23.42 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=52.7
Q ss_pred hhHHHHHHHHhhccC-CCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHH-HHHHHHHHHHHhhc
Q 008746 131 NLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVV-ANCLSALQEIWSLE 206 (555)
Q Consensus 131 ei~~~l~~~i~~~l~-d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~-~~a~~~L~~i~~~~ 206 (555)
++...+.|.+.+++. .+.+..|-.+.+-+..+..+.|=. ++.++.+.+.+.....+.-. ..++.++..+++..
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~---~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS---DEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc---HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 467788999999998 788999999999999998765432 55666555554555444333 67777788887654
No 263
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=34.71 E-value=74 Score=30.14 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=47.9
Q ss_pred HHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc
Q 008746 103 NFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (555)
Q Consensus 103 n~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~ 170 (555)
..+.+=..|+|...|-.|+-+.-......-.+.+...+..++.|++.+|+|+..-++--+.+.+|+.+
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V 185 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAILHQLKYKEKTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWV 185 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHH
Confidence 45556667888777776664432222211234556667788999999999999999999999888765
No 264
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=34.30 E-value=1e+02 Score=23.91 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=36.7
Q ss_pred HHHHHHHHhccccCCCC-----hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh
Q 008746 465 KAALIWMLGEYSQDMQD-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFF 514 (555)
Q Consensus 465 ~~~~~wiiGEy~~~~~~-----~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~ 514 (555)
+++++|.+|..|..-.. ..+++..+++-+...+...+|..+.-.++-+..
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC
Confidence 45789999988765322 346777788878777778899998887776644
No 265
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=33.67 E-value=3.7e+02 Score=24.46 Aligned_cols=115 Identities=19% Similarity=0.220 Sum_probs=64.1
Q ss_pred HHHHHHHhhhcCCC-CCChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHH
Q 008746 24 DLKSQLRQLAGSRA-PGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTI 102 (555)
Q Consensus 24 ~~~~~l~~~~~~~~-~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~i 102 (555)
+.+.+|+....... ....+.-++.+.+-=+.. ... +..++.+++.+.=++....+-+|-.+..-...+++-++
T Consensus 9 ~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l-~~~--p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~aL--- 82 (166)
T cd00870 9 KERKELNKILKYPPTTKLTDEEKDLIWKFRFYL-TNN--KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDAL--- 82 (166)
T ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHH-hhC--cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHHH---
Confidence 44555665543221 112344555555533332 222 33455566555556666666666666665555555544
Q ss_pred HHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCC
Q 008746 103 NFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDN 147 (555)
Q Consensus 103 n~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~ 147 (555)
.-|-... +++.||.-|++.|.++.+.++... ++.+.+++...
T Consensus 83 eLL~~~f--~~~~VR~yAV~~L~~~sd~eL~~y-L~QLVQaLKyE 124 (166)
T cd00870 83 ELLSPYF--TNPVVRKYAVSRLKLASDEELLLY-LLQLVQALKYE 124 (166)
T ss_pred HHcCccC--CCHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHhc
Confidence 2222232 368999999999999888777654 45556666543
No 266
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=33.46 E-value=58 Score=27.07 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=21.8
Q ss_pred cCCCChHHHHHHHHHHHHHhhhCCCc
Q 008746 144 LKDNNSYVRTVAVIGVLKLYHISAPT 169 (555)
Q Consensus 144 l~d~~~~VRk~A~lal~kl~~~~p~~ 169 (555)
+.|.+||+|-.|+.|+-.+..-+|+-
T Consensus 39 iD~~nP~irEwai~aiRnL~e~n~eN 64 (102)
T PF09759_consen 39 IDDHNPFIREWAIFAIRNLCEGNPEN 64 (102)
T ss_pred CCcccHHHHHHHHHHHHHHHhCCHHH
Confidence 45679999999999999998776654
No 267
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=33.44 E-value=56 Score=29.90 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=44.5
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 008746 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 146 d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~ 207 (555)
|.--.+||.|.-|+..+....++.+.-.++.+.+..- ++| ++.+..-+...+..+....|
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~G-L~D-~~DIk~L~~~~l~kl~~~~p 97 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAG-LKD-EHDIKMLCHLMLSKLAQLAP 97 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHT-TSS--HHHHHHHHHHHHHHHHS-H
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhh-cCC-cHHHHHHHHHHHHHHHHhCH
Confidence 3456899999999999998777766435677777777 588 88888888888888766544
No 268
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=33.17 E-value=4.3e+02 Score=29.75 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=45.9
Q ss_pred cCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 008746 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (555)
Q Consensus 144 l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~ 203 (555)
..++++.+|+.+..-+.++....|+.. =...+..+|.+.+.+++.+.++..+-+..
T Consensus 451 ~~~p~~~lR~~~~~ll~~iL~~~p~~~----rf~~i~dlLe~c~~~~~k~~~I~~lKd~i 506 (633)
T PF08568_consen 451 VYCPSPELRKIAFTLLTRILHLFPEET----RFKFIRDLLENCPFESLKASAIGWLKDEI 506 (633)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHCCcHh----HHHHHHHHHhcCCCHhHHHHHHHHHHHHH
Confidence 578899999999999999998888843 45667777667899999999998887654
No 269
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=33.17 E-value=1.8e+02 Score=23.48 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCcc--cCCCchHHHHHHHhc-CCChHHHHHHHHHHHHHHh
Q 008746 146 DNNSYVRTVAVIGVLKLYHISAPTC--IDADFPPTLKHLMLN-DPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 146 d~~~~VRk~A~lal~kl~~~~p~~~--~~~~~~~~l~~lll~-d~d~~V~~~a~~~L~~i~~ 204 (555)
+.+-.+|..|+..+..+++.+.+.. ..+.+...+.+.+.+ ++.....-.|+..|.++.+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4577999999999999998876654 113445555555332 3566788889999988854
No 270
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.11 E-value=1.4e+02 Score=31.07 Aligned_cols=62 Identities=23% Similarity=0.180 Sum_probs=46.8
Q ss_pred hhccCCCChHHHHHHHHHHHHHhhhCCCccc--CCCchHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 008746 141 GLGLKDNNSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (555)
Q Consensus 141 ~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~--~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~ 203 (555)
..-+.|.|.-||+.|...+..++..+|+... -..+...+..+ ..|.|..|+.....++..+.
