Query 008746
Match_columns 555
No_of_seqs 165 out of 1481
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 10:45:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_B AP-2 complex subunit be 100.0 6.3E-78 2.1E-82 664.3 50.1 522 11-550 4-530 (591)
2 2vgl_A Adaptor protein complex 100.0 8.6E-79 3E-83 672.0 38.5 512 17-549 32-586 (621)
3 1w63_A Adapter-related protein 100.0 2.4E-74 8.1E-79 638.2 36.8 508 18-549 32-574 (618)
4 3tjz_B Coatomer subunit gamma; 100.0 8.3E-50 2.8E-54 405.2 17.4 305 40-368 40-354 (355)
5 1b3u_A Protein (protein phosph 99.8 2.1E-17 7.1E-22 180.6 25.5 471 64-548 88-583 (588)
6 1b3u_A Protein (protein phosph 99.7 5.3E-16 1.8E-20 169.4 25.4 427 68-512 131-585 (588)
7 4fdd_A Transportin-1; heat rep 99.7 2.7E-13 9.2E-18 155.3 39.0 520 21-548 87-780 (852)
8 4fdd_A Transportin-1; heat rep 99.6 8E-14 2.7E-18 159.6 32.3 405 93-514 7-471 (852)
9 1w63_A Adapter-related protein 99.6 5.5E-14 1.9E-18 155.1 29.3 449 48-517 86-579 (618)
10 2vgl_B AP-2 complex subunit be 99.6 5E-15 1.7E-19 162.7 17.9 411 103-543 16-448 (591)
11 1u6g_C TIP120 protein, CAND1; 99.6 1.3E-12 4.4E-17 155.4 31.9 476 62-548 5-594 (1230)
12 4b8j_A Importin subunit alpha- 99.5 1.2E-11 4.1E-16 133.7 28.9 338 65-439 76-444 (528)
13 2bpt_A Importin beta-1 subunit 99.5 1.9E-10 6.5E-15 131.2 40.3 516 22-547 93-706 (861)
14 1oyz_A Hypothetical protein YI 99.5 8.4E-13 2.9E-17 130.6 18.0 195 101-328 24-218 (280)
15 1wa5_B Importin alpha subunit; 99.5 7.6E-12 2.6E-16 135.4 26.8 339 62-438 86-457 (530)
16 2jdq_A Importin alpha-1 subuni 99.5 5.7E-12 2E-16 132.7 25.2 330 65-402 22-390 (450)
17 1wa5_B Importin alpha subunit; 99.5 9.7E-12 3.3E-16 134.5 26.5 287 39-333 99-414 (530)
18 2jdq_A Importin alpha-1 subuni 99.5 4E-11 1.4E-15 126.2 30.1 321 39-367 32-390 (450)
19 1qgr_A Protein (importin beta 99.4 8.4E-10 2.9E-14 126.1 41.8 490 21-517 87-725 (876)
20 2z6g_A B-catenin; FULL-length, 99.4 8.5E-12 2.9E-16 141.2 24.0 467 65-547 117-658 (780)
21 2bpt_A Importin beta-1 subunit 99.4 4.4E-10 1.5E-14 128.2 37.6 433 73-519 15-534 (861)
22 1u6g_C TIP120 protein, CAND1; 99.4 4.7E-11 1.6E-15 142.0 30.3 462 39-516 18-600 (1230)
23 2z6g_A B-catenin; FULL-length, 99.4 5E-11 1.7E-15 134.9 28.9 433 102-546 117-616 (780)
24 4b8j_A Importin subunit alpha- 99.4 1.8E-10 6E-15 124.4 30.0 285 39-332 86-401 (528)
25 2z6h_A Catenin beta-1, beta-ca 99.4 1.3E-10 4.5E-15 128.7 27.6 433 100-547 14-522 (644)
26 1jdh_A Beta-catenin; beta-cate 99.4 1.5E-10 5.2E-15 124.5 27.4 436 95-546 12-524 (529)
27 1ibr_B P95, importin beta-1 su 99.3 2.7E-10 9.3E-15 120.0 27.5 190 130-367 85-288 (462)
28 1qgr_A Protein (importin beta 99.3 9.9E-10 3.4E-14 125.5 33.4 436 66-519 4-542 (876)
29 3ltm_A Alpha-REP4; protein eng 99.3 6.3E-11 2.2E-15 111.8 18.6 185 102-333 21-205 (211)
30 1oyz_A Hypothetical protein YI 99.3 1.4E-10 4.9E-15 114.4 21.5 222 65-329 25-248 (280)
31 3now_A UNC-45 protein, SD10334 99.3 1.1E-09 3.8E-14 122.2 30.0 401 65-477 248-737 (810)
32 2vgl_A Adaptor protein complex 99.3 2.5E-09 8.7E-14 117.6 32.6 368 78-474 58-471 (621)
33 3ltj_A Alpharep-4; protein eng 99.3 1.3E-10 4.5E-15 108.7 18.9 182 101-329 15-196 (201)
34 1jdh_A Beta-catenin; beta-cate 99.3 1.5E-09 5.2E-14 116.6 28.3 434 64-512 18-528 (529)
35 3ul1_B Importin subunit alpha- 99.3 1.7E-09 5.9E-14 116.3 27.4 296 136-439 101-431 (510)
36 3ltm_A Alpha-REP4; protein eng 99.2 7.8E-10 2.7E-14 104.2 19.4 186 63-291 19-204 (211)
37 2z6h_A Catenin beta-1, beta-ca 99.2 3.3E-08 1.1E-12 109.4 35.4 437 65-517 16-530 (644)
38 3ltj_A Alpharep-4; protein eng 99.2 9.5E-10 3.2E-14 102.8 19.3 183 64-289 15-197 (201)
39 3tpo_A Importin subunit alpha- 99.2 3.5E-09 1.2E-13 114.4 25.5 330 102-439 78-450 (529)
40 3ul1_B Importin subunit alpha- 99.2 1.5E-08 5E-13 109.0 30.3 329 65-401 59-429 (510)
41 4hxt_A De novo protein OR329; 99.2 2.7E-09 9.3E-14 102.7 21.7 227 102-336 4-246 (252)
42 3now_A UNC-45 protein, SD10334 99.1 5.4E-09 1.9E-13 116.6 24.9 397 39-440 259-739 (810)
43 3tpo_A Importin subunit alpha- 99.0 1.3E-07 4.3E-12 102.2 30.0 286 39-332 88-407 (529)
44 4db8_A Armadillo-repeat protei 99.0 4.1E-09 1.4E-13 101.8 14.8 220 62-289 11-250 (252)
45 1ibr_B P95, importin beta-1 su 99.0 3.8E-08 1.3E-12 103.5 23.2 240 39-288 13-286 (462)
46 4hxt_A De novo protein OR329; 99.0 2.7E-08 9.2E-13 95.6 19.4 218 65-290 4-241 (252)
47 4db8_A Armadillo-repeat protei 98.9 1.3E-08 4.3E-13 98.4 14.6 219 103-329 15-249 (252)
48 4db6_A Armadillo repeat protei 98.8 8.6E-08 2.9E-12 89.8 14.8 186 58-251 7-207 (210)
49 4ady_A RPN2, 26S proteasome re 98.7 9.4E-06 3.2E-10 91.1 31.8 339 44-420 339-699 (963)
50 3tjz_B Coatomer subunit gamma; 98.7 6.7E-07 2.3E-11 90.5 18.0 260 104-427 72-342 (355)
51 4db6_A Armadillo repeat protei 98.7 5.5E-07 1.9E-11 84.2 16.1 188 135-330 12-208 (210)
52 3b2a_A TON_1937, putative unch 98.7 2E-06 6.7E-11 80.0 18.9 191 174-378 33-229 (265)
53 1xm9_A Plakophilin 1; armadill 98.6 3.3E-06 1.1E-10 89.3 22.5 332 137-478 4-450 (457)
54 1te4_A Conserved protein MTH18 98.6 1.8E-08 6.3E-13 87.4 2.4 117 65-201 14-130 (131)
55 1te4_A Conserved protein MTH18 98.5 3.5E-08 1.2E-12 85.6 3.1 117 102-250 14-130 (131)
56 2qk2_A LP04448P; mini spindles 98.5 2.7E-06 9.3E-11 81.7 16.0 208 138-362 18-230 (242)
57 3l6x_A Catenin delta-1; cateni 98.5 3.2E-05 1.1E-09 83.4 24.9 332 137-477 50-476 (584)
58 1wa5_C Importin alpha RE-expor 98.5 0.00027 9.2E-09 81.6 34.4 346 134-514 84-525 (960)
59 2db0_A 253AA long hypothetical 98.4 2.3E-05 7.8E-10 69.9 18.9 209 103-331 35-246 (253)
60 1xm9_A Plakophilin 1; armadill 98.4 0.00022 7.5E-09 75.2 28.5 328 39-369 14-451 (457)
61 3opb_A SWI5-dependent HO expre 98.3 0.00047 1.6E-08 75.9 30.5 437 88-546 161-722 (778)
62 2qk2_A LP04448P; mini spindles 98.3 7.8E-06 2.7E-10 78.5 13.7 170 105-289 20-204 (242)
63 3nmz_A APC variant protein; pr 98.3 5.2E-05 1.8E-09 79.7 21.0 286 149-444 96-456 (458)
64 3nmw_A APC variant protein; AR 98.3 2.4E-05 8.2E-10 79.6 17.1 220 112-337 96-340 (354)
65 3l6x_A Catenin delta-1; cateni 98.2 0.00041 1.4E-08 74.8 26.0 354 14-376 42-485 (584)
66 2qk1_A Protein STU2; STU2P, XM 98.2 2.6E-05 8.7E-10 75.4 14.8 209 141-362 22-245 (249)
67 3nmz_A APC variant protein; pr 98.1 4.9E-05 1.7E-09 79.9 16.8 218 112-336 212-455 (458)
68 1xqr_A HSPBP1 protein; armadil 98.1 6.2E-05 2.1E-09 74.6 16.0 175 115-333 55-240 (296)
69 4ady_A RPN2, 26S proteasome re 98.1 0.00039 1.3E-08 78.2 24.0 305 60-401 389-720 (963)
70 1xqr_A HSPBP1 protein; armadil 98.1 6.7E-05 2.3E-09 74.3 15.2 170 78-256 55-241 (296)
71 3opb_A SWI5-dependent HO expre 98.0 0.031 1.1E-06 61.6 40.0 370 111-514 267-728 (778)
72 2x19_B Importin-13; nuclear tr 98.0 0.00082 2.8E-08 77.5 25.1 125 72-204 34-175 (963)
73 2qk1_A Protein STU2; STU2P, XM 98.0 0.00012 4.1E-09 70.6 14.8 136 70-206 23-177 (249)
74 2db0_A 253AA long hypothetical 97.9 0.00025 8.5E-09 63.4 14.4 92 311-402 153-246 (253)
75 2x1g_F Cadmus; transport prote 97.9 0.0032 1.1E-07 72.6 27.3 429 72-516 16-574 (971)
76 3b2a_A TON_1937, putative unch 97.9 0.00016 5.4E-09 67.3 12.5 178 135-332 33-219 (265)
77 1wa5_C Importin alpha RE-expor 97.7 0.0042 1.5E-07 71.6 23.6 259 78-342 376-680 (960)
78 3nmw_A APC variant protein; AR 97.6 0.0015 5E-08 66.3 17.0 210 76-293 97-337 (354)
79 2x1g_F Cadmus; transport prote 97.3 0.069 2.4E-06 61.4 27.3 171 150-334 436-618 (971)
80 4ffb_C Protein STU2; tubulin f 97.2 0.004 1.4E-07 60.7 14.0 175 70-291 16-213 (278)
81 3ibv_A Exportin-T; karyopherin 97.2 0.16 5.4E-06 58.5 28.9 84 462-545 457-559 (980)
82 2x19_B Importin-13; nuclear tr 97.1 0.26 8.9E-06 56.4 30.0 323 100-441 445-849 (963)
83 3m1i_C Exportin-1; heat repeat 97.1 0.092 3.2E-06 61.0 26.0 53 463-516 515-571 (1049)
84 4ffb_C Protein STU2; tubulin f 97.0 0.014 4.7E-07 56.8 15.1 189 140-333 14-214 (278)
85 3a6p_A Exportin-5; exportin-5, 96.9 0.88 3E-05 53.6 32.1 122 76-204 26-162 (1204)
86 1lrv_A LRV, leucine-rich repea 96.9 0.00064 2.2E-08 65.0 4.3 185 108-398 58-242 (244)
87 3grl_A General vesicular trans 96.8 0.43 1.5E-05 51.3 25.5 260 145-405 32-345 (651)
88 2of3_A ZYG-9; multifunctional 96.8 0.05 1.7E-06 52.3 16.7 192 12-206 26-238 (266)
89 3grl_A General vesicular trans 96.7 0.035 1.2E-06 59.7 16.4 191 137-335 124-346 (651)
90 3gs3_A Symplekin, LD45768P; he 96.7 0.039 1.3E-06 52.9 14.9 97 104-204 19-119 (257)
91 3gs3_A Symplekin, LD45768P; he 96.6 0.072 2.5E-06 51.0 16.5 156 24-203 12-172 (257)
92 4hat_C Exportin-1; heat repeat 96.2 1.4 4.8E-05 50.8 27.4 102 101-205 452-570 (1023)
93 3l9t_A Putative uncharacterize 96.2 0.044 1.5E-06 51.3 12.0 140 59-208 67-211 (240)
94 3u0r_A Apoptosis inhibitor 5; 96.2 1.2 4.3E-05 45.8 23.5 133 65-204 31-163 (507)
95 3o2t_A Symplekin; heat repeat, 96.2 0.047 1.6E-06 55.3 13.0 219 116-418 41-273 (386)
96 1lsh_A Lipovitellin (LV-1N, LV 96.0 0.064 2.2E-06 62.2 14.9 123 75-202 407-541 (1056)
97 3tt9_A Plakophilin-2; cell adh 96.0 0.13 4.5E-06 48.5 14.4 148 138-294 11-184 (233)
98 3ibv_A Exportin-T; karyopherin 95.9 0.97 3.3E-05 51.9 23.9 122 80-205 416-567 (980)
99 3tt9_A Plakophilin-2; cell adh 95.8 0.052 1.8E-06 51.3 10.7 107 100-206 8-126 (233)
100 2of3_A ZYG-9; multifunctional 95.8 0.071 2.4E-06 51.3 11.6 186 140-341 51-246 (266)
101 3l9t_A Putative uncharacterize 95.6 0.16 5.4E-06 47.6 12.7 123 41-170 85-213 (240)
102 3a6p_A Exportin-5; exportin-5, 95.3 5.4 0.00018 46.8 27.6 92 113-206 26-127 (1204)
103 3u0r_A Apoptosis inhibitor 5; 95.0 0.12 4.1E-06 53.3 10.8 122 110-251 38-161 (507)
104 3o2t_A Symplekin; heat repeat, 94.9 0.85 2.9E-05 46.1 16.7 139 42-203 40-182 (386)
105 2iw3_A Elongation factor 3A; a 94.5 2.1 7.1E-05 48.7 20.2 294 21-332 12-325 (986)
106 1lrv_A LRV, leucine-rich repea 94.1 0.11 3.8E-06 49.3 7.8 91 68-198 79-169 (244)
107 3oc3_A Helicase MOT1, MOT1; re 93.6 0.55 1.9E-05 49.4 12.1 57 261-326 375-431 (800)
108 3m1i_C Exportin-1; heat repeat 93.5 14 0.00046 42.6 33.1 138 18-163 11-165 (1049)
109 4hat_C Exportin-1; heat repeat 93.2 15 0.0005 42.3 30.2 117 78-202 31-164 (1023)
110 3gjx_A Exportin-1; transport, 93.0 16 0.00055 42.1 29.5 131 65-203 30-177 (1073)
111 1lsh_A Lipovitellin (LV-1N, LV 91.1 13 0.00043 43.0 20.9 143 128-292 388-545 (1056)
112 2iw3_A Elongation factor 3A; a 91.1 8.8 0.0003 43.6 19.0 277 77-367 29-327 (986)
113 2b6c_A Hypothetical protein EF 86.9 1.6 5.3E-05 40.6 7.7 128 69-208 61-192 (220)
114 3jxy_A Alkylpurine DNA glycosy 86.9 3 0.0001 39.0 9.7 152 70-249 68-223 (232)
115 3oc3_A Helicase MOT1, MOT1; re 86.6 14 0.00048 39.1 14.9 129 72-203 272-403 (800)
116 4gmo_A Putative uncharacterize 86.3 1.7 5.9E-05 47.7 8.9 82 464-546 555-659 (684)
117 3gjx_A Exportin-1; transport, 85.3 59 0.002 37.4 21.6 215 268-516 35-277 (1073)
118 1vsy_5 Proteasome activator BL 84.9 1.2 4.2E-05 51.0 6.9 96 70-166 767-875 (997)
119 3dad_A FH1/FH2 domain-containi 82.9 31 0.001 33.9 14.9 139 187-333 130-288 (339)
120 1ho8_A Vacuolar ATP synthase s 81.8 51 0.0017 34.0 26.9 331 174-515 77-477 (480)
121 3ldz_A STAM-1, signal transduc 81.5 5.3 0.00018 34.1 8.0 80 82-161 24-111 (140)
122 4gmo_A Putative uncharacterize 81.1 4.9 0.00017 44.1 9.7 60 144-205 43-106 (684)
123 3g2s_A C-terminal fragment of 77.0 23 0.00078 30.4 10.7 100 65-164 12-126 (149)
124 1x5b_A Signal transducing adap 76.7 8.9 0.00031 33.6 8.2 78 84-161 36-122 (163)
125 1vsy_5 Proteasome activator BL 75.4 11 0.00039 43.0 10.7 113 94-207 837-969 (997)
126 2b6c_A Hypothetical protein EF 74.8 4.2 0.00015 37.6 5.8 68 103-170 127-194 (220)
127 1juq_A ADP-ribosylation factor 74.4 17 0.00057 32.1 9.3 83 81-163 31-127 (171)
128 1t06_A Hypothetical protein; s 73.5 5.4 0.00018 37.3 6.2 167 22-209 3-185 (235)
129 1mhq_A ADP-ribosylation factor 71.5 14 0.00048 31.7 8.0 79 84-162 22-114 (148)
130 1t06_A Hypothetical protein; s 70.5 27 0.00091 32.5 10.3 62 109-170 117-186 (235)
131 3zyq_A Hepatocyte growth facto 69.5 25 0.00084 32.5 9.8 77 83-162 28-116 (226)
132 3jxy_A Alkylpurine DNA glycosy 66.7 6.9 0.00024 36.4 5.4 67 104-170 135-201 (232)
133 3dad_A FH1/FH2 domain-containi 62.6 55 0.0019 32.1 11.0 62 143-205 126-190 (339)
134 1dvp_A HRS, hepatocyte growth 61.3 32 0.0011 31.5 8.9 74 84-160 26-111 (220)
135 1upk_A MO25 protein; transfera 60.9 1.3E+02 0.0044 29.5 17.9 115 262-401 210-334 (341)
136 1elk_A Target of MYB1; superhe 59.3 43 0.0015 28.9 8.8 80 82-161 35-127 (157)
137 1ho8_A Vacuolar ATP synthase s 53.1 19 0.00066 37.1 6.2 73 260-333 394-478 (480)
138 1x5b_A Signal transducing adap 50.0 57 0.002 28.3 8.0 49 154-205 34-82 (163)
139 1vdy_A Hypothetical protein (R 50.0 31 0.0011 29.3 6.0 69 302-370 49-133 (140)
140 1upk_A MO25 protein; transfera 49.3 87 0.003 30.7 9.8 79 369-448 205-292 (341)
141 1juq_A ADP-ribosylation factor 49.1 73 0.0025 27.9 8.6 64 139-205 17-80 (171)
142 3g2s_A C-terminal fragment of 46.0 1.4E+02 0.0047 25.4 11.7 35 307-341 53-87 (149)
143 1mhq_A ADP-ribosylation factor 45.5 93 0.0032 26.4 8.5 49 154-205 20-68 (148)
144 1fyh_A Interferon-gamma; cytok 44.2 2E+02 0.0067 26.6 11.2 118 350-469 102-235 (258)
145 3s4w_B Protein FACD2, fanconi 44.0 4.5E+02 0.015 30.8 16.1 357 121-512 146-547 (1323)
146 3ldz_A STAM-1, signal transduc 42.9 78 0.0027 26.6 7.6 49 154-205 24-72 (140)
147 3zyq_A Hepatocyte growth facto 38.9 40 0.0014 31.1 5.5 34 307-340 50-83 (226)
148 3qml_C Protein SLS1, nucleotid 36.4 2E+02 0.0067 27.8 9.9 29 484-514 161-189 (315)
149 1elk_A Target of MYB1; superhe 32.0 2.3E+02 0.0079 24.1 9.0 51 153-205 34-84 (157)
150 3s51_A Protein FACI, fanconi a 25.8 4.4E+02 0.015 30.8 12.0 43 483-527 584-626 (1308)
151 3fga_B Serine/threonine-protei 24.4 5.4E+02 0.019 25.7 16.6 172 375-548 131-318 (403)
152 3rru_A TOM1L1 protein; structu 23.5 2.1E+02 0.0072 24.3 7.0 55 314-368 66-131 (152)
153 1dvp_A HRS, hepatocyte growth 22.6 2.7E+02 0.0093 25.1 8.2 49 154-205 24-72 (220)
154 1vdy_A Hypothetical protein (R 21.5 74 0.0025 26.9 3.6 38 131-168 45-82 (140)
No 1
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=6.3e-78 Score=664.27 Aligned_cols=522 Identities=36% Similarity=0.620 Sum_probs=474.5
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHh
Q 008746 11 PSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNY 90 (555)
Q Consensus 11 ~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~ 90 (555)
.+.|+.++++|+.|+|++|++ ++.++|+++++|++|++++|+|++++|++++++++|+|+++||+||+|++.+
T Consensus 4 ~~~f~~~~~~e~~~i~~~L~~-------~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~ 76 (591)
T 2vgl_B 4 SKYFTTNKKGEIFELKAELNN-------EKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNY 76 (591)
T ss_dssp CCTTCCCSSSHHHHHHHHTTS-------SCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhcccccCChHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 357888899999999999997 5678999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc
Q 008746 91 AKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (555)
Q Consensus 91 ~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~ 170 (555)
++.+||.+++++|+++|||+|+||.+|++||++||+++++++.+.+.+.+.+++.|++|+|||+|+.|+.++++.+|+.+
T Consensus 77 ~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 77 AKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp HHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHc
Q 008746 171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK 250 (555)
Q Consensus 171 ~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~ 250 (555)
.+.+|++.+..+ ++|+|++|+.+|+.+|.++++.+|+.. ... +.++.+.+|++.+.+++||+|+.++++|++
T Consensus 157 ~~~~~~~~l~~l-L~d~d~~V~~~A~~aL~~i~~~~~~~~------~~~-l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~ 228 (591)
T 2vgl_B 157 EDQGFLDSLRDL-IADSNPMVVANAVAALSEISESHPNSN------LLD-LNPQNINKLLTALNECTEWGQIFILDCLSN 228 (591)
T ss_dssp HHHHHHHHHHHT-TSCSCHHHHHHHHHHHHHHTTSCCSCC------SCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHH-hCCCChhHHHHHHHHHHHHHhhCCCcc------chh-ccHHHHHHHHHcCCCCCchHHHHHHHHHHH
Confidence 434699999998 699999999999999999998776420 011 223468888888889999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC---cchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 008746 251 YVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS---MTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH 327 (555)
Q Consensus 251 ~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~---~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~ 327 (555)
|.|.++++...+++.+.+.+++.|++|++||+++++++.+. .++....+.+++.++|..+++ +++|+||+||+.+.
T Consensus 229 l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 229 YNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp SCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 99999888899999999999999999999999999998742 223333455677777776654 89999999999999
Q ss_pred HHHhhCCcccccccceeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCc-
Q 008746 328 ILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD- 406 (555)
Q Consensus 328 ~l~~~~p~~~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~- 406 (555)
.++..+|+.+.+|++.|+|..+||.+||++|+++|+.+++++|++.|+++|.+|+.+.|.+++.+++.+|+.++.+||.
T Consensus 308 ~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~ 387 (591)
T 2vgl_B 308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS 387 (591)
T ss_dssp HHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH
Confidence 9999999999999999999988889999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCCchHHHHHHHHHHhccccCCCChHHHH
Q 008746 407 VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYIL 486 (555)
Q Consensus 407 ~~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~~~~~l 486 (555)
..|+++++++++...++++..+++.+++++++++|+.++.++..+.+.+ +.+.++.++.+++|++||||...+++++++
T Consensus 388 ~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l-~~~~~~~~~~~~~wilGey~~~~~~~~~~l 466 (591)
T 2vgl_B 388 AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENL-DSLDEPDARAAMIWIVGEYAERIDNADELL 466 (591)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTT-TTCCSHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHH-HhccCHHHHHHHHHHHHcccccccCHHHHH
Confidence 5799999999999999999999999999999999998877665565554 567889999999999999999999999999
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhccC-CCcchhhccccccccC
Q 008746 487 ESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLAD-FHQVVFYGFFPPFSFP 550 (555)
Q Consensus 487 ~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~~~~~d-~d~evq~Ra~~~l~~~ 550 (555)
+.++++|..++ +.||.+++++++|++.+.|+..++.++++|+.+..| .|+||||||++|+.+-
T Consensus 467 ~~l~~~~~~~~-~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 467 ESFLEGFHDES-TQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHSTTCSSSC-HHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHHHhhccCC-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 99999999998 999999999999999999987778999999999776 6889999999998884
No 2
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=8.6e-79 Score=672.04 Aligned_cols=512 Identities=19% Similarity=0.232 Sum_probs=437.9
Q ss_pred CCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCCh
Q 008746 17 SGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPD 96 (555)
Q Consensus 17 ~~~~e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e 96 (555)
..++|+++||++|++. .+.+..+|+++++|++|++++|+|++++|++|+++++|+|++.||+||+|++.+++.+||
T Consensus 32 ~i~~E~~~ir~~~~~~----~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e 107 (621)
T 2vgl_A 32 RINKELANIRSKFKGD----KALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSE 107 (621)
T ss_dssp HHHHHHHHHHHHHHSS----SCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcH
Confidence 4568899999999841 113467899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhcc--CCCChHHHHHHHHHHHHHhhhCCCcccCCC
Q 008746 97 LALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL--KDNNSYVRTVAVIGVLKLYHISAPTCIDAD 174 (555)
Q Consensus 97 ~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l--~d~~~~VRk~A~lal~kl~~~~p~~~~~~~ 174 (555)
.++|+||+|+||++|+||++|++||++||+++++++++.+.+.|++++ .|++|||||+|++|+.++|+.+|+.+..++
T Consensus 108 ~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~ 187 (621)
T 2vgl_A 108 LIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGD 187 (621)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCS
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchh
Confidence 999999999999999999999999999999999999999999999999 999999999999999999999999984349
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhc--CCC-----------ChhHH
Q 008746 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI--KEF-----------SEWAQ 241 (555)
Q Consensus 175 ~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l--~~~-----------~pw~q 241 (555)
|.+.+.++ ++|+||+|+.+|+.++.++++.+|.... .+++ ..++.|.+.+ +++ +||+|
T Consensus 188 ~~~~l~~l-L~d~d~~V~~~a~~~l~~i~~~~~~~~~-------~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~q 258 (621)
T 2vgl_A 188 WTSRVVHL-LNDQHLGVVTAATSLITTLAQKNPEEFK-------TSVS-LAVSRLSRIVTSASTDLQDYTYYFVPAPWLS 258 (621)
T ss_dssp CHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHCHHHHT-------THHH-HHHHHHHHHHHCCSSSCSTTEETTEESHHHH
T ss_pred HHHHHHHH-hCCCCccHHHHHHHHHHHHHHhChHHHH-------HHHH-HHHHHHHHHHhCCCCCccchhhcCCCCchHH
Confidence 99999998 6999999999999999999987764211 1121 1233332221 222 89999
Q ss_pred HHHHHHHHccCCC-ChhHHHHHHHHHHHHh------------ccCch--HHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Q 008746 242 CLVLELVAKYVPL-DSNEIFDIMNLLEDRL------------QHANG--AVVLSTIKVFLHLTLSMTDVHQQVYERIKAP 306 (555)
Q Consensus 242 ~~iL~~L~~~~~~-~~~~~~~i~~~l~~~L------------~s~~~--aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~ 306 (555)
++++++|+.|.+. +++....+.+.+..++ +|.|+ +|++||+++++++.+.. . ....+.+.
T Consensus 259 i~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~-~----~~~~~~~~ 333 (621)
T 2vgl_A 259 VKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEP-N----LLVRACNQ 333 (621)
T ss_dssp HHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH-H----HHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcH-H----HHHHHHHH
Confidence 9999999999985 4565565666555444 34455 99999999999987532 2 23455677
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhCC--cccccccceee-ecc-CCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHh
Q 008746 307 LLTLVSSGSPEQSYAVLSHLHILVMRAP--FIFASDYKHFY-CQY-NEPSYVKKLKLEMLTAVANESNTYEIVTELCEYA 382 (555)
Q Consensus 307 L~~ll~~~~~~~ry~aL~~l~~l~~~~p--~~~~~~~~~f~-~~~-~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~ 382 (555)
|..|+.++++|+||+||+.+..++..+| ..++.|...|+ |.. ++|.+||++||++|+.++|++|++.|++||.+|+
T Consensus 334 L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl 413 (621)
T 2vgl_A 334 LGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYL 413 (621)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHH
Confidence 8899988999999999999999999887 57788887664 666 8999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHhcccCc-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCC-
Q 008746 383 ANVDIPIARESIRAVGKIALQQYD-VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQ- 460 (555)
Q Consensus 383 ~~~d~~~~~~~i~~i~~la~~~~~-~~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~- 460 (555)
.+.|.+|+++++++|+.||++||. ..||++++++++..+|+++.+|+|..+++++.++|+.+++++..+...+ +...
T Consensus 414 ~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l-~~~~~ 492 (621)
T 2vgl_A 414 ETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEAL-QAPAC 492 (621)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHH-TSSSC
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHH-cCccc
Confidence 999999999999999999999976 6899999999999999999999999999999999999877544444333 2222
Q ss_pred chHHHHHHHHHHhccccCCCC-----hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhcc--
Q 008746 461 EPKAKAALIWMLGEYSQDMQD-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLA-- 533 (555)
Q Consensus 461 ~~~~~~~~~wiiGEy~~~~~~-----~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~~~~~-- 533 (555)
...+.++++|++||||+.+++ +.++++.++++|..++ +.||+++|++++|++.+.| +..+.+..+|+.+.+
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~-~~v~~~~Lta~~Kl~~~~p-~~~~~i~~~l~~~~~~~ 570 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCS-VPTRALLLSTYIKFVNLFP-EVKATIQDVLRSDSQLK 570 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHCG-GGHHHHHHHHSSHHHHS
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHhcCC
Confidence 123445667999999998754 3589999999999998 9999999999999999988 467889999999998
Q ss_pred CCCcchhhcccccccc
Q 008746 534 DFHQVVFYGFFPPFSF 549 (555)
Q Consensus 534 d~d~evq~Ra~~~l~~ 549 (555)
|.|+||||||++|+.+
T Consensus 571 ~~d~evrdRA~~y~~L 586 (621)
T 2vgl_A 571 NADVELQQRAVEYLRL 586 (621)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999887
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.4e-74 Score=638.16 Aligned_cols=508 Identities=16% Similarity=0.160 Sum_probs=433.9
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChH
Q 008746 18 GKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDL 97 (555)
Q Consensus 18 ~~~e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~ 97 (555)
.++|+++||++|++ ++..+|+++++|++|++++|+|++++|++++++++|+|+++||+||+|+..+++.+||+
T Consensus 32 i~~e~~~ir~~l~~-------~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~ 104 (618)
T 1w63_A 32 IQKECAAIRSSFRE-------EDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDV 104 (618)
T ss_dssp HHHHHHHHHHHHTT-------TCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHHHHhhC-------CCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHH
Confidence 46788899999987 34567999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchH
Q 008746 98 ALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPP 177 (555)
Q Consensus 98 ~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~ 177 (555)
++|++|+|+|||+|+||.+|++|+++||+++++++++.+.+.|.+++.|++|||||+|+.|++++|+.+|+.+ ++|.+
T Consensus 105 ~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--~~~~~ 182 (618)
T 1w63_A 105 HLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--EMFLP 182 (618)
T ss_dssp HHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--GGGGG
T ss_pred HHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988 68999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhc------------CCCChhHHHHHH
Q 008746 178 TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI------------KEFSEWAQCLVL 245 (555)
Q Consensus 178 ~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l------------~~~~pw~q~~iL 245 (555)
.+..+ ++|+|++|+.+|+.+|.+++..+|+. ......++ + .+.+++..+ +..+||+|+.++
T Consensus 183 ~l~~l-L~D~d~~V~~~Al~~L~~i~~~~~~~----~~~~~~~v-~-~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il 255 (618)
T 1w63_A 183 ATKNL-LNEKNHGVLHTSVVLLTEMCERSPDM----LAHFRKLV-P-QLVRILKNLIMSGYSPEHDVSGISDPFLQVRIL 255 (618)
T ss_dssp GTTTS-TTCCCHHHHHHHHHHHHHHCCSHHHH----HHHHHTTH-H-HHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHH
T ss_pred HHHHH-hCCCCHhHHHHHHHHHHHHHHhChHH----HHHHHHHH-H-HHHHHHHHHHcCCCCccccccCCCCChHHHHHH
Confidence 99998 69999999999999999998765531 00011111 1 122222221 136999999999
Q ss_pred HHHHccCCCChhHHHHHHHHHHHHh------ccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhH
Q 008746 246 ELVAKYVPLDSNEIFDIMNLLEDRL------QHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQS 319 (555)
Q Consensus 246 ~~L~~~~~~~~~~~~~i~~~l~~~L------~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~r 319 (555)
++|+.+.+.+++....+.+.+..++ ++.+.+|++||+++++++... +.. ...+.+.|..|+.++++|+|
T Consensus 256 ~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l----~~~a~~~L~~~L~~~d~~vr 330 (618)
T 1w63_A 256 RLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SGL----RVLAINILGRFLLNNDKNIR 330 (618)
T ss_dssp HHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHH----HHHHHHHHHHHHTCSSTTTH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HHH----HHHHHHHHHHHHhCCCCchH
Confidence 9999999988876666666666554 345679999999999998653 222 23456778888998999999
Q ss_pred HHHHHHHHHHHhhCCcccccccc-eeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 008746 320 YAVLSHLHILVMRAPFIFASDYK-HFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVG 398 (555)
Q Consensus 320 y~aL~~l~~l~~~~p~~~~~~~~-~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~ 398 (555)
|+||..+..++..+|+.+.+|.. .|.|..|+|.+||++|+++|+.+++++|++.|++||.+|+.+.|.+|+.+++.+||
T Consensus 331 ~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~ 410 (618)
T 1w63_A 331 YVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIF 410 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999885 45799999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCc-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhcccCCCchHHHHHHHHHHhcccc
Q 008746 399 KIALQQYD-VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQ 477 (555)
Q Consensus 399 ~la~~~~~-~~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~ 477 (555)
.+|.+|++ ..||++++++++...|+++..++|.+++++++++|+.++.++..+...+.+.+.......+++|++||||+
T Consensus 411 ~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 411 LAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence 99999965 68999999999999989999999999999999999998776655555543333334444578999999997
Q ss_pred CCCC---------------hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhccCCCcchhhc
Q 008746 478 DMQD---------------APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQVVFYG 542 (555)
Q Consensus 478 ~~~~---------------~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~~~~~d~d~evq~R 542 (555)
.+.+ ..++++.+++.| .++ +.||++++++++|++.+.|+. .+.+..+|..+..|.|+|||||
T Consensus 491 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~-~~vr~~~lta~~Kl~~~~~~~-~~~l~~~L~~~~~~~d~evrdR 567 (618)
T 1w63_A 491 LLVSGQCEEEEPIQVTEDEVLDILESVLISN-MST-SVTRGYALTAIMKLSTRFTCT-VNRIKKVVSIYGSSIDVELQQR 567 (618)
T ss_dssp HHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCC-HHHHHHHHHHHHHHHTTCSSC-HHHHHHHHHHHTTCSCHHHHHH
T ss_pred HhcccccccccccCCCHHHHHHHHHHHHhcc-CCC-HHHHHHHHHHHHHHHHhCcch-HHHHHHHHHHhcCCCCHHHHHH
Confidence 6532 234555555555 566 999999999999999999854 7889999999999999999999
Q ss_pred ccccccc
Q 008746 543 FFPPFSF 549 (555)
Q Consensus 543 a~~~l~~ 549 (555)
|++|+.+
T Consensus 568 A~~y~~l 574 (618)
T 1w63_A 568 AVEYNAL 574 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999887
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=8.3e-50 Score=405.18 Aligned_cols=305 Identities=15% Similarity=0.245 Sum_probs=215.8
Q ss_pred ChHHHHHHHHHHHHHHhcCCC-----cchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCCh
Q 008746 40 IDDSKRELFKKVISYMTIGID-----VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDP 114 (555)
Q Consensus 40 ~~~~k~~~l~kli~~~~~G~d-----~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~ 114 (555)
+..+++++++|+||+|++|++ ++++|++|+++++|+|+++||+||+|+..+++..+| ++|+||+|+||++|+||
T Consensus 40 ~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e-~iLv~Nsl~kDl~~~N~ 118 (355)
T 3tjz_B 40 NPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED-VIIVTSSLTKDMTGKED 118 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC-GGGGHHHHHHHHHSSCH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhcCCCcH
Confidence 345667799999999999998 678999999999999999999999999999998655 58999999999999999
Q ss_pred HHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHH
Q 008746 115 MIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVAN 194 (555)
Q Consensus 115 ~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~ 194 (555)
++|++|||+||+|.++++++.+.+.+++++.|++|||||+|++|.+|+++.+|+.+ ..|.+.+.++ ++|+||+|+.+
T Consensus 119 ~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v--~~~~~~l~~l-l~d~n~~V~~~ 195 (355)
T 3tjz_B 119 SYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV--KRWVNEAQEA-ASSDNIMVQYH 195 (355)
T ss_dssp HHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH--HTTHHHHHHH-TTCSSHHHHHH
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHH-hcCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 6899999998 69999999999
Q ss_pred HHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCC---CChhHHHHHHHHHHccCCCC-hhHHHHHHHHHHHHh
Q 008746 195 CLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE---FSEWAQCLVLELVAKYVPLD-SNEIFDIMNLLEDRL 270 (555)
Q Consensus 195 a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~---~~pw~q~~iL~~L~~~~~~~-~~~~~~i~~~l~~~L 270 (555)
|+.++.++.+.++ ..+.+|+..+.. .+||+|+.++++++++.+.+ +++...+++.+.+.|
T Consensus 196 Al~lL~ei~~~d~----------------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L 259 (355)
T 3tjz_B 196 ALGLLYHVRKNDR----------------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCL 259 (355)
T ss_dssp HHHHHHHHHTTCH----------------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCC
T ss_pred HHHHHHHHHhhch----------------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 9999999987543 134555555444 38999999999999999998 678899999999999
Q ss_pred ccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccce-eeeccC
Q 008746 271 QHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKH-FYCQYN 349 (555)
Q Consensus 271 ~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~-f~~~~~ 349 (555)
+|.|++|+|||+++|+.+...... .+..+.++|..|++++++|+||+||+.+..++..+|++++.+... .-|..|
T Consensus 260 ~~~~~aVvyEa~k~I~~l~~~~~~----~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d 335 (355)
T 3tjz_B 260 RNKHEMVVYEAASAIVNLPGCSAK----ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTD 335 (355)
T ss_dssp CCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC------------------------
T ss_pred cCCChHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccC
Confidence 999999999999999988653222 234456778889999999999999999999999999998876654 458889
Q ss_pred CcHHHHHHHHHHHHHccCC
Q 008746 350 EPSYVKKLKLEMLTAVANE 368 (555)
Q Consensus 350 dd~~Ir~~aL~iL~~l~~~ 368 (555)
.+.+|+..|+..|.+-+++
T Consensus 336 ~n~sI~t~Aittllktg~e 354 (355)
T 3tjz_B 336 ANRSIATLAITTLLKTGSE 354 (355)
T ss_dssp -------------------
T ss_pred CcHhHHHHHHHHhhhccCC
Confidence 9999999999999988776
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.78 E-value=2.1e-17 Score=180.55 Aligned_cols=471 Identities=13% Similarity=0.058 Sum_probs=315.4
Q ss_pred hHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHH--HHHHHHHhHcCCCChHHHHHHHHHhcCCC---hhhhHHHHHH
Q 008746 64 VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL--LTINFLQRDCKDEDPMIRGLALRSLCSLR---VANLVEYLVG 138 (555)
Q Consensus 64 lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~--l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~ei~~~l~~ 138 (555)
+++.+..++.+++..+|..+--++..+....++..+ .....+.+-..++++.+|..|...++.+. .+...+.+.+
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~ 167 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQ 167 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 444444556677788888888888877765543211 23444444456778888888877776542 2455677888
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHh
Q 008746 139 PLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRERE 218 (555)
Q Consensus 139 ~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~ 218 (555)
.+.+++.|+++.||+.|+.++.++....+.....+.+++.+..+ ++|.++.|+..|+.++..++..-+.. ...
T Consensus 168 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~------~~~ 240 (588)
T 1b3u_A 168 YFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNL-ASDEQDSVRLLAVEACVNIAQLLPQE------DLE 240 (588)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHH-HTCSCHHHHTTHHHHHHHHHHHSCHH------HHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHhCCHH------HHH
Confidence 88889999999999999999999987655321124677888887 58999999999999999887643210 000
Q ss_pred hhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCC-Chh-HHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcc-hh
Q 008746 219 ALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-DSN-EIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT-DV 295 (555)
Q Consensus 219 ~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~-~~~-~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~-~~ 295 (555)
...+..+...+.+.++..+....+.|..+... +++ ....+++.+..++++.++.|...|+.++..+....+ ..
T Consensus 241 ----~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 241 ----ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp ----HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred ----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence 11223333344567777888888877776522 111 124567778888889999999988888876643221 11
Q ss_pred -HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCc-ccccccc-ee-eeccCCcHHHHHHHHHHHHHccCCCC-
Q 008746 296 -HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYK-HF-YCQYNEPSYVKKLKLEMLTAVANESN- 370 (555)
Q Consensus 296 -~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~-~~~~~~~-~f-~~~~~dd~~Ir~~aL~iL~~l~~~~N- 370 (555)
....+..+.+.+..++++.++.+|..+...+..+....+. .+.+++. .| .+..|++..+|..+++.|..++..-.
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 396 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI 396 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH
T ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH
Confidence 0122345566677788888999999999888877654322 1112221 11 13456678899999988877764332
Q ss_pred ---HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcH---HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCC-
Q 008746 371 ---TYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQW- 443 (555)
Q Consensus 371 ---~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~---~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~- 443 (555)
...+++.|..++.+.+..++..++..++.++..++.. ...+..++.++......+...++..+..+....+..
T Consensus 397 ~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 476 (588)
T 1b3u_A 397 RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW 476 (588)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh
Confidence 3567788888888888889999999999998765431 346778888887776678888888888777654331
Q ss_pred -cchHHHHHhhhcccCCCchHHHHHHHHHHhccccCCCC---hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCch
Q 008746 444 -SHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD---APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPE 519 (555)
Q Consensus 444 -~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~---~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~ 519 (555)
...++..+.++. ...+..+|.+++|.+|+.+..... .+.++..+.+.+.+.. ++||..++.++++++......
T Consensus 477 ~~~~llp~l~~~~--~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~ 553 (588)
T 1b3u_A 477 AHATIIPKVLAMS--GDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPV-ANVRFNVAKSLQKIGPILDNS 553 (588)
T ss_dssp HHHHTHHHHHHTT--TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSC-HHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCC-chHHHHHHHHHHHHHHHhchh
Confidence 112222333332 335678899999999988765432 2345556666655555 999999999999998655432
Q ss_pred h-HHHHHHHHHHhccCCCcchhhccccccc
Q 008746 520 T-QKVLGAALAAGLADFHQVVFYGFFPPFS 548 (555)
Q Consensus 520 ~-~~~l~~vl~~~~~d~d~evq~Ra~~~l~ 548 (555)
. .+.+...+.....|.|.+||+.|.+.+.
T Consensus 554 ~~~~~~~p~l~~l~~d~d~~vr~~a~~al~ 583 (588)
T 1b3u_A 554 TLQSEVKPILEKLTQDQDVDVKYFAQEALT 583 (588)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 1 2345556666788999999999887653
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.72 E-value=5.3e-16 Score=169.35 Aligned_cols=427 Identities=12% Similarity=0.102 Sum_probs=289.2
Q ss_pred hhhhcCCCCchhHHHHHHHHHHhcCCCChHH-HHHHHHHHhHcCCCChHHHHHHHHHhcCC----ChhhhHHHHHHHHhh
Q 008746 68 MVMCSATSDIVLKKMCYLYVGNYAKVNPDLA-LLTINFLQRDCKDEDPMIRGLALRSLCSL----RVANLVEYLVGPLGL 142 (555)
Q Consensus 68 vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~-~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~~ei~~~l~~~i~~ 142 (555)
+.++..+++...|..+...+..+...-++.. --+.+.+.+-++|+++.+|..|+++++.+ +.+...+.++|.+..
T Consensus 131 l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 210 (588)
T 1b3u_A 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSN 210 (588)
T ss_dssp HHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHH
Confidence 3456677888888888888877765544332 23456677778999999999999999987 334455778888999
Q ss_pred ccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhcc
Q 008746 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALIS 222 (555)
Q Consensus 143 ~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~ 222 (555)
+++|+++.||+.|+.++..+....|+....+.+.+.+..+ .+|+++.|+.+|+.+|..+...-+. +. ..
T Consensus 211 ~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-~~d~~~~vR~~a~~~l~~l~~~~~~-------~~---~~ 279 (588)
T 1b3u_A 211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQA-AEDKSWRVRYMVADKFTELQKAVGP-------EI---TK 279 (588)
T ss_dssp HHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHH-HTCSSHHHHHHHHHTHHHHHHHHCH-------HH---HH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhCc-------cc---ch
Confidence 9999999999999999999987655421124567788887 5899999999999999988763211 00 01
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHccCCCCh------hHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhH
Q 008746 223 KPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS------NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVH 296 (555)
Q Consensus 223 ~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~------~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~ 296 (555)
...+..++..+.+.++..+......|..+...-+ .....+++.+..++++.++.|...++.++..+......
T Consensus 280 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-- 357 (588)
T 1b3u_A 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-- 357 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--
T ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--
Confidence 1244556666778888898888887776642211 12455777888888999999999988888766542211
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCc-c----cccccceeeeccCCcHHHHHHHHHHHHHccCC---
Q 008746 297 QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-I----FASDYKHFYCQYNEPSYVKKLKLEMLTAVANE--- 368 (555)
Q Consensus 297 ~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~-~----~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~~--- 368 (555)
......+.+.+..++.+.++++|..++..+..+....+. . +.+.+.. +..+.++.+|..+++.+..++..
T Consensus 358 ~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~--~~~d~~~~vr~~~~~~l~~l~~~~~~ 435 (588)
T 1b3u_A 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE--LAEDAKWRVRLAIIEYMPLLAGQLGV 435 (588)
T ss_dssp HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHH--HHTCSSHHHHHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--HhcCCCchHHHHHHHHHHHHHHHcCH
Confidence 112345566677788888899999999999888765431 1 1122221 23567789999999998887532
Q ss_pred -CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcH---HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCC--
Q 008746 369 -SNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQ-- 442 (555)
Q Consensus 369 -~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~---~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~-- 442 (555)
.....+++-+..++.+.+.++|..++.+++.++..+.+. ..++..+.+++......+...++..+..+....+.
T Consensus 436 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~ 515 (588)
T 1b3u_A 436 EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI 515 (588)
T ss_dssp GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 223467888888888889999999999999999876542 12344444444444344555555566555543211
Q ss_pred CcchHHHHHhhhcccCCCchHHHHHHHHHHhccccCCCCh---HHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 008746 443 WSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDA---PYILESLTENWEEEPSAEVRLHLLTAVMKC 512 (555)
Q Consensus 443 ~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~~---~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl 512 (555)
..+.++..+.+.+ ...++.+|..++|.+|+++..+... +.++..+.. ...+.++.||..+..++..+
T Consensus 516 ~~~~~~~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~-l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 516 TTKHMLPTVLRMA--GDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK-LTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHTHHHHHHGG--GCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhC--CCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH-HcCCCchhHHHHHHHHHHHh
Confidence 0112223333333 3356889999999999998766431 233333333 44555599999999888764
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.66 E-value=2.7e-13 Score=155.28 Aligned_cols=520 Identities=12% Similarity=0.047 Sum_probs=317.1
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcC---CCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChH
Q 008746 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIG---IDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDL 97 (555)
Q Consensus 21 e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G---~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~ 97 (555)
+...+|..+-+...+ ++. .-+..+..++..+... ...+.+++.+++.+++++...|..+...+..+.+..++.
T Consensus 87 ~~~~ik~~ll~~l~~---~~~-~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~ 162 (852)
T 4fdd_A 87 VTDFIKSECLNNIGD---SSP-LIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162 (852)
T ss_dssp HHHHHHHHHHTTTTC---SSH-HHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHcC---CCH-HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 344566666554432 222 3344444556555432 345567888889999999989988888777766544433
Q ss_pred ---------HHHHHHHHHhHcCCCChHHHHHHHHHhcCCCh------hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHH
Q 008746 98 ---------ALLTINFLQRDCKDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKL 162 (555)
Q Consensus 98 ---------~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~------~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl 162 (555)
.-.++..+.+-++++++.+|..|+++++.+.. ....+.+++.+.+++.|+++.||+.|+.|+.++
T Consensus 163 ~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVML 242 (852)
T ss_dssp HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 23456778888899999999999999998742 123456778888889999999999999999999
Q ss_pred hhhCCCcccC--CCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc-----ccc-hHhhhHHh----------------
Q 008746 163 YHISAPTCID--ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA-----STS-EEASRERE---------------- 218 (555)
Q Consensus 163 ~~~~p~~~~~--~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~-----~~~-~~~~~~~~---------------- 218 (555)
...+|+.+.. +++++.+... ..|.|+.|+..|+..+..+++... .+. ....+...
T Consensus 243 ~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 243 LEVRMDRLLPHMHNIVEYMLQR-TQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp HHHCHHHHGGGHHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred HHhCHHHHHHHHHHHHHHHHHH-ccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence 9988775411 2345555565 588999999999988887764210 000 00000000
Q ss_pred --------------------------------hhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhH----HHHH
Q 008746 219 --------------------------------ALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE----IFDI 262 (555)
Q Consensus 219 --------------------------------~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~----~~~i 262 (555)
..+-+..+..+.+.+.+.++..+...+..|+.+....++. ...+
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~ 401 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPEL 401 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHH
T ss_pred cccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 0000112222223344455556666666666665433221 2456
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHhcCCcch-hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccccccc
Q 008746 263 MNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (555)
Q Consensus 263 ~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~-~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~ 341 (555)
++.+...+++.++.|+..|+.++..+....+. .....+..+.+.|...+.++++.+|..|...+..++...+..+.+++
T Consensus 402 l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l 481 (852)
T 4fdd_A 402 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL 481 (852)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH
Confidence 77778888889999999999988766542110 00112334555666677778899999999999888765443333433
Q ss_pred ceee-----ecc----------------------------------------------CCcHHHHHHHHHHHHHccCC--
Q 008746 342 KHFY-----CQY----------------------------------------------NEPSYVKKLKLEMLTAVANE-- 368 (555)
Q Consensus 342 ~~f~-----~~~----------------------------------------------~dd~~Ir~~aL~iL~~l~~~-- 368 (555)
..+. +.. +++..++ ..++.+..++..
T Consensus 482 ~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g 560 (852)
T 4fdd_A 482 AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQ 560 (852)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHh
Confidence 2110 111 1222221 233333333221
Q ss_pred CC----HHHHHHH----HHHHh-------------hcCCHHHHHHHHHHHHHHhcccCc-HH------HHHHHHHHHhhc
Q 008746 369 SN----TYEIVTE----LCEYA-------------ANVDIPIARESIRAVGKIALQQYD-VN------AIVDRLLQFLEM 420 (555)
Q Consensus 369 ~N----~~~Iv~e----L~~y~-------------~~~d~~~~~~~i~~i~~la~~~~~-~~------~~i~~ll~ll~~ 420 (555)
.. ...+++. +..++ ...|.+++..++..++.++..... .. .+++.+++.+..
T Consensus 561 ~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 640 (852)
T 4fdd_A 561 SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD 640 (852)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCC
Confidence 01 1122221 11121 122677888888898888876543 22 257777887776
Q ss_pred ccchhHHHHHHHHHHHHHhCCCC-cchH---HHHHhhhcccCCCchHHHHHHHHHHhccccCCC-----ChHHHHHHHHH
Q 008746 421 EKDYVTAEALVLVKDLLRKYPQW-SHDC---IAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ-----DAPYILESLTE 491 (555)
Q Consensus 421 ~~~~v~~e~i~~i~~ii~~~~~~-~~~~---~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~-----~~~~~l~~l~~ 491 (555)
....+.+++...+.++....++. ..+. +..+.+.+ ...++.++..++|.+|+++...+ -...++..+.+
T Consensus 641 ~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l--~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~ 718 (852)
T 4fdd_A 641 KMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNL--NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVE 718 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTC--CTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--CccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 66678888888888888776643 2221 22222222 33467889999999999865542 24567777776
Q ss_pred hhhcC-CcHHHHHHHHHHHHHHHhcCCchh----HHHHHHHHHHhccCCCcchhhccccccc
Q 008746 492 NWEEE-PSAEVRLHLLTAVMKCFFKRPPET----QKVLGAALAAGLADFHQVVFYGFFPPFS 548 (555)
Q Consensus 492 ~~~~e-~~~~vr~~~L~a~~Kl~~~~p~~~----~~~l~~vl~~~~~d~d~evq~Ra~~~l~ 548 (555)
.+... ....++..+..+++++...+|+.. ..++..++.....-.|.+.++-|+..+-
T Consensus 719 ~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~ 780 (852)
T 4fdd_A 719 IINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGIC 780 (852)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred HhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 65432 226889999999999999887432 3444445554444466777777776643
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.65 E-value=8e-14 Score=159.64 Aligned_cols=405 Identities=12% Similarity=0.060 Sum_probs=268.2
Q ss_pred CCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCCh-hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCccc
Q 008746 93 VNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRV-ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI 171 (555)
Q Consensus 93 ~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~ 171 (555)
.+++. +--+..+.+...|+|+.+|..|-..|..+.. |+....+...+ ..+.+.++.||..|+..+.+..+.+=..+.
