Query 008747
Match_columns 555
No_of_seqs 265 out of 2576
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 16:04:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 5E-109 1E-113 835.7 43.5 521 2-555 50-574 (574)
2 KOG1158 NADP/FAD dependent oxi 100.0 5E-100 1E-104 819.1 43.5 543 2-555 95-645 (645)
3 PRK10953 cysJ sulfite reductas 100.0 7.5E-98 2E-102 817.5 56.5 489 2-555 111-600 (600)
4 TIGR01931 cysJ sulfite reducta 100.0 1.8E-95 4E-100 803.1 56.3 488 2-555 108-597 (597)
5 COG0369 CysJ Sulfite reductase 100.0 9.4E-95 2E-99 780.7 47.1 490 2-555 97-587 (587)
6 cd06204 CYPOR NADPH cytochrome 100.0 2.6E-79 5.6E-84 649.9 46.5 394 153-555 3-416 (416)
7 cd06203 methionine_synthase_re 100.0 7.7E-78 1.7E-82 635.6 44.2 381 160-555 2-398 (398)
8 cd06207 CyPoR_like NADPH cytoc 100.0 2.5E-77 5.5E-82 629.6 44.1 378 160-555 2-382 (382)
9 cd06202 Nitric_oxide_synthase 100.0 6.1E-77 1.3E-81 629.8 46.1 386 160-555 2-402 (406)
10 cd06206 bifunctional_CYPOR The 100.0 2.9E-74 6.2E-79 606.8 44.8 375 159-555 1-384 (384)
11 cd06199 SiR Cytochrome p450- l 100.0 1E-71 2.2E-76 581.8 39.2 356 159-555 1-360 (360)
12 PRK06214 sulfite reductase; Pr 100.0 6.4E-71 1.4E-75 592.8 39.9 368 149-555 162-530 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 5.6E-47 1.2E-51 369.2 21.0 216 150-372 3-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 1.3E-38 2.8E-43 329.6 26.2 272 150-555 85-367 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 2.3E-37 5.1E-42 310.4 30.3 218 331-555 47-267 (267)
16 cd06201 SiR_like2 Cytochrome p 100.0 2.7E-33 5.9E-38 284.3 29.8 189 332-555 100-289 (289)
17 cd06200 SiR_like1 Cytochrome p 100.0 2.1E-34 4.6E-39 285.8 20.4 211 317-555 32-245 (245)
18 TIGR03224 benzo_boxA benzoyl-C 100.0 7.2E-33 1.6E-37 293.3 30.0 270 149-555 136-411 (411)
19 PLN03116 ferredoxin--NADP+ red 100.0 1.1E-33 2.4E-38 289.6 20.5 213 331-555 80-307 (307)
20 cd06208 CYPOR_like_FNR These f 100.0 3.8E-33 8.3E-38 283.1 22.0 225 318-555 42-286 (286)
21 PRK05723 flavodoxin; Provision 99.9 1.1E-25 2.4E-30 205.6 11.8 98 2-101 50-150 (151)
22 PRK09004 FMN-binding protein M 99.9 1.8E-24 4E-29 196.9 11.3 97 1-100 48-146 (146)
23 cd00322 FNR_like Ferredoxin re 99.9 3.3E-24 7.1E-29 209.3 12.8 186 317-525 23-213 (223)
24 cd06188 NADH_quinone_reductase 99.9 2.8E-24 6E-29 218.1 11.7 178 332-526 86-272 (283)
25 cd06189 flavin_oxioreductase N 99.9 3.7E-24 8.1E-29 209.7 12.1 183 316-525 25-212 (224)
26 PRK08105 flavodoxin; Provision 99.9 5.1E-24 1.1E-28 194.6 11.6 96 1-100 50-147 (149)
27 PRK08051 fre FMN reductase; Va 99.9 5.6E-24 1.2E-28 209.6 11.8 183 316-525 29-217 (232)
28 PRK10926 ferredoxin-NADP reduc 99.9 1.6E-23 3.4E-28 208.3 15.1 185 318-525 32-228 (248)
29 PRK07609 CDP-6-deoxy-delta-3,4 99.9 5.1E-24 1.1E-28 221.7 11.6 182 317-525 132-320 (339)
30 cd06211 phenol_2-monooxygenase 99.9 1.2E-23 2.6E-28 208.0 13.0 183 317-525 36-226 (238)
31 cd06190 T4MO_e_transfer_like T 99.9 6.6E-24 1.4E-28 209.0 10.6 185 317-525 24-218 (232)
32 cd06195 FNR1 Ferredoxin-NADP+ 99.9 1.4E-23 2.9E-28 208.0 12.3 186 317-527 25-225 (241)
33 PRK05464 Na(+)-translocating N 99.9 1.7E-23 3.8E-28 222.7 12.9 181 330-525 208-395 (409)
34 cd06209 BenDO_FAD_NAD Benzoate 99.9 2.3E-23 4.9E-28 204.6 12.4 179 317-525 31-215 (228)
35 PRK11872 antC anthranilate dio 99.9 2.2E-23 4.7E-28 216.7 12.8 180 317-525 137-323 (340)
36 cd06187 O2ase_reductase_like T 99.9 1.3E-23 2.8E-28 205.7 9.9 182 317-525 24-212 (224)
37 TIGR01941 nqrF NADH:ubiquinone 99.9 3.1E-23 6.6E-28 220.5 13.2 181 330-525 204-391 (405)
38 PRK08345 cytochrome-c3 hydroge 99.9 2.7E-23 5.9E-28 211.2 11.8 180 317-525 38-234 (289)
39 cd06210 MMO_FAD_NAD_binding Me 99.9 1.7E-23 3.8E-28 206.5 9.7 183 317-525 35-223 (236)
40 PRK13289 bifunctional nitric o 99.9 6.4E-23 1.4E-27 218.2 14.7 169 332-525 205-380 (399)
41 PRK10684 HCP oxidoreductase, N 99.9 4.5E-23 9.7E-28 213.9 12.3 183 318-525 38-225 (332)
42 cd06212 monooxygenase_like The 99.9 5.8E-23 1.3E-27 202.3 12.3 183 317-526 30-220 (232)
43 cd06191 FNR_iron_sulfur_bindin 99.9 1.8E-22 4E-27 198.6 14.6 183 318-524 29-218 (231)
44 cd06194 FNR_N-term_Iron_sulfur 99.9 2.3E-22 5E-27 196.7 14.1 183 317-525 24-209 (222)
45 PRK05713 hypothetical protein; 99.9 1.4E-22 2.9E-27 208.4 11.4 176 317-525 119-296 (312)
46 cd06213 oxygenase_e_transfer_s 99.9 1.8E-22 3.9E-27 198.1 11.8 178 318-525 29-215 (227)
47 cd06221 sulfite_reductase_like 99.9 3.1E-22 6.8E-27 199.6 12.3 182 316-526 27-213 (253)
48 cd06184 flavohem_like_fad_nad_ 99.9 1.2E-21 2.7E-26 194.7 14.0 166 331-525 56-231 (247)
49 cd06216 FNR_iron_sulfur_bindin 99.9 1E-21 2.2E-26 194.8 12.8 180 319-526 48-233 (243)
50 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 1.3E-21 2.7E-26 204.8 11.5 187 317-526 33-230 (352)
51 cd06215 FNR_iron_sulfur_bindin 99.9 4.7E-21 1E-25 188.5 14.8 181 317-525 28-219 (231)
52 cd06198 FNR_like_3 NAD(P) bind 99.9 1.1E-21 2.4E-26 191.0 9.9 175 317-525 23-203 (216)
53 cd06218 DHOD_e_trans FAD/NAD b 99.9 2.1E-21 4.6E-26 192.9 11.9 172 317-526 25-203 (246)
54 cd06214 PA_degradation_oxidore 99.9 2.9E-21 6.4E-26 191.2 12.6 185 316-525 32-228 (241)
55 PRK08221 anaerobic sulfite red 99.9 1.5E-21 3.2E-26 195.8 10.5 176 318-525 34-214 (263)
56 cd06196 FNR_like_1 Ferredoxin 99.9 5.3E-21 1.2E-25 186.5 13.8 176 317-525 28-208 (218)
57 cd06217 FNR_iron_sulfur_bindin 99.9 1.7E-21 3.6E-26 192.2 10.0 181 317-525 31-223 (235)
58 PTZ00274 cytochrome b5 reducta 99.8 7.2E-21 1.6E-25 195.3 14.1 167 331-521 102-281 (325)
59 COG1018 Hmp Flavodoxin reducta 99.8 6.1E-21 1.3E-25 190.1 13.0 180 318-527 36-220 (266)
60 cd06183 cyt_b5_reduct_like Cyt 99.8 4.3E-21 9.3E-26 189.0 11.6 182 316-524 28-223 (234)
61 TIGR02911 sulfite_red_B sulfit 99.8 3.8E-21 8.2E-26 192.6 10.7 177 317-525 31-212 (261)
62 cd06185 PDR_like Phthalate dio 99.8 1.2E-20 2.7E-25 182.9 12.2 174 317-526 26-199 (211)
63 PTZ00319 NADH-cytochrome B5 re 99.8 2.6E-20 5.7E-25 190.1 13.8 180 331-525 85-290 (300)
64 cd06197 FNR_like_2 FAD/NAD(P) 99.8 1.5E-20 3.3E-25 183.5 10.2 147 332-524 60-211 (220)
65 COG2871 NqrF Na+-transporting 99.8 2.5E-20 5.4E-25 178.7 10.0 186 331-531 210-402 (410)
66 PRK00054 dihydroorotate dehydr 99.8 2.3E-20 4.9E-25 186.0 10.0 166 317-525 32-203 (250)
67 COG0543 UbiB 2-polyprenylpheno 99.8 5.6E-20 1.2E-24 182.9 12.3 179 316-526 35-215 (252)
68 cd06220 DHOD_e_trans_like2 FAD 99.8 4.3E-20 9.3E-25 182.1 10.9 166 316-526 23-190 (233)
69 cd06192 DHOD_e_trans_like FAD/ 99.8 9.1E-20 2E-24 180.9 10.6 172 317-526 25-201 (243)
70 cd06219 DHOD_e_trans_like1 FAD 99.8 9.5E-20 2.1E-24 181.3 9.6 171 317-524 27-201 (248)
71 PRK06222 ferredoxin-NADP(+) re 99.8 9.2E-20 2E-24 184.6 9.2 172 317-525 28-203 (281)
72 PRK05802 hypothetical protein; 99.8 1.9E-19 4.1E-24 184.8 7.9 169 318-525 96-276 (320)
73 PLN02252 nitrate reductase [NA 99.8 2.2E-18 4.8E-23 196.7 13.2 191 317-525 665-878 (888)
74 KOG0534 NADH-cytochrome b-5 re 99.8 6.6E-18 1.4E-22 167.4 14.8 181 317-524 82-275 (286)
75 COG4097 Predicted ferric reduc 99.7 6.9E-18 1.5E-22 168.0 12.1 165 330-526 260-424 (438)
76 PTZ00306 NADH-dependent fumara 99.7 1.8E-17 3.9E-22 196.6 12.8 183 317-525 948-1151(1167)
77 PF00258 Flavodoxin_1: Flavodo 99.7 5.5E-18 1.2E-22 154.1 5.5 92 1-92 47-143 (143)
78 PF00175 NAD_binding_1: Oxidor 99.7 1.8E-17 3.8E-22 143.3 7.9 104 409-520 1-109 (109)
79 PRK12778 putative bifunctional 99.7 3.7E-17 8.1E-22 187.0 10.0 172 317-525 28-203 (752)
80 cd06186 NOX_Duox_like_FAD_NADP 99.7 2.1E-16 4.6E-21 153.1 9.9 169 316-524 24-197 (210)
81 cd06193 siderophore_interactin 99.7 8.2E-17 1.8E-21 158.9 5.5 157 331-524 63-219 (235)
82 PRK12779 putative bifunctional 99.6 8.9E-16 1.9E-20 177.7 12.3 181 317-525 677-869 (944)
83 PRK07308 flavodoxin; Validated 99.6 1.7E-14 3.6E-19 131.8 10.3 91 2-97 51-143 (146)
84 PRK12775 putative trifunctiona 99.6 7.9E-15 1.7E-19 171.2 10.1 170 318-525 29-203 (1006)
85 KOG1160 Fe-S oxidoreductase [E 99.5 4.7E-14 1E-18 142.7 9.7 96 2-102 94-194 (601)
86 PLN02292 ferric-chelate reduct 99.4 6.2E-13 1.3E-17 147.9 11.8 177 318-511 353-546 (702)
87 PRK12359 flavodoxin FldB; Prov 99.4 1.1E-12 2.5E-17 122.1 11.1 97 1-102 47-170 (172)
88 PRK06703 flavodoxin; Provision 99.4 1.2E-12 2.5E-17 120.3 10.8 95 2-101 51-148 (151)
89 PLN02844 oxidoreductase/ferric 99.4 1.4E-12 3E-17 145.5 12.0 185 316-514 338-538 (722)
90 PLN02631 ferric-chelate reduct 99.4 1.3E-12 2.8E-17 145.0 9.2 148 316-479 334-492 (699)
91 PRK09271 flavodoxin; Provision 99.2 6.3E-11 1.4E-15 109.9 9.9 89 2-100 54-147 (160)
92 TIGR01752 flav_long flavodoxin 99.2 9.1E-11 2E-15 109.6 10.6 70 1-75 46-117 (167)
93 TIGR01754 flav_RNR ribonucleot 99.2 1E-10 2.2E-15 106.0 8.9 82 2-96 53-139 (140)
94 TIGR01753 flav_short flavodoxi 99.1 1.7E-10 3.7E-15 104.1 9.3 89 1-95 47-138 (140)
95 COG0716 FldA Flavodoxins [Ener 99.1 4E-10 8.7E-15 103.4 10.5 93 2-99 51-150 (151)
96 PRK06756 flavodoxin; Provision 99.1 4.2E-10 9E-15 103.0 9.9 92 1-98 51-145 (148)
97 TIGR00333 nrdI ribonucleoside- 99.0 4.7E-10 1E-14 98.6 7.3 54 4-67 39-93 (125)
98 PRK09267 flavodoxin FldA; Vali 98.9 1.6E-08 3.4E-13 94.7 10.6 95 1-100 48-167 (169)
99 KOG3378 Globins and related he 98.9 1.1E-09 2.3E-14 105.4 2.6 180 317-529 181-372 (385)
100 PF08030 NAD_binding_6: Ferric 98.7 3.9E-08 8.5E-13 90.4 7.0 72 406-477 3-77 (156)
101 PRK03600 nrdI ribonucleotide r 98.6 9.8E-08 2.1E-12 85.3 7.0 82 2-98 41-130 (134)
102 PRK02551 flavoprotein NrdI; Pr 98.4 4.9E-07 1.1E-11 82.4 5.7 81 3-95 57-145 (154)
103 KOG0039 Ferric reductase, NADH 98.2 1.6E-05 3.5E-10 89.3 12.9 193 319-527 384-633 (646)
104 PRK11921 metallo-beta-lactamas 97.9 3E-05 6.5E-10 82.5 7.6 88 2-99 303-392 (394)
105 PRK06567 putative bifunctional 97.8 3E-05 6.5E-10 89.1 7.6 81 318-418 820-907 (1028)
106 PRK05452 anaerobic nitric oxid 97.4 0.0004 8.6E-09 75.7 7.5 89 2-101 307-397 (479)
107 PF07972 Flavodoxin_NdrI: NrdI 97.3 0.00036 7.9E-09 61.1 5.2 74 3-91 41-119 (122)
108 PRK05568 flavodoxin; Provision 97.2 0.0014 3E-08 59.1 8.1 65 1-75 50-116 (142)
109 PF00970 FAD_binding_6: Oxidor 97.1 0.00013 2.8E-09 61.6 0.3 67 316-398 29-98 (99)
110 PRK05569 flavodoxin; Provision 96.9 0.0035 7.5E-08 56.5 7.7 67 1-75 50-117 (141)
111 PRK06242 flavodoxin; Provision 96.7 0.0058 1.3E-07 55.6 7.3 64 1-75 45-108 (150)
112 COG1780 NrdI Protein involved 96.5 0.0078 1.7E-07 53.0 6.9 84 3-101 43-134 (141)
113 PRK07116 flavodoxin; Provision 94.4 0.15 3.3E-06 47.0 7.5 80 1-96 78-158 (160)
114 TIGR01755 flav_wrbA NAD(P)H:qu 94.2 0.16 3.5E-06 48.6 7.6 70 2-73 71-140 (197)
115 PRK03767 NAD(P)H:quinone oxido 93.5 0.26 5.6E-06 47.3 7.6 71 1-73 71-141 (200)
116 COG2375 ViuB Siderophore-inter 92.6 0.76 1.7E-05 45.7 9.4 171 330-543 85-259 (265)
117 KOG0560 Sulfite reductase (fer 92.4 0.052 1.1E-06 57.1 1.1 63 43-105 1-71 (638)
118 TIGR03567 FMN_reduc_SsuE FMN r 89.6 2.3 4.9E-05 39.6 9.1 67 1-74 67-133 (171)
119 PF03358 FMN_red: NADPH-depend 89.3 1.1 2.4E-05 40.5 6.6 69 1-73 72-140 (152)
120 PRK10569 NAD(P)H-dependent FMN 89.2 3.1 6.8E-05 39.5 9.9 66 1-73 68-133 (191)
121 PRK11104 hemG protoporphyrinog 87.2 0.92 2E-05 42.6 4.8 40 1-47 48-87 (177)
122 TIGR03566 FMN_reduc_MsuE FMN r 81.7 11 0.00025 34.9 9.5 66 1-73 70-135 (174)
123 PF12724 Flavodoxin_5: Flavodo 81.0 4.8 0.0001 36.2 6.5 42 1-49 45-86 (143)
124 PRK13556 azoreductase; Provisi 80.6 15 0.00033 35.2 10.2 98 1-100 91-201 (208)
125 PRK00170 azoreductase; Reviewe 75.6 21 0.00046 33.7 9.6 98 1-100 88-195 (201)
126 PLN03116 ferredoxin--NADP+ red 75.5 6.4 0.00014 40.3 6.3 49 152-201 21-69 (307)
127 PRK09739 hypothetical protein; 74.3 25 0.00055 33.3 9.8 101 1-102 81-196 (199)
128 cd06208 CYPOR_like_FNR These f 72.2 8.7 0.00019 38.9 6.3 48 152-200 5-52 (286)
129 PF12682 Flavodoxin_4: Flavodo 71.9 12 0.00027 34.2 6.6 81 1-96 75-156 (156)
130 PF02525 Flavodoxin_2: Flavodo 70.3 30 0.00066 32.7 9.2 99 1-100 80-199 (199)
131 PF08022 FAD_binding_8: FAD-bi 68.9 1.6 3.4E-05 37.2 0.0 60 305-377 16-82 (105)
132 PRK01355 azoreductase; Reviewe 67.6 41 0.00089 32.0 9.5 101 1-102 79-194 (199)
133 KOG1160 Fe-S oxidoreductase [E 65.2 7.6 0.00016 41.1 4.0 73 3-75 410-487 (601)
134 PF12641 Flavodoxin_3: Flavodo 51.4 44 0.00095 30.8 6.3 55 2-67 42-98 (160)
135 PRK13555 azoreductase; Provisi 50.8 1.6E+02 0.0035 28.3 10.3 72 1-73 91-175 (208)
136 TIGR02667 moaB_proteo molybden 49.4 15 0.00033 33.9 2.9 57 36-92 2-58 (163)
137 PF00970 FAD_binding_6: Oxidor 47.1 52 0.0011 26.9 5.7 38 158-200 2-41 (99)
138 TIGR02690 resist_ArsH arsenica 45.1 81 0.0018 30.7 7.3 69 2-73 93-161 (219)
139 PF08021 FAD_binding_9: Sidero 44.5 13 0.00027 32.4 1.5 53 330-397 65-117 (117)
140 PRK04930 glutathione-regulated 43.4 2.9E+02 0.0063 26.1 11.0 102 1-103 63-178 (184)
141 cd06200 SiR_like1 Cytochrome p 41.2 51 0.0011 32.4 5.5 36 166-201 8-44 (245)
142 COG0655 WrbA Multimeric flavod 40.5 63 0.0014 30.9 5.8 69 2-72 78-147 (207)
143 PF04703 FaeA: FaeA-like prote 37.5 71 0.0015 24.4 4.4 25 528-552 23-47 (62)
144 cd00758 MoCF_BD MoCF_BD: molyb 33.4 30 0.00065 30.6 2.2 53 40-92 1-55 (133)
145 COG3937 Uncharacterized conser 33.3 33 0.00072 29.1 2.2 38 512-549 19-56 (108)
146 cd06212 monooxygenase_like The 32.9 90 0.0019 30.1 5.6 40 157-201 2-42 (232)
147 PRK06934 flavodoxin; Provision 31.9 2E+02 0.0043 28.0 7.7 81 1-96 131-217 (221)
148 COG0426 FpaA Uncharacterized f 31.7 1.4E+02 0.0031 31.6 7.1 63 2-75 300-363 (388)
149 cd06217 FNR_iron_sulfur_bindin 31.5 94 0.002 29.9 5.5 40 157-201 3-43 (235)
150 PF03445 DUF294: Putative nucl 30.5 1.8E+02 0.0039 25.9 6.7 61 37-101 46-133 (138)
151 cd01075 NAD_bind_Leu_Phe_Val_D 30.3 72 0.0016 30.4 4.4 33 33-73 23-55 (200)
152 PF11132 SplA: Transcriptional 27.9 46 0.00099 26.2 2.0 16 188-203 5-20 (75)
153 COG0279 GmhA Phosphoheptose is 27.5 80 0.0017 29.3 3.8 25 487-511 26-50 (176)
154 TIGR00106 uncharacterized prot 27.2 1.3E+02 0.0028 25.2 4.8 54 37-90 31-87 (97)
155 PRK00054 dihydroorotate dehydr 26.9 1.4E+02 0.003 29.3 5.8 41 156-202 5-45 (250)
156 cd00886 MogA_MoaB MogA_MoaB fa 26.7 59 0.0013 29.5 2.9 54 39-92 1-56 (152)
157 PF02826 2-Hacid_dh_C: D-isome 25.7 72 0.0016 29.6 3.4 34 32-73 30-63 (178)
158 PRK00871 glutathione-regulated 25.5 4.7E+02 0.01 24.4 8.8 100 1-101 57-168 (176)
159 cd06211 phenol_2-monooxygenase 25.4 1.5E+02 0.0033 28.6 5.9 42 155-201 6-48 (238)
160 cd06196 FNR_like_1 Ferredoxin 25.1 1.3E+02 0.0028 28.6 5.2 40 157-202 2-41 (218)
161 PRK15438 erythronate-4-phospha 25.0 1.5E+02 0.0032 31.5 5.9 32 34-73 112-143 (378)
162 cd06209 BenDO_FAD_NAD Benzoate 25.0 1.6E+02 0.0035 28.2 5.9 40 157-201 3-43 (228)
163 TIGR00177 molyb_syn molybdenum 24.9 46 0.00099 29.9 1.8 53 40-92 2-63 (144)
164 cd05211 NAD_bind_Glu_Leu_Phe_V 24.7 70 0.0015 31.0 3.2 32 34-73 19-50 (217)
165 cd06184 flavohem_like_fad_nad_ 24.2 2.1E+02 0.0045 27.8 6.5 42 156-202 7-50 (247)
166 KOG4723 Uncharacterized conser 23.7 95 0.0021 29.8 3.6 114 436-555 18-139 (248)
167 cd06213 oxygenase_e_transfer_s 23.3 1.7E+02 0.0036 28.1 5.6 39 157-201 2-40 (227)
168 COG0431 Predicted flavoprotein 22.9 2.4E+02 0.0051 26.4 6.3 65 2-73 70-134 (184)
169 cd06214 PA_degradation_oxidore 22.8 1.2E+02 0.0026 29.3 4.5 39 157-200 3-44 (241)
170 PRK06928 pyrroline-5-carboxyla 22.1 1.4E+02 0.0029 30.0 4.8 42 504-545 168-209 (277)
171 PF13580 SIS_2: SIS domain; PD 22.0 1.3E+02 0.0029 26.6 4.2 36 488-524 21-56 (138)
172 KOG3363 Uncharacterized conser 22.0 1.3E+02 0.0029 27.6 4.0 49 503-552 114-166 (196)
173 PF06753 Bradykinin: Bradykini 21.6 31 0.00067 19.3 -0.0 10 414-423 6-15 (19)
174 KOG0025 Zn2+-binding dehydroge 21.5 60 0.0013 33.0 2.0 60 189-259 99-160 (354)
175 cd06189 flavin_oxioreductase N 21.4 1.6E+02 0.0035 28.1 5.1 37 159-201 2-38 (224)
176 cd05191 NAD_bind_amino_acid_DH 20.4 2.3E+02 0.0049 22.7 4.9 45 21-73 5-50 (86)
177 PF14748 P5CR_dimer: Pyrroline 20.2 1.2E+02 0.0026 25.8 3.3 38 507-545 12-49 (107)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=4.5e-109 Score=835.74 Aligned_cols=521 Identities=32% Similarity=0.591 Sum_probs=450.5
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 81 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~d~ 81 (555)
.|||||||+|+|+.|+||++||++|.+.+.+.+.|++++|||||||||+|++||.++|++++||.+|||+.++++|+||+
T Consensus 50 ~vvFVcSTTGqGe~P~Nmk~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDd 129 (574)
T KOG1159|consen 50 LVVFVCSTTGQGEEPDNMKKFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDD 129 (574)
T ss_pred eEEEEEecCCCCCCCccHHHHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CchhhHHHHHHHHHHHHHhhhCCCCCCCCcCCCccccccceEEEEecCCCccccccccCCCCCCcccCCCCCeeeE
Q 008747 82 DQ--CIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSN 159 (555)
Q Consensus 82 ~~--~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
+. |.+.+|.+|...+|+.|....++..+.....++ ......+++-....+ ...+. .......+....++
T Consensus 130 Qh~~G~eg~~~pW~~~lw~~L~~i~~p~~~~t~l~~~-~~~~~k~~~l~~~~~------~~~~d--~~~v~~~~~~~~~k 200 (574)
T KOG1159|consen 130 QHEEGIEGVFDPWLKELWSYLKGIYPPYRPETDLIPT-VQITTKYSLLELGKA------SDFSD--SDIVLEPQGQIPAK 200 (574)
T ss_pred cccccchhhhHHHHHHHHHHHHhhcCCCCCcccCCCc-ccccchhhhhhcccc------ccCCc--chhhhccccccccc
Confidence 64 899999999999999999987632111011111 111222222111111 00100 00011111112378
Q ss_pred EEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCCC
Q 008747 160 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 239 (555)
Q Consensus 160 v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~~~~V~~~l~~l~l~~~~~~~i~~~~~~~~~~~~~~~~ 239 (555)
++.|+++|+.+|+++|+|++|++.++...|+|||++.|+|.|+++.|+++++.+||++++...+.....+ .+...|
T Consensus 201 ~~~N~rlT~~~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~----~~~~~~ 276 (574)
T KOG1159|consen 201 LVENRRLTSADHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSND----RSSPLP 276 (574)
T ss_pred hhcceeecCcchhheeeEEEEecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCc----cccccc
Confidence 9999999999999999999999999899999999999999999999999999999999876655432211 112222
Q ss_pred CCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 008747 240 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPP 318 (555)
Q Consensus 240 ~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~f~s~~~p 318 (555)
-+| |+|+++++++|+|+++.|+++||..|+.|++|++||++|++++|++|.++|.+|+.+++||++|+|++|++.++|
T Consensus 277 -~~~~p~sl~~~lk~~~D~~SvPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp 355 (574)
T KOG1159|consen 277 -LLPNPLSLLNLLKYVLDFNSVPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLP 355 (574)
T ss_pred -ccCCchhHHHHHHHhcccccCcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCC
Confidence 467 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCCCC
Q 008747 319 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK 398 (555)
Q Consensus 319 ~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~F~ 398 (555)
++++++.+ |.++||+|||||+|..+ .++|+|++|.++|.....|.|+||+||.++.+++ .+++.+++|++.
T Consensus 356 ~~yl~d~~-P~IrPR~fSIas~~~~~--~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~------~i~~~v~~g~l~ 426 (574)
T KOG1159|consen 356 IDYLLDLL-PVIRPRAFSIASSPGAH--HLELLVAIVEYKTILKEPRRGLCSNWLASLKPGD------EIPIKVRPGTLY 426 (574)
T ss_pred HHHHHHhc-cccccceeeeccCCCCC--ceeEEEEEEEEeeeccccccchhHHHHhhcCCCC------eEEEEEecCccc
Confidence 99999765 99999999999999854 4999999999999999999999999999998865 378999999999
Q ss_pred CCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCC
Q 008747 399 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 478 (555)
Q Consensus 399 lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~ 478 (555)
+|.+.+.|+||||+|||||||||++++|..++. .+..||||||+++.||+|.+||.+..+.+. +.|||||+
T Consensus 427 ~p~~~~~PlImVGPGTGvAPfRa~i~er~~q~~-----~~~~lFfGCR~K~~Df~y~~eW~~~~~~~~----~~AFSRDq 497 (574)
T KOG1159|consen 427 FPSDLNKPLIMVGPGTGVAPFRALIQERIYQGD-----KENVLFFGCRNKDKDFLYEDEWTELNKRAF----HTAFSRDQ 497 (574)
T ss_pred cCCCCCCCeEEEcCCCCcccHHHHHHHHHhhcc-----CCceEEEecccCCccccccchhhhhhcchh----hhhccccc
Confidence 999889999999999999999999999987432 456999999999999999999998887654 45999999
Q ss_pred CCcccccchhhccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCEEEeeC
Q 008747 479 PTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 555 (555)
Q Consensus 479 ~~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (555)
++|.||||.|+++++.+|+++ +.++.|||||++..|..+|.++|.+|+.+.++.+.|.|. |++.|++.+||+.|+|
T Consensus 498 e~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 498 EQKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred ccceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 999999999999999999988 589999999999999999999999999999999887777 9999999999999999
No 2
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4.5e-100 Score=819.10 Aligned_cols=543 Identities=47% Similarity=0.793 Sum_probs=463.2
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 81 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~d~ 81 (555)
.++|+.+|||+|+||||+..|++||...... ....++|+|||+|++.|++||++|+.+|++|+++||+|++.+|.||+
T Consensus 95 l~~~~~at~g~gd~~dn~~~f~~~l~~~~~~--~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd 172 (645)
T KOG1158|consen 95 LLVVVLATYGEGDPPDNAEAFYQSLTELKVL--PSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDD 172 (645)
T ss_pred eeeeeeehhcCCCCCccHHHHHHHHhhccCc--hhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 5789999999999999999999999987532 34558999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhCCCCCCCCcCCCccccccceEEEEecCCCccccccc--cCCCCCCcccCCCCCeeeE
Q 008747 82 DQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKS--WGNANGHAVYDAQHPCRSN 159 (555)
Q Consensus 82 ~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 159 (555)
+.+.+++|..|++.+|+++.+.+..+... ..+.......++............... ........+.+..+|+.+.
T Consensus 173 ~~~~e~~f~~w~~~~~~~~~~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (645)
T KOG1158|consen 173 DAGLEEDFRTWKKPLLPELCETFSLEEDE---ATKEDETIRQYRTWTPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPAL 249 (645)
T ss_pred cccchhHHHHHHHHHhHhhhheeeecccc---ccCCcccccccccCcCccccccccccCccccccccCCcchhcccchhh
Confidence 99999999999999999999887543211 001000111111100000000000000 0011112344567888899
Q ss_pred EEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCCC
Q 008747 160 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 239 (555)
Q Consensus 160 v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~~~~V~~~l~~l~l~~~~~~~i~~~~~~~~~~~~~~~~ 239 (555)
++.++.|..+.+.+.++|++++..+.+++|+||||++|+|+|+++.|+.++++|+++++..+.++......+.......+
T Consensus 250 ~~~~~~l~~~~~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (645)
T KOG1158|consen 250 VVVNLALSTPSSDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKKP 329 (645)
T ss_pred hhHHhhccCCCCceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCccccC
Confidence 99999999888999999999999888999999999999999999999999999999887666555433221111234567
Q ss_pred CCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 008747 240 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPP 318 (555)
Q Consensus 240 ~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~f~s~~~p 318 (555)
+|+| |+|++++|+||+||+++|++.+|+.||+||+|+.||++|+.|+|++|..+|..++....++++|||..||++++|
T Consensus 330 ~p~~~~~t~~~~l~~~ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP 409 (645)
T KOG1158|consen 330 HPFPLPTTLRTALTHYLDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPP 409 (645)
T ss_pred CCCCCCCcHHHHHHHhccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCCC
Confidence 7888 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCC-CeeccccchhhhccCCCCcCCCCceeeEEEecCCC
Q 008747 319 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF 397 (555)
Q Consensus 319 ~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g-~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~F 397 (555)
+.++++.+ |.++||+|||||||..+++++++++.++.+.+++| +.++|+||+||.++.+++... .++.++.+.|
T Consensus 410 ~~~ll~~l-p~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~----~~~~~~~s~f 484 (645)
T KOG1158|consen 410 LPHLLELL-PRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVP----NPVPVGKSMF 484 (645)
T ss_pred HHHHHHhC-ccccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccC----cceeecccce
Confidence 99999765 99999999999999999999999999998888886 778899999999998876541 1366678999
Q ss_pred CCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcC--CCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEc
Q 008747 398 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA--ELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 475 (555)
Q Consensus 398 ~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~--~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~S 475 (555)
++|.|+.+|+||||+||||||||||+|+|...++.+. ..+ +|||||||+++.|+||++||+++.+.+.++++.+|||
T Consensus 485 rlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~S 563 (645)
T KOG1158|consen 485 RLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFS 563 (645)
T ss_pred ecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeee
Confidence 9999999999999999999999999999998876542 234 8999999999999999999999999999999999999
Q ss_pred cCC-CCcccccchhhccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCEEEe
Q 008747 476 REG-PTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRD 553 (555)
Q Consensus 476 r~~-~~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~d 553 (555)
|++ ++|.||||+|++++++||++| +++++|||||++.+|+++|.++|.+|+++.++++.++|.+++++|++++||++|
T Consensus 564 Req~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~D 643 (645)
T KOG1158|consen 564 REQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYIED 643 (645)
T ss_pred ccCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccccc
Confidence 998 789999999999999999998 569999999997779999999999999999999999999999999999999999
Q ss_pred eC
Q 008747 554 VW 555 (555)
Q Consensus 554 vw 555 (555)
||
T Consensus 644 Vw 645 (645)
T KOG1158|consen 644 VW 645 (645)
T ss_pred cC
Confidence 99
No 3
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=7.5e-98 Score=817.50 Aligned_cols=489 Identities=30% Similarity=0.527 Sum_probs=420.6
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 81 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~d~ 81 (555)
.+||||||||+|||||||+.||+||.... ...|++++|||||||||+|++||+++|++|++|+++||+|+++++.+|
T Consensus 111 ~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~--~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D- 187 (600)
T PRK10953 111 LLIVVTSTQGEGEPPEEAVALHKFLFSKK--APKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDAD- 187 (600)
T ss_pred eEEEEECCCCCCCCChhHHHHHHHHhhCc--CcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeecccccc-
Confidence 58999999999999999999999998653 235999999999999999999999999999999999999999998665
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhCCCCCCCCcCCCccccccceEEEEecCCCccccccccCCCCCCcccCCCCCeeeEEE
Q 008747 82 DQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVA 161 (555)
Q Consensus 82 ~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (555)
.+++++|++|++.+|++|...+..... ..... .. .... . .....++..+|+.++|+
T Consensus 188 -~~~e~~~~~W~~~~~~~l~~~~~~~~~----~~~~~-----~~----~~~~----~------~~~~~~~~~~p~~a~v~ 243 (600)
T PRK10953 188 -VEYQAAASEWRARVVDALKSRAPAVAA----PSQSV-----AT----GAVN----E------IHTSPYSKEAPLTASLS 243 (600)
T ss_pred -cccHHHHHHHHHHHHHHHHhhcCCccc----ccccc-----cc----cccc----c------cccCCCCCCCCeEEEEE
Confidence 458899999999999999876532110 00000 00 0000 0 00113456789999999
Q ss_pred eeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCCCCC
Q 008747 162 VRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 241 (555)
Q Consensus 162 ~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~~~~V~~~l~~l~l~~~~~~~i~~~~~~~~~~~~~~~~~~ 241 (555)
.|++||.++++++|+||+|++.+++++|+|||+|+|||+|+++.|+++|++||+++++.+++..
T Consensus 244 ~n~~Lt~~~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~---------------- 307 (600)
T PRK10953 244 VNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDG---------------- 307 (600)
T ss_pred EEeecCCCCCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCC----------------
Confidence 9999999999999999999998889999999999999999999999999999999998876641
Q ss_pred CCcchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHH
Q 008747 242 FPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGV 321 (555)
Q Consensus 242 ~p~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~f~s~~~p~~~ 321 (555)
.++|++++|++|+||+.+ ++.+|+.++.++.++. |+++.. +++.+.+|.. +++++|||++|| +++++++
T Consensus 308 -~~~tl~~~l~~~~dl~~~-~~~~l~~~a~~~~~~~----l~~~~~--~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q 376 (600)
T PRK10953 308 -KTLPLAEALQWHFELTVN-TANIVENYATLTRSET----LLPLVG--DKAALQHYAA--TTPIVDMVRFAP-AQLDAEQ 376 (600)
T ss_pred -CCCCHHHHHHHhcccCCC-cHHHHHHHHHhCCCHH----HHHHhc--CHHHHHHHhc--CCCHHHHHHhCC-CCCCHHH
Confidence 146899999999999975 7789999999998754 333432 5566777763 689999999998 6899999
Q ss_pred HHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEec-CCCCCC
Q 008747 322 FFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ-SNFKLP 400 (555)
Q Consensus 322 ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~-~~F~lp 400 (555)
|++++ |+++||+|||||+|...+++++|+|+++.+. ..|+.+.|+||+||.+..+.|+ .++|+++. +.|++|
T Consensus 377 ~l~ll-~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~-~~g~~~~G~~S~~L~~~l~~Gd-----~v~v~~~~~~~F~lp 449 (600)
T PRK10953 377 LIGLL-RPLTPRLYSIASSQAEVENEVHITVGVVRYD-IEGRARAGGASSFLADRLEEEG-----EVRVFIEHNDNFRLP 449 (600)
T ss_pred HHHhC-CCCCCeeeecccCCCCCCCeEEEEEEEEEee-cCCCCcCceEhhhhhhcCCCCC-----EEEEEeccCCcccCC
Confidence 99765 9999999999999987789999999988665 3577889999999997444333 47888865 689999
Q ss_pred CCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCCCC
Q 008747 401 ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT 480 (555)
Q Consensus 401 ~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~ 480 (555)
.++.+|+||||+||||||||||++++..... .+++|||||||++..|++|++||++|.+.|.++++++||||++.+
T Consensus 450 ~~~~~piImIg~GTGIAPfrsflq~r~~~~~----~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~ 525 (600)
T PRK10953 450 ANPETPVIMIGPGTGIAPFRAFMQQRAADGA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKE 525 (600)
T ss_pred CCCCCCEEEEecCcCcHHHHHHHHHHHHcCC----CCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCCC
Confidence 8888999999999999999999999876432 378999999999777999999999999999999999999999888
Q ss_pred cccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCEEEeeC
Q 008747 481 KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 555 (555)
Q Consensus 481 k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (555)
|+||||+|.++.+++|+++.++++|||||++..|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 526 k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 526 KIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred CCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 999999999999999999988999999999778999999999999999999999999999999999999999999
No 4
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=1.8e-95 Score=803.13 Aligned_cols=488 Identities=34% Similarity=0.608 Sum_probs=421.3
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 81 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~d~ 81 (555)
.+||||||||+|+||+||..||+||++.. ...|++++||||||||++|++||+++|++|++|+++||++++|++.+|.