T Consensus 64 l~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~-i~D~~~~vR~~~~qll~~~i 127 (393)
T KOG2149|consen 64 LSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLREL-ILDDDSLVRDALYQLLDSLI 127 (393)
T ss_pred HhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhh-hcCccccHHHHHHHHHHHHH
Confidence 3557899999999999999999887777541 12344556665 57889999999998887743
No 271
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=32.95 E-value=3.3e+02 Score=23.62 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 154 ~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
...+.++=+.+..++.. .+.+..|.+. +..+||.|...|+.+|..+.+.
T Consensus 19 ~~~l~icD~i~~~~~~~--k~a~r~l~kr-l~~~n~~v~l~AL~lLe~~vkN 67 (133)
T smart00288 19 ELILEICDLINSTPDGP--KDAVRLLKKR-LNNKNPHVALLALTLLDACVKN 67 (133)
T ss_pred HHHHHHHHHHhCCCccH--HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHH
Confidence 34445555555454432 4566777787 5889999999999998888765
No 272
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=32.77 E-value=3.4e+02 Score=23.84 Aligned_cols=79 Identities=9% Similarity=0.003 Sum_probs=48.4
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhHcC-CCChHHHHHHHHHhcCC----Ch---hhhH-HHHHHH-HhhccCC---CChH
Q 008746 84 YLYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSL----RV---ANLV-EYLVGP-LGLGLKD---NNSY 150 (555)
Q Consensus 84 yl~l~~~~~~~~e~~~l~in~l~kDL~-~~n~~vr~lAL~~L~~i----~~---~ei~-~~l~~~-i~~~l~d---~~~~ 150 (555)
.+-+.-....+++..--++.+++|-++ ++|+.+.-.||..|-.+ |. .+++ ..++.. +.+.+.. .+..
T Consensus 22 ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~ 101 (141)
T cd03565 22 NMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTI 101 (141)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHH
Confidence 334444444455556688899999998 47999888888876554 22 2332 344444 5566553 3457
Q ss_pred HHHHHHHHHHHH
Q 008746 151 VRTVAVIGVLKL 162 (555)
Q Consensus 151 VRk~A~lal~kl 162 (555)
||++.+.-+..-
T Consensus 102 Vk~kil~li~~W 113 (141)
T cd03565 102 VQEKVLALIQAW 113 (141)
T ss_pred HHHHHHHHHHHH
Confidence 888776554444
No 273
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.88 E-value=3.5e+02 Score=32.11 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=60.1
Q ss_pred hhHHHHHHHHhhc-----cCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 131 NLVEYLVGPLGLG-----LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 131 ei~~~l~~~i~~~-----l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
+-++.++..+-+. ..|-.|.+|--++..++--.+.+|+.+....+++.+ .+.++|.+..|+...+.+|..+..+
T Consensus 278 d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYi-GWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 278 DEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYI-GWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred HHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHh-cceeecCccHHHHHHHHHHHHHHhc
Confidence 3344444444443 357899999999999999999999998777777777 5568999999999999999999876
Q ss_pred cc
Q 008746 206 EA 207 (555)
Q Consensus 206 ~~ 207 (555)
+.
T Consensus 357 ~~ 358 (1048)
T KOG2011|consen 357 DE 358 (1048)
T ss_pred cc
Confidence 43
No 274
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=29.49 E-value=4.6e+02 Score=24.28 Aligned_cols=98 Identities=20% Similarity=0.254 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHH
Q 008746 42 DSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLAL 121 (555)
Q Consensus 42 ~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL 121 (555)
..-++.+.+-=+.... +.+..++.+...+.=++....+-.|-.+..-...+|+-++ .-|..... |+.||.-|+
T Consensus 25 ~eek~llW~~R~~~l~--~~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL---~LL~~~~~--~~~Vr~yAV 97 (184)
T smart00145 25 AEEKDLIWKFRHYYLT--NNPKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDAL---ELLSPKFP--DPFVRAYAV 97 (184)
T ss_pred HHHHHHHHHChHHHHh--cChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHH---HHhCccCC--CHHHHHHHH
Confidence 3445555454322221 2233355555555556666555666666665555555443 45555444 789999999
Q ss_pred HHhcCCChhhhHHHHHHHHhhccCCC
Q 008746 122 RSLCSLRVANLVEYLVGPLGLGLKDN 147 (555)
Q Consensus 122 ~~L~~i~~~ei~~~l~~~i~~~l~d~ 147 (555)
+.|.+..+.++.- .+|.+.+++...
T Consensus 98 ~~L~~~~d~~l~~-yLpQLVQaLr~E 122 (184)
T smart00145 98 ERLESASDEELLL-YLLQLVQALKYE 122 (184)
T ss_pred HHHHhCCHHHHHH-HHHHHHHHHHcc
Confidence 9999988777654 455666666543
No 275
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=29.33 E-value=3.4e+02 Score=24.51 Aligned_cols=42 Identities=5% Similarity=0.087 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 008746 354 VKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVG 398 (555)
Q Consensus 354 Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~ 398 (555)
=|...|+.+..+...++++..++.+... .|..+..+++..+.
T Consensus 13 ~R~~~L~~v~~~W~~~~~k~ai~~~~~~---~D~svlvD~L~vl~ 54 (164)
T PF13925_consen 13 SRLTNLQVVRTFWRRNDIKGAIEYAVRM---NDPSVLVDVLSVLN 54 (164)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHhc---CCchHHHHHHHHHH
Confidence 3788899999988888888887765444 56677777776664
No 276
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=28.75 E-value=3.5e+02 Score=28.22 Aligned_cols=95 Identities=14% Similarity=0.037 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCccc----CCCchHHHHHHHhcCC
Q 008746 112 EDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI----DADFPPTLKHLMLNDP 187 (555)
Q Consensus 112 ~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~----~~~~~~~l~~lll~d~ 187 (555)
.|+...--+...+++ +++.....+..|.+.++|.+|+|---|+.-+..+...+...+. -.+|...+..++.+..