T Consensus 7 ~~~~~-~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il-~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~ 84 (852)
T 4fdd_A 7 PDEQG-LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVL-TKLKSEDEPTRSLSGLILKNNVKAHFQNFP 84 (852)
T ss_dssp CCHHH-HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHH-HTCTTSCHHHHHHHHHHHHHHTTTSGGGCC
T ss_pred CChhh-HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHH-hccCCCChHHHHHHHHHHHHHHHHccCCCC
Confidence 33343 3444555666678889999998888877754 66555554333 334677889999998888877643211110
Q ss_pred ---CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHH
Q 008746 172 ---DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELV 248 (555)
Q Consensus 172 ---~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L 248 (555)
...+.+.+... +.|+++.|+..+..++..+...++. ..| +..+..|++.+.+.++..+...+..|
T Consensus 85 ~~~~~~ik~~ll~~-l~~~~~~vr~~~a~~i~~ia~~~~~-------~~w----p~ll~~L~~~l~~~~~~~r~~al~~L 152 (852)
T 4fdd_A 85 NGVTDFIKSECLNN-IGDSSPLIRATVGILITTIASKGEL-------QNW----PDLLPKLCSLLDSEDYNTCEGAFGAL 152 (852)
T ss_dssp HHHHHHHHHHHHTT-TTCSSHHHHHHHHHHHHHHHHHTTT-------TTC----TTHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHhcCc-------ccc----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 01233444444 5788889999999999888876531 111 12455666667777777777777777
Q ss_pred HccCCCChhH---------HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhH
Q 008746 249 AKYVPLDSNE---------IFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQS 319 (555)
Q Consensus 249 ~~~~~~~~~~---------~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~r 319 (555)
..++...+.. ...+++.+...+++.++.|+.+|++++..+....+......+..+.+.+..+++++++++|
T Consensus 153 ~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr 232 (852)
T 4fdd_A 153 QKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVR 232 (852)
T ss_dssp HHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 6654221111 3445666666778889999999999997665432211111123344556677888899999
Q ss_pred HHHHHHHHHHHhhCCcccccccceee-----eccCCcHHHHHHHHHHHHHccCCC--------CHHHHHHHHHHHh----
Q 008746 320 YAVLSHLHILVMRAPFIFASDYKHFY-----CQYNEPSYVKKLKLEMLTAVANES--------NTYEIVTELCEYA---- 382 (555)
Q Consensus 320 y~aL~~l~~l~~~~p~~~~~~~~~f~-----~~~~dd~~Ir~~aL~iL~~l~~~~--------N~~~Iv~eL~~y~---- 382 (555)
..+++.+..++..+|+.+.+|+..++ +..+++..+|..+++.+..++... .+..+++.+...+
T Consensus 233 ~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e 312 (852)
T 4fdd_A 233 KNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSD 312 (852)
T ss_dssp HHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 99999999999999988888875432 446778899999999999998643 3445666666665
Q ss_pred -------hc--CC---------HHHHHHHHHHHHHHhcccCcH--HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCC
Q 008746 383 -------AN--VD---------IPIARESIRAVGKIALQQYDV--NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQ 442 (555)
Q Consensus 383 -------~~--~d---------~~~~~~~i~~i~~la~~~~~~--~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~ 442 (555)
.+ .| ..++..+...++.++...++. ...+..+.+++.+....+...++..+..+....++
T Consensus 313 ~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~ 392 (852)
T 4fdd_A 313 IDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 392 (852)
T ss_dssp HHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH
T ss_pred hHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH
Confidence 22 11 125778899999999877652 34677777777766666777777777776553322
Q ss_pred C----cchHHHHHhhhcccCCCchHHHHHHHHHHhccccCCC------ChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 008746 443 W----SHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ------DAPYILESLTENWEEEPSAEVRLHLLTAVMKC 512 (555)
Q Consensus 443 ~----~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~------~~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl 512 (555)
. .+.++..+.+.+ ...++.+|.+++|.+|.++.... ....++..+.+...+.+ +.||..+..++..+
T Consensus 393 ~~~~~l~~~l~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~-~~vr~~a~~aL~~l 469 (852)
T 4fdd_A 393 GMIPYLPELIPHLIQCL--SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN-KRVQEAACSAFATL 469 (852)
T ss_dssp HHGGGHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHH
Confidence 1 112233333333 34578899999999999987541 24567777777766665 99999999988887
Q ss_pred Hh
Q 008746 513 FF 514 (555)
Q Consensus 513 ~~ 514 (555)
.-
T Consensus 470 ~~ 471 (852)
T 4fdd_A 470 EE 471 (852)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 9
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.64 E-value=5.5e-14 Score=155.06 Aligned_cols=449 Identities=10% Similarity=0.055 Sum_probs=307.9
Q ss_pred HHHHHHHHhc--CCCcchhHH----HhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHH
Q 008746 48 FKKVISYMTI--GIDVSAVFG----EMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLAL 121 (555)
Q Consensus 48 l~kli~~~~~--G~d~s~lf~----~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL 121 (555)
.||+.|+... ..+-++... .+.+-+.++|..+|-++--+++.+. .++++--++..+.+-+.|+||++|..|+
T Consensus 86 ~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~~~l~~~l~~~L~~~~~~VRk~A~ 163 (618)
T 1w63_A 86 DKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMCRDLAGEVEKLLKTSNSYLRKKAA 163 (618)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4566665442 233333322 2345678999999999999998886 4677666788999999999999999999
Q ss_pred HHhcCCC--hhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc---ccCCCchHHHHHHHhc-----------
Q 008746 122 RSLCSLR--VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLN----------- 185 (555)
Q Consensus 122 ~~L~~i~--~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~---~~~~~~~~~l~~lll~----------- 185 (555)
.+++++. .|++++.+.+.+.+++.|++|.|+-.|+.++..+...+|+. + ..+++.+...|.+
T Consensus 164 ~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~ 241 (618)
T 1w63_A 164 LCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHD 241 (618)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTC
T ss_pred HHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCcccc
Confidence 9999984 58888889999999999999999999999999998777652 2 2344444444211
Q ss_pred ---CCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhc---CCCChhHHHHHHHHHHccCCCChhHH
Q 008746 186 ---DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI---KEFSEWAQCLVLELVAKYVPLDSNEI 259 (555)
Q Consensus 186 ---d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l---~~~~pw~q~~iL~~L~~~~~~~~~~~ 259 (555)
..||..+..++.+|..++..+|.. .. .+. +.+..++... ...++.....+.+.+..+.+ ++...
T Consensus 242 ~~~~~~~~~q~~il~~L~~l~~~~~~~----~~---~~~--~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~ 311 (618)
T 1w63_A 242 VSGISDPFLQVRILRLLRILGRNDDDS----SE---AMN--DILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLR 311 (618)
T ss_dssp SSSSSCHHHHHHHHHHHHHHTTTCHHH----HH---TTH--HHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHH
T ss_pred ccCCCCChHHHHHHHHHHHhCCCCHHH----HH---HHH--HHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHH
Confidence 358999999999998887765431 00 111 1344444432 22356777888888877654 33333
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCC-cccc
Q 008746 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP-FIFA 338 (555)
Q Consensus 260 ~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p-~~~~ 338 (555)
....+.+..++.+.++.|.+.|++++..+....+. .+......+...+.++|+.+|..+++.+..++.... +.+.
T Consensus 312 ~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv 387 (618)
T 1w63_A 312 VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMM 387 (618)
T ss_dssp HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHH
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHH
Confidence 45677888889998999999999888777543322 222223345566788899999999999988865321 1111
Q ss_pred cccceeeeccCCcHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcH-HHHHHHHH
Q 008746 339 SDYKHFYCQYNEPSYVKKLKLEMLTAVANE--SNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRLL 415 (555)
Q Consensus 339 ~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~~--~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~-~~~i~~ll 415 (555)
..+..+ ..+.|..+|+.++..+..+|.. .+....++.|.+.+.+.+..++.+++..+..+..++|+. ...+..+.
T Consensus 388 ~eL~~~--l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~ 465 (618)
T 1w63_A 388 KELLYF--LDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLY 465 (618)
T ss_dssp HHHHHH--HHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHH
T ss_pred HHHHHH--HHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHH
Confidence 222221 2346678999999999999874 688888999999888877677778888888888889985 45788888
Q ss_pred HHhhcc--cchhHHHHHHHHHHHHHhCCC----------Cc-chHHHHHhhhcccCCCchHHHHHHHHHHhccccCCCCh
Q 008746 416 QFLEME--KDYVTAEALVLVKDLLRKYPQ----------WS-HDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDA 482 (555)
Q Consensus 416 ~ll~~~--~~~v~~e~i~~i~~ii~~~~~----------~~-~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~~ 482 (555)
+++... .+.....++..+-+....-++ .. ..+...+.+++.....++.++..++|.++.++...+..
T Consensus 466 ~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~ 545 (618)
T 1w63_A 466 KAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT 545 (618)
T ss_dssp HHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch
Confidence 888752 222333333333333221110 11 12344566554222467889999999999988877766
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCC
Q 008746 483 PYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRP 517 (555)
Q Consensus 483 ~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p 517 (555)
.+.+..++..|..+.++++|.-+.... +++...|
T Consensus 546 ~~~l~~~L~~~~~~~d~evrdRA~~y~-~ll~~~~ 579 (618)
T 1w63_A 546 VNRIKKVVSIYGSSIDVELQQRAVEYN-ALFKKYD 579 (618)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHH-HHHHTTT
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHcCcH
Confidence 677778888887777789999988755 5555544
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.62 E-value=5e-15 Score=162.66 Aligned_cols=411 Identities=12% Similarity=0.085 Sum_probs=247.7
Q ss_pred HHHHhHcCCCChHHHHHHHHHhcCC---ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHH
Q 008746 103 NFLQRDCKDEDPMIRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (555)
Q Consensus 103 n~l~kDL~~~n~~vr~lAL~~L~~i---~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l 179 (555)
+.+++.|+++|...|..|++-+-.+ |. ++ ..+.+.+.+++.++++.+||.+.+++..+.+.+|+.. .-.++.+
T Consensus 16 ~~i~~~L~~~~~~~k~~~~~kli~~~~~G~-d~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~--~l~~n~l 91 (591)
T 2vgl_B 16 FELKAELNNEKKEKRKEAVKKVIAAMTVGK-DV-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA--IMAVNSF 91 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHTTC-CC-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH--HTTHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCCC-Ch-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH--HHHHHHH
Confidence 6677777777776666554433221 11 11 1123445567777788888888888877777666654 3345666
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHH
Q 008746 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (555)
Q Consensus 180 ~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~ 259 (555)
.+- ++|+|+.++..|+.++..+.. +. .. ...+..+.+.+.+.+|..+-.....+.++...+++..
T Consensus 92 ~kd-L~~~n~~ir~~AL~~L~~i~~--~~--------~~----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 92 VKD-CEDPNPLIRALAVRTMGCIRV--DK--------IT----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp GGG-SSSSSHHHHHHHHHHHHTCCS--GG--------GH----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHH-cCCCCHHHHHHHHHHHHcCCh--HH--------HH----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 665 577788888888777776642 11 00 1133445555667778877777777776654444433
Q ss_pred H--HHHHHHHHHhccCchHHHHHHHHHHHHhcCCcch-----hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Q 008746 260 F--DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-----VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (555)
Q Consensus 260 ~--~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~-----~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~ 332 (555)
. .+++.+..+|.+.++.|+..|+.++.++....++ +....+. .|...+.+.++-.+-..++.+..+...
T Consensus 157 ~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~----~Ll~~l~~~~~~~q~~il~~l~~l~~~ 232 (591)
T 2vgl_B 157 EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNIN----KLLTALNECTEWGQIFILDCLSNYNPK 232 (591)
T ss_dssp HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH----HHHHHHHHCCHHHHHHHHHHHHTSCCC
T ss_pred ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHH----HHHHcCCCCCchHHHHHHHHHHHhCCC
Confidence 3 5788888999999999999999999988765431 1111122 233334456666666666655433211
Q ss_pred CCccccccccee-eeccCCcHHHHHHHHHHHHHccC-----CCCHHHHHHHHHH---HhhcCCHHHHHHHHHHHHHHhcc
Q 008746 333 APFIFASDYKHF-YCQYNEPSYVKKLKLEMLTAVAN-----ESNTYEIVTELCE---YAANVDIPIARESIRAVGKIALQ 403 (555)
Q Consensus 333 ~p~~~~~~~~~f-~~~~~dd~~Ir~~aL~iL~~l~~-----~~N~~~Iv~eL~~---y~~~~d~~~~~~~i~~i~~la~~ 403 (555)
.+.....-+..+ -+..+.+..|+..+...+..+.+ ++-+..+++.+.. ++.+.|++++..++++++.++..
T Consensus 233 ~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 233 DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 111111111111 23456778899999999999864 3445544443322 44567899999999999999988
Q ss_pred cCcH-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhcc-cCCCchHHHHHHHHHHhccccCCC-
Q 008746 404 QYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISS-QNVQEPKAKAALIWMLGEYSQDMQ- 480 (555)
Q Consensus 404 ~~~~-~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~wiiGEy~~~~~- 480 (555)
+|+. ...+..+..+. +...++..+.+..+..+.. ++ ++-.++..+.. -...+++.+..++|-||..+...+
T Consensus 313 ~p~~~~~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~--~~---nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 313 RPEILKQEIKVFFVKY-NDPIYVKLEKLDIMIRLAS--QA---NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp CCSTTTTCTTTTSCCT-TSCHHHHHHHHHHHHHTCC--SS---THHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH
T ss_pred ChHHHHHHHHhheecc-CChHHHHHHHHHHHHHHCC--hh---hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh
Confidence 8763 22222221111 2224566666555444321 11 12223444320 122467888899999999887764
Q ss_pred ChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhccCCCcchhhcc
Q 008746 481 DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQVVFYGF 543 (555)
Q Consensus 481 ~~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~vl~~~~~d~d~evq~Ra 543 (555)
....+++.+.+-+...+ ..++..++.++..+...+|+.....+..+.+....+.+++++..+
T Consensus 387 ~~~~~v~~Ll~ll~~~~-~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~ 448 (591)
T 2vgl_B 387 SAERCVSTLLDLIQTKV-NYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAM 448 (591)
T ss_dssp HHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHH
Confidence 35667787877777777 788888888888887777754334455555555556667776554
No 11
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.56 E-value=1.3e-12 Score=155.40 Aligned_cols=476 Identities=12% Similarity=0.098 Sum_probs=290.9
Q ss_pred chhHHHhhhhcCCCCchhHHHHHHHHHHhcCCC-----ChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCC---hhhhH
Q 008746 62 SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVN-----PDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR---VANLV 133 (555)
Q Consensus 62 s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~-----~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~ei~ 133 (555)
++.+..++.-+.|+|...|+++--.+...+..+ ++..--++..+.+.+.|+|+.+|..|+.+++.+. .++..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 345777888888999999999977776665432 2333355677888899999999999999988752 23556
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc------c--cCCCchHHHHHHHhc-CCChHHHHHHHHHHHHHHh
Q 008746 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT------C--IDADFPPTLKHLMLN-DPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 134 ~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~------~--~~~~~~~~l~~lll~-d~d~~V~~~a~~~L~~i~~ 204 (555)
+.+.+.+.+.+.|+++.||.+|+.++..+....+.. . ..+++++.+... ++ ++++.++..|+.+|.+++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~-l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSA-IAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHH-HSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHH
Confidence 778888889999999999999999999998765542 0 014567777777 46 4889999999999999986
Q ss_pred hccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHH-HHHHHHHHHHhccCc-hHHHHHHH
Q 008746 205 LEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI-FDIMNLLEDRLQHAN-GAVVLSTI 282 (555)
Q Consensus 205 ~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~-~~i~~~l~~~L~s~~-~aV~~eai 282 (555)
..+..... .....+..++..+.+.+++.+...++.|..+....++.. ..+++.+...+.+.+ ..++..++
T Consensus 164 ~~~~~l~~--------~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 164 RQGGLLVN--------FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HTCSSCTT--------THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HhHhHHHH--------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHH
Confidence 43321100 112356677777888899999999999998875533222 234555555554332 23333334
Q ss_pred HHHHHhcCCcc-hhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccceee------ec--------
Q 008746 283 KVFLHLTLSMT-DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY------CQ-------- 347 (555)
Q Consensus 283 ~~i~~l~~~~~-~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~------~~-------- 347 (555)
.++..+....+ .+. ..+..+.+.+...+.+.++++|..++..+..++...++.+.+++..+. ..
T Consensus 236 ~~l~~l~~~~~~~~~-~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~ 314 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIG-EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD 314 (1230)
T ss_dssp HHHHHHHHHSSGGGT-TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------
T ss_pred HHHHHHHHHhHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCc
Confidence 44333221100 110 011234555666777888999999999999998877665443322100 00
Q ss_pred ----------------------------cCCcHHHHHHHHHHHHHccCCC--CHHHH----HHHHHHHhhcCCHHHHHHH
Q 008746 348 ----------------------------YNEPSYVKKLKLEMLTAVANES--NTYEI----VTELCEYAANVDIPIARES 393 (555)
Q Consensus 348 ----------------------------~~dd~~Ir~~aL~iL~~l~~~~--N~~~I----v~eL~~y~~~~d~~~~~~~ 393 (555)
.+..+.+|+.+.+.|..++... .+..+ ++.|..++.+.++++|..+
T Consensus 315 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a 394 (1230)
T 1u6g_C 315 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADV 394 (1230)
T ss_dssp ------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHH
T ss_pred ccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHH
Confidence 0112457999999998887532 23333 4445556667788899888
Q ss_pred HHHHHHHhcccCc----------------H--------HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCc-ch--
Q 008746 394 IRAVGKIALQQYD----------------V--------NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWS-HD-- 446 (555)
Q Consensus 394 i~~i~~la~~~~~----------------~--------~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~-~~-- 446 (555)
+.+++.+...... . ..+++.+.+.+......+...++..+..++...++.- ..
T Consensus 395 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~ 474 (1230)
T 1u6g_C 395 FHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP 474 (1230)
T ss_dssp HHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHH
T ss_pred HHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHH
Confidence 8888777653211 0 1244555565766666677777888888888766532 22
Q ss_pred -HHHHHhhhcccCCCchHHHHHHHHHHhccccCCC-C-----hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhc-CC-
Q 008746 447 -CIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ-D-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFK-RP- 517 (555)
Q Consensus 447 -~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~-~-----~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~-~p- 517 (555)
++..+.+.+.+......++..++-.++....... . .+.++..+...+.+.. ..++..++.++..+.-. .+
T Consensus 475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~-~~v~~~al~~l~~l~~~~~~~ 553 (1230)
T 1u6g_C 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPF-YKITSEALLVTQQLVKVIRPL 553 (1230)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHhcCc
Confidence 2222333332221123455444433333322111 1 1234555555555554 78887777666655421 11
Q ss_pred -----ch----hHHHHHHHHHHhc-cCCCcchhhccccccc
Q 008746 518 -----PE----TQKVLGAALAAGL-ADFHQVVFYGFFPPFS 548 (555)
Q Consensus 518 -----~~----~~~~l~~vl~~~~-~d~d~evq~Ra~~~l~ 548 (555)
.. ...++..++.... .|.+.+||+.|...+.
T Consensus 554 ~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg 594 (1230)
T 1u6g_C 554 DQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMG 594 (1230)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 11 2455555555553 5788999998876543
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.48 E-value=1.2e-11 Score=133.67 Aligned_cols=338 Identities=13% Similarity=0.072 Sum_probs=231.5
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhcCCCC--hHHH----HHHHHHHhHcCCCC-hHHHHHHHHHhcCCCh--hhhHH-
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNP--DLAL----LTINFLQRDCKDED-PMIRGLALRSLCSLRV--ANLVE- 134 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~--e~~~----l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~ei~~- 134 (555)
++.+++.+.+++...+..+-.++..+....+ .... =++..|.+-|.+++ +.+|..|+.+|+++.. ++...
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 7778888889999998888888877744332 2211 23678888888887 9999999999999854 33222
Q ss_pred ----HHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCC---cccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 008746 135 ----YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 135 ----~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~---~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~ 207 (555)
..++.+.+++.++++.||..|+.++..+...+|+ .+...+.++.|..++..+.++.|+..|+.+|..++...+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 3678888999999999999999999999865543 122346778888874377899999999999999987654
Q ss_pred ccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHH-----HHHHHHHHhccCchHHHHHHH
Q 008746 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTI 282 (555)
Q Consensus 208 ~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~-----i~~~l~~~L~s~~~aV~~eai 282 (555)
..... .. ...+..|+..+...++..+...+..|..+...++..... +++.+..++++.++.|...|+
T Consensus 236 ~~~~~-------~~-~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~ 307 (528)
T 4b8j_A 236 QPSFE-------QT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307 (528)
T ss_dssp CCCHH-------HH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred CCcHH-------HH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHH
Confidence 32211 11 126777778888899999999999999988665443322 466788899999999999999
Q ss_pred HHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhCCcccccccceeeeccCCcHHHHHHHHH
Q 008746 283 KVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSG-SPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLE 360 (555)
Q Consensus 283 ~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~-~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~~~~~dd~~Ir~~aL~ 360 (555)
+++..+....+.....+++ .+.+.|..++.+. ++.++..|...|..++...+. .+. .
T Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~-----------------~~~-~--- 366 (528)
T 4b8j_A 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD-----------------QIQ-A--- 366 (528)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH-----------------HHH-H---
T ss_pred HHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH-----------------HHH-H---
Confidence 9999887643322222221 2344555666655 666777766666655432110 000 0
Q ss_pred HHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcc-cCcH-H-----HHHHHHHHHhhcccchhHHHHHHHH
Q 008746 361 MLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQ-QYDV-N-----AIVDRLLQFLEMEKDYVTAEALVLV 433 (555)
Q Consensus 361 iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~-~~~~-~-----~~i~~ll~ll~~~~~~v~~e~i~~i 433 (555)
+.+. .+++.|...+.+.+++++..++.+++.++.. .+.. . ..+..+++++......+...++..+
T Consensus 367 ----~~~~----~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L 438 (528)
T 4b8j_A 367 ----VINA----GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 438 (528)
T ss_dssp ----HHHT----TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred ----HHHC----CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0001 2345556666677888888888888888765 2321 1 2466777877776666666666777
Q ss_pred HHHHHh
Q 008746 434 KDLLRK 439 (555)
Q Consensus 434 ~~ii~~ 439 (555)
.+++..
T Consensus 439 ~~l~~~ 444 (528)
T 4b8j_A 439 ENILKV 444 (528)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.48 E-value=1.9e-10 Score=131.22 Aligned_cols=516 Identities=10% Similarity=0.055 Sum_probs=303.7
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcC----CCcchhHHHhhhhcCCC-CchhHHHHHHHHHHhcCC-CC
Q 008746 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIG----IDVSAVFGEMVMCSATS-DIVLKKMCYLYVGNYAKV-NP 95 (555)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G----~d~s~lf~~vi~~~~s~-~~~~Krl~yl~l~~~~~~-~~ 95 (555)
...+|..|-+...+ +...- +..+..++..+... ...+.+++.++..+.++ +...|..+...+..+.+. .+
T Consensus 93 ~~~ik~~ll~~l~~---~~~~v-r~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~ 168 (861)
T 2bpt_A 93 KNQIKTNALTALVS---IEPRI-ANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADP 168 (861)
T ss_dssp HHHHHHHHHHHHTC---SSHHH-HHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHCC---CchHH-HHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCh
Confidence 34555555554432 22222 33333444443321 24556788888888887 888887776666555432 12
Q ss_pred h------HHHHHHHHHHhHcCCC--ChHHHHHHHHHhcCC---Chhh-----hHHHHHHHHhhccCCCChHHHHHHHHHH
Q 008746 96 D------LALLTINFLQRDCKDE--DPMIRGLALRSLCSL---RVAN-----LVEYLVGPLGLGLKDNNSYVRTVAVIGV 159 (555)
Q Consensus 96 e------~~~l~in~l~kDL~~~--n~~vr~lAL~~L~~i---~~~e-----i~~~l~~~i~~~l~d~~~~VRk~A~lal 159 (555)
+ ..--+...+.+-+.++ ++.+|..|+++++.+ .... ..+.+++.+.+.+.++++.||+.|+.++
T Consensus 169 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 169 QSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp TSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1 2234456667777887 899999999999874 1111 1245777778888999999999999999
Q ss_pred HHHhhhCCCcccC--C-CchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchH---------hhhHHh-hhccHHHH
Q 008746 160 LKLYHISAPTCID--A-DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE---------ASRERE-ALISKPVI 226 (555)
Q Consensus 160 ~kl~~~~p~~~~~--~-~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~---------~~~~~~-~ll~~~~~ 226 (555)
.++...+|+.+.. . .+++.+... +.|.|+.|+..|+..+..+.......... .++... ..+ ...+
T Consensus 249 ~~l~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il 326 (861)
T 2bpt_A 249 CKIMSKYYTFMKPYMEQALYALTIAT-MKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVV 326 (861)
T ss_dssp HHHHHHHGGGCHHHHHHTHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHH
Confidence 9999888875421 1 455555555 58899999999999998887642110000 000000 011 2245
Q ss_pred HHHHhhcCCC------ChhH-HHHHHHHHHccCCC-ChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcc-hhHH
Q 008746 227 YYLLNRIKEF------SEWA-QCLVLELVAKYVPL-DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT-DVHQ 297 (555)
Q Consensus 227 ~~L~~~l~~~------~pw~-q~~iL~~L~~~~~~-~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~-~~~~ 297 (555)
..++..+.+. +.|. +....+.|..+... .......+++.+...+++.+..+..+|+.++..+..... ....
T Consensus 327 ~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~ 406 (861)
T 2bpt_A 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRT 406 (861)
T ss_dssp HHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred HHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHH
Confidence 5666655542 3453 33444444443211 123345677788888888888899999999988875422 2112
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccc--cccc----ceee-eccCCcHHHHHHHHHHHHHccCC--
Q 008746 298 QVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIF--ASDY----KHFY-CQYNEPSYVKKLKLEMLTAVANE-- 368 (555)
Q Consensus 298 ~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~--~~~~----~~f~-~~~~dd~~Ir~~aL~iL~~l~~~-- 368 (555)
..+..+.+.+...+.+.++.+|..++..+..+....+.-+ .+++ ..+. ...+ ++.+|..+...|..++..
T Consensus 407 ~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~ 485 (861)
T 2bpt_A 407 YYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLA 485 (861)
T ss_dssp HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHhcc
Confidence 3345566667777888899999999998888776532211 1122 1111 2333 477888888877766532
Q ss_pred --------CCHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHhcccCc-HHHH----HHHHHHHhhcc------------
Q 008746 369 --------SNTYEIVTELCEYAANVD--IPIARESIRAVGKIALQQYD-VNAI----VDRLLQFLEME------------ 421 (555)
Q Consensus 369 --------~N~~~Iv~eL~~y~~~~d--~~~~~~~i~~i~~la~~~~~-~~~~----i~~ll~ll~~~------------ 421 (555)
..+..|++.|...+.+.| +.++..++.+++.++...+. ...+ +..+++.+...
T Consensus 486 ~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~ 565 (861)
T 2bpt_A 486 EATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLED 565 (861)
T ss_dssp SSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhh
Confidence 245678888888887544 67888999999999987654 2233 33344444321
Q ss_pred ---cchhHHHHHHHHHHHHHhCCC-Ccch---HHHHHhhhcccCCCch-HHHHHHHHHHhccccCC-----CChHHHHHH
Q 008746 422 ---KDYVTAEALVLVKDLLRKYPQ-WSHD---CIAVVGSISSQNVQEP-KAKAALIWMLGEYSQDM-----QDAPYILES 488 (555)
Q Consensus 422 ---~~~v~~e~i~~i~~ii~~~~~-~~~~---~~~~l~~l~~~~~~~~-~~~~~~~wiiGEy~~~~-----~~~~~~l~~ 488 (555)
...+...++..+..++...+. .... ++..+.+.+ .. .++ .++..+++.+|..+... +..+.++..
T Consensus 566 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ 643 (861)
T 2bpt_A 566 AQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLL-EK-KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPY 643 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHH-HS-TTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-cc-CCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 112233455566667766543 2222 222222222 11 123 55656666555443222 124556666
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhH----HHHHHHHHHhccC-CCcchhhcccccc
Q 008746 489 LTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQ----KVLGAALAAGLAD-FHQVVFYGFFPPF 547 (555)
Q Consensus 489 l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~----~~l~~vl~~~~~d-~d~evq~Ra~~~l 547 (555)
+.+.+..+. +.+|..++.++..+....++... .++..+++....+ .|.++|..|...+
T Consensus 644 l~~~l~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l 706 (861)
T 2bpt_A 644 LLKALNQVD-SPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVF 706 (861)
T ss_dssp HHHHHHCTT-SHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred HHHHhcccc-HHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHH
Confidence 776665555 88999988887776654433333 3333444444433 4588988765543
No 14
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.48 E-value=8.4e-13 Score=130.58 Aligned_cols=195 Identities=14% Similarity=0.019 Sum_probs=129.6
Q ss_pred HHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHH
Q 008746 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (555)
Q Consensus 101 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~ 180 (555)
.++.+.+.|.|+|+.+|..|+++|+.++.++.. +.+.+++.|+++.||..|+.++.++.. .+..+ +.+++.+.
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~----~~L~~~l~d~~~~vR~~A~~aL~~l~~-~~~~~--~~l~~~L~ 96 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQDAV----RLAIEFCSDKNYIRRDIGAFILGQIKI-CKKCE--DNVFNILN 96 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHH----HHHHHHHTCSSHHHHHHHHHHHHHSCC-CTTTH--HHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCchHH----HHHHHHHcCCCHHHHHHHHHHHHHhcc-ccccc--hHHHHHHH
Confidence 458889999999999999999999999987654 556688899999999999999998753 12222 23444555
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHH
Q 008746 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF 260 (555)
Q Consensus 181 ~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~ 260 (555)
..+++|+|+.|+.+|+.+|..+...++.. .+..+..|...+.+.+++.+...+..|..+....
T Consensus 97 ~~~~~d~~~~vr~~a~~aL~~l~~~~~~~------------~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~----- 159 (280)
T 1oyz_A 97 NMALNDKSACVRATAIESTAQRCKKNPIY------------SPKIVEQSQITAFDKSTNVRRATAFAISVINDKA----- 159 (280)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHCGGG------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-----
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCcc------------cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH-----
Confidence 43368999999999999999987543310 1124455556666777777777777777765321
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 008746 261 DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHI 328 (555)
Q Consensus 261 ~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~ 328 (555)
.++.+...+++.++.|...|+..+..++...+. +.+.|..++.++++.+|..++..+..
T Consensus 160 -~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~--------~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 160 -TIPLLINLLKDPNGDVRNWAAFAININKYDNSD--------IRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -CHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH--------HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH--------HHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 445566666777777777777777665432211 12334444555555555555555443
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.48 E-value=7.6e-12 Score=135.37 Aligned_cols=339 Identities=12% Similarity=0.088 Sum_probs=226.2
Q ss_pred chhHHHhhhhcCCCCchhHHHHHHHHHHhcCC--CChHHH----HHHHHHHhHcCCC-ChHHHHHHHHHhcCCCh--hhh
Q 008746 62 SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKV--NPDLAL----LTINFLQRDCKDE-DPMIRGLALRSLCSLRV--ANL 132 (555)
Q Consensus 62 s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~--~~e~~~----l~in~l~kDL~~~-n~~vr~lAL~~L~~i~~--~ei 132 (555)
...++.+++.+.+++...+..+-.++..++.. ++.... -++..|.+-|.++ ++.+|..|+.+|+++.. ++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 34477778888899999999998888877543 332211 2467888888887 89999999999999865 333
Q ss_pred HH-----HHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc---ccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 008746 133 VE-----YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 133 ~~-----~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~---~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~ 204 (555)
.. ..++.+.+++.++++.||..|+.++..+...+|+. +...+.++.|..+ +.+.++.|+..|+.+|..++.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL-FNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG-GGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH-hccCCHHHHHHHHHHHHHHhC
Confidence 22 34678888888999999999999999998654331 2235788889888 588999999999999999986
Q ss_pred hc-cccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHH-----HHHHHHHHHhccCchHHH
Q 008746 205 LE-ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVV 278 (555)
Q Consensus 205 ~~-~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~-----~i~~~l~~~L~s~~~aV~ 278 (555)
.. +..... .. ...+..|+..+.+.++..+...+..|..+...+++... .+++.+..++++.++.|.
T Consensus 245 ~~~~~~~~~-------~~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~ 316 (530)
T 1wa5_B 245 GKKPQPDWS-------VV-SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316 (530)
T ss_dssp CSSSCCCHH-------HH-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred CCCCCCcHH-------HH-HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhH
Confidence 54 322111 01 12566777778888999999999999998765544332 346678888999999999
Q ss_pred HHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCcHHHHHH
Q 008746 279 LSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKL 357 (555)
Q Consensus 279 ~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~~~~~dd~~Ir~~ 357 (555)
..|++++..+....+.....+++ .+.+.|..++.++++.+|..|+..|..+....++ .++.
T Consensus 317 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~-----------------~~~~- 378 (530)
T 1wa5_B 317 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE-----------------QIQA- 378 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-----------------HHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-----------------HHHH-
Confidence 99999999887543332222221 2344555666666666666666666655422110 0000
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccc-C--cH-H-----HHHHHHHHHhhcccchhHHH
Q 008746 358 KLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQ-Y--DV-N-----AIVDRLLQFLEMEKDYVTAE 428 (555)
Q Consensus 358 aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~-~--~~-~-----~~i~~ll~ll~~~~~~v~~e 428 (555)
+.+. .+++.|...+.+.+++++..++.+++.++... + .. . ..+..++.++......+...
T Consensus 379 -------~~~~----~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 447 (530)
T 1wa5_B 379 -------VIDA----NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 447 (530)
T ss_dssp -------HHHT----TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHH
T ss_pred -------HHHC----CCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence 0001 23455556666778888888888888887643 2 21 1 14556666666555555555
Q ss_pred HHHHHHHHHH
Q 008746 429 ALVLVKDLLR 438 (555)
Q Consensus 429 ~i~~i~~ii~ 438 (555)
++..+..++.
T Consensus 448 al~aL~~l~~ 457 (530)
T 1wa5_B 448 TLDALENILK 457 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.48 E-value=5.7e-12 Score=132.70 Aligned_cols=330 Identities=12% Similarity=0.035 Sum_probs=216.1
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhcC--CCChHHH-----HHHHHHHhHcCCC-ChHHHHHHHHHhcCCCh--hh---
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYAK--VNPDLAL-----LTINFLQRDCKDE-DPMIRGLALRSLCSLRV--AN--- 131 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~~--~~~e~~~-----l~in~l~kDL~~~-n~~vr~lAL~~L~~i~~--~e--- 131 (555)
++.+++.+.+++..+|..+...+..+.. .++...- -++..+.+-++++ ++.+|..|+.+++++.. ++
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5566777788888888888888877542 3433211 2467778888888 89999999999998743 32
Q ss_pred -hH-HHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc---ccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 008746 132 -LV-EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (555)
Q Consensus 132 -i~-~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~---~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~ 206 (555)
+. ..+++.+.+++.++++.||..|+.++..+...+|+. +...+.++.+..++.++.++.|+..|+.+|..++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 22 347888899999999999999999999998755432 1124678888888433589999999999999998654
Q ss_pred -cccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHH-----HHHHHHHHHhccCchHHHHH
Q 008746 207 -ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLS 280 (555)
Q Consensus 207 -~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~-----~i~~~l~~~L~s~~~aV~~e 280 (555)
+.... ... ...+..|++.+.+.++..+...+..|..+....++... .+++.+..++++.++.|...
T Consensus 182 ~~~~~~-------~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 253 (450)
T 2jdq_A 182 SPPPEF-------AKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSP 253 (450)
T ss_dssp SSCCCG-------GGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHH
T ss_pred CCCCCH-------HHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHH
Confidence 32211 112 23567777778888999999999999998865443222 35677788889999999999
Q ss_pred HHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccc----ccc-cee-eeccCCcHH
Q 008746 281 TIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFA----SDY-KHF-YCQYNEPSY 353 (555)
Q Consensus 281 ai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~----~~~-~~f-~~~~~dd~~ 353 (555)
|+.++..+....+.....+++ .+.+.|..++.++++.+|..|+..+..+....+.... ... ..+ ....+.+..
T Consensus 254 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~ 333 (450)
T 2jdq_A 254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFR 333 (450)
T ss_dssp HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHH
Confidence 999998887654332222221 2455667778777888888888888777643221111 000 011 112233455
Q ss_pred HHHHHHHHHHHccCC---CCHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 008746 354 VKKLKLEMLTAVANE---SNTY-----EIVTELCEYAANVDIPIARESIRAVGKIAL 402 (555)
Q Consensus 354 Ir~~aL~iL~~l~~~---~N~~-----~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~ 402 (555)
+|..+...|..++.. .++. .+++.|...+.+.|++++..++.+++.++.
T Consensus 334 v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 334 TRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 566655555555422 1222 133444455555555555555555555543
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.47 E-value=9.7e-12 Score=134.51 Aligned_cols=287 Identities=12% Similarity=0.050 Sum_probs=209.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc-------chhHHHhhhhcCCC-CchhHHHHHHHHHHhcCCCChHHHH-----HHHHH
Q 008746 39 GIDDSKRELFKKVISYMTIGIDV-------SAVFGEMVMCSATS-DIVLKKMCYLYVGNYAKVNPDLALL-----TINFL 105 (555)
Q Consensus 39 ~~~~~k~~~l~kli~~~~~G~d~-------s~lf~~vi~~~~s~-~~~~Krl~yl~l~~~~~~~~e~~~l-----~in~l 105 (555)
++.+.+..++..+-.+...+.+. ..+++.+++++.++ +..++..+.-++..+...+++..-. +++.|
T Consensus 99 ~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L 178 (530)
T 1wa5_B 99 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLF 178 (530)
T ss_dssp SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence 45567778876655554443222 23567778888886 8889999999999888766554222 36788
Q ss_pred HhHcCCCChHHHHHHHHHhcCCCh--hhhH-----HHHHHHHhhccCCCChHHHHHHHHHHHHHhhhC-CCc--ccCCCc
Q 008746 106 QRDCKDEDPMIRGLALRSLCSLRV--ANLV-----EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-APT--CIDADF 175 (555)
Q Consensus 106 ~kDL~~~n~~vr~lAL~~L~~i~~--~ei~-----~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~-p~~--~~~~~~ 175 (555)
.+-|.++++.+|..|+.+|+++.. ++.. ...++.+.+++.++++.||+.|+.++..+.... |.. ....+.
T Consensus 179 v~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 258 (530)
T 1wa5_B 179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA 258 (530)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGG
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhH
Confidence 888888999999999999999853 2221 235778889999999999999999999998654 321 112467
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCC
Q 008746 176 PPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLD 255 (555)
Q Consensus 176 ~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~ 255 (555)
++.|..+ +.+.|+.|+..|+.+|..++...+.. ...++....+..|+..+.+.++..+...+..|..+...+
T Consensus 259 l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~-------~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~ 330 (530)
T 1wa5_B 259 LPTLAKL-IYSMDTETLVDACWAISYLSDGPQEA-------IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330 (530)
T ss_dssp HHHHHHH-TTCCCHHHHHHHHHHHHHHHSSCHHH-------HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHHHHHhCCCHHH-------HHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence 8888887 68899999999999999998653321 111121225677888888889999999999999998765
Q ss_pred hhHHH-----HHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHH-HHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 008746 256 SNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHIL 329 (555)
Q Consensus 256 ~~~~~-----~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l-~~i~~~L~~ll~~~~~~~ry~aL~~l~~l 329 (555)
+.... .+++.+..++++.++.|..+|+.++..+....+.....++ ..+.+.|..++.+.++.+|..|+..|..+
T Consensus 331 ~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 410 (530)
T 1wa5_B 331 DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 54332 3567788889999999999999999988754332222222 23456677788888899999999999988
Q ss_pred HhhC
Q 008746 330 VMRA 333 (555)
Q Consensus 330 ~~~~ 333 (555)
+...
T Consensus 411 ~~~~ 414 (530)
T 1wa5_B 411 SSGG 414 (530)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 7653
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.46 E-value=4e-11 Score=126.23 Aligned_cols=321 Identities=14% Similarity=0.032 Sum_probs=225.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc-------c-hhHHHhhhhcCCC-CchhHHHHHHHHHHhcCCCChHHH-----HHHHH
Q 008746 39 GIDDSKRELFKKVISYMTIGIDV-------S-AVFGEMVMCSATS-DIVLKKMCYLYVGNYAKVNPDLAL-----LTINF 104 (555)
Q Consensus 39 ~~~~~k~~~l~kli~~~~~G~d~-------s-~lf~~vi~~~~s~-~~~~Krl~yl~l~~~~~~~~e~~~-----l~in~ 104 (555)
++...|..++..+-.+...+.+. . .+++.+++++.++ +..++.-+.-++..+...+++..- -++..
T Consensus 32 ~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 111 (450)
T 2jdq_A 32 KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPI 111 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHH
Confidence 44567777776665555433322 1 4566677888777 888999988888888776554321 25788
Q ss_pred HHhHcCCCChHHHHHHHHHhcCCCh--hhhH-----HHHHHHHhhccCC-CChHHHHHHHHHHHHHhhhC-CCc--ccCC
Q 008746 105 LQRDCKDEDPMIRGLALRSLCSLRV--ANLV-----EYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHIS-APT--CIDA 173 (555)
Q Consensus 105 l~kDL~~~n~~vr~lAL~~L~~i~~--~ei~-----~~l~~~i~~~l~d-~~~~VRk~A~lal~kl~~~~-p~~--~~~~ 173 (555)
|.+-++++++.+|..|+.+|+++.. ++.. ..+++.+.+++.+ +++.||+.|+.++..+.... |.. ....
T Consensus 112 L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 191 (450)
T 2jdq_A 112 FIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVS 191 (450)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTG
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 8889999999999999999999854 2221 2356777788885 79999999999999998654 432 1125
Q ss_pred CchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCC
Q 008746 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVP 253 (555)
Q Consensus 174 ~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~ 253 (555)
+.++.|..+ +.+.|+.|+..|+.+|..++...+.. ...+.....+..|+..+.+.++-.+...+..|..+..
T Consensus 192 ~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 192 PCLNVLSWL-LFVSDTDVLADACWALSYLSDGPNDK-------IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT 263 (450)
T ss_dssp GGHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSSHHH-------HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-HccCCHHHHHHHHHHHHHHHCCCcHH-------HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhh
Confidence 678888888 68899999999999999997643210 1111112256777777888888899999999999886
Q ss_pred CChhHHH-----HHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHHHHH
Q 008746 254 LDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLH 327 (555)
Q Consensus 254 ~~~~~~~-----~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~l~ 327 (555)
.++.... .+++.+..++++.++.|..+|+.++..+....+.....+++ .+.+.|..++.+.++.+|..|...+.
T Consensus 264 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 343 (450)
T 2jdq_A 264 GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 343 (450)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6554322 36778888999999999999999999887543332222332 44566777888889999999999999
Q ss_pred HHHhh-CCcccc----ccc-cee-eeccCCcHHHHHHHHHHHHHccC
Q 008746 328 ILVMR-APFIFA----SDY-KHF-YCQYNEPSYVKKLKLEMLTAVAN 367 (555)
Q Consensus 328 ~l~~~-~p~~~~----~~~-~~f-~~~~~dd~~Ir~~aL~iL~~l~~ 367 (555)
.++.. .|+... ... ..+ ....+.+..++..++..|..++.
T Consensus 344 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 344 NATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 88765 332111 111 111 12345567888888888877753
No 19
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.44 E-value=8.4e-10 Score=126.08 Aligned_cols=490 Identities=12% Similarity=0.093 Sum_probs=283.0
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCC--CchhHHHHHHHHHHhcCC-CCh-
Q 008746 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATS--DIVLKKMCYLYVGNYAKV-NPD- 96 (555)
Q Consensus 21 e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~--~~~~Krl~yl~l~~~~~~-~~e- 96 (555)
+...+|..|-+...+..+.. ..-..++..+..........+.+++.++..+.++ +...|+.+...+..+.+. .++
T Consensus 87 ~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~ 165 (876)
T 1qgr_A 87 ARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ 165 (876)
T ss_dssp HHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh
Confidence 34455666665544333222 2223334333333222245666788888888887 888888877777766543 222
Q ss_pred ---HHHHHHHHHHhHcCCC--ChHHHHHHHHHhcCCCh---hhh-----HHHHHHHHhhccCCCChHHHHHHHHHHHHHh
Q 008746 97 ---LALLTINFLQRDCKDE--DPMIRGLALRSLCSLRV---ANL-----VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLY 163 (555)
Q Consensus 97 ---~~~l~in~l~kDL~~~--n~~vr~lAL~~L~~i~~---~ei-----~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~ 163 (555)
..-.+++.+.+-+.++ ++.+|..|+++++.+.. ..+ .+.+++.+.+.+.+.++.||+.|+.++..+.
T Consensus 166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 2233456677777776 79999999999987421 111 1346777778888999999999999999999
Q ss_pred hhCCCccc---CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchH-------------hhhHHhh-hccHHHH
Q 008746 164 HISAPTCI---DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE-------------ASREREA-LISKPVI 226 (555)
Q Consensus 164 ~~~p~~~~---~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~-------------~~~~~~~-ll~~~~~ 226 (555)
..+|+.+. ...+++.+... ..|.++.|+..|+..+..+.........+ .+..... .+ ...+
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll 323 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEA-MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV 323 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHh
Confidence 88876541 12566666666 47889999999999888887542100000 0000000 00 1234
Q ss_pred HHHHhhcCC------CChhH-HHH---HHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcc-hh
Q 008746 227 YYLLNRIKE------FSEWA-QCL---VLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT-DV 295 (555)
Q Consensus 227 ~~L~~~l~~------~~pw~-q~~---iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~-~~ 295 (555)
..+++.+.. -+.|. +.. .+..+....+ ......+++.+...+++.+..+...|+.++..+..... +.
T Consensus 324 ~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~ 401 (876)
T 1qgr_A 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHH
Confidence 444454432 23463 333 3333333332 13345677777788888899999999999988875432 21
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcc--cccccc----eee-eccCCcHHHHHHHHHHHHHccCC
Q 008746 296 HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI--FASDYK----HFY-CQYNEPSYVKKLKLEMLTAVANE 368 (555)
Q Consensus 296 ~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~--~~~~~~----~f~-~~~~dd~~Ir~~aL~iL~~l~~~ 368 (555)
....+..+.+.+...++++++.+|..|...+..++...+.. ..+++. .++ ...+ +..+|..+...|..++..
T Consensus 402 ~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH
Confidence 12234556667777888888999999999999988775432 122322 111 2233 467788877777766521
Q ss_pred --------------------CCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHh------------------------
Q 008746 369 --------------------SNTYEIVTELCEYAANVD---IPIARESIRAVGKIA------------------------ 401 (555)
Q Consensus 369 --------------------~N~~~Iv~eL~~y~~~~d---~~~~~~~i~~i~~la------------------------ 401 (555)
.-+..|++.|...+.+.+ ..++..++.+++.++
T Consensus 481 ~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 560 (876)
T 1qgr_A 481 AYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQ 560 (876)
T ss_dssp HHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHH
Confidence 235667777766665432 234444444444433
Q ss_pred --------------------------------cccC-c-----HHHHHHHHHHHhhccc--chhHHHHHHHHHHHHHhCC
Q 008746 402 --------------------------------LQQY-D-----VNAIVDRLLQFLEMEK--DYVTAEALVLVKDLLRKYP 441 (555)
Q Consensus 402 --------------------------------~~~~-~-----~~~~i~~ll~ll~~~~--~~v~~e~i~~i~~ii~~~~ 441 (555)
.... + ....+..+++++.... ..+..+++..+..++...+
T Consensus 561 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~ 640 (876)
T 1qgr_A 561 VLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640 (876)
T ss_dssp HHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH
Confidence 3222 1 0123344444444331 2455555555555555322
Q ss_pred C-Ccch---HHHHHhhhcccCCCchHHHHHHHHHHhccccCCC-----ChHHHHHHHHHhhhcC-CcHHHHHHHHHHHHH
Q 008746 442 Q-WSHD---CIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ-----DAPYILESLTENWEEE-PSAEVRLHLLTAVMK 511 (555)
Q Consensus 442 ~-~~~~---~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~-----~~~~~l~~l~~~~~~e-~~~~vr~~~L~a~~K 511 (555)
. ..+. .+..+...+ ....++.++..++|.+|+.+.... ..++++..+.+.+... .+.++|..++.+++.
T Consensus 641 ~~~~~~~~~~~~~l~~~l-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~ 719 (876)
T 1qgr_A 641 GEFLKYMEAFKPFLGIGL-KNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGD 719 (876)
T ss_dssp GGGGGGHHHHHHHHHHHH-HHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH-cCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHH
Confidence 2 1121 222222222 222367788888999888654332 1456777777777652 237789999888888
Q ss_pred HHhcCC
Q 008746 512 CFFKRP 517 (555)
Q Consensus 512 l~~~~p 517 (555)
+....+
T Consensus 720 i~~~~g 725 (876)
T 1qgr_A 720 IALAIG 725 (876)
T ss_dssp HHHHHG
T ss_pred HHHHhc
Confidence 765444
No 20
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.43 E-value=8.5e-12 Score=141.18 Aligned_cols=467 Identities=12% Similarity=0.047 Sum_probs=274.5
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhh-----h--HHHHH
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----L--VEYLV 137 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~e-----i--~~~l~ 137 (555)
.+.+++.+.+++...|+.+--.+... .+.++..=++..|.+-|.++++.+|..|+.+|+++...+ + .+.++
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~--~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i 194 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQ--DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 194 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhh--hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH
Confidence 45667777777776665432222221 123444455788888888999999999999999985321 1 12456
Q ss_pred HHHhhccCC-CChHHHHHHHHHHHHHhhhCC--CcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhh
Q 008746 138 GPLGLGLKD-NNSYVRTVAVIGVLKLYHISA--PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEAS 214 (555)
Q Consensus 138 ~~i~~~l~d-~~~~VRk~A~lal~kl~~~~p--~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~ 214 (555)
+.+.+.+.+ .++.+|+.|+.++.++..... ..+.+.+.++.|..+ +.+.++.|+..|+.+|..++...+..
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~l-L~~~~~~v~~~A~~aL~nLa~~~~~~----- 268 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNM-LGSPVDSVLFHAITTLHNLLLHQEGA----- 268 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHSTTH-----
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCChhh-----
Confidence 666677754 589999999999999754211 112235678888888 68889999999999999998764321
Q ss_pred hHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHH-----HHHHHHHHHhccCchHH-HHHHHHHHHHh
Q 008746 215 REREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAV-VLSTIKVFLHL 288 (555)
Q Consensus 215 ~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~-----~i~~~l~~~L~s~~~aV-~~eai~~i~~l 288 (555)
...+.....+..|+..+...++-.+..++..|..+...+++... ..++.+..++++.++.. ...|+.++..+
T Consensus 269 --~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 269 --KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp --HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 11111112567777877777766666666666665544433222 23556667777766544 34556666555
Q ss_pred cCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcc--ccccccee-eeccCCcHHHHHHHHHHHHH
Q 008746 289 TLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI--FASDYKHF-YCQYNEPSYVKKLKLEMLTA 364 (555)
Q Consensus 289 ~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~--~~~~~~~f-~~~~~dd~~Ir~~aL~iL~~ 364 (555)
.... .....++. .+...|..++.+.++.++..++..+..++...+.. ...-+..+ -...+.+..+|..+..+|..
T Consensus 347 s~~~-~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 347 SVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp HTST-THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hcCh-HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5432 22222222 23456777788888888989999888887655431 11111111 12456778899999999999
Q ss_pred ccCCC--CHH-----HHHHHHHHHhhc-CC-HHHHHHHHHHHHHHhcccCcH---H------HHHHHHHHHhhcccc-hh
Q 008746 365 VANES--NTY-----EIVTELCEYAAN-VD-IPIARESIRAVGKIALQQYDV---N------AIVDRLLQFLEMEKD-YV 425 (555)
Q Consensus 365 l~~~~--N~~-----~Iv~eL~~y~~~-~d-~~~~~~~i~~i~~la~~~~~~---~------~~i~~ll~ll~~~~~-~v 425 (555)
++... +.. ..++.|...+.+ .+ ++++..++.+++.++...++. . ..+..+++++..... .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 98753 222 245666666655 33 489999999999998766542 1 246788888887654 78
Q ss_pred HHHHHHHHHHHHHhCCCCc----chHHHHHhhhcccCCCchHHHHHHHHHHh----------------------ccccCC
Q 008746 426 TAEALVLVKDLLRKYPQWS----HDCIAVVGSISSQNVQEPKAKAALIWMLG----------------------EYSQDM 479 (555)
Q Consensus 426 ~~e~i~~i~~ii~~~~~~~----~~~~~~l~~l~~~~~~~~~~~~~~~wiiG----------------------Ey~~~~ 479 (555)
..+++..+.++....+... ...+..+.+++.. .++.++..++|.+| ..+...