T Consensus 108 ~li~v~ST~GeGe~Pdna~~F~~~L~~~~--~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~ 185 (597)
T TIGR01931 108 LLLLVISTQGEGEPPEEAISFHKFLHSKK--APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADL 185 (597)
T ss_pred eEEEEeCCCCCCcCCHHHHHHHHHHHhCC--CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCcc
Confidence 58999999999999999999999998653 2359999999999999999999999999999999999999999987764
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhCCCCCCCCcCCCccccccceEEEEecCCCccccccccCCCCCCcccCCCCCeeeEEE
Q 008747 82 DQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVA 161 (555)
Q Consensus 82 ~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (555)
+.+++|++|++++|++|...+.... ..+ .+.+. .... ......++..+|+.++|+
T Consensus 186 --~~e~~~~~W~~~~~~~l~~~~~~~~-----~~~------~~~~~--~~~~----------~~~~~~~~~~~p~~a~v~ 240 (597)
T TIGR01931 186 --DYDANAAEWRAGVLTALNEQAKGSA-----STP------SLSET--PARS----------QTATSVYSKQNPFRAEVL 240 (597)
T ss_pred --ChHHHHHHHHHHHHHHHHhhccCcc-----CCC------cceec--cccc----------ccccCCccCCCCeEEEEE
Confidence 5889999999999999987653210 000 01100 0000 001123456789999999
Q ss_pred eeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCCCCC
Q 008747 162 VRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 241 (555)
Q Consensus 162 ~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~~~~V~~~l~~l~l~~~~~~~i~~~~~~~~~~~~~~~~~~ 241 (555)
.|++||.++++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++|++++++.+++. +
T Consensus 241 ~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~-----~----------- 304 (597)
T TIGR01931 241 ENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG-----G----------- 304 (597)
T ss_pred eeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC-----C-----------
Confidence 999999999999999999999988999999999999999999999999999999999887663 1
Q ss_pred CCcchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHH
Q 008747 242 FPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGV 321 (555)
Q Consensus 242 ~p~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~f~s~~~p~~~ 321 (555)
+++|++++|++|+||+. +++.+|+.||.+++|++.++.| + +++.|.+|+. +++++|||.+|| ++++++|
T Consensus 305 -~~~tl~~~l~~~~dl~~-~~~~~l~~la~~~~~~~l~~~~----~--~~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq 373 (597)
T TIGR01931 305 -KTIPLFEALITHFELTQ-NTKPLLKAYAELTGNKELKALI----A--DNEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQ 373 (597)
T ss_pred -CCcCHHHHHHhceeCCC-CCHHHHHHHHHhcCCHHHHHHh----c--CHHHHHHHHc--CCCHHHHHHHCC-CCCCHHH
Confidence 15799999999999998 5899999999999998655433 2 5677888875 789999999999 8999999
Q ss_pred HHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEEe-cCCCCC
Q 008747 322 FFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR-QSNFKL 399 (555)
Q Consensus 322 ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~-~~~F~l 399 (555)
|++++ |+++||+|||||+|..++++++|+|++|.+. ..|+.+.|.||+||.+ +.+|+ .++|+++ ++.|++
T Consensus 374 ~v~ll-~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~-~~~~~~~G~~S~~L~~~l~~Gd------~v~v~~~~~~~F~l 445 (597)
T TIGR01931 374 LISLL-RPLTPRLYSISSSQSEVGDEVHLTVGVVRYQ-AHGRARLGGASGFLAERLKEGD------TVPVYIEPNDNFRL 445 (597)
T ss_pred HHHhC-cccCCceeeeccCcccCCCEEEEEEEEEEec-CCCCccccchhHHHHhhCCCCC------EEEEEEeeCCcccC
Confidence 99764 8899999999999987788999999988664 4678889999999998 54443 4778876 467999
Q ss_pred CCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCCC
Q 008747 400 PADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP 479 (555)
Q Consensus 400 p~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~ 479 (555)
|.++.+|+||||+||||||||||++++..... .++++||||||+...|++|++||+++.+.+.++++++||||++.
T Consensus 446 p~~~~~piImIg~GTGIAPfrsflq~r~~~~~----~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSRd~~ 521 (597)
T TIGR01931 446 PEDPDTPIIMIGPGTGVAPFRAFMQERAEDGA----KGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQA 521 (597)
T ss_pred CCCCCCCEEEEcCCcCchhHHHHHHHHHHccC----CCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEecCCC
Confidence 98888999999999999999999999876432 37899999999965699999999999999998889999999877
Q ss_pred CcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCEEEeeC
Q 008747 480 TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 555 (555)
Q Consensus 480 ~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (555)
.++||||+|.++.+.+++++.++++|||||+++.|+++|.++|.+|+.++++++.++|++|+++|+++|||++|||
T Consensus 522 ~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 522 EKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred CCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 8999999999999999998878899999995489999999999999999999999999999999999999999999
No 5
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.4e-95 Score=780.69 Aligned_cols=490 Identities=37% Similarity=0.646 Sum_probs=438.1
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 81 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~d~ 81 (555)
+++||+||+|+|++|+||..||++|... +...|.+++||||||||++|+.||.++|.++++|.++||+++.+++.+|.
T Consensus 97 ~~~~i~st~geGe~p~na~~f~~~l~~~--~a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~ 174 (587)
T COG0369 97 LLLFVVSTQGEGEPPDNAVAFHEFLKGK--KAPKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADV 174 (587)
T ss_pred ceEEEEccccCCCCCCchHHHHHHhccc--ccccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCcccccc
Confidence 6899999999999999999999999976 34569999999999999999999999999999999999999999999888
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhCCCCCCCCcCCCccccccceEEEEecCCCccccccccCCCCCCcccCCCCCeeeEEE
Q 008747 82 DQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVA 161 (555)
Q Consensus 82 ~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (555)
. ++++...+|...+++.+...++..... ...++. .. . . ...+....++.+.+.
T Consensus 175 ~-~~e~~~~~w~~~~~~~l~~~~~~~~~~--~~~~~~-----~~------~------------~-~~~~~~~~~~~a~~~ 227 (587)
T COG0369 175 Q-DFEAAAAPWRDDVLELLKSKFPGQEAA--PAQVAT-----SP------Q------------S-ESPYSKPAPSVAILL 227 (587)
T ss_pred c-ccchhhhHHHHHHHHHHHhhccccccc--cccccc-----hh------c------------c-cccccccCcceeEee
Confidence 6 888899999999999999876432110 000000 00 0 0 112334567789999
Q ss_pred eeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCCCCC
Q 008747 162 VRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 241 (555)
Q Consensus 162 ~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~~~~V~~~l~~l~l~~~~~~~i~~~~~~~~~~~~~~~~~~ 241 (555)
.|++++..+++++++||+|++++.+++|+|||+++|||+|+++.|+++|+.+||+++..+++.
T Consensus 228 ~n~~l~~~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~----------------- 290 (587)
T COG0369 228 ENRKLTGRDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD----------------- 290 (587)
T ss_pred ccccCCccccCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-----------------
Confidence 999999999999999999999988999999999999999999999999999999998666331
Q ss_pred CCcchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHH
Q 008747 242 FPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGV 321 (555)
Q Consensus 242 ~p~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~f~s~~~p~~~ 321 (555)
-+++++.++|++|+|+++.| +.++..|+.|+.+++.++.|..++ ...+..|.. +++++|+|++||++++|+++
T Consensus 291 ~~~~~~~~~l~~~~e~~~~~-~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~ 363 (587)
T COG0369 291 GETLPLVEALKSHFEFTSAP-KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAEE 363 (587)
T ss_pred CCcchHHHHHHHheecccch-HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHHH
Confidence 11679999999999999999 999999999999999999999886 456777665 89999999999999999999
Q ss_pred HHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecC-CCCCC
Q 008747 322 FFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLP 400 (555)
Q Consensus 322 ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~-~F~lp 400 (555)
|++. +|+++||.|||||+|..++++++|||++|.+... ++.+.|+||+||.++.+.++ .++++++.+ +|++|
T Consensus 364 li~~-l~~lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g~-----~i~v~v~~n~nf~lp 436 (587)
T COG0369 364 LIDL-LPPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEGD-----TIPVFVQPNKNFRLP 436 (587)
T ss_pred HHHh-CccCCCeeeEeccCCCCCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCCC-----eEEEEeccCCccccC
Confidence 9976 5999999999999999999999999999988777 45889999999999987443 488999876 89999
Q ss_pred CCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCCCC
Q 008747 401 ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT 480 (555)
Q Consensus 401 ~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~ 480 (555)
.++.+||||||+||||||||||+|+|...+.. +++|||||||+...||||++||++|.+.|.++++..||||++++
T Consensus 437 ~~~~~PiIMIG~GTGIAPFRafvq~r~~~~~~----gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~ 512 (587)
T COG0369 437 EDPETPIIMIGPGTGIAPFRAFVQERAANGAE----GKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEE 512 (587)
T ss_pred CCCCCceEEEcCCCCchhHHHHHHHHHhcccc----CceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCCC
Confidence 99889999999999999999999999876533 58999999999888999999999999999999999999999999
Q ss_pred cccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCEEEeeC
Q 008747 481 KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 555 (555)
Q Consensus 481 k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (555)
|.||||+|++++++||++++++++|||||++..|+++|.++|.+|+.+.++++.|+|.+++++|++++||++|||
T Consensus 513 KiYVQd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 513 KIYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred CccHHHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 999999999999999999998999999997799999999999999999999999999999999999999999999
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=2.6e-79 Score=649.87 Aligned_cols=394 Identities=53% Similarity=0.936 Sum_probs=354.1
Q ss_pred CCCeeeEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCC-CCcEEEEeeCCCCCC
Q 008747 153 QHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS-PDTYFSLHTDKEDGT 231 (555)
Q Consensus 153 ~~~~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~~~~V~~~l~~l~l~-~~~~~~i~~~~~~~~ 231 (555)
.+|+.++|+.|++||.+ ++++++||+||+++.+++|+|||+|+|+|+|+++.|+++|++||++ +++.+.+.....
T Consensus 3 ~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~--- 78 (416)
T cd06204 3 KNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDE--- 78 (416)
T ss_pred CCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCc---
Confidence 46889999999999998 9999999999998778999999999999999999999999999999 899888864321
Q ss_pred CCCCCCCCCCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHh
Q 008747 232 PLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMS 310 (555)
Q Consensus 232 ~~~~~~~~~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~ 310 (555)
....+.|+| |+|++++|++|+||+++|++.+|+.||.||+|+++|++|++|++ +|.++|.+|+.+.+++++|||.
T Consensus 79 ---~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~ 154 (416)
T cd06204 79 ---PASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQ 154 (416)
T ss_pred ---ccccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHH
Confidence 122345788 99999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hCCCCC---CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCc------
Q 008747 311 EFPSAK---PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEK------ 381 (555)
Q Consensus 311 ~f~s~~---~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~------ 381 (555)
+||+++ +|++.|++.+ |+++||+|||||+|..++++++|+|+++.+.++.++.+.|+||+||+++.++..
T Consensus 155 ~f~s~~~~~~pl~~ll~~l-p~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 233 (416)
T cd06204 155 DFPSAKPTPPPFDFLIELL-PRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233 (416)
T ss_pred hCcccCCCCCCHHHHHHhC-ccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccc
Confidence 999999 9999999765 999999999999998788999999999988888889999999999999875110
Q ss_pred ---------CCCCceeeEEEecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCC
Q 008747 382 ---------SNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 452 (555)
Q Consensus 382 ---------~~~~~~v~v~~~~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ 452 (555)
...+..++++++.|.|.+|.+..+|+||||+|||||||+||++++....+.+...++++||||||+++.|+
T Consensus 234 ~~~~~~~~~~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ 313 (416)
T cd06204 234 PYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDF 313 (416)
T ss_pred ccccccccccCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCccc
Confidence 00234588999999999998778999999999999999999999875433233357899999999985599
Q ss_pred CcHHHHHHHHHcCCcceEEEEEccCCCCcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCC
Q 008747 453 IYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 532 (555)
Q Consensus 453 ly~del~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~ 532 (555)
+|++||++|.+.+...+++++|||++..++|||++|.++.+.+++++.++++||||||+..|+++|.++|.+|+++++++
T Consensus 314 ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~ 393 (416)
T cd06204 314 IYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGGM 393 (416)
T ss_pred chHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHHhCCC
Confidence 99999999999887778999999987779999999999888888888778999999994349999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCEEEeeC
Q 008747 533 DSSKAESMVKNLQMTGRYLRDVW 555 (555)
Q Consensus 533 ~~~~a~~~~~~l~~~~Ry~~dvw 555 (555)
++++|++|+++|+++|||++|||
T Consensus 394 ~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 394 TETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred CHHHHHHHHHHHHHcCCeeEecC
Confidence 99999999999999999999999
No 7
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=7.7e-78 Score=635.58 Aligned_cols=381 Identities=39% Similarity=0.710 Sum_probs=340.3
Q ss_pred EEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCC--CCcEEEEeeCCCCCCCCCCCC
Q 008747 160 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLGKST 237 (555)
Q Consensus 160 v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~~~~V~~~l~~l~l~--~~~~~~i~~~~~~~~~~~~~~ 237 (555)
|..+++||+++++++++||+|++.+.++.|+|||+|+|+|+|+++.|++++++||++ ++..++++....... .+..
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKK--KNAK 79 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccc--cccc
Confidence 577899999999999999999998788999999999999999999999999999999 888888864221111 1234
Q ss_pred CCCCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCC
Q 008747 238 LPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAK 316 (555)
Q Consensus 238 ~~~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~f~s~~ 316 (555)
+|.++| |+|++++|++|+||+++|+++||+.||.||+|+++|++|++|++.+|+++|.+|+.+.+++++|||++||+++
T Consensus 80 ~~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~ 159 (398)
T cd06203 80 VPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCR 159 (398)
T ss_pred cCCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCC
Confidence 677888 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccC-----CCCcCCCCceeeEE
Q 008747 317 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL-----PMEKSNDCSWAPIF 391 (555)
Q Consensus 317 ~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~-----~~~~~~~~~~v~v~ 391 (555)
+|++.+++.+ |+++||+|||||+|..+++.++|+|+++.+.+ .|+||+||+++. +|+ .+.+.
T Consensus 160 ~pl~~ll~~l-p~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G~------~v~i~ 226 (398)
T cd06203 160 PPLSLLIEHL-PRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHGV------KVPFY 226 (398)
T ss_pred CCHHHHHHhC-ccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCCC------EEEEE
Confidence 9999999865 99999999999999866789999999875432 599999999987 433 46777
Q ss_pred Ee-cCCCCCCCC-CCCCeEEEccCCccchhHHHHHHHHHHHh--hcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCc
Q 008747 392 VR-QSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQE--AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 467 (555)
Q Consensus 392 ~~-~~~F~lp~~-~~~piimIa~GTGiAPf~s~l~~~~~~~~--~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~ 467 (555)
++ .|.|.+|.+ ..+|+||||+||||||||||++++..... .+...++++||||||+++.|++|++||+++.+.+.+
T Consensus 227 ~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~ 306 (398)
T cd06203 227 LRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGIL 306 (398)
T ss_pred EecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCC
Confidence 75 578999876 67999999999999999999999876421 123357999999999995599999999999999998
Q ss_pred ceEEEEEccCCC---CcccccchhhccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008747 468 SQLIVAFSREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 543 (555)
Q Consensus 468 ~~l~~a~Sr~~~---~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 543 (555)
+++++||||++. .++||||.|.++.+.+++++ ..++.||||||++.|+++|+++|.+|+.+++|++.++|++|+++
T Consensus 307 ~~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~ 386 (398)
T cd06203 307 TRLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLAR 386 (398)
T ss_pred ceEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 889999999876 48999999999999999877 57899999999778999999999999999999999999999999
Q ss_pred HHHCCCEEEeeC
Q 008747 544 LQMTGRYLRDVW 555 (555)
Q Consensus 544 l~~~~Ry~~dvw 555 (555)
|+++|||++|||
T Consensus 387 l~~~gRy~~dvw 398 (398)
T cd06203 387 LRKEDRYLEDVW 398 (398)
T ss_pred HHHcCCeeeecC
Confidence 999999999999
No 8
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=2.5e-77 Score=629.64 Aligned_cols=378 Identities=43% Similarity=0.784 Sum_probs=343.7
Q ss_pred EEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCCC
Q 008747 160 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 239 (555)
Q Consensus 160 v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~~~~V~~~l~~l~l~~~~~~~i~~~~~~~~~~~~~~~~ 239 (555)
|+.|++||+++++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.+++.... +.+.+
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~-------~~~~~ 74 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNE-------QQRGK 74 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEeccc-------ccccC
Confidence 56789999999999999999999878899999999999999999999999999999999998886422 12234
Q ss_pred CCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 008747 240 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPP 318 (555)
Q Consensus 240 ~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~f~s~~~p 318 (555)
.|+| |+|++++|++||||+++|++.+|+.||.||+|+++|++|.+|++.++.+.|.++ .+++++|+|.+||++++|
T Consensus 75 ~~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~ 151 (382)
T cd06207 75 PPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPT 151 (382)
T ss_pred CCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCC
Confidence 5778 999999999999999999999999999999999999999999999999999888 789999999999999999
Q ss_pred hHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCCCC
Q 008747 319 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK 398 (555)
Q Consensus 319 ~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~F~ 398 (555)
++.|++.+ |+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||.++.+|+ .+.+.++.|.|+
T Consensus 152 ~~~ll~~l-p~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~~p~g~F~ 224 (382)
T cd06207 152 LEQLLELC-PLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQ------RVTVFIKKSSFK 224 (382)
T ss_pred HHHHHHhC-cCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCC------EEEEEEECCccc
Confidence 99999865 99999999999999866789999999998888888889999999999876643 478888999999
Q ss_pred CCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCC
Q 008747 399 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 478 (555)
Q Consensus 399 lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~ 478 (555)
+|.+..+|+||||+|||||||+||++++......+...++++||||||+++.|++|++||++|.+.+.+.++++||||++
T Consensus 225 lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~ 304 (382)
T cd06207 225 LPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQ 304 (382)
T ss_pred CCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCC
Confidence 99887899999999999999999999987653333445899999999998559999999999999998889999999998
Q ss_pred CCcccccchhhccHHHHHHHHhCC-CEEEEecCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCEEEeeC
Q 008747 479 PTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 555 (555)
Q Consensus 479 ~~k~yVq~~l~~~~~~v~~~l~~~-~~iyvCG~~~~-M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (555)
..++|||+++.++.+.+++++.++ +.|||||| +. |+++|+++|.+++.+++++++++|++|+++|+++|||++|||
T Consensus 305 ~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~-~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 305 PKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGS-TWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CCceEhHHHHHHCHHHHHHHHhcCCCEEEEECC-cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 789999999999988898887555 49999999 55 999999999999999999999999999999999999999999
No 9
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=6.1e-77 Score=629.82 Aligned_cols=386 Identities=41% Similarity=0.739 Sum_probs=337.5
Q ss_pred EEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeEEEeecCCHHHHHHHHHHcCCC--CCcEEEEeeCCCCCCCCC--
Q 008747 160 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLG-- 234 (555)
Q Consensus 160 v~~~~~l~~~~~~~~~~~i~~~~~~-~~~~y~~GD~i~i~p~N~~~~V~~~l~~l~l~--~~~~~~i~~~~~~~~~~~-- 234 (555)
|+.+++|+.+++.|+|+||+||+++ ++++|+|||+|+|+|+|+++.|+++|++|++. .+..+.++.........+
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGII 81 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCcccccc
Confidence 5778999999999999999999986 68999999999999999999999999999984 467777764322111100
Q ss_pred CCCCCCCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC
Q 008747 235 KSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP 313 (555)
Q Consensus 235 ~~~~~~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~f~ 313 (555)
....++++| |+|++++|++|+||+++|++.+|+.||.||+|+.+|++|++|++ +.+.|.+|+...+++++|||.+||
T Consensus 82 ~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f~ 159 (406)
T cd06202 82 KTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEFP 159 (406)
T ss_pred ccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhCC
Confidence 011223444 89999999999999999999999999999999999999999997 888999999999999999999999
Q ss_pred CCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCC--CCeeccccchhhhccCCCCcCCCCceeeEE
Q 008747 314 SAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 391 (555)
Q Consensus 314 s~~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~--g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 391 (555)
++++|++.|++.+ |+++||+|||||+|..+++.++|+|+++.+.++. |+.+.|+||+||+++.+|+ .+.++
T Consensus 160 s~~~~~~~ll~~l-p~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~ 232 (406)
T cd06202 160 SLQVPASLLLTQL-PLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGD------TVPCF 232 (406)
T ss_pred cCCCCHHHHHHhC-cccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCC------EEEEE
Confidence 9999999999765 9999999999999987789999999998766553 4467899999999887654 36777
Q ss_pred Ee-cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHH----hhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCC
Q 008747 392 VR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ----EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 466 (555)
Q Consensus 392 ~~-~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~----~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~ 466 (555)
++ ++.|++|.+..+|+||||+||||||||||++++.... ..+...++++||||||+++.|++|++||+++.+.+.
T Consensus 233 ~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~ 312 (406)
T cd06202 233 VRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGV 312 (406)
T ss_pred EeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCC
Confidence 76 4579999888899999999999999999999986532 112335899999999999569999999999999999
Q ss_pred cceEEEEEccCCC-CcccccchhhccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008747 467 LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNL 544 (555)
Q Consensus 467 ~~~l~~a~Sr~~~-~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l 544 (555)
++++++||||++. .++|||+.|.++.+.+++++ ..+++|||||| +.|+++|.++|.+|++++++++.++|++|+++|
T Consensus 313 ~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~-~~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~l 391 (406)
T cd06202 313 LTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGD-VTMAEDVSQTIQRILAEHGNMSAEEAEEFILKL 391 (406)
T ss_pred CceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCC-CchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8889999999864 58999999999999999987 67999999999 689999999999999999999999999999999
Q ss_pred HHCCCEEEeeC
Q 008747 545 QMTGRYLRDVW 555 (555)
Q Consensus 545 ~~~~Ry~~dvw 555 (555)
+++|||++|||
T Consensus 392 ~~~gRy~~dvw 402 (406)
T cd06202 392 RDENRYHEDIF 402 (406)
T ss_pred HHcCCeEEEec
Confidence 99999999999
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=2.9e-74 Score=606.83 Aligned_cols=375 Identities=36% Similarity=0.618 Sum_probs=331.8
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCC
Q 008747 159 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 238 (555)
Q Consensus 159 ~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~~~~V~~~l~~l~l~~~~~~~i~~~~~~~~~~~~~~~ 238 (555)
+|+.|++||+++++++++||+|++++ +++|+|||+|+|+|+|+++.|+++|++||+++++.++++.... ..
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~--------~~ 71 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS--------AT 71 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC--------CC
Confidence 46789999999999999999999975 8999999999999999999999999999999999998874221 22
Q ss_pred CCCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCC
Q 008747 239 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKP 317 (555)
Q Consensus 239 ~~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~f~s~~~ 317 (555)
+.|+| |+|++++|++|+||+++|+++||+.||.||+|+++|++|..++ .+.|.+++...+++++|||.+||++++
T Consensus 72 ~~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~ 147 (384)
T cd06206 72 GLPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIAL 147 (384)
T ss_pred CCCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCC
Confidence 34566 8999999999999999999999999999999999999999885 467899999999999999999999999
Q ss_pred ChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCC-CeeccccchhhhccCCCCcCCCCceeeEEE--ec
Q 008747 318 PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFV--RQ 394 (555)
Q Consensus 318 p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g-~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~--~~ 394 (555)
|+++|++.+ |+++||+|||||+|..+++.++|+|+++.+.++.+ +.+.|+||+||.++.+|+ .+.+.+ +.
T Consensus 148 ~~~~~l~~~-p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~i~~p~ 220 (384)
T cd06206 148 PLATFLAML-PPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGD------SIHVSVRPSH 220 (384)
T ss_pred CHHHHHHhC-cccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCC------eEEEEEecCC
Confidence 999999765 99999999999999766789999999887665554 567899999999876654 355554 35
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||+++.|++|++||+++++.+.+ +++++|
T Consensus 221 g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~-~l~~a~ 299 (384)
T cd06206 221 SAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVV-SVRRAY 299 (384)
T ss_pred CccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCCe-EEEEEe
Confidence 7899988778999999999999999999999876533333357899999999995599999999999987766 899999
Q ss_pred ccCCCC-cccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCC
Q 008747 475 SREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQG----SLDSSKAESMVKNLQMTGR 549 (555)
Q Consensus 475 Sr~~~~-k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~~R 549 (555)
||++.. ++|||+.|.++.+.+++++.+++.|||||| +.|+++|.++|.+++.+++ +++.++|++|+++|+++||
T Consensus 300 Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gr 378 (384)
T cd06206 300 SRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGD-GRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGR 378 (384)
T ss_pred cccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECC-CchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCC
Confidence 998654 899999999988888887778899999999 6699999999999999999 9999999999999999999
Q ss_pred EEEeeC
Q 008747 550 YLRDVW 555 (555)
Q Consensus 550 y~~dvw 555 (555)
|++|||
T Consensus 379 y~~dvw 384 (384)
T cd06206 379 YATDVF 384 (384)
T ss_pred eeeecC
Confidence 999999
No 11
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=1e-71 Score=581.85 Aligned_cols=356 Identities=40% Similarity=0.670 Sum_probs=314.8
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCC
Q 008747 159 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 238 (555)
Q Consensus 159 ~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~~~~V~~~l~~l~l~~~~~~~i~~~~~~~~~~~~~~~ 238 (555)
+|+.|++||+++++++++||+|++++++++|+|||+|+|+|+|+++.|++++++||+++++.+++
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~--------------- 65 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST--------------- 65 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC---------------
Confidence 36789999999999999999999988889999999999999999999999999999999876532
Q ss_pred CCCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC--CC
Q 008747 239 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP--SA 315 (555)
Q Consensus 239 ~~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~f~--s~ 315 (555)
+.| ++|++++|++|+||+++ .++.|+.||+++.++++|.. +|++.|.+ +++++|+|++|| ++
T Consensus 66 --~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~ 130 (360)
T cd06199 66 --VGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPA 130 (360)
T ss_pred --CCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCC
Confidence 123 78999999999999987 55568899999888888775 57777764 479999999999 99
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEec-
Q 008747 316 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ- 394 (555)
Q Consensus 316 ~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~- 394 (555)
++|++||++.+ |+++||+|||||+|..++++++|+|+++.+.++ ++.+.|+||+||+++.+.|+ .+.++++.
T Consensus 131 ~~~~gq~l~l~-~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~Gd-----~v~v~~~~~ 203 (360)
T cd06199 131 RLTAEELLDLL-RPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEGD-----TVPVFVQPN 203 (360)
T ss_pred CCCHHHHHHhC-cCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCCC-----EEEEEEecC
Confidence 99999999765 899999999999998777899999998866553 46678999999998764333 47787764
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|.|++|.+..+|+||||+|||||||+||++++.... ..++++||||||++..|++|++||+++.+.+.++++++||
T Consensus 204 ~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~----~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~ 279 (360)
T cd06199 204 PHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG----AKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAF 279 (360)
T ss_pred CCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc----CCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEE
Confidence 579999887899999999999999999999987542 2378999999999856999999999999988888899999
Q ss_pred ccCCCCcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCEEEee
Q 008747 475 SREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDV 554 (555)
Q Consensus 475 Sr~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 554 (555)
||++..++|||+.+.++.+.+++++.++++||||||+..|+++|+++|.+|++++++++.++|++|+++|+++|||++||
T Consensus 280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 359 (360)
T cd06199 280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDV 359 (360)
T ss_pred ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 99987889999999999889988887789999999944899999999999999999999999999999999999999999
Q ss_pred C
Q 008747 555 W 555 (555)
Q Consensus 555 w 555 (555)
|
T Consensus 360 w 360 (360)
T cd06199 360 Y 360 (360)
T ss_pred C
Confidence 9
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=6.4e-71 Score=592.84 Aligned_cols=368 Identities=38% Similarity=0.655 Sum_probs=321.1
Q ss_pred ccCCCCCeeeEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCC
Q 008747 149 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 228 (555)
Q Consensus 149 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~~~~V~~~l~~l~l~~~~~~~i~~~~~ 228 (555)
.++..+|+.++|+.|++||+++++++++||+||+++.+++|+|||+|+|+|+|+++.|+++|++||++++..+
T Consensus 162 ~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~------- 234 (530)
T PRK06214 162 GTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI------- 234 (530)
T ss_pred ccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc-------
Confidence 4567789999999999999999999999999999888999999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 008747 229 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 308 (555)
Q Consensus 229 ~~~~~~~~~~~~~~p~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dv 308 (555)
.++|++++|++|+||+++| +.+|+.|+.++++++ |++|+.|++.+..+... ...+++|+
T Consensus 235 --------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~~-----~~~~vldv 293 (530)
T PRK06214 235 --------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGDA-----ATLDVLAA 293 (530)
T ss_pred --------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhhh-----hhCcHHHH
Confidence 1479999999999999876 889999999998776 77887887533322111 23689999
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCcee
Q 008747 309 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 388 (555)
Q Consensus 309 l~~f~s~~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v 388 (555)
|++||++++|++++++.+ |+++||+|||||+|..++++++|+|+++.+.. .++.+.|+||+||++..+.|+ .+
T Consensus 294 L~~fp~~~~~~~~lle~l-p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~Gd-----~V 366 (530)
T PRK06214 294 LEKFPGIRPDPEAFVEAL-DPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPGT-----RV 366 (530)
T ss_pred HHhCCCCCCCHHHHHhhc-CCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCCC-----EE
Confidence 999999999999999765 99999999999999866789999999886653 467788999999985433333 36
Q ss_pred eEEEec-CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCc
Q 008747 389 PIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 467 (555)
Q Consensus 389 ~v~~~~-~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~ 467 (555)
.++++. ++|++|.+..+|+||||+||||||||||++++..... .++++||||||+...|++|++||+++.+.+.+
T Consensus 367 ~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~----~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l 442 (530)
T PRK06214 367 RVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKA----PGRNWLFFGHQRSATDFFYEDELNGLKAAGVL 442 (530)
T ss_pred EEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcC----CCCeEEEEEecCChhhhHHHHHHHHHHHhCCc
Confidence 777754 3499998778999999999999999999999875432 37899999998876799999999999999988
Q ss_pred ceEEEEEccCCCCcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 008747 468 SQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMT 547 (555)
Q Consensus 468 ~~l~~a~Sr~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~ 547 (555)
++++++|||++..++|||++|.++..++++++.++++||||||++.|+++|+++|.+|+.++++++.++|++|+++|+++
T Consensus 443 ~~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~~ 522 (530)
T PRK06214 443 TRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKA 522 (530)
T ss_pred eEEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 88999999998889999999999988999988788999999996679999999999999999999999999999999999
Q ss_pred CCEEEeeC
Q 008747 548 GRYLRDVW 555 (555)
Q Consensus 548 ~Ry~~dvw 555 (555)
|||++|||
T Consensus 523 gRY~~Dvw 530 (530)
T PRK06214 523 GRYQADVY 530 (530)
T ss_pred CCEEEecC
Confidence 99999999
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=5.6e-47 Score=369.24 Aligned_cols=216 Identities=45% Similarity=0.820 Sum_probs=183.4
Q ss_pred cCCCCCeeeEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCC
Q 008747 150 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 229 (555)
Q Consensus 150 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~~~~V~~~l~~l~l~~~~~~~i~~~~~~ 229 (555)
++..+|+.++|+.+++|++++++|+|+||+|++++.+++|+|||+|+|+|+|+++.|++++++||+++|+.|+++.....
T Consensus 3 ~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~~ 82 (219)
T PF00667_consen 3 YSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQN 82 (219)
T ss_dssp HBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESSTT
T ss_pred cCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEecccc
Confidence 45678999999999999999999999999999998899999999999999999999999999999999999999865432
Q ss_pred CCCCCCCCCCCCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 008747 230 GTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 308 (555)
Q Consensus 230 ~~~~~~~~~~~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dv 308 (555)
.....++| |+|++++|++|+||+++|++.||+.||.|++|+++|++|++|++.+|++.|.+|+.+.+++++|+
T Consensus 83 ------~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~di 156 (219)
T PF00667_consen 83 ------NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDI 156 (219)
T ss_dssp ------SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHH
T ss_pred ------cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHH
Confidence 23445778 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchh
Q 008747 309 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW 372 (555)
Q Consensus 309 l~~f~s~~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~ 372 (555)
|.+||++++|++.||+.+ |+++||+|||||||..++++++|||++|.+.++.|+.+.|+||+|
T Consensus 157 l~~fps~~~pl~~ll~~l-p~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 157 LEDFPSCKPPLEELLELL-PPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHSTTBTC-HHHHHHHS--B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HhhCcccCCCHHHhhhhC-CCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999765 999999999999999999999999999999889999999999997
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=1.3e-38 Score=329.62 Aligned_cols=272 Identities=24% Similarity=0.452 Sum_probs=221.2
Q ss_pred cCCCCCeeeEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCC
Q 008747 150 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 229 (555)
Q Consensus 150 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~~~~V~~~l~~l~l~~~~~~~i~~~~~~ 229 (555)
|...+|+.++|+.|.+++..+...+++||.|+.+ ..+.|+||..+.|.|+..+
T Consensus 85 ~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~-~~~~f~~GQfv~I~~~g~~-------------------------- 137 (367)
T PLN03115 85 FRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTE-GEIPYREGQSIGVIPDGID-------------------------- 137 (367)
T ss_pred eccCCCeEEEEEeecccccCCCCCceEEEEEcCC-CCCCcCCCCEEEEEcCCcC--------------------------
Confidence 5677899999999999999888899999999865 4689999999988553100
Q ss_pred CCCCCCCCCCCCCCcchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHH
Q 008747 230 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVM 309 (555)
Q Consensus 230 ~~~~~~~~~~~~~p~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl 309 (555)
.. |
T Consensus 138 ---------------------------~~-------------------------------g------------------- 140 (367)
T PLN03115 138 ---------------------------KN-------------------------------G------------------- 140 (367)
T ss_pred ---------------------------CC-------------------------------C-------------------
Confidence 00 0
Q ss_pred hhCCCCCCChHHHHHHhcCCCcccccccCCCCCC---CCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCc
Q 008747 310 SEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCS 386 (555)
Q Consensus 310 ~~f~s~~~p~~~ll~~~~p~~~pR~YSIaSsp~~---~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~ 386 (555)
.+..+|+|||||+|.. .++.++|+|+.+.+....|....|.||+||+++.+|+.
T Consensus 141 ------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~----- 197 (367)
T PLN03115 141 ------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAE----- 197 (367)
T ss_pred ------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcCE-----
Confidence 1234699999999853 24689999988766666677788999999999777543
Q ss_pred eeeEEEecCCCC-CCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCCCCcHHHHHHHHHc
Q 008747 387 WAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQS 464 (555)
Q Consensus 387 ~v~v~~~~~~F~-lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~del~~~~~~ 464 (555)
+.+..|.|.|. +|.+..+|+||||+|||||||+||++++....... ...++++||||||+.+ |++|.+||+++++.
T Consensus 198 -V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~l~~~ 275 (367)
T PLN03115 198 -VKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEK 275 (367)
T ss_pred -EEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHHHHHh
Confidence 67778877764 56566789999999999999999999875432211 1136899999999987 99999999999887
Q ss_pred CC-cceEEEEEccCCC----CcccccchhhccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHH
Q 008747 465 GA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAE 538 (555)
Q Consensus 465 ~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~ 538 (555)
.. .++++.++||++. .++|||++|.++.+.+++++ ..+++|||||| ++|+++|.++|.++...++ + +++
T Consensus 276 ~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~~~g-~---~~~ 350 (367)
T PLN03115 276 APENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAKDG-I---DWF 350 (367)
T ss_pred CCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHHHhC-c---cHH
Confidence 53 5689999999754 57999999999988888877 45789999999 8999999999999998874 3 578
Q ss_pred HHHHHHHHCCCEEEeeC
Q 008747 539 SMVKNLQMTGRYLRDVW 555 (555)
Q Consensus 539 ~~~~~l~~~~Ry~~dvw 555 (555)
+++++|+++|||+.|||
T Consensus 351 ~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 351 EYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHCCCeEEecC
Confidence 99999999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=2.3e-37 Score=310.40 Aligned_cols=218 Identities=49% Similarity=0.908 Sum_probs=186.0
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecC-CCCCCCCCCCCeEE
Q 008747 331 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIM 409 (555)
Q Consensus 331 ~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~-~F~lp~~~~~piim 409 (555)
.+|+|||||+|....+.++|+|+.+....+.+..+.|.+|.||+++.+|+ .+.+..+.| .|.++.+..+|+||
T Consensus 47 ~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~Gd------~v~v~~p~G~~f~l~~~~~~~~vl 120 (267)
T cd06182 47 QPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGA------KVTVFIRPAPSFRLPKDPTTPIIM 120 (267)
T ss_pred CCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCCCC------EEEEEEecCCcccCCCCCCCCEEE
Confidence 46999999999754688999998876655556667899999999876654 367888878 89998776789999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCCCC-cccccchh
Q 008747 410 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKM 488 (555)
Q Consensus 410 Ia~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~-k~yVq~~l 488 (555)
||+|||||||+||++++......+...++++||||+|+.+.|++|+++|+++.+.+...+++.++||+... ++||++.+
T Consensus 121 IAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~~~~~~~S~~~~~~~~~v~~~l 200 (267)
T cd06182 121 VGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALTRLDVAFSREQAEPKVYVQDKL 200 (267)
T ss_pred EecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcceEEEEEccCCCCCceehHHHH
Confidence 99999999999999998763211222478999999999933999999999999987777899999997553 78999999
Q ss_pred hccHHHHHHHHhCCCEEEEecCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCEEEeeC
Q 008747 489 MEKSSDIWNMLSEGAYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 555 (555)
Q Consensus 489 ~~~~~~v~~~l~~~~~iyvCG~~~~-M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (555)
.+..+.+++.+.+++.||+||| +. |+++|.++|.++++++++++.++|++++++|++.|||++|+|
T Consensus 201 ~~~~~~l~~~l~~~~~vyvCGp-~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (267)
T cd06182 201 KEHAEELRRLLNEGAHIYVCGD-AKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267 (267)
T ss_pred HHhHHHHHHHHhcCCEEEEECC-cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeEEecC
Confidence 8877777776666779999999 78 999999999999999999999999999999999999999999
No 16
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=2.7e-33 Score=284.29 Aligned_cols=189 Identities=34% Similarity=0.685 Sum_probs=157.1
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEE-ecCCCCCCCCCCCCeEEE
Q 008747 332 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV-RQSNFKLPADAKVPIIMI 410 (555)
Q Consensus 332 pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~-~~~~F~lp~~~~~piimI 410 (555)
+|+|||+|+|. .+.++|+|+.+ ..|.+|+||+++.+|+. +.+.+ +.|.|.++ +..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~------v~v~~~~~g~F~~~-~~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRKH---------PGGLCSGYLHGLKPGDT------IKAFIRPNPSFRPA-KGAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEeC---------CCccchhhHhhCCCcCE------EEEEeccCCCccCC-CCCCCEEEE
Confidence 69999999984 47788877643 34999999998766543 55665 46789876 457899999
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCCCCcccccchhhc
Q 008747 411 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 490 (555)
Q Consensus 411 a~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~ 490 (555)
|+|||||||+||+++... .++++||||+|+++.|.+|++||+++.+.+.+.+++.++||++ .++|||+.+..