T Consensus 24 enW~~IlDvCD~v~~--~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~ 101 (462)
T KOG2199|consen 24 ENWSLILDVCDKVGS--DPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKA 101 (462)
T ss_pred ccHHHHHHHHHhhcC--CCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcc
Confidence 345444444444443 4688888999999999999999999888877777776665541 1578899998843356
Q ss_pred ChHHHHHHHHH---HHHHHhhccc
Q 008746 188 DPQVVANCLSA---LQEIWSLEAS 208 (555)
Q Consensus 188 d~~V~~~a~~~---L~~i~~~~~~ 208 (555)
.+.|....-.+ +.+.++.+|.
T Consensus 102 h~kV~~k~~~lv~eWsee~K~Dp~ 125 (462)
T KOG2199|consen 102 HPKVCEKMRDLVKEWSEEFKKDPS 125 (462)
T ss_pred cHHHHHHHHHHHHHHHHHhccCcc
Confidence 67665443333 3344555553
No 277
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=28.33 E-value=99 Score=23.96 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhhCC--CcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 152 RTVAVIGVLKLYHISA--PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 152 Rk~A~lal~kl~~~~p--~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
.|.|..|++++-.... ..+.+.++++.+.++..+.+..+|+..|+.+|.-++..
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 4778888888764221 12233578888888766778899999999999988764
No 278
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.85 E-value=8e+02 Score=26.53 Aligned_cols=130 Identities=20% Similarity=0.235 Sum_probs=79.4
Q ss_pred hhcCCCCchhHHHHHHHHHHhcCCCChHH----HHHHHHHHhHcC-CCChHHHHHHHHHhcCCCh----hhh---HHHHH
Q 008746 70 MCSATSDIVLKKMCYLYVGNYAKVNPDLA----LLTINFLQRDCK-DEDPMIRGLALRSLCSLRV----ANL---VEYLV 137 (555)
Q Consensus 70 ~~~~s~~~~~Krl~yl~l~~~~~~~~e~~----~l~in~l~kDL~-~~n~~vr~lAL~~L~~i~~----~ei---~~~l~ 137 (555)
+-..+++-..|+++.-.+...+..-|+-. ...+-.+...|- +.|..|...|+.+|..+.. .++ .-.+.
T Consensus 265 ~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ia 344 (533)
T KOG2032|consen 265 NKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIA 344 (533)
T ss_pred HhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHH
Confidence 33445666889999888888877766631 122344555554 4568899999988887622 222 22233
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHH----HHH--hcCCChHHHHHHHHHHH
Q 008746 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK----HLM--LNDPDPQVVANCLSALQ 200 (555)
Q Consensus 138 ~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~----~ll--l~d~d~~V~~~a~~~L~ 200 (555)
-.++....|.++-+|-+|....+.+.+....-. +..|.+.++ .++ +.|++|-|..+.=..+.
T Consensus 345 lrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~-e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 345 LRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGW-EEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR 412 (533)
T ss_pred HHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCc-hhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence 445566788999999999888887766443322 123443333 221 47889976655444443
No 279
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=27.83 E-value=5.8e+02 Score=24.93 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=65.6
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHHhhccc--------chhHHHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCCchHH
Q 008746 393 SIRAVGKIALQQYDVNAIVDRLLQFLEMEK--------DYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKA 464 (555)
Q Consensus 393 ~i~~i~~la~~~~~~~~~i~~ll~ll~~~~--------~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~~~~~ 464 (555)
.+-++..+|+.-. ...++.++++++..+ +.+.++....+..+.... +..+.+++.+.--+.=+
T Consensus 59 ~~~a~~LLaq~re--~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G~-------~~~L~~li~~~~~~~yv 129 (249)
T PF06685_consen 59 HFYALYLLAQFRE--ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDGD-------IEPLKELIEDPDADEYV 129 (249)
T ss_pred HHHHHHHHHHHhh--hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCCC-------HHHHHHHHhCCcHHHHH
Confidence 4666666675422 235677788776543 334444433333332211 12355554222223344
Q ss_pred HHHHHHHHhccccCCC----ChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhccCCC
Q 008746 465 KAALIWMLGEYSQDMQ----DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFH 536 (555)
Q Consensus 465 ~~~~~wiiGEy~~~~~----~~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~~~~~d~d 536 (555)
|.+++-.++.-...-+ .....++.+.+.+.......+-..++..++-+ +|.+..+.+++++....-|..
T Consensus 130 R~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL---~~~EL~~~I~~~f~~~lVd~~ 202 (249)
T PF06685_consen 130 RMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDL---YPEELLPEIRKAFEDGLVDPS 202 (249)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhc---CHHHhHHHHHHHHHcCCCCcc
Confidence 5544433332222222 24455666666655544244455555555544 455777778877776665543
No 280
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=27.80 E-value=8.4e+02 Score=27.76 Aligned_cols=80 Identities=21% Similarity=0.157 Sum_probs=51.5
Q ss_pred CCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCCh-----h-HHHHHHH
Q 008746 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSE-----W-AQCLVLE 246 (555)
Q Consensus 173 ~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~p-----w-~q~~iL~ 246 (555)
+.-.+.+.++ +...|..|+.++..+|..+..+ + ....++.+..+++|++.|.+..+ | ..+.++.
T Consensus 565 ekgl~~l~~l-l~~~~~~vv~s~a~~LrNls~d-~--------rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~ 634 (717)
T KOG1048|consen 565 EKGLPPLVEL-LRNDDSDVVRSAAGALRNLSRD-I--------RNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCH 634 (717)
T ss_pred ccCccHHHHH-HhcCCchHHHHHHHHHhhhccC-c--------hhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHH
Confidence 4556777787 4666777888888888887542 1 12344556678889998877655 3 4556666
Q ss_pred HHHccCCCChhHHHHH
Q 008746 247 LVAKYVPLDSNEIFDI 262 (555)
Q Consensus 247 ~L~~~~~~~~~~~~~i 262 (555)
.|..+...+...+.++
T Consensus 635 tl~niv~~~~~nAkdl 650 (717)
T KOG1048|consen 635 TLNNIVRKNVLNAKDL 650 (717)
T ss_pred hHHHHHHHhHHHHHHH
Confidence 7766665555544443
No 281
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.31 E-value=7e+02 Score=25.68 Aligned_cols=297 Identities=17% Similarity=0.195 Sum_probs=149.4
Q ss_pred HHHHHhHcCCCChHHHHHHHHHhcCCCh--hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHH
Q 008746 102 INFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (555)
Q Consensus 102 in~l~kDL~~~n~~vr~lAL~~L~~i~~--~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l 179 (555)
+..+.+.|.+ +.-.++|-|+++.-.. +-++-.. .+-..++.-|=++++-++.++-...|+.+ +-+-...+
T Consensus 79 ~s~ll~~l~d--~ck~~~A~r~la~~~ga~~~~it~~-----~la~~~~~~~l~ksL~al~~lt~~qpdl~-da~g~~vv 150 (461)
T KOG4199|consen 79 TTELLEQLAD--ECKKSLAHRVLAGKNGAHDALITLL-----ELAESPNESVLKKSLEAINSLTHKQPDLF-DAEAMAVV 150 (461)
T ss_pred HHHHHHHHHH--HHhhhHHHHHHhccCCCcchhhhHH-----HHhhCCchhHHHHHHHHHHHhhcCCcchh-ccccHHHH
Confidence 3566666664 7788899999987432 2222221 23567788899999999999999999987 34555555
Q ss_pred HHHHh-cCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHcc-CCCCh-
Q 008746 180 KHLML-NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY-VPLDS- 256 (555)
Q Consensus 180 ~~lll-~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~-~~~~~- 256 (555)
.++|. +-.+..|..+.+..+..-+-.+. ..+++ ++-.+++.++... .....