T Consensus 506 ~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~ 583 (780)
T 2z6g_A 506 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR--AHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI 583 (780)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHH--HHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHh--cchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence 8888888888864221110 1122223333211 12333444444443 322110
Q ss_pred CCh-----HHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHH-----HHHHHhccCCCcchhhcccccc
Q 008746 480 QDA-----PYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLG-----AALAAGLADFHQVVFYGFFPPF 547 (555)
Q Consensus 480 ~~~-----~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~-----~vl~~~~~d~d~evq~Ra~~~l 547 (555)
.+. ...+..+.+...... +.++..+..++..+.. .+ +....+. ..|.....+.|++||..|...|
T Consensus 584 ~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~-~~-~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL 658 (780)
T 2z6g_A 584 HNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQ-DK-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 658 (780)
T ss_dssp HHHHHHHHTCCHHHHHHGGGCSC-HHHHHHHHHHHHHHHT-SH-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred hhHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhc-CH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 000 011233444444454 9999999999888753 32 2333332 2344456788999998875543
No 21
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.42 E-value=4.4e-10 Score=128.19 Aligned_cols=433 Identities=11% Similarity=0.029 Sum_probs=260.5
Q ss_pred CCCCchhHHHHHHHHHHhcCCC-ChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCC-------------------hhhh
Q 008746 73 ATSDIVLKKMCYLYVGNYAKVN-PDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR-------------------VANL 132 (555)
Q Consensus 73 ~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------------------~~ei 132 (555)
.|+|...|+-+--++..+...+ |+........+.+ .+.++.+|..|...+.+.- .++.
T Consensus 15 ~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~ 92 (861)
T 2bpt_A 15 LSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID--ENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEA 92 (861)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC--TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHH
T ss_pred cCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHH
Confidence 4555566666666655543322 3322222222211 1235666666666655541 2334
Q ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhC-CC-cccCCCchHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhcccc
Q 008746 133 VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-AP-TCIDADFPPTLKHLMLNDP-DPQVVANCLSALQEIWSLEAST 209 (555)
Q Consensus 133 ~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~-p~-~~~~~~~~~~l~~lll~d~-d~~V~~~a~~~L~~i~~~~~~~ 209 (555)
.+.+...+.+.+.++++.||+.++.++..+.+.+ |. .. +++++.|... +.++ |+.++..|+.++..+++.-...
T Consensus 93 ~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w--~~ll~~L~~~-l~~~~~~~~r~~al~~l~~l~~~~~~~ 169 (861)
T 2bpt_A 93 KNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW--PELMKIMVDN-TGAEQPENVKRASLLALGYMCESADPQ 169 (861)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC--HHHHHHHHHH-TSTTSCHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCccccc--HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCChh
Confidence 4556667777888999999999999999998764 52 22 5566777777 4666 9999999999999998742210
Q ss_pred chHhhhHHhhhccHHHHHHHHhhcCCC--ChhHHHHHHHHHHccC---CCC---hhHHHHHHHHHHHHhccCchHHHHHH
Q 008746 210 SEEASREREALISKPVIYYLLNRIKEF--SEWAQCLVLELVAKYV---PLD---SNEIFDIMNLLEDRLQHANGAVVLST 281 (555)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~~L~~~l~~~--~pw~q~~iL~~L~~~~---~~~---~~~~~~i~~~l~~~L~s~~~aV~~ea 281 (555)
. . . ..... ...+..+...+.+. ++-.+...++.+..+. ..+ ......+++.+...+++.+..+...|
T Consensus 170 ~-~-~--~~~~~-~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a 244 (861)
T 2bpt_A 170 S-Q-A--LVSSS-NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAA 244 (861)
T ss_dssp S-S-T--TGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred h-h-H--HHHHH-HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 0 0 0 00001 12445555556666 6778888888887742 111 11223467777778888888898888
Q ss_pred HHHHHHhcCCcch-hHHHHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhC-----------------Ccccccccc
Q 008746 282 IKVFLHLTLSMTD-VHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA-----------------PFIFASDYK 342 (555)
Q Consensus 282 i~~i~~l~~~~~~-~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~-----------------p~~~~~~~~ 342 (555)
++++..+....+. +.. .+. .+.+.+...+.+.++++|..+++.+..++... +....+++.
T Consensus 245 ~~~l~~l~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (861)
T 2bpt_A 245 FGCLCKIMSKYYTFMKP-YMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIK 323 (861)
T ss_dssp HHHHHHHHHHHGGGCHH-HHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHH
Confidence 8887665432221 211 122 34445555677788899999999988776542 111111111
Q ss_pred ----eee-ecc-------CCcHHHHHHHHHHHHHccC---CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccC-c
Q 008746 343 ----HFY-CQY-------NEPSYVKKLKLEMLTAVAN---ESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQY-D 406 (555)
Q Consensus 343 ----~f~-~~~-------~dd~~Ir~~aL~iL~~l~~---~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~-~ 406 (555)
.++ +.. +++..+|..+.+.|..++. +.-+..+++.+.+.+.+.+...|..++.++|.++.... .
T Consensus 324 ~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~ 403 (861)
T 2bpt_A 324 DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKV 403 (861)
T ss_dssp HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred HHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHH
Confidence 110 111 2346789988888877754 34456677777777777888899999999999996543 2
Q ss_pred -HHH----HHHHHHHHhhcccchhHHHHHHHHHHHHHhCC------CCcchHHHHHhhhcccCCCchHHHHHHHHHHhcc
Q 008746 407 -VNA----IVDRLLQFLEMEKDYVTAEALVLVKDLLRKYP------QWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEY 475 (555)
Q Consensus 407 -~~~----~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy 475 (555)
... .+..++..+......+...+...+..+....+ .....++..+.+.+ .+ ++.++..++|.++.+
T Consensus 404 ~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l-~~--~~~v~~~a~~al~~l 480 (861)
T 2bpt_A 404 QRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL-QD--HPKVATNCSWTIINL 480 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH-TS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh-cc--ChHHHHHHHHHHHHH
Confidence 222 45555666655555566665555555544311 11122333333332 22 278888899998876
Q ss_pred ccCCC---------ChHHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHhcCCch
Q 008746 476 SQDMQ---------DAPYILESLTENWEEE-PSAEVRLHLLTAVMKCFFKRPPE 519 (555)
Q Consensus 476 ~~~~~---------~~~~~l~~l~~~~~~e-~~~~vr~~~L~a~~Kl~~~~p~~ 519 (555)
+.... ..+.++..+.+.+... .++.+|..++.+++.+....+++
T Consensus 481 ~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 481 VEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence 65431 2456677777666532 22689999999988887766644
No 22
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.42 E-value=4.7e-11 Score=141.96 Aligned_cols=462 Identities=11% Similarity=0.070 Sum_probs=284.4
Q ss_pred CChHHHHHHHHHHHHHHhcC---CC---cchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCCh-HHHHHHHHHHhHcCC
Q 008746 39 GIDDSKRELFKKVISYMTIG---ID---VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPD-LALLTINFLQRDCKD 111 (555)
Q Consensus 39 ~~~~~k~~~l~kli~~~~~G---~d---~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e-~~~l~in~l~kDL~~ 111 (555)
++.+.|..++..+.-..... .+ ...+...+++.+.+++..+|+.+...+..+...-++ ..--+++.+.+.+.|
T Consensus 18 ~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d 97 (1230)
T 1u6g_C 18 SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLS 97 (1230)
T ss_dssp SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC
Confidence 56678888887765543222 11 123455667788899999999999999988765554 233567888889999
Q ss_pred CChHHHHHHHHHhcCCC---hh---------hhHHHHHHHHhhccC-CCChHHHHHHHHHHHHHhhhCCCcccC--CCch
Q 008746 112 EDPMIRGLALRSLCSLR---VA---------NLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPTCID--ADFP 176 (555)
Q Consensus 112 ~n~~vr~lAL~~L~~i~---~~---------ei~~~l~~~i~~~l~-d~~~~VRk~A~lal~kl~~~~p~~~~~--~~~~ 176 (555)
+++.+|..|..+++.+. .+ ...+.++|.+.+++. ++++.||..|+.++..+....++.+.. +.++
T Consensus 98 ~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll 177 (1230)
T 1u6g_C 98 DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSIL 177 (1230)
T ss_dssp SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 99999999988888763 12 257888999999998 488999999999999998776665411 2345
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChh-H---HHHHHHHHHccC
Q 008746 177 PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEW-A---QCLVLELVAKYV 252 (555)
Q Consensus 177 ~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw-~---q~~iL~~L~~~~ 252 (555)
+.+... +.|+++.|+..|+.++..+....+.. ++. ..+..+++.+...++| . -+..+..+....
T Consensus 178 ~~l~~~-L~~~~~~vR~~a~~al~~l~~~~~~~----------~~~-~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 178 TCLLPQ-LTSPRLAVRKRTIIALGHLVMSCGNI----------VFV-DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp HHHGGG-GGCSSHHHHHHHHHHHHHHTTTC--------------CT-THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred HHHHHH-HcCCcHHHHHHHHHHHHHHHHhcCHH----------HHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh
Confidence 555565 57889999999999999987643321 111 1344444443322211 1 233333333332
Q ss_pred CCCh-hHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCc-chhHHHHHHHHHHHHHHHhc------------------
Q 008746 253 PLDS-NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM-TDVHQQVYERIKAPLLTLVS------------------ 312 (555)
Q Consensus 253 ~~~~-~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~-~~~~~~~l~~i~~~L~~ll~------------------ 312 (555)
+..- .....+++.+...+++.++.|...|..++..+.... .++. ..+..+.+.+...+.
T Consensus 246 ~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~ 324 (1230)
T 1u6g_C 246 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVY-PHVSTIINICLKYLTYDPNYNYDDEDEDENAMD 324 (1230)
T ss_dssp SGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHTTCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHH-HhHHHHHHHHHHHhCCCCCCCCccccccccccc
Confidence 2100 112347777777777777777666666554443221 1111 123334444433221
Q ss_pred -------------------CCCchhHHHHHHHHHHHHhhCCccccccccee-----eeccCCcHHHHHHHHHHHHHccCC
Q 008746 313 -------------------SGSPEQSYAVLSHLHILVMRAPFIFASDYKHF-----YCQYNEPSYVKKLKLEMLTAVANE 368 (555)
Q Consensus 313 -------------------~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f-----~~~~~dd~~Ir~~aL~iL~~l~~~ 368 (555)
+..+++|..|.+.+..++...|+.+.+++..+ ....+....+|..+++.+..++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 404 (1230)
T 1u6g_C 325 ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ 404 (1230)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 11245799999999998887776555544321 123455688999999887666431
Q ss_pred -------------------------CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCc-----HHHHHHHHHHHh
Q 008746 369 -------------------------SNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD-----VNAIVDRLLQFL 418 (555)
Q Consensus 369 -------------------------~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~-----~~~~i~~ll~ll 418 (555)
..+..|++-+...+.+.+...+..++..++.++...++ ...++..+++.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L 484 (1230)
T 1u6g_C 405 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSL 484 (1230)
T ss_dssp HCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHT
T ss_pred hccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHH
Confidence 11223444444557788888898999999998876553 234777888888
Q ss_pred hcccc--hhHHHHHHHHHHHHHhCC-CCc-c---hHHHHHhhhcccCCCchHHHHHHHHHHhccccCCC--------C--
Q 008746 419 EMEKD--YVTAEALVLVKDLLRKYP-QWS-H---DCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ--------D-- 481 (555)
Q Consensus 419 ~~~~~--~v~~e~i~~i~~ii~~~~-~~~-~---~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~--------~-- 481 (555)
..... .+..+++..+..++...+ +.. + .++..+.+.+ ...++.++..+++.+|+.+.... .
T Consensus 485 ~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l--~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 562 (1230)
T 1u6g_C 485 NDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV--GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562 (1230)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH--TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred cCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 76543 566666777776665432 211 1 1112222222 22345566666677766543221 1
Q ss_pred --hHHHHHHHHHhh--hcCCcHHHHHHHHHHHHHHHhcC
Q 008746 482 --APYILESLTENW--EEEPSAEVRLHLLTAVMKCFFKR 516 (555)
Q Consensus 482 --~~~~l~~l~~~~--~~e~~~~vr~~~L~a~~Kl~~~~ 516 (555)
.+.++..+...+ .+.+ +++|..++.+++.+....
T Consensus 563 ~~~~~ll~~ll~~l~~~d~~-~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 563 PYIKDLFTCTIKRLKAADID-QEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHHHHHHHHHHHHSCSSSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHh
Confidence 345666667666 4455 899999999888887654
No 23
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.42 E-value=5e-11 Score=134.89 Aligned_cols=433 Identities=11% Similarity=0.056 Sum_probs=269.8
Q ss_pred HHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc--cc-CCCchHH
Q 008746 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT--CI-DADFPPT 178 (555)
Q Consensus 102 in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~--~~-~~~~~~~ 178 (555)
+..+.++|.++++.+|..|++.+......++....++.+.+++.++++.||..|+.++..+....+.. +. .++.++.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 57888999999999999999999877667777888999999999999999999999999997633211 11 1356777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhH
Q 008746 179 LKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE 258 (555)
Q Consensus 179 l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~ 258 (555)
|..+|.++.|+.++.+|+.+|..+...... ...+.....+..|+..+...++-.|...+..|..+...+++.
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--------~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHHREG--------LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCchh--------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 777754466999999999999998764211 111111235777888888889999999999999886443222
Q ss_pred H-----HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCch-hHHHHHHHHHHHHh
Q 008746 259 I-----FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPE-QSYAVLSHLHILVM 331 (555)
Q Consensus 259 ~-----~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~-~ry~aL~~l~~l~~ 331 (555)
. ...++.+..++++.+..|...|+.++..+....++.+..+.. .....|..++.+.+++ .+..+...+..+..
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 1 235677888898888777777766665554322222222211 2344566777655544 45566666665543
Q ss_pred hCCcc----cccc-ccee-eeccCCcHHHHHHHHHHHHHccCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 008746 332 RAPFI----FASD-YKHF-YCQYNEPSYVKKLKLEMLTAVANES----NTYEIVTELCEYAANVDIPIARESIRAVGKIA 401 (555)
Q Consensus 332 ~~p~~----~~~~-~~~f-~~~~~dd~~Ir~~aL~iL~~l~~~~----N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la 401 (555)
.+.. .... +..+ ....+.+..+++.++..|..++... ....+++.|...+.+.|++++..++.+++.++
T Consensus 349 -~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 349 -CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp -STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred -ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3221 1111 1111 1234556789999999999987543 46778899999998899999999999999998
Q ss_pred cccCcHH------HHHHHHHHHhhcccc--hhHHHHHHHHHHHHHhCCCCc--------chHHHHHhhhcccCCCchHHH
Q 008746 402 LQQYDVN------AIVDRLLQFLEMEKD--YVTAEALVLVKDLLRKYPQWS--------HDCIAVVGSISSQNVQEPKAK 465 (555)
Q Consensus 402 ~~~~~~~------~~i~~ll~ll~~~~~--~v~~e~i~~i~~ii~~~~~~~--------~~~~~~l~~l~~~~~~~~~~~ 465 (555)
...+... ..++.+++++...++ .+...++..+.+|....++.. ...+..+.+++ ..-..+.++
T Consensus 428 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~~~~~v~ 506 (780)
T 2z6g_A 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLI 506 (780)
T ss_dssp SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTT-STTCCHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHh-cCCChHHHH
Confidence 7643311 257888888876432 677777777777755444421 01123344444 222345889
Q ss_pred HHHHHHHhccccCCC--------C-hHHHHHHHHHh----------------hhcC-CcHHHHHHHHHHHHHHHhcCCch
Q 008746 466 AALIWMLGEYSQDMQ--------D-APYILESLTEN----------------WEEE-PSAEVRLHLLTAVMKCFFKRPPE 519 (555)
Q Consensus 466 ~~~~wiiGEy~~~~~--------~-~~~~l~~l~~~----------------~~~e-~~~~vr~~~L~a~~Kl~~~~p~~ 519 (555)
..++|.+|..+.... + .+.+++.+... +... .+.+++..++.++..+.. .+ .
T Consensus 507 ~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~-~~-~ 584 (780)
T 2z6g_A 507 KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR-DI-H 584 (780)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT-SH-H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc-Ch-h
Confidence 999999998764211 1 12222222211 1111 125677778888887753 33 2
Q ss_pred hHHHHH-----HHHHHhccCCCcchhhccccc
Q 008746 520 TQKVLG-----AALAAGLADFHQVVFYGFFPP 546 (555)
Q Consensus 520 ~~~~l~-----~vl~~~~~d~d~evq~Ra~~~ 546 (555)
.+..+. ..|-....+.+++||..|...
T Consensus 585 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~a 616 (780)
T 2z6g_A 585 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 616 (780)
T ss_dssp HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 222221 233344467788898886653
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.39 E-value=1.8e-10 Score=124.44 Aligned_cols=285 Identities=14% Similarity=0.064 Sum_probs=206.9
Q ss_pred CChHHHHHHHHHHHHHHhcCCC--c------chhHHHhhhhcCCCC-chhHHHHHHHHHHhcCCCChHHHH-----HHHH
Q 008746 39 GIDDSKRELFKKVISYMTIGID--V------SAVFGEMVMCSATSD-IVLKKMCYLYVGNYAKVNPDLALL-----TINF 104 (555)
Q Consensus 39 ~~~~~k~~~l~kli~~~~~G~d--~------s~lf~~vi~~~~s~~-~~~Krl~yl~l~~~~~~~~e~~~l-----~in~ 104 (555)
++.+.+..++..+-.+.. |.+ . ..+++.+++++.+++ ..++..+.-++..+...+++.... ++..
T Consensus 86 ~~~~~~~~A~~~L~~l~s-~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~ 164 (528)
T 4b8j_A 86 DDNNLQLEATTQFRKLLS-IERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI 164 (528)
T ss_dssp SCHHHHHHHHHHHHHHHT-CSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHhc-CCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHH
Confidence 445677777755444443 432 1 124666778888776 889999988998888766664322 5788
Q ss_pred HHhHcCCCChHHHHHHHHHhcCCCh--hhhHH-----HHHHHHhhcc-CCCChHHHHHHHHHHHHHhhhCCCcc--cCCC
Q 008746 105 LQRDCKDEDPMIRGLALRSLCSLRV--ANLVE-----YLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTC--IDAD 174 (555)
Q Consensus 105 l~kDL~~~n~~vr~lAL~~L~~i~~--~ei~~-----~l~~~i~~~l-~d~~~~VRk~A~lal~kl~~~~p~~~--~~~~ 174 (555)
|.+-|.++++.+|..|+.+|+++.. ++... ..++.+.+++ .++++.||+.|+.++..+....|... ...+
T Consensus 165 L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 244 (528)
T 4b8j_A 165 FVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP 244 (528)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Confidence 8899999999999999999999843 22211 2467777888 78899999999999999987654421 1256
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCC
Q 008746 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL 254 (555)
Q Consensus 175 ~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~ 254 (555)
.++.|..+ +.+.|+.|+..|+.+|..++...+.. ...++....+..|+..+...++..+...+..|..+...
T Consensus 245 ~l~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~-------~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 316 (528)
T 4b8j_A 245 ALPALARL-IHSNDEEVLTDACWALSYLSDGTNDK-------IQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG 316 (528)
T ss_dssp HHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSCHHH-------HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHH-------HHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC
Confidence 78888888 68999999999999999997643310 01112222567788888889999999999999999876
Q ss_pred ChhHHH-----HHHHHHHHHhccC-chHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHHHHH
Q 008746 255 DSNEIF-----DIMNLLEDRLQHA-NGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLH 327 (555)
Q Consensus 255 ~~~~~~-----~i~~~l~~~L~s~-~~aV~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~l~ 327 (555)
++.... .+++.+..++++. ++.|..+|+.++..+....+.....++. .+.+.|..++.+.++.++..|+..|.
T Consensus 317 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~ 396 (528)
T 4b8j_A 317 DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAIS 396 (528)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 554332 2467788888888 8999999999998887543322222222 44566778888888999999999998
Q ss_pred HHHhh
Q 008746 328 ILVMR 332 (555)
Q Consensus 328 ~l~~~ 332 (555)
.++..
T Consensus 397 nl~~~ 401 (528)
T 4b8j_A 397 NATSG 401 (528)
T ss_dssp HHHHH
T ss_pred HHHcC
Confidence 88765
No 25
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.37 E-value=1.3e-10 Score=128.72 Aligned_cols=433 Identities=11% Similarity=0.041 Sum_probs=268.7
Q ss_pred HHHHHHHhHcCCCChHHHHHHHHHhcCCChhh-----hH--HHHHHHHhhccCC-CChHHHHHHHHHHHHHhhhCC--Cc
Q 008746 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----LV--EYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISA--PT 169 (555)
Q Consensus 100 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~e-----i~--~~l~~~i~~~l~d-~~~~VRk~A~lal~kl~~~~p--~~ 169 (555)
-++..|.+-|.++++.+|..|+.+|+++...+ +. +..++.+.+.+.+ +++.||+.|+.++..+..... ..
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 93 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 93 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence 44677777888899999999999998874321 11 2456777777765 489999999999987754211 11
Q ss_pred ccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 008746 170 CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVA 249 (555)
Q Consensus 170 ~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~ 249 (555)
+.+.+.++.|..+ +.++|+.|+..|+.+|..++..++.. ...+.....+..|++.+...++-.+...+..|.
T Consensus 94 i~~~g~i~~Lv~l-L~~~~~~v~~~A~~aL~nL~~~~~~~-------~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 165 (644)
T 2z6h_A 94 IFKSGGIPALVKM-LGSPVDSVLFYAITTLHNLLLHQEGA-------KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165 (644)
T ss_dssp HHTTTHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHHSTTH-------HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHH-HhCCCHHHHHHHHHHHHHHHhCcchh-------HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHH
Confidence 2235678888888 68889999999999999998764321 111121235777888888878777777777777
Q ss_pred ccCCCChhHHHH-----HHHHHHHHhccCc-hHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHH
Q 008746 250 KYVPLDSNEIFD-----IMNLLEDRLQHAN-GAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAV 322 (555)
Q Consensus 250 ~~~~~~~~~~~~-----i~~~l~~~L~s~~-~aV~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~a 322 (555)
.+...+++.... .++.+..++++.+ ..++..|++++..+.... ..+..+++ ...+.|..++.+.++.++..+
T Consensus 166 ~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a 244 (644)
T 2z6h_A 166 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNC 244 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT-THHHHHHHTTHHHHHHTTTTCSCHHHHHHH
T ss_pred HHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 776544443322 3566777777654 456777888887776432 22333332 245567778888889999999
Q ss_pred HHHHHHHHhhCCcc--ccccccee-eeccCCcHHHHHHHHHHHHHccCCC--CHHH-----HHHHHHHHhhcC-C-HHHH
Q 008746 323 LSHLHILVMRAPFI--FASDYKHF-YCQYNEPSYVKKLKLEMLTAVANES--NTYE-----IVTELCEYAANV-D-IPIA 390 (555)
Q Consensus 323 L~~l~~l~~~~p~~--~~~~~~~f-~~~~~dd~~Ir~~aL~iL~~l~~~~--N~~~-----Iv~eL~~y~~~~-d-~~~~ 390 (555)
+..+..+....+.. ...-+..+ ....+++..++..+...|..++..+ |... .++.|..++.+. + ++++
T Consensus 245 ~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 245 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 99998887654431 11111111 1345677889999999999998753 2222 456677777663 3 7899
Q ss_pred HHHHHHHHHHhcccCcH---------HHHHHHHHHHhhccc-chhHHHHHHHHHHHHHhCCCCc----chHHHHHhhhcc
Q 008746 391 RESIRAVGKIALQQYDV---------NAIVDRLLQFLEMEK-DYVTAEALVLVKDLLRKYPQWS----HDCIAVVGSISS 456 (555)
Q Consensus 391 ~~~i~~i~~la~~~~~~---------~~~i~~ll~ll~~~~-~~v~~e~i~~i~~ii~~~~~~~----~~~~~~l~~l~~ 456 (555)
..++.+++.++...++. ...+..++++|.... ..+..+++..+.++........ ...+..+.+++.
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~ 404 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHh
Confidence 99999999998765531 125788888888764 3677788888888765322210 112222333331
Q ss_pred cCCCchHHHHHHHHHHhc--cccCCCChHH--------------------------HHHHHHHhhhcCCcHHHHHHHHHH
Q 008746 457 QNVQEPKAKAALIWMLGE--YSQDMQDAPY--------------------------ILESLTENWEEEPSAEVRLHLLTA 508 (555)
Q Consensus 457 ~~~~~~~~~~~~~wiiGE--y~~~~~~~~~--------------------------~l~~l~~~~~~e~~~~vr~~~L~a 508 (555)
..++.++..++|.+|. +..... ..+ .+..+.+-..... ++++..+..+
T Consensus 405 --~~~~~vr~~a~~al~n~~~~~~~~-~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~a 480 (644)
T 2z6h_A 405 --RAHQDTQRRTSMGGTQQQFVEGVR-MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGV 480 (644)
T ss_dssp --HHHHHHTTC----------CCSSC-HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHH
T ss_pred --ccchhhhhHhhhccccchhccccc-HHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCC-HHHHHHHHHH
Confidence 1233444555555554 221110 011 1223333333444 8899999999
Q ss_pred HHHHHhcCCchhHHHHH-----HHHHHhccCCCcchhhcccccc
Q 008746 509 VMKCFFKRPPETQKVLG-----AALAAGLADFHQVVFYGFFPPF 547 (555)
Q Consensus 509 ~~Kl~~~~p~~~~~~l~-----~vl~~~~~d~d~evq~Ra~~~l 547 (555)
+.++... + +....+. ..|.....+.|++||..|...|
T Consensus 481 L~~l~~~-~-~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL 522 (644)
T 2z6h_A 481 LCELAQD-K-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 522 (644)
T ss_dssp HHHHHTS-H-HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHcC-H-HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHH
Confidence 8887643 2 2333332 2455556788999998766543
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.37 E-value=1.5e-10 Score=124.52 Aligned_cols=436 Identities=11% Similarity=0.045 Sum_probs=266.9
Q ss_pred ChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhh-----hH--HHHHHHHhhccCC-CChHHHHHHHHHHHHHhhhC
Q 008746 95 PDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----LV--EYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHIS 166 (555)
Q Consensus 95 ~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~e-----i~--~~l~~~i~~~l~d-~~~~VRk~A~lal~kl~~~~ 166 (555)
++...-++..+.+-|.++++.+|..|+.+|+++...+ +. +..++.+.+.+.+ +++.+|+.|+.++.++....
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 3343445788888888999999999999999874321 12 2466777777754 58999999999999986421
Q ss_pred C--CcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHH
Q 008746 167 A--PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLV 244 (555)
Q Consensus 167 p--~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~i 244 (555)
. ..+.+.+.++.|.++ ++++|+.|+..|+.+|..++..++.. ...+.....+..|++.+...++-.+...
T Consensus 92 ~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 163 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKM-LGSPVDSVLFYAITTLHNLLLHQEGA-------KMAVRLAGGLQKMVALLNKTNVKFLAIT 163 (529)
T ss_dssp HHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHCTTH-------HHHHHHHTHHHHHHHGGGCCCHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCCcch-------HHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 1 111235678888888 68899999999999999998764421 1111222357778888888777777777
Q ss_pred HHHHHccCCCChhHHH-----HHHHHHHHHhccCchH-HHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCch
Q 008746 245 LELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGA-VVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPE 317 (555)
Q Consensus 245 L~~L~~~~~~~~~~~~-----~i~~~l~~~L~s~~~a-V~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~ 317 (555)
...|..+...+++... ..++.+..++++.++. +...+.+++..+.... .....+.+ ...+.|..++.+.++.
T Consensus 164 ~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~ll~~~~~~ 242 (529)
T 1jdh_A 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQR 242 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTTTSSCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhCCChH
Confidence 7777776654443322 2345566677665544 5556677776776432 22222221 3455677788888889
Q ss_pred hHHHHHHHHHHHHhhCCcc--ccccccee-eeccCCcHHHHHHHHHHHHHccCCC--CHHH-----HHHHHHHHhhc--C
Q 008746 318 QSYAVLSHLHILVMRAPFI--FASDYKHF-YCQYNEPSYVKKLKLEMLTAVANES--NTYE-----IVTELCEYAAN--V 385 (555)
Q Consensus 318 ~ry~aL~~l~~l~~~~p~~--~~~~~~~f-~~~~~dd~~Ir~~aL~iL~~l~~~~--N~~~-----Iv~eL~~y~~~--~ 385 (555)
++..++..+..+....+.. ...-+..+ ....++++.++..+...|..++..+ +... .++.|.+.+.+ .
T Consensus 243 ~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~ 322 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322 (529)
T ss_dssp HHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCC
Confidence 9999999988887654431 11111111 1235677889999999999998753 3332 35566666654 2
Q ss_pred CHHHHHHHHHHHHHHhcccCcHH---------HHHHHHHHHhhcccc-hhHHHHHHHHHHHHHhCCCCcc-----hHHHH
Q 008746 386 DIPIARESIRAVGKIALQQYDVN---------AIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQWSH-----DCIAV 450 (555)
Q Consensus 386 d~~~~~~~i~~i~~la~~~~~~~---------~~i~~ll~ll~~~~~-~v~~e~i~~i~~ii~~~~~~~~-----~~~~~ 450 (555)
+++++..++.+++.++...+... ..+..+++++....+ .+..+++..+.++... ++.+. ..+..
T Consensus 323 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~ 401 (529)
T 1jdh_A 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPR 401 (529)
T ss_dssp CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHH
Confidence 47899999999999987655421 136778888887653 6777887788887653 22221 12223
Q ss_pred HhhhcccCCCchHHHHHHHHHHhc--cccCCCChHH--------------------------HHHHHHHhhhcCCcHHHH
Q 008746 451 VGSISSQNVQEPKAKAALIWMLGE--YSQDMQDAPY--------------------------ILESLTENWEEEPSAEVR 502 (555)
Q Consensus 451 l~~l~~~~~~~~~~~~~~~wiiGE--y~~~~~~~~~--------------------------~l~~l~~~~~~e~~~~vr 502 (555)
+.+++ ...+++++..++|.++. +..... ..+ .+..+.+-..+.. ++++
T Consensus 402 L~~ll--~~~~~~v~~~a~~~l~n~~~~~~~~-~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~-~~v~ 477 (529)
T 1jdh_A 402 LVQLL--VRAHQDTQRRTSMGGTQQQFVEGVR-MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQ 477 (529)
T ss_dssp HHHHH--HHHHHHHC-----------CBTTBC-HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSC-HHHH
T ss_pred HHHHH--HHHhHHHHHHHhcccCchhhhcccc-HHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCc-hHHH
Confidence 33333 12356677778887765 322110 111 1123333333444 8999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHH-----HHHHHhccCCCcchhhccccc
Q 008746 503 LHLLTAVMKCFFKRPPETQKVLG-----AALAAGLADFHQVVFYGFFPP 546 (555)
Q Consensus 503 ~~~L~a~~Kl~~~~p~~~~~~l~-----~vl~~~~~d~d~evq~Ra~~~ 546 (555)
.....++..+.. .+ +....+. ..|.....+.|++||.+|..-
T Consensus 478 ~~a~~~l~~l~~-~~-~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~a 524 (529)
T 1jdh_A 478 RVAAGVLCELAQ-DK-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 524 (529)
T ss_dssp HHHHHHHHHHTT-SH-HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CH-HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHH
Confidence 998888888753 22 2222221 334555688999999987653
No 27
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.35 E-value=2.7e-10 Score=120.03 Aligned_cols=190 Identities=12% Similarity=0.068 Sum_probs=127.2
Q ss_pred hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhC-CC-cccCCCchHHHHHHHhcCC--ChHHHHHHHHHHHHHHhh
Q 008746 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-AP-TCIDADFPPTLKHLMLNDP--DPQVVANCLSALQEIWSL 205 (555)
Q Consensus 130 ~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~-p~-~~~~~~~~~~l~~lll~d~--d~~V~~~a~~~L~~i~~~ 205 (555)
++..+.+...+.+.+.++++.| ++++.++..+.+.+ |+ .. +++++.+... +.++ |+.++..|+.+|..+++.
T Consensus 85 ~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w--~~ll~~L~~~-l~~~~~~~~~r~~al~~l~~l~~~ 160 (462)
T 1ibr_B 85 ANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQW--PELIPQLVAN-VTNPNSTEHMKESTLEAIGYICQD 160 (462)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC--TTHHHHHHHH-HHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccccc--HHHHHHHHHH-hccCCCCHHHHHHHHHHHHHHHHh
Confidence 3444556666777888888999 99999999998764 53 33 7788888887 4676 999999999999888653
Q ss_pred ccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccC--chHHHHHHHH
Q 008746 206 EASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHA--NGAVVLSTIK 283 (555)
Q Consensus 206 ~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~--~~aV~~eai~ 283 (555)
... ..+ ......+++.+...+++. ++.|..+|++
T Consensus 161 ~~~----------~~~----------------------------------~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~ 196 (462)
T 1ibr_B 161 IDP----------EQL----------------------------------QDKSNEILTAIIQGMRKEEPSNNVKLAATN 196 (462)
T ss_dssp SCG----------GGT----------------------------------GGGHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred CCc----------hhh----------------------------------HhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 100 000 011123455556666666 6778888888
Q ss_pred HHHHhcCCcch-hH-HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccc-eee-----eccCCcHHHH
Q 008746 284 VFLHLTLSMTD-VH-QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK-HFY-----CQYNEPSYVK 355 (555)
Q Consensus 284 ~i~~l~~~~~~-~~-~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~-~f~-----~~~~dd~~Ir 355 (555)
++..+.....+ .. ....+.+...+..++.+.++++|-.+++.+..++..+|+.+.+|+. .++ +..+.+..+|
T Consensus 197 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~ 276 (462)
T 1ibr_B 197 ALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVA 276 (462)
T ss_dssp HHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 87764322110 00 0011122344555677788999999999999999999888877766 332 2356677889
Q ss_pred HHHHHHHHHccC
Q 008746 356 KLKLEMLTAVAN 367 (555)
Q Consensus 356 ~~aL~iL~~l~~ 367 (555)
..+++.+..++.
T Consensus 277 ~~a~~~l~~~~~ 288 (462)
T 1ibr_B 277 LQGIEFWSNVCD 288 (462)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988877764
No 28
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.34 E-value=9.9e-10 Score=125.49 Aligned_cols=436 Identities=12% Similarity=0.094 Sum_probs=268.9
Q ss_pred HHhhhhcCCCCchhHHHHHHHHHHhcCCC-ChHHHHHHHHHHhHcCC--CChHHHHHHHHHhcCC---------------
Q 008746 66 GEMVMCSATSDIVLKKMCYLYVGNYAKVN-PDLALLTINFLQRDCKD--EDPMIRGLALRSLCSL--------------- 127 (555)
Q Consensus 66 ~~vi~~~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~in~l~kDL~~--~n~~vr~lAL~~L~~i--------------- 127 (555)
.+++....++|.+.|+-+-.++..+...+ |+.. ..+..-+.+ .++.+|..|...+.+.
T Consensus 4 ~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~----~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFL----VELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHH----HHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 34455556777778888877777664422 3332 223333333 4678888877776652
Q ss_pred ---ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhC-C-CcccCCCchHHHHHHHhcCC--ChHHHHHHHHHHH
Q 008746 128 ---RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-A-PTCIDADFPPTLKHLMLNDP--DPQVVANCLSALQ 200 (555)
Q Consensus 128 ---~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~-p-~~~~~~~~~~~l~~lll~d~--d~~V~~~a~~~L~ 200 (555)
-.++....+...+.+++.++++.+ +.++.++..+.+.+ | +.. +++++.+... ++++ |+.++..++.++.
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w--~~ll~~l~~~-l~~~~~~~~~r~~al~~l~ 155 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQW--PELIPQLVAN-VTNPNSTEHMKESTLEAIG 155 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCC--TTHHHHHHHH-HHCTTCCHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCccccc--HHHHHHHHHH-HhCCCCCHHHHHHHHHHHH
Confidence 123444455666778888888889 99999999988754 4 333 7788888887 4777 9999999999999
Q ss_pred HHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCC--ChhHHHHHHHHHHccCCCCh------hHHHHHHHHHHHHhcc
Q 008746 201 EIWSLEASTSEEASREREALISKPVIYYLLNRIKEF--SEWAQCLVLELVAKYVPLDS------NEIFDIMNLLEDRLQH 272 (555)
Q Consensus 201 ~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~--~pw~q~~iL~~L~~~~~~~~------~~~~~i~~~l~~~L~s 272 (555)
.+.+.-.. +...-.....+..+...+.+. ++-.+...++.|..+...-+ .....+++.+...+++
T Consensus 156 ~l~~~~~~-------~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 228 (876)
T 1qgr_A 156 YICQDIDP-------EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (876)
T ss_dssp HHHHHSCH-------HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCH-------hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 98764210 000001112444555556665 56678888888877432111 1112467777777888
Q ss_pred CchHHHHHHHHHHHHhcCCcch-hHHHHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhC----------------C
Q 008746 273 ANGAVVLSTIKVFLHLTLSMTD-VHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA----------------P 334 (555)
Q Consensus 273 ~~~aV~~eai~~i~~l~~~~~~-~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~----------------p 334 (555)
.+..|...|++++..+....+. +.. .+. .+.+.+...+.+.+++++..+++.+..++... |
T Consensus 229 ~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ 307 (876)
T 1qgr_A 229 PDTRVRVAALQNLVKIMSLYYQYMET-YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP 307 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHSGGGCHH-HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCc
Confidence 8888888888887665432221 111 122 34444555556677889999998887776531 1
Q ss_pred -----ccccccccee-------eec-----cCCcHHHHHHHHHHHHHccC---CCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 008746 335 -----FIFASDYKHF-------YCQ-----YNEPSYVKKLKLEMLTAVAN---ESNTYEIVTELCEYAANVDIPIARESI 394 (555)
Q Consensus 335 -----~~~~~~~~~f-------~~~-----~~dd~~Ir~~aL~iL~~l~~---~~N~~~Iv~eL~~y~~~~d~~~~~~~i 394 (555)
....+++..+ ... .+++..+|+.+.+.|..++. +.-+..+++.+...+.+.+...|..++
T Consensus 308 ~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~ 387 (876)
T 1qgr_A 308 EHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387 (876)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHH
Confidence 0111111110 011 13457889888888877653 334566777777777888899999999
Q ss_pred HHHHHHhcccC-c-HH----HHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCC---CcchHHHHHhhhcc--cCCCchH
Q 008746 395 RAVGKIALQQY-D-VN----AIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQ---WSHDCIAVVGSISS--QNVQEPK 463 (555)
Q Consensus 395 ~~i~~la~~~~-~-~~----~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~---~~~~~~~~l~~l~~--~~~~~~~ 463 (555)
.++|.++...+ + .. ..+..++..+......+...++..+..+....+. ..+..-.++..++. .+ .+.
T Consensus 388 ~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~ 465 (876)
T 1qgr_A 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPR 465 (876)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHH
Confidence 99999997654 3 12 3466667777666666777777777777776442 11222223333321 22 377
Q ss_pred HHHHHHHHHhccccC-------------------CCChHHHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHhcCCch
Q 008746 464 AKAALIWMLGEYSQD-------------------MQDAPYILESLTENWEEEP--SAEVRLHLLTAVMKCFFKRPPE 519 (555)
Q Consensus 464 ~~~~~~wiiGEy~~~-------------------~~~~~~~l~~l~~~~~~e~--~~~vr~~~L~a~~Kl~~~~p~~ 519 (555)
++..++|.+|.++.. .+..+.++..+...+...+ +..+|..++.++..+....+.+
T Consensus 466 v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 542 (876)
T 1qgr_A 466 VASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD 542 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh
Confidence 888889998876532 1335667777776654431 2578888888888887766543
No 29
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.32 E-value=6.3e-11 Score=111.80 Aligned_cols=185 Identities=18% Similarity=0.152 Sum_probs=132.3
Q ss_pred HHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHH
Q 008746 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKH 181 (555)
Q Consensus 102 in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~ 181 (555)
++.+.+.|.|+++.+|..|+..|+.++.++..+. +.+++.|+++.||..|+.++.++.. ++..+.|..
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~----L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~ 88 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEP----LIKALKDEDAWVRRAAADALGQIGD--------ERAVEPLIK 88 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH----HHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHH----HHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHHHHHH
Confidence 4677777888888888888888888888665544 4467788888888888888888741 345677777
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHH
Q 008746 182 LMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD 261 (555)
Q Consensus 182 lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~ 261 (555)
+ ++|+|+.|+..|+.+|..+... ..+..|...+.+.++..+..++..|..+.. ++
T Consensus 89 ~-l~~~~~~vr~~a~~aL~~~~~~------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~~---- 143 (211)
T 3ltm_A 89 A-LKDEDGWVRQSAAVALGQIGDE------------------RAVEPLIKALKDEDWFVRIAAAFALGEIGD--ER---- 143 (211)
T ss_dssp H-TTCSSHHHHHHHHHHHHHHCCG------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--GG----
T ss_pred H-HcCCCHHHHHHHHHHHHHhCcH------------------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--HH----
Confidence 7 5888888888888888876431 134455566778888888888888888753 22
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhC
Q 008746 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (555)
Q Consensus 262 i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~ 333 (555)
.++.+..++++.++.|...|+.++..+... .....|..++.++++.+|..|.+.|..+-...
T Consensus 144 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 144 AVEPLIKALKDEDGWVRQSAADALGEIGGE----------RVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCSH----------HHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCch----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 455667778888888888888888877542 12334555667788888888888887665443
No 30
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.32 E-value=1.4e-10 Score=114.36 Aligned_cols=222 Identities=14% Similarity=0.069 Sum_probs=167.0
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCCh-hhhHHHHHHHHh-h
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRV-ANLVEYLVGPLG-L 142 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~ei~~~l~~~i~-~ 142 (555)
...+++.+.+++..+|..+.-.+.... +++ +++.+.+-+.|+++.+|..|+.+|+.++. ++..+.+++.+. .
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~--~~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG--GQD----AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNM 98 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC--CHH----HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC--Cch----HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 566778888899999988888888775 232 45788888999999999999999999984 445555666666 4
Q ss_pred ccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhcc
Q 008746 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALIS 222 (555)
Q Consensus 143 ~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~ 222 (555)
+++|+++.||..|+.++.++...+|... +..++.+..+ ++|+|+.|+.+|+.+|..+....
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~--~~~~~~L~~~-l~d~~~~vR~~a~~aL~~~~~~~---------------- 159 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYS--PKIVEQSQIT-AFDKSTNVRRATAFAISVINDKA---------------- 159 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHH-TTCSCHHHHHHHHHHHHTC---C----------------
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCccc--HHHHHHHHHH-hhCCCHHHHHHHHHHHHhcCCHH----------------
Confidence 5789999999999999999986655432 4567888887 69999999999999998765321
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 008746 223 KPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYER 302 (555)
Q Consensus 223 ~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~ 302 (555)
.+..|+..+.+.+++.+...+..|..+...++ ..++.+...+++.++.|..+|+.++..++...
T Consensus 160 --~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~---------- 223 (280)
T 1oyz_A 160 --TIPLLINLLKDPNGDVRNWAAFAININKYDNS----DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR---------- 223 (280)
T ss_dssp --CHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH----HHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGG----------
T ss_pred --HHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH----HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHh----------
Confidence 23455566778999999999999998865444 36677888889999999999999998886321
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHH
Q 008746 303 IKAPLLTLVSSGSPEQSYAVLSHLHIL 329 (555)
Q Consensus 303 i~~~L~~ll~~~~~~~ry~aL~~l~~l 329 (555)
..+.|..++.+ +++|..+.+.+..+
T Consensus 224 ~~~~L~~~l~d--~~vr~~a~~aL~~i 248 (280)
T 1oyz_A 224 VLSVLCDELKK--NTVYDDIIEAAGEL 248 (280)
T ss_dssp GHHHHHHHHTS--SSCCHHHHHHHHHH
T ss_pred hHHHHHHHhcC--ccHHHHHHHHHHhc
Confidence 12334445543 45777777666554
No 31
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.30 E-value=1.1e-09 Score=122.16 Aligned_cols=401 Identities=13% Similarity=0.100 Sum_probs=277.4
Q ss_pred HHHhhh-hcCCCCchhHHHHHHHHHHhcCCCChHHHH------HHHHHHhHcCCCChHHHHHHHHHhcCCChhh-----h
Q 008746 65 FGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPDLALL------TINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----L 132 (555)
Q Consensus 65 f~~vi~-~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l------~in~l~kDL~~~n~~vr~lAL~~L~~i~~~e-----i 132 (555)
+.+.++ .+...+...+-.+.-+++.++...+|..-- ++..|.+-+.++++.++..|+.++++.++.. +
T Consensus 248 ~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I 327 (810)
T 3now_A 248 IDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKAL 327 (810)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTT
T ss_pred HHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 344443 567788888888888999999888886432 3578888889999999999999999876532 3
Q ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHHHHhhh---CCC--cccC---CCchHHHHHHHhcCC--ChHHHHHHHHHHHHH
Q 008746 133 VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI---SAP--TCID---ADFPPTLKHLMLNDP--DPQVVANCLSALQEI 202 (555)
Q Consensus 133 ~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~---~p~--~~~~---~~~~~~l~~lll~d~--d~~V~~~a~~~L~~i 202 (555)
.+.-++.+..++.++++.+|..|+.++.|+... +|. .+.. ..+.+.+.++| .++ |+.++..|+.+|.++
T Consensus 328 ~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL-~~~~~d~~v~~~AveaLayL 406 (810)
T 3now_A 328 CEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFL-IKPGKDKDIRRWAADGLAYL 406 (810)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHH-HCSSCCSSHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHH
Confidence 444458899999989999999999999999642 222 1111 13456677775 444 899999999999999
Q ss_pred HhhccccchHhhhHHhhhc-cHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCCh-h-----------------------
Q 008746 203 WSLEASTSEEASREREALI-SKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS-N----------------------- 257 (555)
Q Consensus 203 ~~~~~~~~~~~~~~~~~ll-~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~-~----------------------- 257 (555)
..... .+ ..+. ....+..|+..+...++-.|-.++.+|..+...++ +
T Consensus 407 S~~~~-----vk---~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~l 478 (810)
T 3now_A 407 TLDAE-----CK---EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHEL 478 (810)
T ss_dssp TTSHH-----HH---HHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCH
T ss_pred hCCcH-----HH---HHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcccccc
Confidence 76422 11 1222 23467778877777788899999999988865321 0
Q ss_pred ---HH-H---------HHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHH
Q 008746 258 ---EI-F---------DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVL 323 (555)
Q Consensus 258 ---~~-~---------~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL 323 (555)
+. . ..++.+..++++.++.|..+|+.++..+.... +....+++ -..++|+.++.+.++..|..|.
T Consensus 479 d~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa 557 (810)
T 3now_A 479 DDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-ELRGKVVQEGGVKALLRMALEGTEKGKRHAT 557 (810)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHccCCHHHHHHHH
Confidence 00 0 24667778899999999999999999987543 33333333 3567788999988899999999
Q ss_pred HHHHHHHhh-CCcc-ccc-----cccee-eeccCC-cHHHHHHHHHHHHHccCC--CCHHHH-----HHHHHHHhhcCCH
Q 008746 324 SHLHILVMR-APFI-FAS-----DYKHF-YCQYNE-PSYVKKLKLEMLTAVANE--SNTYEI-----VTELCEYAANVDI 387 (555)
Q Consensus 324 ~~l~~l~~~-~p~~-~~~-----~~~~f-~~~~~d-d~~Ir~~aL~iL~~l~~~--~N~~~I-----v~eL~~y~~~~d~ 387 (555)
.+|..++.. +|.. |.. -+..+ ..+.++ +...+..++..|..++.. ++...| ++.|.+++.+.++
T Consensus 558 ~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~ 637 (810)
T 3now_A 558 QALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHL 637 (810)
T ss_dssp HHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCT
T ss_pred HHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCH
Confidence 999988754 3432 211 01111 122333 455567899999999865 344444 4567788888888
Q ss_pred HHHHHHHHHHHHHhcccCcHH------HHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCc------chHHHHHhhhc
Q 008746 388 PIARESIRAVGKIALQQYDVN------AIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWS------HDCIAVVGSIS 455 (555)
Q Consensus 388 ~~~~~~i~~i~~la~~~~~~~------~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~------~~~~~~l~~l~ 455 (555)
.+++.+...|+.++..-.... ..+..++.++......+..++...+..+...+++.. ...+..+.+++
T Consensus 638 ~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL 717 (810)
T 3now_A 638 YLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI 717 (810)
T ss_dssp THHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999886322111 246778888887766777777777777766444321 22344555565
Q ss_pred ccCCCchHHHHHHHHHHhcccc
Q 008746 456 SQNVQEPKAKAALIWMLGEYSQ 477 (555)
Q Consensus 456 ~~~~~~~~~~~~~~wiiGEy~~ 477 (555)
...+.+++..++|.++....
T Consensus 718 --~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 718 --ANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp --TCSSHHHHHHHHHHHHHHHT
T ss_pred --CCCCHHHHHHHHHHHHHHHh
Confidence 33678899999999977654
No 32
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.30 E-value=2.5e-09 Score=117.59 Aligned_cols=368 Identities=10% Similarity=0.096 Sum_probs=239.7
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC--ChhhhHHHHHHHHhhccCCCChHHHHHH
Q 008746 78 VLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVA 155 (555)
Q Consensus 78 ~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i--~~~ei~~~l~~~i~~~l~d~~~~VRk~A 155 (555)
.++|+.|+...- ..-+.... .+.+-++++|...|-++--+++.+ ..+|.+-.+...+++-++|+||+||-.|
T Consensus 58 ~l~Kli~l~~~G--~d~s~~~~----~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lA 131 (621)
T 2vgl_A 58 YVCKLLFIFLLG--HDIDFGHM----EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLA 131 (621)
T ss_dssp HHHHHHHHHHHS--CCCCSCHH----HHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHcC--CCCchhHH----HHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 478888886632 22233322 334467899999998776666665 3478778888999999999999999999
Q ss_pred HHHHHHHhhhCCCcccCCCchHHHHHHHh--cCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhc
Q 008746 156 VIGVLKLYHISAPTCIDADFPPTLKHLML--NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI 233 (555)
Q Consensus 156 ~lal~kl~~~~p~~~~~~~~~~~l~~lll--~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l 233 (555)
+.+++++. .|+.. +.+.+.+.++ + .|++|.|+..|+.++..+.+.+|+... . ...+..+.+.+
T Consensus 132 Lr~L~~i~--~~e~~--~~l~~~v~~~-l~~~d~~~~VRK~A~~al~kl~~~~p~~~~----~------~~~~~~l~~lL 196 (621)
T 2vgl_A 132 LHCIANVG--SREMA--EAFAGEIPKI-LVAGDTMDSVKQSAALCLLRLYRTSPDLVP----M------GDWTSRVVHLL 196 (621)
T ss_dssp HHHHHHHC--CHHHH--HHHTTHHHHH-HHCSSSCHHHHHHHHHHHHHHHHHCGGGCC----C------CSCHHHHHHHT
T ss_pred HHHhhccC--CHHHH--HHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHhChhhcC----c------hhHHHHHHHHh
Confidence 99999984 56665 6778888888 6 899999999999999999987764211 0 01355666677
Q ss_pred CCCChhHHHHHHHHHHccCCCChhHHH----HHHHHHHHHhccC-------------chHHHHHHHHHHHHhcCCc-chh
Q 008746 234 KEFSEWAQCLVLELVAKYVPLDSNEIF----DIMNLLEDRLQHA-------------NGAVVLSTIKVFLHLTLSM-TDV 295 (555)
Q Consensus 234 ~~~~pw~q~~iL~~L~~~~~~~~~~~~----~i~~~l~~~L~s~-------------~~aV~~eai~~i~~l~~~~-~~~ 295 (555)
.+.+|-.+...+.++....+.+++... .+++.+..++... ++......++++..+.+.. +..
T Consensus 197 ~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~ 276 (621)
T 2vgl_A 197 NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV 276 (621)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHH
T ss_pred CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHH
Confidence 899999999999998888776665322 2334444444321 5777788888887776532 233
Q ss_pred HHHHHHHHHHHHHHHhc---CC---------C--chhHHHHHHHHHHHHhhCCcccc---cccceeeeccCCcHHHHHHH
Q 008746 296 HQQVYERIKAPLLTLVS---SG---------S--PEQSYAVLSHLHILVMRAPFIFA---SDYKHFYCQYNEPSYVKKLK 358 (555)
Q Consensus 296 ~~~~l~~i~~~L~~ll~---~~---------~--~~~ry~aL~~l~~l~~~~p~~~~---~~~~~f~~~~~dd~~Ir~~a 358 (555)
... +...|..+++ +. + +-+-|-+.+.+..+- ..|++.. ..+..| ..+.++.+|-.+
T Consensus 277 ~~~----l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~--L~~~~~niry~a 349 (621)
T 2vgl_A 277 RGR----LTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQF--LQHRETNLRYLA 349 (621)
T ss_dssp HHH----HHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH--SSCSCHHHHHHH
T ss_pred HHH----HHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHH--hcCCCcchHHHH
Confidence 222 2223333321 11 1 133444444443331 1122211 122222 245667899999
Q ss_pred HHHHHHccCCCC----HHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhhcccchhHHHHHHHH
Q 008746 359 LEMLTAVANESN----TYEIVTELCEYAA-NVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLV 433 (555)
Q Consensus 359 L~iL~~l~~~~N----~~~Iv~eL~~y~~-~~d~~~~~~~i~~i~~la~~~~~~~~~i~~ll~ll~~~~~~v~~e~i~~i 433 (555)
|+.|..++.... +......+...+. +.|..++..++..+..++.. .+...++..++..+...+..+..+++..+
T Consensus 350 L~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I 428 (621)
T 2vgl_A 350 LESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQQIVAEMLSYLETADYSIREEIVLKV 428 (621)
T ss_dssp HHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999987653 2223344445567 88999999999998887733 12345788888888877778888988888
Q ss_pred HHHHHhCCCCcchHHHHHhhhcc--cCCCchHHHHHHHHHHhc
Q 008746 434 KDLLRKYPQWSHDCIAVVGSISS--QNVQEPKAKAALIWMLGE 474 (555)
Q Consensus 434 ~~ii~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~wiiGE 474 (555)
..+..++|.....++..+.+++. ...-..++...+.-++.+
T Consensus 429 ~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~ 471 (621)
T 2vgl_A 429 AILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN 471 (621)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 88888888766666666666652 111223343444555544
No 33
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.29 E-value=1.3e-10 Score=108.66 Aligned_cols=182 Identities=19% Similarity=0.185 Sum_probs=126.4
Q ss_pred HHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHH
Q 008746 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (555)
Q Consensus 101 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~ 180 (555)
....+.+.|.|+|+.+|..|+..|+.++.++..+ .+.+++.|+++.||..|+.++.++.. ++.++.|.
