BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008748
         (555 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
           Xyloglucan Nonasaccharide Xllg.
 pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
           Xyloglucan Nonasaccharide Xllg.
 pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
 pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
          Length = 278

 Score = 31.6 bits (70), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 145 FPSDKLNNGGN-IRNVLD--VGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL 197
           F   K  NGGN I+  LD   G G  S G+YL  H  + M L P D       F L
Sbjct: 27  FDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYL 82


>pdb|1WIJ|A Chain A, Solution Structure Of The Dna-Binding Domain Of Ethylene-
           Insensitive3-Like3
          Length = 140

 Score = 28.5 bits (62), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 53  SLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVW-KANIPHTH 101
           SL+    +HC PP+R+Y    P  KG   P  WP   +E W K  +P + 
Sbjct: 22  SLLSSLMQHCDPPQRKY----PLEKGTP-PPWWPTGNEEWWVKLGLPKSQ 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,426,680
Number of Sequences: 62578
Number of extensions: 810195
Number of successful extensions: 2493
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2493
Number of HSP's gapped (non-prelim): 2
length of query: 555
length of database: 14,973,337
effective HSP length: 104
effective length of query: 451
effective length of database: 8,465,225
effective search space: 3817816475
effective search space used: 3817816475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)