T Consensus 151 v~lL~~~~~~~dlt~~~~~~v~~Ac~~hE-----------------~nrQ~---------~m~~~il~Li~~~l~~~gk~ 204 (461)
T KOG4199|consen 151 LKLLALKVESEEVTLLTLQWLQKACIMHE-----------------VNRQL---------FMELKILELILQVLNREGKT 204 (461)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHhH-----------------HHHHH---------HHHhhHHHHHHHHHcccCcc
Confidence 56531 22455566666555554332110 11111 1223333333321 11111
Q ss_pred hHHHHHHHHHHHHhccCchHHHHHH----HHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Q 008746 257 NEIFDIMNLLEDRLQHANGAVVLST----IKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (555)
Q Consensus 257 ~~~~~i~~~l~~~L~s~~~aV~~ea----i~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~ 332 (555)
+....+..++.-++-..+--|+|.. +|+|..... +.-+...+..++ +|++---..-.+..++-+
T Consensus 205 ~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~---------l~~L~Eal~A~~---dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 205 RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGI---------LTALTEALQAGI---DPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhh---------HHHHHHHHHccC---CccHHHHHHHHHHHHHHH
Confidence 2233344455545544444443322 233322110 111122222222 244333333333333222
Q ss_pred CCccccc-----ccce-eeeccC-CcH---HHHHHHHHHHHHccCCCCHH-HHHHH-----HHHHh--hcCCHHHHHHHH
Q 008746 333 APFIFAS-----DYKH-FYCQYN-EPS---YVKKLKLEMLTAVANESNTY-EIVTE-----LCEYA--ANVDIPIARESI 394 (555)
Q Consensus 333 ~p~~~~~-----~~~~-f~~~~~-dd~---~Ir~~aL~iL~~l~~~~N~~-~Iv~e-----L~~y~--~~~d~~~~~~~i 394 (555)
+ ++++. -++. |-|..| .+. ..-+..+.+|.+++..+.++ .||+. +...+ .+.||.+..++.
T Consensus 273 ~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 D-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred H-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 1 11111 1111 223322 233 34478888999988665554 45432 33222 234788889999
Q ss_pred HHHHHHhcccCc-HHHHH-----HHHHHHhhccc--chhHHHHHHHHHHHHHhCCCCcc
Q 008746 395 RAVGKIALQQYD-VNAIV-----DRLLQFLEMEK--DYVTAEALVLVKDLLRKYPQWSH 445 (555)
Q Consensus 395 ~~i~~la~~~~~-~~~~i-----~~ll~ll~~~~--~~v~~e~i~~i~~ii~~~~~~~~ 445 (555)
-.|+.++.+.|+ +..++ +..++-+.-.. ..+-.....++|+++.+..+.++
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~ 410 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRT 410 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 999999999987 33333 34444444321 23444455677888776655543
No 282
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=26.96 E-value=34 Score=28.56 Aligned_cols=24 Identities=33% Similarity=0.166 Sum_probs=16.7
Q ss_pred HHhhccCCCChHHHHHHHHHHHHH
Q 008746 139 PLGLGLKDNNSYVRTVAVIGVLKL 162 (555)
Q Consensus 139 ~i~~~l~d~~~~VRk~A~lal~kl 162 (555)
.+..++.|+++.||-.|+..++++
T Consensus 51 aLl~LL~hpn~~VRl~AA~~~L~~ 74 (106)
T PF09450_consen 51 ALLPLLKHPNMQVRLWAAAHTLRY 74 (106)
T ss_dssp GGGGGGGSS-HHHHHHHHHTTTTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHh
Confidence 445778888888888877766654
No 283
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=25.90 E-value=1.8e+02 Score=26.27 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=27.6
Q ss_pred CCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhh
Q 008746 93 VNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN 131 (555)
Q Consensus 93 ~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~e 131 (555)
..|++.-...+.++.+ .++.+|-.|+|+||-+|--+
T Consensus 7 ~yP~LL~~L~~iLk~e---~s~~iR~E~lr~lGilGALD 42 (160)
T PF11865_consen 7 DYPELLDILLNILKTE---QSQSIRREALRVLGILGALD 42 (160)
T ss_pred HhHHHHHHHHHHHHhC---CCHHHHHHHHHHhhhccccC
Confidence 3577766777888877 34999999999999987543
No 284
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=25.56 E-value=3.2e+02 Score=23.37 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCC----CChHHHH
Q 008746 43 SKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKD----EDPMIRG 118 (555)
Q Consensus 43 ~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~----~n~~vr~ 118 (555)
.|...+--.|+...-..+.+.++.+++++++++ ...-+..+.+...+-.++.+ .-..-|.
T Consensus 6 ~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~----------------~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~ 69 (148)
T PF08389_consen 6 NKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS----------------PQHLELVLRILRILPEEITDFRRSSLSQERR 69 (148)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT----------------HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHH
T ss_pred HHHHHHHHHHHHHHChhhCchHHHHHHHHhccc----------------hhHHHHHHHHHHHHHHHHHhhhchhhhHHHH
Q ss_pred HHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhh-hCCCcccCCCchHHHHHHHhcCCChHHHHHHHH
Q 008746 119 LALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH-ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLS 197 (555)
Q Consensus 119 lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~-~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~ 197 (555)
..++..-.-..+.+.+.+...+.......++.+.+++.-|+..... ..++.+...++++.+..+ +.+++. ..+|+.