T Consensus 162 AgGtGIaP~~s~l~~~~~-------~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 162 GAGTGIAPLAGFIRANAA-------RRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred ecCcCHHHHHHHHHhhhc-------cCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHH
Confidence 999999999999997521 2689999999998558999999999998887778889999975 48999999988
Q ss_pred cHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCEEEeeC
Q 008747 491 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 555 (555)
Q Consensus 491 ~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (555)
..+.+.+++.+++.||+||| +.|+++|.+.|.+|+.+.+ + -+.+++++|||.+|||
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGS-RAMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 77667666767899999999 8999999999999998754 2 3888999999999998
No 17
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=2.1e-34 Score=285.85 Aligned_cols=211 Identities=33% Similarity=0.538 Sum_probs=171.7
Q ss_pred CChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEe-c
Q 008747 317 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR-Q 394 (555)
Q Consensus 317 ~p~~~ll~~~~p~-~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~-~ 394 (555)
.-+|||+.+.++. ..+|+|||||+|. .+.++|+|+.+.. +.| +.|.+|+||++..+.|+ .+.+..+ +
T Consensus 32 f~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~--~~~--~~G~~S~~L~~~~~~Gd-----~v~i~gp~g 100 (245)
T cd06200 32 WQAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRH--ADG--GLGLGSGWLTRHAPIGA-----SVALRLREN 100 (245)
T ss_pred ccCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEecc--CCC--CCeeechhhhhCCCCCC-----EEEEEecCC
Confidence 3478988654342 5789999999995 4789988876522 112 34999999998754333 3667776 4
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
+.|.+|. ..+|+||||+|||||||+||++++.... .++++||||+|+.+.|++|.+||++|.+.+..++++.++
T Consensus 101 g~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~-----~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~~ 174 (245)
T cd06200 101 PGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG-----RHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLDLAF 174 (245)
T ss_pred CcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc-----CCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEEEEE
Confidence 5788875 5689999999999999999999987532 257999999999855899999999999988888899999
Q ss_pred ccCCCCcccccchhhccHHHHHHHHhCCCEEEEecCCc-chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCEEEe
Q 008747 475 SREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAK-SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRD 553 (555)
Q Consensus 475 Sr~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~-~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~d 553 (555)
||++..++||++.+.++.+.+.+++..+++||+||| + +|+++|.+.|.+++++ +.+++|+++|||.+|
T Consensus 175 s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp-~~~m~~~v~~~l~~~~~~----------~~~~~~~~~~r~~~d 243 (245)
T cd06200 175 SRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGS-LQGMAPGVDAVLDEILGE----------EAVEALLAAGRYRRD 243 (245)
T ss_pred ccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECC-chhhhHHHHHHHHHHHHH----------HHHHHHHHCCCeEEe
Confidence 998767899999998887777766666789999999 7 9999999999999975 348899999999999
Q ss_pred eC
Q 008747 554 VW 555 (555)
Q Consensus 554 vw 555 (555)
+|
T Consensus 244 ~~ 245 (245)
T cd06200 244 VY 245 (245)
T ss_pred cC
Confidence 99
No 18
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=7.2e-33 Score=293.30 Aligned_cols=270 Identities=23% Similarity=0.403 Sum_probs=211.7
Q ss_pred ccCCCCCeeeEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCC
Q 008747 149 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 228 (555)
Q Consensus 149 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~~~~V~~~l~~l~l~~~~~~~i~~~~~ 228 (555)
.|+..+|+.++|+.+++++..+...++++|.|+.++....|+||.++.|.++...
T Consensus 136 ~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~------------------------- 190 (411)
T TIGR03224 136 LYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD------------------------- 190 (411)
T ss_pred cccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC-------------------------
Confidence 3567789999999999999887788999999998755678899988877432100
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 008747 229 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 308 (555)
Q Consensus 229 ~~~~~~~~~~~~~~p~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dv 308 (555)
. .+
T Consensus 191 ----------------------------~-------------------------------~g------------------ 193 (411)
T TIGR03224 191 ----------------------------A-------------------------------SG------------------ 193 (411)
T ss_pred ----------------------------c-------------------------------CC------------------
Confidence 0 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCC---CCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCC
Q 008747 309 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVA---PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 385 (555)
Q Consensus 309 l~~f~s~~~p~~~ll~~~~p~~~pR~YSIaSsp~~~---~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~ 385 (555)
.+...|+|||||+|... .+.++|+|+.+.. ...|+...|.+|+||+++.+|+
T Consensus 194 -------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~Gd----- 248 (411)
T TIGR03224 194 -------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKKGD----- 248 (411)
T ss_pred -------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCCcC-----
Confidence 11346999999987421 1479999987642 3456667899999999976654
Q ss_pred ceeeEEEecCC-CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHc
Q 008747 386 SWAPIFVRQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS 464 (555)
Q Consensus 386 ~~v~v~~~~~~-F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~ 464 (555)
.+.+..+.|. |.+|....+|+||||+|||||||+||++++...... ...++++||||+|+.+ |++|.+||+++.+.
T Consensus 249 -~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~-~~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~ 325 (411)
T TIGR03224 249 -KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDH-GEGGKLMLFFGARTKE-ELPYFGPLQKLPKD 325 (411)
T ss_pred -EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhc-CCCCCEEEEEecCccc-cchHHHHHHHHHhc
Confidence 3677778675 667755568999999999999999999998754221 1247899999999997 99999999999865
Q ss_pred CCcceEEEEEccCCC-CcccccchhhccHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008747 465 GALSQLIVAFSREGP-TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVK 542 (555)
Q Consensus 465 ~~~~~l~~a~Sr~~~-~k~yVq~~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~ 542 (555)
. .++++++||+.. .++|||+.+.+..+.+.+++. .++.||+||| +.|+++|.+.|.++..+. ++. .+++++
T Consensus 326 ~--~~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~~~-~~~---~~~~~~ 398 (411)
T TIGR03224 326 F--IDINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCATN-GLS---WETLEP 398 (411)
T ss_pred C--ceEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHHHc-CcC---HHHHHH
Confidence 4 257779999643 589999999988777777664 4689999999 899999999999999765 343 467999
Q ss_pred HHHHCCCEEEeeC
Q 008747 543 NLQMTGRYLRDVW 555 (555)
Q Consensus 543 ~l~~~~Ry~~dvw 555 (555)
+|+++|||+.|+|
T Consensus 399 ~l~~~~r~~~e~~ 411 (411)
T TIGR03224 399 RLRAEGRLHLETY 411 (411)
T ss_pred HHHHCCCeEEecC
Confidence 9999999999999
No 19
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=1.1e-33 Score=289.61 Aligned_cols=213 Identities=29% Similarity=0.465 Sum_probs=167.6
Q ss_pred cccccccCCCCCCC---CCeEEEEEEEEEeeCCC---CC-eeccccchhhhccCCCCcCCCCceeeEEEecCCCCC-CC-
Q 008747 331 QPRYYSISSSPRVA---PSRIHVTCALVYEKTPT---GR-VHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKL-PA- 401 (555)
Q Consensus 331 ~pR~YSIaSsp~~~---~~~i~i~v~~v~~~~~~---g~-~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~F~l-p~- 401 (555)
..|+|||||+|... ..+++|+|+.+.+..+. +. ...|.+|+||+++.+|+ .+.|..+.|.|.+ |.
T Consensus 80 ~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~~~~ 153 (307)
T PLN03116 80 NVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGD------KVQITGPSGKVMLLPEE 153 (307)
T ss_pred CceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCC------EEEEEEecCCceeCCCC
Confidence 47999999999532 23799999877544332 11 25699999999965543 3678888888876 43
Q ss_pred CCCCCeEEEccCCccchhHHHHHHHHHHHhh-cCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCC-cceEEEEEccCCC
Q 008747 402 DAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP 479 (555)
Q Consensus 402 ~~~~piimIa~GTGiAPf~s~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~-~~~l~~a~Sr~~~ 479 (555)
+..+|+||||+|||||||+||+++....... ....++++||||+|+.+ |++|.+||++|++... .++++.++||+..
T Consensus 154 ~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~deL~~l~~~~~~~~~~~~~~sr~~~ 232 (307)
T PLN03116 154 DPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDEFERYLKDYPDNFRYDYALSREQK 232 (307)
T ss_pred CCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHHHHHHHHhCCCcEEEEEEEccCCc
Confidence 4568999999999999999999987654211 11136899999999987 9999999999988764 4578999999753
Q ss_pred ----CcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCEEEeeC
Q 008747 480 ----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 555 (555)
Q Consensus 480 ----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (555)
.++||++.|.+..+.++..+..++.||+||| +.|++++.+.|.+++.+. |++ |++.++.|+++|||++|+|
T Consensus 233 ~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp-~~mv~~v~~~L~~~~~~~-g~~---~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 233 NKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGL-KGMMPGIQDTLKRVAEER-GES---WEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred ccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCC-HHHHHHHHHHHHHHHHHc-Ccc---HHHHHHHHHHcCceEEecC
Confidence 3679999888766666555556789999999 899999999999988775 453 5689999999999999999
No 20
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=3.8e-33 Score=283.12 Aligned_cols=225 Identities=30% Similarity=0.482 Sum_probs=176.7
Q ss_pred ChHHHHHHhcCC--------CcccccccCCCCCCC---CCeEEEEEEEEEeeCCCC-CeeccccchhhhccCCCCcCCCC
Q 008747 318 PLGVFFAAIVPR--------LQPRYYSISSSPRVA---PSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDC 385 (555)
Q Consensus 318 p~~~ll~~~~p~--------~~pR~YSIaSsp~~~---~~~i~i~v~~v~~~~~~g-~~~~G~~S~~L~~~~~~~~~~~~ 385 (555)
.+||++.+.+|. ..+|+|||||+|... ++.++|+|+.+...++.+ ..+.|.+|+||+++.+|+
T Consensus 42 ~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd----- 116 (286)
T cd06208 42 LEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGD----- 116 (286)
T ss_pred cCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCC-----
Confidence 357777543332 246999999998632 468999998875544433 456699999999976543
Q ss_pred ceeeEEEecCCCCCC-CCCCCCeEEEccCCccchhHHHHHHHHHHHhh-cCCCCCeEEEEeccCCCCCCCcHHHHHHHHH
Q 008747 386 SWAPIFVRQSNFKLP-ADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 463 (555)
Q Consensus 386 ~~v~v~~~~~~F~lp-~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~ly~del~~~~~ 463 (555)
.+.+..+.|.|.+. .+..+|+||||+|||||||+||++++...... ....++++||||+|+++ |++|.++|+++.+
T Consensus 117 -~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~ 194 (286)
T cd06208 117 -DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEKYPK 194 (286)
T ss_pred -EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHHHHH
Confidence 36788887887654 44567999999999999999999998764211 12236899999999997 9999999999998
Q ss_pred cC-CcceEEEEEccCCC----CcccccchhhccHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHH
Q 008747 464 SG-ALSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 537 (555)
Q Consensus 464 ~~-~~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a 537 (555)
.. ...+++.++||++. .++||++.+.+..+.+++.+. .+..||+||| +.|+++|.+.|.+++. +..+|
T Consensus 195 ~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~-----~~~~~ 268 (286)
T cd06208 195 QYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE-----GGLAW 268 (286)
T ss_pred hCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh-----ccHHH
Confidence 64 34578999998743 578999999887777777664 4569999999 8999999999999997 23579
Q ss_pred HHHHHHHHHCCCEEEeeC
Q 008747 538 ESMVKNLQMTGRYLRDVW 555 (555)
Q Consensus 538 ~~~~~~l~~~~Ry~~dvw 555 (555)
++++++|+++|||.+|+|
T Consensus 269 ~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 269 EEFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHHHHHHcCCeEEecC
Confidence 999999999999999999
No 21
>PRK05723 flavodoxin; Provisional
Probab=99.93 E-value=1.1e-25 Score=205.56 Aligned_cols=98 Identities=22% Similarity=0.305 Sum_probs=90.2
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCc-hHHHHHHHHHHHHHHHcCCcccccccccc
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGD 80 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~~~~~l~~lGa~~i~~~~~~d 80 (555)
.+||++||||+|++|+|+..||++|++.. ...|++++|||||||||+| ++||.+++++|++|+++||+||++++++|
T Consensus 50 ~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~--~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D 127 (151)
T PRK05723 50 ALLAVTSTTGMGELPDNLMPLYSAIRDQL--PAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLD 127 (151)
T ss_pred eEEEEECCCCCCCCchhHHHHHHHHHhcC--ccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEee
Confidence 58999999999999999999999998642 2259999999999999999 89999999999999999999999999999
Q ss_pred CC--CCchhhHHHHHHHHHHHHH
Q 008747 81 DD--QCIEDDFSAWRELVWPELD 101 (555)
Q Consensus 81 ~~--~~~~~~~~~W~~~l~~~l~ 101 (555)
++ .+.+++|++|++.+|++|.
T Consensus 128 ~~~~~~~e~~~~~W~~~~~~~l~ 150 (151)
T PRK05723 128 ASETVTPETDAEPWLAEFAAALK 150 (151)
T ss_pred cCCCCChHHHHHHHHHHHHHHhc
Confidence 87 4689999999999998874
No 22
>PRK09004 FMN-binding protein MioC; Provisional
Probab=99.91 E-value=1.8e-24 Score=196.90 Aligned_cols=97 Identities=24% Similarity=0.350 Sum_probs=88.7
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCcccccccccc
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGD 80 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~d 80 (555)
+.+||++||||+|++|+|++.|++||++.. ..|++++||||||||++|++||.+++.+|++|+++||++|.+++++|
T Consensus 48 ~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~---~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D 124 (146)
T PRK09004 48 GLWLIVTSTHGAGDLPDNLQPFFEELQEQK---PDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKID 124 (146)
T ss_pred CeEEEEECCCCCCCCChhHHHHHHHHHhcC---CCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEe
Confidence 368999999999999999999999998752 35899999999999999999999999999999999999999999999
Q ss_pred CCC--CchhhHHHHHHHHHHHH
Q 008747 81 DDQ--CIEDDFSAWRELVWPEL 100 (555)
Q Consensus 81 ~~~--~~~~~~~~W~~~l~~~l 100 (555)
++. +.|++|++|++.++.+|
T Consensus 125 ~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 125 VLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred CCCCCCchhHHHHHHHHHHHhC
Confidence 864 46889999999988764
No 23
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.91 E-value=3.3e-24 Score=209.34 Aligned_cols=186 Identities=28% Similarity=0.489 Sum_probs=140.7
Q ss_pred CChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEe
Q 008747 317 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 393 (555)
Q Consensus 317 ~p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 393 (555)
..+||++.+.+|. ...|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+++.+|+ .+.+..+
T Consensus 23 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~---------~~G~~s~~l~~~~~G~------~v~i~gP 86 (223)
T cd00322 23 FKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIV---------PGGPFSAWLHDLKPGD------EVEVSGP 86 (223)
T ss_pred cCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEe---------CCCchhhHHhcCCCCC------EEEEECC
Confidence 3578888655453 57899999999863 47788888754 2489999999885543 3667778
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEE
Q 008747 394 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 473 (555)
Q Consensus 394 ~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 473 (555)
.|.|.++.+..+|+||||+|||||||++++++..... ..++++|+||+|+.. |++|++||+++.+.+...+++.+
T Consensus 87 ~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 161 (223)
T cd00322 87 GGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK----PGGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVLA 161 (223)
T ss_pred CcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC----CCCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEE
Confidence 8888766566789999999999999999999987642 236899999999997 99999999999987766688999
Q ss_pred EccCCCCcccccchhhccHHHHHHH-H-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 474 FSREGPTKEYVQHKMMEKSSDIWNM-L-SEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 474 ~Sr~~~~k~yVq~~l~~~~~~v~~~-l-~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
++|+.....+.+..+... +.+... . ..+..+|+||| +.|++.+.+.|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~ 213 (223)
T cd00322 162 LSRESEAKLGPGGRIDRE-AEILALLPDDSGALVYICGP-PAMAKAVREALVSL 213 (223)
T ss_pred ecCCCCCCCcccceeeHH-HHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 998755433333332211 111111 1 35789999999 89999999998764
No 24
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.91 E-value=2.8e-24 Score=218.06 Aligned_cols=178 Identities=19% Similarity=0.354 Sum_probs=133.4
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEeeCCCC--CeeccccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEE
Q 008747 332 PRYYSISSSPRVAPSRIHVTCALVYEKTPTG--RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 409 (555)
Q Consensus 332 pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g--~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~F~lp~~~~~piim 409 (555)
.|+|||+|+|.. .+.++|+|+.... +.+ +...|.+|+||+++.+|+ .+.+..+.|.|.++ +..+|+||
T Consensus 86 ~R~ySias~p~~-~~~l~l~vk~~~~--~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~-~~~~~~vl 155 (283)
T cd06188 86 SRAYSLANYPAE-EGELKLNVRIATP--PPGNSDIPPGIGSSYIFNLKPGD------KVTASGPFGEFFIK-DTDREMVF 155 (283)
T ss_pred ccccCcCCCCCC-CCeEEEEEEEecc--CCccCCCCCceehhHHhcCCCCC------EEEEECcccccccc-CCCCcEEE
Confidence 399999999863 4788988875422 111 234699999999876644 36677788999886 35689999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCC------CCccc
Q 008747 410 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG------PTKEY 483 (555)
Q Consensus 410 Ia~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~------~~k~y 483 (555)
||+|||||||+||++++..... ...+++||||+|+.+ |++|.+||+++.+.....+++.++|++. ..++|
T Consensus 156 IAgGtGItP~~s~l~~~~~~~~---~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~ 231 (283)
T cd06188 156 IGGGAGMAPLRSHIFHLLKTLK---SKRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGF 231 (283)
T ss_pred EEecccHhHHHHHHHHHHhcCC---CCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCccee
Confidence 9999999999999998765321 125899999999986 9999999999998766667888888753 13578
Q ss_pred ccchhhccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 008747 484 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 526 (555)
Q Consensus 484 Vq~~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~ 526 (555)
|++.+.+.. +.... ..+..+|+||| +.|++++.+.|.+.+
T Consensus 232 v~~~~~~~~--~~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~G 272 (283)
T cd06188 232 IHQVLLENY--LKKHPAPEDIEFYLCGP-PPMNSAVIKMLDDLG 272 (283)
T ss_pred ecHHHHHHH--hccCCCCCCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 888765531 11011 23568999999 899999999887743
No 25
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.91 E-value=3.7e-24 Score=209.67 Aligned_cols=183 Identities=20% Similarity=0.318 Sum_probs=141.5
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEEec
Q 008747 316 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 394 (555)
Q Consensus 316 ~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~~ 394 (555)
...+||++.+.+|....|+|||+|.|.. .+.++|+|+.+ ..|.+|++|.+ +.+|+ .+.+..+.
T Consensus 25 ~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~ 88 (224)
T cd06189 25 DFLAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAV---------PGGSFSDYVFEELKENG------LVRIEGPL 88 (224)
T ss_pred ccCCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEec---------CCCccHHHHHHhccCCC------EEEEecCC
Confidence 4457888765556667899999999863 47888887654 24888999986 55543 36677778
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|.|.++.+..+++||||+|||||||++++++..... ...+++|+||+|+.. |++|++||+++.++....+++.++
T Consensus 89 G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 163 (224)
T cd06189 89 GDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG----SKRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPVL 163 (224)
T ss_pred ccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC----CCCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEEe
Confidence 888887666789999999999999999999987542 136899999999997 999999999999876666788889
Q ss_pred ccCCC----CcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 475 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 475 Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
|++.. .++|+++.+.+... + ..+..+|+||| +.|++++.+.|.+.
T Consensus 164 s~~~~~~~g~~g~v~~~l~~~~~---~--~~~~~v~vCGp-~~m~~~~~~~l~~~ 212 (224)
T cd06189 164 SEPEEGWQGRTGLVHEAVLEDFP---D--LSDFDVYACGS-PEMVYAARDDFVEK 212 (224)
T ss_pred CCCCcCCccccccHHHHHHhhcc---C--ccccEEEEECC-HHHHHHHHHHHHHc
Confidence 98532 45788776654210 1 24679999999 89999999988763
No 26
>PRK08105 flavodoxin; Provisional
Probab=99.91 E-value=5.1e-24 Score=194.62 Aligned_cols=96 Identities=27% Similarity=0.474 Sum_probs=87.6
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCcccccccccc
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGD 80 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~d 80 (555)
+.+||++||||+|+||+|+.+|+++|++. ...|++++|||||||||+|++||.+++++|++|+++||++|++++++|
T Consensus 50 ~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~---~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D 126 (149)
T PRK08105 50 ELVLVVTSTTGQGDLPDSIVPLFQALKDT---AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEID 126 (149)
T ss_pred CeEEEEECCCCCCCCChhHHHHHHHHHhc---CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeee
Confidence 36999999999999999999999999864 235999999999999999999999999999999999999999999999
Q ss_pred CCC--CchhhHHHHHHHHHHHH
Q 008747 81 DDQ--CIEDDFSAWRELVWPEL 100 (555)
Q Consensus 81 ~~~--~~~~~~~~W~~~l~~~l 100 (555)
++. +.++.|++|++. |..+
T Consensus 127 ~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 127 ACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred CCCCCChHHHHHHHHHH-HHHH
Confidence 855 578999999999 7654
No 27
>PRK08051 fre FMN reductase; Validated
Probab=99.90 E-value=5.6e-24 Score=209.58 Aligned_cols=183 Identities=17% Similarity=0.224 Sum_probs=136.5
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhh-hccCCCCcCCCCceeeEEEec
Q 008747 316 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWM-KNSLPMEKSNDCSWAPIFVRQ 394 (555)
Q Consensus 316 ~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L-~~~~~~~~~~~~~~v~v~~~~ 394 (555)
...+||++...+|....|+|||+|.|.. .+.++|+|+.+ ..|..|.++ .++.+|+ .+.+..+.
T Consensus 29 ~~~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~---------~~~~~~~~~~~~l~~G~------~v~v~gP~ 92 (232)
T PRK08051 29 SFRAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGAS---------ELNLYAMAVMERILKDG------EIEVDIPH 92 (232)
T ss_pred ccCCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEc---------CCCcchHHHHHHcCCCC------EEEEEcCC
Confidence 3457888755446667899999999853 46788877643 124445555 4454543 36777788
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|.|.++.+..+|+||||+||||||+++++++..... ...+++|+||+|+.+ |.+|.+||+++++.....+++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~----~~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T PRK08051 93 GDAWLREESERPLLLIAGGTGFSYARSILLTALAQG----PNRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPVV 167 (232)
T ss_pred CceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC----CCCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEEe
Confidence 888876556689999999999999999999987542 136899999999997 999999999999886666888888
Q ss_pred ccCCC----CcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHH-HHH
Q 008747 475 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL-HTI 525 (555)
Q Consensus 475 Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L-~~i 525 (555)
|++++ .++||++.+.+.. .+ ..+.++|+||| ++|+++|.+.| .+.
T Consensus 168 ~~~~~~~~~~~g~v~~~l~~~~---~~--~~~~~vyicGp-~~m~~~v~~~l~~~~ 217 (232)
T PRK08051 168 EQPEEGWQGKTGTVLTAVMQDF---GS--LAEYDIYIAGR-FEMAKIARELFCRER 217 (232)
T ss_pred CCCCCCcccceeeehHHHHhhc---cC--cccCEEEEECC-HHHHHHHHHHHHHHc
Confidence 87543 3677777665421 01 13568999999 89999999988 664
No 28
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.90 E-value=1.6e-23 Score=208.32 Aligned_cols=185 Identities=19% Similarity=0.239 Sum_probs=133.1
Q ss_pred ChHHHHHHhcC--C-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEec
Q 008747 318 PLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 394 (555)
Q Consensus 318 p~~~ll~~~~p--~-~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~ 394 (555)
-+|||+.+-++ . ...|+|||+|+|. .+.++++|+.+ ..|.+|+||+++.+|+ .+.+..+.
T Consensus 32 ~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~gp~ 94 (248)
T PRK10926 32 TAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTV---------PEGKLSPRLAALKPGD------EVQVVSEA 94 (248)
T ss_pred CCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEe---------CCCCcChHHHhCCCCC------EEEEecCC
Confidence 46777643332 1 2359999999985 35788777654 3489999999876654 35666654
Q ss_pred -CCCCCCCC-CCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcC-CcceEE
Q 008747 395 -SNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQLI 471 (555)
Q Consensus 395 -~~F~lp~~-~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~-~~~~l~ 471 (555)
|.|.++.. ..+|+||||+|||||||+||++++.... ..++++||||+|+.+ |++|++||+++++.. ...++.
T Consensus 95 ~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~----~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~v~ 169 (248)
T PRK10926 95 AGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE----RFKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLRIQ 169 (248)
T ss_pred CcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC----CCCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEEEE
Confidence 55666643 3479999999999999999999975432 136899999999987 999999999998764 344788
Q ss_pred EEEccCCC---CcccccchhhccH-HHHHH-HH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 472 VAFSREGP---TKEYVQHKMMEKS-SDIWN-ML-SEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 472 ~a~Sr~~~---~k~yVq~~l~~~~-~~v~~-~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
.++||+.. .+++|++.+.+.. ..... .+ .++..+|+||| +.|++++.+.|.+.
T Consensus 170 ~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 170 TVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKET 228 (248)
T ss_pred EEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHHh
Confidence 99998643 3578877664321 11111 11 24689999999 89999999887653
No 29
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.90 E-value=5.1e-24 Score=221.70 Aligned_cols=182 Identities=18% Similarity=0.280 Sum_probs=140.6
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEEecC
Q 008747 317 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQS 395 (555)
Q Consensus 317 ~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~~~ 395 (555)
..+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.+..|.|
T Consensus 132 ~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~l~~~l~~G~------~v~v~gP~G 195 (339)
T PRK07609 132 YLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHM---------PGGVFTDHVFGALKERD------ILRIEGPLG 195 (339)
T ss_pred cCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEec---------CCCccHHHHHHhccCCC------EEEEEcCce
Confidence 346888865556667899999999863 47899888654 34888999975 54443 366777889
Q ss_pred CCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEc
Q 008747 396 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 475 (555)
Q Consensus 396 ~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~S 475 (555)
.|.++....+|+||||+|||||||+||+++..... ..++++||||+|+++ |+++.++|++|.++....+++.++|
T Consensus 196 ~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~----~~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~s 270 (339)
T PRK07609 196 TFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG----IQRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVVS 270 (339)
T ss_pred eEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC----CCCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEec
Confidence 99987666789999999999999999999987532 136799999999997 8989999999987766668888999
Q ss_pred cCC------CCcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 476 REG------PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 476 r~~------~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
|+. ..++||++.+.+.. .+ ..+..+|+||| +.|++++.+.|.+.
T Consensus 271 ~~~~~~~~~g~~G~v~~~~~~~~---~~--~~~~~vy~CGp-~~m~~~~~~~l~~~ 320 (339)
T PRK07609 271 DALDDDAWTGRTGFVHQAVLEDF---PD--LSGHQVYACGS-PVMVYAARDDFVAA 320 (339)
T ss_pred CCCCCCCccCccCcHHHHHHhhc---cc--ccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 842 24578877665421 11 24579999999 89999999988763
No 30
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.90 E-value=1.2e-23 Score=208.04 Aligned_cols=183 Identities=25% Similarity=0.358 Sum_probs=138.7
Q ss_pred CChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEEec
Q 008747 317 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 394 (555)
Q Consensus 317 ~p~~~ll~~~~p~~-~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~~ 394 (555)
..+||++.+.+|.. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.+..+.
T Consensus 36 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~ 99 (238)
T cd06211 36 FQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLV---------PGGIATTYVHKQLKEGD------ELEISGPY 99 (238)
T ss_pred cCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEEC---------CCCcchhhHhhcCCCCC------EEEEECCc
Confidence 45788875544544 5799999999863 47788887654 24889999974 55543 36677778
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|.|.++.+..+|+||||+|||||||++++++...... ..+++|+||+|+.+ |++|.++|+++.+.....+++.++
T Consensus 100 G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 174 (238)
T cd06211 100 GDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD----TRKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPAL 174 (238)
T ss_pred cceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC----CCcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEEE
Confidence 8898876556899999999999999999999865321 25899999999997 999999999998876655788889
Q ss_pred ccCCC------CcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 475 SREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 475 Sr~~~------~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
||+.. .++|+++.+.+.. .+ ..++..+|+||| +.|++++.+.|.+.
T Consensus 175 s~~~~~~~~~~~~g~v~~~l~~~~---~~-~~~~~~vyvCGp-~~m~~~~~~~L~~~ 226 (238)
T cd06211 175 SREPPESNWKGFTGFVHDAAKKHF---KN-DFRGHKAYLCGP-PPMIDACIKTLMQG 226 (238)
T ss_pred CCCCCCcCcccccCcHHHHHHHhc---cc-ccccCEEEEECC-HHHHHHHHHHHHHc
Confidence 98532 3567776554421 00 014679999999 89999999998764
No 31
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.90 E-value=6.6e-24 Score=208.97 Aligned_cols=185 Identities=22% Similarity=0.223 Sum_probs=139.1
Q ss_pred CChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhcc-CCCCcCCCCceeeEEEec
Q 008747 317 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQ 394 (555)
Q Consensus 317 ~p~~~ll~~~~p~~-~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~-~~~~~~~~~~~v~v~~~~ 394 (555)
..+||++.+.+|.. .+|+|||+|.|.. .+.++|+|+.+ ..|.+|.||++. .+++ .+.|..+.
T Consensus 24 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~---------~~G~~s~~l~~~~~~g~------~v~v~gP~ 87 (232)
T cd06190 24 FLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRK---------PGGAASNALFDNLEPGD------ELELDGPY 87 (232)
T ss_pred cCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEc---------CCCcchHHHhhcCCCCC------EEEEECCc
Confidence 45688876555665 7899999999863 47888877643 248899999874 4433 36677777
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|.|.++.+..+++||||+|||||||++++++..... .....+++|+||+|+.+ |++|.+||+++.+.+...+++.++
T Consensus 88 G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~--~~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 164 (232)
T cd06190 88 GLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSP--YLSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPAV 164 (232)
T ss_pred ccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcc--cCCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEEe
Confidence 888776555689999999999999999999987531 11236899999999987 999999999999887666788888
Q ss_pred ccCCC--------CcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 475 SREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 475 Sr~~~--------~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
|++.. .++|+++.+.+... + ...+..||+||| +.|++++.+.|.+.
T Consensus 165 s~~~~~~~~~~~~~~g~v~~~l~~~~~---~-~~~~~~vyiCGp-~~m~~~v~~~l~~~ 218 (232)
T cd06190 165 SDAGSGSAAGWDGPTGFVHEVVEATLG---D-RLAEFEFYFAGP-PPMVDAVQRMLMIE 218 (232)
T ss_pred CCCCCCcCCCccCCcCcHHHHHHhhcc---C-CccccEEEEECC-HHHHHHHHHHHHHh
Confidence 87542 24566665544211 0 024689999999 89999999888764
No 32
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.90 E-value=1.4e-23 Score=208.03 Aligned_cols=186 Identities=19% Similarity=0.265 Sum_probs=139.7
Q ss_pred CChHHHHHHhcCCC----cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEE-
Q 008747 317 PPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 391 (555)
Q Consensus 317 ~p~~~ll~~~~p~~----~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~- 391 (555)
..+||++.+-+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||+++.+|+ .+.+.
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~l~~Gd------~v~v~~ 87 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILV---------PDGPLTPRLFKLKPGD------TIYVGK 87 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEe---------cCCCCchHHhcCCCCC------EEEECc
Confidence 34688875444432 4699999999863 6788877654 2488999999876654 35676
Q ss_pred EecCCCCCCCC-CCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHc-CCcce
Q 008747 392 VRQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQ 469 (555)
Q Consensus 392 ~~~~~F~lp~~-~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~-~~~~~ 469 (555)
.+.|.|.++.. ..++++|||+|||||||++++++..... ..++++||||+|+++ |++|.+||+++.+. ....+
T Consensus 88 gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~----~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 162 (241)
T cd06195 88 KPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE----RFDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKFR 162 (241)
T ss_pred CCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC----CCCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCEE
Confidence 67788988655 4689999999999999999999986432 236899999999997 99999999999876 44557
Q ss_pred EEEEEccCCCC---cccccchhhccHHHHHHHH-----hCCCEEEEecCCcchHHHHHHHHHHHHH
Q 008747 470 LIVAFSREGPT---KEYVQHKMMEKSSDIWNML-----SEGAYLYVCGDAKSMARDVHRTLHTIVQ 527 (555)
Q Consensus 470 l~~a~Sr~~~~---k~yVq~~l~~~~~~v~~~l-----~~~~~iyvCG~~~~M~~~v~~~L~~i~~ 527 (555)
+..++||++.. ++|+++.+.+. .+.+.+ ..+..||+||| +.|++++.+.|.+...
T Consensus 163 ~~~~~s~~~~~~~~~g~v~~~l~~~--~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G~ 225 (241)
T cd06195 163 YVPIVSREKENGALTGRIPDLIESG--ELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEKGF 225 (241)
T ss_pred EEEEECcCCccCCCceEhHHhhhhc--hhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHcCC
Confidence 78888886543 57888876531 111211 24679999999 8999999999877543
No 33
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.90 E-value=1.7e-23 Score=222.65 Aligned_cols=181 Identities=19% Similarity=0.333 Sum_probs=137.6
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEE
Q 008747 330 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 409 (555)
Q Consensus 330 ~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~F~lp~~~~~piim 409 (555)
...|+|||+|.|.. .+.++|+|+.+......++...|.+|+||+++.+|+ .+.|..|.|.|.++ +..+|+||
T Consensus 208 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~-~~~~~ivl 279 (409)
T PRK05464 208 PVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGD------KVTISGPFGEFFAK-DTDAEMVF 279 (409)
T ss_pred ceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCC------EEEEEccccCcEec-CCCceEEE
Confidence 35699999999863 468999887654433334456799999999876654 36678888999876 45689999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCCC------Cccc
Q 008747 410 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEY 483 (555)
Q Consensus 410 Ia~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~------~k~y 483 (555)
||+|||||||+||+++...... ...+++||||+|+++ |++|.++|+++.+.....+++.++||+.. .+++
T Consensus 280 IAgGtGIaP~~sml~~~l~~~~---~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 355 (409)
T PRK05464 280 IGGGAGMAPMRSHIFDQLKRLK---SKRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGF 355 (409)
T ss_pred EEeccChhHHHHHHHHHHhCCC---CCceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccce
Confidence 9999999999999998765321 136899999999997 99999999999887666678888887532 3578
Q ss_pred ccchhhccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 484 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 484 Vq~~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
|++.+.+.. +.+.. ..+..||+||| +.|++++.+.|.+.
T Consensus 356 v~~~l~~~~--l~~~~~~~~~~vyiCGP-~~m~~av~~~L~~~ 395 (409)
T PRK05464 356 IHNVLYENY--LKDHEAPEDCEYYMCGP-PMMNAAVIKMLKDL 395 (409)
T ss_pred eCHHHHHhh--hhhcCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 887765431 11111 24679999999 89999999988764
No 34
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.90 E-value=2.3e-23 Score=204.65 Aligned_cols=179 Identities=24% Similarity=0.352 Sum_probs=137.8
Q ss_pred CChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEEec
Q 008747 317 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 394 (555)
Q Consensus 317 ~p~~~ll~~~~p~~-~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~~ 394 (555)
..+||++.+.+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|.
T Consensus 31 ~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~v~gP~ 93 (228)
T cd06209 31 FLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLL---------PGGAMSSYLRDRAQPGD------RLTLTGPL 93 (228)
T ss_pred cCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEc---------CCCcchhhHHhccCCCC------EEEEECCc
Confidence 45788875544544 4799999999863 6788877643 34889999998 55543 35677777
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|.|.++.. .+|++|||+|||||||++++++..... ..++++|+||+|+.+ |++|.++|+++.+.....++...+
T Consensus 94 G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 167 (228)
T cd06209 94 GSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAEDG----SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTVV 167 (228)
T ss_pred ccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhcC----CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEEE
Confidence 88877643 589999999999999999999986532 236899999999987 999999999998876666788889
Q ss_pred ccCCC---CcccccchhhccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 475 SREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 475 Sr~~~---~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
||+.. .++||++.+.+. .+ ..+..+|+||| +.|++++++.|.+.
T Consensus 168 s~~~~~~~~~g~v~~~~~~~------~~~~~~~~v~icGp-~~m~~~~~~~l~~~ 215 (228)
T cd06209 168 ADPDSWHPRKGYVTDHLEAE------DLNDGDVDVYLCGP-PPMVDAVRSWLDEQ 215 (228)
T ss_pred cCCCccCCCcCCccHHHHHh------hccCCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 88543 456888766543 12 24578999999 89999999998763
No 35
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.89 E-value=2.2e-23 Score=216.69 Aligned_cols=180 Identities=19% Similarity=0.327 Sum_probs=139.1
Q ss_pred CChHHHHHHhcCCCc-ccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEEec
Q 008747 317 PPLGVFFAAIVPRLQ-PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 394 (555)
Q Consensus 317 ~p~~~ll~~~~p~~~-pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~~ 394 (555)
..+|||+.+.+|... .|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|.
T Consensus 137 ~~pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~L~~~l~~G~------~v~i~gP~ 200 (340)
T PRK11872 137 FLPGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRLL---------PDGVMSNYLRERCQVGD------EILFEAPL 200 (340)
T ss_pred cCCCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEEC---------CCCcchhhHhhCCCCCC------EEEEEcCc
Confidence 357888755445443 699999999863 57899888754 24888999975 55543 36677788
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|.|.++. ..+|+||||+|||||||+||+++..... ..++++||||+|+++ |++|.++|++|.++...++++.+.
T Consensus 201 G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~~----~~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~~ 274 (340)
T PRK11872 201 GAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQG----CSPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPVV 274 (340)
T ss_pred ceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHcC----CCCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEEE
Confidence 9998864 4589999999999999999999986532 136899999999997 999999999999876666888888
Q ss_pred ccCCC----CcccccchhhccHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHH
Q 008747 475 SREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 475 Sr~~~----~k~yVq~~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
|+... .++||++.+.+. .+. .+..||+||| +.|++++.+.|.+.
T Consensus 275 s~~~~~~~g~~g~v~~~l~~~------~l~~~~~~vy~CGp-~~mv~~~~~~L~~~ 323 (340)
T PRK11872 275 SKASADWQGKRGYIHEHFDKA------QLRDQAFDMYLCGP-PPMVEAVKQWLDEQ 323 (340)
T ss_pred eCCCCcCCCceeeccHHHHHh------hcCcCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 87532 467888766542 122 3468999999 89999999998764
No 36
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.89 E-value=1.3e-23 Score=205.67 Aligned_cols=182 Identities=22% Similarity=0.294 Sum_probs=139.4
Q ss_pred CChHHHHHHhcCCCc--ccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEEe
Q 008747 317 PPLGVFFAAIVPRLQ--PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 393 (555)
Q Consensus 317 ~p~~~ll~~~~p~~~--pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 393 (555)
..+||++.+.+|... .|+|||+|.|.. .+.++|+|+.. ..|.+|+||.+ +.+|+ .+.+..+
T Consensus 24 ~~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 87 (224)
T cd06187 24 FWAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAV---------PGGRVSNALHDELKVGD------RVRLSGP 87 (224)
T ss_pred cCCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeC---------CCCcchHHHhhcCccCC------EEEEeCC
Confidence 346888765545443 799999999863 46788877643 24889999998 65543 3667778
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEE
Q 008747 394 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 473 (555)
Q Consensus 394 ~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 473 (555)
.|.|.++.+..+++||||+|||||||++++++..... ...+++|+|++|+.+ |++|.++|+++.+.....++..+
T Consensus 88 ~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~----~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 162 (224)
T cd06187 88 YGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG----EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVPV 162 (224)
T ss_pred ccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC----CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEEE
Confidence 8888887655689999999999999999999987532 236899999999987 99999999999887666677778
Q ss_pred EccCCC----CcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 474 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 474 ~Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
++++.. .++|+++.+.+.. .+ ..+..+|+||| +.|++++++.|++.
T Consensus 163 ~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~~~v~vcGp-~~~~~~v~~~l~~~ 212 (224)
T cd06187 163 VSHEEGAWTGRRGLVTDVVGRDG---PD--WADHDIYICGP-PAMVDATVDALLAR 212 (224)
T ss_pred eCCCCCccCCCcccHHHHHHHhc---cc--cccCEEEEECC-HHHHHHHHHHHHHc
Confidence 887532 4578877665421 01 24689999999 89999999998764
No 37
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.89 E-value=3.1e-23 Score=220.51 Aligned_cols=181 Identities=18% Similarity=0.331 Sum_probs=135.2
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEE
Q 008747 330 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 409 (555)
Q Consensus 330 ~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~F~lp~~~~~piim 409 (555)
...|+|||+|+|.. .+.++|+|+.+.......+...|.+|.||+++.+|+ .+.+..|.|.|.+.. ..+|+||
T Consensus 204 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~lvl 275 (405)
T TIGR01941 204 ETVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGD------KVTISGPFGEFFAKD-TDAEMVF 275 (405)
T ss_pred ccceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcC------EEEEEeccCCCeecC-CCCCEEE
Confidence 34699999999963 478999887652211112345689999999876654 367888889998763 5689999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCCC------Cccc
Q 008747 410 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEY 483 (555)
Q Consensus 410 Ia~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~------~k~y 483 (555)
||+|||||||+||+++...... ...+++||||+|+++ |++|.+||+++.+.....+++.++|++.. .+++
T Consensus 276 IAgGtGIaP~lsmi~~~l~~~~---~~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 351 (405)
T TIGR01941 276 IGGGAGMAPMRSHIFDQLKRLK---SKRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGF 351 (405)
T ss_pred EecCcCcchHHHHHHHHHhcCC---CCCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccce
Confidence 9999999999999998764321 135799999999987 99999999999887766678888887532 3577
Q ss_pred ccchhhccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 484 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 484 Vq~~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
|++.+.+.. +.+.. ..+..||+||| +.|++++.+.|.+.