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~----~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~ 82 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE----PLIKALKDEDAWVRRAAADALGQIGD--------ERAVEPLI 82 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHH----HHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHH----HHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHHHHH
Confidence 3467777888888888888888888887765544 44466778888888888888877631 34557777
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHH
Q 008746 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF 260 (555)
Q Consensus 181 ~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~ 260 (555)
.+ ++|+|+.|+..|+.+|..+... ..+..|...+.+.+++.+..++..|..+.. +
T Consensus 83 ~~-l~d~~~~vr~~a~~aL~~~~~~------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---- 137 (201)
T 3ltj_A 83 KA-LKDEDGWVRQSAAVALGQIGDE------------------RAVEPLIKALKDEDWFVRIAAAFALGEIGD--E---- 137 (201)
T ss_dssp HH-TTCSSHHHHHHHHHHHHHHCCG------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--G----
T ss_pred HH-HcCCCHHHHHHHHHHHHHhCcH------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--H----
Confidence 76 5788888888888888776431 123445556677788888888888887753 2
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 008746 261 DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHIL 329 (555)
Q Consensus 261 ~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l 329 (555)
..++.+..++.+.++.|..+|+.++..++.. .....|..++.+.++.+|..|.+.|..+
T Consensus 138 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 138 RAVEPLIKALKDEDGWVRQSAADALGEIGGE----------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH----------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCch----------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2455667777788888888888888877532 1233455566677888888888777644
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.27 E-value=1.5e-09 Score=116.65 Aligned_cols=434 Identities=13% Similarity=0.052 Sum_probs=265.7
Q ss_pred hHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChH-HH----HHHHHHHhHcCC-CChHHHHHHHHHhcCCChh-h----h
Q 008746 64 VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDL-AL----LTINFLQRDCKD-EDPMIRGLALRSLCSLRVA-N----L 132 (555)
Q Consensus 64 lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~-~~----l~in~l~kDL~~-~n~~vr~lAL~~L~~i~~~-e----i 132 (555)
..+.+++++.+++..++.-+-.++..+...++.. .+ -++..+.+-|.+ +++.+|..|+++|.++... + +
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 3666678888889998888888888877544321 11 135666666654 5899999999999887432 2 2
Q ss_pred HH-HHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc---cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc
Q 008746 133 VE-YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (555)
Q Consensus 133 ~~-~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~---~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~ 208 (555)
.+ ..++.+.+++.++++.||..|+.++.++...+++.. .+.+.++.|..+ +.++++.++..+..+|..+...++.
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l-l~~~~~~~~~~~~~~L~~la~~~~~ 176 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL-LNKTNVKFLAITTDCLQILAYGNQE 176 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG-GGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHH-HhcCCHHHHHHHHHHHHHHHhCCHH
Confidence 21 367788899999999999999999999987655421 125678888888 5888999999998888887654321
Q ss_pred cchHhhhHHhhhccHHHHHHHHhhcCCCC-hhHHHHHHHHHHccCCCChhHHH-----HHHHHHHHHhccCchHHHHHHH
Q 008746 209 TSEEASREREALISKPVIYYLLNRIKEFS-EWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTI 282 (555)
Q Consensus 209 ~~~~~~~~~~~ll~~~~~~~L~~~l~~~~-pw~q~~iL~~L~~~~~~~~~~~~-----~i~~~l~~~L~s~~~aV~~eai 282 (555)
.. ..+.....+..|+..+.+.+ +..+.....+|..+... ++... ..++.+..++++.++.++..|+
T Consensus 177 ----~~---~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 177 ----SK---LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp ----HH---HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred ----HH---HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 10 01111113444444444433 33444455555555432 22221 3566777788888889999999
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccc----c----cccceeeeccCCcHHH
Q 008746 283 KVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIF----A----SDYKHFYCQYNEPSYV 354 (555)
Q Consensus 283 ~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~----~----~~~~~f~~~~~dd~~I 354 (555)
.++..+....+... ....+.+.|..++.+.+++++..+...+..+....++.. . +.+-.+....+++..+
T Consensus 249 ~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v 326 (529)
T 1jdh_A 249 WTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326 (529)
T ss_dssp HHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHH
Confidence 98887764322110 112345667788888999999999999988866543211 0 1111111122445789
Q ss_pred HHHHHHHHHHccCCC-CH----H-----HHHHHHHHHhhcCC-HHHHHHHHHHHHHHhcccCcHH-----HHHHHHHHHh
Q 008746 355 KKLKLEMLTAVANES-NT----Y-----EIVTELCEYAANVD-IPIARESIRAVGKIALQQYDVN-----AIVDRLLQFL 418 (555)
Q Consensus 355 r~~aL~iL~~l~~~~-N~----~-----~Iv~eL~~y~~~~d-~~~~~~~i~~i~~la~~~~~~~-----~~i~~ll~ll 418 (555)
+..++..|..++... .. . ..++.|...+.+.+ .+++..++..++.++....... ..+..+++++
T Consensus 327 ~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll 406 (529)
T 1jdh_A 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 406 (529)
T ss_dssp HHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHH
Confidence 999999999997642 11 1 13555667777765 6899999999999986432221 2467778877
Q ss_pred hcccchhHHH----------------------HHHHHHHHHHhCCCCcc-----hHHHHHhhhcccCCCchHHHHHHHHH
Q 008746 419 EMEKDYVTAE----------------------ALVLVKDLLRKYPQWSH-----DCIAVVGSISSQNVQEPKAKAALIWM 471 (555)
Q Consensus 419 ~~~~~~v~~e----------------------~i~~i~~ii~~~~~~~~-----~~~~~l~~l~~~~~~~~~~~~~~~wi 471 (555)
..+...+..+ ++..+..+.. +++.+. ..+..+.+++ ...++.++..+.|.
T Consensus 407 ~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll--~~~~~~v~~~a~~~ 483 (529)
T 1jdh_A 407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLL--YSPIENIQRVAAGV 483 (529)
T ss_dssp HHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGG--GCSCHHHHHHHHHH
T ss_pred HHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-CchHHHHHhccCCccHHHHHH--cCCchHHHHHHHHH
Confidence 6543223222 2233333322 121110 1123344444 23467889999999
Q ss_pred HhccccCCCChH-----HHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 008746 472 LGEYSQDMQDAP-----YILESLTENWEEEPSAEVRLHLLTAVMKC 512 (555)
Q Consensus 472 iGEy~~~~~~~~-----~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl 512 (555)
+++.+..-+... ..++.+.+.....+ ++|+..+..++.++
T Consensus 484 l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~-~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 484 LCELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTCHHHHHHGGGCSS-HHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHcCChHHHHHHhcCCC-HHHHHHHHHHHHhc
Confidence 988764311011 11222333333344 88888888877665
No 35
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.25 E-value=1.7e-09 Score=116.33 Aligned_cols=296 Identities=14% Similarity=0.117 Sum_probs=192.7
Q ss_pred HHHHHhhccC-CCChHHHHHHHHHHHHHhhhCCCc---ccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccch
Q 008746 136 LVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (555)
Q Consensus 136 l~~~i~~~l~-d~~~~VRk~A~lal~kl~~~~p~~---~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~ 211 (555)
++|.+.++|. +.++.|+..|+.|+..+...+++. +.+.+.++.|..+ +.++|+.|+..|+.+|..++.+.+.
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~l-L~s~~~~v~e~A~~aL~nLa~d~~~--- 176 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL-LASPHAHISEQAVWALGNIAGDGSA--- 176 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCHH---
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCHH---
Confidence 4666677775 445788888888888886544432 2235677888887 5788888888888888888765432
Q ss_pred HhhhHHhhhccHHHHHHHHhhcCCCC-----hhHHHHHHHHHHccCCC-----ChhHHHHHHHHHHHHhccCchHHHHHH
Q 008746 212 EASREREALISKPVIYYLLNRIKEFS-----EWAQCLVLELVAKYVPL-----DSNEIFDIMNLLEDRLQHANGAVVLST 281 (555)
Q Consensus 212 ~~~~~~~~ll~~~~~~~L~~~l~~~~-----pw~q~~iL~~L~~~~~~-----~~~~~~~i~~~l~~~L~s~~~aV~~ea 281 (555)
+.+ .++....+..|+..+...+ ...+..+...|..+... .......+++.+..++++.++.|+..|
T Consensus 177 --~r~--~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A 252 (510)
T 3ul1_B 177 --FRD--LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252 (510)
T ss_dssp --HHH--HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred --HHH--HHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence 111 1111113444555554332 22333444444444322 112235678888889999999999999
Q ss_pred HHHHHHhcCCcchhHHHHH-HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcc----cccc-ccee-eeccCCcHHH
Q 008746 282 IKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI----FASD-YKHF-YCQYNEPSYV 354 (555)
Q Consensus 282 i~~i~~l~~~~~~~~~~~l-~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~----~~~~-~~~f-~~~~~dd~~I 354 (555)
+.++..+.....+....+. ..+.+.|..++.+.++.++..++..+..++...+.. .... +..+ -+..+.+..+
T Consensus 253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v 332 (510)
T 3ul1_B 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 332 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHH
T ss_pred HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHH
Confidence 9999888765433222222 134566788898899999999999998876544321 1111 1122 2346777889
Q ss_pred HHHHHHHHHHccCCC--CHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHhcccC-c-HH-----HHHHHHHHHhhc
Q 008746 355 KKLKLEMLTAVANES--NTYE-----IVTELCEYAANVDIPIARESIRAVGKIALQQY-D-VN-----AIVDRLLQFLEM 420 (555)
Q Consensus 355 r~~aL~iL~~l~~~~--N~~~-----Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~-~-~~-----~~i~~ll~ll~~ 420 (555)
|+.+.-.|..++..+ +... +++.|...+.+.+.+++.++..+|+.++..-. . .. .++..++++|..
T Consensus 333 ~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 999999999987432 2222 45667888888999999999999999886432 2 11 257888898888
Q ss_pred ccchhHHHHHHHHHHHHHh
Q 008746 421 EKDYVTAEALVLVKDLLRK 439 (555)
Q Consensus 421 ~~~~v~~e~i~~i~~ii~~ 439 (555)
....+...++..+.+|++.
T Consensus 413 ~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 413 KDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 7777777777777777664
No 36
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.21 E-value=7.8e-10 Score=104.20 Aligned_cols=186 Identities=18% Similarity=0.180 Sum_probs=149.1
Q ss_pred hhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhh
Q 008746 63 AVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGL 142 (555)
Q Consensus 63 ~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~ 142 (555)
..+..+++.+.+++..+|..+--.+..+.. ++ ++..+.+-+.|+++.+|..|+.+|+.++.++..+ .+.+
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~----~L~~ 88 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--ER----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVE----PLIK 88 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHH----HHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--cc----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHH----HHHH
Confidence 347778888999999999999888888753 22 3467788889999999999999999999887655 4457
Q ss_pred ccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhcc
Q 008746 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALIS 222 (555)
Q Consensus 143 ~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~ 222 (555)
++.|+++.||..|+.++.++.. ++.++.|..+ ++|+|+.|+..|+.+|..+...+
T Consensus 89 ~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~-l~d~~~~vr~~a~~aL~~~~~~~---------------- 143 (211)
T 3ltm_A 89 ALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKA-LKDEDWFVRIAAAFALGEIGDER---------------- 143 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHH-TTCSSHHHHHHHHHHHHHHCCGG----------------
T ss_pred HHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCHH----------------
Confidence 8899999999999999998842 4467888887 69999999999999999884321
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC
Q 008746 223 KPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS 291 (555)
Q Consensus 223 ~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~ 291 (555)
.+..|...+.+.+++.+..++..|..+.. + ..++.+..++++.++.|..+|+.++..+...
T Consensus 144 --~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 144 --AVEPLIKALKDEDGWVRQSAADALGEIGG--E----RVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp --GHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H----HHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h----hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 34455666789999999999999999863 2 3667777888889999999999999877654
No 37
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.20 E-value=3.3e-08 Score=109.37 Aligned_cols=437 Identities=13% Similarity=0.063 Sum_probs=274.6
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHH-----HHHHHHHhHcCC-CChHHHHHHHHHhcCCCh-hh----hH
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL-----LTINFLQRDCKD-EDPMIRGLALRSLCSLRV-AN----LV 133 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~in~l~kDL~~-~n~~vr~lAL~~L~~i~~-~e----i~ 133 (555)
++.+++++.+++..+|..+-..+..+...++.... -++..+.+-|.+ +++.+|..|+++|.++.. ++ +.
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~ 95 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 95 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 66778888899999999999999888776553211 135667777765 489999999888887643 22 11
Q ss_pred -HHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc---cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc
Q 008746 134 -EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (555)
Q Consensus 134 -~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~---~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~ 209 (555)
...++.+.+++.++++.||+.|+.++.++...+++.. .+.+.++.|..+ +.++++.+...++.+|..++..++.
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~La~~~~~- 173 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL-LNKTNVKFLAITTDCLQILAYGNQE- 173 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG-GGCCCHHHHHHHHHHHHHHHTTCHH-
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH-HCcCCHHHHHHHHHHHHHHHhcCcH-
Confidence 1357788899999999999999999999987654322 136788899998 5888999999988888888753321
Q ss_pred chHhhhHHhhhccHHHHHHHHhhcCCCC-hhHHHHHHHHHHccCCCChhHHH-----HHHHHHHHHhccCchHHHHHHHH
Q 008746 210 SEEASREREALISKPVIYYLLNRIKEFS-EWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIK 283 (555)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~~L~~~l~~~~-pw~q~~iL~~L~~~~~~~~~~~~-----~i~~~l~~~L~s~~~aV~~eai~ 283 (555)
. ...+.....+..|+..+...+ +-.+...+.+|..+... ++... ..++.+..++++.+..++..|+.
T Consensus 174 ---~---~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~ 246 (644)
T 2z6h_A 174 ---S---KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 246 (644)
T ss_dssp ---H---HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHH
T ss_pred ---H---HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 1 111111124555666555543 33444555555555422 22222 24667777888888899999999
Q ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcc----cccc-cceee--ecc-CCcHHHH
Q 008746 284 VFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI----FASD-YKHFY--CQY-NEPSYVK 355 (555)
Q Consensus 284 ~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~----~~~~-~~~f~--~~~-~dd~~Ir 355 (555)
++..+....+.. .....+.+.|..++.+.+++++..+...+..+....+.. .... +..+. +.. ++...++
T Consensus 247 ~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 247 TLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 988776432211 011234566778888899999999999998887654321 1111 11111 112 3336899
Q ss_pred HHHHHHHHHccCCCC----HH------HHHHHHHHHhhcC-CHHHHHHHHHHHHHHhcccCcH-----HHHHHHHHHHhh
Q 008746 356 KLKLEMLTAVANESN----TY------EIVTELCEYAANV-DIPIARESIRAVGKIALQQYDV-----NAIVDRLLQFLE 419 (555)
Q Consensus 356 ~~aL~iL~~l~~~~N----~~------~Iv~eL~~y~~~~-d~~~~~~~i~~i~~la~~~~~~-----~~~i~~ll~ll~ 419 (555)
..++..|..++.... .. ..++.|...+.+. +.+++..++..++.++..-... ...+..+++++.
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~ 404 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHh
Confidence 999999999986422 11 2466677777776 4789999999999988542221 125677778776
Q ss_pred cccc----------------------hhHHHHHHHHHHHHHhCCCCcc-----hHHHHHhhhcccCCCchHHHHHHHHHH
Q 008746 420 MEKD----------------------YVTAEALVLVKDLLRKYPQWSH-----DCIAVVGSISSQNVQEPKAKAALIWML 472 (555)
Q Consensus 420 ~~~~----------------------~v~~e~i~~i~~ii~~~~~~~~-----~~~~~l~~l~~~~~~~~~~~~~~~wii 472 (555)
.+.. .+...+...+..+.. .++.+. ..+..+.+++ ...++.++..++|.+
T Consensus 405 ~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL--~~~~~~v~~~a~~aL 481 (644)
T 2z6h_A 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLL--YSPIENIQRVAAGVL 481 (644)
T ss_dssp HHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHT--TCSCHHHHHHHHHHH
T ss_pred ccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHH--cCCCHHHHHHHHHHH
Confidence 5321 122233334443322 111110 1233444444 235677888899998
Q ss_pred hccccCCCChHHH------HHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCC
Q 008746 473 GEYSQDMQDAPYI------LESLTENWEEEPSAEVRLHLLTAVMKCFFKRP 517 (555)
Q Consensus 473 GEy~~~~~~~~~~------l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p 517 (555)
++.+.. +...+. +..+.+....++ +++|..+..++.++....+
T Consensus 482 ~~l~~~-~~~~~~i~~~g~l~~L~~ll~~~~-~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 482 CELAQD-KEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHTS-HHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTTSC
T ss_pred HHHHcC-HHHHHHHHHcCChhHHHHHHcCCC-HHHHHHHHHHHHHHhccCc
Confidence 876542 111111 223333344455 9999999999999876554
No 38
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.20 E-value=9.5e-10 Score=102.78 Aligned_cols=183 Identities=18% Similarity=0.193 Sum_probs=148.7
Q ss_pred hHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhc
Q 008746 64 VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLG 143 (555)
Q Consensus 64 lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~ 143 (555)
.+..+++.+.+++..+|..+.-.+..+.. ++ ++..+.+-+.++++.+|..|+.+|+.++.++..+ .+.++
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--~~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~----~L~~~ 84 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--ER----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVE----PLIKA 84 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHH----HHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC--hh----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHH----HHHHH
Confidence 47788999999999999999999888753 22 3467778888999999999999999999887654 44578
Q ss_pred cCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccH
Q 008746 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK 223 (555)
Q Consensus 144 l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~ 223 (555)
+.|+++.||..|+.++.++.. ++..+.|..+ ++|+|+.|+..|+.+|..+...
T Consensus 85 l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~-l~d~~~~vr~~a~~aL~~~~~~------------------ 137 (201)
T 3ltj_A 85 LKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKA-LKDEDWFVRIAAAFALGEIGDE------------------ 137 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHH-TTCSSHHHHHHHHHHHHHHTCG------------------
T ss_pred HcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHH-HcCCCHHHHHHHHHHHHHhCCH------------------
Confidence 899999999999999998742 4467888887 6999999999999999987532
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Q 008746 224 PVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (555)
Q Consensus 224 ~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~ 289 (555)
..+..|...+.+.+++.+..++..|..+. ++ ..++.+..++++.++.|...|+.++..+.
T Consensus 138 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~----~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 138 RAVEPLIKALKDEDGWVRQSAADALGEIG--GE----RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH----HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch----hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 13445666677899999999999999985 32 35667777888889999999998887664
No 39
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.18 E-value=3.5e-09 Score=114.45 Aligned_cols=330 Identities=13% Similarity=0.110 Sum_probs=215.3
Q ss_pred HHHHHhHcCCCChHHHHHHHHHhcCC----Chh---hhHH-HHHHHHhhccC-CCChHHHHHHHHHHHHHhhhCCCc---
Q 008746 102 INFLQRDCKDEDPMIRGLALRSLCSL----RVA---NLVE-YLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPT--- 169 (555)
Q Consensus 102 in~l~kDL~~~n~~vr~lAL~~L~~i----~~~---ei~~-~l~~~i~~~l~-d~~~~VRk~A~lal~kl~~~~p~~--- 169 (555)
+..+.+.++++|+..+-.|++.+-++ ..| ++++ .++|.+.++|. +.++.++..|+.|+..+...+++.
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 35556666666666666555544332 222 2222 35677778875 567999999999999997655432
Q ss_pred ccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCC-----hhHHHHH
Q 008746 170 CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFS-----EWAQCLV 244 (555)
Q Consensus 170 ~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~-----pw~q~~i 244 (555)
+.+.+.++.|..+ +.++++.|+..|+.+|..++..++. +.+ .++....+..|+..+...+ ...+..+
T Consensus 158 vv~~Gaip~Lv~L-L~s~~~~v~e~A~~aL~nLa~~~~~-----~r~--~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a 229 (529)
T 3tpo_A 158 VVDGGAIPAFISL-LASPHAHISEQAVWALGNIAGAGSA-----FRD--LVIKHGAIDPLLALLAVPDLSTLACGYLRNL 229 (529)
T ss_dssp HHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCHH-----HHH--HHHHTTCHHHHHHTTCSSCGGGSCHHHHHHH
T ss_pred HHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhccCHH-----HHH--HHHHcCCcHHHHHHHhccchhHhHHHHHHHH
Confidence 2346788888887 6999999999999999999876542 111 1111123455666555432 2334444
Q ss_pred HHHHHccCCCC-----hhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHH-HHHHHHHHHHhcCCCchh
Q 008746 245 LELVAKYVPLD-----SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPEQ 318 (555)
Q Consensus 245 L~~L~~~~~~~-----~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l-~~i~~~L~~ll~~~~~~~ 318 (555)
...|..++... ......+++.+..++++.++.|...|+.++..+.....+....+. ..+.+.|+.++.+.++.+
T Consensus 230 ~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 309 (529)
T 3tpo_A 230 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 309 (529)
T ss_dssp HHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred HHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhH
Confidence 55555543221 123356788888999999999999999999888765433222222 234566788898899999
Q ss_pred HHHHHHHHHHHHhhCCcc----ccc-cccee-eeccCCcHHHHHHHHHHHHHccCCC--CHHH-----HHHHHHHHhhcC
Q 008746 319 SYAVLSHLHILVMRAPFI----FAS-DYKHF-YCQYNEPSYVKKLKLEMLTAVANES--NTYE-----IVTELCEYAANV 385 (555)
Q Consensus 319 ry~aL~~l~~l~~~~p~~----~~~-~~~~f-~~~~~dd~~Ir~~aL~iL~~l~~~~--N~~~-----Iv~eL~~y~~~~ 385 (555)
+..++..+..++...+.. ... -+..+ -+..+.+..+|..+.-.|..++..+ +... +++-|...+.+.
T Consensus 310 ~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 389 (529)
T 3tpo_A 310 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 389 (529)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC
Confidence 999999998876544321 111 11111 1345677889999999999987432 2222 456677888888
Q ss_pred CHHHHHHHHHHHHHHhccc-CcH-H-----HHHHHHHHHhhcccchhHHHHHHHHHHHHHh
Q 008746 386 DIPIARESIRAVGKIALQQ-YDV-N-----AIVDRLLQFLEMEKDYVTAEALVLVKDLLRK 439 (555)
Q Consensus 386 d~~~~~~~i~~i~~la~~~-~~~-~-----~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~ 439 (555)
+.+++.+++.+|+.++..- ++. . .++..++++|......+...++..+.+|++.
T Consensus 390 ~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 390 DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999888642 221 1 2477888888877777777777777777653
No 40
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.18 E-value=1.5e-08 Score=109.03 Aligned_cols=329 Identities=10% Similarity=0.027 Sum_probs=225.5
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhc--CCCChH--HHH--HHHHHHhHcC-CCChHHHHHHHHHhcCC--Chhhh---
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYA--KVNPDL--ALL--TINFLQRDCK-DEDPMIRGLALRSLCSL--RVANL--- 132 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~--~~~~e~--~~l--~in~l~kDL~-~~n~~vr~lAL~~L~~i--~~~ei--- 132 (555)
+.++++.+.|+|.+.+.-+--.+..++ +.+|-+ .+- ++..|.+-|+ ++++.++..|..+|+++ ++++-
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 889999999999998888877777654 234422 221 3678888886 55689999999999987 34443
Q ss_pred -HH-HHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc---ccCCCchHHHHHHHhcCCC-----hHHHHHHHHHHHHH
Q 008746 133 -VE-YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPD-----PQVVANCLSALQEI 202 (555)
Q Consensus 133 -~~-~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~---~~~~~~~~~l~~lll~d~d-----~~V~~~a~~~L~~i 202 (555)
++ ..+|.+.++|.++++.||..|+.|+..+...+|+. +.+.+.++.|..+ +.+.+ ..+...+..++..+
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~l-L~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL-LAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH-TCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHH-HHhccchhhhHHHHHHHHHHHHHH
Confidence 22 25788999999999999999999999998655542 2345677888887 45544 34566777777777
Q ss_pred HhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHH-----HHHHHHHHHhccCchHH
Q 008746 203 WSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAV 277 (555)
Q Consensus 203 ~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~-----~i~~~l~~~L~s~~~aV 277 (555)
+....... . .... ...+..|.+.+...++..+......|..+...+.+... .+++.+..++++.+..|
T Consensus 218 ~~~~~~~~-----~-~~~~-~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 290 (510)
T 3ul1_B 218 CRNKNPAP-----P-LDAV-EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 290 (510)
T ss_dssp HCCCSSCC-----C-HHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred hhcccchh-----H-HHHH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhh
Confidence 65432110 0 0001 23566677777889999999999999998765543322 24667888999999999
Q ss_pred HHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccc----cccc-ce-eeeccCC
Q 008746 278 VLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIF----ASDY-KH-FYCQYNE 350 (555)
Q Consensus 278 ~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~----~~~~-~~-f~~~~~d 350 (555)
...|++++..+....+.....+++ ....+|..++.++++++|..|...+..+....++.. ...+ .. +.+..+.
T Consensus 291 ~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~ 370 (510)
T 3ul1_B 291 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 370 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred hhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC
Confidence 999999999886544333222222 233456678888899999999999888765443311 1111 11 1234567
Q ss_pred cHHHHHHHHHHHHHccCCCCHHH--------HHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 008746 351 PSYVKKLKLEMLTAVANESNTYE--------IVTELCEYAANVDIPIARESIRAVGKIA 401 (555)
Q Consensus 351 d~~Ir~~aL~iL~~l~~~~N~~~--------Iv~eL~~y~~~~d~~~~~~~i~~i~~la 401 (555)
+..+|+.+.-.|..++...+.+. +++-|...+.+.|++++..++.++..+.
T Consensus 371 ~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 371 DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 78899999999998876544433 2555677888889888877666665443
No 41
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.17 E-value=2.7e-09 Score=102.67 Aligned_cols=227 Identities=17% Similarity=0.088 Sum_probs=171.1
Q ss_pred HHHHHhHcCCCChHHHHHHHHHhcCCCh--hhhHH-----HHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc---c
Q 008746 102 INFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVE-----YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---I 171 (555)
Q Consensus 102 in~l~kDL~~~n~~vr~lAL~~L~~i~~--~ei~~-----~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~---~ 171 (555)
+..+.+-|.++++.+|..|+.+|+++.. ++... ..++.+.+++.++++.||..|+.++..+...+++.. .
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4678888899999999999999988732 22221 367888899999999999999999999976444321 2
Q ss_pred CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHcc
Q 008746 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (555)
Q Consensus 172 ~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~ 251 (555)
+.+.++.+..+ +.++|+.|+..|+.+|..++..++. .+ ..+.....+..|++.+.+.++..+...+..|..+
T Consensus 84 ~~~~i~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~~----~~---~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 84 DAGGVEVLVKL-LTSTDSEVQKEAARALANIASGPDE----AI---KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 155 (252)
T ss_dssp HTTHHHHHHHH-TTCSSHHHHHHHHHHHHHHTTSCHH----HH---HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCCHH----HH---HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34678888888 6889999999999999999864432 11 1112223577788888899999999999999999
Q ss_pred CCCChhHHH-----HHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHHH
Q 008746 252 VPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSH 325 (555)
Q Consensus 252 ~~~~~~~~~-----~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~ 325 (555)
...++.... ..++.+..++++.++.|...|+.++..+....+.....+.+ .+.+.|..++.++++.+|..|+..
T Consensus 156 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 156 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 876554322 36778888999999999999999999887644433222222 345667788888999999999999
Q ss_pred HHHHHhhCCcc
Q 008746 326 LHILVMRAPFI 336 (555)
Q Consensus 326 l~~l~~~~p~~ 336 (555)
+..+....+.-
T Consensus 236 L~~l~~~~~~~ 246 (252)
T 4hxt_A 236 LENIKSGGWLE 246 (252)
T ss_dssp HHHHHHTCBCC
T ss_pred HHHHHcCCCcc
Confidence 99998776543
No 42
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.14 E-value=5.4e-09 Score=116.64 Aligned_cols=397 Identities=15% Similarity=0.122 Sum_probs=267.8
Q ss_pred CChHHHHHHHHHHHHHHhcCC-Ccc-------hhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHH----HHHHHHH
Q 008746 39 GIDDSKRELFKKVISYMTIGI-DVS-------AVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL----LTINFLQ 106 (555)
Q Consensus 39 ~~~~~k~~~l~kli~~~~~G~-d~s-------~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~----l~in~l~ 106 (555)
++.+++..+. ..+.....|- |+. ...+.++.+++|++..+++-++.++..... +++..- .-+..|.
T Consensus 259 ~~~~~~~~a~-~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~-~~~~R~~I~~~gv~~L~ 336 (810)
T 3now_A 259 PDMESKVRVT-VAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASS-KKDKAKALCEQGVDILK 336 (810)
T ss_dssp CCHHHHHHHH-HHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTT-SHHHHHTTHHHHHHHHH
T ss_pred CChHhHHHHH-HHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CcHHHHHHHHcCcHHHH
Confidence 5567788877 5566666773 221 234566789999999999999998888654 344322 2246777
Q ss_pred hHcCCCChHHHHHHHHHhcCCCh--------hhh----HHHHHHHHhhccCCC--ChHHHHHHHHHHHHHhhhCC---Cc
Q 008746 107 RDCKDEDPMIRGLALRSLCSLRV--------ANL----VEYLVGPLGLGLKDN--NSYVRTVAVIGVLKLYHISA---PT 169 (555)
Q Consensus 107 kDL~~~n~~vr~lAL~~L~~i~~--------~ei----~~~l~~~i~~~l~d~--~~~VRk~A~lal~kl~~~~p---~~ 169 (555)
+-+++.++.+|..|+-+|++++. +.+ .+.+++.++++|.++ ++.||+.|+-++..+-...+ +.
T Consensus 337 ~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~l 416 (810)
T 3now_A 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKL 416 (810)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 77788999999999999998742 112 467788888999888 89999999999998864221 12
Q ss_pred ccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc--------------------ch----HhhhHH-hhhccHH
Q 008746 170 CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST--------------------SE----EASRER-EALISKP 224 (555)
Q Consensus 170 ~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~--------------------~~----~~~~~~-~~ll~~~ 224 (555)
+.+.++++.|..+ ++.+|+.+...|+.+|..+....... .. +....+ ..++...
T Consensus 417 v~d~g~Ip~LV~L-L~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG 495 (810)
T 3now_A 417 IEDKASIHALMDL-ARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG 495 (810)
T ss_dssp HHCHHHHHHHHHH-HHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HHccchHHHHHHH-hCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc
Confidence 2345688889888 57789999999999999998632100 00 000000 1112222
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHH-----HHHHHHHHhccCchHHHHHHHHHHHHhcCC-cchh---
Q 008746 225 VIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLS-MTDV--- 295 (555)
Q Consensus 225 ~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~-----i~~~l~~~L~s~~~aV~~eai~~i~~l~~~-~~~~--- 295 (555)
.+..|...+...+|-.|......|..+.. +++.... .++.|..+|++.++.+...|+.++..+... .+..
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~ 574 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFS 574 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhc
Confidence 45666666778899999999999999873 3333322 466777888888888899999998876532 1221
Q ss_pred HHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHhhCCcc----ccc-cccee-eeccCCcHHHHHHHHHHHHHccCC
Q 008746 296 HQQVYERIKAPLLTLVSSGSP-EQSYAVLSHLHILVMRAPFI----FAS-DYKHF-YCQYNEPSYVKKLKLEMLTAVANE 368 (555)
Q Consensus 296 ~~~~l~~i~~~L~~ll~~~~~-~~ry~aL~~l~~l~~~~p~~----~~~-~~~~f-~~~~~dd~~Ir~~aL~iL~~l~~~ 368 (555)
.+... ...++|..+|.+... ..++.|+..|..++...++. ... -+..+ .+..+++..+++.|++.|..++..
T Consensus 575 ~~~~~-~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~ 653 (810)
T 3now_A 575 GQRSL-DVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS 653 (810)
T ss_dssp THHHH-HTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS
T ss_pred chhhh-cHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 11122 256788888875423 34678888888776543221 111 11111 234566778999999999998764
Q ss_pred CCH-H------HHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCc-H------HHHHHHHHHHhhcccchhHHHHHHHHH
Q 008746 369 SNT-Y------EIVTELCEYAANVDIPIARESIRAVGKIALQQYD-V------NAIVDRLLQFLEMEKDYVTAEALVLVK 434 (555)
Q Consensus 369 ~N~-~------~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~-~------~~~i~~ll~ll~~~~~~v~~e~i~~i~ 434 (555)
+.. . ..++-|..++.+.|.+.++.+..+++.++.-.+. . ...+..+++++..+...+..+++..+.
T Consensus 654 ~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~ 733 (810)
T 3now_A 654 EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL 733 (810)
T ss_dssp HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 322 2 2345566788888999999999999999864332 1 125678889888887778888878888
Q ss_pred HHHHhC
Q 008746 435 DLLRKY 440 (555)
Q Consensus 435 ~ii~~~ 440 (555)
++....
T Consensus 734 NL~~~s 739 (810)
T 3now_A 734 NMINAG 739 (810)
T ss_dssp HHHTTC
T ss_pred HHHhCC
Confidence 777643
No 43
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.04 E-value=1.3e-07 Score=102.17 Aligned_cols=286 Identities=14% Similarity=0.066 Sum_probs=199.1
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc-------chhHHHhhhhcC-CCCchhHHHHHHHHHHhcCCCChHHHH-----HHHHH
Q 008746 39 GIDDSKRELFKKVISYMTIGIDV-------SAVFGEMVMCSA-TSDIVLKKMCYLYVGNYAKVNPDLALL-----TINFL 105 (555)
Q Consensus 39 ~~~~~k~~~l~kli~~~~~G~d~-------s~lf~~vi~~~~-s~~~~~Krl~yl~l~~~~~~~~e~~~l-----~in~l 105 (555)
++.+.+..+++.+-.+.....+. +...+..++++. +++..++.-+--++..+...+++.... ++..|
T Consensus 88 ~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~L 167 (529)
T 3tpo_A 88 NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF 167 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 56677888887766665555432 123556677775 556778888888888887777664222 47889
Q ss_pred HhHcCCCChHHHHHHHHHhcCCC--hhhhHHH-----HHHHHhhccCCCC-----hHHHHHHHHHHHHHhhhCCCcc---
Q 008746 106 QRDCKDEDPMIRGLALRSLCSLR--VANLVEY-----LVGPLGLGLKDNN-----SYVRTVAVIGVLKLYHISAPTC--- 170 (555)
Q Consensus 106 ~kDL~~~n~~vr~lAL~~L~~i~--~~ei~~~-----l~~~i~~~l~d~~-----~~VRk~A~lal~kl~~~~p~~~--- 170 (555)
.+-+.++++.++..|+.+|+++. +++.-.. .++.+..++.+++ ..+.+.|+.++..+.+......
T Consensus 168 v~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 247 (529)
T 3tpo_A 168 ISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 247 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 99999999999999999999984 3443222 3566777776543 3467788888888876432221
Q ss_pred cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHc
Q 008746 171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK 250 (555)
Q Consensus 171 ~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~ 250 (555)
.....++.|..+ +.++|+.|+..|+.+|..+....... ...+.....+..|+..+...++..+...++.|..
T Consensus 248 ~~~~~lp~L~~L-L~~~~~~v~~~a~~aL~~l~~~~~~~-------~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~n 319 (529)
T 3tpo_A 248 AVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPNER-------IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 319 (529)
T ss_dssp HHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHHH-------HHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHH-hcCCcHHHHHHHHHHHHHhhhhhhhh-------HHHHHhccchHHHHHHhcCCChhHHHHHHHHHHH
Confidence 012356777777 68999999999999999998653321 0111122246667777888899999999999999
Q ss_pred cCCCChhHHHHH-----HHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHH
Q 008746 251 YVPLDSNEIFDI-----MNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLS 324 (555)
Q Consensus 251 ~~~~~~~~~~~i-----~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~ 324 (555)
+...++.....+ ++.+..++++.++.|..+|+.++..+....+.....+.+ .+.++|+.++.+.++.++..|..
T Consensus 320 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 320 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp HTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 876665544333 446778899999999999999999887654433233332 34566778888888889988888
Q ss_pred HHHHHHhh
Q 008746 325 HLHILVMR 332 (555)
Q Consensus 325 ~l~~l~~~ 332 (555)
.|..++..
T Consensus 400 aL~nl~~~ 407 (529)
T 3tpo_A 400 AITNYTSG 407 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 88776644
No 44
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.01 E-value=4.1e-09 Score=101.84 Aligned_cols=220 Identities=16% Similarity=0.101 Sum_probs=166.0
Q ss_pred chhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHH--H---HHHHHHHhHcCCCChHHHHHHHHHhcCCCh--hhhHH
Q 008746 62 SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLA--L---LTINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVE 134 (555)
Q Consensus 62 s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~--~---l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~ei~~ 134 (555)
.+.|+.+++.+.|+|.+++.-+--.+..+...+++.. + =++..+.+-|+++++.+|..|+.+|+++.. ++..+
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3458899999999999999888888855443333221 1 146788899999999999999999999864 33222
Q ss_pred -----HHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc---ccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 008746 135 -----YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (555)
Q Consensus 135 -----~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~---~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~ 206 (555)
..++.+.+++.++++.||..|+.++..+....+.. +.+.+.++.|..+ +.++|+.|+..|+.+|..++..+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL-LSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG-GGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHH-HhCCCHHHHHHHHHHHHHHHcCC
Confidence 26788889999999999999999999997644332 2345788899898 58899999999999999998654
Q ss_pred cccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHH-----HHHHHHHHhccCchHHHHHH
Q 008746 207 ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLST 281 (555)
Q Consensus 207 ~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~-----i~~~l~~~L~s~~~aV~~ea 281 (555)
+.. ...+.....+..|++.+.+.++..+...+..|..+...+++.... .++.+..++++.++.|..+|
T Consensus 170 ~~~-------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A 242 (252)
T 4db8_A 170 NEQ-------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242 (252)
T ss_dssp HHH-------HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTH
T ss_pred hHH-------HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHH
Confidence 321 111122235677888888889999999999999998666554333 45567778888888999999
Q ss_pred HHHHHHhc
Q 008746 282 IKVFLHLT 289 (555)
Q Consensus 282 i~~i~~l~ 289 (555)
+.++..+.
T Consensus 243 ~~~L~~l~ 250 (252)
T 4db8_A 243 QEALEKLQ 250 (252)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 88887664
No 45
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.00 E-value=3.8e-08 Score=103.47 Aligned_cols=240 Identities=9% Similarity=0.027 Sum_probs=146.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCC--CCchhHHHHHHHHHHhcCCC----------------ChHHHH
Q 008746 39 GIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSAT--SDIVLKKMCYLYVGNYAKVN----------------PDLALL 100 (555)
Q Consensus 39 ~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s--~~~~~Krl~yl~l~~~~~~~----------------~e~~~l 100 (555)
++.+.|+.+-+.+-.... .+.+.++......+.+ .+..+|.++-+++..+...+ ++..-.
T Consensus 13 ~d~~~r~~Ae~~L~~~~~--~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 90 (462)
T 1ibr_B 13 PDRLELEAAQKFLERAAV--ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARRE 90 (462)
T ss_dssp SCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHH
Confidence 455667777766544332 1233334444554433 36789999999998875432 233233
Q ss_pred HHHHHHhHcCCCChHHHHHHHHHhcCCCh---hh-hHHHHHHHHhhccCCC--ChHHHHHHHHHHHHHhhhC-CCccc--
Q 008746 101 TINFLQRDCKDEDPMIRGLALRSLCSLRV---AN-LVEYLVGPLGLGLKDN--NSYVRTVAVIGVLKLYHIS-APTCI-- 171 (555)
Q Consensus 101 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~---~e-i~~~l~~~i~~~l~d~--~~~VRk~A~lal~kl~~~~-p~~~~-- 171 (555)
+-+.+..-+.++++.+ ..+..+++.+.. |+ -.+.+++.+.+.+.++ ++.+|..|+.++..+.... |+...
T Consensus 91 ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 169 (462)
T 1ibr_B 91 VKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK 169 (462)
T ss_dssp HHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG
T ss_pred HHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH
Confidence 4466777788888777 666666666533 21 3456778888888888 9999999999999998755 44321
Q ss_pred CCCchHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 008746 172 DADFPPTLKHLMLNDP--DPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVA 249 (555)
Q Consensus 172 ~~~~~~~l~~lll~d~--d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~ 249 (555)
.+.+.+.+... ++|. ++.|+..|+.++..+...-.+ . .+.+. ...-.+..+...+.+.++-.+..+++.|.
T Consensus 170 ~~~ll~~l~~~-l~~~~~~~~vr~~a~~~l~~~~~~~~~----~-~~~~~-~~~~l~~~l~~~~~~~~~~vr~~~~~~l~ 242 (462)
T 1ibr_B 170 SNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKA----N-FDKES-ERHFIMQVVCEATQCPDTRVRVAALQNLV 242 (462)
T ss_dssp HHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHH----H-HTSHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHH----h-hhhhH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 02355666666 4676 799999999999876431000 0 00000 00102333444556677777777888777
Q ss_pred ccCCCChhH----HH-HHHHHHHHHhccCchHHHHHHHHHHHHh
Q 008746 250 KYVPLDSNE----IF-DIMNLLEDRLQHANGAVVLSTIKVFLHL 288 (555)
Q Consensus 250 ~~~~~~~~~----~~-~i~~~l~~~L~s~~~aV~~eai~~i~~l 288 (555)
.+....++. .. .+++.+...+++.++.|+..|+..+..+
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 243 KIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp HHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 654222111 12 4566666667788888888888766544
No 46
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.98 E-value=2.7e-08 Score=95.62 Aligned_cols=218 Identities=16% Similarity=0.092 Sum_probs=168.2
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHH-----HHHHHHhHcCCCChHHHHHHHHHhcCCCh--hhhHH---
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL-----TINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVE--- 134 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~ei~~--- 134 (555)
.+.+++++.+++.+++.-+...+..+...+++..-. ++..+.+-++++++.+|..|+.+|+++.. ++..+
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 456778888888889999999998888776643221 47888899999999999999999999864 33222
Q ss_pred --HHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc---cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc
Q 008746 135 --YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (555)
Q Consensus 135 --~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~---~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~ 209 (555)
..++.+.+++.++++.||..|+.++..+...+|+.. .+.+.++.+..+ +.++|+.|+..|+.+|..++..++..
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~-l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL-LTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 357888899999999999999999999986554432 234678888888 68999999999999999998754321
Q ss_pred chHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHH-----HHHHHHHHHhccCchHHHHHHHHH
Q 008746 210 SEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKV 284 (555)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~-----~i~~~l~~~L~s~~~aV~~eai~~ 284 (555)
...+.....+..|++.+.+.++..+...+..|..+...+++... ..++.+..++++.++.|..+|+.+
T Consensus 163 -------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 163 -------IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp -------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred -------HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 11122223677788888889999999999999999876554333 246778888899999999999988
Q ss_pred HHHhcC
Q 008746 285 FLHLTL 290 (555)
Q Consensus 285 i~~l~~ 290 (555)
+..+..
T Consensus 236 L~~l~~ 241 (252)
T 4hxt_A 236 LENIKS 241 (252)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 877654
No 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.92 E-value=1.3e-08 Score=98.36 Aligned_cols=219 Identities=17% Similarity=0.127 Sum_probs=158.3
Q ss_pred HHHHhHcCCCChHHHHHHHHHhcCCCh--hh----hH-HHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc---cC
Q 008746 103 NFLQRDCKDEDPMIRGLALRSLCSLRV--AN----LV-EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---ID 172 (555)
Q Consensus 103 n~l~kDL~~~n~~vr~lAL~~L~~i~~--~e----i~-~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~---~~ 172 (555)
+.+.+.|.++|+.+|..|+.+|.++-. .+ +. ...++.+.+++.++++.||..|+.++..+...+++.. .+
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 788999999999999999999976422 22 22 2356888899999999999999999999976444321 23
Q ss_pred CCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccC
Q 008746 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV 252 (555)
Q Consensus 173 ~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~ 252 (555)
.+.++.|..+ ++++|+.|+..|+.+|..++..++. . ...+.....+..|++.+.+.++..+...+..|..+.
T Consensus 95 ~g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~-----~--~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 95 AGALPALVQL-LSSPNEQILQEALWALSNIASGGNE-----Q--IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (252)
T ss_dssp TTHHHHHHHG-GGCSCHHHHHHHHHHHHHHTTSCHH-----H--HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCCch-----H--HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 5678888888 5888999999999999999765432 0 011222236777888888889999999999999998
Q ss_pred CCChhHHH-----HHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHHHH
Q 008746 253 PLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHL 326 (555)
Q Consensus 253 ~~~~~~~~-----~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~l 326 (555)
..+++... ..++.+..++++.++.|...|+.++..+....+.....+.+ .+.+.|..++.+.++.+|..|...|
T Consensus 167 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 167 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred cCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 76654432 24667888899999999999999999887543332222222 2344556666666777777776666
Q ss_pred HHH
Q 008746 327 HIL 329 (555)
Q Consensus 327 ~~l 329 (555)
..+
T Consensus 247 ~~l 249 (252)
T 4db8_A 247 EKL 249 (252)
T ss_dssp HTT
T ss_pred HHH
Confidence 543
No 48
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.79 E-value=8.6e-08 Score=89.77 Aligned_cols=186 Identities=18% Similarity=0.092 Sum_probs=132.3
Q ss_pred CCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHH-----HHHHHHhHcCCCChHHHHHHHHHhcCCC--hh
Q 008746 58 GIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL-----TINFLQRDCKDEDPMIRGLALRSLCSLR--VA 130 (555)
Q Consensus 58 G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~ 130 (555)
|++....++-+++++.++|..++.-+..++..+...+++..-. ++..+.+-|.++++.+|..|+.+|+++. .+
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 3444555777788999999999999999999998766664222 4678888999999999999999999985 34
Q ss_pred hhHHH-----HHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc---ccCCCchHHHHHHHhcCCChHHHHHHHHHHHHH
Q 008746 131 NLVEY-----LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (555)
Q Consensus 131 ei~~~-----l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~---~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i 202 (555)
+..+. .++.+.+++.++++.||+.|+.++..+...+++. +.+.+.++.|..+ +.++|+.|+..|+.+|..+
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL-LSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHH
Confidence 43222 4688889999999999999999999998655443 1236788999998 5888999999999999999
Q ss_pred HhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHcc
Q 008746 203 WSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (555)
Q Consensus 203 ~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~ 251 (555)
+..++.. ...+.....+..|.+.+.+.++-.+...+..|..+
T Consensus 166 ~~~~~~~-------~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 166 ASGGNEQ-------KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HTSCHHH-------HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HcCCcHH-------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 8653320 11111112344555555555566666666555544
No 49
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.75 E-value=9.4e-06 Score=91.06 Aligned_cols=339 Identities=12% Similarity=0.024 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcC---CCChHHHHHH
Q 008746 44 KRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK---DEDPMIRGLA 120 (555)
Q Consensus 44 k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~---~~n~~vr~lA 120 (555)
.-.+..-+=..|..|.-.+.++..-..++......-|--+-..+..+...+.+.. ...|.+-|- +.++++++-|
T Consensus 339 ~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~g---l~~L~~yL~~~~s~~~~ik~GA 415 (963)
T 4ady_A 339 FHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEG---KKVMAPYLPGSRASSRFIKGGS 415 (963)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTH---HHHHTTTSTTSCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHH---HHHHHHhccccCCCcHHHHHHH
Confidence 3334434444566787666544433445544444444445555556555555433 355566665 7789999999
Q ss_pred HHHhcCCChh---hhHHHHHHHHhhccCCCC--------hHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCCh
Q 008746 121 LRSLCSLRVA---NLVEYLVGPLGLGLKDNN--------SYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDP 189 (555)
Q Consensus 121 L~~L~~i~~~---ei~~~l~~~i~~~l~d~~--------~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~ 189 (555)
+-.+|-+... +..+.+ ...+.+++ +.||..|+++++-+|--.. +++..+.|...+ .|.+.
T Consensus 416 llaLGli~ag~~~~~~~lL----~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~----~eev~e~L~~~L-~dd~~ 486 (963)
T 4ady_A 416 LYGLGLIYAGFGRDTTDYL----KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA----NIEVYEALKEVL-YNDSA 486 (963)
T ss_dssp HHHHHHHTTTTTHHHHHHH----HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC----CHHHHHHHHHHH-HTCCH
T ss_pred HHHHHHhcCCCcHHHHHHH----HHHHcCccccccccccHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHH-hcCCH
Confidence 9999876432 333334 44444333 8999999999999874221 246778888874 66566
Q ss_pred HHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhc--CCCChhHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 008746 190 QVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI--KEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLE 267 (555)
Q Consensus 190 ~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l--~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~ 267 (555)
.++..|..+|.-+.--.. +...+..|+..+ ...++|.+. +.-.|+.....+++....+++.+.
T Consensus 487 ~~~~~AalALGli~vGTg--------------n~~ai~~LL~~~~e~~~e~vrR~-aalgLGll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 487 TSGEAAALGMGLCMLGTG--------------KPEAIHDMFTYSQETQHGNITRG-LAVGLALINYGRQELADDLITKML 551 (963)
T ss_dssp HHHHHHHHHHHHHHTTCC--------------CHHHHHHHHHHHHHCSCHHHHHH-HHHHHHHHTTTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccC--------------CHHHHHHHHHHHhccCcHHHHHH-HHHHHHhhhCCChHHHHHHHHHHH
Confidence 666566666665522111 011333333321 123455544 444455444445555554544443
Q ss_pred HHhccCchHHHHHHHHHHH-HhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccceeee
Q 008746 268 DRLQHANGAVVLSTIKVFL-HLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYC 346 (555)
Q Consensus 268 ~~L~s~~~aV~~eai~~i~-~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~~ 346 (555)
.+.++.|.+.++-++. .+...... .+ +...|-.+.++.+.++|..|.-.|..+....|+.....+..+
T Consensus 552 ---~~~dp~vRygaa~alglAyaGTGn~---~a---Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L-- 620 (963)
T 4ady_A 552 ---ASDESLLRYGGAFTIALAYAGTGNN---SA---VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLL-- 620 (963)
T ss_dssp ---HCSCHHHHHHHHHHHHHHTTTSCCH---HH---HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG--
T ss_pred ---hCCCHHHHHHHHHHHHHHhcCCCCH---HH---HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHH--
Confidence 3678889998877664 33322211 11 222333445677788999999999988766776543333322
Q ss_pred ccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCc-----HHHHHHHHHHHhhc
Q 008746 347 QYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD-----VNAIVDRLLQFLEM 420 (555)
Q Consensus 347 ~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~-----~~~~i~~ll~ll~~ 420 (555)
..+.++.+|+.+--.|..++..+.-..+++-|..+..+.|..++..++.++|.++...++ ...+...+.+....
T Consensus 621 ~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 621 SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITN 699 (963)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHC
T ss_pred HhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhc
Confidence 245568899999999988887777788889888888899999999999999999976433 23455555555543
No 50
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.67 E-value=6.7e-07 Score=90.47 Aligned_cols=260 Identities=11% Similarity=0.144 Sum_probs=116.8
Q ss_pred HHHhHcCCCChHHHHH---HHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHH
Q 008746 104 FLQRDCKDEDPMIRGL---ALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (555)
Q Consensus 104 ~l~kDL~~~n~~vr~l---AL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~ 180 (555)
.+.|-++++|...|-+ ++..++.. .++++ .+...+.+=++|+||+||-.|+-+++++- .|+.+ +.+.+.++
T Consensus 72 ~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~--~~~m~--~~l~~~lk 145 (355)
T 3tjz_B 72 AMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQIT--DSTML--QAIERYMK 145 (355)
T ss_dssp HHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHC--CTTTH--HHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCC--CHHHH--HHHHHHHH
Confidence 3345566666665543 34444444 23333 45555566666666666666666666663 44444 44555555
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHH
Q 008746 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF 260 (555)
Q Consensus 181 ~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~ 260 (555)
+. +.|+||.|+.+|+.+...+. +.+|+...
T Consensus 146 ~~-L~d~~pyVRk~A~l~~~kL~-------------------------------------------------~~~pe~v~ 175 (355)
T 3tjz_B 146 QA-IVDKVPSVSSSALVSSLHLL-------------------------------------------------KCSFDVVK 175 (355)
T ss_dssp HH-HTCSSHHHHHHHHHHHHHHT-------------------------------------------------TTCHHHHH
T ss_pred HH-cCCCCHHHHHHHHHHHHHHh-------------------------------------------------ccCHHHHH
Confidence 55 46666666666665554443 33444444
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCC---CchhHHHHHHHHHHHHhhC-Ccc
Q 008746 261 DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSG---SPEQSYAVLSHLHILVMRA-PFI 336 (555)
Q Consensus 261 ~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~---~~~~ry~aL~~l~~l~~~~-p~~ 336 (555)
.+++.+...+.+.|+.|++.|+.++.++..... ..+.+++.. +... ++-.+...++.+..+...+ |..