T Consensus 70 ~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~-l~~~~~--~~~A~~ 146 (148)
T PF08389_consen 70 RELKDALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQL-LQSPEL--REAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHH-TTSCCC--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHH-cCCHHH--HHHHHH
Q ss_pred HH
Q 008746 198 AL 199 (555)
Q Consensus 198 ~L 199 (555)
.|
T Consensus 147 cl 148 (148)
T PF08389_consen 147 CL 148 (148)
T ss_dssp HH
T ss_pred hC
No 285
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=25.33 E-value=1.1e+02 Score=27.02 Aligned_cols=44 Identities=30% Similarity=0.317 Sum_probs=33.8
Q ss_pred HHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCC
Q 008746 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKD 146 (555)
Q Consensus 102 in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d 146 (555)
-+.+..-|.++++.++.+||.|+...+.|.+.+. -..+.+++.|
T Consensus 19 ~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY-~d~L~~Lldd 62 (141)
T PF07539_consen 19 YDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPY-KDNLENLLDD 62 (141)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhH-HHHHHHHcCc
Confidence 3566677788999999999999999888877665 4566666655
No 286
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=24.91 E-value=7.8e+02 Score=26.90 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=19.1
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHH
Q 008746 356 KLKLEMLTAVANESNTYEIVTELCE 380 (555)
Q Consensus 356 ~~aL~iL~~l~~~~N~~~Iv~eL~~ 380 (555)
++.+.=|..-+|.+|+..|+.||..
T Consensus 165 kksInglInkvn~sNi~~ii~eLfq 189 (739)
T KOG2140|consen 165 KKSINGLINKVNASNIQEIIRELFQ 189 (739)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHHHH
Confidence 4556666677788999999999864
No 287
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.11 E-value=1.2e+02 Score=32.72 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=41.9
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccc--------eeeeccC-CcHHHHHHHHHHHHHcc
Q 008746 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK--------HFYCQYN-EPSYVKKLKLEMLTAVA 366 (555)
Q Consensus 307 L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~--------~f~~~~~-dd~~Ir~~aL~iL~~l~ 366 (555)
|.+-++++.+.+++.||..|..++.+....|-.++- +-...+. .+..||.+.|.+|..|.
T Consensus 43 lkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 43 LKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 334466788899999999888888877665543331 1112344 67889999999999884
No 288
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=23.94 E-value=1.3e+02 Score=28.77 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=37.7
Q ss_pred hccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 008746 142 LGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 142 ~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~ 207 (555)
....+.++-.|+.|+.....-.+..+.. .++.+..... ++|+++.|.-+.-=+|-+++++.+
T Consensus 125 a~~~~~~~w~rraaiv~~l~~~k~~~~~---~~if~i~E~~-l~d~e~fV~KAigWaLrq~~k~~~ 186 (222)
T COG4912 125 ADAEEDNRWERRAAIVHQLVYKKKTLDL---LEIFEIIELL-LGDKEFFVQKAIGWALRQIGKHSN 186 (222)
T ss_pred hccccchHHHHHHHHHHHHHHhcCccch---hHHHHHHHHH-ccChHHHHHHHHHHHHHHHHhhch
Confidence 3345556666666666555544444432 4566666665 577777777777777777776444
No 289
>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [].
Probab=23.62 E-value=3.3e+02 Score=28.47 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=40.2
Q ss_pred hhcCCHHHHHHHHHHHHHHhcccCcH--HHHHHHHHHHhh----cccchhHHHHHHH--HHHHHHhCCC
Q 008746 382 AANVDIPIARESIRAVGKIALQQYDV--NAIVDRLLQFLE----MEKDYVTAEALVL--VKDLLRKYPQ 442 (555)
Q Consensus 382 ~~~~d~~~~~~~i~~i~~la~~~~~~--~~~i~~ll~ll~----~~~~~v~~e~i~~--i~~ii~~~~~ 442 (555)
+.+.|+|.|--++.+|..- .|||+. .|+...++.++. ...+...+|.|.+ +..++...|.
T Consensus 271 i~~ld~E~RY~ll~aiaNq-LRYPN~HT~~Fs~~lL~lF~~~~~~~~~~~IqEqItRVLLERliv~rPH 338 (379)
T PF04054_consen 271 IHELDPEGRYYLLSAIANQ-LRYPNSHTHFFSCVLLNLFSSDMNDPNDEDIQEQITRVLLERLIVNRPH 338 (379)
T ss_pred HHhCCHHHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHhcCCCCccchhhhHHHHHHHHHHHHhcCCCC
Confidence 5667889888888888443 389995 588899999998 3344555565543 3455555443
No 290
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=23.00 E-value=1.2e+02 Score=25.79 Aligned_cols=29 Identities=38% Similarity=0.472 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 008746 177 PTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (555)
Q Consensus 177 ~~l~~lll~d~d~~V~~~a~~~L~~i~~~~ 206 (555)
+.|.+- +.|+++.|+..|+.+|.+.+..+
T Consensus 11 ~lLv~Q-L~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 11 ELLVTQ-LYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHhch
Confidence 555566 59999999999999999987653
No 291
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.81 E-value=1.5e+03 Score=27.99 Aligned_cols=106 Identities=14% Similarity=0.078 Sum_probs=71.1
Q ss_pred CCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhh-------hHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhh
Q 008746 93 VNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-------LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI 165 (555)
Q Consensus 93 ~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~e-------i~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~ 165 (555)
.++|+ --+.|-|.-.|+..+.-||..++.+.++. +.+.....+.++..|.+..||...-..+.++...
T Consensus 39 ~dsel-----~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~ 113 (1312)
T KOG0803|consen 39 LDSEL-----DIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTK 113 (1312)
T ss_pred cCHHH-----HHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 45565 23445556668999999999999986533 3455566677889999999999888777777643
Q ss_pred CCCccc--CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 008746 166 SAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 166 ~p~~~~--~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~ 204 (555)
-...+. -..+++...-. ..|.+..|..+|...+.....