T Consensus 352 v~~~l~~~~--l~~~~~~~~~~vylCGP-~~m~~av~~~L~~~ 391 (405)
T TIGR01941 352 IHNVLYENY--LKDHDAPEDCEFYMCGP-PMMNAAVIKMLEDL 391 (405)
T ss_pred eCHHHHHhh--hcccCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 877664421 11111 24678999999 89999999988764
No 38
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.89 E-value=2.7e-23 Score=211.17 Aligned_cols=180 Identities=21% Similarity=0.268 Sum_probs=133.3
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCC
Q 008747 317 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 396 (555)
Q Consensus 317 ~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~ 396 (555)
..+||++.+.+|....|+|||+|+|.. .+.++|+|+.+ |.+|+||+++.+|+ .+.+..|.|.
T Consensus 38 ~~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik~~-----------G~~S~~L~~l~~Gd------~v~v~gP~G~ 99 (289)
T PRK08345 38 FKPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIRRA-----------GRVTTVIHRLKEGD------IVGVRGPYGN 99 (289)
T ss_pred cCCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEEeC-----------ChHHHHHHhCCCCC------EEEEeCCCCC
Confidence 457888855446555699999999863 46788877632 88999999876654 3567777776
Q ss_pred -CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEc
Q 008747 397 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 475 (555)
Q Consensus 397 -F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~S 475 (555)
|.++....+|+||||+|||||||+||++++.... ...++++|+||+|+.+ |++|++||+++++.....+++.++|
T Consensus 100 ~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~---~~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~s 175 (289)
T PRK08345 100 GFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNR---WKYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSVT 175 (289)
T ss_pred CCCcccccCceEEEEecccchhHHHHHHHHHHhcC---CCCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEec
Confidence 6665444579999999999999999999876532 1136899999999987 9999999999987766567888899
Q ss_pred cCCCC---------------cccccchhhccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 476 REGPT---------------KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 476 r~~~~---------------k~yVq~~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
|+... ++++++.+.+. .. ..+..+|+||| +.|++++.+.|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP-~~m~~~v~~~L~~~ 234 (289)
T PRK08345 176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGP-PVMYKFVFKELINR 234 (289)
T ss_pred CCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECC-HHHHHHHHHHHHHc
Confidence 85432 22333332221 11 24568999999 89999999988764
No 39
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.89 E-value=1.7e-23 Score=206.54 Aligned_cols=183 Identities=22% Similarity=0.305 Sum_probs=137.7
Q ss_pred CChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEEec
Q 008747 317 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 394 (555)
Q Consensus 317 ~p~~~ll~~~~p~-~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~~ 394 (555)
..+||++.+.+|. ...|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.|..|.
T Consensus 35 ~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP~ 98 (236)
T cd06210 35 FVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRLL---------PGGAFSTYLETRAKVGQ------RLNLRGPL 98 (236)
T ss_pred cCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEEc---------CCCccchhhhhCcCCCC------EEEEecCc
Confidence 4578888554453 35799999999863 46788777643 24889999997 55543 36677777
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|.|.++.+..+++||||+|||||||+++++++.... ...+++||||+|+.+ |.+|.++|+++.+.....+++.++
T Consensus 99 G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 173 (236)
T cd06210 99 GAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG----EPQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRICV 173 (236)
T ss_pred ceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC----CCceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEEE
Confidence 889887655679999999999999999999976532 126799999999987 999999999999876666788888
Q ss_pred ccCCC----CcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 475 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 475 Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
||+.. .++++++.+.+.. .+ ......+|+||| +.|++++++.|.+.
T Consensus 174 s~~~~~~~~~~g~~~~~l~~~l---~~-~~~~~~vyicGp-~~m~~~~~~~l~~~ 223 (236)
T cd06210 174 WRPGGEWEGYRGTVVDALREDL---AS-SDAKPDIYLCGP-PGMVDAAFAAAREA 223 (236)
T ss_pred cCCCCCcCCccCcHHHHHHHhh---cc-cCCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 87532 3566665554321 00 123578999999 89999999988763
No 40
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.89 E-value=6.4e-23 Score=218.17 Aligned_cols=169 Identities=18% Similarity=0.263 Sum_probs=127.6
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEEE
Q 008747 332 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 410 (555)
Q Consensus 332 pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~~~~F~lp~~~~~piimI 410 (555)
+|+|||+|+|. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.+..+.|.|.++.+..+|+|||
T Consensus 205 ~R~ySias~p~--~~~l~~~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP~G~f~l~~~~~~~~vlI 267 (399)
T PRK13289 205 IRQYSLSDAPN--GKYYRISVKRE---------AGGKVSNYLHDHVNVGD------VLELAAPAGDFFLDVASDTPVVLI 267 (399)
T ss_pred eeEEEeeeCCC--CCeEEEEEEEC---------CCCeehHHHhhcCCCCC------EEEEEcCccccccCCCCCCcEEEE
Confidence 59999999986 46788777543 23899999987 65543 366777889999986667899999
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCCCC----ccccc-
Q 008747 411 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT----KEYVQ- 485 (555)
Q Consensus 411 a~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~----k~yVq- 485 (555)
|+|||||||+||+++..... ...+++||||+|+.+ |++|++||+++.+.+...+++.++|++... ..|++
T Consensus 268 agGtGIaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 342 (399)
T PRK13289 268 SGGVGITPMLSMLETLAAQQ----PKRPVHFIHAARNGG-VHAFRDEVEALAARHPNLKAHTWYREPTEQDRAGEDFDSE 342 (399)
T ss_pred ecCccHHHHHHHHHHHHhcC----CCCCEEEEEEeCChh-hchHHHHHHHHHHhCCCcEEEEEECCCccccccCCccccc
Confidence 99999999999999986532 236899999999997 999999999999877556788999985321 11222
Q ss_pred chhhccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 486 HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 486 ~~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
..+. .+.+.+.+ ..+..+||||| +.|++++.+.|.+.
T Consensus 343 g~i~--~~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 380 (399)
T PRK13289 343 GLMD--LEWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLEL 380 (399)
T ss_pred Cccc--HHHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 1111 11223333 24789999999 99999999988763
No 41
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.89 E-value=4.5e-23 Score=213.86 Aligned_cols=183 Identities=16% Similarity=0.280 Sum_probs=134.5
Q ss_pred ChHHHHHHhcCC--CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEEec
Q 008747 318 PLGVFFAAIVPR--LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 394 (555)
Q Consensus 318 p~~~ll~~~~p~--~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~~ 394 (555)
-+|||+.+-++. ...|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.+..+.
T Consensus 38 ~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP~ 101 (332)
T PRK10684 38 RAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRRI---------DDGVGSQWLTRDVKRGD------YLWLSDAM 101 (332)
T ss_pred CCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEeCCc
Confidence 468887544442 23599999999863 46788888754 34889999974 55543 35677778
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|.|.++....+|+||||+|||||||+||+++..... ...+++|+||+|+++ |++|.+||+++++.....++.+..
T Consensus 102 G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~----~~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 176 (332)
T PRK10684 102 GEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR----PQADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTLVA 176 (332)
T ss_pred cccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC----CCCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEEEe
Confidence 899987666789999999999999999999876532 136899999999997 999999999999875544666666
Q ss_pred ccCCCCcccccchhhccHHHHHHHHh--CCCEEEEecCCcchHHHHHHHHHHH
Q 008747 475 SREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 475 Sr~~~~k~yVq~~l~~~~~~v~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
+++. .++|++.++.+. .+.+.+. .+..+|+||| +.|++++.+.|.+.
T Consensus 177 ~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~ 225 (332)
T PRK10684 177 ENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGP-APYMDWVEQEVKAL 225 (332)
T ss_pred ccCC-CCCccccccCHH--HHHHhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 6543 345555555431 1222221 3679999999 89999999988764
No 42
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.89 E-value=5.8e-23 Score=202.31 Aligned_cols=183 Identities=21% Similarity=0.335 Sum_probs=137.6
Q ss_pred CChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEEec
Q 008747 317 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 394 (555)
Q Consensus 317 ~p~~~ll~~~~p~~-~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~~ 394 (555)
..+||++.+.+|.. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.+..+.
T Consensus 30 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~ 93 (232)
T cd06212 30 FFAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKKY---------PGGLFSSFLDDGLAVGD------PVTVTGPY 93 (232)
T ss_pred cCCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCchhhHHhhcCCCCC------EEEEEcCc
Confidence 45788875544543 5799999999863 47788877653 24888999986 65543 36677778
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|.|.++....+++||||+|||||||++++++..... ..++++|+||+|+.. |++|.++|+++.+.....++..++
T Consensus 94 G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 168 (232)
T cd06212 94 GTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG----SDRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPAL 168 (232)
T ss_pred ccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC----CCCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEEE
Confidence 999877555689999999999999999999987542 136799999999987 999999999998765555677888
Q ss_pred ccCCC------CcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 008747 475 SREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 526 (555)
Q Consensus 475 Sr~~~------~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 526 (555)
||+.. ..+++++.+.+.. .+ ..+..+|+||| +.|++++.+.|.+.+
T Consensus 169 s~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~~~v~~CGp-~~~~~~v~~~l~~~G 220 (232)
T cd06212 169 SESPDDEGWSGETGLVTEVVQRNE---AT--LAGCDVYLCGP-PPMIDAALPVLEMSG 220 (232)
T ss_pred CCCCCCCCCcCCcccHHHHHHhhc---cC--ccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 98532 2456665443321 01 14679999999 899999999887643
No 43
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.88 E-value=1.8e-22 Score=198.61 Aligned_cols=183 Identities=19% Similarity=0.339 Sum_probs=132.6
Q ss_pred ChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEEe
Q 008747 318 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 393 (555)
Q Consensus 318 p~~~ll~~~~p---~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 393 (555)
.+||++.+.++ ...+|+|||+|.|. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..+
T Consensus 29 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP 91 (231)
T cd06191 29 RPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRV---------PGGRVSNYLREHIQPGM------TVEVMGP 91 (231)
T ss_pred CCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEEC---------CCCccchHHHhcCCCCC------EEEEeCC
Confidence 46777744332 12469999999986 47788877654 23889999984 65543 3667778
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEE
Q 008747 394 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 473 (555)
Q Consensus 394 ~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 473 (555)
.|.|.++.....++||||+||||||++|++++..... ...+++||||+|+++ |++|.+||+++.+.....++..+
T Consensus 92 ~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 166 (231)
T cd06191 92 QGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA----PESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLLCI 166 (231)
T ss_pred ccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC----CCCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEE
Confidence 8999887656689999999999999999999976532 136899999999987 99999999999886666678889
Q ss_pred EccCCCCcccccchhhccHHHHHH-HHh--CCCEEEEecCCcchHHHHHHHHHH
Q 008747 474 FSREGPTKEYVQHKMMEKSSDIWN-MLS--EGAYLYVCGDAKSMARDVHRTLHT 524 (555)
Q Consensus 474 ~Sr~~~~k~yVq~~l~~~~~~v~~-~l~--~~~~iyvCG~~~~M~~~v~~~L~~ 524 (555)
+||+.....+......-. +.+.+ ++. .++.+|+||| +.|++++.+.|.+
T Consensus 167 ~s~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~vyicGp-~~mv~~~~~~l~~ 218 (231)
T cd06191 167 FTRETLDSDLLHGRIDGE-QSLGAALIPDRLEREAFICGP-AGMMDAVETALKE 218 (231)
T ss_pred ECCCCCCccccCCccccc-HHHHHHhCccccCCeEEEECC-HHHHHHHHHHHHH
Confidence 998643222222111111 11222 222 3579999999 8999999988865
No 44
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.88 E-value=2.3e-22 Score=196.66 Aligned_cols=183 Identities=19% Similarity=0.243 Sum_probs=133.4
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhcc-CCCCcCCCCceeeEEEecC
Q 008747 317 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQS 395 (555)
Q Consensus 317 ~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~-~~~~~~~~~~~v~v~~~~~ 395 (555)
..+||++.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|.||++. .+|+ .+.+..|.|
T Consensus 24 ~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~gP~G 87 (222)
T cd06194 24 YLPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRRK---------PNGAFSGWLGEEARPGH------ALRLQGPFG 87 (222)
T ss_pred cCCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEec---------cCCccchHHHhccCCCC------EEEEecCcC
Confidence 457888865556667899999999863 36788777543 248899999985 4543 366777778
Q ss_pred CCCCCC-CCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 396 NFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 396 ~F~lp~-~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
.|.+.. ...++++|||+|||||||+++++++.... ..++++||||+|+.+ |++|++||+++.+.....+++.+.
T Consensus 88 ~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 162 (222)
T cd06194 88 QAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG----HQGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIPCV 162 (222)
T ss_pred CeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC----CCccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEEEE
Confidence 876643 45679999999999999999999986532 136899999999997 899999999998765555788888
Q ss_pred ccCCCCc-ccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 475 SREGPTK-EYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 475 Sr~~~~k-~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
+++.... ++..+.+.+. +. .+..+..+|+||| +.|++++++.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~---~~-~~~~~~~vyicGp-~~m~~~~~~~L~~~ 209 (222)
T cd06194 163 SEGSQGDPRVRAGRIAAH---LP-PLTRDDVVYLCGA-PSMVNAVRRRAFLA 209 (222)
T ss_pred ccCCCCCcccccchhhhh---hc-cccCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 8854322 1111111111 11 1235789999999 89999999998764
No 45
>PRK05713 hypothetical protein; Provisional
Probab=99.88 E-value=1.4e-22 Score=208.42 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=127.9
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecC-
Q 008747 317 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS- 395 (555)
Q Consensus 317 ~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~- 395 (555)
..+|||+.+.++....|+|||||.|.. .+.++|+|+.+ ..|.+|.||.++.+|+. +.+..+.|
T Consensus 119 ~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~---------~~G~~s~~l~~l~~Gd~------v~l~~p~gg 182 (312)
T PRK05713 119 YRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCS---------RPGAFCDAARQLQVGDL------LRLGELRGG 182 (312)
T ss_pred cCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEc---------CCCccchhhhcCCCCCE------EEEccCCCC
Confidence 346888754445556799999999863 46788877643 34888999987766543 45555554
Q ss_pred CCCCCCC-CCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 396 NFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 396 ~F~lp~~-~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
.|.++.+ ..+|+||||+|||||||+|++++..... ..++++|+||+|+.+ |++|.+||++|.+.....++..+.
T Consensus 183 ~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~----~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 257 (312)
T PRK05713 183 ALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG----HQGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVELVT 257 (312)
T ss_pred ceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC----CCCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEEEE
Confidence 5556544 4689999999999999999999876542 136899999999997 999999999998765555676666
Q ss_pred ccCCCCcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 475 SREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 475 Sr~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
++ ++++.+.+. .. ...+..+|+||| ++|++++.+.|.+.
T Consensus 258 ~~------~~~~~l~~~----~~-~~~~~~vyiCGp-~~mv~~~~~~L~~~ 296 (312)
T PRK05713 258 AA------QLPAALAEL----RL-VSRQTMALLCGS-PASVERFARRLYLA 296 (312)
T ss_pred Cc------chhhhhhhc----cC-CCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 53 233333221 00 124578999999 99999999998763
No 46
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.88 E-value=1.8e-22 Score=198.14 Aligned_cols=178 Identities=24% Similarity=0.367 Sum_probs=133.5
Q ss_pred ChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEEecC
Q 008747 318 PLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQS 395 (555)
Q Consensus 318 p~~~ll~~~~p~~-~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~~~ 395 (555)
.+||++.+.+|.. ..|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.+..|.|
T Consensus 29 ~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~G 92 (227)
T cd06213 29 KAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRKV---------PGGAFSGWLFGADRTGE------RLTVRGPFG 92 (227)
T ss_pred CCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCcchHHHHhcCCCCC------EEEEeCCCc
Confidence 4688875544543 4799999999863 47788877643 23888999966 44443 366777788
Q ss_pred CCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHc-CCcceEEEEE
Q 008747 396 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQLIVAF 474 (555)
Q Consensus 396 ~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~-~~~~~l~~a~ 474 (555)
.|.++. ..+++||||+|||||||+++++++.... ...+++|+||+|+++ |.+|.++|+++++. ....+++.++
T Consensus 93 ~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~ 166 (227)
T cd06213 93 DFWLRP-GDAPILCIAGGSGLAPILAILEQARAAG----TKRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIPVL 166 (227)
T ss_pred ceEeCC-CCCcEEEEecccchhHHHHHHHHHHhcC----CCCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEEEe
Confidence 998864 3578999999999999999999986532 236799999999997 99999999999865 3444677788
Q ss_pred ccCCC------CcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 475 SREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 475 Sr~~~------~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
|++.. ..+++++.+.+. +..+..+|+||| +.|++++.+.|.+.
T Consensus 167 s~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp-~~~~~~~~~~l~~~ 215 (227)
T cd06213 167 SEEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGP-PAMIDAAIAVLRAL 215 (227)
T ss_pred cCCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 87532 235666655432 235789999999 89999999988763
No 47
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.87 E-value=3.1e-22 Score=199.65 Aligned_cols=182 Identities=20% Similarity=0.308 Sum_probs=136.3
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecC
Q 008747 316 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 395 (555)
Q Consensus 316 ~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~ 395 (555)
+..+||++.+.+|....|+|||+|+|.. .+.++|+|+. .|..|+||+++.+|+ .+.+..|.|
T Consensus 27 ~~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G~------~v~i~gP~G 88 (253)
T cd06221 27 TFKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPGD------TVGLRGPFG 88 (253)
T ss_pred CcCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCCC------EEEEECCcC
Confidence 3457888765556555699999999963 4678887753 278899999775543 356777767
Q ss_pred C-CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 396 N-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 396 ~-F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
. |.++....+|+||||+||||||+++|+++..... ...++++|+|+.|+.+ |++|+++|+++.+. ...++..++
T Consensus 89 ~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~---~~~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~~ 163 (253)
T cd06221 89 NGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNR---EDYGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILTV 163 (253)
T ss_pred CCcccccccCCeEEEEccccchhHHHHHHHHHHhcc---ccCCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEEe
Confidence 7 6655435689999999999999999999987642 1136899999999997 99999999999987 444788888
Q ss_pred ccCCC----CcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 008747 475 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 526 (555)
Q Consensus 475 Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 526 (555)
||+.. ..+++++.+.+... ...+..||+||| +.|++++.+.|.+..
T Consensus 164 s~~~~~~~~~~g~v~~~l~~~~~-----~~~~~~vyicGp-~~mv~~~~~~L~~~G 213 (253)
T cd06221 164 DRAEEGWTGNVGLVTDLLPELTL-----DPDNTVAIVCGP-PIMMRFVAKELLKLG 213 (253)
T ss_pred CCCCCCccCCccccchhHHhcCC-----CcCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 87542 34677765544210 025679999999 999999999887643
No 48
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.87 E-value=1.2e-21 Score=194.71 Aligned_cols=166 Identities=20% Similarity=0.327 Sum_probs=126.1
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEE
Q 008747 331 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 409 (555)
Q Consensus 331 ~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~~~~F~lp~~~~~piim 409 (555)
..|+|||+|.|.. +.++|+|+.+ ..|.+|.||++ +.+|+ .+.|..+.|.|.++.+..+++||
T Consensus 56 ~~R~ySi~s~~~~--~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP~G~~~~~~~~~~~lll 118 (247)
T cd06184 56 QIRQYSLSDAPNG--DYYRISVKRE---------PGGLVSNYLHDNVKVGD------VLEVSAPAGDFVLDEASDRPLVL 118 (247)
T ss_pred eeEEeEeccCCCC--CeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEEcCCCceECCCCCCCcEEE
Confidence 4699999999863 4677766532 24889999998 65554 35677777889987655689999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCCCC--------c
Q 008747 410 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT--------K 481 (555)
Q Consensus 410 Ia~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~--------k 481 (555)
||+|||||||+++++++.... ...+++||||+|+++ +.+|+++|+++.+.....+++.++|++... .
T Consensus 119 iagGtGiaP~~~~l~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 193 (247)
T cd06184 119 ISAGVGITPMLSMLEALAAEG----PGRPVTFIHAARNSA-VHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHA 193 (247)
T ss_pred EeccccHhHHHHHHHHHHhcC----CCCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeEEEEEECCCCccccccccccc
Confidence 999999999999999987531 136899999999997 899999999998875556788899986432 2
Q ss_pred ccccchhhccHHHHHHH-HhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 482 EYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 482 ~yVq~~l~~~~~~v~~~-l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
++++.. .+.+. ...+..+|+||| +.|++++++.|.+.
T Consensus 194 g~~~~~------~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~ 231 (247)
T cd06184 194 GRIDLA------LLRELLLPADADFYLCGP-VPFMQAVREGLKAL 231 (247)
T ss_pred CccCHH------HHhhccCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 333321 22221 245789999999 89999999988763
No 49
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.86 E-value=1e-21 Score=194.83 Aligned_cols=180 Identities=23% Similarity=0.356 Sum_probs=132.6
Q ss_pred hHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEEec
Q 008747 319 LGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 394 (555)
Q Consensus 319 ~~~ll~~~~p---~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~~ 394 (555)
+||++.+.+| ...+|+|||+|.|....+.++|+|+.+ ..|.+|.||++ +.+|+ .+.+..+.
T Consensus 48 pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP~ 112 (243)
T cd06216 48 AGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQ---------PDGLVSNWLVNHLAPGD------VVELSQPQ 112 (243)
T ss_pred CCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEECCc
Confidence 5666543322 124699999998852247788887654 23888999986 54543 35677777
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|.|.++.+..+++||||+||||||++|++++..... ..++++||||+|+.+ |.+|.+||+++.++....+++..+
T Consensus 113 G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 187 (243)
T cd06216 113 GDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG----PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLHLLY 187 (243)
T ss_pred eeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC----CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEEEEE
Confidence 889988765689999999999999999999986532 236899999999987 999999999998765555788888
Q ss_pred ccCCCCcccccchhhccHHHHHHHH--hCCCEEEEecCCcchHHHHHHHHHHHH
Q 008747 475 SREGPTKEYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTIV 526 (555)
Q Consensus 475 Sr~~~~k~yVq~~l~~~~~~v~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i~ 526 (555)
|++ ...+++...+ +.+.+ ..+..+|+||| +.|++++.+.|++..
T Consensus 188 s~~-~~~g~~~~~~------l~~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~~G 233 (243)
T cd06216 188 TRE-ELDGRLSAAH------LDAVVPDLADRQVYACGP-PGFLDAAEELLEAAG 233 (243)
T ss_pred cCC-ccCCCCCHHH------HHHhccCcccCeEEEECC-HHHHHHHHHHHHHCC
Confidence 876 3345554322 12222 23579999999 899999999987744
No 50
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.86 E-value=1.3e-21 Score=204.80 Aligned_cols=187 Identities=19% Similarity=0.324 Sum_probs=131.8
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEEE
Q 008747 317 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 392 (555)
Q Consensus 317 ~p~~~ll~~~~p---~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~ 392 (555)
..+|||+.+.+| ....|+|||+|+|. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.+..
T Consensus 33 ~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~---------~~G~~S~~l~~~l~~Gd------~v~v~g 95 (352)
T TIGR02160 33 FAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKI---------PGGLFSTWANDEIRPGD------TLEVMA 95 (352)
T ss_pred CCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEe---------CCCcchHHHHhcCCCCC------EEEEeC
Confidence 347888855443 12369999999984 46788888754 23889999974 54443 356766
Q ss_pred ecCCCCCCCCC--CCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCC-cce
Q 008747 393 RQSNFKLPADA--KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQ 469 (555)
Q Consensus 393 ~~~~F~lp~~~--~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~-~~~ 469 (555)
+.|.|.++.+. .+++||||+|||||||+||+++..... ...+++|+||+|+++ |++|.+||+++++... ..+
T Consensus 96 P~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 170 (352)
T TIGR02160 96 PQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE----PRSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRFH 170 (352)
T ss_pred CceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC----CCceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcEE
Confidence 77889876542 378999999999999999999976532 136899999999997 9999999999987654 347
Q ss_pred EEEEEccCCCCcccccchhhc-cHH-HHHHHH--hCCCEEEEecCCcchHHHHHHHHHHHH
Q 008747 470 LIVAFSREGPTKEYVQHKMME-KSS-DIWNML--SEGAYLYVCGDAKSMARDVHRTLHTIV 526 (555)
Q Consensus 470 l~~a~Sr~~~~k~yVq~~l~~-~~~-~v~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i~ 526 (555)
++.++||+.....+.+.++.. ... .+.++. .....+|+||| +.|++++++.|.+..
T Consensus 171 ~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~G 230 (352)
T TIGR02160 171 LAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGLG 230 (352)
T ss_pred EEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 888889864322222222211 111 111111 23468999999 899999999998753
No 51
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.86 E-value=4.7e-21 Score=188.48 Aligned_cols=181 Identities=19% Similarity=0.324 Sum_probs=130.8
Q ss_pred CChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhh-ccCCCCcCCCCceeeEEE
Q 008747 317 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 392 (555)
Q Consensus 317 ~p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~v~v~~ 392 (555)
..+||++.+.+|. ...|+|||+|.|.. .+.++|+|+.. ..|.+|.||+ ++.+|+ .+.+..
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~~~~G~------~v~i~g 91 (231)
T cd06215 28 YKPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRV---------PGGLVSNWLHDNLKVGD------ELWASG 91 (231)
T ss_pred cCCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEEc
Confidence 3467776443332 23699999999863 45688877644 2388999997 455543 356777
Q ss_pred ecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEE
Q 008747 393 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 472 (555)
Q Consensus 393 ~~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~ 472 (555)
+.|.|.++.....++||||+|||||||++++++..... ...+++||||+|+++ |++|.++|+++.++....++..
T Consensus 92 P~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~ 166 (231)
T cd06215 92 PAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR----PDADIVFIHSARSPA-DIIFADELEELARRHPNFRLHL 166 (231)
T ss_pred CcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC----CCCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEEEE
Confidence 77889887555689999999999999999999976532 136799999999997 9999999999988655456777
Q ss_pred EEccCCC-----CcccccchhhccHHHHHHHHh--CCCEEEEecCCcchHHHHHHHHHHH
Q 008747 473 AFSREGP-----TKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 473 a~Sr~~~-----~k~yVq~~l~~~~~~v~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
+.+++.. ..+++...+ +.+.+. .+..+|+||| +.|++++.+.|.+.
T Consensus 167 ~~~~~~~~~~~~~~g~~~~~~------l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~~ 219 (231)
T cd06215 167 ILEQPAPGAWGGYRGRLNAEL------LALLVPDLKERTVFVCGP-AGFMKAVKSLLAEL 219 (231)
T ss_pred EEccCCCCcccccCCcCCHHH------HHHhcCCccCCeEEEECC-HHHHHHHHHHHHHc
Confidence 8887543 123333211 222221 3468999999 99999999988653
No 52
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.86 E-value=1.1e-21 Score=191.04 Aligned_cols=175 Identities=21% Similarity=0.314 Sum_probs=128.6
Q ss_pred CChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhh-ccCCCCcCCCCceeeEEE
Q 008747 317 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 392 (555)
Q Consensus 317 ~p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~v~v~~ 392 (555)
..+||++.+.+|. ...|+|||+|.|.. .+.++|+|+.+ |.+|.+|. ++.+|+ .+.+..
T Consensus 23 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~-----------G~~t~~l~~~l~~G~------~v~i~g 84 (216)
T cd06198 23 HRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKAL-----------GDYTRRLAERLKPGT------RVTVEG 84 (216)
T ss_pred cCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEeC-----------ChHHHHHHHhCCCCC------EEEEEC
Confidence 3478887554443 56899999999863 46888877632 77899999 565543 356777
Q ss_pred ecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEE
Q 008747 393 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 472 (555)
Q Consensus 393 ~~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~ 472 (555)
+.|.|.++.. .++++|||+||||||+++++++..... ..++++|+||+|+++ |.+|.++|+++.+.. ..+++.
T Consensus 85 P~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~~~ 157 (216)
T cd06198 85 PYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG----DARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVLHV 157 (216)
T ss_pred CCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC----CCceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEEEE
Confidence 7888988765 689999999999999999999986532 136899999999997 999999999998776 445666
Q ss_pred EEccCCCCcccccchhhccHHHHHHHH--hCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 473 AFSREGPTKEYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 473 a~Sr~~~~k~yVq~~l~~~~~~v~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
..++... .......+ .+.. ..+..+|+||| +.|++++++.|.+.
T Consensus 158 ~~~~~~~-~~~~~~~~-------~~~~~~~~~~~vyicGp-~~m~~~v~~~l~~~ 203 (216)
T cd06198 158 IDSPSDG-RLTLEQLV-------RALVPDLADADVWFCGP-PGMADALEKGLRAL 203 (216)
T ss_pred EeCCCCc-ccchhhhh-------hhcCCCcCCCeEEEECc-HHHHHHHHHHHHHc
Confidence 6554322 11111111 0111 24679999999 89999999988764
No 53
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.85 E-value=2.1e-21 Score=192.89 Aligned_cols=172 Identities=20% Similarity=0.291 Sum_probs=127.7
Q ss_pred CChHHHHHHhcCC----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEE
Q 008747 317 PPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 392 (555)
Q Consensus 317 ~p~~~ll~~~~p~----~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 392 (555)
..+||++.+.+|. ...|+|||+|.|.. .+.++|+|+.. |.+|+||.++.+|+ .+.+..
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~Gd------~v~i~g 86 (246)
T cd06218 25 AKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKAGD------ELDVLG 86 (246)
T ss_pred CCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCCCC------EEEEEe
Confidence 3468877554443 35799999998852 46788877643 77899999876654 366777
Q ss_pred ecCC-CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEE
Q 008747 393 RQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 471 (555)
Q Consensus 393 ~~~~-F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~ 471 (555)
|.|. |.++. ...++||||+|||||||+|++++.... ..+++||||+|+.+ |.+|++||+++.. ++.
T Consensus 87 P~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~~------~~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~~ 153 (246)
T cd06218 87 PLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAER------GIKVTVLLGFRSAD-DLFLVEEFEALGA-----EVY 153 (246)
T ss_pred cCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHhc------CCceEEEEEccchh-hhhhHHHHHhhCC-----cEE
Confidence 7775 77764 568999999999999999999987652 26899999999997 9999999998853 222
Q ss_pred EEEccCC--CCcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 008747 472 VAFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 526 (555)
Q Consensus 472 ~a~Sr~~--~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 526 (555)
. ++++. ..++||++.+.+.... ..+..||+||| +.|++++++.|.+..
T Consensus 154 ~-~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp-~~mv~~~~~~L~~~G 203 (246)
T cd06218 154 V-ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGP-EPMLKAVAELAAERG 203 (246)
T ss_pred E-EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 2 23332 2457888866553211 14789999999 899999999997754
No 54
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.85 E-value=2.9e-21 Score=191.19 Aligned_cols=185 Identities=23% Similarity=0.353 Sum_probs=132.0
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhh-ccCCCCcCCCCceeeEE
Q 008747 316 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 391 (555)
Q Consensus 316 ~~p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~v~v~ 391 (555)
...+||++.+.+|. ..+|+|||+|.|.. +.++|.|+.+ ..|.+|.||. ++.+|+ .+.+.
T Consensus 32 ~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~ 94 (241)
T cd06214 32 RYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRV---------PGGRFSNWANDELKAGD------TLEVM 94 (241)
T ss_pred CcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEc---------CCCccchhHHhccCCCC------EEEEe
Confidence 34578988655442 36799999998863 3688777644 2488999998 455543 36677
Q ss_pred EecCCCCCCCC-CCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCC-cce
Q 008747 392 VRQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQ 469 (555)
Q Consensus 392 ~~~~~F~lp~~-~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~-~~~ 469 (555)
.+.|.|.++.+ ...++||||+|||||||+++++++.... ..++++|+||+|+.. |++|.+||+++.+... ..+
T Consensus 95 gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 169 (241)
T cd06214 95 PPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE----PASRVTLVYGNRTEA-SVIFREELADLKARYPDRLT 169 (241)
T ss_pred CCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC----CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceE
Confidence 77788988765 5689999999999999999999977532 136899999999997 9999999999976643 345
Q ss_pred EEEEEccCCCC----cccccchhhccHHHHHHHH--hCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 470 LIVAFSREGPT----KEYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 470 l~~a~Sr~~~~----k~yVq~~l~~~~~~v~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
+..++|+++.. .+.+...+... .+.+.+ .++..||+||| +.|++++.+.|++.
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~~ 228 (241)
T cd06214 170 VIHVLSREQGDPDLLRGRLDAAKLNA--LLKNLLDATEFDEAFLCGP-EPMMDAVEAALLEL 228 (241)
T ss_pred EEEEecCCCCCcccccCccCHHHHHH--hhhhhcccccCcEEEEECC-HHHHHHHHHHHHHc
Confidence 66788875432 22332221111 111111 24679999999 89999999988763
No 55
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.85 E-value=1.5e-21 Score=195.76 Aligned_cols=176 Identities=19% Similarity=0.255 Sum_probs=129.1
Q ss_pred ChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCC-
Q 008747 318 PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN- 396 (555)
Q Consensus 318 p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~- 396 (555)
-+|||+.+-+|...+|+|||++.+ .+.++|+|+.+ |.+|+||.++.+|+. +.+..+.|.
T Consensus 34 ~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~~-----------G~~S~~L~~l~~Gd~------v~v~gP~G~~ 93 (263)
T PRK08221 34 KPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRRV-----------GKVTDEIFNLKEGDK------LFLRGPYGNG 93 (263)
T ss_pred CCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEeC-----------CchhhHHHhCCCCCE------EEEECCCCCC
Confidence 478888655576667999999975 36788777532 889999998766543 556666666
Q ss_pred CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEcc
Q 008747 397 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 476 (555)
Q Consensus 397 F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr 476 (555)
|.++....+|+||||+|||||||+|++++..... ...++++||||+|+.+ |++|++||++|.+.. .+..++++
T Consensus 94 f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~---~~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~~~ 166 (263)
T PRK08221 94 FPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENP---QEIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTLDE 166 (263)
T ss_pred cccCccCCccEEEEcccccHHHHHHHHHHHHhCc---ccCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEecC
Confidence 7776555689999999999999999999976432 1235899999999997 999999999998753 24555665
Q ss_pred CCC----CcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 477 EGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 477 ~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
... ..+++++.+.+.. .. -..+..+|+||| +.|++++.+.|.+.
T Consensus 167 ~~~~~~~~~G~v~~~l~~~~---~~-~~~~~~vylCGp-~~mv~~~~~~L~~~ 214 (263)
T PRK08221 167 GEEGYRGNVGLVTKYIPELT---LK-DIDNMQVIVVGP-PIMMKFTVLEFLKR 214 (263)
T ss_pred CCCCCccCccccChhhHhcc---CC-CcCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 322 3456665443310 00 014678999999 99999999998764
No 56
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.85 E-value=5.3e-21 Score=186.49 Aligned_cols=176 Identities=19% Similarity=0.289 Sum_probs=127.4
Q ss_pred CChHHHHHHhcCC----CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEE
Q 008747 317 PPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 392 (555)
Q Consensus 317 ~p~~~ll~~~~p~----~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 392 (555)
..+||++.+.++. ...|+|||+|+|. .+.++|+|+.+ + ..|..|.||.++.+|+. +.+..
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~----~----~~g~~s~~l~~l~~G~~------v~i~g 91 (218)
T cd06196 28 FTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSY----P----DHDGVTEQLGRLQPGDT------LLIED 91 (218)
T ss_pred CCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEc----C----CCCcHhHHHHhCCCCCE------EEEEC
Confidence 4567777443332 3579999999986 37788877653 1 12567999998876543 56777
Q ss_pred ecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEE
Q 008747 393 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 472 (555)
Q Consensus 393 ~~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~ 472 (555)
+.|.|.++ .|+||||+|||||||+|+++++.... ...+++|+||+|+.+ |++|.+||+++.. .++..
T Consensus 92 P~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~~~ 158 (218)
T cd06196 92 PWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKG----KLEGNTLIFANKTEK-DIILKDELEKMLG----LKFIN 158 (218)
T ss_pred CccceEec----CceEEEecCCCcChHHHHHHHHHhCC----CCceEEEEEecCCHH-HHhhHHHHHHhhc----ceEEE
Confidence 77888753 57999999999999999999987532 135799999999987 9999999999853 25667
Q ss_pred EEccCCCCcccccchhhccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 473 AFSREGPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 473 a~Sr~~~~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
++||+.. .+|.+..+.+ +.+.+++ ..+..+|+||| +.|++++.+.|.+.
T Consensus 159 ~~s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~ 208 (218)
T cd06196 159 VVTDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGP-PPMEEAINGALKEL 208 (218)
T ss_pred EEcCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 8888643 3444544432 2233333 23579999999 89999999988764
No 57
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.85 E-value=1.7e-21 Score=192.16 Aligned_cols=181 Identities=21% Similarity=0.347 Sum_probs=132.8
Q ss_pred CChHHHHHHhcC--CC--cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhc-cCCCCcCCCCceeeEE
Q 008747 317 PPLGVFFAAIVP--RL--QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIF 391 (555)
Q Consensus 317 ~p~~~ll~~~~p--~~--~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~ 391 (555)
..+||++.+.+| .. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|.||.+ +.+|+ .+.+.
T Consensus 31 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~---------~~G~~s~~l~~~l~~Gd------~v~i~ 94 (235)
T cd06217 31 FLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRV---------PGGEVSPYLHDEVKVGD------LLEVR 94 (235)
T ss_pred cCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEe
Confidence 346888755443 22 2499999999863 46788887654 23889999987 44543 36677
Q ss_pred EecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEE
Q 008747 392 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 471 (555)
Q Consensus 392 ~~~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~ 471 (555)
.|.|.|.++....++++|||+||||||+++++++..... ...+++|+||+|+.+ |.+|.+||.++.+.....+++
T Consensus 95 gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~~ 169 (235)
T cd06217 95 GPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG----WPVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHVT 169 (235)
T ss_pred CCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC----CCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEE
Confidence 777888876544678999999999999999999987542 136799999999987 899999999998865545788
Q ss_pred EEEccCCC-----CcccccchhhccHHHHHHHH--hCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 472 VAFSREGP-----TKEYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 472 ~a~Sr~~~-----~k~yVq~~l~~~~~~v~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
.++||+.. .++++.+.+.+ +.+ ..+..+|+||| +.|++++.+.|.+.
T Consensus 170 ~~~s~~~~~~~~~~~g~~~~~~l~------~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~ 223 (235)
T cd06217 170 EALTRAAPADWLGPAGRITADLIA------ELVPPLAGRRVYVCGP-PAFVEAATRLLLEL 223 (235)
T ss_pred EEeCCCCCCCcCCcCcEeCHHHHH------hhCCCccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 88888621 23444433221 111 24689999999 89999999988764
No 58
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.85 E-value=7.2e-21 Score=195.32 Aligned_cols=167 Identities=12% Similarity=0.197 Sum_probs=118.4
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEEE
Q 008747 331 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 410 (555)
Q Consensus 331 ~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~F~lp~~~~~piimI 410 (555)
..|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+++.+|+. +.+..+.+.|.++.+..+|+|||
T Consensus 102 ~~R~YSiaS~p~~-~~~le~~IK~~---------~~G~~S~~L~~lk~Gd~------v~v~GP~f~~~~~~~~~~~lvlI 165 (325)
T PTZ00274 102 CQRFYTPVTANHT-KGYFDIIVKRK---------KDGLMTNHLFGMHVGDK------LLFRSVTFKIQYRPNRWKHVGMI 165 (325)
T ss_pred EEEeeecCCCCCC-CCeEEEEEEEc---------CCCcccHHHhcCCCCCE------EEEeCCeeecccCCCCCceEEEE
Confidence 3599999999963 47899888754 34889999998766543 34433333444444445799999
Q ss_pred ccCCccchhHHHHHHHHHHHhh--cCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCC-cceEEEEEccCCC------Cc
Q 008747 411 GPGTGLAPFRGFLQERFALQEA--GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP------TK 481 (555)
Q Consensus 411 a~GTGiAPf~s~l~~~~~~~~~--~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~-~~~l~~a~Sr~~~------~k 481 (555)
|+|||||||+||+++....... .....+++|+||+|+.+ |++|++||+++++... ..+++.++|++.. ..