T Consensus 176 ~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~----~a~~kLv~~----l~~~~l~~~~~q~~llr~l~~~~~~d~~~~ 247 (355)
T 3tjz_B 176 RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR----LAVSKMISK----FTRHGLKSPFAYCMMIRVASRQLEDEDGSR 247 (355)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH----HHHHHHHHH----HHSSCCSCHHHHHHHHHHHTCC--------
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch----HHHHHHHHH----HhcCCCcChHHHHHHHHHHHHhccccchhh
Confidence 456667778888888888888888877765332 122232222 2221 1222222233332333333 222
Q ss_pred ccccccee-eeccCCcHHHHHHHHHHHHHccCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcH-HHHHH
Q 008746 337 FASDYKHF-YCQYNEPSYVKKLKLEMLTAVANESN--TYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-NAIVD 412 (555)
Q Consensus 337 ~~~~~~~f-~~~~~dd~~Ir~~aL~iL~~l~~~~N--~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~-~~~i~ 412 (555)
-...++.+ -++.+....|--.+...+..+.+... ....+.-|..|+.+.|++++--+++.|..++.++|+. ..+-.
T Consensus 248 ~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~ 327 (355)
T 3tjz_B 248 DSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNL 327 (355)
T ss_dssp ---------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC----------------
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 22222222 24556667788888887777744111 1122344556777778888888888888888888873 44556
Q ss_pred HHHHHhhcccchhHH
Q 008746 413 RLLQFLEMEKDYVTA 427 (555)
Q Consensus 413 ~ll~ll~~~~~~v~~ 427 (555)
.+..+++.++..+..
T Consensus 328 ~ie~li~d~n~sI~t 342 (355)
T 3tjz_B 328 DLENLVTDANRSIAT 342 (355)
T ss_dssp ---------------
T ss_pred HHHHHccCCcHhHHH
Confidence 666666665544443
No 51
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.66 E-value=5.5e-07 Score=84.17 Aligned_cols=188 Identities=18% Similarity=0.119 Sum_probs=136.2
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc---ccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccch
Q 008746 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (555)
Q Consensus 135 ~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~---~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~ 211 (555)
...+.+.+++.++++.||..|+.++..+...+++. +.+.+.++.|..+ +.++|+.|+..|+.+|..++..++.
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~--- 87 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL-LSSPNEQILQEALWALSNIASGGNE--- 87 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTSCHH---
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCCcH---
Confidence 34567778899999999999999999998654432 1234678888888 6888999999999999999754432
Q ss_pred HhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHH-----HHHHHHHHHhccCchHHHHHHHHHHH
Q 008746 212 EASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFL 286 (555)
Q Consensus 212 ~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~-----~i~~~l~~~L~s~~~aV~~eai~~i~ 286 (555)
. ...++....+..|++.+.+.++-.+...+..|..+...+++... ..++.+..++++.++.|...|+.++.
T Consensus 88 -~---~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 88 -Q---IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (210)
T ss_dssp -H---HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -H---HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 11112222567788888889999999999999999876654432 35677888899999999999999998
Q ss_pred HhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 008746 287 HLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (555)
Q Consensus 287 ~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~l~~l~ 330 (555)
.+....+.....+.+ ...+.|..++.+.++.++..|+..|..+.
T Consensus 164 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 164 NIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 887653333222222 23455677777778888888888776653
No 52
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.66 E-value=2e-06 Score=79.99 Aligned_cols=191 Identities=16% Similarity=0.131 Sum_probs=143.0
Q ss_pred CchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccC-
Q 008746 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV- 252 (555)
Q Consensus 174 ~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~- 252 (555)
+....+..+ +.|.|+.|+.+|+.++.++.+.-|+.. +...+ ...+..+++.+.+.++-.-++.+++|+.+.
T Consensus 33 ~~l~~L~~L-L~dkD~~vk~raL~~LeellK~~~~~l------~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe 104 (265)
T 3b2a_A 33 RALFLILEL-AGEDDETTRLRAFVALGEILKRADSDL------RMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVK 104 (265)
T ss_dssp HHHHHHHHH-TTSSCHHHHHHHHHHHHHHHHHSCHHH------HHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHH-HhccchHHHHHHHHHHHHHHHhccccc------cHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 355788887 699999999999999999988644310 11112 225667777788899999999999888873
Q ss_pred --CCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 008746 253 --PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (555)
Q Consensus 253 --~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~ 330 (555)
|-+++....+...+...+.+.+.....+|+..+..+.+... ..++.+.+.+++.|+++.+|-+|++.+..+.
T Consensus 105 ~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 105 DVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp TCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 55777888899999999999999999999999998855332 2356677888899999999999999999887
Q ss_pred hhC--Cccccccccee-eeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 008746 331 MRA--PFIFASDYKHF-YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTEL 378 (555)
Q Consensus 331 ~~~--p~~~~~~~~~f-~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL 378 (555)
... |+++..-.+.+ ....++|++++.+||+.|..+.+..=.+.++.++
T Consensus 179 ~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~ 229 (265)
T 3b2a_A 179 NSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL 229 (265)
T ss_dssp GGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH
Confidence 654 44443322211 2356778999999999999988775444444443
No 53
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.62 E-value=3.3e-06 Score=89.25 Aligned_cols=332 Identities=13% Similarity=0.132 Sum_probs=194.0
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHHhhhCCC---cccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHh
Q 008746 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (555)
Q Consensus 137 ~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~---~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~ 213 (555)
+|.+.++|.++++.+|..|+.++.++...+++ .+.+.+.++.|..+ ++++++.++..|+.+|..+...++. .
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~l-L~s~~~~~~~~A~~aL~nLa~~~~~----~ 78 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDL-LRSPNQNVQQAAAGALRNLVFRSTT----N 78 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHH----H
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCCHH----H
Confidence 34556777788889999999999998765554 22346778888888 5888999999999999999865332 1
Q ss_pred hhHHhhhccHHHHHHHHhhcC-CCChhHHHHHHHHHHccCCCCh-hH--HHHHHHHHHHHhc--------c--------C
Q 008746 214 SREREALISKPVIYYLLNRIK-EFSEWAQCLVLELVAKYVPLDS-NE--IFDIMNLLEDRLQ--------H--------A 273 (555)
Q Consensus 214 ~~~~~~ll~~~~~~~L~~~l~-~~~pw~q~~iL~~L~~~~~~~~-~~--~~~i~~~l~~~L~--------s--------~ 273 (555)
+..+.....+..|++.+. ..++-.|......|..+...+. .. ....++.+..++. + .
T Consensus 79 ---k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 79 ---KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp ---HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred ---HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 111122224666777777 6678888888888877654321 11 1245666667772 2 2
Q ss_pred chHHHHHHHHHHHHhcCCcchhHHHHHH--HHHHHHHHHhcC------CCchhHHHHHHHHHHHHhh----CC-------
Q 008746 274 NGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSS------GSPEQSYAVLSHLHILVMR----AP------- 334 (555)
Q Consensus 274 ~~aV~~eai~~i~~l~~~~~~~~~~~l~--~i~~~L~~ll~~------~~~~~ry~aL~~l~~l~~~----~p------- 334 (555)
++.|+..|+.++..+... ++....+.+ .+.++|..++.+ .+..+.-.++..+..+... .|
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 456788999999888765 433333332 345566666653 2344444444333322110 00
Q ss_pred -------------cccc---------------------c-cccee-----------eeccCCcHHHHHHHHHHHHHccCC
Q 008746 335 -------------FIFA---------------------S-DYKHF-----------YCQYNEPSYVKKLKLEMLTAVANE 368 (555)
Q Consensus 335 -------------~~~~---------------------~-~~~~f-----------~~~~~dd~~Ir~~aL~iL~~l~~~ 368 (555)
..|. + ..+.+ ....+.++.++..+.-.|..+|..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence 0000 0 00000 011234467788888888888754
Q ss_pred CC-H-----H------HHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcH----HHHHHHHHHHhhcccc------hhH
Q 008746 369 SN-T-----Y------EIVTELCEYAANVDIPIARESIRAVGKIALQQYDV----NAIVDRLLQFLEMEKD------YVT 426 (555)
Q Consensus 369 ~N-~-----~------~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~----~~~i~~ll~ll~~~~~------~v~ 426 (555)
++ . . .+++-|.+.+.+.+.++++++..+++.++..-... ...+..++++|..+.. .+.
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~ 394 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence 32 1 1 23455667777788888888888888887532111 2356778888876532 233
Q ss_pred HHHHHHHHHHHHhCCCCcc-----hHHHHHhhhcccCCCchHHHHHHHHHHhccccC
Q 008746 427 AEALVLVKDLLRKYPQWSH-----DCIAVVGSISSQNVQEPKAKAALIWMLGEYSQD 478 (555)
Q Consensus 427 ~e~i~~i~~ii~~~~~~~~-----~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~ 478 (555)
..++..+.+++...++... ..+..+.++.... .++++++.+.|++..|...
T Consensus 395 ~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~-~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 395 SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS-ASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCC-CcHHHHHHHHHHHHHHHcc
Confidence 3445556666665554221 1233344443111 2567888888888776643
No 54
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.56 E-value=1.8e-08 Score=87.40 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=89.4
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhcc
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL 144 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l 144 (555)
...+++++.+++..+|..+..++..+.. +. +..|.+-|+|+++.+|..|+++|+.++.++.+ +.+.+++
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~----~~L~~~L 82 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGD--EA-----FEPLLESLSNEDWRIRGAAAWIIGNFQDERAV----EPLIKLL 82 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSS--TT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHH----HHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCc--hH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHH
Confidence 5556778889999888877776665533 22 37888889999999999999999999987654 4555777
Q ss_pred CCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHH
Q 008746 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQE 201 (555)
Q Consensus 145 ~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~ 201 (555)
.|+++.||..|+.++.++.. ++.++.|..+ ++|+|+.|+..|..+|..
T Consensus 83 ~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~-l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIGG--------ERVRAAMEKL-AETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHH-TTSCCTHHHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHH-HhCCCHHHHHHHHHHHHh
Confidence 89999999999999999841 3456888887 589999999999888754
No 55
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.52 E-value=3.5e-08 Score=85.60 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=90.6
Q ss_pred HHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHH
Q 008746 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKH 181 (555)
Q Consensus 102 in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~ 181 (555)
++.+.+.|+|+|+.+|..|+.+|+.++.+. .+.+.+++.|+++.||..|+.++.++.. +..++.|..
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~~L~~ 80 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIK 80 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHHHHHH
Confidence 477888999999999999999999999876 2667788999999999999999998742 345678888
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHc
Q 008746 182 LMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK 250 (555)
Q Consensus 182 lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~ 250 (555)
+ ++|+|+.|+..|+.+|..+... ..+..|...+.+.++|.+......|.+
T Consensus 81 ~-L~d~~~~VR~~A~~aL~~~~~~------------------~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 81 L-LEDDSGFVRSGAARSLEQIGGE------------------RVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp H-HHHCCTHHHHHHHHHHHHHCSH------------------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred H-HcCCCHHHHHHHHHHHHHhCcH------------------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 7 5899999999999999987531 245556666778899999888887765
No 56
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.49 E-value=2.7e-06 Score=81.68 Aligned_cols=208 Identities=13% Similarity=0.050 Sum_probs=147.9
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHhhhCCCccc--CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhh
Q 008746 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASR 215 (555)
Q Consensus 138 ~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~--~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~ 215 (555)
+.+.+.+.|++..+|+.|+.++..+...+|.... -.++.+.+..++.+|+|+.|+..|+.++..++..-.. .+
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~~---- 92 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-RF---- 92 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-GG----
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-hH----
Confidence 4455778899999999999999999987665431 1245667777632499999999999999999864211 11
Q ss_pred HHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHh-cCCcch
Q 008746 216 EREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHL-TLSMTD 294 (555)
Q Consensus 216 ~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l-~~~~~~ 294 (555)
.-....++..+++.+.+.++-.+..+...|..+....+ ...+++.+...+++.++.|..+++..+..+ ....+.
T Consensus 93 ---~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 93 ---SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp ---HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred ---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 11112367778888999999888888888887764432 456788888899999999999999998874 332221
Q ss_pred -hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCc-ccccccceeeeccCCcHHHHHHHHHHH
Q 008746 295 -VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYKHFYCQYNEPSYVKKLKLEML 362 (555)
Q Consensus 295 -~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~-~~~~~~~~f~~~~~dd~~Ir~~aL~iL 362 (555)
.....+..+.+.|..+++++++++|-.|.+.+..+....+. .+.+++..+ + ..|+.++.-.
T Consensus 168 ~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L------~-~~~~~~i~~~ 230 (242)
T 2qk2_A 168 ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV------D-PLKMAKIKEC 230 (242)
T ss_dssp GCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS------C-HHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc------C-HHHHHHHHHH
Confidence 11234567778888889999999999999999988766543 466665532 2 2556555543
No 57
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.46 E-value=3.2e-05 Score=83.43 Aligned_cols=332 Identities=11% Similarity=0.103 Sum_probs=189.1
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHHhhhCCCc---ccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh-ccccchH
Q 008746 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL-EASTSEE 212 (555)
Q Consensus 137 ~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~---~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~-~~~~~~~ 212 (555)
++.+.++|.+.++.++..|+.++..+...+++. +.+...++.|..+ +..+++.|+..|+.+|..++.. ++.
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~L-L~s~~~~vq~~Aa~AL~nLa~~~~~~---- 124 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGL-LDHPKKEVHLGACGALKNISFGRDQD---- 124 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHTSSSCHH----
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHH-HCCCCHHHHHHHHHHHHHHHccCCHH----
Confidence 344556677777777777777777776433321 2234566777776 5777888888888888877652 121
Q ss_pred hhhHHhhhccHHHHHHHHhhcCC-CChhHHHHHHHHHHccCCCChhHHHH----HHHHHHHHh-----------------
Q 008746 213 ASREREALISKPVIYYLLNRIKE-FSEWAQCLVLELVAKYVPLDSNEIFD----IMNLLEDRL----------------- 270 (555)
Q Consensus 213 ~~~~~~~ll~~~~~~~L~~~l~~-~~pw~q~~iL~~L~~~~~~~~~~~~~----i~~~l~~~L----------------- 270 (555)
.+..+.....+..|+..|.. .++-.|..+...|..+...+ +.... -++.|..++
T Consensus 125 ---nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 125 ---NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp ---HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC---------
T ss_pred ---HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhcccccccccccccccc
Confidence 01111111245555555544 45556666666665554322 22211 233333333
Q ss_pred -ccCchHHHHHHHHHHHHhcCCcchhHHHHHH--HHHHHHHHHhcC------CCchhHHHHHHHHHHHHhh----CCcc-
Q 008746 271 -QHANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSS------GSPEQSYAVLSHLHILVMR----APFI- 336 (555)
Q Consensus 271 -~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~--~i~~~L~~ll~~------~~~~~ry~aL~~l~~l~~~----~p~~- 336 (555)
.+.++.|+..|+.++..+....++....+.+ -++..|+.++.+ .+......++..|..+... -|..
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~ 280 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE 280 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence 1224689999999999887654433333322 234456666642 2334455555555443322 1110
Q ss_pred -cc--------------c-cccee-----------eeccCCcHHHHHHHHHHHHHccCCC-----CH------HHHHHHH
Q 008746 337 -FA--------------S-DYKHF-----------YCQYNEPSYVKKLKLEMLTAVANES-----NT------YEIVTEL 378 (555)
Q Consensus 337 -~~--------------~-~~~~f-----------~~~~~dd~~Ir~~aL~iL~~l~~~~-----N~------~~Iv~eL 378 (555)
+. + .+..+ +......+.++..|...|..+|... .+ ...++-|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L 360 (584)
T 3l6x_A 281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360 (584)
T ss_dssp C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence 00 0 01100 1123456789999999999997643 11 2346667
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHhcccCcH----HHHHHHHHHHhhccc--------chhHHHHHHHHHHHHHhCCCCcch
Q 008746 379 CEYAANVDIPIARESIRAVGKIALQQYDV----NAIVDRLLQFLEMEK--------DYVTAEALVLVKDLLRKYPQWSHD 446 (555)
Q Consensus 379 ~~y~~~~d~~~~~~~i~~i~~la~~~~~~----~~~i~~ll~ll~~~~--------~~v~~e~i~~i~~ii~~~~~~~~~ 446 (555)
...+.+.+.+.++.++.+++.++.--... ...+..++++|..+. +.+...++..+.+|+..+++....
T Consensus 361 v~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~ 440 (584)
T 3l6x_A 361 ADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKK 440 (584)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 78888889999999999999999642221 246788888887652 233444555677777766654322
Q ss_pred -----HHHHHhhhcccCCCchHHHHHHHHHHhcccc
Q 008746 447 -----CIAVVGSISSQNVQEPKAKAALIWMLGEYSQ 477 (555)
Q Consensus 447 -----~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~ 477 (555)
.+..+.+++...-..+.+.+.++|++.....
T Consensus 441 I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 441 LRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 2344555542211367788889999976554
No 58
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.45 E-value=0.00027 Score=81.65 Aligned_cols=346 Identities=11% Similarity=0.095 Sum_probs=175.7
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHHHHhhh-CCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc--c
Q 008746 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST--S 210 (555)
Q Consensus 134 ~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~-~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~--~ 210 (555)
+.+-..+..++.++.+.||.+++.++..+.+. +|+.- |++++.|..+ ++.+|+..+.+++.++.++++..... .
T Consensus 84 ~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W--p~ll~~L~~~-l~s~~~~~~~~aL~~l~~i~~~~~~~~~~ 160 (960)
T 1wa5_C 84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW--PTLLSDLASR-LSNDDMVTNKGVLTVAHSIFKRWRPLFRS 160 (960)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC--TTHHHHHHTT-CCSSCTTHHHHHHHHHHHHHGGGTTSCCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch--hHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33444444555556699999999999999875 56543 6677888777 57778888999999999987642210 0
Q ss_pred hHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCch---------HHHHHH
Q 008746 211 EEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANG---------AVVLST 281 (555)
Q Consensus 211 ~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~---------aV~~ea 281 (555)
.+..+. +..++.. . ...+++++. .+...+++..+ .++..+
T Consensus 161 ~~~~~~---------l~~~l~~------~-~~~ll~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~ 209 (960)
T 1wa5_C 161 DELFLE---------IKLVLDV------F-TAPFLNLLK---------------TVDEQITANENNKASLNILFDVLLVL 209 (960)
T ss_dssp HHHHHH---------HHHHHHH------H-HHHHHHHHH---------------HHHHHTTCCC--CHHHHHHHHHHHHH
T ss_pred hHHHHH---------HHHHHHH------H-HHHHHHHHH---------------HHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 000000 0001100 0 000111111 00111111100 111223
Q ss_pred HHHHHHhcC-CcchhHHHHHHHHHHHHHHHhcCC------C---------chhHHHHHHHHHHHHhhCCcccccccceee
Q 008746 282 IKVFLHLTL-SMTDVHQQVYERIKAPLLTLVSSG------S---------PEQSYAVLSHLHILVMRAPFIFASDYKHFY 345 (555)
Q Consensus 282 i~~i~~l~~-~~~~~~~~~l~~i~~~L~~ll~~~------~---------~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~ 345 (555)
++++..+.. ..+......+....+.+..++... + ..+|-.+++.+..+...+|+.|.+|+..|+
T Consensus 210 ~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~ 289 (960)
T 1wa5_C 210 IKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFI 289 (960)
T ss_dssp HHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332211 111110111122223333333221 1 124556777788888888877766654331
Q ss_pred ------e----ccCCcHHHHHHHHHHHHHccCCCC----------HHHHH-HHHHHHhh----c-----CCH--------
Q 008746 346 ------C----QYNEPSYVKKLKLEMLTAVANESN----------TYEIV-TELCEYAA----N-----VDI-------- 387 (555)
Q Consensus 346 ------~----~~~dd~~Ir~~aL~iL~~l~~~~N----------~~~Iv-~eL~~y~~----~-----~d~-------- 387 (555)
+ ....+..++..+++.+...+.... +..++ .-+..++. + .|+
T Consensus 290 ~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~ 369 (960)
T 1wa5_C 290 QITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDL 369 (960)
T ss_dssp HHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhcc
Confidence 0 124457789999999998765422 33333 22222321 0 111
Q ss_pred ------HHHHHHHHHHHHHhcccCcH--HHHHHHHHHHhhc-----ccc-hhHHHHHHHHHHHHHhC--CC--Ccc----
Q 008746 388 ------PIARESIRAVGKIALQQYDV--NAIVDRLLQFLEM-----EKD-YVTAEALVLVKDLLRKY--PQ--WSH---- 445 (555)
Q Consensus 388 ------~~~~~~i~~i~~la~~~~~~--~~~i~~ll~ll~~-----~~~-~v~~e~i~~i~~ii~~~--~~--~~~---- 445 (555)
+.|..+...+..++..+++. ..++..+.+.+.. ..+ ...+.++..+..+.... ++ ...
T Consensus 370 e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~ 449 (960)
T 1wa5_C 370 EGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNL 449 (960)
T ss_dssp HC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTT
T ss_pred CcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccc
Confidence 24566777788888877642 2344444444442 111 22233444555554321 11 000
Q ss_pred -hHHHHHhhhcc---cCC--CchHHHHHHHHHHhccccCCCC--hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh
Q 008746 446 -DCIAVVGSISS---QNV--QEPKAKAALIWMLGEYSQDMQD--APYILESLTENWEEEPSAEVRLHLLTAVMKCFF 514 (555)
Q Consensus 446 -~~~~~l~~l~~---~~~--~~~~~~~~~~wiiGEy~~~~~~--~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~ 514 (555)
+....+.+.+. .+- ..+.+|..++|.+|.|++.+.. ...++..+++.+.+.+ +.||..+..|+..+.-
T Consensus 450 ~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~-~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 450 LNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE-YVVYTYAAITIEKILT 525 (960)
T ss_dssp CCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHh
Confidence 22233322211 111 2788899999999999987731 3345566667766655 9999999999988654
No 59
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.44 E-value=2.3e-05 Score=69.93 Aligned_cols=209 Identities=13% Similarity=0.076 Sum_probs=159.0
Q ss_pred HHHHhHcCCCChHHHHHHHHHhcCC--ChhhhHHHHHHHHhhccC-CCChHHHHHHHHHHHHHhhhCCCcccCCCchHHH
Q 008746 103 NFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (555)
Q Consensus 103 n~l~kDL~~~n~~vr~lAL~~L~~i--~~~ei~~~l~~~i~~~l~-d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l 179 (555)
..+.+-|.|.-+.++..||+.++.+ .-|++.+.+...+.-.++ +..-..-..-+-+++.+.+..|+.+ ...++.+
T Consensus 35 ~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v--~~vVp~l 112 (253)
T 2db0_A 35 KKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV--KSMIPVL 112 (253)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH--HHHHHHH
T ss_pred HHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH--HhhHHHH
Confidence 4555667777899999999999987 347888777766666543 4444555677788999999999987 5566666
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHH
Q 008746 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (555)
Q Consensus 180 ~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~ 259 (555)
..= ..=.||..+.+.-.+|.+|...+|.. . +.+++.+...+.+++.--....|.++.-.+-..++..
T Consensus 113 fan-yrigd~kikIn~~yaLeeIaranP~l-----------~-~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv 179 (253)
T 2db0_A 113 FAN-YRIGDEKTKINVSYALEEIAKANPML-----------M-ASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYV 179 (253)
T ss_dssp HHH-SCCCSHHHHHHHHHHHHHHHHHCHHH-----------H-HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHH
T ss_pred HHH-HhcCCccceecHHHHHHHHHHhChHH-----------H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCcccc
Confidence 554 34579999999999999999987741 1 2378888888999999999999999999988777777
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 008746 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (555)
Q Consensus 260 ~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~ 331 (555)
..+++.+..+|.+.|..|.-+|+.++.++....+.+...+..++ .. +++.+.-+++.+-+.+..+..
T Consensus 180 ~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl----~e-~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 180 NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRL----EE-LNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHH----HH-CCCSCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHH----HH-hcCcHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999876554422222222 22 455666677777777776653
No 60
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.37 E-value=0.00022 Score=75.20 Aligned_cols=328 Identities=11% Similarity=0.007 Sum_probs=206.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc-c------hhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHH-----HHHHH
Q 008746 39 GIDDSKRELFKKVISYMTIGIDV-S------AVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLT-----INFLQ 106 (555)
Q Consensus 39 ~~~~~k~~~l~kli~~~~~G~d~-s------~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~-----in~l~ 106 (555)
++.+.+..+. ..+..+..+.+- . .+++.+++++.+++..+++-+--++..+...+++.-..+ +..|.
T Consensus 14 ~~~~~q~~A~-~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv 92 (457)
T 1xm9_A 14 QDEKYQAIGA-YYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAV 92 (457)
T ss_dssp SCTHHHHHHH-HHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Confidence 3445666666 445556555432 2 246667889999999999999999999887666653433 67888
Q ss_pred hHcC-CCChHHHHHHHHHhcCCCh-----hhhHHHHHHHHhhccC--------C--------CChHHHHHHHHHHHHHhh
Q 008746 107 RDCK-DEDPMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGLK--------D--------NNSYVRTVAVIGVLKLYH 164 (555)
Q Consensus 107 kDL~-~~n~~vr~lAL~~L~~i~~-----~ei~~~l~~~i~~~l~--------d--------~~~~VRk~A~lal~kl~~ 164 (555)
+-|. ++++.++..|..+|+++.. ..+.+..+|.+.+++. + .++.|.+.|+.|+..+..
T Consensus 93 ~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~ 172 (457)
T 1xm9_A 93 SLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS 172 (457)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT
T ss_pred HHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHcc
Confidence 8888 8899999999999988733 2244567888888882 2 356788899999999876
Q ss_pred hCCCc---ccCC-CchHHHHHHHhc-----CCChHHHHHHHHHHHHHHhhc----cccch---------------Hhh--
Q 008746 165 ISAPT---CIDA-DFPPTLKHLMLN-----DPDPQVVANCLSALQEIWSLE----ASTSE---------------EAS-- 214 (555)
Q Consensus 165 ~~p~~---~~~~-~~~~~l~~lll~-----d~d~~V~~~a~~~L~~i~~~~----~~~~~---------------~~~-- 214 (555)
. |+. +.+. +.++.|..++.. +.|..++.+|+..|..++..- +.... ..|
T Consensus 173 ~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (457)
T 1xm9_A 173 A-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFS 251 (457)
T ss_dssp S-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--------------
T ss_pred C-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhh
Confidence 4 432 2222 778888877432 245556666666666553100 00000 000
Q ss_pred ---------------------h-HHhhhccHHHHHHHHhhcCC-CChhHHHHHHHHHHccCCCChh---HH-------HH
Q 008746 215 ---------------------R-EREALISKPVIYYLLNRIKE-FSEWAQCLVLELVAKYVPLDSN---EI-------FD 261 (555)
Q Consensus 215 ---------------------~-~~~~ll~~~~~~~L~~~l~~-~~pw~q~~iL~~L~~~~~~~~~---~~-------~~ 261 (555)
+ ....+++...++.|+..+.. .+|..+......|..++..+.. .. ..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~ 331 (457)
T 1xm9_A 252 NKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEK 331 (457)
T ss_dssp --------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSC
T ss_pred ccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcC
Confidence 0 01123344455656555543 3578888888888888754322 11 13
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHHhhCCc
Q 008746 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSP------EQSYAVLSHLHILVMRAPF 335 (555)
Q Consensus 262 i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~------~~ry~aL~~l~~l~~~~p~ 335 (555)
.++.+..+|++.+..|..+|+.++..+.... ..+..+-....++|+.+|.+.++ ++...++..+..++...++
T Consensus 332 ~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~ 410 (457)
T 1xm9_A 332 GLPQIARLLQSGNSDVVRSGASLLSNMSRHP-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ 410 (457)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH
T ss_pred CchHHHHHHhCCCHhHHHHHHHHHHHHhcCH-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH
Confidence 4567888999999999999999998886543 23222223566778888887654 4667788888877766554
Q ss_pred ccccc-----ccee-eeccCC-cHHHHHHHHHHHHHccCCC
Q 008746 336 IFASD-----YKHF-YCQYNE-PSYVKKLKLEMLTAVANES 369 (555)
Q Consensus 336 ~~~~~-----~~~f-~~~~~d-d~~Ir~~aL~iL~~l~~~~ 369 (555)
....- +..+ .+..+. +..+++.|..+|..++..+
T Consensus 411 ~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 411 LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 21110 1111 123344 5678888888888776554
No 61
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.33 E-value=0.00047 Score=75.91 Aligned_cols=437 Identities=13% Similarity=0.113 Sum_probs=259.1
Q ss_pred HHhcCCCChHHHHHHHHHHhHc--CCCChHHHHHHHHHhcCCCh--h-hhHHHHHHHHhhcc----C--CCChHHHHHHH
Q 008746 88 GNYAKVNPDLALLTINFLQRDC--KDEDPMIRGLALRSLCSLRV--A-NLVEYLVGPLGLGL----K--DNNSYVRTVAV 156 (555)
Q Consensus 88 ~~~~~~~~e~~~l~in~l~kDL--~~~n~~vr~lAL~~L~~i~~--~-ei~~~l~~~i~~~l----~--d~~~~VRk~A~ 156 (555)
..|....|++ +.+.+++ ....+.+|+.+|-..+.+.. + +..+.+...+..++ . +.+|++ .++
T Consensus 161 ~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~--~~~ 233 (778)
T 3opb_A 161 NKFKYNFKEV-----RFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLS--IIV 233 (778)
T ss_dssp HHSCCCSTTT-----THHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHH--HHH
T ss_pred HHcCccccch-----hhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHH--HHH
Confidence 3444566775 5566666 35678999999888887632 2 23333333333333 2 456665 455
Q ss_pred HHHHHHhhhCCCcc----cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhh
Q 008746 157 IGVLKLYHISAPTC----IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNR 232 (555)
Q Consensus 157 lal~kl~~~~p~~~----~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~ 232 (555)
.++..+|...|+.. ..+++.+.+.+.+...++..+..+++.+|...|.++ .|++. +.+.++.-|...
T Consensus 234 ~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~------~cR~~---I~~~~~~~L~~~ 304 (778)
T 3opb_A 234 KTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDE------TMRTY---ITENYLQLLERS 304 (778)
T ss_dssp HHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSH------HHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCc------HHHHH---HHHhHHHHHHHH
Confidence 56666787777754 457888888887656677888888888888777543 35332 334344444444
Q ss_pred cCCCChhHHHHHHHHHHccCCC---ChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHH--HHHHHH
Q 008746 233 IKEFSEWAQCLVLELVAKYVPL---DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPL 307 (555)
Q Consensus 233 l~~~~pw~q~~iL~~L~~~~~~---~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~--~i~~~L 307 (555)
+.. +-.+...+-.|.+.+.. ......++.+.+...+.+.+....--|+..+.+++.. ++++..+.. .+...|
T Consensus 305 l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~L 381 (778)
T 3opb_A 305 LNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEIL 381 (778)
T ss_dssp TTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHH
T ss_pred hcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHH
Confidence 433 45566666666665421 1123345777777788776655577788888777643 334433221 222335
Q ss_pred HHHhcC-CCchhHHHHHHHHHHHHhhCCcccc----------------c-------------ccc--------------e
Q 008746 308 LTLVSS-GSPEQSYAVLSHLHILVMRAPFIFA----------------S-------------DYK--------------H 343 (555)
Q Consensus 308 ~~ll~~-~~~~~ry~aL~~l~~l~~~~p~~~~----------------~-------------~~~--------------~ 343 (555)
+.++.+ .++.+.|-++..+.-+....|.... + ++. .
T Consensus 382 v~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~ 461 (778)
T 3opb_A 382 LTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISF 461 (778)
T ss_dssp HHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHH
Confidence 556663 6788999999998877665443211 0 000 0
Q ss_pred e-eeccCCcHHHHHHHHHHHHHccCCC-CHHHH-----HHHHHHHhhcCCHH---HHHHHHHHHHHHhccc-Cc------
Q 008746 344 F-YCQYNEPSYVKKLKLEMLTAVANES-NTYEI-----VTELCEYAANVDIP---IARESIRAVGKIALQQ-YD------ 406 (555)
Q Consensus 344 f-~~~~~dd~~Ir~~aL~iL~~l~~~~-N~~~I-----v~eL~~y~~~~d~~---~~~~~i~~i~~la~~~-~~------ 406 (555)
+ -+..+.+..+|..+..+|..++... |-..+ ++-|+.++.+.... .+..+..++++++... |.
T Consensus 462 Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~ 541 (778)
T 3opb_A 462 LKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKY 541 (778)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCC
Confidence 1 1234566788899999999987554 33333 45577888776433 7888999999988532 21
Q ss_pred -HHHHHHHHHHHhhc-ccc-------------hhHHHHHHHHHHHHHhCC----CCcch------HHHHHhhhcccCCCc
Q 008746 407 -VNAIVDRLLQFLEM-EKD-------------YVTAEALVLVKDLLRKYP----QWSHD------CIAVVGSISSQNVQE 461 (555)
Q Consensus 407 -~~~~i~~ll~ll~~-~~~-------------~v~~e~i~~i~~ii~~~~----~~~~~------~~~~l~~l~~~~~~~ 461 (555)
....+..++++|.. .+. ....+++.++.+|..... +.+.. +...+.+++. ..+
T Consensus 542 ~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~--s~n 619 (778)
T 3opb_A 542 SALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML--DEN 619 (778)
T ss_dssp CSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG--CSS
T ss_pred ccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh--CCC
Confidence 12467889999873 111 114577788888876431 12221 2334444442 246
Q ss_pred hHHHHHHHHHHhccccCCC---------ChHH---HHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchh------HHH
Q 008746 462 PKAKAALIWMLGEYSQDMQ---------DAPY---ILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPET------QKV 523 (555)
Q Consensus 462 ~~~~~~~~wiiGEy~~~~~---------~~~~---~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~------~~~ 523 (555)
+.++++++|++.-....-. ..+. -+..++.-...++ .++|.++..+++-+...+|... ...
T Consensus 620 ~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D-~~~r~AAagALAnLts~~~~ia~~ll~~~~g 698 (778)
T 3opb_A 620 VPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSD-VESQRAVAAIFANIATTIPLIAKELLTKKEL 698 (778)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCChHHHHHHHHcccc
Confidence 7789999999865432111 1122 2455655554555 9999999888887755454211 234
Q ss_pred HHHHHHHhcc-CCCcchhhccccc
Q 008746 524 LGAALAAGLA-DFHQVVFYGFFPP 546 (555)
Q Consensus 524 l~~vl~~~~~-d~d~evq~Ra~~~ 546 (555)
+..++..+.. ..|+++|.|+...
T Consensus 699 i~~Ll~lL~~~~~~~~l~~R~~~~ 722 (778)
T 3opb_A 699 IENAIQVFADQIDDIELRQRLLML 722 (778)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHH
Confidence 4555666554 2789999997654
No 62
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.29 E-value=7.8e-06 Score=78.46 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=91.4
Q ss_pred HHhHcCCCChHHHHHHHHHhcCCChh------hhHHHHHHHHhhccC-CCChHHHHHHHHHHHHHhhhCCCccc--CCCc
Q 008746 105 LQRDCKDEDPMIRGLALRSLCSLRVA------NLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPTCI--DADF 175 (555)
Q Consensus 105 l~kDL~~~n~~vr~lAL~~L~~i~~~------ei~~~l~~~i~~~l~-d~~~~VRk~A~lal~kl~~~~p~~~~--~~~~ 175 (555)
+...+.|.++..|-.|+..|+.+... .-...+.+.+.+.+. |+++.||..|+.|+..+.+.-...+. .+.+
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~i 99 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASAC 99 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44445555555555555555443110 111234455555553 66666666666666665532221110 0234
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccC-CC
Q 008746 176 PPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV-PL 254 (555)
Q Consensus 176 ~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~-~~ 254 (555)
++.+... +.|+++.|+.+|..++..+....+ + ..++..++..+.+.+|..+..++.+|.... ..
T Consensus 100 lp~ll~~-l~d~~~~vr~~a~~aL~~~~~~~~-------------~-~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 100 VPSLLEK-FKEKKPNVVTALREAIDAIYASTS-------------L-EAQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp HHHHHHG-GGCCCHHHHHHHHHHHHHHHTTSC-------------H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHHHHHHHcCC-------------H-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 4444444 356666666666666666544211 0 113444555555556666666666665532 11
Q ss_pred C-----hhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Q 008746 255 D-----SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (555)
Q Consensus 255 ~-----~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~ 289 (555)
+ ......+++.+...+.+.++.|+-.|..++..+.
T Consensus 165 ~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 165 QPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 1 1234567888888999999999999988887664
No 63
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.28 E-value=5.2e-05 Score=79.70 Aligned_cols=286 Identities=12% Similarity=0.086 Sum_probs=172.0
Q ss_pred hHHHHHHHHHHHHHhhhCCCcccC---CCch----------HHHHHHHhcCC--------ChHHH-------HHHHHHHH
Q 008746 149 SYVRTVAVIGVLKLYHISAPTCID---ADFP----------PTLKHLMLNDP--------DPQVV-------ANCLSALQ 200 (555)
Q Consensus 149 ~~VRk~A~lal~kl~~~~p~~~~~---~~~~----------~~l~~lll~d~--------d~~V~-------~~a~~~L~ 200 (555)
+.+|..|+.|+..+....|+.... ...+ +.+.+++ ... +| |. ..|+.+|.
T Consensus 96 ~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~qAv~aL~ 173 (458)
T 3nmz_A 96 KEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQ-EAHEPGMDQDKNP-MPAPVEHQICPAVCVLM 173 (458)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTSSSSCCCSCC---CCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHH-HhhccccccccCC-ccchhhHHHHHHHHHHH
Confidence 688888888888888777775410 0011 2222221 211 11 43 37888888
Q ss_pred HHHhhccccchHhhhHHhhhccHHHHHHHHhhcC-----------CCChhHHHHHHHHHHccCCCChhHH------HHHH
Q 008746 201 EIWSLEASTSEEASREREALISKPVIYYLLNRIK-----------EFSEWAQCLVLELVAKYVPLDSNEI------FDIM 263 (555)
Q Consensus 201 ~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~-----------~~~pw~q~~iL~~L~~~~~~~~~~~------~~i~ 263 (555)
.++.. +. +.+ .++....+..|+..+. ..++-.|......|..++..++... ...+
T Consensus 174 nls~~-~e-----~R~--~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 174 KLSFD-EE-----HRH--AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHTTS-HH-----HHH--HHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HhcCC-HH-----HHH--HHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 87543 11 111 1111113444444331 1235578888888888876654322 2347
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhcCC-cchhHHHHHH-HHHHHHHHH-hcCCCchhHHHHHHHHHHHHhhCCc----c
Q 008746 264 NLLEDRLQHANGAVVLSTIKVFLHLTLS-MTDVHQQVYE-RIKAPLLTL-VSSGSPEQSYAVLSHLHILVMRAPF----I 336 (555)
Q Consensus 264 ~~l~~~L~s~~~aV~~eai~~i~~l~~~-~~~~~~~~l~-~i~~~L~~l-l~~~~~~~ry~aL~~l~~l~~~~p~----~ 336 (555)
+.|..+|++.++.|...|+.++..+... ....+..+.+ ...++|+.+ +.+.+++++..++..+..+....++ +
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 7888899999999999999999888653 2233333332 245667776 4556788888888888777653321 1
Q ss_pred c-cc-ccceee-e-ccCCc---HHHHHHHHHHHHHcc-----CCCCHHHH-----HHHHHHHhhcCCHHHHHHHHHHHHH
Q 008746 337 F-AS-DYKHFY-C-QYNEP---SYVKKLKLEMLTAVA-----NESNTYEI-----VTELCEYAANVDIPIARESIRAVGK 399 (555)
Q Consensus 337 ~-~~-~~~~f~-~-~~~dd---~~Ir~~aL~iL~~l~-----~~~N~~~I-----v~eL~~y~~~~d~~~~~~~i~~i~~ 399 (555)
. .. -+..+. . ...++ ..++..+.-+|..++ +++|...+ +..|...+.+.+.+.+.+++.+|+.
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~n 405 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 405 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 1 11 011110 1 11222 147888888888876 44554443 4557777888888899999999999
Q ss_pred HhcccCcH-H-----HHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCc
Q 008746 400 IALQQYDV-N-----AIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWS 444 (555)
Q Consensus 400 la~~~~~~-~-----~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~ 444 (555)
++...++. . ..+..+.+++..+...+...+..++.+|...+|..+
T Consensus 406 La~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 406 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 88654432 1 257788888877767777788888888888777654
No 64
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.25 E-value=2.4e-05 Score=79.58 Aligned_cols=220 Identities=13% Similarity=0.071 Sum_probs=149.8
Q ss_pred CChHHHHHHHHHhcCCCh--h---hhH---HHHHHHHhhccCCCChHHHHHHHHHHHHHhhh-CC---CcccCCCchHHH
Q 008746 112 EDPMIRGLALRSLCSLRV--A---NLV---EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SA---PTCIDADFPPTL 179 (555)
Q Consensus 112 ~n~~vr~lAL~~L~~i~~--~---ei~---~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~-~p---~~~~~~~~~~~l 179 (555)
.++.++..|..+|.++.. . ..+ ...+|.+.++|.++++.||..|+.++..+... ++ +.+.+.+.++.|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 457788888888888742 2 222 34589999999999999999999999998653 22 223345778888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCC--hh--HHHHHHHHHHccCC--
Q 008746 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFS--EW--AQCLVLELVAKYVP-- 253 (555)
Q Consensus 180 ~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~--pw--~q~~iL~~L~~~~~-- 253 (555)
.++|+...++.++..|+.+|..++....+ ...... .....+..|.+.+...+ +| .+......|+.+..
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~----nk~~i~--~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~ 249 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTE----NKADIC--AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHH----HHHHHH--HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChh----hhHHHH--HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc
Confidence 88756777899999999999998763221 111111 01225666666665543 33 45555666655442
Q ss_pred -CChhHHH-----HHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHHHH
Q 008746 254 -LDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHL 326 (555)
Q Consensus 254 -~~~~~~~-----~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~l 326 (555)
.+++... ..++.+..+|++.+..+..+|+.++..+....++-...+.+ -..++|..++.++++.+|..|...|
T Consensus 250 a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL 329 (354)
T 3nmw_A 250 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329 (354)
T ss_dssp TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2333322 24677888899999999999999999887543333333332 3467788889888999999999999
Q ss_pred HHHHhhCCccc
Q 008746 327 HILVMRAPFIF 337 (555)
Q Consensus 327 ~~l~~~~p~~~ 337 (555)
..+....|...
T Consensus 330 ~nL~~~~~~~~ 340 (354)
T 3nmw_A 330 RNLMANRPAKY 340 (354)
T ss_dssp HHHHTTCCGGG
T ss_pred HHHHcCCHHHH
Confidence 99988776543
No 65
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.19 E-value=0.00041 Score=74.77 Aligned_cols=354 Identities=11% Similarity=0.057 Sum_probs=213.2
Q ss_pred CCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCc-------chhHHHhhhhcCCCCchhHHHHHHH
Q 008746 14 SQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDV-------SAVFGEMVMCSATSDIVLKKMCYLY 86 (555)
Q Consensus 14 ~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~-------s~lf~~vi~~~~s~~~~~Krl~yl~ 86 (555)
-.+.+.+++..+=..|++ ++.+.+.++.. .+..++.|.+- ....+..++++.+++..++.-+--+
T Consensus 42 ~~~~~~~~i~~LV~~L~s-------~~~~~q~~Aa~-~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~A 113 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGF-------RLDAVKSNAAA-YLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGA 113 (584)
T ss_dssp CCCCCCCCHHHHHHHTTC-------SCHHHHHHHHH-HHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHCC-------CCHHHHHHHHH-HHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHH
Confidence 445567777777666654 55567777774 46666665321 1246677899999999999999999
Q ss_pred HHHhcCC-CChHHHH-----HHHHHHhHcCC-CChHHHHHHHHHhcCCCh-----hhhHHHHHHHHhhcc----------
Q 008746 87 VGNYAKV-NPDLALL-----TINFLQRDCKD-EDPMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGL---------- 144 (555)
Q Consensus 87 l~~~~~~-~~e~~~l-----~in~l~kDL~~-~n~~vr~lAL~~L~~i~~-----~ei~~~l~~~i~~~l---------- 144 (555)
+..+... +++.-.. ++..|.+-|.+ +++.++..|..+|.++.. ..+++.-+|.+.+++
T Consensus 114 L~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~ 193 (584)
T 3l6x_A 114 LKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWERE 193 (584)
T ss_dssp HHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC--
T ss_pred HHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccc
Confidence 9998864 4443222 25677777775 567777776555554432 224444556666654
Q ss_pred --------CCCChHHHHHHHHHHHHHhhhCCCc----ccCCCchHHHHHHHh-----cCCChHHHHHHHHHHHHHHhhc-
Q 008746 145 --------KDNNSYVRTVAVIGVLKLYHISAPT----CIDADFPPTLKHLML-----NDPDPQVVANCLSALQEIWSLE- 206 (555)
Q Consensus 145 --------~d~~~~VRk~A~lal~kl~~~~p~~----~~~~~~~~~l~~lll-----~d~d~~V~~~a~~~L~~i~~~~- 206 (555)
...++.|++.|+-||..+...+++. ......++.|..++. .+.+...+.+|+.+|..++..-
T Consensus 194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~ 273 (584)
T 3l6x_A 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVH 273 (584)
T ss_dssp --------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccc
Confidence 1236799999999999987544331 112455666666532 2356667788888887765321
Q ss_pred ---ccc--chH-----------hhh-HHhhhccHHHHHHHHhhcC-CCChhHHHHHHHHHHccCCCChh---HH------
Q 008746 207 ---AST--SEE-----------ASR-EREALISKPVIYYLLNRIK-EFSEWAQCLVLELVAKYVPLDSN---EI------ 259 (555)
Q Consensus 207 ---~~~--~~~-----------~~~-~~~~ll~~~~~~~L~~~l~-~~~pw~q~~iL~~L~~~~~~~~~---~~------ 259 (555)
|.. ..+ ..+ ....+.+...++.|+..+. ..++..|......|..++..+.. ..
T Consensus 274 ~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~ 353 (584)
T 3l6x_A 274 REIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ 353 (584)
T ss_dssp HHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS
T ss_pred ccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 100 000 001 1112345556666666664 34788898888888888544311 11
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCC--------chhHHHHHHHHHHHHh
Q 008746 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGS--------PEQSYAVLSHLHILVM 331 (555)
Q Consensus 260 ~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~--------~~~ry~aL~~l~~l~~ 331 (555)
...++.|..+|++.+..|+..|+.++..+..... .+..+-....+.|+.+|.+.+ .++...|+..+..++.
T Consensus 354 ~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a 432 (584)
T 3l6x_A 354 EKALSAIADLLTNEHERVVKAASGALRNLAVDAR-NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA 432 (584)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh-HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence 2457788889999999999999999988765432 222222244566777776542 3567778888777765
Q ss_pred hCCcccc----cc-ccee-eeccC--CcHHHHHHHHHHHHHccCCCCHHHHHH
Q 008746 332 RAPFIFA----SD-YKHF-YCQYN--EPSYVKKLKLEMLTAVANESNTYEIVT 376 (555)
Q Consensus 332 ~~p~~~~----~~-~~~f-~~~~~--dd~~Ir~~aL~iL~~l~~~~N~~~Iv~ 376 (555)
..|+..+ .. +..+ .+..+ ....+++.|-.+|+.|++.+.....++
T Consensus 433 ~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~k 485 (584)
T 3l6x_A 433 ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLE 485 (584)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred CCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 5543211 10 1111 11222 356777888888888777654444433
No 66
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.18 E-value=2.6e-05 Score=75.37 Aligned_cols=209 Identities=14% Similarity=0.143 Sum_probs=140.6
Q ss_pred hhccCCCChHHHHHHHHHHHH-HhhhCCCccc-C---CCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhh
Q 008746 141 GLGLKDNNSYVRTVAVIGVLK-LYHISAPTCI-D---ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASR 215 (555)
Q Consensus 141 ~~~l~d~~~~VRk~A~lal~k-l~~~~p~~~~-~---~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~ 215 (555)
.+.+.++++.-||.|+.++.. +...+|.... . .++++.|...+-+|+|+.|+..|+.++..++..-....+.
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~--- 98 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS--- 98 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC---
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc---
Confidence 455688999999999999999 8866776541 1 2456677776338999999999999999997532100010
Q ss_pred HHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHcc---C-CCChh-HHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC
Q 008746 216 EREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY---V-PLDSN-EIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTL 290 (555)
Q Consensus 216 ~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~---~-~~~~~-~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~ 290 (555)
.-.+..++..+++.+++..+-.+-.+-..|..+ . |.... ....+++.+...++|.++.|..+++.++..+..
T Consensus 99 ---~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 99 ---KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp ---HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 001123567788888887776655444433333 2 21111 144688888899999999999999998876543
Q ss_pred Ccc---hhHHHHH-HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCc-ccccccceeeeccCCcHHHHHHHHHHH
Q 008746 291 SMT---DVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYKHFYCQYNEPSYVKKLKLEML 362 (555)
Q Consensus 291 ~~~---~~~~~~l-~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~-~~~~~~~~f~~~~~dd~~Ir~~aL~iL 362 (555)
..+ ..-...+ +.+.+.|..+++++++++|-.|.+.+..+....++ .+.+|+..+ + .+|+.++...
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L----d---~~k~~ki~~~ 245 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL----D---NLKRKKIEET 245 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS----C---HHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH----h---HHHHHHHHHH
Confidence 222 1111235 56777888899999999999999999988876544 577776653 2 2677776643
No 67
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.13 E-value=4.9e-05 Score=79.92 Aligned_cols=218 Identities=13% Similarity=0.058 Sum_probs=148.6
Q ss_pred CChHHHHHHHHHhcCCC--hh---hhH---HHHHHHHhhccCCCChHHHHHHHHHHHHHhhh-CC---CcccCCCchHHH
Q 008746 112 EDPMIRGLALRSLCSLR--VA---NLV---EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SA---PTCIDADFPPTL 179 (555)
Q Consensus 112 ~n~~vr~lAL~~L~~i~--~~---ei~---~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~-~p---~~~~~~~~~~~l 179 (555)
.++.++..|..+|.++. ++ ..+ ...+|.+.++|.++++.|+..|+.|+..+... ++ ..+.+.+.++.|
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 45778888888887763 22 222 34589999999999999999999999998642 22 233345778888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhc-cHHHHHHHHhhcCCCC--hh--HHHHHHHHHHccCC-
Q 008746 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALI-SKPVIYYLLNRIKEFS--EW--AQCLVLELVAKYVP- 253 (555)
Q Consensus 180 ~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll-~~~~~~~L~~~l~~~~--pw--~q~~iL~~L~~~~~- 253 (555)
..+|+...++.++..|+.+|..++....+ ... .+. ....+..|...+...+ +| .+.....+|+.+..
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~----nk~---~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~ 364 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTE----NKA---DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHH----HHH---HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHH----HHH---HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhc
Confidence 88756777899999999999988763221 011 111 2225566666665543 34 56556666665442
Q ss_pred --CChhHHHH-----HHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHHH
Q 008746 254 --LDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSH 325 (555)
Q Consensus 254 --~~~~~~~~-----i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~ 325 (555)
.+++.... .++.+..+|++.+..|..+|+.++..+....++-...+.+ -..++|..++.++++.++..|...
T Consensus 365 ~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~A 444 (458)
T 3nmz_A 365 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 444 (458)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 33333322 4567788899999999999999999887543333333332 345678888888899999999999
Q ss_pred HHHHHhhCCcc
Q 008746 326 LHILVMRAPFI 336 (555)
Q Consensus 326 l~~l~~~~p~~ 336 (555)
|..++...|.-
T Consensus 445 L~nL~~~~p~k 455 (458)
T 3nmz_A 445 LRNLMANRPAK 455 (458)
T ss_dssp HHHHHTCCSCC
T ss_pred HHHHHcCCHhh
Confidence 99998887753
No 68
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.10 E-value=6.2e-05 Score=74.55 Aligned_cols=175 Identities=17% Similarity=0.066 Sum_probs=118.2
Q ss_pred HHHHHHHHHhcCCCh-hhhHH-----HHHHHHhh-ccCCCChHHHHHHHHHHHHHhhhCCCc---ccCCCchHHHHHHHh
Q 008746 115 MIRGLALRSLCSLRV-ANLVE-----YLVGPLGL-GLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLML 184 (555)
Q Consensus 115 ~vr~lAL~~L~~i~~-~ei~~-----~l~~~i~~-~l~d~~~~VRk~A~lal~kl~~~~p~~---~~~~~~~~~l~~lll 184 (555)
.-|..|+..|..+.. .+... ..+|.+.+ +|.++++.||..|+.+++.+...+|.. +.+.+.++.|..+|.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 345556666555422 12211 13456667 999999999999999999999877643 234578888888854
Q ss_pred cCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHH
Q 008746 185 NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMN 264 (555)
Q Consensus 185 ~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~ 264 (555)
.++++.|+..|+.+|..++..++. ....+.. ...++
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~----------------~~~~~~~----------------------------~ggi~ 170 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEA----------------GLLQFLR----------------------------LDGFS 170 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHH----------------HHHHHHH----------------------------TTHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcH----------------HHHHHHH----------------------------CCCHH
Confidence 467899999999999988764321 0001100 01345
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhC
Q 008746 265 LLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (555)
Q Consensus 265 ~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~-~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~ 333 (555)
.|..+|++.+..|..+|+.++.++....++....+.+ .+.++|..+|.++++.++..++..+..++...