T Consensus 114 lkk~lsp~LK~li~~wl~~-~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 114 LKKKLSPFLKSLIPPWLGG-QFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HHHHhhHHHHhhhhhhhhe-ecccchHHHHHHHHHHHhhcC
Confidence 222110 02233333232 478999999999988888765
No 292
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=22.62 E-value=2.8e+02 Score=26.53 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=45.5
Q ss_pred hHcCCCChHHH-HHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc
Q 008746 107 RDCKDEDPMIR-GLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT 169 (555)
Q Consensus 107 kDL~~~n~~vr-~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~ 169 (555)
-|.++.|.-.| .+....+.-.........+.+.+...+.|+.++|||.-.-||-.+++..|+.
T Consensus 125 a~~~~~~~w~rraaiv~~l~~~k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~e~ 188 (222)
T COG4912 125 ADAEEDNRWERRAAIVHQLVYKKKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKHSNEL 188 (222)
T ss_pred hccccchHHHHHHHHHHHHHHhcCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhhchHH
Confidence 35556665544 4555556555555555568889999999999999999999999998855543
No 293
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=21.75 E-value=4e+02 Score=29.09 Aligned_cols=139 Identities=16% Similarity=0.092 Sum_probs=81.3
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc---ccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHh
Q 008746 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (555)
Q Consensus 137 ~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~---~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~ 213 (555)
...+.++|++|.-.|.-.+..+++...-....+ +....+++.+..+ ...+|...+++..-++..+.-....
T Consensus 433 ~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~-v~sKDdaLqans~wvlrHlmyncq~----- 506 (743)
T COG5369 433 VELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL-VMSKDDALQANSEWVLRHLMYNCQK----- 506 (743)
T ss_pred HHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH-hhcchhhhhhcchhhhhhhhhcCcc-----
Confidence 344557788887777777777777654322221 2346788888887 4667777777777666655321110
Q ss_pred hhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChh-H-H----------HHHHHHHHHHhccCchHHHHHH
Q 008746 214 SREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN-E-I----------FDIMNLLEDRLQHANGAVVLST 281 (555)
Q Consensus 214 ~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~-~-~----------~~i~~~l~~~L~s~~~aV~~ea 281 (555)
.....++.+--+.+++.-.++++--.|..++++|+.+.-++.. | . .-+-..+...+...||.-..+.
T Consensus 507 -~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~ 585 (743)
T COG5369 507 -NEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEG 585 (743)
T ss_pred -hhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhh
Confidence 0012233332356666667778777899999999998643221 1 1 1133445555666666554444
Q ss_pred H
Q 008746 282 I 282 (555)
Q Consensus 282 i 282 (555)
+
T Consensus 586 ~ 586 (743)
T COG5369 586 C 586 (743)
T ss_pred H
Confidence 3
No 294
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=21.73 E-value=3e+02 Score=21.83 Aligned_cols=64 Identities=13% Similarity=0.211 Sum_probs=42.8
Q ss_pred HHHHHHhhcc-CCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHH--HhcCCChHHHHHHHHHH
Q 008746 135 YLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL--MLNDPDPQVVANCLSAL 199 (555)
Q Consensus 135 ~l~~~i~~~l-~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~l--ll~d~d~~V~~~a~~~L 199 (555)
.+..+....+ +.++..||...+.|+.++.....+.+ ..+|...+.-+ ..+|.+..+...|...+
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i-~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENI-KSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH-HhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3444444543 45689999999999999988776665 47777654433 14566777777776554
No 295
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=21.70 E-value=4.4e+02 Score=27.27 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhhccc
Q 008746 352 SYVKKLKLEMLTAVANESNTYEIVTELCEYAANVD-IPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEK 422 (555)
Q Consensus 352 ~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d-~~~~~~~i~~i~~la~~~~~~~~~i~~ll~ll~~~~ 422 (555)
.......++++-+--..+.+++|+++|.+|-.+.+ .++..+.++.| ...-|.+ +.+-++.+..+.
T Consensus 259 ~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L---~k~SPtS---LkvT~r~i~egs 324 (401)
T KOG1684|consen 259 SFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWAKETLKTL---KKMSPTS---LKVTLRQIREGS 324 (401)
T ss_pred cccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHH---hhcCCch---HHHHHHHHHhhh
Confidence 33445578888876677799999999999976433 46766666666 4444543 233344444443
No 296
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=21.37 E-value=1e+03 Score=25.49 Aligned_cols=382 Identities=14% Similarity=0.085 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHH
Q 008746 150 YVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYL 229 (555)
Q Consensus 150 ~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L 229 (555)
..|-+|+-.+....+.+|-.- .+++-...+.++..+..+.++.+++.++.++.+...... -..+ ..+.+.
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~-i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~---~~~R------~~fF~~ 74 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSS-IEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSS---GLMR------AEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchH-HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccccc---HHHH------HHHHHH
Confidence 456677777777666554321 144445666664344556789999999999987644210 0111 122222
Q ss_pred HhhcCCCCh-hHHHHHHHHHHccCCCChh---H-HHHHHHHHHHHh----------cc------C-------chHHHHHH
Q 008746 230 LNRIKEFSE-WAQCLVLELVAKYVPLDSN---E-IFDIMNLLEDRL----------QH------A-------NGAVVLST 281 (555)
Q Consensus 230 ~~~l~~~~p-w~q~~iL~~L~~~~~~~~~---~-~~~i~~~l~~~L----------~s------~-------~~aV~~ea 281 (555)
+..-...++ -.|...|..|+.-+++-.. + ..-+...+.+.. ++ . +..-....
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDL 154 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHH
Confidence 221111222 3788888888887654211 1 111122222222 00 0 11122222
Q ss_pred HHHH---HHhcCCcchhHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHhhC--CcccccccceeeeccCCcHHHH
Q 008746 282 IKVF---LHLTLSMTDVHQQVYERIKAPLLTLV-SSGSPEQSYAVLSHLHILVMRA--PFIFASDYKHFYCQYNEPSYVK 355 (555)
Q Consensus 282 i~~i---~~l~~~~~~~~~~~l~~i~~~L~~ll-~~~~~~~ry~aL~~l~~l~~~~--p~~~~~~~~~f~~~~~dd~~Ir 355 (555)
...+ +++.... +....+..+...+..+. +++.++.=...|..+..++..+ |.-.-+..-.+.|.-..-....