T Consensus 166 AGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~ 244 (325)
T PTZ00274 166 AGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFL 244 (325)
T ss_pred eCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCC
Confidence 9999999999999987654211 11235899999999997 9999999999987654 4578888886421 24
Q ss_pred ccccchhhccHHHHHHHHh----CCCEEEEecCCcchHHHHHHH
Q 008747 482 EYVQHKMMEKSSDIWNMLS----EGAYLYVCGDAKSMARDVHRT 521 (555)
Q Consensus 482 ~yVq~~l~~~~~~v~~~l~----~~~~iyvCG~~~~M~~~v~~~ 521 (555)
++|.+.+.. +.+. .+..+|+||| +.|+++|...
T Consensus 245 G~V~~~ll~------~~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 245 GYVTKEMVR------RTMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred CccCHHHHH------HhcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 566554322 1121 2257999999 8999998554
No 59
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.85 E-value=6.1e-21 Score=190.12 Aligned_cols=180 Identities=18% Similarity=0.305 Sum_probs=128.3
Q ss_pred ChHHHHHHhcCCC---cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhh-ccCCCCcCCCCceeeEEEe
Q 008747 318 PLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 393 (555)
Q Consensus 318 p~~~ll~~~~p~~---~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~v~v~~~ 393 (555)
-+||++.+-++.- ..|.|||+|+|.. ++.+.|+|+.. ..|..|+||+ ++.+|+ .+.+..+
T Consensus 36 ~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~~---------~~G~~S~~Lh~~lk~Gd------~l~v~~P 99 (266)
T COG1018 36 EPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKRE---------DGGGGSNWLHDHLKVGD------TLEVSAP 99 (266)
T ss_pred CCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEEe---------CCCcccHHHHhcCCCCC------EEEEecC
Confidence 4678876555533 5799999999974 35777777644 2288899999 555543 3677777
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEE
Q 008747 394 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 473 (555)
Q Consensus 394 ~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 473 (555)
.|.|.++..+..|++|||+|||||||+||++...... . .++.|+|++|+++ |..|+|| +.+............
T Consensus 100 ~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~----~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~~~ 172 (266)
T COG1018 100 AGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG----P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLLGL 172 (266)
T ss_pred CCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC----C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeEEE
Confidence 8999998766779999999999999999999976542 2 6799999999997 9999999 888776553223333
Q ss_pred EccCCCCcccccchhhccHHHHHHHHhCC-CEEEEecCCcchHHHHHHHHHHHHH
Q 008747 474 FSREGPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQ 527 (555)
Q Consensus 474 ~Sr~~~~k~yVq~~l~~~~~~v~~~l~~~-~~iyvCG~~~~M~~~v~~~L~~i~~ 527 (555)
+.......+|..-.. +...+... ..+|+||| .+|+++|+..|.++..
T Consensus 173 ~~~~~~~~g~~~~~~------l~~~~~~~~r~~y~CGp-~~fm~av~~~l~~~g~ 220 (266)
T COG1018 173 YTERGKLQGRIDVSR------LLSAAPDGGREVYLCGP-GPFMQAVRLALEALGV 220 (266)
T ss_pred EEecCCccccccHHH------HhccCCCCCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 321111222222111 11122223 89999999 8999999999977654
No 60
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.85 E-value=4.3e-21 Score=188.98 Aligned_cols=182 Identities=19% Similarity=0.287 Sum_probs=134.0
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEE
Q 008747 316 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 392 (555)
Q Consensus 316 ~~p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 392 (555)
...+||++.+.+|. ...|+|||+|++.. .+.++|+|+.+ ..|.+|.||+++.+|+ .+.+..
T Consensus 28 ~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~---------~~G~~s~~l~~~~~G~------~v~i~g 91 (234)
T cd06183 28 GLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIY---------PGGKMSQYLHSLKPGD------TVEIRG 91 (234)
T ss_pred CCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEEC---------CCCcchhHHhcCCCCC------EEEEEC
Confidence 34578887554453 45799999998863 45788777643 2488999999876654 356777
Q ss_pred ecCCCCCCCCCC-CCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcC-CcceE
Q 008747 393 RQSNFKLPADAK-VPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQL 470 (555)
Q Consensus 393 ~~~~F~lp~~~~-~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~-~~~~l 470 (555)
+.|.|.++.+.. .++||||+||||||+++++++..... ....+++|+||+|+.+ +.+|.+||+++.+.. ...++
T Consensus 92 P~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~---~~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~ 167 (234)
T cd06183 92 PFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDP---EDKTKISLLYANRTEE-DILLREELDELAKKHPDRFKV 167 (234)
T ss_pred CccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCc---CcCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEEE
Confidence 778898865554 78999999999999999999986532 1136899999999987 899999999998762 33467
Q ss_pred EEEEccCCC----CcccccchhhccHHHHHHHHh----CCCEEEEecCCcchHH-HHHHHHHH
Q 008747 471 IVAFSREGP----TKEYVQHKMMEKSSDIWNMLS----EGAYLYVCGDAKSMAR-DVHRTLHT 524 (555)
Q Consensus 471 ~~a~Sr~~~----~k~yVq~~l~~~~~~v~~~l~----~~~~iyvCG~~~~M~~-~v~~~L~~ 524 (555)
..++++.+. ..+++++.+.+ +.+. .+..+|+||| +.|++ ++++.|.+
T Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~l~------~~~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~ 223 (234)
T cd06183 168 HYVLSRPPEGWKGGVGFITKEMIK------EHLPPPPSEDTLVLVCGP-PPMIEGAVKGLLKE 223 (234)
T ss_pred EEEEcCCCcCCccccceECHHHHH------HhCCCCCCCCeEEEEECC-HHHHHHHHHHHHHH
Confidence 777887532 24566644322 1222 4578999999 89999 99988865
No 61
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.84 E-value=3.8e-21 Score=192.63 Aligned_cols=177 Identities=17% Similarity=0.211 Sum_probs=128.4
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCC
Q 008747 317 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 396 (555)
Q Consensus 317 ~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~ 396 (555)
.-+||++.+.+|...+|+|||+|.+ .+.++|+|+.+ |.+|++|.++.+|+ .+.+..+.|.
T Consensus 31 ~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~~-----------G~~S~~L~~l~~Gd------~v~i~gP~G~ 90 (261)
T TIGR02911 31 VKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRRV-----------GKVTDEVFTLKEGD------NLFLRGPYGN 90 (261)
T ss_pred CCCCcEEEEEecCCCccceecCCCC---CCeEEEEEEeC-----------chhhHHHHcCCCCC------EEEEecCCCC
Confidence 3478888655576678999999853 46788877532 88999999876654 3567777676
Q ss_pred -CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEc
Q 008747 397 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 475 (555)
Q Consensus 397 -F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~S 475 (555)
|.++.+..+|++|||+||||||++|++++..... ...++++||||+|+.+ |++|.+||+++.+.. .+...++
T Consensus 91 ~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~---~~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~~ 163 (261)
T TIGR02911 91 GFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNP---KEIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTLD 163 (261)
T ss_pred CcccCccCCceEEEEecccCcHHHHHHHHHHHhCc---ccCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEEc
Confidence 8776555689999999999999999999876432 1235799999999997 999999999998753 2344455
Q ss_pred cCCC----CcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 476 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 476 r~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
++.. ..+++++.+.+.. +.+ ..+..+|+||| +.|++++.+.|.+.
T Consensus 164 ~~~~~~~~~~g~v~~~l~~~~--~~~--~~~~~v~lCGp-~~mv~~~~~~L~~~ 212 (261)
T TIGR02911 164 EAEEDYKGNIGLVTKYIPELT--LKD--IEEVQAIVVGP-PIMMKFTVQELLKK 212 (261)
T ss_pred CCCCCCcCCeeccCHhHHhcc--CCC--ccceEEEEECC-HHHHHHHHHHHHHc
Confidence 4321 2456665443310 001 13578999999 99999999988774
No 62
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.84 E-value=1.2e-20 Score=182.91 Aligned_cols=174 Identities=20% Similarity=0.281 Sum_probs=125.6
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCC
Q 008747 317 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 396 (555)
Q Consensus 317 ~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~ 396 (555)
..+||++.+.+|....|+|||+|.|.. .+.++|+|+.+ +. .+.+|.||....+.++ .+.+..+.|.
T Consensus 26 ~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~----~~----g~~~s~~l~~~~~~Gd-----~v~i~gP~g~ 91 (211)
T cd06185 26 FEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLRE----PA----SRGGSRYMHELLRVGD-----ELEVSAPRNL 91 (211)
T ss_pred CCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEec----cC----CCchHHHHHhcCCCCC-----EEEEcCCccC
Confidence 457888865556667899999999863 47788877644 11 1347999986544333 3667777888
Q ss_pred CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEcc
Q 008747 397 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 476 (555)
Q Consensus 397 F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr 476 (555)
|.++.+ .+|+||||+||||||+++++++.... ..+++|+||+|+.+ |.+|.++|+++. . . .+.+.+++
T Consensus 92 f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~~------~~~v~l~~~~r~~~-~~~~~~~l~~~~-~-~--~~~~~~~~ 159 (211)
T cd06185 92 FPLDEA-ARRHLLIAGGIGITPILSMARALAAR------GADFELHYAGRSRE-DAAFLDELAALP-G-D--RVHLHFDD 159 (211)
T ss_pred CcCCCC-CCcEEEEeccchHhHHHHHHHHHHhC------CCCEEEEEEeCCCc-chhHHHHHhhhc-C-C--cEEEEECC
Confidence 988643 67999999999999999999987542 25799999999987 889999999987 2 1 34455665
Q ss_pred CCCCcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 008747 477 EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 526 (555)
Q Consensus 477 ~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 526 (555)
.. ...++++.+.. +..+..+|+||| +.|++++++.|.+..
T Consensus 160 ~~-~~~~~~~~~~~--------~~~~~~vyicGp-~~m~~~~~~~l~~~g 199 (211)
T cd06185 160 EG-GRLDLAALLAA--------PPAGTHVYVCGP-EGMMDAVRAAAAALG 199 (211)
T ss_pred CC-CccCHHHHhcc--------CCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 32 22333333322 124689999999 899999999987743
No 63
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.83 E-value=2.6e-20 Score=190.09 Aligned_cols=180 Identities=15% Similarity=0.190 Sum_probs=122.5
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCCCCCCCC--------
Q 008747 331 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPAD-------- 402 (555)
Q Consensus 331 ~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~F~lp~~-------- 402 (555)
..|+||++|+|. ..+.++|+|+.+...........|.+|+||.++.+|+ .+.+..+.|.|.++.+
T Consensus 85 ~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~~~~~~~~~~~~~ 157 (300)
T PTZ00319 85 VQHSYTPISSDD-EKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGD------KIEMRGPVGKFEYLGNGTYTVHKG 157 (300)
T ss_pred EEeeeccCCCcc-cCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCC------EEEEEccceeeEecCCcceeeccc
Confidence 469999999985 3578998887652111000113488999998776654 3567777788755321
Q ss_pred -------CCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEc
Q 008747 403 -------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 475 (555)
Q Consensus 403 -------~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~S 475 (555)
...|++|||+|||||||++++++..... ....+++|+||+|+.+ |.+|.++|+++.+.. ..+++.+.+
T Consensus 158 ~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~---~~~~~i~liyg~r~~~-dl~~~~eL~~~~~~~-~~~~~~~~~ 232 (300)
T PTZ00319 158 KGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNK---EDRTKVFLVYANQTED-DILLRKELDEAAKDP-RFHVWYTLD 232 (300)
T ss_pred cccccccccceEEEEecCcccCHHHHHHHHHHhCC---CCCceEEEEEecCCHH-HhhHHHHHHHHhhCC-CEEEEEEEC
Confidence 1258999999999999999999876531 1124799999999997 999999999965443 347888888
Q ss_pred cCCC-----CcccccchhhccHHHHHHH-----HhCCCEEEEecCCcchHH-HHHHHHHHH
Q 008747 476 REGP-----TKEYVQHKMMEKSSDIWNM-----LSEGAYLYVCGDAKSMAR-DVHRTLHTI 525 (555)
Q Consensus 476 r~~~-----~k~yVq~~l~~~~~~v~~~-----l~~~~~iyvCG~~~~M~~-~v~~~L~~i 525 (555)
++.. ..++|+..+.+.. +... ...+..||+||| +.|++ .+.+.|++.
T Consensus 233 ~~~~~~~~~~~G~v~~~~l~~~--~~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~~L~~~ 290 (300)
T PTZ00319 233 REATPEWKYGTGYVDEEMLRAH--LPVPDPQNSGIKKVMALMCGP-PPMLQMAVKPNLEKI 290 (300)
T ss_pred CCCCCCcccccceeCHHHHHhh--cCCccccccccCCeEEEEECC-HHHHHHHHHHHHHHc
Confidence 7422 3467766443321 0000 003478999999 89988 567777553
No 64
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.83 E-value=1.5e-20 Score=183.53 Aligned_cols=147 Identities=18% Similarity=0.288 Sum_probs=108.0
Q ss_pred ccccccCCCCCCC--CCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCCCCCCC---CCCCC
Q 008747 332 PRYYSISSSPRVA--PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPA---DAKVP 406 (555)
Q Consensus 332 pR~YSIaSsp~~~--~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~F~lp~---~~~~p 406 (555)
.|+|||||+|... .++++|+|+.+ |.+|+||.+...... ..+..+.+..+.|.|.++. +..++
T Consensus 60 ~R~ySias~p~~~~~~~~l~l~vk~~-----------G~~T~~L~~~~~~~~-~~G~~v~v~gP~G~f~~~~~~~~~~~~ 127 (220)
T cd06197 60 VRTFTVSSAPPHDPATDEFEITVRKK-----------GPVTGFLFQVARRLR-EQGLEVPVLGVGGEFTLSLPGEGAERK 127 (220)
T ss_pred eeeEEeecCCccCCCCCEEEEEEEeC-----------CCCCHHHHHhhhccc-CCCceEEEEecCCcccCCcccccCCce
Confidence 4999999999743 26788777532 888999998654210 0123477888889998875 34578
Q ss_pred eEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCCCCcccccc
Q 008747 407 IIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQH 486 (555)
Q Consensus 407 iimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~k~yVq~ 486 (555)
+||||+|||||||++++++..... ....+++|+||+|+.+ |.+|.+||+++... ...... ++
T Consensus 128 illIagG~GItP~~sil~~l~~~~---~~~~~v~l~~~~r~~~-~~~~~~el~~~~~~--~~~~~~-~~----------- 189 (220)
T cd06197 128 MVWIAGGVGITPFLAMLRAILSSR---NTTWDITLLWSLREDD-LPLVMDTLVRFPGL--PVSTTL-FI----------- 189 (220)
T ss_pred EEEEecccchhhHHHHHHHHHhcc---cCCCcEEEEEEecchh-hHHHHHHHHhccCC--ceEEEE-EE-----------
Confidence 999999999999999999876431 1236899999999997 99999999876531 111111 11
Q ss_pred hhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHH
Q 008747 487 KMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 524 (555)
Q Consensus 487 ~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 524 (555)
.+.||+||| ++|+++|.+.+.+
T Consensus 190 ---------------~~~v~~CGP-~~m~~~~~~~~~~ 211 (220)
T cd06197 190 ---------------TSEVYLCGP-PALEKAVLEWLEG 211 (220)
T ss_pred ---------------eccEEEECc-HHHHHHHHHHhhh
Confidence 118999999 8999999988775
No 65
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.82 E-value=2.5e-20 Score=178.72 Aligned_cols=186 Identities=19% Similarity=0.336 Sum_probs=145.2
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEEE
Q 008747 331 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 410 (555)
Q Consensus 331 ~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~F~lp~~~~~piimI 410 (555)
.-|.||+||-|.+ .+.|.+-|++..-+-..+....|.||+|+.++.+|+. +.|+.+.|.|... +.++|+|+|
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDK------vtisGPfGEfFaK-dtdaemvFi 281 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDK------VTISGPFGEFFAK-DTDAEMVFI 281 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCe------EEEeccchhhhhc-cCCCceEEE
Confidence 3589999999975 4667666665432222345678999999999999764 6788888888775 558999999
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCCCC------cccc
Q 008747 411 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT------KEYV 484 (555)
Q Consensus 411 a~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~------k~yV 484 (555)
+||.|.||+||-+-+.+.+.+. .+++.+.||+|+.. +.+|+++.++++++.+.++.++|+|.+.++ .+++
T Consensus 282 gGGAGmapmRSHIfDqL~rlhS---kRkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFi 357 (410)
T COG2871 282 GGGAGMAPMRSHIFDQLKRLHS---KRKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFI 357 (410)
T ss_pred ecCcCcCchHHHHHHHHHhhcc---cceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHH
Confidence 9999999999999887765433 47899999999997 899999999999999999999999987543 2455
Q ss_pred cchhhccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCC
Q 008747 485 QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 531 (555)
Q Consensus 485 q~~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~ 531 (555)
...+.++ .+.++- .++..+|+||| +.|..+|.+.|.+.+.+..+
T Consensus 358 hnv~~en--~Lk~h~aPEDceyYmCGP-p~mNasvikmL~dlGVE~en 402 (410)
T COG2871 358 HNVLYEN--YLKDHEAPEDCEYYMCGP-PLMNASVIKMLKDLGVEREN 402 (410)
T ss_pred HHHHHhh--hhhcCCCchheeEEeeCc-chhhHHHHHHHHhcCccccc
Confidence 5555443 111211 46899999999 89999999999998776543
No 66
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.82 E-value=2.3e-20 Score=186.00 Aligned_cols=166 Identities=23% Similarity=0.299 Sum_probs=124.3
Q ss_pred CChHHHHHHhcCCC---cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEe
Q 008747 317 PPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 393 (555)
Q Consensus 317 ~p~~~ll~~~~p~~---~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 393 (555)
..+|||+.+.+|.. .+|+|||+|+| .+.++|+|+.+ |.+|.||.++.+|+ .+.|..|
T Consensus 32 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~~-----------G~~t~~l~~l~~G~------~v~i~gP 91 (250)
T PRK00054 32 MKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRKV-----------GEGTKKLSKLKEGD------ELDIRGP 91 (250)
T ss_pred CCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEEc-----------ChHHHHHhcCCCCC------EEEEEcc
Confidence 45788875544533 58999999998 46788877643 78899999876654 3667777
Q ss_pred cCC-CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEE
Q 008747 394 QSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 472 (555)
Q Consensus 394 ~~~-F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~ 472 (555)
.|. |.++. ..+|+||||+||||||+++++++..... .+++|+|++|+.+ |++|.+||+++.+ ++.
T Consensus 92 ~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~~------~~~ 157 (250)
T PRK00054 92 LGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG------VEVTTVLGARTKD-EVIFEEEFAKVGD------VYV 157 (250)
T ss_pred cCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC------CcEEEEEEcCCHH-HhhhHHHHHhcCC------EEE
Confidence 665 88764 4679999999999999999999986421 5799999999987 9999999998431 222
Q ss_pred EEccCC--CCcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 473 AFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 473 a~Sr~~--~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
.. ++. ..++||++.+.+.. .....||+||| +.|++++.+.|.+.
T Consensus 158 ~~-~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp-~~m~~~v~~~l~~~ 203 (250)
T PRK00054 158 TT-DDGSYGFKGFVTDVLDELD-------SEYDAIYSCGP-EIMMKKVVEILKEK 203 (250)
T ss_pred Ee-cCCCCCcccchhHhHhhhc-------cCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 22 222 24578887765431 24568999999 99999999998874
No 67
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.82 E-value=5.6e-20 Score=182.90 Aligned_cols=179 Identities=22% Similarity=0.307 Sum_probs=140.2
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecC
Q 008747 316 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 395 (555)
Q Consensus 316 ~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~ 395 (555)
...+|||+...+|....|+|||||.+.. .++++|.+.+. ..|.+|.+++.+.+++. +.+.+|.|
T Consensus 35 ~~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~---------~~G~~T~~i~~~k~gd~------i~v~GP~G 98 (252)
T COG0543 35 TFKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVY---------EVGKVTKYIFGLKEGDK------IRVRGPLG 98 (252)
T ss_pred ccCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEE---------eCChHHHHHhhccCCCE------EEEEcCCC
Confidence 3578999977778889999999999973 56677666554 34999999999876543 56777878
Q ss_pred CCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEc
Q 008747 396 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 475 (555)
Q Consensus 396 ~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~S 475 (555)
++.+..+..+|+++||+|||+||+++++++.... + ...+++++||.|++. |+++.+|++++... +++.+.+
T Consensus 99 ~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~---~-~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~ 169 (252)
T COG0543 99 NGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEK---G-DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD 169 (252)
T ss_pred CCccccccCCcEEEEecccCHhHHHHHHHHHHhc---C-CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC
Confidence 8777666778899999999999999999998753 2 346899999999997 99999999999875 3555554
Q ss_pred -cCCCCcccc-cchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 008747 476 -REGPTKEYV-QHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 526 (555)
Q Consensus 476 -r~~~~k~yV-q~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 526 (555)
.....+++| ++.+.+... .+...+|+||| +.|++++.+.+.+..
T Consensus 170 ~~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp-~~M~~~v~~~~~~~g 215 (252)
T COG0543 170 DGWKGRKGFVTTDVLKELLD------LEVDDVYICGP-PAMVKAVREKLKEYG 215 (252)
T ss_pred CCCCccCcceeHHHHhhhcc------ccCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 223367888 666655311 24689999999 999999999888754
No 68
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.82 E-value=4.3e-20 Score=182.07 Aligned_cols=166 Identities=22% Similarity=0.276 Sum_probs=121.4
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecC
Q 008747 316 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 395 (555)
Q Consensus 316 ~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~ 395 (555)
..-+||++.+.+|....|+|||+|+| +.++|+|+. .|.+|+||+++.+|+ .+.+..|.|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~Gd------~v~i~gP~G 81 (233)
T cd06220 23 DFKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEGD------KLGIRGPYG 81 (233)
T ss_pred CCCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCCC------EEEEECcCC
Confidence 34478888654455557999999987 568877653 288999999866543 356777767
Q ss_pred C-CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 396 N-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 396 ~-F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
. |.++ .+|+||||+|||||||++++++.... ++++|+||+|+++ |++|.+||++. . ++....
T Consensus 82 ~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~-------~~i~l~~~~r~~~-d~~~~~eL~~~----~--~~~~~~ 144 (233)
T cd06220 82 NGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA-------ADVTVLLGARTKE-ELLFLDRLRKS----D--ELIVTT 144 (233)
T ss_pred CCccCC---CCeEEEEecCcChHHHHHHHHHHHhc-------CCEEEEEecCChH-HChhHHHHhhC----C--cEEEEE
Confidence 6 7765 57999999999999999999987642 5899999999997 99999999972 1 222222
Q ss_pred cc-CCCCcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 008747 475 SR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 526 (555)
Q Consensus 475 Sr-~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 526 (555)
+. +....+++++.+.+.. ......||+||| +.|++++.+.|.+..
T Consensus 145 ~~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp-~~m~~~~~~~L~~~g 190 (233)
T cd06220 145 DDGSYGFKGFVTDLLKELD------LEEYDAIYVCGP-EIMMYKVLEILDERG 190 (233)
T ss_pred eCCCCcccceehHHHhhhc------ccCCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 21 1123567776554321 124568999999 899999999997643
No 69
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.81 E-value=9.1e-20 Score=180.91 Aligned_cols=172 Identities=15% Similarity=0.089 Sum_probs=122.4
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEe
Q 008747 317 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 393 (555)
Q Consensus 317 ~p~~~ll~~~~p---~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 393 (555)
..+|||+.+.+| ....|+|||+|.|.. .+.++|+|+.. |..|.||.++.+|+ .+.|..+
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~~-----------G~~t~~l~~~~~G~------~l~i~gP 86 (243)
T cd06192 25 FRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEIR-----------GPKTKLIAELKPGE------KLDVMGP 86 (243)
T ss_pred CCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEEc-----------CchHHHHHhCCCCC------EEEEEcc
Confidence 346788755443 345799999999853 47788877532 78899998876654 3567777
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEE
Q 008747 394 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 473 (555)
Q Consensus 394 ~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 473 (555)
.|.|.+..+..++++|||+|||||||++++++.... ..+++|+||+|+++ |.+|.+||+++. . .+ ..
T Consensus 87 ~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~------~~~v~l~~~~r~~~-d~~~~~el~~~~----~-~~-~~ 153 (243)
T cd06192 87 LGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN------GNKVTVLAGAKKAK-EEFLDEYFELPA----D-VE-IW 153 (243)
T ss_pred CCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC------CCeEEEEEecCcHH-HHHHHHHHHhhc----C-eE-EE
Confidence 777665544467999999999999999999997642 25899999999987 999999998772 1 12 22
Q ss_pred EccCCC--CcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 008747 474 FSREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 526 (555)
Q Consensus 474 ~Sr~~~--~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 526 (555)
.+.++. ..+++++... ... ...+..+|+||| +.|++++++.|.+..
T Consensus 154 ~~~~~~~~~~g~v~~~~~-----~~~-~~~~~~v~icGp-~~mv~~~~~~l~~~g 201 (243)
T cd06192 154 TTDDGELGLEGKVTDSDK-----PIP-LEDVDRIIVAGS-DIMMKAVVEALDEWL 201 (243)
T ss_pred EecCCCCccceeechhhh-----hhh-cccCCEEEEECC-HHHHHHHHHHHHhhc
Confidence 333321 3455554311 011 123568999999 899999999998864
No 70
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.80 E-value=9.5e-20 Score=181.28 Aligned_cols=171 Identities=15% Similarity=0.167 Sum_probs=121.5
Q ss_pred CChHHHHHHhcC-CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCcee-eEEEec
Q 008747 317 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 394 (555)
Q Consensus 317 ~p~~~ll~~~~p-~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v-~v~~~~ 394 (555)
..+|||+.+.++ ....|+|||+|+|.. .+.++|+|+.+ |..|.+|.++.+|+ .+ .+..|.
T Consensus 27 ~~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~~-----------G~~t~~l~~l~~G~------~v~~i~gP~ 88 (248)
T cd06219 27 AKPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQVV-----------GKSTRELATLEEGD------KIHDVVGPL 88 (248)
T ss_pred CCCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEeC-----------CchHHHHHhcCCCC------EeeeeecCC
Confidence 347888744333 235699999998752 46788777532 77899998876653 24 466777
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|.|.+..+ .+|+||||+||||||+++++++.... ..+++|+||+|+.+ |++|.+||+++.++ ++.+
T Consensus 89 G~~~~~~~-~~~~lliagG~GiaP~~~~l~~~~~~------~~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~- 154 (248)
T cd06219 89 GKPSEIEN-YGTVVFVGGGVGIAPIYPIAKALKEA------GNRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT- 154 (248)
T ss_pred CCCeecCC-CCeEEEEeCcccHHHHHHHHHHHHHc------CCeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE-
Confidence 87765433 67999999999999999999996642 15799999999997 99999999998643 2222
Q ss_pred ccCC--CCcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHH
Q 008747 475 SREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 524 (555)
Q Consensus 475 Sr~~--~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 524 (555)
+++. ...+|+++.+.+.. .+ ......||+||| +.|++++.+.|.+
T Consensus 155 ~~~~~~~~~g~v~~~l~~~~---~~-~~~~~~vyiCGP-~~m~~~~~~~l~~ 201 (248)
T cd06219 155 TDDGSYGEKGFVTDPLKELI---ES-GEKVDLVIAIGP-PIMMKAVSELTRP 201 (248)
T ss_pred eCCCCCCccccchHHHHHHH---hc-cCCccEEEEECC-HHHHHHHHHHHHH
Confidence 3332 23567766554321 01 123458999999 8999999998865
No 71
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.80 E-value=9.2e-20 Score=184.57 Aligned_cols=172 Identities=16% Similarity=0.148 Sum_probs=122.4
Q ss_pred CChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCcee-eEEEec
Q 008747 317 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 394 (555)
Q Consensus 317 ~p~~~ll~~~~p~~-~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v-~v~~~~ 394 (555)
.-+|||+.+-++.. ..|+|||+|++.. .+.++|+|+.+ |..|.+|+++.+|+ .+ .|..|.
T Consensus 28 ~~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~~-----------G~~T~~L~~l~~Gd------~v~~i~GP~ 89 (281)
T PRK06222 28 AKPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQAV-----------GKSTRKLAELKEGD------SILDVVGPL 89 (281)
T ss_pred CCCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEeC-----------CcHHHHHhcCCCCC------EEeeEEcCC
Confidence 34788875444432 3589999998753 46788877643 88899999876654 35 477777
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|+|....+ .+++||||+|+||||+++++++.... ..+++|+||+|+++ |.+|.+||+++... +++ .
T Consensus 90 G~~~~~~~-~~~~llIaGGiGiaPl~~l~~~l~~~------~~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v-~ 155 (281)
T PRK06222 90 GKPSEIEK-FGTVVCVGGGVGIAPVYPIAKALKEA------GNKVITIIGARNKD-LLILEDEMKAVSDE-----LYV-T 155 (281)
T ss_pred CCCcccCC-CCeEEEEeCcCcHHHHHHHHHHHHHC------CCeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-E
Confidence 87655433 57999999999999999999987542 14799999999997 99999999987642 222 2
Q ss_pred ccCC--CCcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 475 SREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 475 Sr~~--~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
+.+. ..+++|++.+.+.. .+ ......||+||| +.|++++.+.|.+.
T Consensus 156 ~~d~~~g~~G~v~~~l~~~~---~~-~~~~~~vy~CGP-~~M~~~v~~~l~~~ 203 (281)
T PRK06222 156 TDDGSYGRKGFVTDVLKELL---ES-GKKVDRVVAIGP-VIMMKFVAELTKPY 203 (281)
T ss_pred cCCCCcCcccchHHHHHHHh---hc-CCCCcEEEEECC-HHHHHHHHHHHHhc
Confidence 2322 24567776554321 11 111458999999 99999999988764
No 72
>PRK05802 hypothetical protein; Provisional
Probab=99.78 E-value=1.9e-19 Score=184.84 Aligned_cols=169 Identities=11% Similarity=0.086 Sum_probs=118.5
Q ss_pred ChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEec
Q 008747 318 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 394 (555)
Q Consensus 318 p~~~ll~~~~p---~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~ 394 (555)
-+|||+.+.+| ....|+|||+|+|.. .+.++|+|+.+ |..|.+|.++.+|+. +.|..|.
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~~-----------G~~T~~L~~l~~Gd~------l~v~GP~ 157 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEIR-----------GVKTKKIAKLNKGDE------ILLRGPY 157 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEec-----------ChhHHHHhcCCCCCE------EEEeCCC
Confidence 36777744333 233599999999863 57788887653 889999998776543 5566664
Q ss_pred --CCCCCC---CCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcce
Q 008747 395 --SNFKLP---ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 469 (555)
Q Consensus 395 --~~F~lp---~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~ 469 (555)
|.|.++ ....+++++||+|+||||+++++++....+ .+++|+||+|+++ |.+|.++|+++..+...
T Consensus 158 GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~------~~v~li~g~r~~~-~~~~~~el~~~~~~~~~-- 228 (320)
T PRK05802 158 WNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG------NKIIVIIDKGPFK-NNFIKEYLELYNIEIIE-- 228 (320)
T ss_pred CcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC------CcEEEEEeCCCHH-HHHHHHHHHHhhCceEE--
Confidence 336553 233568999999999999999999886532 4799999999987 99999999988654222
Q ss_pred EEEEEccCCC----CcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 470 LIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 470 l~~a~Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
..+..++. .+++|++.+.+. +...||+||| +.|+++|.+.|.++
T Consensus 229 --~~~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP-~~M~k~v~~~l~~~ 276 (320)
T PRK05802 229 --LNLLDDGELSEEGKDILKEIIKKE---------DINLIHCGGS-DILHYKIIEYLDKL 276 (320)
T ss_pred --EEecccCCCCccccchHHHHhcCC---------CCCEEEEECC-HHHHHHHHHHHhhh
Confidence 11111211 133444443321 2368999999 99999999988774
No 73
>PLN02252 nitrate reductase [NADPH]
Probab=99.76 E-value=2.2e-18 Score=196.74 Aligned_cols=191 Identities=15% Similarity=0.224 Sum_probs=132.4
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEe
Q 008747 317 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 393 (555)
Q Consensus 317 ~p~~~ll~~~~p---~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 393 (555)
.++||++.+.++ ....|+|||+|.+.. .+.++|+|+++...........|.+|+||.++.+|+. +.|..+
T Consensus 665 l~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~------V~V~GP 737 (888)
T PLN02252 665 LPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDT------IDVKGP 737 (888)
T ss_pred CCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCCCE------EEEecC
Confidence 356776643222 224699999999863 4789998886522111111235999999988766543 556666
Q ss_pred cCCC--------CCCCC--CCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHH
Q 008747 394 QSNF--------KLPAD--AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 463 (555)
Q Consensus 394 ~~~F--------~lp~~--~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~ 463 (555)
.|.| .++.. ..++++|||+|||||||++++++..... ....+++||||+|+.+ |++|++||+++++
T Consensus 738 ~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~---~d~t~i~Liyg~Rt~~-Dil~~eEL~~la~ 813 (888)
T PLN02252 738 LGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDP---EDKTEMSLVYANRTED-DILLREELDRWAA 813 (888)
T ss_pred ccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhcc---CCCCcEEEEEEECCHH-HhhHHHHHHHHHH
Confidence 5654 44422 2478999999999999999999986532 2236899999999997 9999999999987
Q ss_pred cC-CcceEEEEEccCC-C----CcccccchhhccHHHHHHHH---hCCCEEEEecCCcchHHH-HHHHHHHH
Q 008747 464 SG-ALSQLIVAFSREG-P----TKEYVQHKMMEKSSDIWNML---SEGAYLYVCGDAKSMARD-VHRTLHTI 525 (555)
Q Consensus 464 ~~-~~~~l~~a~Sr~~-~----~k~yVq~~l~~~~~~v~~~l---~~~~~iyvCG~~~~M~~~-v~~~L~~i 525 (555)
.. ...+++.++|++. . .+++|++.+.+. .+ ..+..+|+||| +.|++. +...|.++
T Consensus 814 ~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~------~l~~~~~~~~vyiCGP-p~Mi~~av~~~L~~~ 878 (888)
T PLN02252 814 EHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLRE------HLPEGGDETLALMCGP-PPMIEFACQPNLEKM 878 (888)
T ss_pred hCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHH------hcccCCCCeEEEEeCC-HHHHHHHHHHHHHHc
Confidence 65 3447888888743 1 356776644322 22 23568999999 899984 77777653
No 74
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.76 E-value=6.6e-18 Score=167.40 Aligned_cols=181 Identities=15% Similarity=0.245 Sum_probs=135.0
Q ss_pred CChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEe
Q 008747 317 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 393 (555)
Q Consensus 317 ~p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 393 (555)
.|.|+.+....|. .--|+||-.|++.. .+.+++.|+.. ..|.+|.||.++..|+. +.+.+|
T Consensus 82 lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y---------~~G~mS~~l~~LkiGd~------ve~rGP 145 (286)
T KOG0534|consen 82 LPIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVY---------PKGKMSQHLDSLKIGDT------VEFRGP 145 (286)
T ss_pred cccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEec---------cCCcccHHHhcCCCCCE------EEEecC
Confidence 3555554333332 24699999998874 57899877654 23999999999987653 566677
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCC-cceEEE
Q 008747 394 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIV 472 (555)
Q Consensus 394 ~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~-~~~l~~ 472 (555)
.|.|.++....+.+.|||||||||||..++++..... .+..+++|+|++++++ |.++++||+.++++.. .+.+..
T Consensus 146 ~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~---~d~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~y 221 (286)
T KOG0534|consen 146 IGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDP---EDTTKISLLYANKTED-DILLREELEELASKYPERFKVWY 221 (286)
T ss_pred ccceEecCCCcceEEEEecccchhhHHHHHHHHhcCC---CCCcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEEE
Confidence 7888887666788999999999999999999988643 2357899999999997 9999999999998876 667888
Q ss_pred EEccCCC----CcccccchhhccHHHHHHHH---hC-CCEEEEecCCcchHHH-HHHHHHH
Q 008747 473 AFSREGP----TKEYVQHKMMEKSSDIWNML---SE-GAYLYVCGDAKSMARD-VHRTLHT 524 (555)
Q Consensus 473 a~Sr~~~----~k~yVq~~l~~~~~~v~~~l---~~-~~~iyvCG~~~~M~~~-v~~~L~~ 524 (555)
+.+++.. .++||...+.. +.+ .+ ...++|||| ++|... +...|.+
T Consensus 222 ~v~~~~~~w~~~~g~It~~~i~------~~l~~~~~~~~~~liCGP-p~m~~~~~~~~le~ 275 (286)
T KOG0534|consen 222 VVDQPPEIWDGSVGFITKDLIK------EHLPPPKEGETLVLICGP-PPMINGAAQGNLEK 275 (286)
T ss_pred EEcCCcccccCccCccCHHHHH------hhCCCCCCCCeEEEEECC-HHHHhHHHHHHHHh
Confidence 8887652 46777654432 233 22 479999999 899974 4444443
No 75
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.75 E-value=6.9e-18 Score=168.04 Aligned_cols=165 Identities=19% Similarity=0.306 Sum_probs=123.9
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEE
Q 008747 330 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 409 (555)
Q Consensus 330 ~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~F~lp~~~~~piim 409 (555)
+.|++||||++.. ..+++++|+.. |..|.-|++..+.|+ .+.|..|.|.|......+. .|+
T Consensus 260 ~~~HPFTIa~s~~--~sel~FsIK~L-----------GD~Tk~l~dnLk~G~-----k~~vdGPYG~F~~~~g~~~-QVW 320 (438)
T COG4097 260 MRPHPFTIACSHE--GSELRFSIKAL-----------GDFTKTLKDNLKVGT-----KLEVDGPYGKFDFERGLNT-QVW 320 (438)
T ss_pred CCCCCeeeeeCCC--CceEEEEehhh-----------hhhhHHHHHhccCCc-----eEEEecCcceeecccCCcc-cEE
Confidence 4599999999976 34788877654 999999998555444 4678888999988643333 899
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCCCCcccccchhh
Q 008747 410 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMM 489 (555)
Q Consensus 410 Ia~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~ 489 (555)
||||+|||||+|+++.....+. ..+++|||.||+.+ |-+|.+||+++.+......++..-| ..++|+.....