T Consensus 171 ~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 171 VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 6667778888889889988887775433333333332 35567888899899999999999999887553
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.10 E-value=0.00039 Score=78.17 Aligned_cols=305 Identities=10% Similarity=-0.014 Sum_probs=181.0
Q ss_pred CcchhHHHhhhhcC---CCCchhHHHHHHHHHHhcCCCCh-HHHHHHHHHHhHcC-CC---ChHHHHHHHHHhcCC----
Q 008746 60 DVSAVFGEMVMCSA---TSDIVLKKMCYLYVGNYAKVNPD-LALLTINFLQRDCK-DE---DPMIRGLALRSLCSL---- 127 (555)
Q Consensus 60 d~s~lf~~vi~~~~---s~~~~~Krl~yl~l~~~~~~~~e-~~~l~in~l~kDL~-~~---n~~vr~lAL~~L~~i---- 127 (555)
+....+..+-+.+. +++..+|.=+.+++........+ ..-+..+.+..+-. .. ++.+|.-|.-.||-+
T Consensus 389 ~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS 468 (963)
T 4ady_A 389 NLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS 468 (963)
T ss_dssp CTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC
T ss_pred chHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC
Confidence 44455666667776 66777888888888887655443 22233344433310 01 377887787788874
Q ss_pred ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 008746 128 RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 128 ~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~ 207 (555)
+.+++. ..+++.+.|.++.+|..|++|++.+|--..+ .+.+..|...+.++.+..|+..+..+|.-+.-.++
T Consensus 469 ~~eev~----e~L~~~L~dd~~~~~~~AalALGli~vGTgn----~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 469 ANIEVY----EALKEVLYNDSATSGEAAALGMGLCMLGTGK----PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp CCHHHH----HHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred CCHHHH----HHHHHHHhcCCHHHHHHHHHHHhhhhcccCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 335544 4455666777889999999999998752222 34555555544566677788888888887654443
Q ss_pred ccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHH--ccCCCChhHHHHHHH-HHHHHhccCchHHHHHHHHH
Q 008746 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVA--KYVPLDSNEIFDIMN-LLEDRLQHANGAVVLSTIKV 284 (555)
Q Consensus 208 ~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~--~~~~~~~~~~~~i~~-~l~~~L~s~~~aV~~eai~~ 284 (555)
. .++. .+..|.. +.+|..+.-..-.+. .....+.. .++ .|.....+.+..|...|+-.
T Consensus 541 e----~~~~--------li~~L~~---~~dp~vRygaa~alglAyaGTGn~~----aIq~LL~~~~~d~~d~VRraAVia 601 (963)
T 4ady_A 541 E----LADD--------LITKMLA---SDESLLRYGGAFTIALAYAGTGNNS----AVKRLLHVAVSDSNDDVRRAAVIA 601 (963)
T ss_dssp G----GGHH--------HHHHHHH---CSCHHHHHHHHHHHHHHTTTSCCHH----HHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred H----HHHH--------HHHHHHh---CCCHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHhccCCcHHHHHHHHHH
Confidence 2 1111 2222221 467777766555444 33333432 232 33344456677788888777
Q ss_pred HHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCc--ccccccceeeeccCCcHHHHHHHHHHH
Q 008746 285 FLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF--IFASDYKHFYCQYNEPSYVKKLKLEML 362 (555)
Q Consensus 285 i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~--~~~~~~~~f~~~~~dd~~Ir~~aL~iL 362 (555)
+..+....++. ..++ +..+..+.++.+||.|--++..+..-.|. ++. -+.. ...|.|..+|.-|+--|
T Consensus 602 LGlI~~g~~e~----v~rl---v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid-~L~~--L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 602 LGFVLLRDYTT----VPRI---VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAID-VLDP--LTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHTSSSCSS----HHHH---TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHH-HHHH--HHTCSSHHHHHHHHHHH
T ss_pred HHhhccCCHHH----HHHH---HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHH-HHHH--HccCCCHHHHHHHHHHH
Confidence 76654433321 1222 22355678999999999999877655543 111 1111 24677889999988877
Q ss_pred HHcc---CCC---CHHHHHHHHHHHhhc--CCHH--HHHHHHHHHHHHh
Q 008746 363 TAVA---NES---NTYEIVTELCEYAAN--VDIP--IARESIRAVGKIA 401 (555)
Q Consensus 363 ~~l~---~~~---N~~~Iv~eL~~y~~~--~d~~--~~~~~i~~i~~la 401 (555)
..+. |+. .+..++..|..|..+ .|+. |...+.+.|-..+
T Consensus 672 G~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 672 SMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp HHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred HHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 7764 333 477888888888865 3544 4444444443333
No 70
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.06 E-value=6.7e-05 Score=74.26 Aligned_cols=170 Identities=14% Similarity=0.032 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHhcCCCChHHH-----HHHHHHHh-HcCCCChHHHHHHHHHhcCCC--hhhh----H-HHHHHHHhhcc
Q 008746 78 VLKKMCYLYVGNYAKVNPDLAL-----LTINFLQR-DCKDEDPMIRGLALRSLCSLR--VANL----V-EYLVGPLGLGL 144 (555)
Q Consensus 78 ~~Krl~yl~l~~~~~~~~e~~~-----l~in~l~k-DL~~~n~~vr~lAL~~L~~i~--~~ei----~-~~l~~~i~~~l 144 (555)
+.|..+.-.+..+.+. .|.+- =.+..+.+ -|.++++.+|..|+.+||++. +++. + ...++.+.+++
T Consensus 55 e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 4555555555555542 22211 13456666 889999999999999999983 3432 2 13567888888
Q ss_pred C-CCChHHHHHHHHHHHHHhhhCCC---cccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhh
Q 008746 145 K-DNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREAL 220 (555)
Q Consensus 145 ~-d~~~~VRk~A~lal~kl~~~~p~---~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~l 220 (555)
. ++++.||++|+.|+..+.+.+|. .+.+.+.++.|..+ +.++|+.|+..|+.+|..++..++.. +..+
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~l-L~~~d~~v~~~A~~aLs~L~~~~~~~-------~~~v 205 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRA-MQQQVQKLKVKSAFLLQNLLVGHPEH-------KGTL 205 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH-HHSSCHHHHHHHHHHHHHHHHHCGGG-------HHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCChHH-------HHHH
Confidence 7 46899999999999999876654 23335678888888 58889999999999999998764431 1122
Q ss_pred ccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCCh
Q 008746 221 ISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS 256 (555)
Q Consensus 221 l~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~ 256 (555)
+....+..|+..+...++-.|...++.|..+....+
T Consensus 206 v~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence 323367788888888899999999999988765543
No 71
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.031 Score=61.61 Aligned_cols=370 Identities=14% Similarity=0.162 Sum_probs=212.2
Q ss_pred CCChHHHHHHHHHhcCCChhh-----hHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc-cCCCchHHHHHHHh
Q 008746 111 DEDPMIRGLALRSLCSLRVAN-----LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC-IDADFPPTLKHLML 184 (555)
Q Consensus 111 ~~n~~vr~lAL~~L~~i~~~e-----i~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~-~~~~~~~~l~~lll 184 (555)
.+++.+....|+.++..+..+ +.+...+.+.+.+.+ ..+|..|+.++.|+....+..- ...++.+.+.+++
T Consensus 267 ~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L- 343 (778)
T 3opb_A 267 EQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAI- 343 (778)
T ss_dssp SCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHT-
T ss_pred ccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH-
Confidence 355666677788887765533 456677788887754 6899999999999987543211 0134667777774
Q ss_pred cCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCC-CChhHHHHHHHHHHccCCCC--------
Q 008746 185 NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE-FSEWAQCLVLELVAKYVPLD-------- 255 (555)
Q Consensus 185 ~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~-~~pw~q~~iL~~L~~~~~~~-------- 255 (555)
.+++...+..|+..|.++.-. |. .+.... -+...+..|+..+.. .+.-.+..++.+|..+....
T Consensus 344 ~~~~~~~~~~AvEgLaYLSl~-~~----VKe~L~--~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~ 416 (778)
T 3opb_A 344 SRRIVPKVEMSVEALAYLSLK-AS----VKIMIR--SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXX 416 (778)
T ss_dssp TTCCHHHHHHHHHHHHHHTTS-SH----HHHHHH--HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred hcCCccHHHHHHHHHHHHhCC-HH----HHHHHH--hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhh
Confidence 555655688999999988542 21 111110 123346666666653 44445666666666553210
Q ss_pred -------------h------h------HH----------HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHH
Q 008746 256 -------------S------N------EI----------FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY 300 (555)
Q Consensus 256 -------------~------~------~~----------~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l 300 (555)
| . +. ...+..+..++.+.++.+.-.|++++..+..... .+..+.
T Consensus 417 ~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~-~R~~lv 495 (778)
T 3opb_A 417 XXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKN-FIPQLA 495 (778)
T ss_dssp ------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGG-GHHHHH
T ss_pred hhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHH
Confidence 0 0 00 0145566677888899999999999999876533 222333
Q ss_pred H-HHHHHHHHHhcCCCch---hHHHHHHHHHHHHh-hCCcc-cccccceeeeccCCcHHHHHHHHHHHHHccCC-CCHHH
Q 008746 301 E-RIKAPLLTLVSSGSPE---QSYAVLSHLHILVM-RAPFI-FASDYKHFYCQYNEPSYVKKLKLEMLTAVANE-SNTYE 373 (555)
Q Consensus 301 ~-~i~~~L~~ll~~~~~~---~ry~aL~~l~~l~~-~~p~~-~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~~-~N~~~ 373 (555)
+ -..++|+.++.+.... .|..|..+|..+.. .+|.. |.. + .. ..++.-|..+... .....
T Consensus 496 qqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~--------~-~~----~~aI~pLv~LL~~~~~~~~ 562 (778)
T 3opb_A 496 QQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKK--------Y-SA----LNAIPFLFELLPRSTPVDD 562 (778)
T ss_dssp HTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSS--------S-CS----TTHHHHHHHTSCCSSSCSS
T ss_pred HCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCC--------C-cc----ccchHHHHHHcCCCCCccc
Confidence 2 3345677777765444 79999999997763 34443 211 0 00 1344444444331 11000
Q ss_pred HHHHHHHHhhcC---CHHHHHHHHHHHHHHhcccC----cH-----H--HHHHHHHHHhhcccchhHHHHHHHHHHHHHh
Q 008746 374 IVTELCEYAANV---DIPIARESIRAVGKIALQQY----DV-----N--AIVDRLLQFLEMEKDYVTAEALVLVKDLLRK 439 (555)
Q Consensus 374 Iv~eL~~y~~~~---d~~~~~~~i~~i~~la~~~~----~~-----~--~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~ 439 (555)
.++.+. +.--+.+++.+++.+|..-. +. . ..+..+.+++...+..+...++..+.++..
T Consensus 563 ------~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~- 635 (778)
T 3opb_A 563 ------NPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS- 635 (778)
T ss_dssp ------CC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-
T ss_pred ------ccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-
Confidence 000000 01114456666666664321 00 1 245667777776666777777788887775
Q ss_pred CCCC-----c--c--h---HHHHHhhhcccCCCchHHHHHHHHHHhccccCCC-------ChHHHHHHHHHhhhc--CCc
Q 008746 440 YPQW-----S--H--D---CIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ-------DAPYILESLTENWEE--EPS 498 (555)
Q Consensus 440 ~~~~-----~--~--~---~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~-------~~~~~l~~l~~~~~~--e~~ 498 (555)
+|+. . + . -+.++..++ ...+.+.+.+++|.++--....+ ...+.++.+.+-+.+ ++
T Consensus 636 ~~e~i~~k~~~~~~~~~~~rL~lLV~Ll--~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~- 712 (778)
T 3opb_A 636 HPLTIAAKFFNLENPQSLRNFNILVKLL--QLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDD- 712 (778)
T ss_dssp SGGGTGGGTSCCSSHHHHHHHHHHHHGG--GCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTC-
T ss_pred CcHHHHHHHHhhcCchhhccHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCC-
Confidence 3321 0 0 1 134555665 44688899999999875422121 123445566666666 55
Q ss_pred HHHHHHHHHHHHHHHh
Q 008746 499 AEVRLHLLTAVMKCFF 514 (555)
Q Consensus 499 ~~vr~~~L~a~~Kl~~ 514 (555)
+++|.-++.++..+..
T Consensus 713 ~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 713 IELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988885
No 72
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.99 E-value=0.00082 Score=77.50 Aligned_cols=125 Identities=14% Similarity=0.068 Sum_probs=74.3
Q ss_pred cCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCC-------hhh----hHHHHHHHH
Q 008746 72 SATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR-------VAN----LVEYLVGPL 140 (555)
Q Consensus 72 ~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~e----i~~~l~~~i 140 (555)
..++|.+.|+-+.-++..+- .+|+....+..-+. .+.++.+|..|+.+|-+.- .++ +-+.++..+
T Consensus 34 ~~~~~~~~r~~A~~~L~~~~-~~p~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l 109 (963)
T 2x19_B 34 YYDPNIENKNLAQKWLMQAQ-VSPQAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQI 109 (963)
T ss_dssp HHCCCHHHHHHHHHHHHHHH-HSTTHHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHH
Confidence 34566777777777776653 34554222222222 2567778877777776531 112 233344444
Q ss_pred hhccCCCChHHHHHHHHHHHHHhhh-CCCcccCCCchHHHHHHHhcC-----CChHHHHHHHHHHHHHHh
Q 008746 141 GLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLND-----PDPQVVANCLSALQEIWS 204 (555)
Q Consensus 141 ~~~l~d~~~~VRk~A~lal~kl~~~-~p~~~~~~~~~~~l~~lll~d-----~d~~V~~~a~~~L~~i~~ 204 (555)
.+. .+..++||.+.+.++..+.+. +|+.- +++++.+..++ +. +++.....++..|..+..
T Consensus 110 ~~~-~~~~~~ir~kl~~~la~i~~~~~p~~W--p~~l~~l~~~~-~~~~~~~~~~~~~~~~l~iL~~l~e 175 (963)
T 2x19_B 110 TRF-ASGSKIVLTRLCVALASLALSMMPDAW--PCAVADMVRLF-QAEDSPVDGQGRCLALLELLTVLPE 175 (963)
T ss_dssp HHT-TTSCHHHHHHHHHHHHHHHHHHTTTTS--TTHHHHHHHHH-CC------CHHHHHHHHHHHHHHHH
T ss_pred HHH-cCCCHHHHHHHHHHHHHHHHHhCcccc--chHHHHHHHHH-hhhccCCCcHHHHHHHHHHHHhCHH
Confidence 332 224699999999999999875 36544 66777777763 43 255566777777776653
No 73
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00012 Score=70.58 Aligned_cols=136 Identities=13% Similarity=0.071 Sum_probs=105.1
Q ss_pred hhcCCCCchhHHHHHHHHHH-hcCCCChHH------HHHHHHHHhHc-CCCChHHHHHHHHHhcCCCh-------h-hhH
Q 008746 70 MCSATSDIVLKKMCYLYVGN-YAKVNPDLA------LLTINFLQRDC-KDEDPMIRGLALRSLCSLRV-------A-NLV 133 (555)
Q Consensus 70 ~~~~s~~~~~Krl~yl~l~~-~~~~~~e~~------~l~in~l~kDL-~~~n~~vr~lAL~~L~~i~~-------~-ei~ 133 (555)
..++|++-..|+-++..+.. +.+..+++. .-++..+.+-+ +|+|..+|..|+++++.+.. . ...
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~ 102 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 102 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 35579999999999999999 764433321 23478888999 79999999999999988632 1 455
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHHHHhhhC-CCccc--CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 008746 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-APTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (555)
Q Consensus 134 ~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~-p~~~~--~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~ 206 (555)
..++|.+...+.|+.+.||..|..|+-.++... |.... -+.+++.|... ++.+++.|+..++..+..+....
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~-l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEH-MKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHHc
Confidence 678999999999999999999999999998754 32210 13566777777 58889999999999999887643
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.92 E-value=0.00025 Score=63.36 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=63.2
Q ss_pred hcCCCchhHHHHHHHHHHHHhhCCccccccccee-eeccCCcHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHhhcCCHH
Q 008746 311 VSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF-YCQYNEPSYVKKLKLEMLTAVANESN-TYEIVTELCEYAANVDIP 388 (555)
Q Consensus 311 l~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f-~~~~~dd~~Ir~~aL~iL~~l~~~~N-~~~Iv~eL~~y~~~~d~~ 388 (555)
+.++|..-|.+||.-+..+-.+++..+.|++..+ ..++|+|..+|.-+.+.|..++..+. +..++..-.+-+.+.+..
T Consensus 153 ltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~l 232 (253)
T 2db0_A 153 LSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSL 232 (253)
T ss_dssp TSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHH
T ss_pred hcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHH
Confidence 4455555566666666666666666666776543 45678889999999999998865432 556666655556777777
Q ss_pred HHHHHHHHHHHHhc
Q 008746 389 IARESIRAVGKIAL 402 (555)
Q Consensus 389 ~~~~~i~~i~~la~ 402 (555)
+..++..++++++.
T Consensus 233 v~~~V~egL~rl~l 246 (253)
T 2db0_A 233 VNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887764
No 75
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.87 E-value=0.0032 Score=72.62 Aligned_cols=429 Identities=8% Similarity=0.011 Sum_probs=202.6
Q ss_pred cCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCC-------hh----hhHHHHHHHH
Q 008746 72 SATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR-------VA----NLVEYLVGPL 140 (555)
Q Consensus 72 ~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~----ei~~~l~~~i 140 (555)
+.++|...|+-+.-++..+ +.+|+.-..+..-+. .+.++.+|..|+.+|-+.- .+ .+-+.++..+
T Consensus 16 ~~~~d~~~r~~A~~~L~~~-~~~p~~w~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l 91 (971)
T 2x1g_F 16 FYRSNSQNQAITHEWLTDA-EASPQAWQFSWQLMQ---LGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESI 91 (971)
T ss_dssp HHTSTTTC----CHHHHHT-TTSTHHHHHHHHHTC---TTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH-HcCHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHH
Confidence 3456677788888888775 456775333332232 2578899998888876531 12 2334444444
Q ss_pred hhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCC------ChHHHHHHHHHHHHHHhh----ccccc
Q 008746 141 GLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDP------DPQVVANCLSALQEIWSL----EASTS 210 (555)
Q Consensus 141 ~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~------d~~V~~~a~~~L~~i~~~----~~~~~ 210 (555)
.+... ..++||.+.+.++..+.+.+-..- +++++.+..++ +.+ ++.....++..|..+... ++...
T Consensus 92 ~~~~~-~~~~vr~kl~~~la~i~~~~~p~W--p~~l~~l~~~~-~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~ 167 (971)
T 2x1g_F 92 VRFAG-GPKIVLNRLCISLGAYIVHMLGEW--PGAIEEVINTF-QNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVK 167 (971)
T ss_dssp HHHTT-SCHHHHHHHHHHHHHHHHHTTCC--------HHHHHH-HHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSC
T ss_pred HHhCC-CCHHHHHHHHHHHHHHHHHccccc--cHHHHHHHHHH-hccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHH
Confidence 44332 358999999999999987642122 55666666653 332 566666777777655431 11000
Q ss_pred hHhhhHHh-hhccH--HHHHHHHhhcCCCC----h-hHHHHHHHHHHccC-----CCChhHHHHHHHHHHHHhc------
Q 008746 211 EEASRERE-ALISK--PVIYYLLNRIKEFS----E-WAQCLVLELVAKYV-----PLDSNEIFDIMNLLEDRLQ------ 271 (555)
Q Consensus 211 ~~~~~~~~-~ll~~--~~~~~L~~~l~~~~----p-w~q~~iL~~L~~~~-----~~~~~~~~~i~~~l~~~L~------ 271 (555)
-....+.. ..+.. +.+..+++...... . -.+..+++.+..+. |.+ ....+++.+.. +.
T Consensus 168 r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~ 244 (971)
T 2x1g_F 168 RVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWP 244 (971)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccc
Confidence 00000000 00000 01222222211110 1 35677777776643 222 22345554444 31
Q ss_pred ----------cCchHHHHHHHHHHHHhcCC-c-ch---hHHHHHHHHHHHHHHH---hcCCCc---hhHHHHHHHHHHHH
Q 008746 272 ----------HANGAVVLSTIKVFLHLTLS-M-TD---VHQQVYERIKAPLLTL---VSSGSP---EQSYAVLSHLHILV 330 (555)
Q Consensus 272 ----------s~~~aV~~eai~~i~~l~~~-~-~~---~~~~~l~~i~~~L~~l---l~~~~~---~~ry~aL~~l~~l~ 330 (555)
+.++.+.-.|+.++..+-.. . .+ .-..++..+.+....+ +.+.|. +......+.+..+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~ 324 (971)
T 2x1g_F 245 CIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSV 324 (971)
T ss_dssp SCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHH
T ss_pred cccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 13445666666666554321 1 11 1112222222222222 233453 66666667666666
Q ss_pred hhCCcccc-----------ccc----ceee-ec-c----CCcHHHHHHHHHHHHHccCC----------CCH----HHHH
Q 008746 331 MRAPFIFA-----------SDY----KHFY-CQ-Y----NEPSYVKKLKLEMLTAVANE----------SNT----YEIV 375 (555)
Q Consensus 331 ~~~p~~~~-----------~~~----~~f~-~~-~----~dd~~Ir~~aL~iL~~l~~~----------~N~----~~Iv 375 (555)
..++..+. .++ ..++ +. . .++..+...+++.+..++.+ ... ...+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~ 404 (971)
T 2x1g_F 325 ERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLY 404 (971)
T ss_dssp HHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 55554433 222 1111 21 1 24556888898887776531 111 1222
Q ss_pred ----HHHHHHhhcC--------C-------HHHHHHHHHHHHHHhcccCcH--HHHHHHHHHHhhcc----cc-hhHHHH
Q 008746 376 ----TELCEYAANV--------D-------IPIARESIRAVGKIALQQYDV--NAIVDRLLQFLEME----KD-YVTAEA 429 (555)
Q Consensus 376 ----~eL~~y~~~~--------d-------~~~~~~~i~~i~~la~~~~~~--~~~i~~ll~ll~~~----~~-~v~~e~ 429 (555)
+.+..-+.-. | .++|+.+...+..++..+++. ..+++.+.+.+... .+ ...+.+
T Consensus 405 ~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaa 484 (971)
T 2x1g_F 405 AHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEAC 484 (971)
T ss_dssp HHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 2222222111 1 135666777777777766642 22334444444321 11 123333
Q ss_pred HHHHHHHHHhCCCC-cchHHHHHh---hhcccCCCchHHHHHHHHHHhccccCCCC----hHHHHHHHHHhhhcCCcHHH
Q 008746 430 LVLVKDLLRKYPQW-SHDCIAVVG---SISSQNVQEPKAKAALIWMLGEYSQDMQD----APYILESLTENWEEEPSAEV 501 (555)
Q Consensus 430 i~~i~~ii~~~~~~-~~~~~~~l~---~l~~~~~~~~~~~~~~~wiiGEy~~~~~~----~~~~l~~l~~~~~~e~~~~v 501 (555)
+..+..+...-++. ......++. .+. ....++.++..++|.+|.|+..... .+.++..+...+ + +.|
T Consensus 485 l~~l~~iae~~~~~~~~~l~~l~~~l~~l~-~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~---~~v 559 (971)
T 2x1g_F 485 IYSFQSVAEHFGGEEKRQIPRLMRVLAEIP-YEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N---SSM 559 (971)
T ss_dssp HHHHHHTTTC------CHHHHHHHHHHHSC-TTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H---SSC
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHhcC-ccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C---hHH
Confidence 44455544332221 111112222 221 1123788899999999999987642 445666666655 2 557
Q ss_pred HHHHHHHHHHHHhcC
Q 008746 502 RLHLLTAVMKCFFKR 516 (555)
Q Consensus 502 r~~~L~a~~Kl~~~~ 516 (555)
+..+-.++.++.-..
T Consensus 560 ~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 560 SAQATLGLKELCRDC 574 (971)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776433
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.86 E-value=0.00016 Score=67.31 Aligned_cols=178 Identities=10% Similarity=0.063 Sum_probs=134.1
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCccc---CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccch
Q 008746 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI---DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (555)
Q Consensus 135 ~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~---~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~ 211 (555)
.....+..++.|+++.|+-.|..++-.+.+.-|+... -.++.+.+.++ +.++|..|...|+.++..+....|
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~l-lk~~dEkval~A~r~L~~LLe~vp---- 107 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINA-LSQENEKVTIKALRALGYLVKDVP---- 107 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-CCSTTHHHHHHHHHHHHHHHTTCC----
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHcCCC----
Confidence 3456677889999999999999999999886444321 14567777777 689999999999999999987665
Q ss_pred HhhhHHhhhccHHHHHHHHh----hcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 008746 212 EASREREALISKPVIYYLLN----RIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLH 287 (555)
Q Consensus 212 ~~~~~~~~ll~~~~~~~L~~----~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~ 287 (555)
+++..|.++.+ .+...++-.+..+...+....+.+ ....+++.+..++.|.|.-|--.|++++..
T Consensus 108 ---------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~--~~~~V~~~l~sLl~Skd~~vK~agl~~L~e 176 (265)
T 3b2a_A 108 ---------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLE--DSKLVRTYINELVVSPDLYTKVAGFCLFLN 176 (265)
T ss_dssp ---------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC--CCHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCccc--chHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 23334444444 456789999999999999985543 245788889899999999999999999988
Q ss_pred hcCCcch--hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Q 008746 288 LTLSMTD--VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (555)
Q Consensus 288 l~~~~~~--~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~ 332 (555)
++....+ +-..++.. +..++++.|+.++-.||..+..++..
T Consensus 177 ia~~S~D~~i~~~I~~e----I~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 177 MLNSSADSGHLTLILDE----IPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HGGGCSSCCCGGGTTTT----HHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred hhcccCCHHHHHHHHHH----HHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 8764432 11112222 34568889999999999999988754
No 77
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.65 E-value=0.0042 Score=71.60 Aligned_cols=259 Identities=12% Similarity=0.154 Sum_probs=137.6
Q ss_pred hhHHHHHHHHHHhcCCCChHHH-HHHHHHHhHcC------CCChHHHHHHHHHhcCCCh---------h------hhHHH
Q 008746 78 VLKKMCYLYVGNYAKVNPDLAL-LTINFLQRDCK------DEDPMIRGLALRSLCSLRV---------A------NLVEY 135 (555)
Q Consensus 78 ~~Krl~yl~l~~~~~~~~e~~~-l~in~l~kDL~------~~n~~vr~lAL~~L~~i~~---------~------ei~~~ 135 (555)
+.|+-+.-++..+....++..+ .+.+.+..-++ ++|+..|-.|+.++|.+.. . ++.+.
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~ 455 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF 455 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred CcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH
Confidence 5677777777776665554433 33344443343 6788999999998877621 1 45454
Q ss_pred HHHHHhhccCCC---ChHHHHHHHHHHHHHhhhCC-CcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc-c--
Q 008746 136 LVGPLGLGLKDN---NSYVRTVAVIGVLKLYHISA-PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA-S-- 208 (555)
Q Consensus 136 l~~~i~~~l~d~---~~~VRk~A~lal~kl~~~~p-~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~-~-- 208 (555)
+...+...+.|+ +|+||..|+.+++++...-+ +.. ...++.+... +.|+++.|+.+|..+|..++.... .
T Consensus 456 l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l--~~~l~~l~~~-L~d~~~~V~~~A~~Al~~~~~~~~~~~~ 532 (960)
T 1wa5_C 456 FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL--IELMPILATF-LQTDEYVVYTYAAITIEKILTIRESNTS 532 (960)
T ss_dssp HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH--HHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHH--HHHHHHHHHH-hCCCChhHHHHHHHHHHHHHhccccccc
Confidence 555566666777 99999999999999875432 222 3344555555 478899999999999999876311 0
Q ss_pred cchHhhhHHhhhccHHHHHHHHhhcCCCC--h---hHHHHHHHHHHc----cCCCChhHHHHHHHHHHHHhc----c-Cc
Q 008746 209 TSEEASREREALISKPVIYYLLNRIKEFS--E---WAQCLVLELVAK----YVPLDSNEIFDIMNLLEDRLQ----H-AN 274 (555)
Q Consensus 209 ~~~~~~~~~~~ll~~~~~~~L~~~l~~~~--p---w~q~~iL~~L~~----~~~~~~~~~~~i~~~l~~~L~----s-~~ 274 (555)
...+.+.+...-.-.+.+..|+..+...+ | -....++..+.. +...-..-...+++.+...+. + .+
T Consensus 533 ~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~ 612 (960)
T 1wa5_C 533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSN 612 (960)
T ss_dssp CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCC
Confidence 00000000000011234555555444431 0 011233333333 221111123334444444332 2 23
Q ss_pred hHH---HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccc
Q 008746 275 GAV---VLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK 342 (555)
Q Consensus 275 ~aV---~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~ 342 (555)
+.. .++|+.+++... .++....+.+.+.+++...+.....+..--+++.+..++... .-+.+++.
T Consensus 613 ~~~~~~~~e~l~~l~~~~--~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~ 680 (960)
T 1wa5_C 613 PRFTHYTFESIGAILNYT--QRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIK 680 (960)
T ss_dssp HHHHHHHHHHHHHHHHTS--CGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTG
T ss_pred cHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHH
Confidence 333 577777776542 222223344556666666666555566655888888777665 33444443
No 78
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.62 E-value=0.0015 Score=66.31 Aligned_cols=210 Identities=13% Similarity=0.074 Sum_probs=146.6
Q ss_pred CchhHHHHHHHHHHhcCCCChHHH-H-----HHHHHHhHcCCCChHHHHHHHHHhcCCCh---hh----hHH-HHHHHHh
Q 008746 76 DIVLKKMCYLYVGNYAKVNPDLAL-L-----TINFLQRDCKDEDPMIRGLALRSLCSLRV---AN----LVE-YLVGPLG 141 (555)
Q Consensus 76 ~~~~Krl~yl~l~~~~~~~~e~~~-l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~---~e----i~~-~l~~~i~ 141 (555)
+..+++-+--++..+...+++.-. + ++..|.+-|.++++.++..|..+|+++.. ++ +.+ ..+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 456788888888888766543321 1 27888899999999999988888877632 22 221 2467777
Q ss_pred hc-cCCCChHHHHHHHHHHHHHhhhCCC---ccc-CCCchHHHHHHHhcCCCh----HHHHHHHHHHHHHHh---hcccc
Q 008746 142 LG-LKDNNSYVRTVAVIGVLKLYHISAP---TCI-DADFPPTLKHLMLNDPDP----QVVANCLSALQEIWS---LEAST 209 (555)
Q Consensus 142 ~~-l~d~~~~VRk~A~lal~kl~~~~p~---~~~-~~~~~~~l~~lll~d~d~----~V~~~a~~~L~~i~~---~~~~~ 209 (555)
++ +.+.++.+++.|+-++..+...+++ .+. ..+.++.|.+++ .+.++ .|+..|..+|..++. .++.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL-~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~- 254 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL-TYRSQTNTLAIIESGGGILRNVSSLIATNED- 254 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHT-TCCCSSSCCHHHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHh-ccCCCcccHHHHHHHHHHHHHHHhhccCCHH-
Confidence 86 4667899999999999888653322 221 467888888884 55443 488888888888864 2221
Q ss_pred chHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHH-----HHHHHHHHhccCchHHHHHHHHH
Q 008746 210 SEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKV 284 (555)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~-----i~~~l~~~L~s~~~aV~~eai~~ 284 (555)
. +..+.....+..|+..+...++-.|......|..+...+++.... .++.|..++++.+..+..+|+.+
T Consensus 255 ---~---~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~a 328 (354)
T 3nmw_A 255 ---H---RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 328 (354)
T ss_dssp ---H---HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred ---H---HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 0 112222236778888888888889999999999988655554433 35677788889999999999888
Q ss_pred HHHhcCCcc
Q 008746 285 FLHLTLSMT 293 (555)
Q Consensus 285 i~~l~~~~~ 293 (555)
+..+....+
T Consensus 329 L~nL~~~~~ 337 (354)
T 3nmw_A 329 LRNLMANRP 337 (354)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCH
Confidence 887765443
No 79
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.27 E-value=0.069 Score=61.43 Aligned_cols=171 Identities=11% Similarity=0.085 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhc----CCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHH
Q 008746 150 YVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLN----DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPV 225 (555)
Q Consensus 150 ~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~----d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~ 225 (555)
.-|+.+..++..++...++.+. +.+.+.+...+.. ..+...+-+|+.++..++..-... ....+ .+.
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l-~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~-------~~~~l-~~l 506 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYIL-EILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGE-------EKRQI-PRL 506 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHH-HHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------------CHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChh-------hhHHH-HHH
Confidence 4678888888888876664321 3344455554311 267788999999998886532210 00001 112
Q ss_pred HHHHHhhcC--CCChhHHHHHHHHHHccC---CCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcc-hhHHHH
Q 008746 226 IYYLLNRIK--EFSEWAQCLVLELVAKYV---PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT-DVHQQV 299 (555)
Q Consensus 226 ~~~L~~~l~--~~~pw~q~~iL~~L~~~~---~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~-~~~~~~ 299 (555)
+. ++..+. +..|.++...+.++++|. ..+++....+++.+...+ + +.|.-.|+.++..+..... .+. ..
T Consensus 507 ~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~-p~ 581 (971)
T 2x1g_F 507 MR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLK-PY 581 (971)
T ss_dssp HH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHH-HH
T ss_pred HH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhcc-cc
Confidence 33 444445 458889999999999885 233444566677766666 2 5566677777665543211 121 12
Q ss_pred HHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHhhCC
Q 008746 300 YERIKAPLLTLVSS--GSPEQSYAVLSHLHILVMRAP 334 (555)
Q Consensus 300 l~~i~~~L~~ll~~--~~~~~ry~aL~~l~~l~~~~p 334 (555)
++.+...+..++++ -+.+.+..+++.+..++...|
T Consensus 582 ~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 582 ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 23334444455554 246778888888888876543
No 80
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.004 Score=60.71 Aligned_cols=175 Identities=11% Similarity=0.091 Sum_probs=120.1
Q ss_pred hhcCCCCchhHHHHHHHHHHhcCCCChH---------HHHHHHHHHhHcCCCChHHHHHHHHHhcCCC------------
Q 008746 70 MCSATSDIVLKKMCYLYVGNYAKVNPDL---------ALLTINFLQRDCKDEDPMIRGLALRSLCSLR------------ 128 (555)
Q Consensus 70 ~~~~s~~~~~Krl~yl~l~~~~~~~~e~---------~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~------------ 128 (555)
.-+.|++-..|.-||-.+...+...+.. ..-....+.+-+.|.|..+...|+.++..+.
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 5678999999999999887766543221 1123457888999999999999988886531
Q ss_pred hhhhHHHHHHHHh-hccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 008746 129 VANLVEYLVGPLG-LGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 129 ~~ei~~~l~~~i~-~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~ 207 (555)
....+..++|.+. +++.|+.+-+|..|..++..+....... ..+.+.+... ++.++|.|+..++..|..+...-.
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~-l~~Knpkv~~~~l~~l~~~l~~fg 171 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPF-FEKKLPKLIAAAANCVYELMAAFG 171 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGG-GGCSCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHhC
Confidence 1123455666655 5789999999999999998887543221 2355677776 588999999999888877654211
Q ss_pred ccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChh-HHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 008746 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN-EIFDIMNLLEDRLQHANGAVVLSTIKVFL 286 (555)
Q Consensus 208 ~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~-~~~~i~~~l~~~L~s~~~aV~~eai~~i~ 286 (555)
. . .. ++. ....++..+..++.++|+.|+-+|++++.
T Consensus 172 ~----------~---------------~~------------------~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~ 208 (278)
T 4ffb_C 172 L----------T---------------NV------------------NVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIV 208 (278)
T ss_dssp T----------T---------------TC------------------CHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHH
T ss_pred C----------C---------------cC------------------CchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 0 0 00 111 12234556677889999999999999988
Q ss_pred HhcCC
Q 008746 287 HLTLS 291 (555)
Q Consensus 287 ~l~~~ 291 (555)
.+...
T Consensus 209 ~ly~~ 213 (278)
T 4ffb_C 209 EIYKV 213 (278)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 76543
No 81
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.20 E-value=0.16 Score=58.48 Aligned_cols=84 Identities=7% Similarity=0.038 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhccccCCCC-----------hHHHHHHHHHhh----hcCCcHHHHHHHHHHHHHHHh---cCCchhHHH
Q 008746 462 PKAKAALIWMLGEYSQDMQD-----------APYILESLTENW----EEEPSAEVRLHLLTAVMKCFF---KRPPETQKV 523 (555)
Q Consensus 462 ~~~~~~~~wiiGEy~~~~~~-----------~~~~l~~l~~~~----~~e~~~~vr~~~L~a~~Kl~~---~~p~~~~~~ 523 (555)
++-+.++++.+|-+|+.+.+ .|.++..+..-. ...+.+.||.+...++++..- .+|+-....
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~ 536 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPAL 536 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 34466777776666665432 345554443332 223339999999999988633 345434444
Q ss_pred HHHHHH-HhccCCCcchhhcccc
Q 008746 524 LGAALA-AGLADFHQVVFYGFFP 545 (555)
Q Consensus 524 l~~vl~-~~~~d~d~evq~Ra~~ 545 (555)
+..+++ .+..+.+..||.||+-
T Consensus 537 L~~ll~~~gl~~~~~~V~~~a~~ 559 (980)
T 3ibv_A 537 IEYFVGPRGIHNTNERVRPRAWY 559 (980)
T ss_dssp HHHHTSTTTTTCCCTTTHHHHHH
T ss_pred HHHHhccccccCCChhHHHHHHH
Confidence 544443 2445677889998753
No 82
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.12 E-value=0.26 Score=56.44 Aligned_cols=323 Identities=12% Similarity=0.096 Sum_probs=179.1
Q ss_pred HHHHHHHhHc----CCCChHHHHHHHHHhcCCCh------hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhh---C
Q 008746 100 LTINFLQRDC----KDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI---S 166 (555)
Q Consensus 100 l~in~l~kDL----~~~n~~vr~lAL~~L~~i~~------~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~---~ 166 (555)
.+.+.+..-+ .++++..+..|+.++|.+.. .+..+.+++.+.. +.+++|.||..|+.+++++... +
T Consensus 445 ~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~ 523 (963)
T 2x19_B 445 NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADH 523 (963)
T ss_dssp HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 3345555555 66789999989998888643 2345556665444 4557899999999999987653 3
Q ss_pred CCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcC--CCChhHHHHH
Q 008746 167 APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK--EFSEWAQCLV 244 (555)
Q Consensus 167 p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~--~~~pw~q~~i 244 (555)
|+.+ +..++.+... +.| +.|+..|..+|..+++..+....+. + .+++..+...+. +.++-.+..+
T Consensus 524 ~~~l--~~vl~~l~~~-l~~--~~V~~~A~~al~~l~~~~~~~l~p~-------~-~~il~~l~~~l~~~~~~~~~~~~~ 590 (963)
T 2x19_B 524 PVMI--NSVLPLVLHA-LGN--PELSVSSVSTLKKICRECKYDLPPY-------A-ANIVAVSQDVLMKQIHKTSQCMWL 590 (963)
T ss_dssp HHHH--TTTHHHHHHH-TTC--GGGHHHHHHHHHHHHHHTGGGCTTT-------H-HHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHH--HHHHHHHHHH-hCC--chHHHHHHHHHHHHHHHHHHHHHhh-------H-HHHHHHHHHHhccCCCChHHHHHH
Confidence 4444 6677777777 454 8899999999999986432210000 1 123344444333 2456678888
Q ss_pred HHHHHccCCCC-hhHHH----HHHHHHHHHh----ccC-chH------HHHHHHHHHHH-hcCCc---------------
Q 008746 245 LELVAKYVPLD-SNEIF----DIMNLLEDRL----QHA-NGA------VVLSTIKVFLH-LTLSM--------------- 292 (555)
Q Consensus 245 L~~L~~~~~~~-~~~~~----~i~~~l~~~L----~s~-~~a------V~~eai~~i~~-l~~~~--------------- 292 (555)
++.++.....- +++.. .+++.+...+ ++. ++. ..++++..++. +....
T Consensus 591 ~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 670 (963)
T 2x19_B 591 MQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPV 670 (963)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC-------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCC
Confidence 88777764322 23332 2333333322 221 221 34555655443 22211
Q ss_pred ---chhHHHHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHhhCCcccccccceee-------eccCCcHHHHHHHHH
Q 008746 293 ---TDVHQQVYERIKAPLLTLVS--SGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY-------CQYNEPSYVKKLKLE 360 (555)
Q Consensus 293 ---~~~~~~~l~~i~~~L~~ll~--~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~-------~~~~dd~~Ir~~aL~ 360 (555)
+........++.+.+..++. ..++.+...+.+.+..++...++-+.+++..+. -....+. .+.
T Consensus 671 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~-----~l~ 745 (963)
T 2x19_B 671 PQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQAS-----ALD 745 (963)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHH-----HHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccH-----HHH
Confidence 11112234455555444443 245677777888888777666655555543211 0111222 333
Q ss_pred HHHHccC----CC----CHHHHHHHHHHHh-----hc--CCHHHHHHHHHHHHHHhcccCc--------HHHHHHHHHHH
Q 008746 361 MLTAVAN----ES----NTYEIVTELCEYA-----AN--VDIPIARESIRAVGKIALQQYD--------VNAIVDRLLQF 417 (555)
Q Consensus 361 iL~~l~~----~~----N~~~Iv~eL~~y~-----~~--~d~~~~~~~i~~i~~la~~~~~--------~~~~i~~ll~l 417 (555)
++..++. +. .+..+++.+...+ .+ .+++++......++.+...+|. ...+++.++..
T Consensus 746 l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 825 (963)
T 2x19_B 746 LTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLA 825 (963)
T ss_dssp HHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHH
Confidence 3333322 22 2333444443322 22 3588999888888888876653 12355566666
Q ss_pred hhcccchhHHHHHHHHHHHHHhCC
Q 008746 418 LEMEKDYVTAEALVLVKDLLRKYP 441 (555)
Q Consensus 418 l~~~~~~v~~e~i~~i~~ii~~~~ 441 (555)
+......+...++..+..++...+
T Consensus 826 l~~~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 826 LKFPEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCC
Confidence 665445566667777777776654
No 83
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.09 E-value=0.092 Score=60.99 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhccccCCCC----hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcC
Q 008746 463 KAKAALIWMLGEYSQDMQD----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKR 516 (555)
Q Consensus 463 ~~~~~~~wiiGEy~~~~~~----~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~ 516 (555)
.++..++|++|.|+..... .+.+++.+.+.+.+.. +.|+..+-.++.++.-..
T Consensus 515 ~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~-~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 515 VVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETH-EGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHH
Confidence 3344689999999977533 3345555666554445 999999999998886543
No 84
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.014 Score=56.81 Aligned_cols=189 Identities=14% Similarity=0.104 Sum_probs=117.5
Q ss_pred HhhccCCCChHHHHHHHHHHHHHhhhCCCccc-------CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchH
Q 008746 140 LGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI-------DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (555)
Q Consensus 140 i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~-------~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~ 212 (555)
+...+.|++--+|+.|+..+.+++...|.... -..+...+++. +.|+|..|...++.++..+...-.....
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~-l~DsN~~v~~~al~~l~~~~~~~~~~~~- 91 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQY-ITDSNVVAQEQAIVALNSLIDAFASSSL- 91 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHH-TTCSSHHHHHHHHHHHHHHHTTCC---C-
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHhhhhhc-
Confidence 34668999999999999999999876543321 02345677777 6999999999999999887653211000
Q ss_pred hhhHHhhhccHHHHHHHHhh-cCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHh---
Q 008746 213 ASREREALISKPVIYYLLNR-IKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHL--- 288 (555)
Q Consensus 213 ~~~~~~~ll~~~~~~~L~~~-l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l--- 288 (555)
......... ..++..|+.. +++..+-.....+..+..+.... .....+++.+...+.+.||-|+.+++..+..+
T Consensus 92 ~~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 92 KNAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp CHHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 000000001 1245556654 67777766666666554442111 01123567777888999999999988887543
Q ss_pred -cCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhC
Q 008746 289 -TLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (555)
Q Consensus 289 -~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~ 333 (555)
+...-.. ...++.+...+..+++++++++|-.|.+.+..+....
T Consensus 170 fg~~~~~~-k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 170 FGLTNVNV-QTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HTTTTCCH-HHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred hCCCcCCc-hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 2211111 1233445556677889999999999999998886543
No 85
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.89 E-value=0.88 Score=53.56 Aligned_cols=122 Identities=9% Similarity=0.050 Sum_probs=70.7
Q ss_pred CchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCC-------hhhh----HHHHHHHHhhcc
Q 008746 76 DIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR-------VANL----VEYLVGPLGLGL 144 (555)
Q Consensus 76 ~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~ei----~~~l~~~i~~~l 144 (555)
+...|+-+.-++..+.. +|+....+.-.+. -.+.++.+|..|+..|-+.- .++- -+.++..+.+..
T Consensus 26 ~~~~r~~Ae~~L~~~~~-~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~ 102 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKE-KCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGT 102 (1204)
T ss_dssp CHHHHHHHHHHHHHHHH-HCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHHh-CchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhc
Confidence 55567777777766533 3443233333332 24556777777776655421 1222 223333333221
Q ss_pred C---CCChHHHHHHHHHHHHHhhhC-CCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 008746 145 K---DNNSYVRTVAVIGVLKLYHIS-APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 145 ~---d~~~~VRk~A~lal~kl~~~~-p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~ 204 (555)
. +..++||.+.+.++..+.+.+ |+.- +++++.+..++ +. ++.....++.+|..+.+
T Consensus 103 ~~~~~~~~~vr~kla~~la~Ia~~d~p~~W--p~ll~~L~~~~-~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 103 LNILEEENHIKDALSRIVVEMIKREWPQHW--PDMLIELDTLS-KQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp CCTTSSCHHHHHHHHHHHHHHHHHHSTTTC--TTHHHHHHHHH-HT-CHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHhCcccc--hHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHH
Confidence 1 256999999999999998754 6544 67777777763 43 55556667777777754
No 86
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.88 E-value=0.00064 Score=65.03 Aligned_cols=185 Identities=18% Similarity=0.110 Sum_probs=121.0
Q ss_pred HcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCC
Q 008746 108 DCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDP 187 (555)
Q Consensus 108 DL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~ 187 (555)
-+.|+++.+|..|.+.++ ++ .+.+++.|+++.||..|+..+ .+ +.+..+ ++|+
T Consensus 58 ll~d~~~~VR~~AA~~l~----~~-------~l~~L~~D~~~~VR~~aA~~L------~~---------~~L~~l-l~D~ 110 (244)
T 1lrv_A 58 YLADPFWERRAIAVRYSP----VE-------ALTPLIRDSDEVVRRAVAYRL------PR---------EQLSAL-MFDE 110 (244)
T ss_dssp GTTCSSHHHHHHHHTTSC----GG-------GGGGGTTCSSHHHHHHHHTTS------CS---------GGGGGT-TTCS
T ss_pred HhcCCCHHHHHHHHHhCC----HH-------HHHHHccCcCHHHHHHHHHHC------CH---------HHHHHH-HcCC
Confidence 348999999999999653 22 366888999999999998642 11 345565 6999
Q ss_pred ChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 008746 188 DPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLE 267 (555)
Q Consensus 188 d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~ 267 (555)
|+.|+..+...+ .+. . +...+.+.+++.+..+.+-+ . + +.+.
T Consensus 111 d~~VR~~aA~~l------~~~----------------~---L~~L~~D~d~~VR~~aA~~l---~---~-------~~l~ 152 (244)
T 1lrv_A 111 DREVRITVADRL------PLE----------------Q---LEQMAADRDYLVRAYVVQRI---P---P-------GRLF 152 (244)
T ss_dssp CHHHHHHHHHHS------CTG----------------G---GGGGTTCSSHHHHHHHHHHS---C---G-------GGGG
T ss_pred CHHHHHHHHHhC------CHH----------------H---HHHHHcCCCHHHHHHHHHhc---C---H-------HHHH
Confidence 999999887743 110 0 11224588888888887732 1 1 1445
Q ss_pred HHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccceeeec
Q 008746 268 DRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQ 347 (555)
Q Consensus 268 ~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~~~ 347 (555)
.++++.++.|..+++.. +.. ..+..++.+.++++|..+...+ .+ +.+.. ..
T Consensus 153 ~l~~D~d~~VR~~aa~~---l~~--------------~ll~~ll~D~d~~VR~aaa~~l------~~----~~L~~--Ll 203 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKR---LPE--------------ESLGLMTQDPEPEVRRIVASRL------RG----DDLLE--LL 203 (244)
T ss_dssp GTTTCSCHHHHHHHHHH---SCG--------------GGGGGSTTCSSHHHHHHHHHHC------CG----GGGGG--GG
T ss_pred HHHcCCCHHHHHHHHHc---CCH--------------HHHHHHHcCCCHHHHHHHHHhC------CH----HHHHH--HH
Confidence 67778889999988875 211 1123457789999999988763 11 12221 24
Q ss_pred cCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 008746 348 YNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVG 398 (555)
Q Consensus 348 ~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~ 398 (555)
.|+++.||..+.+-+- ...|.. +.+.+..++..+...+|
T Consensus 204 ~D~d~~VR~~aa~~l~-----------~~~L~~-L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 204 HDPDWTVRLAAVEHAS-----------LEALRE-LDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GCSSHHHHHHHHHHSC-----------HHHHHH-CCCCCHHHHHHHHCCC-
T ss_pred cCCCHHHHHHHHHcCC-----------HHHHHH-ccCCCHHHHHHHHHHhC
Confidence 6788999998888642 233333 47778888887766554
No 87
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.78 E-value=0.43 Score=51.32 Aligned_cols=260 Identities=18% Similarity=0.189 Sum_probs=149.7
Q ss_pred CCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcC-CChHHHHHHHHHHHHHHhhccccch-----Hhhh---
Q 008746 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND-PDPQVVANCLSALQEIWSLEASTSE-----EASR--- 215 (555)
Q Consensus 145 ~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d-~d~~V~~~a~~~L~~i~~~~~~~~~-----~~~~--- 215 (555)
+..-..=||.|+.++..+.+.+|..+....+ +.+...|-+| .|..++..++..|..+...+..... +...
T Consensus 32 ~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l-~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~ 110 (651)
T 3grl_A 32 SSTLLDDRRNAVRALKSLSKKYRLEVGIQAM-EHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLG 110 (651)
T ss_dssp HCCSHHHHHHHHHHHHHTTTTTTTHHHHHTH-HHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHH
T ss_pred hccchhHHHHHHHHHHHHHHHhHHHhhhhhH-HHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHH
Confidence 3456788999999999999999988743333 4444444566 6888888888888766543321100 0000
Q ss_pred -HH-hhhc-cHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHH-------HHHHHHHHhccCchHHHHHHHHHH
Q 008746 216 -ER-EALI-SKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-------IMNLLEDRLQHANGAVVLSTIKVF 285 (555)
Q Consensus 216 -~~-~~ll-~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~-------i~~~l~~~L~s~~~aV~~eai~~i 285 (555)
.. ..++ .+..+.-|++.+...+.|.+...+++|..++...++.... -+..+..+|.+....|+-||+-++
T Consensus 111 ~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL 190 (651)
T 3grl_A 111 SQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL 190 (651)
T ss_dssp HHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH
Confidence 00 0111 2335677888888999999999999999887666553322 245667788888889999999999
Q ss_pred HHhcCCcchhHHHH-HHHHHHHHHHHhcCCCc----hhHHHHHHHHHHHHhhCCc---ccc-----cccceeeeccCC--
Q 008746 286 LHLTLSMTDVHQQV-YERIKAPLLTLVSSGSP----EQSYAVLSHLHILVMRAPF---IFA-----SDYKHFYCQYNE-- 350 (555)
Q Consensus 286 ~~l~~~~~~~~~~~-l~~i~~~L~~ll~~~~~----~~ry~aL~~l~~l~~~~p~---~~~-----~~~~~f~~~~~d-- 350 (555)
..+....++++..+ ++-....|..++.+... .+---.|..+.-+++.+|. .|. +.+..++-..++
T Consensus 191 ~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~ 270 (651)
T 3grl_A 191 QALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENS 270 (651)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSS
T ss_pred HHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcccc
Confidence 99988777654221 11122233334432211 2223344445555555531 222 122211111111
Q ss_pred ---cHHHH--HHHHHHHHHccCCCCHH-------------HHHHHHHHHhhcC--CHHHHHHHHHHHHHHhcccC
Q 008746 351 ---PSYVK--KLKLEMLTAVANESNTY-------------EIVTELCEYAANV--DIPIARESIRAVGKIALQQY 405 (555)
Q Consensus 351 ---d~~Ir--~~aL~iL~~l~~~~N~~-------------~Iv~eL~~y~~~~--d~~~~~~~i~~i~~la~~~~ 405 (555)
+..++ ...++++.-++.++|-. .++..|...+... ...++.+++.+++.+....+
T Consensus 271 ~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~ 345 (651)
T 3grl_A 271 GWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ 345 (651)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH
Confidence 11122 23677777787776531 1344455555443 56777788888877665443
No 88
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.77 E-value=0.05 Score=52.31 Aligned_cols=192 Identities=10% Similarity=-0.006 Sum_probs=120.6
Q ss_pred CCCCCCCCCcHHHHHHHHHhhhcC-----CCCCChHHHHHHHHHHHHHHhcCCCc----chh-HHHhhhhcCCCCchhHH
Q 008746 12 SPSQPSGKGEVSDLKSQLRQLAGS-----RAPGIDDSKRELFKKVISYMTIGIDV----SAV-FGEMVMCSATSDIVLKK 81 (555)
Q Consensus 12 ~~~~~~~~~e~~~~~~~l~~~~~~-----~~~~~~~~k~~~l~kli~~~~~G~d~----s~l-f~~vi~~~~s~~~~~Kr 81 (555)
-.++..+...+..++.++....+. -.+.+-+.+.+++..+.-......+- .++ |.-+.--+.++|+.+=.