T Consensus 155 l~~l~nviKfn~~~--l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~ 232 (464)
T PF11864_consen 155 LQFLVNVIKFNFNY--LDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLC 232 (464)
T ss_pred HHHHHHHHhcCCCC--CCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccc
Confidence 2222 3332211 11122222333333332 2333333356677776666532 3211111112234322222566
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHhhcCC------HHHHHHHHHHHHHHhccc-----Cc--HHH--HHHHHHHHhhc
Q 008746 356 KLKLEMLTAVANESNTYEIVTELCEYAANVD------IPIARESIRAVGKIALQQ-----YD--VNA--IVDRLLQFLEM 420 (555)
Q Consensus 356 ~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d------~~~~~~~i~~i~~la~~~-----~~--~~~--~i~~ll~ll~~ 420 (555)
..+-+++..|+.+..-...+..|..++.+.+ ....+-+|.-++.+.-.. |. ..- .+..+..-+..
T Consensus 233 ~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~ 312 (464)
T PF11864_consen 233 KPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKS 312 (464)
T ss_pred hhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhC
Confidence 7788899999999988888999999884332 334456777777765443 33 122 67778888877
Q ss_pred ccchhHHHHHHHHHHHH-HhCCCC-cc----hHHHHHhhhcc--cCCC--c------hHHHHHH------HHHHhccccC
Q 008746 421 EKDYVTAEALVLVKDLL-RKYPQW-SH----DCIAVVGSISS--QNVQ--E------PKAKAAL------IWMLGEYSQD 478 (555)
Q Consensus 421 ~~~~v~~e~i~~i~~ii-~~~~~~-~~----~~~~~l~~l~~--~~~~--~------~~~~~~~------~wiiGEy~~~ 478 (555)
++.-+..|++..+..++ .++... .+ ....++.++.. .... . +...... +.-+=|-++.
T Consensus 313 ~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~ 392 (464)
T PF11864_consen 313 NSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDF 392 (464)
T ss_pred CCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCc
Confidence 77778889988888888 443321 11 12333333320 1111 1 1122111 1112111111
Q ss_pred CCChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHhc-cCCCcchhhccccc
Q 008746 479 MQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP--ETQKVLGAALAAGL-ADFHQVVFYGFFPP 546 (555)
Q Consensus 479 ~~~~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~--~~~~~l~~vl~~~~-~d~d~evq~Ra~~~ 546 (555)
.....++++.+.+....-+ +..-..++ ..+.-...|. +-.+.+..+++.+- .+.+++||-+|.+-
T Consensus 393 ~g~~~~~~~f~~~~~~~lp-~s~~~~vl--~~~~~~~~Ps~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~ 460 (464)
T PF11864_consen 393 NGPKDKLFNFFERVHSYLP-DSSALLVL--FYEERSCSPSNPDWLDNLQKLLDRFYNRDRRSEVRIKALDV 460 (464)
T ss_pred CccHHHHHHHHHHHhccCC-HHHHHHHH--HHHhcccCCCChHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 1124455665555554444 33333333 3333334442 22555677777776 56788999888654
No 297
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.31 E-value=5.3e+02 Score=30.25 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=54.4
Q ss_pred hhHHHHHHHHhhccCCCChHHHHHHHHHHHHHh---hhCCCccc---CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 008746 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLY---HISAPTCI---DADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 131 ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~---~~~p~~~~---~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~ 204 (555)
+|+..+....+..++|++-.+|=+|..++.-.. ..+++.+. ...|...+.. +.++||.++..|+..+..++.
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~--~~~k~~L~v~~a~~~i~~m~~ 876 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIEC--LLCKDPLIVQRAFSCIEQMGK 876 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHH--HhcCchHHHHHHHHHHHHHHH
Confidence 367777788888899999999999988876543 34454431 1346666666 367799999999999998876
Q ss_pred h
Q 008746 205 L 205 (555)
Q Consensus 205 ~ 205 (555)
.
T Consensus 877 ~ 877 (1014)
T KOG4524|consen 877 Y 877 (1014)
T ss_pred H
Confidence 5
No 298
>COG4335 DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=20.76 E-value=1.4e+02 Score=26.50 Aligned_cols=89 Identities=11% Similarity=0.055 Sum_probs=49.6
Q ss_pred chhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhh---------HHHHHHHHhhccCCC
Q 008746 77 IVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANL---------VEYLVGPLGLGLKDN 147 (555)
Q Consensus 77 ~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei---------~~~l~~~i~~~l~d~ 147 (555)
++.+-..-.....+...+++..+ ..+..--.+.|+.+|.+|=.+. .++-|.- ...+.+.+..+-.|+
T Consensus 19 ~t~rgtse~~~rpll~~~~eat~---a~l~~wSe~~ne~vrrLssec~-r~rlPws~~L~~~~~~~~~~~~il~al~adK 94 (167)
T COG4335 19 FTMRGTSEFASRPLLPKDAEATF---APLLRWSEHQNEHVRRLSSECT-RPRLPWSKLLLKLQKDPSPVNMILTALKADK 94 (167)
T ss_pred HHHHhhHHHHHhccCCCCHHHHH---HHHhhhccCccHHHHHHHhccc-CCCCchHHHHHHHhhcCcchhHHHHhhHhHH
Confidence 44555555555556666666533 3344455788999998886554 3333321 111222333444566
Q ss_pred ChHHHHHHHHHHHHHhhhCCCc
Q 008746 148 NSYVRTVAVIGVLKLYHISAPT 169 (555)
Q Consensus 148 ~~~VRk~A~lal~kl~~~~p~~ 169 (555)
+-||||+.+--+-.+++..|+.