T Consensus 321 IAGGIGITPFis~l~~l~~~~s----~~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHiiDS---s~~g~l~~e~l 392 (438)
T COG4097 321 IAGGIGITPFISMLFTLAERKS----DPPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHIIDS---SKDGYLDQEDL 392 (438)
T ss_pred EecCcCcchHHHHHHhhccccc----CCceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEEecC---CCCCccCHHHh
Confidence 9999999999999999876332 36899999999997 9999999999999776666776444 34566643322
Q ss_pred ccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 008747 490 EKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 526 (555)
Q Consensus 490 ~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 526 (555)
+.. .+ ......||+||| .+|++++++.|+..-
T Consensus 393 er~---~~-~~~~~sv~fCGP-~~m~dsL~r~l~~~~ 424 (438)
T COG4097 393 ERY---PD-RPRTRSVFFCGP-IKMMDSLRRDLKKQN 424 (438)
T ss_pred hcc---cc-ccCcceEEEEcC-HHHHHHHHHHHHHcC
Confidence 220 00 022348999999 999999999888743
No 76
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.72 E-value=1.8e-17 Score=196.61 Aligned_cols=183 Identities=17% Similarity=0.289 Sum_probs=131.4
Q ss_pred CChHHHHHHhcC--C-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEe
Q 008747 317 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 393 (555)
Q Consensus 317 ~p~~~ll~~~~p--~-~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 393 (555)
..+|||+.+.++ . ...|+|||+|.|. ..+.++|+|+. ..|.+|+||+++.+|+. +.|..+
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr~----------~~G~~S~~L~~l~~Gd~------v~v~gp 1010 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILARG----------DKGTLKEWISALRPGDS------VEMKAC 1010 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEEc----------CCChhHHHHhhCCCCCE------EEEeCC
Confidence 457898854432 1 2349999999996 35678776641 24889999988776543 445443
Q ss_pred cC----------CCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHH
Q 008747 394 QS----------NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 463 (555)
Q Consensus 394 ~~----------~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~ 463 (555)
.| .|.++.+..+|+||||+|||||||++|+++...... .....+++||||+|+.+ |++|++||+++.+
T Consensus 1011 ~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~-~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~~ 1088 (1167)
T PTZ00306 1011 GGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY-VDSIESIRLIYAAEDVS-ELTYRELLESYRK 1088 (1167)
T ss_pred cCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc-cCCCceEEEEEEeCCHH-HhhHHHHHHHHHH
Confidence 22 456665566899999999999999999998765311 01235899999999997 9999999999987
Q ss_pred cCC-cceEEEEEccCCC----CcccccchhhccHHHHHHHH---hCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 464 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML---SEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 464 ~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~v~~~l---~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
... .++++.++|++.+ ..++|++.+.+ +.+ ..+..||+||| +.|++++.+.|++.
T Consensus 1089 ~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~------~~l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1089 ENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQ------SALQPPSKDLLVAICGP-PVMQRAVKADLLAL 1151 (1167)
T ss_pred HCCCCEEEEEEECCCCcccCCCCCCCCHHHHH------HhcCCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 654 3578888987532 34666654322 122 24568999999 89999999988764
No 77
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.71 E-value=5.5e-18 Score=154.07 Aligned_cols=92 Identities=37% Similarity=0.528 Sum_probs=81.8
Q ss_pred CeEEEEeccCCCCccCccHH-HHHHHHHhhc--CCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccccccc
Q 008747 1 MKIYVIGCRYGDGEPTDNAA-RFYKWFTEQK--EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 77 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~-~f~~~l~~~~--~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~~~ 77 (555)
+.+||++||||+|++|+|+. .|++|+.... .....+++++|||||+||+.|.+||.+++.++++|+++||+++.|++
T Consensus 47 ~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~ 126 (143)
T PF00258_consen 47 DLLIFGVSTYGEGEPPDNAKEFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLL 126 (143)
T ss_dssp SEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSE
T ss_pred ceeeEeecccCCCcchhhhhhhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcE
Confidence 36899999999999999999 6777776542 13346899999999999999999999999999999999999999999
Q ss_pred cccCCC--CchhhHHHH
Q 008747 78 LGDDDQ--CIEDDFSAW 92 (555)
Q Consensus 78 ~~d~~~--~~~~~~~~W 92 (555)
++|+.. +.+++|++|
T Consensus 127 ~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 127 EIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp EEETTTHGGHHHHHHHH
T ss_pred EEecCCCcChHHHHhCC
Confidence 999977 788999999
No 78
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.71 E-value=1.8e-17 Score=143.30 Aligned_cols=104 Identities=25% Similarity=0.444 Sum_probs=80.1
Q ss_pred EEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCc-ceEEEEEccCCC----Cccc
Q 008747 409 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL-SQLIVAFSREGP----TKEY 483 (555)
Q Consensus 409 mIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~-~~l~~a~Sr~~~----~k~y 483 (555)
|||+|||||||+|+++++.... ..++++||||+|+.+ |++|+++|+++.+.... .+++.+ ++... .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN----DNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT----CTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHhC----CCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 7999999999999999998652 247899999999998 99999999999987654 233333 44322 3689
Q ss_pred ccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHH
Q 008747 484 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHR 520 (555)
Q Consensus 484 Vq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~ 520 (555)
|++.+.+.... ......+..||+||| ++|+++|++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECC-HHHHHHhcC
Confidence 99988664322 112257899999999 999999874
No 79
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.69 E-value=3.7e-17 Score=187.03 Aligned_cols=172 Identities=17% Similarity=0.173 Sum_probs=125.3
Q ss_pred CChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCcee-eEEEec
Q 008747 317 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 394 (555)
Q Consensus 317 ~p~~~ll~~~~p~~-~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v-~v~~~~ 394 (555)
..+|||+.+.++.. ..|+|||+|.+.. .+.++|+|+.+ |..|.+|+++.+|+. + .|..|.
T Consensus 28 ~~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~v-----------G~~T~~L~~l~~Gd~------v~~v~GP~ 89 (752)
T PRK12778 28 RKPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQEV-----------GLSTTKLCELNEGDY------ITDVVGPL 89 (752)
T ss_pred CCCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEEc-----------CchHHHHhcCCCCCE------eCeEeCCC
Confidence 34788885443433 3589999998853 57788888654 888999998766543 5 477787
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|+|..... .++++|||+|+||||+++++++..... .+++||||+|+.+ |++|.+||+++..+ +.++
T Consensus 90 G~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~- 155 (752)
T PRK12778 90 GNPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKAAG------NRVITILGGRSKE-LIILEDEMRESSDE-----VIIM- 155 (752)
T ss_pred CCCccCCC-CCeEEEEECCEeHHHHHHHHHHHHHCC------CeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEE-
Confidence 88776533 478999999999999999999876531 4799999999997 99999999988643 2222
Q ss_pred ccCC--CCcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 475 SREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 475 Sr~~--~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
+.++ ..+++|++.+.+... + ..+...||+||| +.|++++.+.+.+.
T Consensus 156 t~dg~~g~~G~v~~~l~~~~~---~-~~~~~~vy~CGP-~~M~~~v~~~l~~~ 203 (752)
T PRK12778 156 TDDGSYGRKGLVTDGLEEVIK---R-ETKVDKVFAIGP-AIMMKFVCLLTKKY 203 (752)
T ss_pred ECCCCCCCcccHHHHHHHHhh---c-CCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 2332 246788876644210 0 012357999999 99999999988653
No 80
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.66 E-value=2.1e-16 Score=153.08 Aligned_cols=169 Identities=17% Similarity=0.207 Sum_probs=112.7
Q ss_pred CCChHHHHHHhcCCC----cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEE
Q 008747 316 KPPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 391 (555)
Q Consensus 316 ~~p~~~ll~~~~p~~----~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 391 (555)
...+||++.+.+|.. ..|+|||+|+|....+.++|+|+.. .|.+|.++..+........+..+.+.
T Consensus 24 ~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t~~~~~~~~~~~~~~~~~v~v~ 93 (210)
T cd06186 24 KWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTTRLLRKALKSPGGGVSLKVLVE 93 (210)
T ss_pred ccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEec----------CChHHHHHHHHHhCcCCCceeEEEEE
Confidence 344777775555654 6899999999863247888877532 27777777766420000112235566
Q ss_pred EecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCC-CCcHHHHHHHHHcCCcceE
Q 008747 392 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMD-YIYEDELNNFVQSGALSQL 470 (555)
Q Consensus 392 ~~~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d-~ly~del~~~~~~~~~~~l 470 (555)
.|.|.+..+.....++||||+||||||+++++++............++.|+|++|+.+ | ..|.++|.+..+-....++
T Consensus 94 GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~~~~~~~~~~~ 172 (210)
T cd06186 94 GPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRAAQELEVDGEI 172 (210)
T ss_pred CCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHhhhhccCCceE
Confidence 6677776444456789999999999999999999876432111236899999999987 6 5799999751111110022
Q ss_pred EEEEccCCCCcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHH
Q 008747 471 IVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 524 (555)
Q Consensus 471 ~~a~Sr~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 524 (555)
....++ +|+||| .+|.++++....+
T Consensus 173 ~i~~T~----------------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 173 EIYVTR----------------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred EEEEee----------------------------EEEECc-hhhccHHHHHHhh
Confidence 322332 999999 8999999988766
No 81
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.65 E-value=8.2e-17 Score=158.93 Aligned_cols=157 Identities=14% Similarity=0.167 Sum_probs=104.8
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEEE
Q 008747 331 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 410 (555)
Q Consensus 331 ~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~F~lp~~~~~piimI 410 (555)
..|+|||+|.+. ..++++|.|..+ + ..|.+|+||.++.+|+ .+.+..+.|.|.++. ..++++||
T Consensus 63 ~~R~YSi~~~~~-~~~~l~~~v~~~----~----~~G~~s~~l~~l~~Gd------~v~v~gP~G~~~~~~-~~~~~vli 126 (235)
T cd06193 63 VMRTYTVRRFDP-EAGELDIDFVLH----G----DEGPASRWAASAQPGD------TLGIAGPGGSFLPPP-DADWYLLA 126 (235)
T ss_pred cCcccceeEEcC-CCCEEEEEEEeC----C----CCCchHHHHhhCCCCC------EEEEECCCCCCCCCC-CcceEEEE
Confidence 459999999875 357788777543 1 1278899998876654 366777889998764 45789999
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCCCCcccccchhhc
Q 008747 411 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 490 (555)
Q Consensus 411 a~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~ 490 (555)
|+||||||+++++++.... .+++++||+|+++ |.++.+++. .+ +++...+++.. .......+..
T Consensus 127 a~GtGi~p~~~il~~~~~~-------~~~~~~~~~~~~~-d~~~l~~~~------~~-~~~~~~~~~~~-~~~~~~~~~~ 190 (235)
T cd06193 127 GDETALPAIAAILEELPAD-------ARGTALIEVPDAA-DEQPLPAPA------GV-EVTWLHRGGAE-AGELALLAVR 190 (235)
T ss_pred eccchHHHHHHHHHhCCCC-------CeEEEEEEECCHH-HccccCCCC------Cc-EEEEEeCCCCC-cchhHHHHHh
Confidence 9999999999999986421 5799999999985 544433321 22 45554443322 1111100000
Q ss_pred cHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHH
Q 008747 491 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 524 (555)
Q Consensus 491 ~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 524 (555)
. ......+..+|+||| +.|++++++.|.+
T Consensus 191 ~----~~~~~~~~~vyicGp-~~mv~~v~~~l~~ 219 (235)
T cd06193 191 A----LAPPAGDGYVWIAGE-AGAVRALRRHLRE 219 (235)
T ss_pred c----ccCCCCCeEEEEEcc-HHHHHHHHHHHHH
Confidence 0 000124579999999 8999999988765
No 82
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.63 E-value=8.9e-16 Score=177.66 Aligned_cols=181 Identities=14% Similarity=0.120 Sum_probs=121.7
Q ss_pred CChHHHHHHhcC-CCcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceee-EEEec
Q 008747 317 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP-IFVRQ 394 (555)
Q Consensus 317 ~p~~~ll~~~~p-~~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~-v~~~~ 394 (555)
..+|||+.+.++ ....|+|||+|.+.. .+.++|+|+.+ |..|.+|.++.+|+. +. |..|.
T Consensus 677 ~~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~v-----------G~~T~~L~~lk~Gd~------l~~I~GPl 738 (944)
T PRK12779 677 AQAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQGM-----------GTSSLEINRMAIGDA------FSGIAGPL 738 (944)
T ss_pred CCCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEee-----------ccHHHHHhcCCCcCE------EeeeecCC
Confidence 347998854322 233599999998752 46788877644 777888888776543 42 66777
Q ss_pred CCCC-CCC-CCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHH---HHHHHcCC-cc
Q 008747 395 SNFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDEL---NNFVQSGA-LS 468 (555)
Q Consensus 395 ~~F~-lp~-~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del---~~~~~~~~-~~ 468 (555)
|.|. ++. ...+++||||+|+||||+++++++..... .+++|+||+|+++ |++|.+++ ++|++... ..
T Consensus 739 G~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g------~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~~ 811 (944)
T PRK12779 739 GRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG------NHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQL 811 (944)
T ss_pred CCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC------CCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCCe
Confidence 7764 432 22468999999999999999999876431 5799999999986 88887764 55655432 22
Q ss_pred eEEEEEccCC--CCcccccchhhccHHHHHHHHh--CCCEEEEecCCcchHHHHHHHHHHH
Q 008747 469 QLIVAFSREG--PTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 469 ~l~~a~Sr~~--~~k~yVq~~l~~~~~~v~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
+++++ +.++ ..+++|++.+.+....... .. ....||+||| +.|+++|.+.|.+.
T Consensus 812 ~v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~-~~~~~~~~Vy~CGP-~~Mmkav~~~l~~~ 869 (944)
T PRK12779 812 DVIYT-TNDGSFGVKGFVTGPLEEMLKANQQ-GKGRTIAEVIAIGP-PLMMRAVSDLTKPY 869 (944)
T ss_pred EEEEE-ecCCCCCCccccChHHHHHHHhccc-ccccCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 44433 3332 2467888766442110000 00 1358999999 99999999988664
No 83
>PRK07308 flavodoxin; Validated
Probab=99.56 E-value=1.7e-14 Score=131.80 Aligned_cols=91 Identities=26% Similarity=0.285 Sum_probs=77.1
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 81 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~d~ 81 (555)
.|||++||||+|++|+++.+|+++|+.. .+++++|+|||+||+.|+.||.+++.++++|.++||+.+.+..+.+.
T Consensus 51 ~vi~g~~t~g~G~~p~~~~~fl~~l~~~-----~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~ 125 (146)
T PRK07308 51 IAIVATYTYGDGELPDEIVDFYEDLADL-----DLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDL 125 (146)
T ss_pred EEEEEeCccCCCCCCHHHHHHHHHHhcC-----CCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeC
Confidence 5899999999999999999999999865 38899999999999999999999999999999999999988887766
Q ss_pred CCC--chhhHHHHHHHHH
Q 008747 82 DQC--IEDDFSAWRELVW 97 (555)
Q Consensus 82 ~~~--~~~~~~~W~~~l~ 97 (555)
..+ ..+...+|...|.
T Consensus 126 ~p~~~~~~~~~~~~~~l~ 143 (146)
T PRK07308 126 AAEDEDIERLEAFAEELA 143 (146)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 432 2334456665543
No 84
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.55 E-value=7.9e-15 Score=171.21 Aligned_cols=170 Identities=15% Similarity=0.183 Sum_probs=118.2
Q ss_pred ChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhh-ccCCCCcCCCCcee-eEEEec
Q 008747 318 PLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWA-PIFVRQ 394 (555)
Q Consensus 318 p~~~ll~~~~p~-~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~-~~~~~~~~~~~~~v-~v~~~~ 394 (555)
-+|||+.+.++. ...|+|||++.+. ..+.++|.|+.+ |..|.||+ ++.+|+. + .+..|.
T Consensus 29 ~PGQFV~l~~~~~~errplSIa~~~~-~~g~i~l~vk~v-----------G~~T~~L~~~lk~Gd~------l~~v~GPl 90 (1006)
T PRK12775 29 EPGHFVMLRLYEGAERIPLTVADFDR-KKGTITMVVQAL-----------GKTTREMMTKFKAGDT------FEDFVGPL 90 (1006)
T ss_pred CCCeeEEEEeCCCCeeEEEEecCcCC-CCCEEEEEEEec-----------CcHHHHHHhcCCCCCE------EeeeecCC
Confidence 478988544332 3458999999774 246777766543 88899995 5655542 3 466666
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEE
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 474 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 474 (555)
|.|.... ..+++||||+|+||||+++++++....+ .+++++||+|+++ +++|.+||+++... ++++
T Consensus 91 G~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~~g------~~v~li~g~R~~~-~l~~~del~~~~~~-----~~v~- 156 (1006)
T PRK12775 91 GLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKEAG------ARTTGIIGFRNKD-LVFWEDKFGKYCDD-----LIVC- 156 (1006)
T ss_pred CCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHhCC------CcEEEEEeCCChH-HcccHHHHHhhcCc-----EEEE-
Confidence 7654332 2468999999999999999999865431 4699999999987 89999999876532 2222
Q ss_pred ccCC--CCcccccchhhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008747 475 SREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 525 (555)
Q Consensus 475 Sr~~--~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 525 (555)
+.++ ..+++|++.+.+... + .....||+||| +.|++.|.+.+++.
T Consensus 157 tddgs~G~~G~vt~~l~~~l~---~--~~~d~vy~CGP-~~Mm~av~~~~~~~ 203 (1006)
T PRK12775 157 TDDGSYGKPGFVTAALKEVCE---K--DKPDLVVAIGP-LPMMNACVETTRPF 203 (1006)
T ss_pred ECCCCCCCCCChHHHHHHHhc---c--CCCCEEEEECC-HHHHHHHHHHHHHC
Confidence 2222 246788876654210 0 12358999999 89999999988653
No 85
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=99.51 E-value=4.7e-14 Score=142.74 Aligned_cols=96 Identities=31% Similarity=0.561 Sum_probs=84.9
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcC----CCCCCCCceEEEEeecCCCc-hHHHHHHHHHHHHHHHcCCcccccc
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKE----GGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPV 76 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~----~~~~l~~~~~avfGlGds~y-~~f~~~~~~~~~~l~~lGa~~i~~~ 76 (555)
.++|+++|+-+|+|| +.-|.+||++... .+.+|.+++||||||||+.| ++||+.|++.|+++..|||.|++|+
T Consensus 94 ~~~~lv~~~~~~~~~--~d~~~~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~ 171 (601)
T KOG1160|consen 94 ALYFLVLPSYDIDPP--LDYFLQWLEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPL 171 (601)
T ss_pred eEEEEEecccCCCCc--HHHHHHHHHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeec
Confidence 478999999999999 8899999997653 46679999999999999997 8999999999999999999999999
Q ss_pred ccccCCCCchhhHHHHHHHHHHHHHh
Q 008747 77 GLGDDDQCIEDDFSAWRELVWPELDN 102 (555)
Q Consensus 77 ~~~d~~~~~~~~~~~W~~~l~~~l~~ 102 (555)
|++|.+. ...+.|...+...|..
T Consensus 172 G~~~~~~---~~id~W~~~~~~~Lk~ 194 (601)
T KOG1160|consen 172 GEVDMDS---AKIDEWTSLVAETLKD 194 (601)
T ss_pred Ccccccc---ccHHHHHHHHHHHHcC
Confidence 9999874 3456999999888764
No 86
>PLN02292 ferric-chelate reductase
Probab=99.42 E-value=6.2e-13 Score=147.85 Aligned_cols=177 Identities=16% Similarity=0.164 Sum_probs=112.9
Q ss_pred ChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEec
Q 008747 318 PLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 394 (555)
Q Consensus 318 p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~ 394 (555)
.+||++-..+|. .+.|+|||+|+|..+++.++++|+. .|..|++|.+....++......+.+.+|.
T Consensus 353 ~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd~i~~~~V~VeGPY 421 (702)
T PLN02292 353 SPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSDQIDRLAVSVEGPY 421 (702)
T ss_pred CCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCCccccceEEEECCc
Confidence 356654333454 4679999999985445778877763 27789999876543332212234566677
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCCCCcHHHHHH-------HHHcCC
Q 008747 395 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNN-------FVQSGA 466 (555)
Q Consensus 395 ~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~del~~-------~~~~~~ 466 (555)
|.+..+.....+++|||||+||||+++++++........ ....++.|+|++|+.+ |.++.+++.. +.++..
T Consensus 422 G~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~~~~~ 500 (702)
T PLN02292 422 GPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELSSFID 500 (702)
T ss_pred cCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHhhcCC
Confidence 776544344578999999999999999999987542111 1136899999999997 8888765443 223333
Q ss_pred cceEEEEEccCCCCc-ccccchhhccHHHHHHHH-----hCCCEEEEecCC
Q 008747 467 LSQLIVAFSREGPTK-EYVQHKMMEKSSDIWNML-----SEGAYLYVCGDA 511 (555)
Q Consensus 467 ~~~l~~a~Sr~~~~k-~yVq~~l~~~~~~v~~~l-----~~~~~iyvCG~~ 511 (555)
+ ++...++|+.+.+ .|-+. +.+.+.+.+ .+...+.+|||.
T Consensus 501 ~-~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~ 546 (702)
T PLN02292 501 I-QIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPN 546 (702)
T ss_pred c-eEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCC
Confidence 3 5677777865432 12222 222332332 256789999994
No 87
>PRK12359 flavodoxin FldB; Provisional
Probab=99.41 E-value=1.1e-12 Score=122.09 Aligned_cols=97 Identities=18% Similarity=0.268 Sum_probs=78.8
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCC-Cc-hHHHHHHHHHHHHHHHcCCccccc---
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNR-QY-EHFNKIAKVVDEILANQGAKRLVP--- 75 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds-~y-~~f~~~~~~~~~~l~~lGa~~i~~--- 75 (555)
+.+||.+||||.|++|+++..|+..|.+. .|+|+++||||+||+ .| ++||.+++.++++|.+.||+.+-.
T Consensus 47 D~iIlG~pTw~~Gel~~d~~~~~~~l~~~-----dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~ 121 (172)
T PRK12359 47 DVLILGIPTWDFGEIQEDWEAVWDQLDDL-----NLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPT 121 (172)
T ss_pred CEEEEEecccCCCcCcHHHHHHHHHHhhC-----CCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeC
Confidence 35899999999999999999999998765 489999999999997 59 799999999999999999976610
Q ss_pred -----------c--c------cccCCC---CchhhHHHHHHHHHHHHHh
Q 008747 76 -----------V--G------LGDDDQ---CIEDDFSAWRELVWPELDN 102 (555)
Q Consensus 76 -----------~--~------~~d~~~---~~~~~~~~W~~~l~~~l~~ 102 (555)
. + ..|+++ -.++.++.|+++|-+.+..
T Consensus 122 ~gY~f~~s~a~~~~~~~f~gl~lD~~nq~~~t~~ri~~W~~~~~~~~~~ 170 (172)
T PRK12359 122 EGYEFTSSKPLTADGQLFVGLALDEVNQYDLSDERIQQWCEQILLEMAE 170 (172)
T ss_pred CCcccccceeeEcCCCEEEEEEEcCCCchhhhHHHHHHHHHHHHHHHHh
Confidence 0 0 123332 3667899999998876643
No 88
>PRK06703 flavodoxin; Provisional
Probab=99.41 E-value=1.2e-12 Score=120.30 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=80.3
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 81 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~d~ 81 (555)
.|||++||||.|++|++++.|+++|... .+++++|+|||+||+.|++||.+++.++++|+++|++.+.+....+.
T Consensus 51 ~viigspt~~~g~~p~~~~~f~~~l~~~-----~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~ 125 (151)
T PRK06703 51 GIILGSYTWGDGDLPYEAEDFHEDLENI-----DLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIEL 125 (151)
T ss_pred cEEEEECCCCCCcCcHHHHHHHHHHhcC-----CCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEec
Confidence 5899999999999999999999999754 37799999999999999999999999999999999998877666655
Q ss_pred CC---CchhhHHHHHHHHHHHHH
Q 008747 82 DQ---CIEDDFSAWRELVWPELD 101 (555)
Q Consensus 82 ~~---~~~~~~~~W~~~l~~~l~ 101 (555)
.. ...+....|.+++.+.+.
T Consensus 126 ~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 126 APETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred CCCchhHHHHHHHHHHHHHHHHH
Confidence 33 234457788888776554
No 89
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.39 E-value=1.4e-12 Score=145.48 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=117.9
Q ss_pred CCChHHHHHHhcCCC---cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCC----CCc-CCCCce
Q 008747 316 KPPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP----MEK-SNDCSW 387 (555)
Q Consensus 316 ~~p~~~ll~~~~p~~---~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~----~~~-~~~~~~ 387 (555)
+..+||++..-+|.. +.|+|||+|+|..+++.++++|+.. |-.|+.|.+... .+. ......
T Consensus 338 ~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~~ 406 (722)
T PLN02844 338 KYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCIP 406 (722)
T ss_pred CcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccceE
Confidence 344788875444543 5799999998864456777766532 444666654322 111 111123
Q ss_pred eeEEEecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhh-cCCCCCeEEEEeccCCCCCCCcHHHHHHH-----
Q 008747 388 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNF----- 461 (555)
Q Consensus 388 v~v~~~~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~ly~del~~~----- 461 (555)
+.|..|.|.|..+....++++|||||||||||+|++++....... .....++.|+|++|+.+ |..|.+++...
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~~ 485 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQS 485 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHhH
Confidence 556667788766544457899999999999999999998753211 11235799999999997 99999998632
Q ss_pred HHcCCcceEEEEEccCCCCcccccchhhccHHHHHHH-H-hCCCEEEEecCCcch
Q 008747 462 VQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNM-L-SEGAYLYVCGDAKSM 514 (555)
Q Consensus 462 ~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~v~~~-l-~~~~~iyvCG~~~~M 514 (555)
.+.. ..+++...+|+......+++.+..- +...++ + .+..++.+||+..-+
T Consensus 486 ~~~~-~lkl~iyVTRE~~~~~rl~~~i~~~-~~~~~~~~~~~~~~~~i~G~~~~l 538 (722)
T PLN02844 486 SNQL-NLKLKVFVTQEEKPNATLRELLNQF-SQVQTVNFSTKCSRYAIHGLESFL 538 (722)
T ss_pred HHhc-CceEEEEECCCCCCCCchhhHhhcc-chhhhcCCCCCCCceEEeCCCchH
Confidence 2222 3367777899866555556655441 111221 2 356789999995443
No 90
>PLN02631 ferric-chelate reductase
Probab=99.36 E-value=1.3e-12 Score=145.02 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=104.1
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCC-CcCCCCceeeEE
Q 008747 316 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPM-EKSNDCSWAPIF 391 (555)
Q Consensus 316 ~~p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~-~~~~~~~~v~v~ 391 (555)
+.-+||++...+|. .+.|+|||+|+|...++.++++|+. .|..|++|.+.... ++ ...+.+.
T Consensus 334 ~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g~---~i~V~Ve 399 (699)
T PLN02631 334 HYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSID---SLEVSTE 399 (699)
T ss_pred cCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCCC---eeEEEEE
Confidence 44467776544454 3669999999986445778877753 37789999875432 11 1234455
Q ss_pred EecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCCCCcHHHHHHH------HHc
Q 008747 392 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNF------VQS 464 (555)
Q Consensus 392 ~~~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~del~~~------~~~ 464 (555)
+|.|.|..+.....++||||||+||||++|++++.......+ ...++++|+||.|+.+ |.+|.|||+.+ .++
T Consensus 400 GPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l~~ 478 (699)
T PLN02631 400 GPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDISR 478 (699)
T ss_pred CCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhhhhc
Confidence 677877655455578999999999999999999987543211 1234799999999987 99999999863 222
Q ss_pred CCcceEEEEEccCCC
Q 008747 465 GALSQLIVAFSREGP 479 (555)
Q Consensus 465 ~~~~~l~~a~Sr~~~ 479 (555)
...++...+||+++
T Consensus 479 -~ni~i~iyVTR~~~ 492 (699)
T PLN02631 479 -LNLRIEAYITREDK 492 (699)
T ss_pred -CceEEEEEEcCCCC
Confidence 23367888899754
No 91
>PRK09271 flavodoxin; Provisional
Probab=99.21 E-value=6.3e-11 Score=109.85 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=72.1
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCc--hHHHHHHHHHHHHHHHcCCccccccccc
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLG 79 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y--~~f~~~~~~~~~~l~~lGa~~i~~~~~~ 79 (555)
.+||+++|||.|.+|+++..|+++|.... .++++++|||+||+.| ++||.+++.++++|.+. .+..+.
T Consensus 54 ~vilgt~T~~~G~~p~~~~~f~~~l~~~~-----~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l~~ 123 (160)
T PRK09271 54 LYLLGTWTDNAGRTPPEMKRFIAELAETI-----GKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRLKI 123 (160)
T ss_pred EEEEECcccCCCcCCHHHHHHHHHHHHHh-----ccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCceee
Confidence 47888899999999999999999998653 3578999999999999 79999999999999864 243333
Q ss_pred cCCC---CchhhHHHHHHHHHHHH
Q 008747 80 DDDQ---CIEDDFSAWRELVWPEL 100 (555)
Q Consensus 80 d~~~---~~~~~~~~W~~~l~~~l 100 (555)
+... ...+.+.+|..++++++
T Consensus 124 ~~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 124 EQMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred ecCCccchhHHHHHHHHHHHHHHh
Confidence 4321 23467899999988877
No 92
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.20 E-value=9.1e-11 Score=109.57 Aligned_cols=70 Identities=23% Similarity=0.298 Sum_probs=62.4
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCC-Cc-hHHHHHHHHHHHHHHHcCCccccc
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNR-QY-EHFNKIAKVVDEILANQGAKRLVP 75 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds-~y-~~f~~~~~~~~~~l~~lGa~~i~~ 75 (555)
+.+||++||||.|++|+++..|++.|... .+++++++|||+||+ .| ++||.+++.++++|+++|++.+..
T Consensus 46 d~ii~gspty~~g~~p~~~~~fl~~l~~~-----~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~ 117 (167)
T TIGR01752 46 DKLILGTPTWGVGELQEDWEDFLPTLEEL-----DFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGF 117 (167)
T ss_pred CEEEEEecCCCCCcCcHHHHHHHHHhhcC-----CCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEce
Confidence 36899999999999999999999988654 478999999999997 58 599999999999999999987744
No 93
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.16 E-value=1e-10 Score=105.96 Aligned_cols=82 Identities=15% Similarity=0.249 Sum_probs=66.1
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCc--hHHHHHHHHHHHHHHHcCCccccccccc
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLG 79 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y--~~f~~~~~~~~~~l~~lGa~~i~~~~~~ 79 (555)
.+||.+||||.|.+|+++..|+++|.. ++++|||||+||+.| ++||.++++++++|.+++ |..+.
T Consensus 53 ~iilgs~t~~~g~~p~~~~~fl~~l~~--------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~-----~~~~i 119 (140)
T TIGR01754 53 LVFLGTWTWERGRTPDEMKDFIAELGY--------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSH-----PVLKI 119 (140)
T ss_pred EEEEEcCeeCCCcCCHHHHHHHHHhcc--------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcC-----CceeE
Confidence 488999999999999999999999853 468999999999999 699999999999997762 33333
Q ss_pred cC---CCCchhhHHHHHHHH
Q 008747 80 DD---DQCIEDDFSAWRELV 96 (555)
Q Consensus 80 d~---~~~~~~~~~~W~~~l 96 (555)
+. ++...+.+..|.+.+
T Consensus 120 ~~~~~~~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 120 EQMPHGEQDGRAIYDWLEGV 139 (140)
T ss_pred ecCCcccccHHHHHHHHHHh
Confidence 33 223456678998865
No 94
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.14 E-value=1.7e-10 Score=104.12 Aligned_cols=89 Identities=21% Similarity=0.235 Sum_probs=72.5
Q ss_pred CeEEEEeccCCCCccC-ccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccc
Q 008747 1 MKIYVIGCRYGDGEPT-DNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 79 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p-~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~ 79 (555)
+.|||+++||+.|.+| ++++.|+++|... .+++++|+|||+|++.|+ ||.+++.++++|+++|++++.+....
T Consensus 47 d~iilgspty~~g~~p~~~~~~f~~~l~~~-----~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~ 120 (140)
T TIGR01753 47 DAVLLGCSTWGDEDLEQDDFEPFFEELEDI-----DLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKV 120 (140)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHhhhC-----CCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeee
Confidence 3589999999999999 9999999999754 378999999999999999 99999999999999999999875554
Q ss_pred cCCC--CchhhHHHHHHH
Q 008747 80 DDDQ--CIEDDFSAWREL 95 (555)
Q Consensus 80 d~~~--~~~~~~~~W~~~ 95 (555)
+... ...+....|.+.
T Consensus 121 ~~~p~~~~~~~~~~~~~~ 138 (140)
T TIGR01753 121 DGDPEEEDLDKCREFAKD 138 (140)
T ss_pred ecCCCHHHHHHHHHHHHH
Confidence 4322 222335556544
No 95
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.11 E-value=4e-10 Score=103.45 Aligned_cols=93 Identities=22% Similarity=0.310 Sum_probs=79.9
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchH-HHHHHHHHHHHHHHcC--Ccccccccc
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQG--AKRLVPVGL 78 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~-f~~~~~~~~~~l~~lG--a~~i~~~~~ 78 (555)
.++++++|||.|+.|+++.+|+..+... .+++++||+||+||+.|.. ||.+...+.+.|+..| +....++..
T Consensus 51 ~~~~g~~t~~~ge~~~~~~~f~~~~~~~-----~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~ 125 (151)
T COG0716 51 ELLLGTPTWGAGELPDDWYDFIEELEPI-----DFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLG 125 (151)
T ss_pred EEEEEeCCCCCCcCCccHHHHHHHhccc-----CcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccc
Confidence 5899999999999999999999999863 4899999999999999987 9999999999999999 666666555
Q ss_pred c--cC--CCCchhhHHHHHHHHHHH
Q 008747 79 G--DD--DQCIEDDFSAWRELVWPE 99 (555)
Q Consensus 79 ~--d~--~~~~~~~~~~W~~~l~~~ 99 (555)
. +. .+..++....|.++++..
T Consensus 126 ~~~~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 126 YIFDASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred eeccCCCCCccHHHHHHHHHHHHhh
Confidence 5 33 346778899999987764
No 96
>PRK06756 flavodoxin; Provisional
Probab=99.10 E-value=4.2e-10 Score=102.95 Aligned_cols=92 Identities=20% Similarity=0.218 Sum_probs=74.9
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCcccccccccc
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGD 80 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~d 80 (555)
+.|||+++|||.|.+|+++..|++.|... .++++++++||.|++.|..||.+.+.++++|.++|++.+.+.....
T Consensus 51 d~vi~gspt~~~g~~p~~~~~fl~~l~~~-----~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~ 125 (148)
T PRK06756 51 DGIILGAYTWGDGDLPDDFLDFYDAMDSI-----DLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVE 125 (148)
T ss_pred CeEEEEeCCCCCCCCcHHHHHHHHHHhcC-----CCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEe
Confidence 35899999999999999999999988654 3789999999999999999999999999999999999988766554
Q ss_pred CCCCchhhH---HHHHHHHHH
Q 008747 81 DDQCIEDDF---SAWRELVWP 98 (555)
Q Consensus 81 ~~~~~~~~~---~~W~~~l~~ 98 (555)
.. ..++++ ..|.+.+.+
T Consensus 126 ~~-p~~~d~~~~~~~~~~~~~ 145 (148)
T PRK06756 126 LT-PEDEDVEKCLQFGAEFVK 145 (148)
T ss_pred cC-CCHHHHHHHHHHHHHHHH
Confidence 32 234444 455555543
No 97
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=99.04 E-value=4.7e-10 Score=98.55 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=49.2
Q ss_pred EEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCc-hHHHHHHHHHHHHHHH
Q 008747 4 YVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILAN 67 (555)
Q Consensus 4 i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~~~~~l~~ 67 (555)
|+||+|||+|+.|+.+.+|++.+.+ +.++|||.||++| ++||.+++++.+++..
T Consensus 39 vliTyT~G~G~vP~~~~~Fle~~~n----------~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 39 VLITYTGGFGAVPKQTISFLNKKHN----------LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred EEEecCCCCCcCCHHHHHHHHhhhh----------cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 4559999999999999999988863 7899999999999 9999999999999887
No 98
>PRK09267 flavodoxin FldA; Validated
Probab=98.86 E-value=1.6e-08 Score=94.69 Aligned_cols=95 Identities=24% Similarity=0.359 Sum_probs=73.9
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCC-c-hHHHHHHHHHHHHHHHcCCcccccc--
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV-- 76 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~-y-~~f~~~~~~~~~~l~~lGa~~i~~~-- 76 (555)
+.|||++|||+.|.+|+++..|++.+... .|++++++|||+||+. | ++||.+.+.+++.|++.|++.+...
T Consensus 48 d~vi~g~pt~~~G~~~~~~~~fl~~~~~~-----~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~ 122 (169)
T PRK09267 48 DLLILGIPTWGYGELQCDWDDFLPELEEI-----DFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPT 122 (169)
T ss_pred CEEEEEecCcCCCCCCHHHHHHHHHHhcC-----CCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCC
Confidence 35899999999999999999998887543 4889999999999985 8 7999999999999999998765321
Q ss_pred -ccc-----------------cCCC---CchhhHHHHHHHHHHHH
Q 008747 77 -GLG-----------------DDDQ---CIEDDFSAWRELVWPEL 100 (555)
Q Consensus 77 -~~~-----------------d~~~---~~~~~~~~W~~~l~~~l 100 (555)
|.. |.+. -.++.++.|.++|.+.+
T Consensus 123 ~gy~~~~~~~~~~~~~~g~~~d~~~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 123 DGYTFEASKAVDDGKFVGLALDEDNQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred CCccccccceeeCCEEEEEEecCCCchhhhHHHHHHHHHHHHHHh
Confidence 111 1111 13567889998877653
No 99
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.85 E-value=1.1e-09 Score=105.42 Aligned_cols=180 Identities=18% Similarity=0.303 Sum_probs=101.3
Q ss_pred CChHHHHHHh--cCCC---cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEE
Q 008747 317 PPLGVFFAAI--VPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 391 (555)
Q Consensus 317 ~p~~~ll~~~--~p~~---~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 391 (555)
..+||++..+ .|++ .-|.||.|+......+.+.|.|+.+ -.|+.|+|+++-...|+. +.++
T Consensus 181 ~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~---------A~G~VS~~~H~~~KVGD~-----v~~S 246 (385)
T KOG3378|consen 181 AHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRV---------AGGVVSNFVHDNLKVGDI-----VGVS 246 (385)
T ss_pred CCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeeh---------hchhhHHHhhccccccce-----eecc
Confidence 3467776321 1322 1244555444333356677766543 349999999987766553 5677
Q ss_pred EecCCCCCCC---CCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcc
Q 008747 392 VRQSNFKLPA---DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 468 (555)
Q Consensus 392 ~~~~~F~lp~---~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~ 468 (555)
-|.|+|.... +.++|++++|+|+||+|++++++...... ..|- =+-+.+.+..--+.. +
T Consensus 247 ~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~-------------~~RP---~~~~~~~~~~K~k~~-~- 308 (385)
T KOG3378|consen 247 PPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLCY-------------SSRP---FKQWLEQLKLKYKEN-L- 308 (385)
T ss_pred CCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhcC-------------CCCc---HHHHHHHHHHHHHHH-H-
Confidence 7789997653 45699999999999999999999865421 1121 011111111100000 0
Q ss_pred eEEEEEccCCC--Ccccccchhhc--cHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHc
Q 008747 469 QLIVAFSREGP--TKEYVQHKMME--KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQ 529 (555)
Q Consensus 469 ~l~~a~Sr~~~--~k~yVq~~l~~--~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~ 529 (555)
++.--||.+.. ++.-|...+.. +.+.+.++-...++||.||| ...++.|...|.++..+-
T Consensus 309 K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~~s~~DiY~~G~-~~~M~~~~~~L~~L~~~~ 372 (385)
T KOG3378|consen 309 KLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLDLSECDIYMLGP-NNYMRFVKQELVKLGVEP 372 (385)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcChhhCceeeeCc-HHHHHHHHHHHHHhcCCc
Confidence 11111222111 22333332222 12223332235799999999 788999999998876543
No 100
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.67 E-value=3.9e-08 Score=90.44 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=47.3
Q ss_pred CeEEEccCCccchhHHHHHHHHHHHh-hcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcC--CcceEEEEEccC
Q 008747 406 PIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG--ALSQLIVAFSRE 477 (555)
Q Consensus 406 piimIa~GTGiAPf~s~l~~~~~~~~-~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~--~~~~l~~a~Sr~ 477 (555)
.++|||||+||+|+++++++...... ......++.|+|-+|+.+.=..|.++|.++.... ...++...++++
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~ 77 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRE 77 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT-
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCC
Confidence 38999999999999999999887654 2233578999999999873335775565544321 233566666665
No 101
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=98.60 E-value=9.8e-08 Score=85.30 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=60.5
Q ss_pred eEEEEeccCCC----CccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCc-hHHHHHHHHHHHHHHHcCCcccccc
Q 008747 2 KIYVIGCRYGD----GEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPV 76 (555)
Q Consensus 2 ~~i~~~sT~g~----G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~~~~~l~~lGa~~i~~~ 76 (555)
.+|++++|||+ |+.|+...+|++.+.+. ...++|+|.||++| ++||.+++.+.+++. ..- +
T Consensus 41 ~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~n~--------~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~---vp~---l 106 (134)
T PRK03600 41 PYILITPTYGGGGTAGAVPKQVIRFLNDEHNR--------KLLRGVIASGNRNFGDAFALAGDVISAKCQ---VPL---L 106 (134)
T ss_pred CEEEEEeccCCCCcCCcccHHHHHHHhccccC--------CcEEEEEEecCchHHHHHHHHHHHHHHHhC---CCe---E
Confidence 37999999999 69999999987774322 35899999999999 899999999999876 211 2
Q ss_pred ccccCCCC---chhhHHHHHHHHHH
Q 008747 77 GLGDDDQC---IEDDFSAWRELVWP 98 (555)
Q Consensus 77 ~~~d~~~~---~~~~~~~W~~~l~~ 98 (555)
.+. +..+ ..+.+..|++++|.