T Consensus 26 w~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~ 105 (266)
T 2of3_A 26 WNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALI 105 (266)
T ss_dssp SCCSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 345566666666788877765211 00123456777777766655433211 111 22121112256776544
Q ss_pred HHHHHHHHhc----C----CCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHH
Q 008746 82 MCYLYVGNYA----K----VNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRT 153 (555)
Q Consensus 82 l~yl~l~~~~----~----~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk 153 (555)
-|.-++..++ + ..+..+-..+..+.--+.|+.+.+|..+-..+-.+..---...+.+.+..++.|+|+.+|-
T Consensus 106 ~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~ 185 (266)
T 2of3_A 106 KVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRS 185 (266)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHH
Confidence 4444444432 2 2222345566888899999999999877555433322111223566777899999999999
Q ss_pred HHHHHHHHHhhhCCCcccCCCch---HHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 008746 154 VAVIGVLKLYHISAPTCIDADFP---PTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (555)
Q Consensus 154 ~A~lal~kl~~~~p~~~~~~~~~---~~l~~lll~d~d~~V~~~a~~~L~~i~~~~ 206 (555)
.++..+..++..+.-.. ...+ +.+..+ ++|+|..|+.+|+.++.++...-
T Consensus 186 e~l~~l~~li~~~G~~~--~~~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 186 ECLLVIEYYITNAGISP--LKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHHHHHHHHHHCSGG--GGGGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCc--cccccchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999987665442 4467 888887 69999999999999999987653
No 89
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.71 E-value=0.035 Score=59.72 Aligned_cols=191 Identities=14% Similarity=0.067 Sum_probs=113.8
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc-----cCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccch
Q 008746 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC-----IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (555)
Q Consensus 137 ~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~-----~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~ 211 (555)
++.+..++...+.|||-.|+.++..+....|+.. ..|.-++.|..+ ++|+...++..|+.+|.++.+.++.+
T Consensus 124 i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l-L~d~rE~iRneallLL~~Lt~~n~~i-- 200 (651)
T 3grl_A 124 VTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL-LADSREVIRNDGVLLLQALTRSNGAI-- 200 (651)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG-GGCSSHHHHHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH-HhCchHHHHHHHHHHHHHHhcCCHHH--
Confidence 5666788899999999999999999988777722 246788899998 68888889999999999999887642
Q ss_pred HhhhHHhhhccHHHHHHHHhhcCCC----ChhHHHHHHHHHHccCCCChhHHHH-----HHHHHHHHhccCc--------
Q 008746 212 EASREREALISKPVIYYLLNRIKEF----SEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHAN-------- 274 (555)
Q Consensus 212 ~~~~~~~~ll~~~~~~~L~~~l~~~----~pw~q~~iL~~L~~~~~~~~~~~~~-----i~~~l~~~L~s~~-------- 274 (555)
.+...+- ..|.+|++.+..- +.-..-..|.++..+...++..-.- .+..+.+++....
T Consensus 201 ---QklVAFE--naFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Q 275 (651)
T 3grl_A 201 ---QKIVAFE--NAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQ 275 (651)
T ss_dssp ---HHHHHHT--THHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHH
T ss_pred ---HHHHHHh--ccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHH
Confidence 1111111 2566666654332 2233444555555554444322111 2334444554221
Q ss_pred ----hHHHHHHHHHHHHhcCCc-ch-hHHHHHH--HHHHHHHHHhcCC--CchhHHHHHHHHHHHHhhCCc
Q 008746 275 ----GAVVLSTIKVFLHLTLSM-TD-VHQQVYE--RIKAPLLTLVSSG--SPEQSYAVLSHLHILVMRAPF 335 (555)
Q Consensus 275 ----~aV~~eai~~i~~l~~~~-~~-~~~~~l~--~i~~~L~~ll~~~--~~~~ry~aL~~l~~l~~~~p~ 335 (555)
-.-+++.+++++.-+... .. -.+..+. .+...|.+++.++ ...++-.|+..+..+++.+|.
T Consensus 276 k~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~ 346 (651)
T 3grl_A 276 KVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV 346 (651)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH
Confidence 112456666654321110 01 1122221 2334566666543 456888999999998877654
No 90
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.66 E-value=0.039 Score=52.88 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=77.3
Q ss_pred HHHhHcCC-CChHHHHHHHHHhcC---CChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHH
Q 008746 104 FLQRDCKD-EDPMIRGLALRSLCS---LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (555)
Q Consensus 104 ~l~kDL~~-~n~~vr~lAL~~L~~---i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l 179 (555)
.+.+..+. ++ ..+...|+..-. -++|++.+.+++.+.....|++..|||..+--+...++.+++.. +..++.|
T Consensus 19 ~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~--~~~l~~L 95 (257)
T 3gs3_A 19 DWCNELVIASP-STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL--PHVINVV 95 (257)
T ss_dssp HHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHH
T ss_pred HHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 33343333 44 466666665544 36799999999999999999999999999999999999999887 7788888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHh
Q 008746 180 KHLMLNDPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 180 ~~lll~d~d~~V~~~a~~~L~~i~~ 204 (555)
..+ ++|.|+.|...++.+...+.+
T Consensus 96 ~~L-l~d~d~~V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 96 SML-LRDNSAQVIKRVIQACGSIYK 119 (257)
T ss_dssp HHH-TTCSCHHHHHHHHHHHHHHHH
T ss_pred HHH-HcCCCHHHHHHHHHHHHHHHH
Confidence 887 689999999999988877653
No 91
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.62 E-value=0.072 Score=50.97 Aligned_cols=156 Identities=13% Similarity=0.095 Sum_probs=91.4
Q ss_pred HHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHH----hhhhcCCCCchhHHHHHHHHHHhcCCCChHHH
Q 008746 24 DLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGE----MVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL 99 (555)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~----vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~ 99 (555)
.-+.+..++.|+-....++.|.+.|+++--+.+.+ |.+ ++++ ++.+...++.++||.+--|+......+++++.
T Consensus 12 ~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~ 89 (257)
T 3gs3_A 12 TARAKVVDWCNELVIASPSTKCELLAKVQETVLGS-CAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP 89 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred cHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443323223478999999988777776 333 4444 45666678899999999999887766666666
Q ss_pred HHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHhhhCCCcccCCCchHH
Q 008746 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPT 178 (555)
Q Consensus 100 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l-~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~ 178 (555)
-++.++..-++++++.+.-.|+.+.+++ +|.+.+.+ .+++ +-...-.+.-++ ..+...
T Consensus 90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~i---------Y~~~l~~i~~~~~--~~~~~~~~W~~m----------~~lK~~ 148 (257)
T 3gs3_A 90 HVINVVSMLLRDNSAQVIKRVIQACGSI---------YKNGLQYLCSLME--PGDSAEQAWNIL----------SLIKAQ 148 (257)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHH---------HHHHHHHHTTSSS--CCHHHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHH---------HHHHHHHHhcCCC--CcchHHHHHHHH----------HHHHHH
Confidence 6666666666666666666666666642 22222222 1111 100000011111 112344
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHH
Q 008746 179 LKHLMLNDPDPQVVANCLSALQEIW 203 (555)
Q Consensus 179 l~~lll~d~d~~V~~~a~~~L~~i~ 203 (555)
+..+ ....+.+|+.+|+..+..+.
T Consensus 149 Il~~-~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 149 ILDM-IDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHG-GGSSCHHHHHHHHHHHHHHH
T ss_pred HHHH-HccCCcchHHHHHHHHHHHH
Confidence 4555 46678999999999888764
No 92
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.25 E-value=1.4 Score=50.76 Aligned_cols=102 Identities=13% Similarity=-0.047 Sum_probs=72.3
Q ss_pred HHHHHHhHcCC--CChHHHHHHHHHhcCCCh-------hhhHHHHHHHHhhccC-----CCChHHHHHHHHHHHHHhh--
Q 008746 101 TINFLQRDCKD--EDPMIRGLALRSLCSLRV-------ANLVEYLVGPLGLGLK-----DNNSYVRTVAVIGVLKLYH-- 164 (555)
Q Consensus 101 ~in~l~kDL~~--~n~~vr~lAL~~L~~i~~-------~ei~~~l~~~i~~~l~-----d~~~~VRk~A~lal~kl~~-- 164 (555)
..+.+.+-+.+ .++..|..|+-++|.|.. ....+.+++.+..+.. |+.+.||.+++.++++..+
T Consensus 452 ~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl 531 (1023)
T 4hat_C 452 MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL 531 (1023)
T ss_dssp HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH
Confidence 34555555554 679999988888888632 2355677777777776 4677899999999998654
Q ss_pred -hCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 165 -ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 165 -~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
.+|+.+ +..+..+... +.|++|+|..+|+.++..+++.
T Consensus 532 ~~~~~~L--~~vl~~L~~~-l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 532 KAHWNFL--RTVILKLFEF-MHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHCHHHH--HHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHH
T ss_pred hccHHHH--HHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHH
Confidence 345543 3444555554 4788899999999999998764
No 93
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.23 E-value=0.044 Score=51.32 Aligned_cols=140 Identities=12% Similarity=0.054 Sum_probs=96.5
Q ss_pred CCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHh-HcCCCChHHHHHHHHHhcCCCh---hhhHH
Q 008746 59 IDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQR-DCKDEDPMIRGLALRSLCSLRV---ANLVE 134 (555)
Q Consensus 59 ~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~k-DL~~~n~~vr~lAL~~L~~i~~---~ei~~ 134 (555)
++....+.-.-.+.+++.+++|-++--.+... ...++ +...++. --.|++.-||-.+-.+++.+.. |+
T Consensus 67 ~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~~----~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 67 NDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDKE----ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSHH----HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred CCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcHH----HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 34444455445677888888988877766666 33333 2345554 4468899999888888877643 33
Q ss_pred HHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCC-chHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc
Q 008746 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDAD-FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (555)
Q Consensus 135 ~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~-~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~ 208 (555)
...+.+.+...|+++.||+.|..+...-.+ -|....+++ +.+.+..+ .+|++..|+.+.-..|.++++.+|+
T Consensus 139 ~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~-~~~~k~dp~~ll~iL~~L-~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 139 KALPIIDEWLKSSNLHTRRAATEGLRIWTN-RPYFKENPNEAIRRIADL-KEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp TTHHHHHHHHHCSSHHHHHHHHHHTCSGGG-STTTTTCHHHHHHHHHTT-TTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhHHHhc-cchhhcCHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHhhhCHH
Confidence 244566788999999999999998754222 233222222 45666665 7999999999999999999998874
No 94
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.21 E-value=1.2 Score=45.84 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=103.4
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhcc
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL 144 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l 144 (555)
|-.|+... ..+...|||+--++..|+..-|++.--++|++..-+.|.+..||..|++.|..++-.+.+.-+...+.++|
T Consensus 31 y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 31 YQVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLL 109 (507)
T ss_dssp HHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHH
Confidence 44555544 34689999999999999999999999999999999999999999999999999987788888999999999
Q ss_pred CCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 008746 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (555)
Q Consensus 145 ~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~ 204 (555)
...++-.+...=-++..+++.+|... +......+ .. +|..|+--++..|.+-..
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~t----l~~lf~~i-~~-~~e~~Rer~lkFi~~kl~ 163 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKGT----LGGLFSQI-LQ-GEDIVRERAIKFLSTKLK 163 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHH-HH-SCHHHHHHHHHHHHHHGG
T ss_pred hccchHHHHHHHHHHHHHHhcChHHH----HHHHHHHH-cc-cchHHHHHHHHHHHHHHh
Confidence 98887666555556666666676532 23333333 22 478889888888766543
No 95
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.20 E-value=0.047 Score=55.33 Aligned_cols=219 Identities=13% Similarity=0.134 Sum_probs=134.9
Q ss_pred HHHHHHHHhcCC---ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHH
Q 008746 116 IRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVV 192 (555)
Q Consensus 116 vr~lAL~~L~~i---~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~ 192 (555)
.+...|+.+-.+ .+|++.+.+++.+.....|++..|||..+--+...++.+++.+ +..++.|..+ ++|.|+.|.
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~--~~~l~~L~~L-L~d~d~~V~ 117 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL--LKLIANLNML-LRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHH-HTCSSHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HcCCCHHHH
Confidence 455555555553 5678888889999999999999999999999999999998887 7788888887 589999999
Q ss_pred HHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCC----ChhHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q 008746 193 ANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF----SEWAQCLVLELVAKYVPLDSNEIFDIMNLLED 268 (555)
Q Consensus 193 ~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~----~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~ 268 (555)
..++.+...+.+. .++.+++.=+.. .-|..+..+ -+.+..
T Consensus 118 K~~I~~~tslYpl-------------------~f~~i~~~~~~~~~~e~~W~~m~~l-----------------K~~Il~ 161 (386)
T 3o2t_A 118 KKAILTMTQLYKV-------------------ALQWMVKSRVISELQEACWDMVSAM-----------------AGDIIL 161 (386)
T ss_dssp HHHHHHHHHHHHH-------------------HHHHHHHC-CCCHHHHHHHHHHHHH-----------------HHHHHH
T ss_pred HHHHHHHHHHHHH-------------------HHHHHhcCCCcchhHHHHHHHHHHH-----------------HHHHHH
Confidence 9998888776431 445554421110 124443322 234455
Q ss_pred HhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCC---Cchh-HHHHHHHHHHHHhhCCccccccccee
Q 008746 269 RLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSG---SPEQ-SYAVLSHLHILVMRAPFIFASDYKHF 344 (555)
Q Consensus 269 ~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~---~~~~-ry~aL~~l~~l~~~~p~~~~~~~~~f 344 (555)
...+.|.+|...|++.+-.+- ++.+. ++.. + ..+.-|. +.
T Consensus 162 ~~ds~n~GVrl~aiKFle~VI--------------------l~qS~~~~d~~~p~------------~~~~d~S--L~-- 205 (386)
T 3o2t_A 162 LLDSDNDGIRTHAIKFVEGLI--------------------VTLSPRMADSEIPR------------RQEHDIS--LD-- 205 (386)
T ss_dssp GGGCSSHHHHHHHHHHHHHHH--------------------HHTSCCCTTCCCCG------------GGTTSCC--GG--
T ss_pred HhccCCcchHHHHHHHHHHHH--------------------HHhCCCCCCccccc------------ccCCCCC--Hh--
Confidence 677788888888877653210 01111 1100 0 0000000 00
Q ss_pred eeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHhcccCcH-HHHHHHHHHHh
Q 008746 345 YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV--DIPIARESIRAVGKIALQQYDV-NAIVDRLLQFL 418 (555)
Q Consensus 345 ~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~--d~~~~~~~i~~i~~la~~~~~~-~~~i~~ll~ll 418 (555)
.+..+ -+.++..+|+ + -...+++.|+.++.+. ++.....++..++.++.+-|.. ..++..+..+-
T Consensus 206 ~VP~n-Hp~L~~~~Le-------~-EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~~l~ 273 (386)
T 3o2t_A 206 RIPRD-HPYIQYNVLW-------E-EGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLH 273 (386)
T ss_dssp GSCTT-CSSSCHHHHH-------H-HHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHH
T ss_pred hCCCC-CCcCCHHHHH-------H-HHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhc
Confidence 11112 1234555554 1 1455777777777653 4545566888888888877774 45777776653
No 96
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.03 E-value=0.064 Score=62.24 Aligned_cols=123 Identities=13% Similarity=0.089 Sum_probs=86.6
Q ss_pred CCchhHHHHHHHHHHhcC--------CCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhc---
Q 008746 75 SDIVLKKMCYLYVGNYAK--------VNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLG--- 143 (555)
Q Consensus 75 ~~~~~Krl~yl~l~~~~~--------~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~--- 143 (555)
++..++..++|+++.+.. +.++..--..+.+.+.+...+..-+..+|++|||++.|+.++.+.+.+...
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~ 486 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKS 486 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSC
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHHHHhhcCcccc
Confidence 345577778888766432 233444456677777888888999999999999999999877666544321
Q ss_pred cCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHH-hcCCChHHHHHHHHHHHHH
Q 008746 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLM-LNDPDPQVVANCLSALQEI 202 (555)
Q Consensus 144 l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~ll-l~d~d~~V~~~a~~~L~~i 202 (555)
-.+....||..|+.|+.++-...|..+ .+.+.... ..+.++.||.+|+..|.+.
T Consensus 487 ~~~~~~rvr~aAi~ALr~~~~~~p~~v-----~~il~~i~~n~~e~~EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 487 LDEYSTRVQAEAIMALRNIAKRDPRKV-----QEIVLPIFLNVAIKSELRIRSCIVFFES 541 (1056)
T ss_dssp CCCSCHHHHHHHHHTTTTGGGTCHHHH-----HHHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHhhhhchHHH-----HHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 122345899999999998876655543 34555542 2568999999999988764
No 97
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=95.99 E-value=0.13 Score=48.47 Aligned_cols=148 Identities=10% Similarity=-0.039 Sum_probs=79.3
Q ss_pred HHHhhccCCCCh--HHHHHHHHHHHHHhhhCCC---cccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchH
Q 008746 138 GPLGLGLKDNNS--YVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (555)
Q Consensus 138 ~~i~~~l~d~~~--~VRk~A~lal~kl~~~~p~---~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~ 212 (555)
|.+.++|.++++ .|+..|+.++..+...+++ .+.+.+.++.|..+ +..+++.++..|+.+|..+...++.
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~l-L~s~~~~vq~~Aa~aL~nLa~~~~~---- 85 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQL-LKVQNEDVQRAVCGALRNLVFEDND---- 85 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHG-GGCCCHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCHH----
Confidence 445566666666 7777777777776644432 22234667777777 4667788888888888877654321
Q ss_pred hhhHHhhhccHHHHHHHHhhcC-CCChhHHHHHHHHHHccCCCChhHHHHHHH-HHHHHhc-------------------
Q 008746 213 ASREREALISKPVIYYLLNRIK-EFSEWAQCLVLELVAKYVPLDSNEIFDIMN-LLEDRLQ------------------- 271 (555)
Q Consensus 213 ~~~~~~~ll~~~~~~~L~~~l~-~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~-~l~~~L~------------------- 271 (555)
. +..+.....+..|++.+. ..++-.|-.....|..+...+ +....+.+ .+.++.+
T Consensus 86 n---k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 86 N---KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITEALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp H---HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred H---HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhccHHHHHHHHhccccCCcccccccccc
Confidence 0 111111123455555554 345556666555555543222 11222221 2222211
Q ss_pred cCchHHHHHHHHHHHHhcCCcch
Q 008746 272 HANGAVVLSTIKVFLHLTLSMTD 294 (555)
Q Consensus 272 s~~~aV~~eai~~i~~l~~~~~~ 294 (555)
+.++.|...|+.++..+....++
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~ 184 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGAD 184 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHH
T ss_pred cchHHHHHHHHHHHHHHhcCCHH
Confidence 12457888888888877654333
No 98
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.91 E-value=0.97 Score=51.91 Aligned_cols=122 Identities=11% Similarity=0.096 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCCCChHHHH----HH-HHHHhHcC---CCChHHHHHHHHHhcCCChh------------hhHHHHHHH
Q 008746 80 KKMCYLYVGNYAKVNPDLALL----TI-NFLQRDCK---DEDPMIRGLALRSLCSLRVA------------NLVEYLVGP 139 (555)
Q Consensus 80 Krl~yl~l~~~~~~~~e~~~l----~i-n~l~kDL~---~~n~~vr~lAL~~L~~i~~~------------ei~~~l~~~ 139 (555)
|+++ .....+.-..|+..+- .+ +.+.+-+. +.++..+..||.+|+.++.. +..+.+++.
T Consensus 416 k~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~l 494 (980)
T 3ibv_A 416 KKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQI 494 (980)
T ss_dssp HHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHH
T ss_pred HHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHH
Confidence 4445 5555555556776555 33 33444442 45789999999997776331 122345555
Q ss_pred HhhccC-----CCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhc-----CCChHHHHHHHHHHHHHHhh
Q 008746 140 LGLGLK-----DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLN-----DPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 140 i~~~l~-----d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~-----d~d~~V~~~a~~~L~~i~~~ 205 (555)
+.+++. +++|.||..+..+++|....-.. .+++++.+...+++ ++++.|+.+|..+|..+++.
T Consensus 495 l~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~---~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 495 LALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY---ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp HHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT---CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence 555544 89999999999999998775433 24555555555444 67889999999999998764
No 99
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=95.81 E-value=0.052 Score=51.31 Aligned_cols=107 Identities=12% Similarity=-0.016 Sum_probs=77.9
Q ss_pred HHHHHHHhHcCCCCh--HHHHHHHHHhcCCCh--hh----hHH-HHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCC--
Q 008746 100 LTINFLQRDCKDEDP--MIRGLALRSLCSLRV--AN----LVE-YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP-- 168 (555)
Q Consensus 100 l~in~l~kDL~~~n~--~vr~lAL~~L~~i~~--~e----i~~-~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~-- 168 (555)
+.+..+.+.|.++++ .++..|..++.++.. ++ +++ ..+|.+.++|.++++.||..|+.|+..+...+++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 445677778888877 777777777776632 21 222 3578888999999999999999999998754433
Q ss_pred -cccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 008746 169 -TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (555)
Q Consensus 169 -~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~ 206 (555)
.+.+.+.++.|..+|...+++.++..|..+|..++..+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~ 126 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence 23346788888888423578999999999999887543
No 100
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.78 E-value=0.071 Score=51.27 Aligned_cols=186 Identities=14% Similarity=0.063 Sum_probs=112.9
Q ss_pred HhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHH---HhcCCChHHHHHHHHHHHHHHhh----ccccchH
Q 008746 140 LGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL---MLNDPDPQVVANCLSALQEIWSL----EASTSEE 212 (555)
Q Consensus 140 i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~l---ll~d~d~~V~~~a~~~L~~i~~~----~~~~~~~ 212 (555)
+...+-+++.--|-+|+-.+.+....+|+.+ -...+.+.++ -+.|+|+.|...++.+|..+... ++....
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~--~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~- 127 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSL--LSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ- 127 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHH--HHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH-
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH-
Confidence 3455566777777777777777776666543 2223333332 14699999999999988887432 111000
Q ss_pred hhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCc
Q 008746 213 ASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM 292 (555)
Q Consensus 213 ~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~ 292 (555)
+-. ...++.|+..+++..+-.+-.+-++++.+..- --...+.+.+..-++|.|+-++-||+..+..+-...
T Consensus 128 ------~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v--~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 128 ------EEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV--VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp ------HHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH--HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred ------HHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 000 12567788888888766665555554443210 012346666767788999888888888776543211
Q ss_pred chhHHHHHHHHH---HHHHHHhcCCCchhHHHHHHHHHHHHhhCCccccccc
Q 008746 293 TDVHQQVYERIK---APLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (555)
Q Consensus 293 ~~~~~~~l~~i~---~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~ 341 (555)
..-. .+.. +.+..+++++|+++|-.|+..+..+....++-+-.++
T Consensus 199 G~~~----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 199 GISP----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp CSGG----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCCc----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 1000 1122 4566788999999999999999988766555443333
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.58 E-value=0.16 Score=47.59 Aligned_cols=123 Identities=10% Similarity=0.014 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCcchhHHHhhh-hcCCCCchhHHHHHHHHHHhcC-CCChHHHHHHHHHHhHcCCCChHHHH
Q 008746 41 DDSKRELFKKVISYMTIGIDVSAVFGEMVM-CSATSDIVLKKMCYLYVGNYAK-VNPDLALLTINFLQRDCKDEDPMIRG 118 (555)
Q Consensus 41 ~~~k~~~l~kli~~~~~G~d~s~lf~~vi~-~~~s~~~~~Krl~yl~l~~~~~-~~~e~~~l~in~l~kDL~~~n~~vr~ 118 (555)
++-|.-+.. ++... ......++.+.. +...++..++-++-.++..+.. .+||. +...+.+=++|+|+.+|-
T Consensus 85 deVR~~Av~-lLg~~---~~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---~l~~~~~W~~d~n~~VRR 157 (240)
T 3l9t_A 85 YQVRMYAVF-LFGYL---SKDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---ALPIIDEWLKSSNLHTRR 157 (240)
T ss_dssp HHHHHHHHH-HHHHT---TTSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---THHHHHHHHHCSSHHHHH
T ss_pred hHHHHHHHH-HHHhc---cCcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---HHHHHHHHhcCCCHHHHH
Confidence 455555553 33322 133444555544 4445667677776666666664 66774 335677888999999999
Q ss_pred HHHHHhcC---C-ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc
Q 008746 119 LALRSLCS---L-RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (555)
Q Consensus 119 lAL~~L~~---i-~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~ 170 (555)
+|+..+-- . ....-.+.+.+.+.++..|++.||||..+-+|--+.+.+|+.+
T Consensus 158 ~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 158 AATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp HHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 99988622 2 1122334578888899999999999999999999999988765
No 102
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.26 E-value=5.4 Score=46.84 Aligned_cols=92 Identities=12% Similarity=0.012 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHhcCCCh-hhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCccc---CCCchHHHHHHHhcC--
Q 008746 113 DPMIRGLALRSLCSLRV-ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI---DADFPPTLKHLMLND-- 186 (555)
Q Consensus 113 n~~vr~lAL~~L~~i~~-~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~---~~~~~~~l~~lll~d-- 186 (555)
++..|..|-..|-.+.. |+....+...+. -.+.++.||..|+..+-+..+.+=..+. ...+.+.+...+.+.
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~ 103 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTL 103 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSC
T ss_pred ChHHHHHHHHHHHHHHhCchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhcc
Confidence 67789999888877644 344443433332 2566899999999998887654211110 022333444443322
Q ss_pred ----CChHHHHHHHHHHHHHHhhc
Q 008746 187 ----PDPQVVANCLSALQEIWSLE 206 (555)
Q Consensus 187 ----~d~~V~~~a~~~L~~i~~~~ 206 (555)
..+.|+..+..++..|.+.+
T Consensus 104 ~~~~~~~~vr~kla~~la~Ia~~d 127 (1204)
T 3a6p_A 104 NILEEENHIKDALSRIVVEMIKRE 127 (1204)
T ss_dssp CTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHh
Confidence 46888888888899988765
No 103
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.02 E-value=0.12 Score=53.30 Aligned_cols=122 Identities=13% Similarity=0.110 Sum_probs=94.7
Q ss_pred CCCChHHHHHHHHHhcCC--ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCC
Q 008746 110 KDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDP 187 (555)
Q Consensus 110 ~~~n~~vr~lAL~~L~~i--~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~ 187 (555)
...++....+|-..+++. .-|++.+..+.....+..|.++-||+.|+-++..+++. +.+ +...+.|..+ +...
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i--~kiaDvL~Ql-Lqtd 112 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENL--PRVADILTQL-LQTD 112 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCH--HHHHHHHHHH-TTCC
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhh--hhHHHHHHHH-Hhcc
Confidence 344688888888888886 45889888888999999999999999999999998874 444 6677888887 5777
Q ss_pred ChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHcc
Q 008746 188 DPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (555)
Q Consensus 188 d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~ 251 (555)
|+..+...-.+|.++.+.+|. ..+..++..+...++-.+.++|++|+..
T Consensus 113 d~~E~~~V~~sL~sllk~Dpk---------------~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 113 DSAEFNLVNNALLSIFKMDAK---------------GTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp CHHHHHHHHHHHHHHHHHCHH---------------HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcChH---------------HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 888888888888888887663 1344445544456788899999988664
No 104
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.89 E-value=0.85 Score=46.10 Aligned_cols=139 Identities=15% Similarity=0.183 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhcCCCc---chhHHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHH
Q 008746 42 DSKRELFKKVISYMTIGIDV---SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRG 118 (555)
Q Consensus 42 ~~k~~~l~kli~~~~~G~d~---s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~ 118 (555)
+.|.+.|+++=-+... .|. +.+|.+++.+...++.++||.+--|+......+.|.+.-++.+|..-|++.++.+.-
T Consensus 40 ~~Kl~~L~q~~EL~l~-~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K 118 (386)
T 3o2t_A 40 DSKITVLKQVQELIIN-KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVK 118 (386)
T ss_dssp THHHHHHHHHHHHHHT-TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4799999886665543 333 346778888888899999999999998776655565555555555555555666665
Q ss_pred HHHHHhcCCChhhhHHHHHHHHhhccCCCCh-HHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHH
Q 008746 119 LALRSLCSLRVANLVEYLVGPLGLGLKDNNS-YVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLS 197 (555)
Q Consensus 119 lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~-~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~ 197 (555)
.|+.+.+++ .+.+...+.+ +++. ..-..+ ...+ ..+...+..+ ....+.+|+.+++.
T Consensus 119 ~~I~~~tsl-----Ypl~f~~i~~---~~~~~~~~e~~-W~~m------------~~lK~~Il~~-~ds~n~GVrl~aiK 176 (386)
T 3o2t_A 119 KAILTMTQL-----YKVALQWMVK---SRVISELQEAC-WDMV------------SAMAGDIILL-LDSDNDGIRTHAIK 176 (386)
T ss_dssp HHHHHHHHH-----HHHHHHHHHH---C-CCCHHHHHH-HHHH------------HHHHHHHHHG-GGCSSHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhc---CCCcchhHHHH-HHHH------------HHHHHHHHHH-hccCCcchHHHHHH
Confidence 555555542 1111111111 1110 000000 0000 1123344454 46678999999999
Q ss_pred HHHHHH
Q 008746 198 ALQEIW 203 (555)
Q Consensus 198 ~L~~i~ 203 (555)
.+..+.
T Consensus 177 Fle~VI 182 (386)
T 3o2t_A 177 FVEGLI 182 (386)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 105
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.47 E-value=2.1 Score=48.74 Aligned_cols=294 Identities=13% Similarity=0.130 Sum_probs=177.9
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhc---CCCcchhHHHh-hhhcCCCCchhHH-HHHHHHHHhcCCC-
Q 008746 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTI---GIDVSAVFGEM-VMCSATSDIVLKK-MCYLYVGNYAKVN- 94 (555)
Q Consensus 21 e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~---G~d~s~lf~~v-i~~~~s~~~~~Kr-l~yl~l~~~~~~~- 94 (555)
.++.+...++.+..|. .+.++.+...+-..... ..++.+.+.+. .+.+..++..+.- ++|-.+.......
T Consensus 12 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~ 87 (986)
T 2iw3_A 12 SIKVLEELFQKLSVAT----ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQSNLSP 87 (986)
T ss_dssp HHHHHHHHHHHHTTCC----TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCT
T ss_pred hHHHHHHHHhhccccc----hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Confidence 3444544444433332 23455555555444431 13444444444 4555554333221 2222232222221
Q ss_pred ChHHHH--HHHHHHhHcCCCChHHHHHHH---HHhcCCChhhhHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHhhhCCC
Q 008746 95 PDLALL--TINFLQRDCKDEDPMIRGLAL---RSLCSLRVANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAP 168 (555)
Q Consensus 95 ~e~~~l--~in~l~kDL~~~n~~vr~lAL---~~L~~i~~~ei~~~l~~~i~~~l~d~-~~~VRk~A~lal~kl~~~~p~ 168 (555)
+-...+ ..+.+...+.|.+..||..|- .++.+...|+-...+.|.+...+.+. ..-.+-.|+-++.++....|+
T Consensus 88 ~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~ 167 (986)
T 2iw3_A 88 SVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD 167 (986)
T ss_dssp TTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred CcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence 211222 368888888999999998765 44455567777788999999998665 467778888888888877776
Q ss_pred ccc--CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHH
Q 008746 169 TCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLE 246 (555)
Q Consensus 169 ~~~--~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~ 246 (555)
.+. -++++|.+...+ -|.-+.|..+|..++..++.--. ..+ +. +.+..|++.+.++++ .-..++
T Consensus 168 ~~~~~~~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~~~~~---------n~d-~~-~~~~~~~~~~~~p~~--~~~~~~ 233 (986)
T 2iw3_A 168 QVALRMPELIPVLSETM-WDTKKEVKAAATAAMTKATETVD---------NKD-IE-RFIPSLIQCIADPTE--VPETVH 233 (986)
T ss_dssp HHHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHGGGCC---------CTT-TG-GGHHHHHHHHHCTTH--HHHHHH
T ss_pred HHHHhccchhcchHhhc-ccCcHHHHHHHHHHHHHHHhcCC---------Ccc-hh-hhHHHHHHHhcChhh--hHHHHH
Confidence 542 267889999985 89999999999999998875211 111 11 256778887777765 455566
Q ss_pred HHHccC---CCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCc--chhHHHHHHHHHHHHHHHh-cCCCchhHH
Q 008746 247 LVAKYV---PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM--TDVHQQVYERIKAPLLTLV-SSGSPEQSY 320 (555)
Q Consensus 247 ~L~~~~---~~~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~--~~~~~~~l~~i~~~L~~ll-~~~~~~~ry 320 (555)
.|..-. --+.....-+.+.|..-|+....++-..++-.+-.+..-- +.....++.++.+-+.+.. .-++|+.|-
T Consensus 234 ~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~ 313 (986)
T 2iw3_A 234 LLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEARE 313 (986)
T ss_dssp HHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHH
T ss_pred HhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHH
Confidence 665532 1233334455666667777778888777776665555422 2122334455555554433 248999999
Q ss_pred HHHHHHHHHHhh
Q 008746 321 AVLSHLHILVMR 332 (555)
Q Consensus 321 ~aL~~l~~l~~~ 332 (555)
++-+++..+...
T Consensus 314 ~~~~a~~~l~~~ 325 (986)
T 2iw3_A 314 VTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 998888877554
No 106
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.14 E-value=0.11 Score=49.34 Aligned_cols=91 Identities=21% Similarity=0.123 Sum_probs=62.3
Q ss_pred hhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCC
Q 008746 68 MVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDN 147 (555)
Q Consensus 68 vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~ 147 (555)
+..++..++..+|+.+=-. + .+ ..+.+-++|+++.||..|...+. + ..+..+++|+
T Consensus 79 l~~L~~D~~~~VR~~aA~~---L---~~-------~~L~~ll~D~d~~VR~~aA~~l~----~-------~~L~~L~~D~ 134 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYR---L---PR-------EQLSALMFDEDREVRITVADRLP----L-------EQLEQMAADR 134 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTT---S---CS-------GGGGGTTTCSCHHHHHHHHHHSC----T-------GGGGGGTTCS
T ss_pred HHHHccCcCHHHHHHHHHH---C---CH-------HHHHHHHcCCCHHHHHHHHHhCC----H-------HHHHHHHcCC
Confidence 4567788888888776532 1 12 34666678999999998888652 1 2356778899
Q ss_pred ChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHH
Q 008746 148 NSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSA 198 (555)
Q Consensus 148 ~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~ 198 (555)
++.||..++..+ .+ +.+..+ .+|+|+.|+.+++..
T Consensus 135 d~~VR~~aA~~l------~~---------~~l~~l-~~D~d~~VR~~aa~~ 169 (244)
T 1lrv_A 135 DYLVRAYVVQRI------PP---------GRLFRF-MRDEDRQVRKLVAKR 169 (244)
T ss_dssp SHHHHHHHHHHS------CG---------GGGGGT-TTCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHhc------CH---------HHHHHH-HcCCCHHHHHHHHHc
Confidence 999999887631 11 223344 688888888888764
No 107
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.62 E-value=0.55 Score=49.38 Aligned_cols=57 Identities=9% Similarity=-0.017 Sum_probs=38.8
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 008746 261 DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHL 326 (555)
Q Consensus 261 ~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l 326 (555)
.+++.+-++++|+-++|+.++.+++..+.. .. ++. -....++-+.+.+++-.+++.-
T Consensus 375 ~LVPRL~PFLRHtITSVR~AVL~TL~tfL~--~~----~LR---LIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 375 ERLKDIFPCFTSPVPEVRTSILNMVKNLSE--ES----IDF---LVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGGGGTGGGGTCSSHHHHHHHHHHTTTCCC--HH----HHH---HHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHHh--hh----HHH---HHHHHHHhCCcHHHHHHHHHHH
Confidence 466778899999999999999999876651 11 111 1122334457788888777765
No 108
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=93.50 E-value=14 Score=42.64 Aligned_cols=138 Identities=9% Similarity=0.040 Sum_probs=71.3
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhHHHhhhhcCCCCchhHHHHHHHHHHhcCC----
Q 008746 18 GKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKV---- 93 (555)
Q Consensus 18 ~~~e~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~~~~s~~~~~Krl~yl~l~~~~~~---- 93 (555)
....+.++...++...+ ++...|+.+-+.|-..... -+.-....+++ -.+.+..+|..|-..+......
T Consensus 11 ~~~~~~~l~~~l~~~~~----p~~~~r~~Ae~~L~~~~~~-p~~~~~l~~iL--~~s~~~~vr~~aa~~Lk~~i~~~W~~ 83 (1049)
T 3m1i_C 11 NDLDIALLDQVVSTFYQ----GSGVQQKQAQEILTKFQDN-PDAWQKADQIL--QFSTNPQSKFIALSILDKLITRKWKL 83 (1049)
T ss_dssp SCCCHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHS-TTGGGGHHHHH--HHCSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred CcccHHHHHHHHHHHhC----CChHHHHHHHHHHHHHHhC-chHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHhhCcc
Confidence 45667888888877554 2334566666555433222 22211222222 2356788999999888775432
Q ss_pred -CChHHHH----HHHHHHhHcCCC-----ChHHHHHHHHHhcCC---ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHH
Q 008746 94 -NPDLALL----TINFLQRDCKDE-----DPMIRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVL 160 (555)
Q Consensus 94 -~~e~~~l----~in~l~kDL~~~-----n~~vr~lAL~~L~~i---~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~ 160 (555)
.++..-- +.+.+.+.-.++ ++.+|.....+++.+ ..|+-.+.+++.+..+++ .++..+..+...+.
T Consensus 84 l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~ 162 (1049)
T 3m1i_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLK 162 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHH
Confidence 2332222 223333322222 467776555555554 223333445555556665 45555555555555
Q ss_pred HHh
Q 008746 161 KLY 163 (555)
Q Consensus 161 kl~ 163 (555)
.+.
T Consensus 163 ~l~ 165 (1049)
T 3m1i_C 163 LLS 165 (1049)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 109
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=93.24 E-value=15 Score=42.28 Aligned_cols=117 Identities=18% Similarity=0.204 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC--------Ch---hhhHHHHHHHHhhccCC
Q 008746 78 VLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--------RV---ANLVEYLVGPLGLGLKD 146 (555)
Q Consensus 78 ~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i--------~~---~ei~~~l~~~i~~~l~d 146 (555)
..|+-+.-++..+-+ +|+....+..-+. .+.++.+|-.|+.+|-+. .. ..+-+.++..+.+...+
T Consensus 31 ~~r~~A~~~L~~~q~-sp~aw~~~~~iL~---~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~ 106 (1023)
T 4hat_C 31 VQQKQAQEILTKFQD-NPDAWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQD 106 (1023)
T ss_dssp HHHHHHHHHHHHHHH-CTTGGGGHHHHHH---HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHc-CccHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 466666666665533 3554222222222 244667777666666542 11 11233344444443333
Q ss_pred C-----ChHHHHHHHHHHHHHhhh-CCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHH
Q 008746 147 N-----NSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (555)
Q Consensus 147 ~-----~~~VRk~A~lal~kl~~~-~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i 202 (555)
+ .++||.+.+.++..+++. +|+.- +++++.+..+ ++. ++...-.++..|..+
T Consensus 107 ~~~i~~~~~i~nKLa~~la~I~~~~~p~~W--p~~l~dL~~~-l~~-~~~~~~~~L~iL~~L 164 (1023)
T 4hat_C 107 DEVFKTQKNLINKSDLTLVQILKQEWPQNW--PEFIPELIGS-SSS-SVNVCENNMIVLKLL 164 (1023)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHTTTTC--TTHHHHHHHH-TTT-CHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHhChhhc--hHHHHHHHHH-hcC-CHHHHHHHHHHHHHH
Confidence 2 589999999999999865 46654 6777777776 343 444444445555444
No 110
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=93.04 E-value=16 Score=42.13 Aligned_cols=131 Identities=12% Similarity=0.106 Sum_probs=70.7
Q ss_pred HHHhhhhcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCCh-------h----hhH
Q 008746 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRV-------A----NLV 133 (555)
Q Consensus 65 f~~vi~~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-------~----ei~ 133 (555)
+-.++..+-+++...|+-+.-++..+ +.+|+.-..+..-+. .+.++.+|-.|+.+|-+.-. + .+-
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~-q~sp~aw~~~~~iL~---~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR 105 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHL-KEHPDAWTRVDTILE---FSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIK 105 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTS-SCCSCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH-HcCchHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHH
Confidence 33445544445556666676666554 335554222222221 24567777777666655311 1 133
Q ss_pred HHHHHHHhhccCC-----CChHHHHHHHHHHHHHhhh-CCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 008746 134 EYLVGPLGLGLKD-----NNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (555)
Q Consensus 134 ~~l~~~i~~~l~d-----~~~~VRk~A~lal~kl~~~-~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~ 203 (555)
+.++..+.+...+ .++.++.+.+.++..+++. +|+.- +++++.+..++ +. ++...-.++..|..+.
T Consensus 106 ~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W--p~fi~dLv~~~-~~-~~~~~~~~L~IL~~L~ 177 (1073)
T 3gjx_A 106 KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW--PTFISDIVGAS-RT-SESLCQNNMVILKLLS 177 (1073)
T ss_dssp HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC--TTHHHHHHHHH-HH-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc--cHHHHHHHHHh-CC-CHHHHHHHHHHHHHHH
Confidence 3444444443333 3577888889999998865 67654 66777777663 32 3444444555555543
No 111
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.12 E-value=13 Score=43.00 Aligned_cols=143 Identities=13% Similarity=0.073 Sum_probs=85.9
Q ss_pred ChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhC----CCccc--CCCchHHHHHHHhcCCChHHHHHHHHHHHH
Q 008746 128 RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS----APTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQE 201 (555)
Q Consensus 128 ~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~----p~~~~--~~~~~~~l~~lll~d~d~~V~~~a~~~L~~ 201 (555)
.++++++.+...+..--..++|.+|+.|++|++.+.+++ +.+-. .+.+.+.+.+. ++..|...+..++.+|..
T Consensus 388 Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~-~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 388 ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQS-SDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHH-HHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH-HhcCChHHHHHHHHHhhc
Confidence 455666665544433323468999999999998876532 22110 12344455555 356677788888888888
Q ss_pred HHhhccccchHhhhHHhhhccHHHHHHHHhhcCC-----C--ChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhc--c
Q 008746 202 IWSLEASTSEEASREREALISKPVIYYLLNRIKE-----F--SEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQ--H 272 (555)
Q Consensus 202 i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~-----~--~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~--s 272 (555)
+... ..+..|.+.+.. . ..-.+..++..|+++....|+ .+.+.+.++.. .
T Consensus 467 ~g~p------------------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~---~v~~il~~i~~n~~ 525 (1056)
T 1lsh_A 467 AGQP------------------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR---KVQEIVLPIFLNVA 525 (1056)
T ss_dssp HTCG------------------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH---HHHHHHHHHHHCTT
T ss_pred cCCh------------------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH---HHHHHHHHHhcCCC
Confidence 7532 123333333322 1 234667789999998765553 34445555553 3
Q ss_pred CchHHHHHHHHHHHHhcCCc
Q 008746 273 ANGAVVLSTIKVFLHLTLSM 292 (555)
Q Consensus 273 ~~~aV~~eai~~i~~l~~~~ 292 (555)
.++-|+..|.-.++...|+.
T Consensus 526 e~~EvRiaA~~~Lm~t~P~~ 545 (1056)
T 1lsh_A 526 IKSELRIRSCIVFFESKPSV 545 (1056)
T ss_dssp SCHHHHHHHHHHHHHTCCCH
T ss_pred CChHHHHHHHHHHHHHCcCH
Confidence 45678888888887766543
No 112
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.10 E-value=8.8 Score=43.65 Aligned_cols=277 Identities=13% Similarity=0.123 Sum_probs=160.3
Q ss_pred chhHHHHHHHHHHhcCC--CChHHHHHHHHHHhHcCCCChH-HHHHHHHHhcCCC--hhhh---HHHHHHHHhhccCCCC
Q 008746 77 IVLKKMCYLYVGNYAKV--NPDLALLTINFLQRDCKDEDPM-IRGLALRSLCSLR--VANL---VEYLVGPLGLGLKDNN 148 (555)
Q Consensus 77 ~~~Krl~yl~l~~~~~~--~~e~~~l~in~l~kDL~~~n~~-vr~lAL~~L~~i~--~~ei---~~~l~~~i~~~l~d~~ 148 (555)
.+.|..++-....+... ...+..=+...+.+.+.+.+.- --+.++..|+... .+.. .-.+.|.+..+..|+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~ 108 (986)
T 2iw3_A 29 DNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD 108 (986)
T ss_dssp TTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence 33455555544444322 1122224567888888886433 3345566666432 1122 1224688888899999
Q ss_pred hHHHHHHHHHHHHHhhhC-CCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHH
Q 008746 149 SYVRTVAVIGVLKLYHIS-APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIY 227 (555)
Q Consensus 149 ~~VRk~A~lal~kl~~~~-p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~ 227 (555)
+.||++|-.|+..+++.. |+.+ ..+++.|...|..........+|+.++..+....|. ....--+.+++
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~--------~~~~~~~~~~p 178 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD--------QVALRMPELIP 178 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH--------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH--------HHHHhccchhc
Confidence 999999888888888644 4454 567777777753445688999999999999875442 11111123455
Q ss_pred HHHhhcCCCChhHHHHHHHHHHccCCC-ChhHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Q 008746 228 YLLNRIKEFSEWAQCLVLELVAKYVPL-DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAP 306 (555)
Q Consensus 228 ~L~~~l~~~~pw~q~~iL~~L~~~~~~-~~~~~~~i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~ 306 (555)
-+...+-+.-+-......+.+..++.. +..+...+++.+...+.+.+. +-||+..+..-+- -..+....+.-+.+.
T Consensus 179 ~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tf-v~~v~~~~l~~~~p~ 255 (986)
T 2iw3_A 179 VLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE--VPETVHLLGATTF-VAEVTPATLSIMVPL 255 (986)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH--HHHHHHHHTTCCC-CSCCCHHHHHHHHHH
T ss_pred chHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh--hHHHHHHhhcCee-EeeecchhHHHHHHH
Confidence 556666777777777666666665421 224556677777777776643 6777776653221 112222344445666
Q ss_pred HHHHhcCCCchhHHH---HHHHHHHHHhhCCccccccccee-------eeccCCc--HHHHHHHHHHHHHccC
Q 008746 307 LLTLVSSGSPEQSYA---VLSHLHILVMRAPFIFASDYKHF-------YCQYNEP--SYVKKLKLEMLTAVAN 367 (555)
Q Consensus 307 L~~ll~~~~~~~ry~---aL~~l~~l~~~~p~~~~~~~~~f-------~~~~~dd--~~Ir~~aL~iL~~l~~ 367 (555)
|.+=|+.+...++-- +.+.+.+++ .+|....+++..+ .-.-.+| ..+..+|++.|.+..+
T Consensus 256 l~r~l~~~~~~~~r~~~~~~~n~~~lv-~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 256 LSRGLNERETGIKRKSAVIIDNMCKLV-EDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHHTTC-CCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhccCcchhheeeEEEEcchhhhc-CCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 667677776766633 344444443 2343333333211 1122444 4566778888877644
No 113
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=86.90 E-value=1.6 Score=40.60 Aligned_cols=128 Identities=8% Similarity=-0.119 Sum_probs=79.4
Q ss_pred hhhcCCCCchhHHHHHHHHHHhcCC-CChHHHHHHHHHHhHcCCCChHHHH-HHHHHhcCCC--hhhhHHHHHHHHhhcc
Q 008746 69 VMCSATSDIVLKKMCYLYVGNYAKV-NPDLALLTINFLQRDCKDEDPMIRG-LALRSLCSLR--VANLVEYLVGPLGLGL 144 (555)
Q Consensus 69 i~~~~s~~~~~Krl~yl~l~~~~~~-~~e~~~l~in~l~kDL~~~n~~vr~-lAL~~L~~i~--~~ei~~~l~~~i~~~l 144 (555)
-.+..++-++.+-++.+.+...... .++- +-.+..+... -+|..+.- +| ++++.+- .|+ .+.+.+.+..
T Consensus 61 ~~L~~s~~~E~r~la~~~l~~~~~~~~~~~-l~~~~~~l~~--~~nWd~~D~~a-~~~~~~~~~~~~---~~~~~i~~W~ 133 (220)
T 2b6c_A 61 EAYYQKTEREYQYVAIDLALQNVQRFSLEE-VVAFKAYVPQ--KAWWDSVDAWR-KFFGSWVALHLT---ELPTIFALFY 133 (220)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHTGGGCCHHH-HHHGGGGTTT--TCSHHHHHHHH-HHHHHHHHHSGG---GHHHHHHHHT
T ss_pred HHHHcCchhHHHHHHHHHHHHHHhhCCHHH-HHHHHHHhcc--CCcHHHHHHHH-HHHHHHHHHChH---HHHHHHHHHH
Confidence 3567777888888888877765433 3332 2222222222 44655553 44 5555541 233 1345567889
Q ss_pred CCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc
Q 008746 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (555)
Q Consensus 145 ~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~ 208 (555)
.|++.++||.|+.+.+.. ....+ . ....+.+..+ .+|++..|..+.--+|.++++.+|+
T Consensus 134 ~s~~~w~rR~ai~~~l~~-~~~~~-~--~~~~~i~~~~-~~d~~~yV~kavgW~Lr~~~k~~~~ 192 (220)
T 2b6c_A 134 GAENFWNRRVALNLQLML-KEKTN-Q--DLLKKAIIYD-RTTEEFFIQKAIGWSLRQYSKTNPQ 192 (220)
T ss_dssp TCSSHHHHHHHHHTTTTC-GGGCC-H--HHHHHHHHHT-TTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred cCCCHHHHHHHHHHHHHH-HHCCC-H--HHHHHHHHHh-CCChHHHHHHHHHHHHHHHHhhCHH
Confidence 999999999999977533 21111 1 2233444444 6899999999999999999998774
No 114
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=86.86 E-value=3 Score=39.01 Aligned_cols=152 Identities=9% Similarity=0.028 Sum_probs=86.8
Q ss_pred hhcCCCCchhHHHHHHHHHHhcC-CCChHHHHHHHHHHhHcCCCChHHH-HHHHHHhcCC--ChhhhHHHHHHHHhhccC
Q 008746 70 MCSATSDIVLKKMCYLYVGNYAK-VNPDLALLTINFLQRDCKDEDPMIR-GLALRSLCSL--RVANLVEYLVGPLGLGLK 145 (555)
Q Consensus 70 ~~~~s~~~~~Krl~yl~l~~~~~-~~~e~~~l~in~l~kDL~~~n~~vr-~lAL~~L~~i--~~~ei~~~l~~~i~~~l~ 145 (555)
.+..++..+.+-++..++....+ .+++. +-.+..+.. .-+|..+. ++|-+++|.+ ..|+ .+.+.+.+...
T Consensus 68 ~L~~~~~~E~r~~ai~~l~~~~k~~~~~~-l~~~~~~l~--~~~nWd~~D~~a~~~~g~~~~~~p~---~~~~~l~~W~~ 141 (232)
T 3jxy_A 68 ELWDLPEREFQAAALDIMQKYKKHINETH-IPFLEELIV--TKSWWDSVDSIVPTFLGDIFLKHPE---LISAYIPKWIA 141 (232)
T ss_dssp HHHTSSBHHHHHHHHHHHHHTGGGCCGGG-HHHHHHHHT--SSCCHHHHHHHTTTHHHHHHHHCGG---GGGGTHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHc--cCCChHHHHHhhHHHHHHHHHHCHH---HHHHHHHHHhc
Confidence 35566666666666666654322 12322 111222322 24555544 3444444433 1222 12245567788
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHH
Q 008746 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPV 225 (555)
Q Consensus 146 d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~ 225 (555)
|+++++||.|+.+++..+. ..+. ......+... ..|++..|..+.--+|.++++.+|+ .
T Consensus 142 s~~~w~rR~ai~~~l~~~~-~~d~---~~~~~~i~~~-~~d~~~yV~kAvgW~Lr~~~k~~p~----------------~ 200 (232)
T 3jxy_A 142 SDNIWLQRAAILFQLKYKQ-KMDE---ELLFWIIGQL-HSSKEFFIQKAIGWVLREYAKTNPD----------------V 200 (232)
T ss_dssp SSCHHHHHHHHHTTTTCGG-GCCH---HHHHHHHHHH-TTCCCHHHHHHHHHHHHHHTTTCHH----------------H
T ss_pred CCchHHHHHHHHHHHHHHh-CCCH---HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhCHH----------------H
Confidence 9999999999887654332 1111 1233445554 6899999999999999999988763 2
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHH
Q 008746 226 IYYLLNRIKEFSEWAQCLVLELVA 249 (555)
Q Consensus 226 ~~~L~~~l~~~~pw~q~~iL~~L~ 249 (555)
+...++.- ..++|..-+.++-|.
T Consensus 201 v~~fl~~~-~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 201 VWEYVQNN-ELAPLSKREAIKHIK 223 (232)
T ss_dssp HHHHHHHS-CCCHHHHHHHTTTTH
T ss_pred HHHHHHHC-CCCHHHHHHHHHhcc
Confidence 23333332 677888777776554
No 115
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=86.62 E-value=14 Score=39.10 Aligned_cols=129 Identities=13% Similarity=0.110 Sum_probs=82.7
Q ss_pred cCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhcc---CCCC
Q 008746 72 SATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL---KDNN 148 (555)
Q Consensus 72 ~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l---~d~~ 148 (555)
...+.-+++.=|-+.+.-+.+.-.+ .--+++.+...|+|+++.||+.|..+|.-+..++-++.++..+=.+| .|-+
T Consensus 272 l~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDLS 350 (800)
T 3oc3_A 272 LDSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELIS 350 (800)
T ss_dssp GGCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSCC
T ss_pred cCCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcccc
Confidence 3555666777777777655111112 34668889999999999999999999988865554444444444443 3323
Q ss_pred hHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 008746 149 SYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (555)
Q Consensus 149 ~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~ 203 (555)
+-+ .....-+.+++...+....++..++.|..+ +..+-++|+.+++.++..+.