T Consensus 95 ~lyvrksvan~lndi~k~hp~f 116 (167)
T COG4335 95 ELYVRKSVANNLNDIKKVHPSF 116 (167)
T ss_pred HHHHHHHHHHHHHHhhhcChHH
Confidence 6777777776666666666553
No 299
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=20.68 E-value=1.7e+03 Score=27.88 Aligned_cols=194 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc
Q 008746 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (555)
Q Consensus 130 ~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~ 209 (555)
.+..+.+......++..+++.|+..+...-..+|....+.. +.+.+..|... ..+++..-+.+|+.+|.++...++
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~-qqeVv~~Lvth-i~sg~~~ev~~aL~vL~~L~~~~~-- 505 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC-QQEVVGALVTH-IGSGNSQEVDAALDVLCELAEKNP-- 505 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH-HHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHH-H--
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhccH--
Q ss_pred chHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccC----CCChhHHHHHHHHHHHHhccCchHH----HHHH
Q 008746 210 SEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV----PLDSNEIFDIMNLLEDRLQHANGAV----VLST 281 (555)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~----~~~~~~~~~i~~~l~~~L~s~~~aV----~~ea 281 (555)
-...-....+..+++.+...++--.-++.++|.... ........++--.+...|.+.+.-. +..|
T Consensus 506 -------~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGa 578 (1426)
T PF14631_consen 506 -------SELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGA 578 (1426)
T ss_dssp -------HHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHH
Q ss_pred HHHHHHhcCCcchhHH----------HHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHhhCC
Q 008746 282 IKVFLHLTLSMTDVHQ----------QVYERIKAPLLTLVS--SGSPEQSYAVLSHLHILVMRAP 334 (555)
Q Consensus 282 i~~i~~l~~~~~~~~~----------~~l~~i~~~L~~ll~--~~~~~~ry~aL~~l~~l~~~~p 334 (555)
+..+..+......-.. +....+...|..+.+ ...|+..-+-.+-|..++...+
T Consensus 579 v~~i~~la~~~~~~~~~~~~~~~l~~~~~~q~~~Ll~l~~ss~~~sp~~~ALfYDELA~li~~~~ 643 (1426)
T PF14631_consen 579 VMMIKHLAAKNSESDSSSSERSNLSDEQCKQATSLLELVQSSSEQSPEALALFYDELANLIQSRK 643 (1426)
T ss_dssp HHHHHHTT------------------HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhccCCccccccccCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC
No 300
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=20.53 E-value=3.6e+02 Score=24.83 Aligned_cols=58 Identities=28% Similarity=0.408 Sum_probs=36.1
Q ss_pred cCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccC-CCChHHHH
Q 008746 91 AKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLK-DNNSYVRT 153 (555)
Q Consensus 91 ~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~-d~~~~VRk 153 (555)
...+|..++ .-|..... ++|.||.-|+++|-+..+.++.-. +|.+.++|. |...+|++
T Consensus 66 ~pi~p~~AL---ell~~~y~-~~~~Vr~yAvr~L~~~~~e~l~~Y-lpQLVQaLryd~~~~l~~ 124 (175)
T cd00871 66 APVSPVQAL---SLFTPQYP-GHPLVLQYAVRVLESYPVETVFFY-IPQIVQALRYDKMGYVEE 124 (175)
T ss_pred CCCCHHHHH---HHhCcccC-CCHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHhccccchHHH
Confidence 334554433 44444433 479999999999999888777654 455556655 44444443
No 301
>PF05536 Neurochondrin: Neurochondrin
Probab=20.22 E-value=1.2e+03 Score=25.75 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=80.5
Q ss_pred HhcCCCchhHHHHHHHHHHHHhhCCcc-------cc----cccceeee---cc--CCcHHHHHHHHHHHHHccCCCCHH-
Q 008746 310 LVSSGSPEQSYAVLSHLHILVMRAPFI-------FA----SDYKHFYC---QY--NEPSYVKKLKLEMLTAVANESNTY- 372 (555)
Q Consensus 310 ll~~~~~~~ry~aL~~l~~l~~~~p~~-------~~----~~~~~f~~---~~--~dd~~Ir~~aL~iL~~l~~~~N~~- 372 (555)
+|.+.+.+-|++||-.+.+++...+.. +. +++..+.- .+ .++...+..++.+|...|.+.++.
T Consensus 13 lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~ 92 (543)
T PF05536_consen 13 LLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELAS 92 (543)
T ss_pred HhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhc
Confidence 455566777888887777776654421 10 01111110 01 156888999999999999887763
Q ss_pred -----HHHHHHHHHhhcCCH-HHHHHHHHHHHHHhcccCcH-HH-----HHHHHHHHhhcccchhHHHHHHHHHHHHHh
Q 008746 373 -----EIVTELCEYAANVDI-PIARESIRAVGKIALQQYDV-NA-----IVDRLLQFLEMEKDYVTAEALVLVKDLLRK 439 (555)
Q Consensus 373 -----~Iv~eL~~y~~~~d~-~~~~~~i~~i~~la~~~~~~-~~-----~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~ 439 (555)
.-++-|.+.+.+.+. +...++...+..++ .+|+. .. .+..+.+.+.++ ....+.++..+..++..
T Consensus 93 ~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~-~~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 93 SPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQ-SFQMEIALNLLLNLLSR 169 (543)
T ss_pred CHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhC-cchHHHHHHHHHHHHHh
Confidence 345556677777766 88899999998888 55542 21 356677776663 45555566666555554
No 302
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=20.00 E-value=6.3e+02 Score=22.51 Aligned_cols=98 Identities=22% Similarity=0.273 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHH
Q 008746 41 DDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLA 120 (555)
Q Consensus 41 ~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lA 120 (555)
.+..++.+.+.-+.... . +..++.++..+.-.+....+-.|-.+..-...+|+.++ .-|..... |+.||.-|
T Consensus 20 ~~~ek~llw~~R~~~~~-~--p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL---~LL~~~~~--~~~vr~yA 91 (152)
T cd00864 20 TEEEKELLWKFRYYLLN-V--PKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDAL---ELLSPKYP--DPVVRQYA 91 (152)
T ss_pred CHHHHHHHHHHHHHHhh-C--hHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHH---HHcCCcCC--CHHHHHHH
Confidence 45666777665554432 2 23466666766667777766667666665555665443 44444444 49999999
Q ss_pred HHHhcCCChhhhHHHHHHHHhhccCCC
Q 008746 121 LRSLCSLRVANLVEYLVGPLGLGLKDN 147 (555)
Q Consensus 121 L~~L~~i~~~ei~~~l~~~i~~~l~d~ 147 (555)
++.|.+..+.++.- .+|.+.+++...
T Consensus 92 v~~L~~~~~~~l~~-ylpQLVQaLkye 117 (152)
T cd00864 92 VRVLESASDDELLL-YLPQLVQALKYE 117 (152)
T ss_pred HHHHHhCCHHHHHH-HHHHHHHHHhcc
Confidence 99999988877654 456666666543
Done!