T Consensus 107 ~k~-El~gt~~Dv~~~~~~~~~~~~ 130 (134)
T PRK03600 107 YRF-ELSGTNEDVENVRKGVEEFWQ 130 (134)
T ss_pred EEE-ecCCCHHHHHHHHHHHHHHHh
Confidence 222 2233 33346778777765
No 102
>PRK02551 flavoprotein NrdI; Provisional
Probab=98.38 E-value=4.9e-07 Score=82.35 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=55.6
Q ss_pred EEEEeccC-CCCccCccHHH------HHHHHHhhcCCCCCCCCceEEEEeecCCCc-hHHHHHHHHHHHHHHHcCCcccc
Q 008747 3 IYVIGCRY-GDGEPTDNAAR------FYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLV 74 (555)
Q Consensus 3 ~i~~~sT~-g~G~~p~n~~~------f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~~~~~l~~lGa~~i~ 74 (555)
.|+|++|| |.|.+|+|+.. ..++|... ...+..++|||+||++| ++||.+|+++++.. +.
T Consensus 57 ~vli~pTY~~gG~~~~~~~~~~vp~~v~dFL~~~-----~N~~~~~gVigsGNrNfg~~F~~aa~~ia~~~---~v---- 124 (154)
T PRK02551 57 FVAFLPTYLEGGNGIDNGDVEILTTPLGDFIAYH-----DNAKRCLGIIGSGNRNFNNQYCLTAKQYAKRF---GF---- 124 (154)
T ss_pred EEEEEeeecCCCCCcccCccccchHHHHHHHcch-----hhhhheEEEEeecccHHHHHHHHHHHHHHHHc---CC----
Confidence 68999999 88888877654 22333222 13578899999999999 79999999999764 43
Q ss_pred ccccccCCCCchhhHHHHHHH
Q 008747 75 PVGLGDDDQCIEDDFSAWREL 95 (555)
Q Consensus 75 ~~~~~d~~~~~~~~~~~W~~~ 95 (555)
|+..-=+-.|...|++...+.
T Consensus 125 P~L~~fEl~GT~~Dv~~v~~~ 145 (154)
T PRK02551 125 PMLADFELRGTPSDIERIAAI 145 (154)
T ss_pred CEEEEeeccCCHHHHHHHHHH
Confidence 333222445666665554433
No 103
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.16 E-value=1.6e-05 Score=89.30 Aligned_cols=193 Identities=15% Similarity=0.283 Sum_probs=108.0
Q ss_pred hHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCC--Cc-CCC----Ccee
Q 008747 319 LGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPM--EK-SND----CSWA 388 (555)
Q Consensus 319 ~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~--~~-~~~----~~~v 388 (555)
+||++-.-+|. ++-+||||+|+| +++.+.+.|+.. |..|.-|.+.... .+ ... ...+
T Consensus 384 ~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~~i 450 (646)
T KOG0039|consen 384 PGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFPKI 450 (646)
T ss_pred CCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCceE
Confidence 56654332354 578999999999 467888777654 6667666654321 00 001 1234
Q ss_pred eEEEecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcC------------CCCCeEEEEeccCCCCCC-CcH
Q 008747 389 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA------------ELGPSLLFFGCRNRKMDY-IYE 455 (555)
Q Consensus 389 ~v~~~~~~F~lp~~~~~piimIa~GTGiAPf~s~l~~~~~~~~~~~------------~~~~~~L~~G~R~~~~d~-ly~ 455 (555)
.|.+|.|.=..+-..-.-++|||+|.|++||.|++++.......+. ..+++..+|-||... ++ .+.
T Consensus 451 ~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~-sf~wf~ 529 (646)
T KOG0039|consen 451 LIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQR-SFEWFK 529 (646)
T ss_pred EEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEecccc-chHHHH
Confidence 4444433211111122347999999999999999999987543332 245677888898876 54 355
Q ss_pred HHHHHHH---HcCCcceEEEEEcc--C--CC----------------Cccccc------chhhccHHHHHHHH---hCC-
Q 008747 456 DELNNFV---QSGALSQLIVAFSR--E--GP----------------TKEYVQ------HKMMEKSSDIWNML---SEG- 502 (555)
Q Consensus 456 del~~~~---~~~~~~~l~~a~Sr--~--~~----------------~k~yVq------~~l~~~~~~v~~~l---~~~- 502 (555)
+.+.+.. ..+.. .++...+. . .. .+..++ +--+-+-+++.+-+ .++
T Consensus 530 ~~l~~v~~~~~~~~~-e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~~ 608 (646)
T KOG0039|consen 530 GLLTEVEEYDSSGVI-ELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPNV 608 (646)
T ss_pred HHHHHHHHHHhcCCc-hhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeeeCCCCCHHHHHHHHHhhCCCc
Confidence 5555544 22222 22222221 0 00 011111 11122233444333 122
Q ss_pred -CEEEEecCCcchHHHHHHHHHHHHH
Q 008747 503 -AYLYVCGDAKSMARDVHRTLHTIVQ 527 (555)
Q Consensus 503 -~~iyvCG~~~~M~~~v~~~L~~i~~ 527 (555)
.-|+.||| +.|.+.+++...+...
T Consensus 609 ~vgVf~CGp-~~l~~~~~~~~~~~~~ 633 (646)
T KOG0039|consen 609 RVGVFSCGP-PGLVKELRKLCNDFSS 633 (646)
T ss_pred eEEEEEeCC-HHHHHHHHHHHHhccc
Confidence 58999999 8999999988777543
No 104
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=97.87 E-value=3e-05 Score=82.55 Aligned_cols=88 Identities=16% Similarity=0.061 Sum_probs=68.7
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 81 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~d~ 81 (555)
.+||.++||+.|.+|+ +..|+++|... .++++.+|+||. |..||.+++.+.++|+++|++.+.+......
T Consensus 303 ~ii~GspT~~~~~~~~-~~~~l~~l~~~-----~~~~K~~a~FGs----ygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~ 372 (394)
T PRK11921 303 AILVGSSTINRGILSS-TAAILEEIKGL-----GFKNKKAAAFGS----YGWSGESVKIITERLKKAGFEIVNDGIRELW 372 (394)
T ss_pred EEEEECCCcCccccHH-HHHHHHHhhcc-----CcCCCEEEEEec----CCCccHHHHHHHHHHHHCCCEEccCcEEEEe
Confidence 5899999999998865 99999998866 378999999997 7778999999999999999999876554443
Q ss_pred CC--CchhhHHHHHHHHHHH
Q 008747 82 DQ--CIEDDFSAWRELVWPE 99 (555)
Q Consensus 82 ~~--~~~~~~~~W~~~l~~~ 99 (555)
.- ...+.+.+|.+.+.+.
T Consensus 373 ~p~~~~~~~~~~~g~~la~~ 392 (394)
T PRK11921 373 NPDDEALDRCRSFGENFAES 392 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 22 2233456777666543
No 105
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.85 E-value=3e-05 Score=89.07 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=60.3
Q ss_pred ChHHHHHHhcC-----CC-cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEE
Q 008747 318 PLGVFFAAIVP-----RL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 391 (555)
Q Consensus 318 p~~~ll~~~~p-----~~-~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 391 (555)
-+|||+.+-.+ .+ .||++||++... ..+.+++++.++ |..|.+|+++.+|+. +.+.
T Consensus 820 kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~-e~g~It~i~rvV-----------GkgT~~Ls~l~~Gd~------v~v~ 881 (1028)
T PRK06567 820 KFGQFFRLQNYSEDAAKLIEPVALSPIDIDV-EKGLISFIVFEV-----------GKSTSLCKTLSENEK------VVLM 881 (1028)
T ss_pred CCCceEEEEeCCCCCccccCceeEEeeccCC-CCCEEEEEEEEE-----------ChHHHHHhcCCCCCE------EEEE
Confidence 47898844332 12 667999999765 356799888877 889999999987653 4566
Q ss_pred EecC-CCCCCCCCCCCeEEEccCCccch
Q 008747 392 VRQS-NFKLPADAKVPIIMIGPGTGLAP 418 (555)
Q Consensus 392 ~~~~-~F~lp~~~~~piimIa~GTGiAP 418 (555)
+|.| .|.++. .+.+++||||+|+||
T Consensus 882 GPLG~pF~i~~--~k~vLLVgGGVGiAp 907 (1028)
T PRK06567 882 GPTGSPLEIPQ--NKKIVIVDFEVGNIG 907 (1028)
T ss_pred cccCCCCCCCC--CCeEEEEEccccHHH
Confidence 6744 587763 356999999999998
No 106
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=97.36 E-value=0.0004 Score=75.66 Aligned_cols=89 Identities=8% Similarity=-0.073 Sum_probs=67.7
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 81 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~d~ 81 (555)
.|||.|+||+.|.+| .++.|++.|... .++|+.+++||. |.-+|.+++.+.++|+++|++.+ +..+...
T Consensus 307 ~vilGspT~~~~~~p-~~~~fl~~l~~~-----~l~gK~~~vFGS----ygw~g~a~~~~~~~l~~~g~~~~-~~l~~~~ 375 (479)
T PRK05452 307 GVLVGSSTMNNVMMP-KIAGLLEEITGL-----RFRNKRASAFGS----HGWSGGAVDRLSTRLQDAGFEMS-LSLKAKW 375 (479)
T ss_pred EEEEECCccCCcchH-HHHHHHHHhhcc-----CcCCCEEEEEEC----CCcCcHHHHHHHHHHHHCCCEEe-ccEEEEe
Confidence 589999999988887 699999998765 378999999996 55689999999999999999875 4333333
Q ss_pred CC--CchhhHHHHHHHHHHHHH
Q 008747 82 DQ--CIEDDFSAWRELVWPELD 101 (555)
Q Consensus 82 ~~--~~~~~~~~W~~~l~~~l~ 101 (555)
.- ...+.+..+.+.|.+++.
T Consensus 376 ~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 376 RPDQDALELCREHGREIARQWA 397 (479)
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 21 233445677777766665
No 107
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=97.31 E-value=0.00036 Score=61.08 Aligned_cols=74 Identities=28% Similarity=0.400 Sum_probs=49.5
Q ss_pred EEEEeccCCCCc----cCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCc-hHHHHHHHHHHHHHHHcCCccccccc
Q 008747 3 IYVIGCRYGDGE----PTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVG 77 (555)
Q Consensus 3 ~i~~~sT~g~G~----~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~~~~~l~~lGa~~i~~~~ 77 (555)
.|+|++|||.|+ .|....+|.+.-.+. ..-.+|+|-||++| +.||.+|+++.++. |. |+.
T Consensus 41 ~vLitpTy~~G~~~~~vp~~v~~FL~~~~N~--------~~l~GVigSGNrNfg~~f~~aa~~ia~ky---~V----Pll 105 (122)
T PF07972_consen 41 FVLITPTYGFGENDGGVPKQVIRFLENPDNR--------KLLRGVIGSGNRNFGDNFCLAADKIAEKY---GV----PLL 105 (122)
T ss_dssp EEEEEE-BTTTBSSTSS-HHHHHHHHSHHHG--------GGEEEEEEEE-GGGGGGTTHHHHHHHHHH---T------EE
T ss_pred EEEEecccCCCCCCCCCCHHHHHHHHHHHHH--------hhheeEEecCCcHHHHHHHHHHHHHHHHc---CC----CEE
Confidence 689999999999 999888887766544 24478999999999 79999999988765 32 322
Q ss_pred cccCCCCchhhHHH
Q 008747 78 LGDDDQCIEDDFSA 91 (555)
Q Consensus 78 ~~d~~~~~~~~~~~ 91 (555)
.-=+-.|.++|.+.
T Consensus 106 ~kfEl~Gt~~Dv~~ 119 (122)
T PF07972_consen 106 YKFELSGTPEDVER 119 (122)
T ss_dssp EEEETT--HHHHHH
T ss_pred EEEecCCCHHHHHH
Confidence 22234555666554
No 108
>PRK05568 flavodoxin; Provisional
Probab=97.20 E-value=0.0014 Score=59.13 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=50.4
Q ss_pred CeEEEEeccCCCCccC-ccHHHHHHHHHhhcCCCCCCCCceEEEEee-cCCCchHHHHHHHHHHHHHHHcCCccccc
Q 008747 1 MKIYVIGCRYGDGEPT-DNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVP 75 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p-~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~~~~~l~~lGa~~i~~ 75 (555)
+.|||.++||+.|.+| ..++.|++.+.. .++++++++||. |++. ..+.+.+.+.|+++|++.+.+
T Consensus 50 d~iilgsp~y~~~~~~~~~~~~f~~~~~~------~~~~k~~~~f~t~G~~~----~~~~~~~~~~l~~~g~~~~~~ 116 (142)
T PRK05568 50 DVVALGSPAMGDEVLEEGEMEPFVESISS------LVKGKKLVLFGSYGWGD----GEWMRDWVERMEGYGANLVNE 116 (142)
T ss_pred CEEEEECCccCcccccchhHHHHHHHhhh------hhCCCEEEEEEccCCCC----ChHHHHHHHHHHHCCCEEeCC
Confidence 3689999999988864 789999988753 267899999998 3221 234688889999999887765
No 109
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=97.11 E-value=0.00013 Score=61.59 Aligned_cols=67 Identities=24% Similarity=0.239 Sum_probs=48.3
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEE
Q 008747 316 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 392 (555)
Q Consensus 316 ~~p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 392 (555)
...+||++.+.++. ...|+|||+|.|. ..+.++|+|+.. ..|.+|+||+++.+|+ .+.+..
T Consensus 29 ~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~g 92 (99)
T PF00970_consen 29 DFKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKRY---------PNGRVSRYLHQLKPGD------EVEIRG 92 (99)
T ss_dssp SSTTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEEC---------TTSHHHHHHHTSCTTS------EEEEEE
T ss_pred ccCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEec---------cCCHHHHHHHhCCCCC------EEEEEE
Confidence 34578887655552 2359999999996 457899888754 3488999999976654 367888
Q ss_pred ecCCCC
Q 008747 393 RQSNFK 398 (555)
Q Consensus 393 ~~~~F~ 398 (555)
|.|.|.
T Consensus 93 P~G~f~ 98 (99)
T PF00970_consen 93 PYGNFT 98 (99)
T ss_dssp EESSEE
T ss_pred cccccC
Confidence 888874
No 110
>PRK05569 flavodoxin; Provisional
Probab=96.90 E-value=0.0035 Score=56.50 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=52.8
Q ss_pred CeEEEEeccCCCCcc-CccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccccc
Q 008747 1 MKIYVIGCRYGDGEP-TDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 75 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~-p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~ 75 (555)
+.|||.++||+.|.+ |+.++.|++.|... .++++++++||.+...+ +.+.+.+.+.|.+.|++.+-+
T Consensus 50 d~iilgsPty~~~~~~~~~~~~~~~~l~~~-----~~~~K~v~~f~t~g~~~---~~~~~~~~~~l~~~g~~~~~~ 117 (141)
T PRK05569 50 DAVAFGSPSMDNNNIEQEEMAPFLDQFKLT-----PNENKKCILFGSYGWDN---GEFMKLWKDRMKDYGFNVIGD 117 (141)
T ss_pred CEEEEECCCcCCCcCChHHHHHHHHHhhcc-----CcCCCEEEEEeCCCCCC---CcHHHHHHHHHHHCCCeEeee
Confidence 358999999998876 48999999998754 26899999999875443 345677889999999876544
No 111
>PRK06242 flavodoxin; Provisional
Probab=96.65 E-value=0.0058 Score=55.58 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=51.2
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccccc
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 75 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~ 75 (555)
+.|||.++|| .|.+|+.++.|.+.+.. +.++++++||.+......+ .+.+.+.|..+|++.+..
T Consensus 45 d~ii~g~pvy-~~~~~~~~~~fl~~~~~-------~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 45 DLIGFGSGIY-FGKFHKSLLKLIEKLPP-------VSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGE 108 (150)
T ss_pred CEEEEeCchh-cCCcCHHHHHHHHhhhh-------hcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEE
Confidence 3589999999 58888889998877742 4689999999988765433 688999999999987644
No 112
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.0078 Score=52.98 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=57.6
Q ss_pred EEEEeccCCCC----ccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCc-hHHHHHHHHHHHHHHHcCCccccccc
Q 008747 3 IYVIGCRYGDG----EPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVG 77 (555)
Q Consensus 3 ~i~~~sT~g~G----~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~~~~~l~~lGa~~i~~~~ 77 (555)
.|+|++|||.| +.|.--.+| |.+.+ -..+--+|.|-||++| ..||.+|+.+.+++ |. |+.
T Consensus 43 yvlitpTyg~G~~~~~Vp~~vi~F---Ln~~~-----Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~v----PlL 107 (141)
T COG1780 43 YVLITPTYGGGGTVGAVPKQVIRF---LNNEH-----NRALCRGVIASGNRNFGDNFALAGDVISAKC---GV----PLL 107 (141)
T ss_pred eEEEeccccCCCccCccCHHHHHH---hcccc-----chhheEEEEecCCccHHHHHHHHHHHHHHHh---CC----CEE
Confidence 58999999999 788765554 54322 2345678999999999 78999999887754 43 333
Q ss_pred cccCCCCchh---hHHHHHHHHHHHHH
Q 008747 78 LGDDDQCIED---DFSAWRELVWPELD 101 (555)
Q Consensus 78 ~~d~~~~~~~---~~~~W~~~l~~~l~ 101 (555)
.-=+-.|..+ .+..|+..+|+...
T Consensus 108 y~FEL~GT~~Dv~~v~~~v~~~~~~~~ 134 (141)
T COG1780 108 YRFELLGTAEDVAAVRKGVTEFWKRAP 134 (141)
T ss_pred EEEeccCCHHHHHHHHHHHHHHHHhCC
Confidence 2223344444 46788888887443
No 113
>PRK07116 flavodoxin; Provisional
Probab=94.37 E-value=0.15 Score=47.02 Aligned_cols=80 Identities=9% Similarity=0.034 Sum_probs=50.8
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEee-cCCCchHHHHHHHHHHHHHHHcCCccccccccc
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 79 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~ 79 (555)
+.|||++++|+ |.+|.-.+.|.+.+ .++++++++|+. |.+.+ +.+...+.+.+.+.+ +.+-...
T Consensus 78 D~Iiig~Pv~~-~~~p~~v~~fl~~~--------~l~~k~v~~f~T~g~~~~---g~~~~~~~~~~~~~~---~~~~~~~ 142 (160)
T PRK07116 78 DVIFLGFPIWW-YVAPRIINTFLESY--------DFSGKTVIPFATSGGSGI---GNAEKELKKSYPDAN---WKEGRLL 142 (160)
T ss_pred CEEEEECChhc-cccHHHHHHHHHhc--------CCCCCEEEEEEeCCCCCc---CcHHHHHHHHCCcCc---cccCeee
Confidence 36899999995 88888888886543 378899999999 76664 334444555443322 2222222
Q ss_pred cCCCCchhhHHHHHHHH
Q 008747 80 DDDQCIEDDFSAWRELV 96 (555)
Q Consensus 80 d~~~~~~~~~~~W~~~l 96 (555)
+. ...+++++.|++++
T Consensus 143 ~~-~~~~~~i~~wl~~~ 158 (160)
T PRK07116 143 NG-GASKEEIKEWINKL 158 (160)
T ss_pred cC-CCcHHHHHHHHHHc
Confidence 21 12356799998764
No 114
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=94.23 E-value=0.16 Score=48.62 Aligned_cols=70 Identities=13% Similarity=-0.091 Sum_probs=57.0
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 73 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i 73 (555)
.|||.++|| .|.+|..++.|++++..... ...+.++..++|+.+....--...+...+...|..+|..-+
T Consensus 71 ~ii~GSPty-~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv 140 (197)
T TIGR01755 71 AIIFGTPTR-FGNMASQMRNFLDQTGGLWA-SGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIV 140 (197)
T ss_pred EEEEEeccc-ccCccHHHHHHHHhcccccc-ccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEe
Confidence 589999998 79999999999999976532 23588999999999887766677777888888899998654
No 115
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=93.53 E-value=0.26 Score=47.25 Aligned_cols=71 Identities=13% Similarity=-0.074 Sum_probs=53.8
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 73 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i 73 (555)
+.|||.++|| +|.+|..++.|++++..... ...+.++.+++||...+..----...+.+...|..+|..-+
T Consensus 71 D~ii~gsPty-~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv 141 (200)
T PRK03767 71 DAIIFGTPTR-FGNMAGQMRNFLDQTGGLWA-KGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIV 141 (200)
T ss_pred CEEEEEeccc-CCCchHHHHHHHHHhccccc-cCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEe
Confidence 3589999999 89999999999999975532 23588999999999776543333345667777788998654
No 116
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=92.60 E-value=0.76 Score=45.71 Aligned_cols=171 Identities=20% Similarity=0.322 Sum_probs=97.0
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEE
Q 008747 330 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 409 (555)
Q Consensus 330 ~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~F~lp~~~~~piim 409 (555)
.-+|.|||.+-.. ..+++. |-+|... ..|.+|.|-.+..+|+. +.+..+.|.+..+.. ..-++|
T Consensus 85 ~~~R~YTiR~~d~-~~~e~~--vDfVlH~------~~gpas~WA~~a~~GD~------l~i~GP~g~~~p~~~-~~~~lL 148 (265)
T COG2375 85 PPQRTYTIRAVDA-AAGELD--VDFVLHG------EGGPASRWARTAQPGDT------LTIMGPRGSLVPPEA-ADWYLL 148 (265)
T ss_pred CCcccceeeeecc-cccEEE--EEEEEcC------CCCcchhhHhhCCCCCE------EEEeCCCCCCCCCCC-cceEEE
Confidence 3479999986532 234555 4444211 34889999999888653 556667777665543 455999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCCCCcccccchhh
Q 008747 410 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMM 489 (555)
Q Consensus 410 Ia~GTGiAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~ 489 (555)
||==|++--+.++|++.-. ..+...|.-..+.. |. .++ .....+ .+... .|.+.. +.| .+.
T Consensus 149 igDetAlPAIa~iLE~lp~-------~~~~~a~lev~d~a-d~---~~l---~~~~~l-~~~Wl-~r~~~~--~~~-ll~ 209 (265)
T COG2375 149 IGDETALPAIARILETLPA-------DTPAEAFLEVDDAA-DR---DEL---PSPDDL-ELEWL-ARDDAP--TEQ-LLA 209 (265)
T ss_pred eccccchHHHHHHHHhCCC-------CCceEEEEEeCChH-Hh---hcc---CCCCce-eEEEe-cCCCcc--chH-HHH
Confidence 9999999888888887532 13456677777665 43 112 122222 23333 232211 111 111
Q ss_pred ccHHHHHHH-Hh-CCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHH--HHHHHHH
Q 008747 490 EKSSDIWNM-LS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK--AESMVKN 543 (555)
Q Consensus 490 ~~~~~v~~~-l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~--a~~~~~~ 543 (555)
+. +.+. +. .+.++||.|- ..|++.+++.| ..+.|++... |.-|++.
T Consensus 210 ~a---~~~~~~P~~~~~vwiagE-~~~v~~~Rk~L----~~e~g~dk~~i~a~gYW~~ 259 (265)
T COG2375 210 AA---LAQAALPAGDYYVWIAGE-ASAVKAIRKFL----RNERGFDKSRVRAIGYWRR 259 (265)
T ss_pred HH---HhcccCCCCceEEEEecc-HHHHHHHHHHH----hhhcCCCHHHhhhhhhhhc
Confidence 11 1111 22 2479999997 67777665554 4566776654 3335443
No 117
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=92.45 E-value=0.052 Score=57.14 Aligned_cols=63 Identities=32% Similarity=0.538 Sum_probs=55.1
Q ss_pred EEeecCCCc-h-----HHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHHHhhhC
Q 008747 43 VFGLGNRQY-E-----HFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDNLLR 105 (555)
Q Consensus 43 vfGlGds~y-~-----~f~~~~~~~~~~l~~lGa~~i~~~~~~d~~~--~~~~~~~~W~~~l~~~l~~~~~ 105 (555)
|||+||+.| | .|++-.|.+..+|.+|+|.....+|.|+++. +...+...|--.||++|..-..
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~~ 71 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGIN 71 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCCC
Confidence 699999998 3 6999999999999999999999999998854 6777889999999999986543
No 118
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=89.63 E-value=2.3 Score=39.62 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=52.1
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCcccc
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 74 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~ 74 (555)
+.+||+++.| +|..|.-.+.|.+|+.. ..+.++.+++++.| ..+.++-..-..+...|..+|+..+.
T Consensus 67 D~iI~~sP~Y-~~sip~~LK~~iD~~~~-----~~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~~ 133 (171)
T TIGR03567 67 DGVVVATPVY-KASYSGVLKALLDLLPQ-----RALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHIL 133 (171)
T ss_pred CEEEEECCcc-cCCCCHHHHHHHHhCCh-----hhhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCcccc
Confidence 3589999999 89999999999999842 24888989988888 45655554434588899999996543
No 119
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=89.27 E-value=1.1 Score=40.55 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=52.8
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 73 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i 73 (555)
+.+||++++| .|.+|.-++.|++++.. .....+.++.+++++.|-+...... +...+...|..+|+.-+
T Consensus 72 D~iI~~sP~y-~~~~s~~lK~~lD~~~~--~~~~~~~~K~~~~i~~~g~~~g~~~-~~~~l~~~~~~~~~~~~ 140 (152)
T PF03358_consen 72 DGIIFASPVY-NGSVSGQLKNFLDRLSC--WFRRALRGKPVAIIAVGGGRRGGLR-ALEQLRQILDYLGMIVV 140 (152)
T ss_dssp SEEEEEEEEB-TTBE-HHHHHHHHTHHH--THTTTTTTSEEEEEEEESSSSTTHH-HHHHHHHHHHHTTBEEE
T ss_pred CeEEEeecEE-cCcCChhhhHHHHHhcc--ccccccCCCEEEEEEEecCCcHHHH-HHHHHHHHHHHCCCEEc
Confidence 3589999999 79999999999999974 1234689999999999876553332 55777888888998654
No 120
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=89.21 E-value=3.1 Score=39.54 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=52.9
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 73 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i 73 (555)
+.+||+++.| +|..|.-.+.|++|+.. ..|.++.+++++.| ....+.-..-..+...|..+||..+
T Consensus 68 D~iIi~tP~Y-~~s~pg~LKn~iD~l~~-----~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 68 DGLIVATPVY-KASFSGALKTLLDLLPE-----RALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred CEEEEECCcc-CCCCCHHHHHHHHhCCh-----hhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 3589999999 89999999999999943 35889999999998 5555555444567788899999754
No 121
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=87.19 E-value=0.92 Score=42.60 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=33.0
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeec
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLG 47 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlG 47 (555)
+.|||.+||| .|.++..++.|.+.... .|+++++++|++|
T Consensus 48 D~vIlGspi~-~G~~~~~~~~fl~~~~~------~l~~K~v~~F~v~ 87 (177)
T PRK11104 48 DRVVIGASIR-YGHFHSALYKFVKKHAT------QLNQMPSAFFSVN 87 (177)
T ss_pred CEEEEECccc-cCCcCHHHHHHHHHHHH------HhCCCeEEEEEec
Confidence 3588999998 78899988888876543 3889999999999
No 122
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=81.69 E-value=11 Score=34.93 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=49.7
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 73 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i 73 (555)
+-+||+++.| +|..|.-.+.|.+|+.. ..+.++..++++.|..... ...+-..+...|..+|+..+
T Consensus 70 D~iIi~tP~Y-~~s~~~~LKn~lD~~~~-----~~l~~K~~~~v~~~g~~~~-~~~~~~~l~~~~~~l~~~~~ 135 (174)
T TIGR03566 70 DLLVVGSPVY-RGSYTGLFKHLFDLVDP-----NALIGKPVLLAATGGSERH-ALMVEHQLRPLFGFFQALTL 135 (174)
T ss_pred CEEEEECCcC-cCcCcHHHHHHHHhcCH-----hHhCCCEEEEEEecCCccc-hHHHHHHHHHHHHHhCcccc
Confidence 3589999999 79999999999999853 2488999999999765432 12234446778888998654
No 123
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=81.01 E-value=4.8 Score=36.18 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=35.4
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCC
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNR 49 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds 49 (555)
+.|||.+++|+ |..|..+.+|.+.+.+. |+++++++|..|-+
T Consensus 45 D~vi~gspiy~-g~~~~~~~~fi~~~~~~------l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 45 DAVIFGSPIYA-GRIPGEMREFIKKNKDN------LKNKKVALFSVGGS 86 (143)
T ss_pred CEEEEEEEEEC-CcCCHHHHHHHHHHHHH------HcCCcEEEEEEeCC
Confidence 46999999995 88999999999987643 78899999998765
No 124
>PRK13556 azoreductase; Provisional
Probab=80.59 E-value=15 Score=35.21 Aligned_cols=98 Identities=8% Similarity=0.024 Sum_probs=64.1
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcC--------CCCCCCCceEEEEeecCCCc-----hHHHHHHHHHHHHHHH
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKE--------GGEWLQKLKYGVFGLGNRQY-----EHFNKIAKVVDEILAN 67 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~--------~~~~l~~~~~avfGlGds~y-----~~f~~~~~~~~~~l~~ 67 (555)
+.|||+++-| ++.+|.-.+.+++++..... +...|.+++..|+...-..| ..+..+...+...|.-
T Consensus 91 D~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~~~~l~~il~~ 169 (208)
T PRK13556 91 DKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMAVKYVASMMGF 169 (208)
T ss_pred CEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhccHHHHHHHHHh
Confidence 4689999999 78899999999999986521 12358899999987633345 3555566778889999
Q ss_pred cCCccccccccccCCCCchhhHHHHHHHHHHHH
Q 008747 68 QGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 100 (555)
Q Consensus 68 lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l 100 (555)
+|++.+ +....+......+..+.++++....+
T Consensus 170 ~G~~~~-~~v~~~~~~~~~~~~~~~~~~a~~~~ 201 (208)
T PRK13556 170 FGVTNM-ETVVIEGHNQFPDKAEEIITAGLEEA 201 (208)
T ss_pred cCCCce-eEEEEehhhcChhHHHHHHHHHHHHH
Confidence 998764 33333222222333445544433333
No 125
>PRK00170 azoreductase; Reviewed
Probab=75.61 E-value=21 Score=33.71 Aligned_cols=98 Identities=7% Similarity=-0.089 Sum_probs=60.1
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhc--------CCCCCCCCceEEEEeecCCCc--hHHHHHHHHHHHHHHHcCC
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQK--------EGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGA 70 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~--------~~~~~l~~~~~avfGlGds~y--~~f~~~~~~~~~~l~~lGa 70 (555)
+.|||+++-| ++..|.-.+.|.+++.... .+...+.++++.++......+ ..+..+...+...|.-+|.
T Consensus 88 D~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~~~~~~G~ 166 (201)
T PRK00170 88 DKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKTFLGFIGI 166 (201)
T ss_pred CEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHHHHHhcCC
Confidence 3689999999 7889999999999986421 112357899998888633222 1224455667778888998
Q ss_pred ccccccccccCCCCchhhHHHHHHHHHHHH
Q 008747 71 KRLVPVGLGDDDQCIEDDFSAWRELVWPEL 100 (555)
Q Consensus 71 ~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l 100 (555)
+.+-.+. +..-....+.-+.|++.....+
T Consensus 167 ~~~~~~~-~~g~~~~~~~~~~~~~~a~~~~ 195 (201)
T PRK00170 167 TDVEFVF-AEGHNYGPEKAAKIISAAKAAA 195 (201)
T ss_pred CceEEEE-EecccCCchHHHHHHHHHHHHH
Confidence 7543322 2221112233455655544443
No 126
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=75.51 E-value=6.4 Score=40.35 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=41.6
Q ss_pred CCCCeeeEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecC
Q 008747 152 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 201 (555)
Q Consensus 152 ~~~~~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N 201 (555)
...++.++|+..+.++.|.+..++++|.|+.+ ..+.|+||.++.|.++.
T Consensus 21 ~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~-~~~~f~aGQy~~l~~~~ 69 (307)
T PLN03116 21 PKAPYTATIVSVERIVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPG 69 (307)
T ss_pred CCCCEEEEEEeeEEcccCCCCCceEEEEEecC-CCCceecCceEeeeCCC
Confidence 45677899999999998887788999999975 56899999999998763
No 127
>PRK09739 hypothetical protein; Provisional
Probab=74.32 E-value=25 Score=33.34 Aligned_cols=101 Identities=10% Similarity=-0.032 Sum_probs=61.1
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcC---CCCCCCCceEEEEeecCCCchHH-----HH-HHHHHH-HHHHHcCC
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKE---GGEWLQKLKYGVFGLGNRQYEHF-----NK-IAKVVD-EILANQGA 70 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~---~~~~l~~~~~avfGlGds~y~~f-----~~-~~~~~~-~~l~~lGa 70 (555)
+.|||+++-| ++.+|.-.+.|.+.+..... ....|.+++.+++......|..| .. +...+. ..+.-+|.
T Consensus 81 D~iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 159 (199)
T PRK09739 81 DALVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGI 159 (199)
T ss_pred CEEEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCc
Confidence 4689999999 78899999999998764321 12347788888876644344333 22 223344 44555687
Q ss_pred ccccccccccCC-----CCchhhHHHHHHHHHHHHHh
Q 008747 71 KRLVPVGLGDDD-----QCIEDDFSAWRELVWPELDN 102 (555)
Q Consensus 71 ~~i~~~~~~d~~-----~~~~~~~~~W~~~l~~~l~~ 102 (555)
+.+-....+... ...++..+.|++++.....+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~ 196 (199)
T PRK09739 160 EDSDVTFLYNTLVFDGEELHASHYQSLLSQAREMVDA 196 (199)
T ss_pred cccceEEEecccccccccCCHHHHHHHHHHHHHHHHH
Confidence 654222222211 34566788998887665543
No 128
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=72.16 E-value=8.7 Score=38.87 Aligned_cols=48 Identities=23% Similarity=0.422 Sum_probs=40.1
Q ss_pred CCCCeeeEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeec
Q 008747 152 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCE 200 (555)
Q Consensus 152 ~~~~~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~ 200 (555)
...++.+.|+..+.++.+....+++++.|+. +..+.|+||.++.|.++
T Consensus 5 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~pGQ~v~l~~~ 52 (286)
T cd06208 5 PKNPLIGKVVSNTRLTGPDAPGEVCHIVIDH-GGKLPYLEGQSIGIIPP 52 (286)
T ss_pred CCCCeEEEEEeceeccCCCCCcceEEEEEeC-CCcccccCCceEEEECC
Confidence 3456788999999999777667899999997 45789999999999865
No 129
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=71.91 E-value=12 Score=34.23 Aligned_cols=81 Identities=10% Similarity=0.131 Sum_probs=43.9
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEee-cCCCchHHHHHHHHHHHHHHHcCCccccccccc
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 79 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~ 79 (555)
+.|++.++.| .|.+|.-...|.+ +. .++|++++.|-. |.+... ...+.+.+.+ +...+.+....
T Consensus 75 D~I~lG~PvW-~~~~~~pv~tFL~---~~-----~~~gK~v~~F~T~ggs~~~---~~~~~l~~~~---~~a~i~~g~~~ 139 (156)
T PF12682_consen 75 DTIFLGTPVW-WGTPPPPVRTFLE---QY-----DFSGKTVIPFCTSGGSGFG---NSLEDLKKLC---PGATILEGLAI 139 (156)
T ss_dssp SEEEEEEEEE-TTEE-CHHHHHHH---CT-----TTTTSEEEEEEE-SS--CH---HHHHHHHHH----TTSEE---EE-
T ss_pred CEEEEechHH-cCCCCHHHHHHHH---hc-----CCCCCcEEEEEeeCCCChh---HHHHHHHHHC---CCCEeecCeEE
Confidence 3689999999 7888887776654 32 388999999955 444443 2233333332 23334442222
Q ss_pred cCCCCchhhHHHHHHHH
Q 008747 80 DDDQCIEDDFSAWRELV 96 (555)
Q Consensus 80 d~~~~~~~~~~~W~~~l 96 (555)
..+.-.++++..|+++|
T Consensus 140 ~~~~~~~~~i~~Wl~~i 156 (156)
T PF12682_consen 140 NRGSVSEEEIKEWLKKI 156 (156)
T ss_dssp --S---HHHHHHHHHHT
T ss_pred eCCCcCHHHHHHHHHhC
Confidence 22222677899999864
No 130
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=70.25 E-value=30 Score=32.67 Aligned_cols=99 Identities=15% Similarity=0.042 Sum_probs=67.9
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcC----------CCCCCCCceEEEEe-ecCCCc--h-------HHHHHHHH
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKE----------GGEWLQKLKYGVFG-LGNRQY--E-------HFNKIAKV 60 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~----------~~~~l~~~~~avfG-lGds~y--~-------~f~~~~~~ 60 (555)
+.|||+++.| .+..|.-.+.|.+.+-.... ....|.++++.++- .|...| . .+......
T Consensus 80 D~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~ 158 (199)
T PF02525_consen 80 DHIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPY 158 (199)
T ss_dssp SEEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHH
T ss_pred CcceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHH
Confidence 4689999999 78899999999999854322 12468888887775 555532 2 45666677
Q ss_pred HHHHHHHcCCccccccccccCCC-CchhhHHHHHHHHHHHH
Q 008747 61 VDEILANQGAKRLVPVGLGDDDQ-CIEDDFSAWRELVWPEL 100 (555)
Q Consensus 61 ~~~~l~~lGa~~i~~~~~~d~~~-~~~~~~~~W~~~l~~~l 100 (555)
+...+.-+|.+.+-....+.... ..++..++|++++-+.|
T Consensus 159 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 159 LRGILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence 88899999999875554433322 22677888888765543
No 131
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=68.86 E-value=1.6 Score=37.16 Aligned_cols=60 Identities=23% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHhhCCC--CCCChHHHHHHhcCCC-----cccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccC
Q 008747 305 LLEVMSEFPS--AKPPLGVFFAAIVPRL-----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL 377 (555)
Q Consensus 305 ~~dvl~~f~s--~~~p~~~ll~~~~p~~-----~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~ 377 (555)
+++|....|. .+.-+||++-+.+|.+ +.++|||+|+|. .+.+.+.|+.. |..|..|.+..