T Consensus 351 AST-gSVMdLLAkL~s~p~~a~~dp~LVPRL~PF-LRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 351 VSK-TSNLSLLTKIYRENPELSIPPERLKDIFPC-FTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp TTH-HHHHHHHHHHHHHCTTCCCCSGGGGGTGGG-GTCSSHHHHHHHHHHTTTCC
T ss_pred hhh-HHHHHHHHHHHcCCcccccChHHHHHHHhh-hcCCcHHHHHHHHHHHHHHH
Confidence 222 122223344455445544457788888888 68899999999998887653
No 116
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=86.31 E-value=1.7 Score=47.70 Aligned_cols=82 Identities=6% Similarity=-0.057 Sum_probs=46.4
Q ss_pred HHHHHHHHHhccccCCCChHHHHHH----HHHhh--hcCCcHHHHHHHHHHHHHHHhcC--C--------ch----hH--
Q 008746 464 AKAALIWMLGEYSQDMQDAPYILES----LTENW--EEEPSAEVRLHLLTAVMKCFFKR--P--------PE----TQ-- 521 (555)
Q Consensus 464 ~~~~~~wiiGEy~~~~~~~~~~l~~----l~~~~--~~e~~~~vr~~~L~a~~Kl~~~~--p--------~~----~~-- 521 (555)
++..++-++|-.+..-. ..++.+. ++... ..++++.+-..+|.+++=+|... | .. .+
T Consensus 555 lrv~~ig~Lg~LA~~~~-~~~~n~~Ig~fLl~~l~~~~~~~~~v~~EalnaifDIyaD~~~~yD~~Vf~~~~~l~~L~~~ 633 (684)
T 4gmo_A 555 LGVKCIGVVGSLAHDPA-PIEVNREVGVFLVTLLRQSNNVPPAEIVEALNQLFDIYGDEELACDKEVFWKDGFLKHLEEF 633 (684)
T ss_dssp HHHHHHHHHHHHTSTTS-CHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHSCCTTSHHHHHTTTTTTHHHHHHHH
T ss_pred hhhhHHHHHHHhcCCCC-cHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCccccHHHHHhccHHHHHHHH
Confidence 67778888988776433 3333332 22221 12333788888999998888752 1 00 12
Q ss_pred -HHHHHHHHHhccCCCcchhhccccc
Q 008746 522 -KVLGAALAAGLADFHQVVFYGFFPP 546 (555)
Q Consensus 522 -~~l~~vl~~~~~d~d~evq~Ra~~~ 546 (555)
+.++..++.-....++|+|.|+-|.
T Consensus 634 vp~~k~~~K~idK~k~~elr~r~~e~ 659 (684)
T 4gmo_A 634 LPKMRTLTKGIDKRTQPELRTRADEA 659 (684)
T ss_dssp HHHHHHHHHTSCTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 2233333333345678999987654
No 117
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=85.33 E-value=59 Score=37.42 Aligned_cols=215 Identities=13% Similarity=0.077 Sum_probs=111.0
Q ss_pred HHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcccccccceeeec
Q 008746 268 DRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQ 347 (555)
Q Consensus 268 ~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~~~f~~~ 347 (555)
..+.++++....+|-+.+-.+...... ...+... +-.+.++++||.|+..+...+..+...+.
T Consensus 35 ~~ly~p~~~~r~qA~~~L~q~q~sp~a-----w~~~~~i---L~~s~~~~vR~fAa~~L~~~I~~~W~~L~--------- 97 (1073)
T 3gjx_A 35 NCLYHGEGAQQRMAQEVLTHLKEHPDA-----WTRVDTI---LEFSQNMNTKYYGLQILENVIKTRWKILP--------- 97 (1073)
T ss_dssp HTTTCSSHHHHHHHHHHHHTSSCCSCH-----HHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSC---------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHcCchH-----HHHHHHH---hcCCCCHHHHHHHHHHHHHHHHhhhhhCC---------
Confidence 344455666667776666666544322 1111111 12356889999999999988776532211
Q ss_pred cCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcc-cCc-HHHHHHHHHHHhhcccch-
Q 008746 348 YNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQ-QYD-VNAIVDRLLQFLEMEKDY- 424 (555)
Q Consensus 348 ~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~-~~~-~~~~i~~ll~ll~~~~~~- 424 (555)
.++-..+|..-++.+...++..+ ....++.++.++...++.++.+ ||+ +..+++.+++++..+...
T Consensus 98 ~e~~~~LR~~Ll~~l~~~~~~~~-----------~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~ 166 (1073)
T 3gjx_A 98 RNQCEGIKKYVVGLIIKTSSDPT-----------CVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLC 166 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGG-----------GGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCcc-----------ccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHHH
Confidence 12224567776666665433210 0012345556666666666654 443 223555555554322100
Q ss_pred ---------hHHH------------HHHHHHHHHHhCCCCcchHHHHHhhhcccCCCchHHHHHHHHHHhccccCCCC--
Q 008746 425 ---------VTAE------------ALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD-- 481 (555)
Q Consensus 425 ---------v~~e------------~i~~i~~ii~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~wiiGEy~~~~~~-- 481 (555)
+.+| .-..+++.++.. .+.+..++.+++ ..-+++++...++-.+|-|...++-
T Consensus 167 ~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~---~~~Il~ll~~iL-~~~~~~~lv~~~L~~L~~~~sWI~i~~ 242 (1073)
T 3gjx_A 167 QNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE---FSQIFQLCQFVM-ENSQNAPLVHATLETLLRFLNWIPLGY 242 (1073)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT---CHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHTTTSCTHH
T ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH---HHHHHHHHHHHh-cccCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 1111 111222222221 112233333333 2235667777788899999988863
Q ss_pred --hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcC
Q 008746 482 --APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKR 516 (555)
Q Consensus 482 --~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~ 516 (555)
..+++..+...+. .. +++|..++..+.-+..+.
T Consensus 243 i~~~~ll~~L~~~~L-~~-~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 243 IFETKLISTLIYKFL-NV-PMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp HHSSSHHHHHHHHTS-SS-HHHHHHHHHHHHHHHHSC
T ss_pred hccchHHHHHHHHhc-CC-hHHHHHHHHHHHHHHhcc
Confidence 1245555543443 23 888999888888877653
No 118
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=84.93 E-value=1.2 Score=50.95 Aligned_cols=96 Identities=9% Similarity=0.008 Sum_probs=67.3
Q ss_pred hhcCCCCc-hhHHH-HHHHHHHhcC--CCChHHHHHHHHHHhHcC-CCChHHHHHHHHHhcCC-------ChhhhHHHHH
Q 008746 70 MCSATSDI-VLKKM-CYLYVGNYAK--VNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSL-------RVANLVEYLV 137 (555)
Q Consensus 70 ~~~~s~~~-~~Krl-~yl~l~~~~~--~~~e~~~l~in~l~kDL~-~~n~~vr~lAL~~L~~i-------~~~ei~~~l~ 137 (555)
.+...+|. ++.++ ++..+..+.. ..++.+-.+++.+..-.+ ++++ .|..+|.++-.+ -+++-.+.+.
T Consensus 767 ~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~ 845 (997)
T 1vsy_5 767 GLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKIL 845 (997)
T ss_dssp TTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTH
T ss_pred HHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 33444444 67777 6665555532 245555678888887776 6889 999999985332 1223335677
Q ss_pred HHHhhccCCCC-hHHHHHHHHHHHHHhhhC
Q 008746 138 GPLGLGLKDNN-SYVRTVAVIGVLKLYHIS 166 (555)
Q Consensus 138 ~~i~~~l~d~~-~~VRk~A~lal~kl~~~~ 166 (555)
..|.++|.|+. ..||..|+.++.-+.+-.
T Consensus 846 ~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 846 EFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 88899999999 999999999998886644
No 119
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=82.89 E-value=31 Score=33.91 Aligned_cols=139 Identities=12% Similarity=0.129 Sum_probs=76.0
Q ss_pred CChHHHHHHHHHHHHHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChh-----HHHH
Q 008746 187 PDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN-----EIFD 261 (555)
Q Consensus 187 ~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~-----~~~~ 261 (555)
++...+.-++.-|..+.+.+.+- ..+++.+.-+..|++.+...+.-.|..+|+.|..++-.... ....
T Consensus 130 ~~~~~lr~aLfsLk~~~q~D~~F-------a~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 130 SSGPELRRSLFSLKQIFQEDKDL-------VPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTH-------HHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred CCcHHHHHHHHHHHHHhhcchHH-------HHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 34445555556666654444431 12233333355566666666777888888888887743110 1134
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhcCCcchhHHHHHHHHHH------------HHHHHhc---CCCchhHHHHHHHH
Q 008746 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKA------------PLLTLVS---SGSPEQSYAVLSHL 326 (555)
Q Consensus 262 i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~~~~~~l~~i~~------------~L~~ll~---~~~~~~ry~aL~~l 326 (555)
++..+..++.+.+..|+..|...+..+..+.+.... .+.+.+. .|+.+|. +.|++++.-|+-.|
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~-lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAP-LFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccch-HHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 666777777777788888887776544332221111 1111111 2444554 56677776666666
Q ss_pred HHHHhhC
Q 008746 327 HILVMRA 333 (555)
Q Consensus 327 ~~l~~~~ 333 (555)
..++...
T Consensus 282 N~lL~~a 288 (339)
T 3dad_A 282 NKTLAAL 288 (339)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 6665544
No 120
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=81.80 E-value=51 Score=34.01 Aligned_cols=331 Identities=10% Similarity=0.062 Sum_probs=154.5
Q ss_pred CchHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccchHhhhHHhhhc--cHHHHHHHHhhcCCCChhHH-HHHH---HH
Q 008746 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALI--SKPVIYYLLNRIKEFSEWAQ-CLVL---EL 247 (555)
Q Consensus 174 ~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~~~~~~~~~~~ll--~~~~~~~L~~~l~~~~pw~q-~~iL---~~ 247 (555)
.....+..+|-..++..++...+.++.++...+| +.+ .+..++ ++.....+.......++|.. .... ..
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~--~~~---~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~l 151 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDK--YGD---DTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSL 151 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSS--SSH---HHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCc--chH---HHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHH
Confidence 4445566665556788888888888999888765 100 011111 11122334443334565544 3333 33
Q ss_pred HHccCCCChhHHHHHHH--HHHHHhccC-chHHHHHHHHHHHHhcCCcchhHH-------HHHHHHHHHHHHHhcCC---
Q 008746 248 VAKYVPLDSNEIFDIMN--LLEDRLQHA-NGAVVLSTIKVFLHLTLSMTDVHQ-------QVYERIKAPLLTLVSSG--- 314 (555)
Q Consensus 248 L~~~~~~~~~~~~~i~~--~l~~~L~s~-~~aV~~eai~~i~~l~~~~~~~~~-------~~l~~i~~~L~~ll~~~--- 314 (555)
+....+.+.+....+++ -+...|++. +....+-|++++-.+-.. +.... ..+..+..++...+.+.
T Consensus 152 l~~~~~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~ 230 (480)
T 1ho8_A 152 LVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLAT 230 (480)
T ss_dssp HTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred HhccCCccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcccccc
Confidence 33333444445555555 455555552 233344455555322211 11111 11111222222222111
Q ss_pred ----------CchhHHHHHHHHHHHHhhCCcc----cccccc---ee--eeccCCcHHHHHHHHHHHHHccCCC--CHHH
Q 008746 315 ----------SPEQSYAVLSHLHILVMRAPFI----FASDYK---HF--YCQYNEPSYVKKLKLEMLTAVANES--NTYE 373 (555)
Q Consensus 315 ----------~~~~ry~aL~~l~~l~~~~p~~----~~~~~~---~f--~~~~~dd~~Ir~~aL~iL~~l~~~~--N~~~ 373 (555)
...+.|-++-.+=. +.-.|++ ...++. .+ .+....-+-|-|.++.+|..+.+.. +-..
T Consensus 231 ~~~~~~~~~~~~Ql~Y~~ll~iWl-LSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~ 309 (480)
T 1ho8_A 231 RIVATNSNHLGIQLQYHSLLLIWL-LTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK 309 (480)
T ss_dssp --------CCHHHHHHHHHHHHHH-HTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred ccccccCCCccHHHHHHHHHHHHH-HHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhh
Confidence 12235655544322 2223321 111111 00 1233334667777888888887765 2222
Q ss_pred HHHHH------HHH---h---hcCCHHHHHHHHHHHHHHhcccCc---HHHHHHH-HHHHhhcccchhHHHHHHHHHHHH
Q 008746 374 IVTEL------CEY---A---ANVDIPIARESIRAVGKIALQQYD---VNAIVDR-LLQFLEMEKDYVTAEALVLVKDLL 437 (555)
Q Consensus 374 Iv~eL------~~y---~---~~~d~~~~~~~i~~i~~la~~~~~---~~~~i~~-ll~ll~~~~~~v~~e~i~~i~~ii 437 (555)
.+.++ ... + .-.|+++..++-..-..+.+.+.+ ...|..- .-..|+-+..+-.+.-|. +=.
T Consensus 310 ~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~---ENa 386 (480)
T 1ho8_A 310 VIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWS---DNI 386 (480)
T ss_dssp HHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHH---HHS
T ss_pred HHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHH---HHH
Confidence 22221 111 1 124677766554444444444322 1222221 112222222222223221 112
Q ss_pred HhCCCCcchHHHHHhhhcccC--------CCchHHHHHHHHHHhccccCCCChHHHHHHH------HHhhhcCCcHHHHH
Q 008746 438 RKYPQWSHDCIAVVGSISSQN--------VQEPKAKAALIWMLGEYSQDMQDAPYILESL------TENWEEEPSAEVRL 503 (555)
Q Consensus 438 ~~~~~~~~~~~~~l~~l~~~~--------~~~~~~~~~~~wiiGEy~~~~~~~~~~l~~l------~~~~~~e~~~~vr~ 503 (555)
.+..+-.-..+..+.+++... -+++.+.+.++.=||||....|....+++.+ .+-...++ ++||.
T Consensus 387 ~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d-~~Vr~ 465 (480)
T 1ho8_A 387 DEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSD-SRVKY 465 (480)
T ss_dssp GGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSS-HHHHH
T ss_pred HHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCC-HHHHH
Confidence 222222223344455554211 2467889999999999999999877776654 22333455 99999
Q ss_pred HHHHHHHHHHhc
Q 008746 504 HLLTAVMKCFFK 515 (555)
Q Consensus 504 ~~L~a~~Kl~~~ 515 (555)
.+|.++-|+...
T Consensus 466 ~AL~avQklm~~ 477 (480)
T 1ho8_A 466 EALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998654
No 121
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=81.50 E-value=5.3 Score=34.08 Aligned_cols=80 Identities=11% Similarity=0.012 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC----Chh---hhH-HHHHHHHhhccCCCChHHHH
Q 008746 82 MCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL----RVA---NLV-EYLVGPLGLGLKDNNSYVRT 153 (555)
Q Consensus 82 l~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~~---ei~-~~l~~~i~~~l~d~~~~VRk 153 (555)
-+.+-+.-....+++..--++-+|+|-+++.||.+.-.||..|-.+ |.+ +++ ..++..+.++++..++.||+
T Consensus 24 ~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~ 103 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCE 103 (140)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHH
Confidence 3455566666667777788899999999999999998888876543 111 110 22333344444456778888
Q ss_pred HHHHHHHH
Q 008746 154 VAVIGVLK 161 (555)
Q Consensus 154 ~A~lal~k 161 (555)
+....+..
T Consensus 104 kil~li~~ 111 (140)
T 3ldz_A 104 KLKALMVE 111 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655444
No 122
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=81.14 E-value=4.9 Score=44.07 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=32.1
Q ss_pred cCCCChHHHHHHHHHHHHHhhhCCCcc---cCCCchH-HHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 144 LKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPP-TLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 144 l~d~~~~VRk~A~lal~kl~~~~p~~~---~~~~~~~-~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
|.++++.+|..|+.|+..+.. +|+.. ...+.+. .+..+ +.|++..|+.+|..+|..++..
T Consensus 43 L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~l-L~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 43 LKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTET-LTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHH-cCCCCHHHHHHHHHHHHHHHhh
Confidence 555566666666666666553 33221 1133333 33444 5677777777777776666543
No 123
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=76.98 E-value=23 Score=30.42 Aligned_cols=100 Identities=8% Similarity=-0.084 Sum_probs=63.4
Q ss_pred HHHhhh-hcCCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC----Ch---hhhH-HH
Q 008746 65 FGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL----RV---ANLV-EY 135 (555)
Q Consensus 65 f~~vi~-~~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~---~ei~-~~ 135 (555)
|-..|. +.+....+.---+.+-+.-....+++..--++.+|+|-++++||.+.-.||..|-.+ +. .+++ ..
T Consensus 12 ~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~ 91 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFR 91 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHH
Confidence 444443 333333333344556666677777888888999999999999999999999877553 21 1121 23
Q ss_pred HHHHHhhccCC------CChHHHHHHHHHHHHHhh
Q 008746 136 LVGPLGLGLKD------NNSYVRTVAVIGVLKLYH 164 (555)
Q Consensus 136 l~~~i~~~l~d------~~~~VRk~A~lal~kl~~ 164 (555)
++..+.+++.+ .++.||.+....+..-..
T Consensus 92 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 92 FLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 34445555543 467888887665554443
No 124
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=76.73 E-value=8.9 Score=33.59 Aligned_cols=78 Identities=10% Similarity=0.042 Sum_probs=48.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC----Ch---hhhH-HHHHHHHhhccCC-CChHHHHH
Q 008746 84 YLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL----RV---ANLV-EYLVGPLGLGLKD-NNSYVRTV 154 (555)
Q Consensus 84 yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~---~ei~-~~l~~~i~~~l~d-~~~~VRk~ 154 (555)
.+-+.-....+++..--++-+|+|-++++||.++-.||..|-.+ +. .+++ ..++..+.+++.. .++.||++
T Consensus 36 ~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~k 115 (163)
T 1x5b_A 36 IMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEK 115 (163)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHH
Confidence 33444444445666778889999999999999999998877443 11 1111 2233334444433 56788888
Q ss_pred HHHHHHH
Q 008746 155 AVIGVLK 161 (555)
Q Consensus 155 A~lal~k 161 (555)
+...+..
T Consensus 116 il~li~~ 122 (163)
T 1x5b_A 116 LKSLMVE 122 (163)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7664443
No 125
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=75.39 E-value=11 Score=42.96 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=78.0
Q ss_pred CChHHHHHHHHHHhHcCCCC-hHHHHHHHHHhcCC--Ch-h-hhHHHHHHHHhhccCC------------CChHHHHHHH
Q 008746 94 NPDLALLTINFLQRDCKDED-PMIRGLALRSLCSL--RV-A-NLVEYLVGPLGLGLKD------------NNSYVRTVAV 156 (555)
Q Consensus 94 ~~e~~~l~in~l~kDL~~~n-~~vr~lAL~~L~~i--~~-~-ei~~~l~~~i~~~l~d------------~~~~VRk~A~ 156 (555)
.++..-.+.+.+.+-|.|++ ..||..|-.+|+.+ +. + ...+.++....+.+.. ++...|..|+
T Consensus 837 ~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aV 916 (997)
T 1vsy_5 837 TEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNV 916 (997)
T ss_dssp CTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHH
Confidence 34443466788999999999 99999999999987 43 3 3334455555554422 1114667999
Q ss_pred HHHHHHhhhCCCcccCCCchHHHHHHH---hcCCChHHHHHHHHHHHHHHhhcc
Q 008746 157 IGVLKLYHISAPTCIDADFPPTLKHLM---LNDPDPQVVANCLSALQEIWSLEA 207 (555)
Q Consensus 157 lal~kl~~~~p~~~~~~~~~~~l~~ll---l~d~d~~V~~~a~~~L~~i~~~~~ 207 (555)
++++.+..-.|-.+..|.|+|.+...| .+|+.| |..++-..+.+.-+...
T Consensus 917 LgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~ 969 (997)
T 1vsy_5 917 LGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRA 969 (997)
T ss_dssp HHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccc
Confidence 999999999999875589997665553 234444 66777777777765444
No 126
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=74.79 E-value=4.2 Score=37.58 Aligned_cols=68 Identities=9% Similarity=0.000 Sum_probs=52.4
Q ss_pred HHHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc
Q 008746 103 NFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (555)
Q Consensus 103 n~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~ 170 (555)
..+.+=..|+|+.+|-.|+-++-......-.+.+.+.+..++.|++-||||..+-++--+++.+|+.+
T Consensus 127 ~~i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v 194 (220)
T 2b6c_A 127 TIFALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWV 194 (220)
T ss_dssp HHHHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHH
Confidence 34666778999999998877553333333345566777779999999999999999999999888765
No 127
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=74.36 E-value=17 Score=32.11 Aligned_cols=83 Identities=8% Similarity=-0.075 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC---Chh----hhH-HHHHHHHhhccC------C
Q 008746 81 KMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVA----NLV-EYLVGPLGLGLK------D 146 (555)
Q Consensus 81 rl~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i---~~~----ei~-~~l~~~i~~~l~------d 146 (555)
--+.+-+.-....+++..-.++-.|+|-++++|+.++-.||..|-.+ +.+ +++ ..++..+.+++. .
T Consensus 31 w~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~ 110 (171)
T 1juq_A 31 WEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDR 110 (171)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTT
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCC
Confidence 34455666666666777788899999999999999999999887554 111 111 223344445543 2
Q ss_pred CChHHHHHHHHHHHHHh
Q 008746 147 NNSYVRTVAVIGVLKLY 163 (555)
Q Consensus 147 ~~~~VRk~A~lal~kl~ 163 (555)
.++.||++++..+..-.
T Consensus 111 ~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 111 VSEKVKTKVIELLYSWT 127 (171)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 46899999876655544
No 128
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=73.51 E-value=5.4 Score=37.32 Aligned_cols=167 Identities=7% Similarity=-0.040 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHH-HHHhcCCCcchhH----------HHhhhhcCCCCchhHHHHHHHHHHh
Q 008746 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVI-SYMTIGIDVSAVF----------GEMVMCSATSDIVLKKMCYLYVGNY 90 (555)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~k~~~l~kli-~~~~~G~d~s~lf----------~~vi~~~~s~~~~~Krl~yl~l~~~ 90 (555)
..+++++|+.+. +..++..+.+.. -....|..++.+= ..+..+..++.++.+-++.+.+..-
T Consensus 3 ~~~i~~~L~~l~-------d~~~a~~m~~~g~~~~~~GV~~P~lR~lAK~~~~~~~la~~Lw~~~~~E~r~lA~li~~~~ 75 (235)
T 1t06_A 3 FKTVMQELEALG-------KERTKKIYISNGAHEPVFGVATGAMKPIAKKIKLNQELAEELYATGNYDAMYFAGIIADPK 75 (235)
T ss_dssp HHHHHHHHHHHC-------CHHHHHHHHHHTCCSSCCCCCGGGGHHHHHTCCCCHHHHHHHHHTCCHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcc-------CHHHHHHHHHhCCCCccCCCchHHHHHHHHHhccCHHHHHHHHcCCcHHHHHHHHHhhCHH
Confidence 567888888853 245666666641 1123454333220 1123456666676666655433211
Q ss_pred cCCCChHHHHHHHHHHhHcCCCChHHHHHHH-HHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHH----HHHHHhhh
Q 008746 91 AKVNPDLALLTINFLQRDCKDEDPMIRGLAL-RSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVI----GVLKLYHI 165 (555)
Q Consensus 91 ~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL-~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~l----al~kl~~~ 165 (555)
...++. +..+..+. +|+.+.-... ..++. .+...+. +.+.+.|++.++|+.|+. -+.....+
T Consensus 76 -~~~~~~----~~~~v~~~--~nWd~~D~~~~~l~~~--~~~~~~~----~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k 142 (235)
T 1t06_A 76 -AMSESD----FDRWIDGA--YFYMLSDYVVAVTLSE--SNIAQDV----ADKWIASGDELKMSAGWSCYCWLLGNRKDN 142 (235)
T ss_dssp -GCCHHH----HHHHHHTC--CSHHHHHHTHHHHHTT--SSSHHHH----HHHHHHSCCHHHHHHHHHHHHHHHHHSCGG
T ss_pred -hcCHHH----HHHHHhCC--CcHHHHHHHHHHHHhc--CchHHHH----HHHHHcCcHHHHHHHHHHHHHHHHhhcccc
Confidence 111111 23333322 2344433222 22322 2333222 335666777777777776 33442222
Q ss_pred CCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc
Q 008746 166 SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (555)
Q Consensus 166 ~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~~~~~ 209 (555)
.++.-....+.+.+... +.|++..|..+.--+|.++++.+|..
T Consensus 143 ~~~~~~~~~~l~~i~~~-l~~~~~~v~kAi~W~Lr~~gk~~~~~ 185 (235)
T 1t06_A 143 AFSESKISDMLEMVKDT-IHHSPERTKSAMNNFLNTVAISYVPL 185 (235)
T ss_dssp GSCHHHHHHHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CcChhhHHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHhhCHHH
Confidence 22111114455666555 47777777777777777777777654
No 129
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=71.53 E-value=14 Score=31.71 Aligned_cols=79 Identities=10% Similarity=-0.028 Sum_probs=53.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC----Ch---hhhH-HHHHHHHhhccCC------CCh
Q 008746 84 YLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL----RV---ANLV-EYLVGPLGLGLKD------NNS 149 (555)
Q Consensus 84 yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~---~ei~-~~l~~~i~~~l~d------~~~ 149 (555)
.+-+.-....+++..--++-+|+|-++++||.+.-.||..|-.+ |. .+++ ..++..+.+.+.+ .++
T Consensus 22 ~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~ 101 (148)
T 1mhq_A 22 IQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATG 101 (148)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCH
Confidence 44455555556677788889999999999999999999877553 22 1222 3455556666653 478
Q ss_pred HHHHHHHHHHHHH
Q 008746 150 YVRTVAVIGVLKL 162 (555)
Q Consensus 150 ~VRk~A~lal~kl 162 (555)
.||++++..+..-
T Consensus 102 ~Vk~kil~li~~W 114 (148)
T 1mhq_A 102 KVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8998876554443
No 130
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=70.46 E-value=27 Score=32.45 Aligned_cols=62 Identities=5% Similarity=-0.051 Sum_probs=42.9
Q ss_pred cCCCChHHHHHHHH----HhcCCC----hhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc
Q 008746 109 CKDEDPMIRGLALR----SLCSLR----VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (555)
Q Consensus 109 L~~~n~~vr~lAL~----~L~~i~----~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~ 170 (555)
..|+|+..|-.|+- .++... ...-.+.+...+...+.|++.+|||+..-++..+.+.+|+..
T Consensus 117 ~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~ 186 (235)
T 1t06_A 117 IASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLH 186 (235)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHH
Confidence 36677888877777 555543 233456667777777888888888888888877777766654
No 131
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=69.50 E-value=25 Score=32.52 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC------------ChhhhHHHHHHHHhhccCCCChH
Q 008746 83 CYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------RVANLVEYLVGPLGLGLKDNNSY 150 (555)
Q Consensus 83 ~yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i------------~~~ei~~~l~~~i~~~l~d~~~~ 150 (555)
+.+.+.-....+++..--++.+|+|-++++||.+.-.||..|-.+ .+.++.+.+...+. ...++.
T Consensus 28 ~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~---~~~~~~ 104 (226)
T 3zyq_A 28 SILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLK---RQVEVN 104 (226)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHH---HCCCHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhc---cCCCHH
Confidence 445555555566677788899999999999999999999887664 33444444433322 245678
Q ss_pred HHHHHHHHHHHH
Q 008746 151 VRTVAVIGVLKL 162 (555)
Q Consensus 151 VRk~A~lal~kl 162 (555)
||++++.-+..-
T Consensus 105 Vk~kil~li~~W 116 (226)
T 3zyq_A 105 VRNKILYLIQAW 116 (226)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998876644433
No 132
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=66.65 E-value=6.9 Score=36.44 Aligned_cols=67 Identities=6% Similarity=-0.000 Sum_probs=50.4
Q ss_pred HHHhHcCCCChHHHHHHHHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcc
Q 008746 104 FLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (555)
Q Consensus 104 ~l~kDL~~~n~~vr~lAL~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~ 170 (555)
.+.+=..|+|+.+|-.|+-.+-......-.+.+.+.+..++.|++.||||..+-++--+++.+|+.+
T Consensus 135 ~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v 201 (232)
T 3jxy_A 135 YIPKWIASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVV 201 (232)
T ss_dssp THHHHHHSSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 3445557889999999887654433223334556667788999999999999999999999888764
No 133
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=62.57 E-value=55 Score=32.08 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=45.9
Q ss_pred ccCCCChHHHHHHHHHHHHHhhhCCCccc---CCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCI---DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 143 ~l~d~~~~VRk~A~lal~kl~~~~p~~~~---~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
.|.+++...+|.|+..+.+++..+++.+. ..+=+..|.+. ..+.+.....-++.+|.++-.+
T Consensus 126 kL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~v-i~~~~gN~q~Y~L~AL~~LM~~ 190 (339)
T 3dad_A 126 KLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRV-GAAADHNYQSYILRALGQLMLF 190 (339)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHH-HTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHH-HHhcChHHHHHHHHHHHHHHhc
Confidence 34457788899999999998887777651 12334556665 4778999999999999998654
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=61.27 E-value=32 Score=31.47 Aligned_cols=74 Identities=14% Similarity=0.047 Sum_probs=49.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhHcCCCChHHHHHHHHHhcCC------------ChhhhHHHHHHHHhhccCCCChHH
Q 008746 84 YLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------RVANLVEYLVGPLGLGLKDNNSYV 151 (555)
Q Consensus 84 yl~l~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i------------~~~ei~~~l~~~i~~~l~d~~~~V 151 (555)
.+.+......+++..--++-+|+|-++++||.+.-.||..|-.+ .+.++.+.+...+.+ ..++.|
T Consensus 26 ~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~V 102 (220)
T 1dvp_A 26 ILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHENV 102 (220)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHHH
T ss_pred HHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHHH
Confidence 34455555566667778889999999999999999999877653 233444444433322 457889
Q ss_pred HHHHHHHHH
Q 008746 152 RTVAVIGVL 160 (555)
Q Consensus 152 Rk~A~lal~ 160 (555)
|++++.-+.
T Consensus 103 k~kil~li~ 111 (220)
T 1dvp_A 103 RQKMLELVQ 111 (220)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887754433
No 135
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=60.85 E-value=1.3e+02 Score=29.47 Aligned_cols=115 Identities=13% Similarity=0.248 Sum_probs=69.0
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhcCCcch--hHHHHHH---HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCcc
Q 008746 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD--VHQQVYE---RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI 336 (555)
Q Consensus 262 i~~~l~~~L~s~~~aV~~eai~~i~~l~~~~~~--~~~~~l~---~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~ 336 (555)
+......+++|.|.-....+++++.++--..+. +...-+. -+ ..+..+|.++..++++-|...+...+.
T Consensus 210 Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nL-kl~M~LL~d~sk~Iq~EAFhVFKvFVA----- 283 (341)
T 1upk_A 210 FFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENL-KLMMNLLRDKSRNIQFEAFHVFKVFVA----- 283 (341)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHH-HHHHHHhcCchhchhhhhhhheeeeee-----
Confidence 444455688999988899999998876432221 1111111 11 124566778888888888877664442
Q ss_pred cccccceeeeccCCcHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcC--CHHHHHH---HHHHHHHHh
Q 008746 337 FASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV--DIPIARE---SIRAVGKIA 401 (555)
Q Consensus 337 ~~~~~~~f~~~~~dd~~Ir~~aL~iL~~l~~~~N~~~Iv~eL~~y~~~~--d~~~~~~---~i~~i~~la 401 (555)
.++.|+-|. +||.+ |=+.+++-|..|..+. |+.|..+ +|+.|..+.
T Consensus 284 ----------NP~K~~~I~----~IL~~-----Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L~ 334 (341)
T 1upk_A 284 ----------NPNKTQPIL----DILLK-----NQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLK 334 (341)
T ss_dssp ----------CSSCCHHHH----HHHHH-----THHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTCC
T ss_pred ----------CCCCChHHH----HHHHH-----HHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhCC
Confidence 234444443 33332 6777777777777665 5677765 777775554
No 136
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=59.34 E-value=43 Score=28.86 Aligned_cols=80 Identities=9% Similarity=-0.024 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHhHcC-CCChHHHHHHHHHhcCC----Chh---hhH-HHHHHH-HhhccC---CCC
Q 008746 82 MCYLYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSL----RVA---NLV-EYLVGP-LGLGLK---DNN 148 (555)
Q Consensus 82 l~yl~l~~~~~~~~e~~~l~in~l~kDL~-~~n~~vr~lAL~~L~~i----~~~---ei~-~~l~~~-i~~~l~---d~~ 148 (555)
-+.+-+.-....+++..--++-+|+|-++ ++|+.++-.||..|-.+ +.+ +++ +.++.. +.+.+. +++
T Consensus 35 ~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~ 114 (157)
T 1elk_A 35 ALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPP 114 (157)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCC
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCc
Confidence 34445555555667777889999999998 58999999998877543 111 121 123333 334442 345
Q ss_pred hHHHHHHHHHHHH
Q 008746 149 SYVRTVAVIGVLK 161 (555)
Q Consensus 149 ~~VRk~A~lal~k 161 (555)
..||++++..+..
T Consensus 115 ~~Vk~kil~li~~ 127 (157)
T 1elk_A 115 TIVHDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6898887655444
No 137
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=53.11 E-value=19 Score=37.15 Aligned_cols=73 Identities=15% Similarity=0.276 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcc----------CchHHHHHHHHHHHHhcCCcchhHHHHHHH--HHHHHHHHhcCCCchhHHHHHHHHH
Q 008746 260 FDIMNLLEDRLQH----------ANGAVVLSTIKVFLHLTLSMTDVHQQVYER--IKAPLLTLVSSGSPEQSYAVLSHLH 327 (555)
Q Consensus 260 ~~i~~~l~~~L~s----------~~~aV~~eai~~i~~l~~~~~~~~~~~l~~--i~~~L~~ll~~~~~~~ry~aL~~l~ 327 (555)
..++..|..+|.+ .++.++--|+.-++++....|..+. ++++ ....+..|++++|+++||-||.++.
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~-i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID-VLDKTGGKADIMELLNHSDSRVKYEALKATQ 472 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHH-HHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhH-HHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3566777777763 3566666666767665544343221 2222 2344567899999999999999999
Q ss_pred HHHhhC
Q 008746 328 ILVMRA 333 (555)
Q Consensus 328 ~l~~~~ 333 (555)
.++..+
T Consensus 473 klm~~~ 478 (480)
T 1ho8_A 473 AIIGYT 478 (480)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 887654
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=50.05 E-value=57 Score=28.29 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 154 ~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
...+.++-+.+..++.. .+.+..|++. ++.+||.|...|+.+|-.+.++
T Consensus 34 ~~~leicD~I~~~~~~~--keA~ral~kr-l~~~n~~vql~AL~LLd~~vkN 82 (163)
T 1x5b_A 34 SLIMDICDKVGSTPNGA--KDCLKAIMKR-VNHKVPHVALQALTLLGACVAN 82 (163)
T ss_dssp HHHHHHHHHHHHSSSHH--HHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccH--HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHH
Confidence 44555666666555443 4566777777 5889999999999998888764
No 139
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=50.01 E-value=31 Score=29.25 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhCCccccc----------ccceeeeccC----Cc--HHHHHHHHHHHHHc
Q 008746 302 RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFAS----------DYKHFYCQYN----EP--SYVKKLKLEMLTAV 365 (555)
Q Consensus 302 ~i~~~L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~----------~~~~f~~~~~----dd--~~Ir~~aL~iL~~l 365 (555)
.+...|..=|++++++++|-+|+.|..++.++++-|.. .+..|-..++ ++ ..||.+|=+++-.+
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 34555555567788999999999999999887764432 2233432222 23 77888888888888
Q ss_pred cCCCC
Q 008746 366 ANESN 370 (555)
Q Consensus 366 ~~~~N 370 (555)
-++++
T Consensus 129 ~d~~~ 133 (140)
T 1vdy_A 129 FSEEN 133 (140)
T ss_dssp TCCSS
T ss_pred hCcCC
Confidence 77654
No 140
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=49.27 E-value=87 Score=30.67 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccCc---------HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh
Q 008746 369 SNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD---------VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRK 439 (555)
Q Consensus 369 ~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~---------~~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~ 439 (555)
.|.+....++...+.+.+.-.++.+++.+|.+-..-++ ....+..++.+|+.....+.-|+..+++ +...
T Consensus 205 ~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFK-vFVA 283 (341)
T 1upk_A 205 QHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK-VFVA 283 (341)
T ss_dssp HTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH-HHHH
T ss_pred HhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhhee-eeee
Confidence 37777777777777777888888999999887754222 1236788999999888888888888877 5556
Q ss_pred CCCCcchHH
Q 008746 440 YPQWSHDCI 448 (555)
Q Consensus 440 ~~~~~~~~~ 448 (555)
+|.....+.
T Consensus 284 NP~K~~~I~ 292 (341)
T 1upk_A 284 NPNKTQPIL 292 (341)
T ss_dssp CSSCCHHHH
T ss_pred CCCCChHHH
Confidence 888765543
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=49.13 E-value=73 Score=27.85 Aligned_cols=64 Identities=14% Similarity=0.026 Sum_probs=42.8
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 139 PLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 139 ~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
.|.++.+...+..--...+.++-+.+..++.- .+....|++. ++.+|+.|...|+.+|-.+.++
T Consensus 17 ~IekATs~~l~~~Dw~~ileicD~I~~~~~~~--k~A~ral~kr-l~~~n~~vql~AL~LLd~~vkN 80 (171)
T 1juq_A 17 WLNKATNPSNRQEDWEYIIGFCDQINKELEGP--QIAVRLLAHK-IQSPQEWEALQALTVLEACMKN 80 (171)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHH--HHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHcCCccH--HHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHH
Confidence 34454444333222355667777777666543 4566778787 5889999999999999888764
No 142
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=46.03 E-value=1.4e+02 Score=25.40 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=26.6
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhCCccccccc
Q 008746 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (555)
Q Consensus 307 L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~~ 341 (555)
|.+-+.+++|++.+.||..+...+.+.+..|...+
T Consensus 53 l~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~ei 87 (149)
T 3g2s_A 53 LAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEV 87 (149)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 33445678999999999999999988876654433
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=45.47 E-value=93 Score=26.43 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 154 ~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
...+.++-+.+..|+.- .+.+..|.+. ++.+||.|...|+.+|-.+.++
T Consensus 20 ~~~leicD~I~~~~~~~--k~a~rai~kr-l~~~n~~vql~AL~LLe~~vkN 68 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGP--THAPWLLAHK-IQSPQEKEALYALTVLEMCMNH 68 (148)
T ss_dssp HHHHHHHHHHHHSSHHH--HHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccH--HHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHH
Confidence 44455555555554332 4556777777 5889999999999998888765
No 144
>1fyh_A Interferon-gamma; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: a.26.1.3 a.26.1.3 PDB: 1eku_A 1fg9_A 3bes_L* 1hig_A
Probab=44.22 E-value=2e+02 Score=26.65 Aligned_cols=118 Identities=11% Similarity=0.100 Sum_probs=54.9
Q ss_pred CcHHHHHHHHHHHHHc-------cCCCCHHHHHHHHHHHhhcCCHHHHH---HHHHHHHHHhcccCc---HHHHHHHHHH
Q 008746 350 EPSYVKKLKLEMLTAV-------ANESNTYEIVTELCEYAANVDIPIAR---ESIRAVGKIALQQYD---VNAIVDRLLQ 416 (555)
Q Consensus 350 dd~~Ir~~aL~iL~~l-------~~~~N~~~Iv~eL~~y~~~~d~~~~~---~~i~~i~~la~~~~~---~~~~i~~ll~ 416 (555)
+|..|.|+|+.-|+.. |.....+ =++.|+.|...+++++.. -.+..+....+.-.. .+-++++.++
T Consensus 102 ~d~~vQrkAi~EL~~VM~~sG~y~q~~~~k-eIe~LK~yfNasn~Dv~dggplFl~ilknwkee~dkkIi~SQIvs~Y~K 180 (258)
T 1fyh_A 102 TDLNVQRKAIDELIQVMAELGANVSGEFVK-EAENLKKYFNAGHSDVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFK 180 (258)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCHHHHH-HHHHHHHHHC-------CCCCSSHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCcccchhHHH-HHHHHHHHhccCCccccCCCcchHHhhhhhhhccchhhHHHHHHHHHHH
Confidence 4466888888888776 2333333 347788888777666431 111222111211111 0236777777
Q ss_pred Hhhc-ccchhHHHHHHHHHH-HHHh-CCCCcchHHHHHhhhcccCCCchHHHHHHH
Q 008746 417 FLEM-EKDYVTAEALVLVKD-LLRK-YPQWSHDCIAVVGSISSQNVQEPKAKAALI 469 (555)
Q Consensus 417 ll~~-~~~~v~~e~i~~i~~-ii~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 469 (555)
+++. .+....++.+..++. +.++ +++.... +.-+.++..-.+.++.+.+-++
T Consensus 181 lFe~Lkdn~~iq~sm~~IkedL~~~~fn~s~~K-l~df~~L~ki~vnD~~IQrKAi 235 (258)
T 1fyh_A 181 LFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKK-RDDFEKLTNYSVTDLNVQRKAI 235 (258)
T ss_dssp HHHTTTTCTTTHHHHHHHHHHHHHHHTTSCHHH-HHHHHHHHTCCTTSHHHHHHHH
T ss_pred HHHhhccCHHHHHHHHHHHHHHHHHhccCcHHH-HHHHHHHHhcCCCcHHHHHHHH
Confidence 7764 233455666666653 4433 4443222 2233444322556776644443
No 145
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=43.95 E-value=4.5e+02 Score=30.85 Aligned_cols=357 Identities=9% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHhcCCChhhhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHH
Q 008746 121 LRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQ 200 (555)
Q Consensus 121 L~~L~~i~~~ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~ 200 (555)
+|.|-.+.++ +.+...+...++-....+++-.+..+..+...+-. ++....|.++ +.+ |+......+.+|.
T Consensus 146 lRwLD~ivd~---~~l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds~H----~~v~~~L~~l-L~~-~~~L~~~iLdaLs 216 (1323)
T 3s4w_B 146 LKWLDRIVDG---KDLTAQMMQLISVAPVNLQHDFITSLPEILGDSQH----ANVGKELGEL-LVQ-NTSLTVPILDVFS 216 (1323)
T ss_dssp GTTCSCCSSH---HHHHHHHHHHHHHSCTTTHHHHHHTHHHHSCGGGH----HHHHHHHHHH-HHH-CSTTHHHHHHHHH
T ss_pred HhhhcccCCH---HHHHHHHHHHHHhCcHHHHHHHHHHhHHHhcchhh----HHHHHHHHHH-Hhc-CcchHHHHHHHHH
Q ss_pred HHHhhccccchHhhhHHhhhccHHHHHHHHhhcCCCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHhcc--------
Q 008746 201 EIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQH-------- 272 (555)
Q Consensus 201 ~i~~~~~~~~~~~~~~~~~ll~~~~~~~L~~~l~~~~pw~q~~iL~~L~~~~~~~~~~~~~i~~~l~~~L~s-------- 272 (555)
.+.-... ...++..+.+..+...+.+.-..++++|-... +++++..++..+...|..
T Consensus 217 ~L~Ls~~-------------~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~--t~~~~~evI~~LR~~L~~~~~~~p~~ 281 (1323)
T 3s4w_B 217 SLRLDPN-------------FLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSV--TDTTSLEVIAELRENLNVQQFILPSR 281 (1323)
T ss_dssp HSCCCHH-------------HHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSC--SSTTHHHHHHHHHHHHHCC-------
T ss_pred cCCCCHH-------------HHHHHHHHHHHHhccCChhhhHHHHHHHHHhC--CHhhHHHHHHHHHHHcCccccccchh
Q ss_pred -----------------------CchHH--HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 008746 273 -----------------------ANGAV--VLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH 327 (555)
Q Consensus 273 -----------------------~~~aV--~~eai~~i~~l~~~~~~~~~~~l~~i~~~L~~ll~~~~~~~ry~aL~~l~ 327 (555)
..+++ ++++++.-+...+ .+....++.+.+.+..-.+-+++.+.
T Consensus 282 ~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l~~~k-----------~i~eAwlK~I~~~~~~~~hk~~Dl~v 350 (1323)
T 3s4w_B 282 IQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEK-----------TISEAWFKAIERIESAAEHKSLDVVM 350 (1323)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHCH-----------HHHHHHHHHHHHGGGSTTCCTHHHHH
T ss_pred hhhhhhhhhccccccCCccccccccchHHHHHHHHHHHHhcCh-----------HHHHHHHHHHhCCCcccccchhHHHH
Q ss_pred -HHHhhCCcccccccceeeeccCCcHHHHHHHHHHHHH---ccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 008746 328 -ILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTA---VANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQ 403 (555)
Q Consensus 328 -~l~~~~p~~~~~~~~~f~~~~~dd~~Ir~~aL~iL~~---l~~~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~i~~la~~ 403 (555)
.++...+.....+++.++-..=....+...-++-.+. .+=+..+..|+.-...++++.|+.++.-....-..+=.-
T Consensus 351 Llii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~ 430 (1323)
T 3s4w_B 351 LLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKF 430 (1323)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q ss_pred cCcH--HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCcchHHHHHhhhc--ccCCCchHHHHHHHHH----Hhcc
Q 008746 404 QYDV--NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSIS--SQNVQEPKAKAALIWM----LGEY 475 (555)
Q Consensus 404 ~~~~--~~~i~~ll~ll~~~~~~v~~e~i~~i~~ii~~~~~~~~~~~~~l~~l~--~~~~~~~~~~~~~~wi----iGEy 475 (555)
|.+. ..++..++..+..+++.-++.++.++..+...+|+.-......+..++ .++++..++|...-=+ .|.=
T Consensus 431 fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~ 510 (1323)
T 3s4w_B 431 FDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNAAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQ 510 (1323)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCC
Q ss_pred ccCCCChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 008746 476 SQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKC 512 (555)
Q Consensus 476 ~~~~~~~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl 512 (555)
........+=+..++++-...+....|..-+-.++.+
T Consensus 511 ~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~ 547 (1323)
T 3s4w_B 511 PGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTM 547 (1323)
T ss_dssp SSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHH
No 146
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=42.87 E-value=78 Score=26.59 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 154 ~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
...+.++-+.+..|+.- .+.+..|++. ++.+||.|...|+.+|..+.++
T Consensus 24 ~~ileicD~I~~~~~~~--k~a~rai~Kr-l~~~n~~~ql~AL~LLe~~vkN 72 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGP--KDCLRSIMRR-VNHKDPHVAMQALTLLGACVSN 72 (140)
T ss_dssp HHHHHHHHHHTTSTTHH--HHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCH--HHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHh
Confidence 34555555555555432 4556677777 5888999999999888777654
No 147
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.87 E-value=40 Score=31.08 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=25.4
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhCCcccccc
Q 008746 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASD 340 (555)
Q Consensus 307 L~~ll~~~~~~~ry~aL~~l~~l~~~~p~~~~~~ 340 (555)
|.+-++++++++++.||..+..++.+.+..|...
T Consensus 50 l~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~e 83 (226)
T 3zyq_A 50 IKKKVNDKNPHVALYALEVMESVVKNCGQTVHDE 83 (226)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 3334567899999999999999998876544433
No 148
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=36.42 E-value=2e+02 Score=27.77 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh
Q 008746 484 YILESLTENWEEEPSAEVRLHLLTAVMKCFF 514 (555)
Q Consensus 484 ~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~ 514 (555)
+.+..++..- ..+ +.+|.-+++.+.++|.
T Consensus 161 ~~L~~ly~~~-~~d-~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 161 VVLQNVYERN-NKD-KQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHT-TTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccC-CCC-HHHHHHHHHHHHHHcc
Confidence 4444444432 335 8999999999999885
No 149
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=32.03 E-value=2.3e+02 Score=24.10 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 153 TVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 153 k~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
-...+.++-+.+..++.. .+.+..|++.+...+|+.|+..|+.+|-.+.++
T Consensus 34 w~~~leicD~I~~~~~~~--k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkN 84 (157)
T 1elk_A 34 WALNMEICDIINETEEGP--KDALRAVKKRIVGNKNFHEVMLALTVLETCVKN 84 (157)
T ss_dssp HHHHHHHHHHHHHSSSHH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 344555555555555433 456677777742368999999999988888764
No 150
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=25.80 E-value=4.4e+02 Score=30.78 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Q 008746 483 PYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAA 527 (555)
Q Consensus 483 ~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~~~~~~l~~v 527 (555)
-+++..+=.+|.+. .+||..+-+-+..+...+|.-....++.+
T Consensus 584 lEIlg~LRRcL~Qq--a~VR~~LY~gl~~~v~~n~~l~~~vl~~L 626 (1308)
T 3s51_A 584 LEIIDSLKRSLGQQ--ADIRLMLYDGFYDVLRRNSQLASSIMQTL 626 (1308)
T ss_dssp HHHHHHHHGGGGSC--HHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHcChhhHHHHHHHH
Confidence 46666666666555 99999999999999999985444444433
No 151
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=24.44 E-value=5.4e+02 Score=25.70 Aligned_cols=172 Identities=13% Similarity=0.122 Sum_probs=101.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHhcccCcHHH-----HHHHHHHHhhccc-chhHHHHHHHHHHHHHhCC--CCcch
Q 008746 375 VTELCEYAANVDIPIARESIRAVGKIALQQYDVNA-----IVDRLLQFLEMEK-DYVTAEALVLVKDLLRKYP--QWSHD 446 (555)
Q Consensus 375 v~eL~~y~~~~d~~~~~~~i~~i~~la~~~~~~~~-----~i~~ll~ll~~~~-~~v~~e~i~~i~~ii~~~~--~~~~~ 446 (555)
+..|.+-+.+.|+.=|.-+-..+.++=.+|..... +-+.+.+++-... -.-..|.+..+..|+.... -..+.
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeeh 210 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEH 210 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHH
Confidence 44566666677766555555555555555544221 2244455443321 2344577778888888753 32222
Q ss_pred HHHHHhhhc--ccCCCc-hHHHHHHHHHHhccccCCCC-hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhcCCc-hhH
Q 008746 447 CIAVVGSIS--SQNVQE-PKAKAALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-ETQ 521 (555)
Q Consensus 447 ~~~~l~~l~--~~~~~~-~~~~~~~~wiiGEy~~~~~~-~~~~l~~l~~~~~~e~~~~vr~~~L~a~~Kl~~~~p~-~~~ 521 (555)
. ..+.+.+ ..+... ..-..-+.+++..|.+.-+. +..+++.+++.|.... +.=+...|.-+..+.-..++ +.+
T Consensus 211 k-~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tn-s~KevlFL~Ele~iLe~~~~~~f~ 288 (403)
T 3fga_B 211 K-IFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTH-SPKEVMFLNELEEILDVIEPSEFV 288 (403)
T ss_dssp H-HHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSC-HHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred H-HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHHhCCHHHHH
Confidence 1 1233333 122211 22234566777777666544 6789999999998887 77777888888888765543 333
Q ss_pred HHHH---HHHHHhccCCCcchhhccccccc
Q 008746 522 KVLG---AALAAGLADFHQVVFYGFFPPFS 548 (555)
Q Consensus 522 ~~l~---~vl~~~~~d~d~evq~Ra~~~l~ 548 (555)
.... ..+..|..+.|..|=+||..+++
T Consensus 289 ~i~~~lf~~la~ci~S~hfqVAErAL~~wn 318 (403)
T 3fga_B 289 KIMEPLFRQLAKCVSSPHFQVAERALYYWN 318 (403)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence 3332 34567778899999999987764
No 152
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=23.50 E-value=2.1e+02 Score=24.35 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=35.7
Q ss_pred CCchhHHHHHHHHHHHHhhCCcccccccc----------eeee-ccCCcHHHHHHHHHHHHHccCC
Q 008746 314 GSPEQSYAVLSHLHILVMRAPFIFASDYK----------HFYC-QYNEPSYVKKLKLEMLTAVANE 368 (555)
Q Consensus 314 ~~~~~ry~aL~~l~~l~~~~p~~~~~~~~----------~f~~-~~~dd~~Ir~~aL~iL~~l~~~ 368 (555)
.++++.+.||..+..++.+.+..|...+. .++- ..+.+..||.+.|+++..|+..
T Consensus 66 ~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 66 YNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp CBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 46777888998888888887654433221 1111 1234567888888888888654
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.65 E-value=2.7e+02 Score=25.06 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhCCCcccCCCchHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 008746 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (555)
Q Consensus 154 ~A~lal~kl~~~~p~~~~~~~~~~~l~~lll~d~d~~V~~~a~~~L~~i~~~ 205 (555)
...+.+.-+.+..++.. .+.+..|.+. ++.+||.|...|+.+|..+.+.
T Consensus 24 ~~~leicd~i~~~~~~~--k~a~r~l~kr-l~~~n~~~~l~aL~Lle~~vkN 72 (220)
T 1dvp_A 24 PSILLICDEINQKDVTP--KNAFAAIKKK-MNSPNPHSSCYSLLVLESIVKN 72 (220)
T ss_dssp HHHHHHHHHHHTTSSCH--HHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCcCH--HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhc
Confidence 34556666666555543 4566777777 5889999999999998887764
No 154
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=21.46 E-value=74 Score=26.89 Aligned_cols=38 Identities=13% Similarity=0.032 Sum_probs=26.9
Q ss_pred hhHHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhCCC
Q 008746 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP 168 (555)
Q Consensus 131 ei~~~l~~~i~~~l~d~~~~VRk~A~lal~kl~~~~p~ 168 (555)
+.++.++..+.+.+++++++|+-||+..+-.+.+..++
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~ 82 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS 82 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH
Confidence 44566677777778888888888887777777665544
Done!