T Consensus 16 ~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~~-----------g~~T~~L~~~~ 82 (105)
T PF08022_consen 16 VVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKAR-----------GGWTKRLYEHL 82 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEeC-----------CCchHHHHHHH
Confidence 3444333333 3455788765555654 567999999997 57777766532 66677777654
No 132
>PRK01355 azoreductase; Reviewed
Probab=67.61 E-value=41 Score=31.96 Aligned_cols=101 Identities=10% Similarity=0.023 Sum_probs=62.3
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcC-----------CCCCCCCceEEEEeecCCC--chHHHHHHHHHHHHHHH
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKE-----------GGEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDEILAN 67 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~-----------~~~~l~~~~~avfGlGds~--y~~f~~~~~~~~~~l~~ 67 (555)
+.|||+++.| ++.+|.-.+.|++++..... ....+.+++..|+--.... +..|......+...+.-
T Consensus 79 D~iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~ 157 (199)
T PRK01355 79 DKVVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEF 157 (199)
T ss_pred CEEEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHh
Confidence 4689999999 78899999999999864310 1234778888776444422 22244556677888888
Q ss_pred cCCccccccccccCCC-Cch-hhHHHHHHHHHHHHHh
Q 008747 68 QGAKRLVPVGLGDDDQ-CIE-DDFSAWRELVWPELDN 102 (555)
Q Consensus 68 lGa~~i~~~~~~d~~~-~~~-~~~~~W~~~l~~~l~~ 102 (555)
+|.+.+-.......+. ..+ +....|++.-.+.+.+
T Consensus 158 ~G~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (199)
T PRK01355 158 LGAKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIE 194 (199)
T ss_pred cCCCceeEEEEecccCCccccccHHHHHHHHHHHHHH
Confidence 9998654433322222 111 2256666655554443
No 133
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=65.18 E-value=7.6 Score=41.11 Aligned_cols=73 Identities=8% Similarity=0.007 Sum_probs=57.6
Q ss_pred EEEEeccCCCCccCccHHHHHHHHHhhcC---CCCCCCCceEEEEeecCCCc--hHHHHHHHHHHHHHHHcCCccccc
Q 008747 3 IYVIGCRYGDGEPTDNAARFYKWFTEQKE---GGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVP 75 (555)
Q Consensus 3 ~i~~~sT~g~G~~p~n~~~f~~~l~~~~~---~~~~l~~~~~avfGlGds~y--~~f~~~~~~~~~~l~~lGa~~i~~ 75 (555)
+++.+-|.--|.+.+-.++||+||.+.-. .+....-.|++++|.||+.= ..||.+++-+-.+++-+||+-+-+
T Consensus 410 vda~Tktslk~idrPlfkdFwEr~~d~l~~lk~K~qrtvyRlTlVkg~n~dd~~Ayfnlv~rglp~fieVkGvty~ge 487 (601)
T KOG1160|consen 410 VDASTKTSLKKIDRPLFKDFWERFLDSLKALKKKQQRTVYRLTLVKGWNSDDLPAYFNLVSRGLPDFIEVKGVTYCGE 487 (601)
T ss_pred EeecchhhhcCCCCchHHHHHHHHHHHHHHHHHhhcceEEEEEEeccccccccHHHHHHHhccCCceEEEeceeEecc
Confidence 45666677677888889999999886432 22335567999999999985 589999999999999999987644
No 134
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=51.39 E-value=44 Score=30.79 Aligned_cols=55 Identities=25% Similarity=0.313 Sum_probs=34.8
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCC-Cc-hHHHHHHHHHHHHHHH
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNR-QY-EHFNKIAKVVDEILAN 67 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds-~y-~~f~~~~~~~~~~l~~ 67 (555)
.|++...++ .|.++..+++|.+.| .++++++||--=. .. +++..+.+++.+.+.+
T Consensus 42 ~i~lG~w~d-~G~~d~~~~~fl~~l----------~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 42 LIFLGFWID-KGTPDKDMKEFLKKL----------KGKKVALFGTAGAGPDSEYAKKILKNVEALLPK 98 (160)
T ss_pred EEEEEcCcc-CCCCCHHHHHHHHHc----------cCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc
Confidence 355555566 699999999986664 4677888875321 11 3566665555555544
No 135
>PRK13555 azoreductase; Provisional
Probab=50.79 E-value=1.6e+02 Score=28.31 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=52.0
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhc--------CCCCCCCCceEEEEeecCCCch-----HHHHHHHHHHHHHHH
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQK--------EGGEWLQKLKYGVFGLGNRQYE-----HFNKIAKVVDEILAN 67 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~--------~~~~~l~~~~~avfGlGds~y~-----~f~~~~~~~~~~l~~ 67 (555)
+.+||+++-| ++.+|.-.+.|.+++-... .....|.+++..|++.-...|. ........+...|.-
T Consensus 91 D~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~~~yl~~il~~ 169 (208)
T PRK13555 91 DKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMAVNYVTTVLGF 169 (208)
T ss_pred CEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhHHHHHHHHHHh
Confidence 4689999999 7889999999999988642 1224588999999977333452 233344667778888
Q ss_pred cCCccc
Q 008747 68 QGAKRL 73 (555)
Q Consensus 68 lGa~~i 73 (555)
+|.+.+
T Consensus 170 ~Gi~~v 175 (208)
T PRK13555 170 WGITNP 175 (208)
T ss_pred cCCCce
Confidence 898754
No 136
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=49.42 E-value=15 Score=33.92 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=41.0
Q ss_pred CCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHH
Q 008747 36 LQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 92 (555)
Q Consensus 36 l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W 92 (555)
+...+++|+=.||+....++..+..+..+|++.|++...-....|+.....+.++.|
T Consensus 2 ~~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~ 58 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAW 58 (163)
T ss_pred CCccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHH
Confidence 456899999999998877888899999999999987543333334433444445444
No 137
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=47.12 E-value=52 Score=26.94 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=28.6
Q ss_pred eEEEeeeecCCCCCCCcEEEEEEEecC--CCccccCCCeEEEeec
Q 008747 158 SNVAVRKELHTPSSDRSCTHLEFDIAG--TGLTYETGDHVGVYCE 200 (555)
Q Consensus 158 ~~v~~~~~l~~~~~~~~~~~i~~~~~~--~~~~y~~GD~i~i~p~ 200 (555)
++|+..++++. ++++++|.+++ ....|+||.++.|.-+
T Consensus 2 ~~v~~~~~~s~-----~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 2 AKVVEIEELSP-----DVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEEESS-----SEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEEeCC-----CeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 56788888874 68889998874 2478999999999877
No 138
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=45.09 E-value=81 Score=30.70 Aligned_cols=69 Identities=7% Similarity=-0.036 Sum_probs=49.5
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 73 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i 73 (555)
-+||+++-| +|..|.--+.+.+|+.........+.++-++|+|..-... . -.+...+...|..+|+..+
T Consensus 93 gvii~TPEY-n~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~-g-~ra~~~LR~vl~~l~a~v~ 161 (219)
T TIGR02690 93 GQVWCSPER-HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQ-S-FNAVNILRRLGRWMRMPTI 161 (219)
T ss_pred EEEEeCCcc-ccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHh-H-HHHHHHHHHHHHHCCCccc
Confidence 489999999 7899999999999997642112358899999987542211 1 1245667888888998543
No 139
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=44.46 E-value=13 Score=32.38 Aligned_cols=53 Identities=15% Similarity=0.321 Sum_probs=25.8
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCeeccccchhhhccCCCCcCCCCceeeEEEecCCC
Q 008747 330 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF 397 (555)
Q Consensus 330 ~~pR~YSIaSsp~~~~~~i~i~v~~v~~~~~~g~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~~~F 397 (555)
...|.|||.+... ..+++.|-|.++ . ..|.+|.|..+..+|+. +-+..+.|.|
T Consensus 65 p~~R~YTvR~~d~-~~~~l~iDfv~H-g-------~~Gpas~WA~~A~pGd~------v~v~gP~g~~ 117 (117)
T PF08021_consen 65 PVMRTYTVRRFDP-ETGELDIDFVLH-G-------DEGPASRWARSARPGDR------VGVTGPRGSF 117 (117)
T ss_dssp -EEEEEE--EEET-T--EEEEEEE---S-------S--HHHHHHHH--TT-E------EEEEEEE---
T ss_pred CCCCCcCEeeEcC-CCCEEEEEEEEC-C-------CCCchHHHHhhCCCCCE------EEEeCCCCCC
Confidence 4569999988643 235566544332 0 12889999999988754 5566677766
No 140
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=43.41 E-value=2.9e+02 Score=26.06 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=63.2
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcC----CCCCCCCceEEEEe-ecCCC--ch--HHHH-----HHHHHHHHHH
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKE----GGEWLQKLKYGVFG-LGNRQ--YE--HFNK-----IAKVVDEILA 66 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~----~~~~l~~~~~avfG-lGds~--y~--~f~~-----~~~~~~~~l~ 66 (555)
+.|||..+.| ...+|.-.+.|.+..-.... ....|.|+++.|.- .|... |. -|+. .-.-++..+.
T Consensus 63 D~iV~~fPl~-w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~ 141 (184)
T PRK04930 63 DVIVFQHPLY-TYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAA 141 (184)
T ss_pred CEEEEEcCcc-ccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHH
Confidence 4699999999 66688888988887765421 12358899888864 45532 42 2221 2222344445
Q ss_pred HcCCccccccccccCCCCchhhHHHHHHHHHHHHHhh
Q 008747 67 NQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 103 (555)
Q Consensus 67 ~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~ 103 (555)
-+|.+.+-+....+.....+++...|.+...+.|...
T Consensus 142 ~~Gm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (184)
T PRK04930 142 MCRMHWLSPIIIYWARRQSPEELASHARAYGDWLANP 178 (184)
T ss_pred HcCCeEcCcEEEecCCCCCHHHHHHHHHHHHHHHhhh
Confidence 6688776555554444455667777777766666543
No 141
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=41.20 E-value=51 Score=32.39 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=27.9
Q ss_pred cCCCCCC-CcEEEEEEEecCCCccccCCCeEEEeecC
Q 008747 166 LHTPSSD-RSCTHLEFDIAGTGLTYETGDHVGVYCEN 201 (555)
Q Consensus 166 l~~~~~~-~~~~~i~~~~~~~~~~y~~GD~i~i~p~N 201 (555)
++.+++. .++++|+|+.++....|+||.++.|.+++
T Consensus 8 ~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 8 LLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred ecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 4445543 38999999876567899999999998765
No 142
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=40.46 E-value=63 Score=30.87 Aligned_cols=69 Identities=12% Similarity=-0.055 Sum_probs=46.8
Q ss_pred eEEEEeccCCCCccCccHHHHHHH-HHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCcc
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKW-FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKR 72 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~-l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~ 72 (555)
-|||.++|| .|..+..++.|++. +.-.. ....|.++..++|..+-+.--.-......+...+...|...
T Consensus 78 ~iI~gsPvy-~g~vsa~~K~fiDR~~~~~~-~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~ 147 (207)
T COG0655 78 GIIFGSPVY-FGNVSAQMKAFIDRSTGPLW-APGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIV 147 (207)
T ss_pred EEEEeCCee-cCCchHHHHHHHhhcchhhc-ccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeE
Confidence 589999999 89999999999999 44332 22457788778887666543222234455566666666543
No 143
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=37.45 E-value=71 Score=24.44 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.3
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCEEE
Q 008747 528 EQGSLDSSKAESMVKNLQMTGRYLR 552 (555)
Q Consensus 528 ~~~~~~~~~a~~~~~~l~~~~Ry~~ 552 (555)
+.-+++..+|..||..|+++|+...
T Consensus 23 ~~~gls~~~aR~yL~~Le~eG~V~~ 47 (62)
T PF04703_consen 23 DALGLSIYQARYYLEKLEKEGKVER 47 (62)
T ss_dssp HHHTS-HHHHHHHHHHHHHCTSEEE
T ss_pred HHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 3347899999999999999998764
No 144
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=33.42 E-value=30 Score=30.56 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=35.6
Q ss_pred eEEEEeecCCCc--hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHH
Q 008747 40 KYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 92 (555)
Q Consensus 40 ~~avfGlGds~y--~~f~~~~~~~~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W 92 (555)
+++|+-.||.-+ .-++..+..+.++|++.|.+........|+.....+.++.|
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~ 55 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEA 55 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHH
Confidence 578999999765 45777888999999999987544333334433344444444
No 145
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=33.31 E-value=33 Score=29.11 Aligned_cols=38 Identities=16% Similarity=0.283 Sum_probs=27.8
Q ss_pred cchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Q 008747 512 KSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGR 549 (555)
Q Consensus 512 ~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R 549 (555)
..|...=.+-|.+=+.+.|.++.++|.+|+..|.++.+
T Consensus 19 ~a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k 56 (108)
T COG3937 19 AAETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAK 56 (108)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 34444444445555678899999999999999988765
No 146
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=32.89 E-value=90 Score=30.09 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=30.5
Q ss_pred eeEEEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeEEEeecC
Q 008747 157 RSNVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 201 (555)
Q Consensus 157 ~~~v~~~~~l~~~~~~~~~~~i~~~~~~-~~~~y~~GD~i~i~p~N 201 (555)
.++|+..+.++. +++++.|+.+. ..+.|+||.++.|..++
T Consensus 2 ~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 2 VGTVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred ceEEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 467788887764 57888888754 35789999999998654
No 147
>PRK06934 flavodoxin; Provisional
Probab=31.92 E-value=2e+02 Score=28.04 Aligned_cols=81 Identities=9% Similarity=0.060 Sum_probs=46.5
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEee-cCCCch-HHHHHHHHHHHHHHHcCCcccccccc
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYE-HFNKIAKVVDEILANQGAKRLVPVGL 78 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~-~f~~~~~~~~~~l~~lGa~~i~~~~~ 78 (555)
+.|+++.+.| .|.+|.=.+.|.+.. .++|++++.|.. |-+... .+. .+.+... +|+.+.+-..
T Consensus 131 D~I~IG~PIW-wg~~P~~V~tFLe~~--------d~~GK~I~pF~T~ggsg~g~s~~----~i~~l~~--~a~~v~~Gl~ 195 (221)
T PRK06934 131 DQIFIGYPIW-WYKMPMVMYSFFEQH--------DFSGKTLIPFTTHGGSRFSDSLR----EIKRLQP--NAQLVTQGLA 195 (221)
T ss_pred CEEEEEcchh-hccccHHHHHHHHhc--------CCCCCEEEEEEecCCCCccchHH----HHHHHcC--Ccceecccee
Confidence 3589999999 688888777775333 388999999965 334442 222 2222211 3323333221
Q ss_pred --ccCC--CCchhhHHHHHHHH
Q 008747 79 --GDDD--QCIEDDFSAWRELV 96 (555)
Q Consensus 79 --~d~~--~~~~~~~~~W~~~l 96 (555)
+++. ...++.+..|++++
T Consensus 196 i~~~~~~~~~~~~~I~~Wl~~l 217 (221)
T PRK06934 196 ISRNDVTDDDTPKEIINWLNTL 217 (221)
T ss_pred eecCcccccchHHHHHHHHHHc
Confidence 2221 13467899998764
No 148
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=31.69 E-value=1.4e+02 Score=31.56 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=46.6
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEee-cCCCchHHHHHHHHHHHHHHHcCCccccc
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVP 75 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~~~~~l~~lGa~~i~~ 75 (555)
-+++.+||++ ++++..++.+.-.+.... ..++..+|||. |.+. .+.+.+.++|+.+|-+-..+
T Consensus 300 ~~vvGsPT~~-~~~~p~i~~~l~~v~~~~-----~~~k~~~vfgS~GW~g-----~av~~i~~~l~~~g~~~~~~ 363 (388)
T COG0426 300 GLVVGSPTIN-GGAHPPIQTALGYVLALA-----PKNKLAGVFGSYGWSG-----EAVDLIEEKLKDLGFEFGFD 363 (388)
T ss_pred eEEEecCccc-CCCCchHHHHHHHHHhcc-----CcCceEEEEeccCCCC-----cchHHHHHHHHhcCcEEecc
Confidence 4789999996 455556888888887664 45677888885 3343 36899999999999876655
No 149
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=31.50 E-value=94 Score=29.89 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=30.3
Q ss_pred eeEEEeeeecCCCCCCCcEEEEEEEecCCC-ccccCCCeEEEeecC
Q 008747 157 RSNVAVRKELHTPSSDRSCTHLEFDIAGTG-LTYETGDHVGVYCEN 201 (555)
Q Consensus 157 ~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~-~~y~~GD~i~i~p~N 201 (555)
.++|+.++.++. +++.+.|+.++.. ..|+||.++.|..++
T Consensus 3 ~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (235)
T cd06217 3 VLRVTEIIQETP-----TVKTFRLAVPDGVPPPFLAGQHVDLRLTA 43 (235)
T ss_pred eEEEEEEEecCC-----CeEEEEEECCCCCcCCcCCcCeEEEEEec
Confidence 467777777764 6788888876432 789999999998753
No 150
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=30.52 E-value=1.8e+02 Score=25.88 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=43.1
Q ss_pred CCceEEEEeecCC------------------------CchHHHHHHHHHHHHHHHcCCccccccccccCCC---CchhhH
Q 008747 37 QKLKYGVFGLGNR------------------------QYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ---CIEDDF 89 (555)
Q Consensus 37 ~~~~~avfGlGds------------------------~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~d~~~---~~~~~~ 89 (555)
....||.+.+|+- .-+.|-.+++.+...|.++| +|.+.|+-.. ..-...
T Consensus 46 pp~~~a~lalGS~GR~E~~~~sDqD~alv~~d~~~~~~~~~f~~~a~~~~~~L~~~G----~~~C~g~vmasnp~W~~s~ 121 (138)
T PF03445_consen 46 PPVPFAWLALGSYGRREQTLYSDQDNALVFEDEESEEDRAYFEAFAERLVDALDECG----FPPCPGGVMASNPRWRGSL 121 (138)
T ss_pred CCCCEEEEEECcccccCCCcCccccceeeecCccchhHHHHHHHHHHHHHHHHHHcC----CCCCCCCcCccChhhCcCH
Confidence 3678999988874 11379999999999999999 5666666522 234467
Q ss_pred HHHHHHHHHHHH
Q 008747 90 SAWRELVWPELD 101 (555)
Q Consensus 90 ~~W~~~l~~~l~ 101 (555)
..|.+.+-..+.
T Consensus 122 ~~W~~~~~~w~~ 133 (138)
T PF03445_consen 122 SEWREQLRRWID 133 (138)
T ss_pred HHHHHHHHHHHh
Confidence 788776655443
No 151
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=30.33 E-value=72 Score=30.41 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=27.5
Q ss_pred CCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008747 33 GEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 73 (555)
Q Consensus 33 ~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i 73 (555)
...+++++++|.|+|. +++.+-++|.+.|++-+
T Consensus 23 ~~~l~gk~v~I~G~G~--------vG~~~A~~L~~~G~~Vv 55 (200)
T cd01075 23 TDSLEGKTVAVQGLGK--------VGYKLAEHLLEEGAKLI 55 (200)
T ss_pred CCCCCCCEEEEECCCH--------HHHHHHHHHHHCCCEEE
Confidence 3468999999999994 67888999999998644
No 152
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=27.85 E-value=46 Score=26.20 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=14.9
Q ss_pred cccCCCeEEEeecCCH
Q 008747 188 TYETGDHVGVYCENLS 203 (555)
Q Consensus 188 ~y~~GD~i~i~p~N~~ 203 (555)
.|++||.+.|..+|+-
T Consensus 5 ~~~~GD~VyViYrNPH 20 (75)
T PF11132_consen 5 PYHAGDIVYVIYRNPH 20 (75)
T ss_pred ccCCCCEEEEEEcCCC
Confidence 6999999999999986
No 153
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=27.52 E-value=80 Score=29.31 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=17.9
Q ss_pred hhhccHHHHHHHHhCCCEEEEecCC
Q 008747 487 KMMEKSSDIWNMLSEGAYLYVCGDA 511 (555)
Q Consensus 487 ~l~~~~~~v~~~l~~~~~iyvCG~~ 511 (555)
.+......+.+.+..+..|.+||+.
T Consensus 26 ~I~~aa~~i~~~l~~G~Kvl~cGNG 50 (176)
T COG0279 26 AIERAAQLLVQSLLNGNKVLACGNG 50 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCC
Confidence 3444455666666789999999994
No 154
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=27.17 E-value=1.3e+02 Score=25.25 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=39.3
Q ss_pred CCceEEEEeecCC---CchHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHH
Q 008747 37 QKLKYGVFGLGNR---QYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFS 90 (555)
Q Consensus 37 ~~~~~avfGlGds---~y~~f~~~~~~~~~~l~~lGa~~i~~~~~~d~~~~~~~~~~ 90 (555)
+|++|-+=.+|-. .|+.-..+.+++++.+.+.|+.|++=..+.|...+.+..++
T Consensus 31 sGl~y~~~pm~T~IEGe~dev~~~i~~~~e~~~~~G~~Rv~t~ikid~R~dk~~~~~ 87 (97)
T TIGR00106 31 SGLKYELHPMGTLIEGDLDELFEAIKAIHEAVLEKGSDRVYTSIKIDTRTDKHRTLR 87 (97)
T ss_pred cCCCeEecCCccEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecCCCCCCHH
Confidence 3555555555442 38888889999999999999999988888887544333333
No 155
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=26.88 E-value=1.4e+02 Score=29.34 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=31.7
Q ss_pred eeeEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCC
Q 008747 156 CRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENL 202 (555)
Q Consensus 156 ~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~ 202 (555)
..++|+..++++. +++.|.|+.+ ....|+||.++.|..++.
T Consensus 5 ~~~~V~~~~~~t~-----d~~~l~l~~~-~~~~~~pGQ~v~l~~~~~ 45 (250)
T PRK00054 5 ENMKIVENKEIAP-----NIYTLVLDGE-KVFDMKPGQFVMVWVPGV 45 (250)
T ss_pred eEEEEEEEEEecC-----CeEEEEEeCc-cccCCCCCcEEEEEeCCC
Confidence 3567888888874 6788888843 567899999999987654
No 156
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=26.71 E-value=59 Score=29.49 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=37.0
Q ss_pred ceEEEEeecCCCch--HHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHH
Q 008747 39 LKYGVFGLGNRQYE--HFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 92 (555)
Q Consensus 39 ~~~avfGlGds~y~--~f~~~~~~~~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W 92 (555)
++++|+=.||..+. -++..+..+.++|++.|++........|+.+...+.+..|
T Consensus 1 ~~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~ 56 (152)
T cd00886 1 LRAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEW 56 (152)
T ss_pred CEEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHH
Confidence 47899999997773 6777788899999999987554433444433344444443
No 157
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=25.69 E-value=72 Score=29.64 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=27.6
Q ss_pred CCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008747 32 GGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 73 (555)
Q Consensus 32 ~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i 73 (555)
....+.+.+++|+|+|+ .++.+.++|+.+|++-+
T Consensus 30 ~~~~l~g~tvgIiG~G~--------IG~~vA~~l~~fG~~V~ 63 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGR--------IGRAVARRLKAFGMRVI 63 (178)
T ss_dssp TBS-STTSEEEEESTSH--------HHHHHHHHHHHTT-EEE
T ss_pred CccccCCCEEEEEEEcC--------CcCeEeeeeecCCceeE
Confidence 34468999999999996 79999999999999544
No 158
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=25.50 E-value=4.7e+02 Score=24.42 Aligned_cols=100 Identities=12% Similarity=0.009 Sum_probs=58.7
Q ss_pred CeEEEEeccCCCCccCccHHHHHHHHHhhcC----CCCCCCCceE-EEEeecCC--Cch-----HHHHHHHHHHHHHHHc
Q 008747 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEQKE----GGEWLQKLKY-GVFGLGNR--QYE-----HFNKIAKVVDEILANQ 68 (555)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~----~~~~l~~~~~-avfGlGds--~y~-----~f~~~~~~~~~~l~~l 68 (555)
+.|||..+-| ...+|.-.+.+.+..-.... ....|.|+++ .++-.|.. .|. .|...-.-+...+.-+
T Consensus 57 D~iV~~fP~~-w~~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~ 135 (176)
T PRK00871 57 DLIVWQHPMQ-WYSIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYC 135 (176)
T ss_pred CEEEEEcChh-hccccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHc
Confidence 4689999999 67788888888877664321 2234888876 45556665 342 2334444556666778
Q ss_pred CCccccccccccCCCCchhhHHHHHHHHHHHHH
Q 008747 69 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 101 (555)
Q Consensus 69 Ga~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~ 101 (555)
|.+.+-+..........+++++...+...+.|.
T Consensus 136 G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 168 (176)
T PRK00871 136 GLNWLPPFAMHCTFICDDETLEGQARHYKQRLL 168 (176)
T ss_pred CCeEcceEEEeeeccCCHHHHHHHHHHHHHHHH
Confidence 988665544322222234445544444444443
No 159
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=25.40 E-value=1.5e+02 Score=28.61 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=32.0
Q ss_pred CeeeEEEeeeecCCCCCCCcEEEEEEEecCCC-ccccCCCeEEEeecC
Q 008747 155 PCRSNVAVRKELHTPSSDRSCTHLEFDIAGTG-LTYETGDHVGVYCEN 201 (555)
Q Consensus 155 ~~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~-~~y~~GD~i~i~p~N 201 (555)
++.++|+..+.+++ +++.+.|+.++.. ..|+||.++.|..++
T Consensus 6 ~~~~~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 48 (238)
T cd06211 6 DFEGTVVEIEDLTP-----TIKGVRLKLDEPEEIEFQAGQYVNLQAPG 48 (238)
T ss_pred EEeEEEEEEEecCC-----CEEEEEEEcCCCCcCccCCCCeEEEEcCC
Confidence 34678888888874 5788888876432 589999999998654
No 160
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=25.12 E-value=1.3e+02 Score=28.56 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=30.1
Q ss_pred eeEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCC
Q 008747 157 RSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENL 202 (555)
Q Consensus 157 ~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N~ 202 (555)
+++|+..+.++. +++++.|+.++ .+.|+||.++.|.-+++
T Consensus 2 ~~~v~~~~~~~~-----~~~~~~l~~~~-~~~~~pGQ~v~l~~~~~ 41 (218)
T cd06196 2 TVTLLSIEPVTH-----DVKRLRFDKPE-GYDFTPGQATEVAIDKP 41 (218)
T ss_pred ceEEEEEEEcCC-----CeEEEEEcCCC-cCCCCCCCEEEEEeeCC
Confidence 356777777764 67888888654 57999999999986543
No 161
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=25.04 E-value=1.5e+02 Score=31.45 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=28.4
Q ss_pred CCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008747 34 EWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 73 (555)
Q Consensus 34 ~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i 73 (555)
..|.+++++|+|+|+ .++.+.++|+.+|.+-+
T Consensus 112 ~~L~gktvGIIG~G~--------IG~~vA~~l~a~G~~V~ 143 (378)
T PRK15438 112 FSLHDRTVGIVGVGN--------VGRRLQARLEALGIKTL 143 (378)
T ss_pred CCcCCCEEEEECcCH--------HHHHHHHHHHHCCCEEE
Confidence 458999999999996 79999999999998654
No 162
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=24.97 E-value=1.6e+02 Score=28.17 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=30.9
Q ss_pred eeEEEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeEEEeecC
Q 008747 157 RSNVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 201 (555)
Q Consensus 157 ~~~v~~~~~l~~~~~~~~~~~i~~~~~~-~~~~y~~GD~i~i~p~N 201 (555)
.++|+..+.++. +++.|.|+.++ ....|+||.++.|..+.
T Consensus 3 ~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (228)
T cd06209 3 EATVTEVERLSD-----STIGLTLELDEAGALAFLPGQYVNLQVPG 43 (228)
T ss_pred eEEEEEEEEcCC-----CeEEEEEEcCCCCcCccCCCCEEEEEeCC
Confidence 567777777764 58888888765 35789999999998654
No 163
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=24.89 E-value=46 Score=29.89 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=36.3
Q ss_pred eEEEEeecCCCc---------hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHH
Q 008747 40 KYGVFGLGNRQY---------EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 92 (555)
Q Consensus 40 ~~avfGlGds~y---------~~f~~~~~~~~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W 92 (555)
+++|+-.||.-+ .-++..+..+.++|+++|++-..-....|+.+...+.+..|
T Consensus 2 rv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~ 63 (144)
T TIGR00177 2 RVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKA 63 (144)
T ss_pred EEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHH
Confidence 688999999655 24677788999999999987554333445544445555554
No 164
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=24.71 E-value=70 Score=31.03 Aligned_cols=32 Identities=38% Similarity=0.501 Sum_probs=26.1
Q ss_pred CCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008747 34 EWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 73 (555)
Q Consensus 34 ~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i 73 (555)
..+.+++++|.|+|+ +++.+-+.|.++|++.+
T Consensus 19 ~~l~g~~vaIqGfGn--------VG~~~a~~L~~~G~~vV 50 (217)
T cd05211 19 DSLEGLTVAVQGLGN--------VGWGLAKKLAEEGGKVL 50 (217)
T ss_pred CCcCCCEEEEECCCH--------HHHHHHHHHHHcCCEEE
Confidence 358999999999997 56677778888898665
No 165
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=24.25 E-value=2.1e+02 Score=27.83 Aligned_cols=42 Identities=14% Similarity=0.016 Sum_probs=31.3
Q ss_pred eeeEEEeeeecCCCCCCCcEEEEEEEecCC-C-ccccCCCeEEEeecCC
Q 008747 156 CRSNVAVRKELHTPSSDRSCTHLEFDIAGT-G-LTYETGDHVGVYCENL 202 (555)
Q Consensus 156 ~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~-~-~~y~~GD~i~i~p~N~ 202 (555)
..++|+....++. ++++|+|+.++. . ..|+||+++.|..+++
T Consensus 7 ~~~~v~~~~~~s~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~ 50 (247)
T cd06184 7 RPFVVARKVAESE-----DITSFYLEPADGGPLPPFLPGQYLSVRVKLP 50 (247)
T ss_pred EEEEEEEEEEcCC-----CeEEEEEEeCCCCcCCCCCCCCEEEEEEecC
Confidence 3567777777763 588898887643 2 6899999999996654
No 166
>KOG4723 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.69 E-value=95 Score=29.75 Aligned_cols=114 Identities=12% Similarity=0.130 Sum_probs=63.6
Q ss_pred CCCeEEEEeccCCCCCCCcHHHHHHHHHcCCcceEEEEEccCCCCcccccchhhccHHHHHHHHhCCCEEEEecCCcchH
Q 008747 436 LGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMA 515 (555)
Q Consensus 436 ~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG~~~~M~ 515 (555)
.++++|+-+||.....|++.--|..+.+.+.- ..++||+|.=.+...+-.++.-+ +.-.-+++.-||+=|= .|.
T Consensus 18 qgkltLl~d~~eT~gsFl~H~~l~~~Lkan~~-~cFlaf~k~fshy~i~~rKlG~~---l~t~k~rgqlvF~dgl--~~~ 91 (248)
T KOG4723|consen 18 QGKLTLLLDTRETPGSFLFHYYLYHALKANES-TCFLAFSKTFSHYAISMRKLGMD---LKTKKNRGQLVFIDGL--SML 91 (248)
T ss_pred CccEEEEeecccCCceeeHHHHHHHHHhcCCc-EEEEEeecchhHHHHHHHHhCCc---eeecccCCcEEEEhhh--hhh
Confidence 48999999998766689999999888877644 58899998632111111111000 0000024557777663 121
Q ss_pred HH--HHHHHH------HHHHHcCCCCHHHHHHHHHHHHHCCCEEEeeC
Q 008747 516 RD--VHRTLH------TIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 555 (555)
Q Consensus 516 ~~--v~~~L~------~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 555 (555)
-+ +.+.-+ ..+..-++-.-.-.+++..+.++.-+..+|+|
T Consensus 92 ~~~i~~q~~kq~~~t~~~~~a~~~~ni~~v~e~~rE~~~~v~~~e~i~ 139 (248)
T KOG4723|consen 92 FAPISKQSKKQAPETKNHIKAVFAPNIQCVEENDREFENSVIIIEDID 139 (248)
T ss_pred hCccchhhhhcCchhHHHHHhhcCcchhHHHHHHHHHhhheeeeeeee
Confidence 11 111111 11111112123345678888888889999988
No 167
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=23.30 E-value=1.7e+02 Score=28.08 Aligned_cols=39 Identities=13% Similarity=0.317 Sum_probs=30.0
Q ss_pred eeEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecC
Q 008747 157 RSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 201 (555)
Q Consensus 157 ~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N 201 (555)
+++|+..+.++. +++.|.|..+ ....|+||.++.|..+.
T Consensus 2 ~~~v~~~~~~t~-----~~~~~~l~~~-~~~~~~pGQ~~~l~~~~ 40 (227)
T cd06213 2 RGTIVAQERLTH-----DIVRLTVQLD-RPIAYKAGQYAELTLPG 40 (227)
T ss_pred eEEEEEEeecCC-----CEEEEEEecC-CCCCcCCCCEEEEEeCC
Confidence 467778887764 6788888754 35789999999998754
No 168
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=22.87 E-value=2.4e+02 Score=26.41 Aligned_cols=65 Identities=12% Similarity=0.208 Sum_probs=50.3
Q ss_pred eEEEEeccCCCCccCccHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008747 2 KIYVIGCRYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 73 (555)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i 73 (555)
-+||+|+-| +|..|.-.+...+||-.. .+.++..+++|-|-....... +...+...|..+|+..+
T Consensus 70 ~li~~tPeY-n~s~pg~lKnaiD~l~~~-----~~~~Kpv~~~~~s~g~~~~~~-a~~~Lr~vl~~~~~~~~ 134 (184)
T COG0431 70 GLIIATPEY-NGSYPGALKNAIDWLSRE-----ALGGKPVLLLGTSGGGAGGLR-AQNQLRPVLSFLGARVI 134 (184)
T ss_pred EEEEECCcc-CCCCCHHHHHHHHhCCHh-----HhCCCcEEEEecCCCchhHHH-HHHHHHHHHHhcCceec
Confidence 489999999 899999999999999754 478888888877766553332 45667788888888655
No 169
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=22.76 E-value=1.2e+02 Score=29.32 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=29.0
Q ss_pred eeEEEeeeecCCCCCCCcEEEEEEEecCCC---ccccCCCeEEEeec
Q 008747 157 RSNVAVRKELHTPSSDRSCTHLEFDIAGTG---LTYETGDHVGVYCE 200 (555)
Q Consensus 157 ~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~---~~y~~GD~i~i~p~ 200 (555)
.++|+..+.++. +++.+.|+.+... ..|+||.++.|.++
T Consensus 3 ~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~ 44 (241)
T cd06214 3 PLTVAEVVRETA-----DAVSITFDVPEELRDAFRYRPGQFLTLRVP 44 (241)
T ss_pred eEEEEEEEecCC-----CeEEEEEecCcccCCCCCcCCCCeEEEEee
Confidence 356777777753 5778888876432 58999999999976
No 170
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=22.12 E-value=1.4e+02 Score=30.05 Aligned_cols=42 Identities=7% Similarity=0.055 Sum_probs=34.5
Q ss_pred EEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008747 504 YLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 545 (555)
Q Consensus 504 ~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 545 (555)
..=++|++|++.-.+.++|.+.....+|++.++|.+++.++.
T Consensus 168 ~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~ 209 (277)
T PRK06928 168 ASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFAL 209 (277)
T ss_pred eeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344667767899999999999988888899999999887654
No 171
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=22.03 E-value=1.3e+02 Score=26.60 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=20.2
Q ss_pred hhccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHH
Q 008747 488 MMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 524 (555)
Q Consensus 488 l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 524 (555)
|.+-.+.+.+.+.+++.||+||. ..-.........+
T Consensus 21 i~~aa~~i~~~~~~gg~i~~~G~-G~S~~~a~~~~~~ 56 (138)
T PF13580_consen 21 IEKAADLIAEALRNGGRIFVCGN-GHSAAIASHFAAD 56 (138)
T ss_dssp HHHHHHHHHHHHHTT--EEEEES-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEcC-chhhhHHHHHHHH
Confidence 44445556666788999999998 4444333333333
No 172
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=21.96 E-value=1.3e+02 Score=27.64 Aligned_cols=49 Identities=24% Similarity=0.462 Sum_probs=34.0
Q ss_pred CEEEEecCCcchHHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCCEEE
Q 008747 503 AYLYVCGDAKSMARDVHRTLHTIVQEQG----SLDSSKAESMVKNLQMTGRYLR 552 (555)
Q Consensus 503 ~~iyvCG~~~~M~~~v~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~~Ry~~ 552 (555)
-.|.=||. ..-...|+....+.+++++ -++.|+|..-..=|-.+|||+.
T Consensus 114 lLIvG~Gd-~~~p~~v~~~V~~F~k~~ki~lEi~dte~A~aTfNfLNaEgR~Va 166 (196)
T KOG3363|consen 114 LLIVGCGD-KKHPDKVRPSVRQFVKSHKIKLEIVDTENAAATFNFLNAEGRYVA 166 (196)
T ss_pred EEEEecCC-cCCchhcCHHHHHHHHHhCcceEEecchhhhhHhhhccccccEEE
Confidence 34555887 5555555555555555543 3678889888888899999984
No 173
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=21.58 E-value=31 Score=19.28 Aligned_cols=10 Identities=50% Similarity=1.128 Sum_probs=7.2
Q ss_pred CccchhHHHH
Q 008747 414 TGLAPFRGFL 423 (555)
Q Consensus 414 TGiAPf~s~l 423 (555)
.|++|||+-.
T Consensus 6 ~gftpfrgkf 15 (19)
T PF06753_consen 6 PGFTPFRGKF 15 (19)
T ss_pred CCCCcccccc
Confidence 5888888643
No 174
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=21.48 E-value=60 Score=32.97 Aligned_cols=60 Identities=25% Similarity=0.410 Sum_probs=38.0
Q ss_pred ccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCCCCCCC--cchHHHHHhhcccccC
Q 008747 189 YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP--PCSLRTALTKYADLLS 259 (555)
Q Consensus 189 y~~GD~i~i~p~N~~~~V~~~l~~l~l~~~~~~~i~~~~~~~~~~~~~~~~~~~p--~~t~~~~l~~~~Dl~~ 259 (555)
++|||++-..+.|...--.. --.+.++++.|... -++-. ...+. |||-..+|++|+||..
T Consensus 99 fk~Gd~VIp~~a~lGtW~t~----~v~~e~~Li~vd~~----~pl~~---AAT~~VNP~TAyrmL~dfv~L~~ 160 (354)
T KOG0025|consen 99 FKPGDWVIPLSANLGTWRTE----AVFSESDLIKVDKD----IPLAS---AATLSVNPCTAYRMLKDFVQLNK 160 (354)
T ss_pred cCCCCeEeecCCCCccceee----EeecccceEEcCCc----CChhh---hheeccCchHHHHHHHHHHhcCC
Confidence 99999999999997643221 12455566655421 11110 11122 8999999999999965
No 175
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=21.42 E-value=1.6e+02 Score=28.11 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=28.0
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecC
Q 008747 159 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 201 (555)
Q Consensus 159 ~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~i~i~p~N 201 (555)
+|+..+.++. ++++|+|..++ ...|+||.++.|..++
T Consensus 2 ~v~~~~~~t~-----~~~~l~l~~~~-~~~~~pGQ~v~l~~~~ 38 (224)
T cd06189 2 KVESIEPLND-----DVYRVRLKPPA-PLDFLAGQYLDLLLDD 38 (224)
T ss_pred EEEEEEeCCC-----ceEEEEEecCC-CcccCCCCEEEEEcCC
Confidence 4555556653 68889888764 6899999999999764
No 176
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=20.42 E-value=2.3e+02 Score=22.68 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=29.5
Q ss_pred HHHHHHHhhcC-CCCCCCCceEEEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008747 21 RFYKWFTEQKE-GGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 73 (555)
Q Consensus 21 ~f~~~l~~~~~-~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~l~~lGa~~i 73 (555)
-.+++|..... ....+++.+++|+|.|. +++-+...|.+.|+.++
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~v~i~G~G~--------~g~~~a~~l~~~~~~~v 50 (86)
T cd05191 5 GAVALLKAAGKVTNKSLKGKTVVVLGAGE--------VGKGIAKLLADEGGKKV 50 (86)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEECCCH--------HHHHHHHHHHHcCCCEE
Confidence 34555554321 12348899999999994 56777778888865544
No 177
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=20.22 E-value=1.2e+02 Score=25.80 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=28.1
Q ss_pred EecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008747 507 VCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 545 (555)
Q Consensus 507 vCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 545 (555)
+||+++++.-.+.+.+.+.... .|++.++|++++.++.
T Consensus 12 lsGsgpA~~~~~~eal~~a~v~-~Gl~~~~A~~lv~~t~ 49 (107)
T PF14748_consen 12 LSGSGPAYFFLFIEALADAAVA-QGLPREEARKLVAQTF 49 (107)
T ss_dssp HCTTHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 4666667888888888888777 5799999999877643
Done!